Citrus Sinensis ID: 036158

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
Protein Sequence
MGGRVIDADSKPTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEEEEEccccccHHHHHHHHHcccccccccccccccccEEEEEEEEEcccEEEEEcccccccccccHHHHHHHHHHHHHccccccEEEEEEEEccccccHHHHHHHHHHHHHHcHHHHccEEEEEEcccccccccccHHHHHcccccHHHHHHHHHcccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccEEEEEEEccccccccccccHcccHHHHHccccccccHHHHHcccccccccEEEEEEccccccccccHHHHHHHHHHHHHHcccccEEEEEEEEccccccHHHHHHHHHHHHHHcHHHHHEEEEEEEccHHHccccccHHHHHHccccHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcc
Coil and Loop (DISEMBL)
mggrvidadskptspsngernlvlvgrtgngksatansiLGKRafkskagssgvtkTCEMQRTmlkdgqvvnvidtpglfdssadsefVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTggdeledndeTLEDylgrecpkpLKEILQLCDnrcvlfdnktkDTAKRTEQVGKLLSLVNSVIvqnggqpytDEIFAELK
Flexible Loop (DISEMBL)
mggrvidadskptspsngernlvlvgrtgngksatansilgkrafkskagssgvTKTCEMQRTMLKDGQVVNVIDTPglfdssadseFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNsvivqnggqpytDEIFAELK
Low Complexity Region (SEG)
MGGRVIDADSKPTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFtggdeledndetledYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK
Disordered region (IsUnstruct)
*************************************************************RTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTD*******
Disordered Region (DISOPRED)
*********************LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAE**
Disordered Region (DISEMBL)
*****************GERNLVLVGRTGNGKSATANSILGKRAF**********KTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK
Disordered Region (DISPRO)
*****************GERNLVLVGRTGNGKSAT****LGKRAFKSKAGSSGVTKTCE*QRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGGRVIDADSKPTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	225	2.2.26 [Sep-21-2011]
O81025	463	Putative protein PHLOEM P	no	no	0.915	0.444	0.524	6e-59
P54120	353	Protein AIG1 OS=Arabidops	no	no	0.911	0.580	0.570	1e-57
Q9NUV9	329	GTPase IMAP family member	yes	no	0.893	0.610	0.376	1e-34
Q8K3K9	310	GTPase IMAP family member	yes	no	0.862	0.625	0.395	2e-32
Q8NHV1	300	GTPase IMAP family member	no	no	0.866	0.65	0.363	2e-30
Q99JY3	219	GTPase IMAP family member	no	no	0.808	0.831	0.377	1e-28
Q8WWP7	306	GTPase IMAP family member	no	no	0.955	0.702	0.329	2e-27
Q8ND71	665	GTPase IMAP family member	no	no	0.884	0.299	0.373	2e-26
P70224	277	GTPase IMAP family member	no	no	0.871	0.707	0.331	6e-26
Q9UG22	337	GTPase IMAP family member	no	no	0.924	0.617	0.309	1e-24

>sp|O81025|P2A03_ARATH Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabidopsis thaliana GN=PP2A3 PE=4 SV=1

 Score =  227 bits (578), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 108/206 (52%), Positives = 151/206 (73%)

Query: 20  RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79
           +N+VLVGRTGNGKS+T N++LG + FKSK  + GVT  CEM R  ++DG ++NVIDTPGL
Sbjct: 6   KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGL 65

Query: 80  FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDY 139
            DS    + +S EI+ C+ M ++GIHAVL+V S R R S+EE + ++ L+ +FG +I DY
Sbjct: 66  CDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQILDY 125

Query: 140 MIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGK 199
            IVVFTGGD+LE++D+TL+DY    CP+ L ++L+LC  R VLFDNK+KD  K+ EQV +
Sbjct: 126 CIVVFTGGDDLEEDDQTLDDYFRAGCPEFLTKVLRLCGGRKVLFDNKSKDEKKKVEQVKQ 185

Query: 200 LLSLVNSVIVQNGGQPYTDEIFAELK 225
           LL+ V +V  Q GG PYT ++  ++K
Sbjct: 186 LLARVENVGEQTGGIPYTYQLHRKIK 211

Arabidopsis thaliana (taxid: 3702)

>sp|P54120|AIG1_ARATH Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1

 Score =  222 bits (566), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 117/205 (57%), Positives = 146/205 (71%)

Query: 21  NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF 80
           N+VLVGRTGNGKSAT NSI+  + FKSK  SSGVT  C   + +  +G ++NVIDTPGLF
Sbjct: 44  NIVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPEGPILNVIDTPGLF 103

Query: 81  DSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYM 140
           D S  +EF+ KEIVKC+ +   G+HAVL+V SVR R S+EE   +  L+ LFG KI DY+
Sbjct: 104 DLSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLSTLQVLFGSKIVDYL 163

Query: 141 IVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKL 200
           IVVFTGGD LED+  TLEDYLG   P  LK +L LC  R +LFDNKTKD  K+T+QV +L
Sbjct: 164 IVVFTGGDVLEDDGMTLEDYLGDNMPDFLKRVLILCGQRMILFDNKTKDDEKKTKQVHEL 223

Query: 201 LSLVNSVIVQNGGQPYTDEIFAELK 225
           L L++ V  QN   PYTDE++  +K
Sbjct: 224 LKLIDLVRKQNNNIPYTDEMYHMIK 248

Arabidopsis thaliana (taxid: 3702)

>sp|Q9NUV9|GIMA4_HUMAN GTPase IMAP family member 4 OS=Homo sapiens GN=GIMAP4 PE=1 SV=1

 Score =  146 bits (369), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 78/207 (37%), Positives = 129/207 (62%), Gaps = 6/207 (2%)

Query: 15  PSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVI 74
           P N +  +VLVG+TG GKSAT NSILG++ F S   +  +TK CE + +  K+ ++V V+
Sbjct: 26  PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 84

Query: 75  DTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK 134
           DTPG+FD+   +   SKEI++CI +T  G HA+L+V  +  R++EEE  A   +  +FG+
Sbjct: 85  DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKMFGE 143

Query: 135 KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRT 194
           +   +MI++FT  D+L D +  L DYL RE P+ +++++ +  +R    +NK    A++ 
Sbjct: 144 RARSFMILIFTRKDDLGDTN--LHDYL-REAPEDIQDLMDIFGDRYCALNNKATG-AEQE 199

Query: 195 EQVGKLLSLVNSVIVQNGGQPYTDEIF 221
            Q  +LL L+  V+ +N    YT+ ++
Sbjct: 200 AQRAQLLGLIQRVVRENKEGCYTNRMY 226

May play a role in regulating lymphocyte apoptosis (By similarity). Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium.

Homo sapiens (taxid: 9606)

>sp|Q8K3K9|GIMA4_RAT GTPase IMAP family member 4 OS=Rattus norvegicus GN=Gimap4 PE=2 SV=1

 Score =  139 bits (350), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/200 (39%), Positives = 127/200 (63%), Gaps = 6/200 (3%)

Query: 22  LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81
           +VL+G+TG GKS+T NSILG++AF S   +  +TK CE +   + DG+ + V+DTPG+FD
Sbjct: 33  IVLLGKTGAGKSSTGNSILGRKAFLSGICAKSITKVCE-KGVSIWDGKELVVVDTPGIFD 91

Query: 82  SSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMI 141
           +        KEI +C+ +T  G HA+L+V  +   ++ EE  A   L S+F KK   +MI
Sbjct: 92  TEVPDADTQKEITRCVALTSPGPHALLLVIPL-GCYTVEEHKATRKLLSMFEKKARRFMI 150

Query: 142 VVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLL 201
           ++ T  D+LED D  + +YL    P+ L+E++    NR  LF+NK    A++ EQ  +LL
Sbjct: 151 LLLTRKDDLEDTD--IHEYL-ETAPEVLQELIYEFRNRYCLFNNKASG-AEQEEQKRQLL 206

Query: 202 SLVNSVIVQNGGQPYTDEIF 221
           +LV S++ +NGG+ +T++++
Sbjct: 207 TLVQSMVRENGGKYFTNKMY 226

May play a role in regulating lymphocyte apoptosis. Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium.

Rattus norvegicus (taxid: 10116)

>sp|Q8NHV1|GIMA7_HUMAN GTPase IMAP family member 7 OS=Homo sapiens GN=GIMAP7 PE=2 SV=1

 Score =  132 bits (332), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 73/201 (36%), Positives = 126/201 (62%), Gaps = 6/201 (2%)

Query: 22  LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81
           +VLVG+TG+GKSATAN+ILG+  F S+  +  VTK C+ + +    G+ + V+DTPGLFD
Sbjct: 11  IVLVGKTGSGKSATANTILGEEIFDSRIAAQAVTKNCQ-KASREWQGRDLLVVDTPGLFD 69

Query: 82  SSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMI 141
           +    +   KEI +CI  +  G HA+++V  +  R++EEE   + +++++FGK    +M+
Sbjct: 70  TKESLDTTCKEISRCIISSCPGPHAIVLVL-LLGRYTEEEQKTVALIKAVFGKSAMKHMV 128

Query: 142 VVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDT-AKRTEQVGKL 200
           ++FT  +ELE   ++  D++  +    LK I++ C NRC  F N  K + A++  QV +L
Sbjct: 129 ILFTRKEELE--GQSFHDFIA-DADVGLKSIVKECGNRCCAFSNSKKTSKAEKESQVQEL 185

Query: 201 LSLVNSVIVQNGGQPYTDEIF 221
           + L+  ++  N G  ++D+I+
Sbjct: 186 VELIEKMVQCNEGAYFSDDIY 206

Homo sapiens (taxid: 9606)

>sp|Q99JY3|GIMA4_MOUSE GTPase IMAP family member 4 OS=Mus musculus GN=Gimap4 PE=1 SV=1

 Score =  126 bits (317), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/188 (37%), Positives = 115/188 (61%), Gaps = 6/188 (3%)

Query: 22  LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81
           +VL+G+TG GKS+T NSILG++ F S   +  +TK CE +R    DG+ + V+DTPG+FD
Sbjct: 33  IVLLGKTGAGKSSTGNSILGEKVFNSGICAKSITKVCE-KRVSTWDGKELVVVDTPGIFD 91

Query: 82  SSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMI 141
           +        +EI + + +T  G HA+L+V  +  R++ EE  A   +  +FGK+   +MI
Sbjct: 92  TEVPDADTQREITRYVALTSPGPHALLLVVPL-GRYTVEEHKATQKILDMFGKQARRFMI 150

Query: 142 VVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLL 201
           ++ T  D+LED D  + +YL  + PK  +E++    NR  LF+N+    A++ EQ  +LL
Sbjct: 151 LLLTRKDDLEDTD--IHEYL-EKAPKFFQEVMHEFQNRYCLFNNRASG-AEKEEQKMQLL 206

Query: 202 SLVNSVIV 209
           +LV S+ +
Sbjct: 207 TLVQSMFL 214

Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium (By similarity). May play a role in regulating lymphocyte apoptosis.

Mus musculus (taxid: 10090)

>sp|Q8WWP7|GIMA1_HUMAN GTPase IMAP family member 1 OS=Homo sapiens GN=GIMAP1 PE=1 SV=1

 Score =  122 bits (306), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 128/231 (55%), Gaps = 16/231 (6%)

Query: 1   MGGRVIDADSK--------PTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSS 52
           MGGR +  D +          S     R L+LVGRTG GKSAT NSILG+R F S+ G++
Sbjct: 1   MGGRKMATDEENVYGLEENAQSRQESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGAT 60

Query: 53  GVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS-ADSEFVSKEIVKCIGMTKDGIHAVLVVF 111
            VT+ C    +   D   V V+DTP +F S  + ++   +E   C  ++  G HA+L+V 
Sbjct: 61  SVTRACTTG-SRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVT 119

Query: 112 SVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE 171
            +  RF+ ++  A+  +  +FG+ +  +M++VFT  ++L     +L DY+     + L+E
Sbjct: 120 QL-GRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGG--SLHDYVSNTENRALRE 176

Query: 172 ILQLCDNRCVLFDNKTKDTAKRTE-QVGKLLSLVNSVIVQNGGQPYTDEIF 221
           ++  C  R   FDN+   T +  E QV +LL +V  +++++ G  Y++E++
Sbjct: 177 LVAECGGRVCAFDNRA--TGREQEAQVEQLLGMVEGLVLEHKGAHYSNEVY 225

May regulate lymphocyte survival. Required for normal levels of mature T-lymphocytes and mature B-cells.

Homo sapiens (taxid: 9606)

>sp|Q8ND71|GIMA8_HUMAN GTPase IMAP family member 8 OS=Homo sapiens GN=GIMAP8 PE=1 SV=2

 Score =  119 bits (297), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/209 (37%), Positives = 118/209 (56%), Gaps = 10/209 (4%)

Query: 21  NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPG-- 78
           N+VLVGR+G GKSAT NSILG   F S+  +  VTKT +  R    DGQ V V+DTP   
Sbjct: 440 NIVLVGRSGTGKSATGNSILGSLVFTSRLRAQPVTKTSQSGRRTW-DGQEVVVVDTPSFN 498

Query: 79  -LFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKIS 137
            + D   D   + +E+ +C+   + G    ++VF +  RF+EE+  A+  LE++FG   +
Sbjct: 499 QMLDVEKDPSRLEEEVKRCLSCCEKGDTFFVLVFQL-GRFTEEDKTAVAKLEAIFGADFT 557

Query: 138 DYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQV 197
            Y I++FT  ++L   +  LED++     K L+ I + C  R   F+NK    A+ T QV
Sbjct: 558 KYAIMLFTRKEDLGAGN--LEDFMKNSDNKALRRIFKKCGRRVCAFNNKETGQAQET-QV 614

Query: 198 GKLLSLVNSVIVQNG--GQPYTDEIFAEL 224
             LL+ VN +  ++G  G P+T E  ++L
Sbjct: 615 KALLTKVNDLRKESGWSGYPHTQENVSKL 643

Exerts an anti-apoptotic effect in the immune system and is involved in responses to infections.

Homo sapiens (taxid: 9606)

>sp|P70224|GIMA1_MOUSE GTPase IMAP family member 1 OS=Mus musculus GN=Gimap1 PE=1 SV=3

 Score =  117 bits (293), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 119/202 (58%), Gaps = 6/202 (2%)

Query: 21  NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF 80
            L+LVGRTG GKSAT NSILG++ F S+ G+  VT++C +   M    Q V V+DTP +F
Sbjct: 5   RLILVGRTGTGKSATGNSILGQKCFLSRLGAVPVTRSCTLASRMWAGWQ-VEVVDTPDIF 63

Query: 81  DSS-ADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDY 139
            S    ++    E  +C  ++  G HA+L+V  +  RF+ ++  A+  ++ LFGK++   
Sbjct: 64  SSEIPRTDPGCVETARCFVLSAPGPHALLLVTQL-GRFTMQDSQALAAVKRLFGKQVMAR 122

Query: 140 MIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGK 199
            +VVFT  ++L  +  +L+DY+     + L++++  C  R    +N+   + +R  Q  +
Sbjct: 123 TVVVFTRQEDLAGD--SLQDYVHCTDNRALRDLVAECGGRVCALNNRATGS-EREAQAEQ 179

Query: 200 LLSLVNSVIVQNGGQPYTDEIF 221
           LL +V  ++ ++GG  Y++E++
Sbjct: 180 LLGMVACLVREHGGAHYSNEVY 201

May regulate lymphocyte survival. Required for normal levels of mature T-lymphocytes and mature B-cells.

Mus musculus (taxid: 10090)

>sp|Q9UG22|GIMA2_HUMAN GTPase IMAP family member 2 OS=Homo sapiens GN=GIMAP2 PE=1 SV=2

 Score =  113 bits (282), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 121/213 (56%), Gaps = 5/213 (2%)

Query: 10  SKPTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ 69
           +K    S  E  ++LVG+TG GKSA  NSIL K+AF+SK GS  +TKTC   +    + +
Sbjct: 13  AKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNRE 72

Query: 70  VVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILE 129
           +V +IDTP +F      E + KE+ +C  ++  G H +L+V  +  R++ ++  A   ++
Sbjct: 73  IV-IIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVK 130

Query: 130 SLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKD 189
            +FG+    + IV+FT  ++L  N  +L DY+     K L +++  C  R   F+N+  +
Sbjct: 131 EIFGEDAMGHTIVLFTHKEDL--NGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRA-E 187

Query: 190 TAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFA 222
            + + +QV +L+  +  ++++  G  YT+ +++
Sbjct: 188 GSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYS 220

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
225460273	340	PREDICTED: protein AIG1 [Vitis vinifera]	1.0	0.661	0.768	9e-99
296089429	345	unnamed protein product [Vitis vinifera]	1.0	0.652	0.768	9e-99
255539412	339	aig1, putative [Ricinus communis] gi|223	1.0	0.663	0.764	5e-98
224146305	335	predicted protein [Populus trichocarpa]	1.0	0.671	0.746	2e-95
224136037	259	predicted protein [Populus trichocarpa]	0.946	0.822	0.769	2e-92
363814318	336	uncharacterized protein LOC100807910 [Gl	1.0	0.669	0.706	6e-88
356526433	350	PREDICTED: protein AIG1-like [Glycine ma	0.977	0.628	0.713	2e-87
4097585	344	NTGP4, partial [Nicotiana tabacum]	0.991	0.648	0.666	4e-84
357470421	340	AIG1 [Medicago truncatula] gi|355506550|	1.0	0.661	0.660	5e-82
449464872	341	PREDICTED: protein AIG1-like [Cucumis sa	1.0	0.659	0.698	4e-81

>gi|225460273|ref|XP_002281996.1| PREDICTED: protein AIG1 [Vitis vinifera]

 Score =  365 bits (936), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 173/225 (76%), Positives = 198/225 (88%)

Query: 1   MGGRVIDADSKPTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEM 60
           MGG  ID + + T+PS+G R LVLVGRTGNGKSAT NSILG+++FKS+A SSGVT TCE+
Sbjct: 1   MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 60

Query: 61  QRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEE 120
           QRT+L+DGQ+VNVIDTPGLFD SA+S+FV KEIVKCI + KDG+HAVLVVFSVR RFS+E
Sbjct: 61  QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 120

Query: 121 EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC 180
           E AA+H L++LFG KI DYMIVVFTGGDELEDNDETLEDYLGRECP+PLK+ L LC NR 
Sbjct: 121 EEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDETLEDYLGRECPEPLKQTLLLCQNRL 180

Query: 181 VLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 225
           VLFDNKTKD AK+ EQV KLLSLVNSVI+QNGGQPYTDE+F ELK
Sbjct: 181 VLFDNKTKDEAKKYEQVQKLLSLVNSVILQNGGQPYTDELFMELK 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089429|emb|CBI39248.3| unnamed protein product [Vitis vinifera]

 Score =  365 bits (936), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 173/225 (76%), Positives = 198/225 (88%)

Query: 1   MGGRVIDADSKPTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEM 60
           MGG  ID + + T+PS+G R LVLVGRTGNGKSAT NSILG+++FKS+A SSGVT TCE+
Sbjct: 6   MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 65

Query: 61  QRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEE 120
           QRT+L+DGQ+VNVIDTPGLFD SA+S+FV KEIVKCI + KDG+HAVLVVFSVR RFS+E
Sbjct: 66  QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 125

Query: 121 EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC 180
           E AA+H L++LFG KI DYMIVVFTGGDELEDNDETLEDYLGRECP+PLK+ L LC NR 
Sbjct: 126 EEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDETLEDYLGRECPEPLKQTLLLCQNRL 185

Query: 181 VLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 225
           VLFDNKTKD AK+ EQV KLLSLVNSVI+QNGGQPYTDE+F ELK
Sbjct: 186 VLFDNKTKDEAKKYEQVQKLLSLVNSVILQNGGQPYTDELFMELK 230

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539412|ref|XP_002510771.1| aig1, putative [Ricinus communis] gi|223551472|gb|EEF52958.1| aig1, putative [Ricinus communis]

 Score =  362 bits (930), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 172/225 (76%), Positives = 194/225 (86%)

Query: 1   MGGRVIDADSKPTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEM 60
           MGG  ID D + TSPSNG R +VLVGRTGNGKSAT NS+LG++AFKS+A SSGVT TCE+
Sbjct: 1   MGGSAIDDDWELTSPSNGVRTVVLVGRTGNGKSATGNSLLGRKAFKSRASSSGVTSTCEL 60

Query: 61  QRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEE 120
           Q+T++ DGQV+NV+DTPGLFD SA+SEFV KEIVKCI M KDGIHAVLVVFSVR RFS+E
Sbjct: 61  QQTVITDGQVINVVDTPGLFDFSAESEFVGKEIVKCINMAKDGIHAVLVVFSVRTRFSQE 120

Query: 121 EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC 180
           E AA+  L++LFG KI DYMIVVFTGGDELEDNDETLEDYLGRECP+PL+EIL LC NR 
Sbjct: 121 EEAALRSLQTLFGSKIFDYMIVVFTGGDELEDNDETLEDYLGRECPQPLQEILTLCKNRL 180

Query: 181 VLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 225
           VLFDNKTKD  KR EQV +LLSLVN VI +NGGQPYTDE+F ELK
Sbjct: 181 VLFDNKTKDEFKRAEQVHQLLSLVNLVIAENGGQPYTDELFVELK 225

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146305|ref|XP_002325957.1| predicted protein [Populus trichocarpa] gi|222862832|gb|EEF00339.1| predicted protein [Populus trichocarpa]

 Score =  353 bits (907), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 168/225 (74%), Positives = 194/225 (86%)

Query: 1   MGGRVIDADSKPTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEM 60
           MGG  +D D +  SPSNG R +VLVGRTGNGKSAT NSILG++AFKS+A SSGVT +CE+
Sbjct: 1   MGGSAMDDDWEFASPSNGVRTIVLVGRTGNGKSATGNSILGRKAFKSRASSSGVTSSCEL 60

Query: 61  QRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEE 120
           QRT+L+DGQ++NVIDTPGLFD SA SEFV +EIVKCI M KDGIHAVLVVFSVR RFS+E
Sbjct: 61  QRTVLRDGQIINVIDTPGLFDFSAGSEFVGREIVKCINMAKDGIHAVLVVFSVRTRFSQE 120

Query: 121 EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC 180
           E AA+  L++LFG KI DYMIVVFTGGDELEDNDETLEDYLGRECP+PLKE+L LC+NR 
Sbjct: 121 EEAALRSLQTLFGSKILDYMIVVFTGGDELEDNDETLEDYLGRECPQPLKEVLTLCENRR 180

Query: 181 VLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 225
           VLF+NKTKD  K  EQV +LLSLVN VI QNGGQPY+DE+FAE++
Sbjct: 181 VLFNNKTKDVLKGVEQVQELLSLVNRVIEQNGGQPYSDELFAEIQ 225

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136037|ref|XP_002327365.1| predicted protein [Populus trichocarpa] gi|222835735|gb|EEE74170.1| predicted protein [Populus trichocarpa]

 Score =  343 bits (881), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 164/213 (76%), Positives = 186/213 (87%)

Query: 13  TSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVN 72
            SPSNG R +VLVGRTGNGKSAT NSILGK+AFKS+A SSGVT TCE+Q T+L DGQ++N
Sbjct: 1   ASPSNGVRTVVLVGRTGNGKSATGNSILGKKAFKSRASSSGVTSTCELQSTVLGDGQIIN 60

Query: 73  VIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLF 132
           VIDTPGLFD SA SEFV +EIVKCI M KDGIHAVLVVFSVR RFS+EE AA+  L++LF
Sbjct: 61  VIDTPGLFDFSAGSEFVGREIVKCINMAKDGIHAVLVVFSVRTRFSQEEEAALRSLQTLF 120

Query: 133 GKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAK 192
           G KI DYMIVVFTGGDELEDNDETLEDYLGRECP+PLKE+L+LC+NR VLFDNKTKD  K
Sbjct: 121 GSKILDYMIVVFTGGDELEDNDETLEDYLGRECPQPLKEVLKLCENRRVLFDNKTKDLFK 180

Query: 193 RTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 225
           R EQ+ +LLSLVN VI QN GQPY+DE+FAE++
Sbjct: 181 RAEQMQELLSLVNRVIEQNAGQPYSDELFAEIQ 213

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814318|ref|NP_001242800.1| uncharacterized protein LOC100807910 [Glycine max] gi|255639255|gb|ACU19926.1| unknown [Glycine max]

 Score =  329 bits (843), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 159/225 (70%), Positives = 184/225 (81%)

Query: 1   MGGRVIDADSKPTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEM 60
           MGG  I  D + TS SN  R +VLVGRTGNGKSAT N+ILG++ FKS+A SS V+ +CE+
Sbjct: 1   MGGSSIGDDWELTSSSNEGRTVVLVGRTGNGKSATGNTILGRKVFKSRASSSAVSTSCEL 60

Query: 61  QRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEE 120
           Q T L DGQ+VNVIDTPGLFD S  SEFV KEIVKCI + KDGIHAV+VVFSVR RF+EE
Sbjct: 61  QTTELNDGQIVNVIDTPGLFDLSVGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEE 120

Query: 121 EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC 180
           E  A+  L++LFG KI DYMIVVFTGGDELE+N ETLEDYLGRECP+PLKEIL LCDNRC
Sbjct: 121 EETALRSLQTLFGSKIVDYMIVVFTGGDELEENAETLEDYLGRECPEPLKEILVLCDNRC 180

Query: 181 VLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 225
           VLFDNKTKD  KR  QV +LLS VN+V+ +NGG+PYTDE+F +LK
Sbjct: 181 VLFDNKTKDEGKRFGQVQQLLSFVNTVLSRNGGRPYTDELFTQLK 225

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526433|ref|XP_003531822.1| PREDICTED: protein AIG1-like [Glycine max]

 Score =  327 bits (838), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 157/220 (71%), Positives = 184/220 (83%)

Query: 6   IDADSKPTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTML 65
           ID D + TS SN  R +VLVGRTGNGKSAT N+ILG++AFKS+A SS V+ +CE++ T L
Sbjct: 20  IDDDWELTSSSNEVRTVVLVGRTGNGKSATGNTILGRKAFKSRASSSAVSTSCELKTTEL 79

Query: 66  KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAI 125
            +GQ+VNVIDTPGLFD SA SEFV KEIVKCI + KDGIHAV+VVFSVR RF+EEE  A+
Sbjct: 80  NNGQIVNVIDTPGLFDLSAGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEEEETAL 139

Query: 126 HILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDN 185
             L++LFG KI DYMIVVFTGGDELE+NDETLEDYLGRECP+PLKEIL LC+NRCVLFDN
Sbjct: 140 RSLQTLFGSKIVDYMIVVFTGGDELEENDETLEDYLGRECPEPLKEILVLCENRCVLFDN 199

Query: 186 KTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 225
           KTKD  KR  QV +LLS VN V+ +NGG+PYTDE+F +LK
Sbjct: 200 KTKDEGKRFGQVQQLLSFVNMVLSRNGGRPYTDELFTQLK 239

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4097585|gb|AAD09518.1| NTGP4, partial [Nicotiana tabacum]

 Score =  316 bits (810), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 150/225 (66%), Positives = 183/225 (81%), Gaps = 2/225 (0%)

Query: 1   MGGRVIDADSKPTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEM 60
           MGG  I  D +    +NG R LVLVGRTGNGKSAT NSILG++AF+S + S+GVT TCE+
Sbjct: 6   MGGSAISDDWE--FAANGARTLVLVGRTGNGKSATGNSILGRKAFRSMSSSAGVTSTCEL 63

Query: 61  QRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEE 120
           QRT+L+DGQ+++VIDTPGLFD SA+ EF+  EIVKCI M KDGIHAVLVV SVR RFS E
Sbjct: 64  QRTVLEDGQILDVIDTPGLFDFSAEPEFIGNEIVKCINMAKDGIHAVLVVLSVRTRFSRE 123

Query: 121 EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC 180
           E AA+  L   FG KISDYM++VFTGGD+LEDN+ETLEDYLGR+CP+PLK+IL +C NR 
Sbjct: 124 EQAAVQSLREFFGGKISDYMVLVFTGGDDLEDNEETLEDYLGRDCPEPLKDILAMCGNRR 183

Query: 181 VLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 225
           VLFDNK+KD  K+ +Q+ +LLSLVN V+  NGG+PYTD++F ELK
Sbjct: 184 VLFDNKSKDHLKKADQLKQLLSLVNVVVENNGGKPYTDDLFKELK 228

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357470421|ref|XP_003605495.1| AIG1 [Medicago truncatula] gi|355506550|gb|AES87692.1| AIG1 [Medicago truncatula]

 Score =  309 bits (792), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 150/227 (66%), Positives = 178/227 (78%), Gaps = 2/227 (0%)

Query: 1   MGGRVIDA--DSKPTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTC 58
           MGG  + +  D +  S  N  + LVLVGRTGNGKSAT NSILGK+ F S+A SSG+T +C
Sbjct: 1   MGGSSVLSVDDWEFASSPNDVKTLVLVGRTGNGKSATGNSILGKKVFNSRASSSGITTSC 60

Query: 59  EMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFS 118
           EMQ + + DGQ VNVID+PGLFD S   E + KEI+KCI + KDGIHAV+VVFSVR RF+
Sbjct: 61  EMQTSEMNDGQTVNVIDSPGLFDFSVGIELLGKEIIKCIDLAKDGIHAVIVVFSVRTRFT 120

Query: 119 EEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN 178
           EEE  A+  ++ LFG KI D+MIVVFTGGDELE+NDETL+DYLGR+CP+PLK IL LC N
Sbjct: 121 EEEENALRNVQKLFGSKIVDHMIVVFTGGDELEENDETLDDYLGRDCPEPLKAILALCGN 180

Query: 179 RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 225
           RCVLFDNKTKD  K+TEQV +LLS VN V+ QNGGQPY DE+F ELK
Sbjct: 181 RCVLFDNKTKDEKKQTEQVQQLLSFVNMVVSQNGGQPYRDELFKELK 227

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464872|ref|XP_004150153.1| PREDICTED: protein AIG1-like [Cucumis sativus] gi|449520867|ref|XP_004167454.1| PREDICTED: protein AIG1-like [Cucumis sativus]

 Score =  306 bits (784), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 160/229 (69%), Positives = 189/229 (82%), Gaps = 4/229 (1%)

Query: 1   MGGRVIDADSKP--TSPSNGE--RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTK 56
           MGG  I+ D +   TSP+NG   R +VLVGRTGNGKSAT NSILG++AFKS+A SSGVT 
Sbjct: 1   MGGSAIEEDWELDLTSPTNGRSARTVVLVGRTGNGKSATGNSILGRKAFKSRACSSGVTV 60

Query: 57  TCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNR 116
           T E+Q T+L DGQ ++VIDTPG+FD SA S+FV KEIVKCI M KDGIHAVLVVFSVR R
Sbjct: 61  TSELQTTVLSDGQEIDVIDTPGMFDFSAGSDFVGKEIVKCIDMAKDGIHAVLVVFSVRTR 120

Query: 117 FSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176
           FS EE AA+  L++LFG KI +YMIVVFTGGDELE+N+ETLEDYLGR CP PLK+IL LC
Sbjct: 121 FSLEEEAALRSLQTLFGSKIVNYMIVVFTGGDELEENEETLEDYLGRSCPDPLKDILALC 180

Query: 177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 225
            NRCVLFDNKTKD  ++  QV +LLSLVN +++QNGGQPY+DE+F+ELK
Sbjct: 181 QNRCVLFDNKTKDEGRKVGQVQQLLSLVNGIVMQNGGQPYSDELFSELK 229

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
TAIR|locus:2009041	342	AT1G33970 [Arabidopsis thalian	0.995	0.654	0.568	6e-64
TAIR|locus:2203817	311	AT1G33950 [Arabidopsis thalian	0.964	0.697	0.481	3.1e-51
TAIR|locus:2203807	353	AIG1 "AVRRPT2-INDUCED GENE 1"	0.964	0.614	0.497	1.1e-50
TAIR|locus:2039528	463	PP2-A3 "phloem protein 2-A3" [	0.915	0.444	0.475	6e-48
TAIR|locus:2203802	334	AT1G33890 [Arabidopsis thalian	0.96	0.646	0.449	2e-47
TAIR|locus:2203832	336	AT1G33930 [Arabidopsis thalian	0.937	0.627	0.464	2e-47
TAIR|locus:2203797	326	AT1G33900 [Arabidopsis thalian	1.0	0.690	0.426	5.4e-47
TAIR|locus:2140558	394	AT4G09940 [Arabidopsis thalian	0.902	0.515	0.478	9.1e-45
TAIR|locus:2140568	336	AT4G09950 [Arabidopsis thalian	0.906	0.607	0.471	1e-43
TAIR|locus:2012678	225	AT1G33830 [Arabidopsis thalian	0.911	0.911	0.429	1.3e-43

TAIR|locus:2009041 AT1G33970 [Arabidopsis thaliana (taxid:3702)]

 Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
 Identities = 128/225 (56%), Positives = 165/225 (73%)

Query:     1 MGGRVIDADSKPTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEM 60
             MGG +++ D +  S SN +R LVLVGRTGNGKSAT NSILG++AF+S+A + GVT TCE 
Sbjct:     6 MGGDMMEDDWEFASSSNPKRTLVLVGRTGNGKSATGNSILGRKAFRSRARTVGVTSTCES 65

Query:    61 QRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEE 120
             QR + +DG ++NV+DTPGLFD S  ++F+ KEIV+CI + +DGIHA+L+VFSVR R +EE
Sbjct:    66 QRVVQEDGDIINVVDTPGLFDLSTAADFIGKEIVRCISLAEDGIHAILLVFSVR-RLAEE 124

Query:   121 EGAAIHILESLFGKKISDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRC 180
             E   +  L++LFG KI+DYMIVVF               YL   CP+ LKEIL +CDNR 
Sbjct:   125 EQTVLSFLQALFGSKIADYMIVVFTGGDELEENEETLEEYLADYCPEFLKEILGICDNRL 184

Query:   181 VLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 225
             VLF+NKT D  K+ EQV KLLSLV SV+ QN G+PY+DE+F EL+
Sbjct:   185 VLFNNKTTDKVKKAEQVQKLLSLVESVVKQNNGKPYSDELFHELQ 229

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203817 AT1G33950 [Arabidopsis thaliana (taxid:3702)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 105/218 (48%), Positives = 143/218 (65%)

Query:     8 ADSKPTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKD 67
             A  K  S    E N+VLVGRTGNGKSAT NS++GK+ F SKA +SGVT  C+    + KD
Sbjct:     6 AQQKGHSSKQAE-NIVLVGRTGNGKSATGNSLIGKKVFASKAHASGVTMKCQTHGVVTKD 64

Query:    68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHI 127
             G  +NVIDTPGLFD S  +E++SKEIV+C+ + + GIHAVL+V S R R ++EE   +  
Sbjct:    65 GHKINVIDTPGLFDLSVSAEYISKEIVRCLTLAEGGIHAVLLVLSARTRITQEEENTLRT 124

Query:   128 LESLFGKKISDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNKT 187
             L++LFG +I DY++VVF               YLGR+CP  +KE++++  NR V+ DNKT
Sbjct:   125 LQALFGSQILDYVVVVFTGGDVLEECKETLEDYLGRDCPTFIKEVMRMSSNRKVVIDNKT 184

Query:   188 KDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 225
              D  K+ EQV KLLSLV+ +     G+ YTD+ +  +K
Sbjct:   185 HDEGKKAEQVHKLLSLVDDIRRSKCGEAYTDDTYHMIK 222

GO:0005525 "GTP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2203807 AIG1 "AVRRPT2-INDUCED GENE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 108/217 (49%), Positives = 137/217 (63%)

Query:     9 DSKPTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG 68
             D    S  +   N+VLVGRTGNGKSAT NSI+  + FKSK  SSGVT  C   + +  +G
Sbjct:    32 DEFSASQPHPVENIVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPEG 91

Query:    69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHIL 128
              ++NVIDTPGLFD S  +EF+ KEIVKC+ +   G+HAVL+V SVR R S+EE   +  L
Sbjct:    92 PILNVIDTPGLFDLSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLSTL 151

Query:   129 ESLFGKKISDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNKTK 188
             + LFG KI DY+IVVF               YLG   P  LK +L LC  R +LFDNKTK
Sbjct:   152 QVLFGSKIVDYLIVVFTGGDVLEDDGMTLEDYLGDNMPDFLKRVLILCGQRMILFDNKTK 211

Query:   189 DTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 225
             D  K+T+QV +LL L++ V  QN   PYTDE++  +K
Sbjct:   212 DDEKKTKQVHELLKLIDLVRKQNNNIPYTDEMYHMIK 248

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=IEP;ISS

GO:0006897 "endocytosis" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2039528 PP2-A3 "phloem protein 2-A3" [Arabidopsis thaliana (taxid:3702)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 98/206 (47%), Positives = 136/206 (66%)

Query:    20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79
             +N+VLVGRTGNGKS+T N++LG + FKSK  + GVT  CEM R  ++DG ++NVIDTPGL
Sbjct:     6 KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGL 65

Query:    80 FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDY 139
              DS    + +S EI+ C+ M ++GIHAVL+V S R R S+EE + ++ L+ +FG +I DY
Sbjct:    66 CDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQILDY 125

Query:   140 MIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGK 199
              IVVF               Y    CP+ L ++L+LC  R VLFDNK+KD  K+ EQV +
Sbjct:   126 CIVVFTGGDDLEEDDQTLDDYFRAGCPEFLTKVLRLCGGRKVLFDNKSKDEKKKVEQVKQ 185

Query:   200 LLSLVNSVIVQNGGQPYTDEIFAELK 225
             LL+ V +V  Q GG PYT ++  ++K
Sbjct:   186 LLARVENVGEQTGGIPYTYQLHRKIK 211

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0006826 "iron ion transport" evidence=RCA

GO:0006897 "endocytosis" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2203802 AT1G33890 [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 97/216 (44%), Positives = 140/216 (64%)

Query:    10 SKPTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ 69
             S+  S     +N+VLVGRTGNGKSAT NS++GK  F S+A ++GVTKTC+  + +   G 
Sbjct:     4 SEQASAYKAVKNIVLVGRTGNGKSATGNSLIGKDVFVSEAKATGVTKTCQTYKAVTPGGS 63

Query:    70 VVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILE 129
              +NVIDTPGLFD S  +EF+SKEI+ C+ + + G+H V++V SVR R ++EE   +  L+
Sbjct:    64 RINVIDTPGLFDLSVSAEFISKEIINCLRLAEGGLHVVVLVLSVRTRITQEEENTLSTLQ 123

Query:   130 SLFGKKISDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNKTKD 189
              LFG +I DY+IV+F               Y  + CP  LK +L LCD+R V+F+N TKD
Sbjct:   124 VLFGNEILDYLIVLFTGGDELEANNQTLDDYFHQGCPYFLKTVLGLCDDRKVMFNNMTKD 183

Query:   190 TAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 225
               K+ EQV + L+LV  V  +N G+P+  +++ E+K
Sbjct:   184 KHKKVEQVQQFLALVAKVEERNEGKPFRGKMYLEIK 219

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203832 AT1G33930 [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 99/213 (46%), Positives = 140/213 (65%)

Query:    15 PSNGE--RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVN 72
             PS  E  +N+VLVGRTGNGKSAT NSI+G++ F+SK  + GVT  C+  R +  DG ++N
Sbjct:    29 PSASEPVKNVVLVGRTGNGKSATGNSIIGRKVFESKYQAVGVTTRCKTFRAVTPDGPIIN 88

Query:    73 VIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLF 132
             VIDTPGLFD +  +EF+SKEIV C+ + ++G+HAV++V S+  R S+EE  A+  L+ LF
Sbjct:    89 VIDTPGLFDLAVSAEFISKEIVNCLILAREGLHAVVLVLSLSTRISQEEENALCTLQMLF 148

Query:   133 GKKISDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAK 192
             G KI DY+IVVF               YL   CP+ LK +L+LC  R V+FDN+TKD   
Sbjct:   149 GGKIVDYLIVVFTCGDMLEDRNMTLEDYLSNGCPEFLKNVLRLCGGRRVVFDNRTKDEGV 208

Query:   193 RTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 225
             + +QV +LL  V ++  + GG P+TD +   ++
Sbjct:   209 KAKQVQQLLVHVAAIEKETGGNPFTDTMHRRIQ 241

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2203797 AT1G33900 [Arabidopsis thaliana (taxid:3702)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 96/225 (42%), Positives = 145/225 (64%)

Query:     1 MGGRVIDADSKPTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEM 60
             M G     D +  S S   +N+VLVGRTGNGKSAT NS++GK+ F+S+  ++GVT  CE 
Sbjct:     1 MAGLEDTTDLRLPSASEPIKNIVLVGRTGNGKSATGNSLIGKQVFRSETRATGVTMKCET 60

Query:    61 QRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEE 120
                +   G  +NVIDTPGLFD S  +E++S+EI+ C+ + +DG+HAV++V SVR R S+E
Sbjct:    61 CVAVTPCGTGINVIDTPGLFDLSVSAEYLSQEIINCLVLAEDGLHAVVLVLSVRTRISQE 120

Query:   121 EGAAIHILESLFGKKISDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRC 180
             E A ++ L+ +FG +I DY++V+F               YL + CP+ LK +L+LC  R 
Sbjct:   121 EEATLNTLQVIFGSQIIDYLVVLFTGGDELEANNMTLDDYLSKGCPEFLKTVLRLCGGRR 180

Query:   181 VLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 225
             +LFDN+T D  K+ +QV +LL+ V ++     G P+TDE+  +++
Sbjct:   181 ILFDNRTTDEGKKVKQVQELLAHVAAIEKSTSGIPFTDEMHRKIQ 225

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2140558 AT4G09940 [Arabidopsis thaliana (taxid:3702)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 99/207 (47%), Positives = 140/207 (67%)

Query:    20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79
             R L+LVGR+GNGKSAT NSILG++AFKSK  +SGVT  CE+Q + L +GQ++NVIDTPGL
Sbjct:    48 RTLLLVGRSGNGKSATGNSILGRKAFKSKGRASGVTTACELQSSTLPNGQIINVIDTPGL 107

Query:    80 FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDY 139
             F  S  +EF  +EI++C  +TK+GI AVL+VFS++NR +EEE +A+  L+ LFG KI DY
Sbjct:   108 FSLSPSTEFTCREILRCFSLTKEGIDAVLLVFSLKNRLTEEEKSALFALKILFGSKIVDY 167

Query:   140 MIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNKTK-DTAKRTEQVG 198
             MIVVF               YL  + P   KEIL+ C++R VLF N++    +++ +QV 
Sbjct:   168 MIVVFTNEDSLEDDGDTFEEYL-EDSPD-FKEILEPCNDRKVLFRNRSNAPVSQKAKQVQ 225

Query:   199 KLLSLVNSVIVQNGGQPYTDEIFAELK 225
             +LL+ V  +   NG + Y  ++  E++
Sbjct:   226 ELLNYVEEIARLNG-KSYMADLSHEIR 251

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2140568 AT4G09950 [Arabidopsis thaliana (taxid:3702)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 98/208 (47%), Positives = 137/208 (65%)

Query:    19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPG 78
             ER LVL+GRTGNGKSAT NSILGK  F+SKA    +TK C++ ++ L +G  +NVIDTPG
Sbjct:    17 ERTLVLLGRTGNGKSATGNSILGKTMFQSKARGKFITKECKLHKSKLPNGLTINVIDTPG 76

Query:    79 LFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISD 138
             LF +S+ ++F  +EIV+C+ + K GI AVL+VFS+RNR +EEE + +  L+ LFG +I D
Sbjct:    77 LFSASSTTDFTIREIVRCLLLAKGGIDAVLLVFSLRNRLTEEEQSTLRTLKILFGSQIVD 136

Query:   139 YMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNK-TKDTAKRTEQV 197
             Y+IVVF               YL  +CP+  +EIL+ CD+R VLFDN      +K+  QV
Sbjct:   137 YIIVVFTNEDALECGETLDD-YL-EDCPE-FQEILEECDDRKVLFDNSYNAPVSKKDRQV 193

Query:   198 GKLLSLVNSVIVQNGGQPYTDEIFAELK 225
               LL+LV  +  +N G+ Y  ++  EL+
Sbjct:   194 HDLLNLVEQISKKNNGKSYMADLSHELR 221

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2012678 AT1G33830 [Arabidopsis thaliana (taxid:3702)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 88/205 (42%), Positives = 131/205 (63%)

Query:    21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF 80
             NL+L+GR+ NGKS+T N+I+G++ F+       + + C+M R +++DG ++NVIDTPGL 
Sbjct:    10 NLLLLGRSENGKSSTGNTIIGEKYFEVNLFGRDMDQRCKMFRALIEDGPIINVIDTPGLL 69

Query:    81 DSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYM 140
             +SS   +++SKEI+ C+ M ++GIHAVL V S+ NR S+ E    + L+ +F  KI DY 
Sbjct:    70 ESSVSGDYLSKEIMNCLTMAEEGIHAVLFVLSITNRISQREEFTFNTLQQIFDDKILDYF 129

Query:   141 IVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKL 200
             IVVF               YL   CP+ L  +L+LC  R VLF+NKTKD  KR +Q+ +L
Sbjct:   130 IVVFTGGDELEADNQTLDDYLREGCPEFLTRVLKLCGGRKVLFNNKTKDKGKRNKQLNQL 189

Query:   201 LSLVNSVIVQNGGQPYTDEIFAELK 225
             L+ V  +  QNGG PYT+ +  ++K
Sbjct:   190 LAHVTDIRQQNGGIPYTENMHRKIK 214

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	225
pfam04548	211	pfam04548, AIG1, AIG1 family	4e-97
cd01852	201	cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)	1e-94
cd01853	248	cd01853, Toc34_like, Translocon at the Outer-envel	9e-12
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	5e-10
cd00880	161	cd00880, Era_like, E	8e-09
TIGR00993	763	TIGR00993, 3a0901s04IAP86, chloroplast protein imp	2e-07
cd09912	180	cd09912, DLP_2, Dynamin-like protein including dyn	4e-07
TIGR00991	313	TIGR00991, 3a0901s02IAP34, GTP-binding protein (Ch	2e-05
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	2e-05
cd01850	275	cd01850, CDC_Septin, CDC/Septin GTPase family	4e-05
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	1e-04
pfam00735	280	pfam00735, Septin, Septin	3e-04
COG3596	296	COG3596, COG3596, Predicted GTPase [General functi	0.002
COG5019	373	COG5019, CDC3, Septin family protein [Cell divisio	0.004

>gnl|CDD|218141 pfam04548, AIG1, AIG1 family

 Score =  281 bits (721), Expect = 4e-97
 Identities = 109/206 (52%), Positives = 155/206 (75%), Gaps = 5/206 (2%)

Query: 20  RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79
             +VLVG+TGNGKSAT NSILG++AF+SK  + GVTKTC++      DG+++NVIDTPGL
Sbjct: 1   LRIVLVGKTGNGKSATGNSILGRKAFESKLRAQGVTKTCQLVSRTW-DGRIINVIDTPGL 59

Query: 80  FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDY 139
           FD S  ++F+SKEI++C+ + + G HAVL+V S+  RF+EEE  A+  L+ LFG KI DY
Sbjct: 60  FDLSVSNDFISKEIIRCLLLAEPGPHAVLLVLSLG-RFTEEEEQALRTLQELFGSKILDY 118

Query: 140 MIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGK 199
           MIVVFT  D+LED+   L+DYL   CP+ LKE+L+ C  R VLF+NK  D  ++ EQV +
Sbjct: 119 MIVVFTRKDDLEDDS--LDDYLSDGCPEFLKEVLRECGGRYVLFNNK-ADGEEKEEQVQQ 175

Query: 200 LLSLVNSVIVQNGGQPYTDEIFAELK 225
           LL+LV +++ +NGG+PYT++++ ++K
Sbjct: 176 LLALVEAIVKENGGKPYTNDLYEKIK 201

Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria. Length = 211

>gnl|CDD|206651 cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)

 Score =  274 bits (704), Expect = 1e-94
 Identities = 101/206 (49%), Positives = 145/206 (70%), Gaps = 6/206 (2%)

Query: 20  RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79
             LVLVG+TGNGKSAT N+ILG++ F+SK  +SGVTKTC+ +  +  DG+ VNVIDTPGL
Sbjct: 1   LRLVLVGKTGNGKSATGNTILGRKVFESKLSASGVTKTCQKESAVW-DGRRVNVIDTPGL 59

Query: 80  FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDY 139
           FD+S   E +SKEI++C+ ++  G HA L+V  +  RF+EEE  A+  L+ LFG+K+ D+
Sbjct: 60  FDTSVSPEQLSKEIIRCLSLSAPGPHAFLLVVPLG-RFTEEEEQAVEELQELFGEKVLDH 118

Query: 140 MIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGK 199
            IV+FT GD+LE    +LEDYL   C   LK +L+ C  R V F+NK K   ++ +QV +
Sbjct: 119 TIVLFTRGDDLE--GGSLEDYLEDSCE-ALKRLLEKCGGRYVAFNNKAKG-REQEQQVKE 174

Query: 200 LLSLVNSVIVQNGGQPYTDEIFAELK 225
           LL+ V  ++ +NGG+PYT+E++ E +
Sbjct: 175 LLAKVEEMVRENGGKPYTNEMYEEAE 200

This group represents Arabidoposis protein AIG1 (avrRpt2-induced gene 1) that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). Length = 201

>gnl|CDD|206652 cd01853, Toc34_like, Translocon at the Outer-envelope membrane of Chloroplasts 34-like (Toc34-like)

 Score = 62.3 bits (152), Expect = 9e-12
 Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 9/129 (6%)

Query: 21  NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF 80
            ++++G+TG GKS+T NSI G+R     A  S   +  E+ RT+  DG  +N+IDTPGL 
Sbjct: 33  TILVLGKTGVGKSSTINSIFGERKVSVSAFQSETLRPREVSRTV--DGFKLNIIDTPGLL 90

Query: 81  DSSADSEFVSKEIVKCIG--MTKDGIHAVLVV--FSVRNRFSEEEGAAIHILESLFGKKI 136
           +S    + V+++I+  I   + K  I  VL V    +    + +      I +S FG  I
Sbjct: 91  ESQ--DQRVNRKILSIIKRFLKKKTIDVVLYVDRLDMYRVDNLDVPLLRAITDS-FGPSI 147

Query: 137 SDYMIVVFT 145
               IVV T
Sbjct: 148 WRNAIVVLT 156

The Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. Length = 248

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 55.9 bits (135), Expect = 5e-10
 Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 14/151 (9%)

Query: 23  VLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQV-VNVIDTPGLFD 81
           V+VGR G GKS+  N++LG       +   G T+  ++    L  G+V + ++DTPGL +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGE-VGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDE 59

Query: 82  SSA-DSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYM 140
                 E +++ +++       G   +L+V    +R SEE+ A + IL  L  + I   +
Sbjct: 60  FGGLGREELARLLLR-------GADLILLVVDSTDRESEED-AKLLILRRLRKEGI--PI 109

Query: 141 IVVFTGGDELEDNDETLEDYLGRECPKPLKE 171
           I+V    D L +  E  E     E  K L  
Sbjct: 110 ILVGNKID-LLEEREVEELLRLEELAKILGV 139

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 52.6 bits (127), Expect = 8e-09
 Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 13/134 (9%)

Query: 23  VLVGRTGNGKSATANSILGKRAFK-SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81
            + GR   GKS+  N++LG+     S     G T+    +   L     V +IDTPGL +
Sbjct: 1   AIFGRPNVGKSSLLNALLGQNVGIVSPI--PGTTRDPVRKEWELLPLGPVVLIDTPGLDE 58

Query: 82  SSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMI 141
                    +E  +      D    VL+V        EEE  A   L    GK +    +
Sbjct: 59  EGGLGRERVEEARQVA----DRADLVLLVVDSDLTPVEEE--AKLGLLRERGKPV----L 108

Query: 142 VVFTGGDELEDNDE 155
           +V    D + +++E
Sbjct: 109 LVLNKIDLVPESEE 122

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|233224 TIGR00993, 3a0901s04IAP86, chloroplast protein import component Toc86/159, G and M domains

 Score = 50.7 bits (121), Expect = 2e-07
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 21  NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF 80
           N++++G++G GKSAT NSI G+  F + A   G T   E++  +   G  + VIDTPGL 
Sbjct: 120 NILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLV--QGVKIRVIDTPGLK 177

Query: 81  DSSADSEFVSK 91
            S++D     K
Sbjct: 178 SSASDQSKNEK 188

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M [Transport and binding proteins, Amino acids, peptides and amines]. Length = 763

>gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins

 Score = 48.3 bits (116), Expect = 4e-07
 Identities = 35/141 (24%), Positives = 56/141 (39%), Gaps = 27/141 (19%)

Query: 21  NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVT----KTCEMQRTMLKDGQVVNVIDT 76
            L +VG    GKS   N++LG+         +GVT        ++  +LK    V ++DT
Sbjct: 2   LLAVVGEFSAGKSTLLNALLGEEVLP-----TGVTPTTAVITVLRYGLLKG---VVLVDT 53

Query: 77  PGLFDSSADS--EFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK 134
           PGL +S+ +   E     + +          AV+ V S     +E E   +  +    GK
Sbjct: 54  PGL-NSTIEHHTEITESFLPRA--------DAVIFVLSADQPLTESEREFLKEILKWSGK 104

Query: 135 KISDYMIVVFTGGDELEDNDE 155
           KI      V    D L + + 
Sbjct: 105 KI----FFVLNKIDLLSEEEL 121

The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180

>gnl|CDD|130064 TIGR00991, 3a0901s02IAP34, GTP-binding protein (Chloroplast Envelope Protein Translocase)

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 11/128 (8%)

Query: 22  LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD 81
           ++++G+ G GKS+T NSI+G+R     A  S   +   + RT  + G  +N+IDTPGL +
Sbjct: 41  ILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRT--RAGFTLNIIDTPGLIE 98

Query: 82  SSADSEFVSKEIVK--CIGMTKDGIHAV--LVVFSVRNRFSEEEGAAIHILESLFGKKIS 137
               ++  +  I+K   +G T D +  V  L  + V       +G  I  +   FGK I 
Sbjct: 99  GGYIND-QAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTL----DGQVIRAITDSFGKDIW 153

Query: 138 DYMIVVFT 145
              +VV T
Sbjct: 154 RKSLVVLT 161

[Transport and binding proteins, Nucleosides, purines and pyrimidines]. Length = 313

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 9/123 (7%)

Query: 23  VLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDS 82
            LVGR   GKS   N++ G +     +   G T+  +    +L  G+ + ++DTPGL + 
Sbjct: 3   ALVGRPNVGKSTLINALTGAKVAIV-SDYPGTTR--DPILGVLGLGRQIILVDTPGLIEG 59

Query: 83  SADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIV 142
           +++ + V +   + +   ++    +L+V       +E++   +  LE L  K     +I+
Sbjct: 60  ASEGKGV-EGFNRFLEAIRE-ADLILLVVDASEGLTEDDEEILEELEKLPKKP----IIL 113

Query: 143 VFT 145
           V  
Sbjct: 114 VLN 116

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|206649 cd01850, CDC_Septin, CDC/Septin GTPase family

 Score = 42.9 bits (102), Expect = 4e-05
 Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 9/85 (10%)

Query: 21 NLVLVGRTGNGKSATANSILGKRAFKSK---AGSSGVTKTCEMQRTM--LKDGQV---VN 72
          N+++VG +G GKS   N++ G + + SK   A    +TKT E++ +   L++  V   + 
Sbjct: 6  NIMVVGESGLGKSTFINTLFGTKLYPSKYPPAPGEHITKTVEIKISKAELEENGVKLKLT 65

Query: 73 VIDTPGLFDSSADSEFVSKEIVKCI 97
          VIDTPG  D+  ++    K IV  I
Sbjct: 66 VIDTPGFGDNI-NNSDCWKPIVDYI 89

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. Length = 275

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 30/124 (24%), Positives = 46/124 (37%), Gaps = 11/124 (8%)

Query: 19  ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQV-VNVIDTP 77
           E  +V+VG    GKS   N +LG +   ++    G T+                N++DT 
Sbjct: 1   EIKIVIVGDPNVGKSTLLNRLLGNKISITEYK-PGTTRNYVTTVIEEDGKTYKFNLLDTA 59

Query: 78  GLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILES-----LF 132
           G  D  A      + +   + +  D +  VL    V     ++    IH  ES     L 
Sbjct: 60  GQEDYDAIRRLYYRAVESSLRVF-DIVILVL---DVEEILEKQTKEIIHHAESGVPIILV 115

Query: 133 GKKI 136
           G KI
Sbjct: 116 GNKI 119

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|201420 pfam00735, Septin, Septin

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 9/85 (10%)

Query: 21 NLVLVGRTGNGKSATANSILGK-----RAFKSKAGSSGVTKTCEMQRTMLKDGQV---VN 72
           L++VG +G GK+   N++        R     +     T   +     +++  V   + 
Sbjct: 6  TLMVVGESGLGKTTLINTLFLTDLIPERGIPGPSEKIKKTVEIKATTVEIEEDGVKLNLT 65

Query: 73 VIDTPGLFDSSADSEFVSKEIVKCI 97
          VIDTPG F  + D+    K IV+ I
Sbjct: 66 VIDTPG-FGDAIDNSNCWKPIVEYI 89

Members of this family include CDC3, CDC10, CDC11 and CDC12/Septin. Members of this family bind GTP. As regards the septins, these are polypeptides of 30-65kDa with three characteristic GTPase motifs (G-1, G-3 and G-4) that are similar to those of the Ras family. The G-4 motif is strictly conserved with a unique septin consensus of AKAD. Most septins are thought to have at least one coiled-coil region, which in some cases is necessary for intermolecular interactions that allow septins to polymerise to form rod-shaped complexes. In turn, these are arranged into tandem arrays to form filaments. They are multifunctional proteins, with roles in cytokinesis, sporulation, germ cell development, exocytosis and apoptosis. Length = 280

>gnl|CDD|226124 COG3596, COG3596, Predicted GTPase [General function prediction only]

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 42/197 (21%), Positives = 75/197 (38%), Gaps = 30/197 (15%)

Query: 21  NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF 80
           N++L+G TG GKS+  N++        +    GV      +  +  DG+ + + DTPGL 
Sbjct: 41  NVLLMGATGAGKSSLINALFQGEV--KEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLG 98

Query: 81  DS-SADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDY 139
           D    D+E           + K  +  VL +    +R     G     L  +    +   
Sbjct: 99  DGKDKDAEHRQLYRDY---LPK--LDLVLWLIKADDRA---LGTDEDFLRDVIILGLDKR 150

Query: 140 MIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGK 199
           ++ V T  D  E   E   D  G +    +K+ ++                 ++ E +G+
Sbjct: 151 VLFVVTQADRAEPGREW--DSAGHQPSPAIKQFIE-----------------EKAEALGR 191

Query: 200 LLSLVNSVIVQNGGQPY 216
           L   V  V+  +G  P+
Sbjct: 192 LFQEVKPVVAVSGRLPW 208

Length = 296

>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 10/86 (11%)

Query: 21  NLVLVGRTGNGKSATANSILGKRAFKSKAG----SSGVTKTCEMQRTML---KDGQV--V 71
            +++VG +G GK+   N++ G             + G + T E++ T     +DG    +
Sbjct: 25  TIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNL 84

Query: 72  NVIDTPGLFDSSADSEFVSKEIVKCI 97
            VIDTPG F    D+    + IV  I
Sbjct: 85  TVIDTPG-FGDFIDNSKCWEPIVDYI 109

Length = 373

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	225
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	100.0
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	100.0
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.92
COG1160	444	Predicted GTPases [General function prediction onl	99.91
COG1159	298	Era GTPase [General function prediction only]	99.91
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.9
COG0218	200	Predicted GTPase [General function prediction only	99.9
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.89
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.88
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.87
COG1160	444	Predicted GTPases [General function prediction onl	99.87
PRK12298	390	obgE GTPase CgtA; Reviewed	99.87
PRK12299	335	obgE GTPase CgtA; Reviewed	99.86
PRK15494	339	era GTPase Era; Provisional	99.85
PRK12297	424	obgE GTPase CgtA; Reviewed	99.85
PRK00089	292	era GTPase Era; Reviewed	99.85
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.84
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.84
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.84
PRK00093	435	GTP-binding protein Der; Reviewed	99.84
PRK12296	500	obgE GTPase CgtA; Reviewed	99.84
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.83
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.83
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.83
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.83
PRK03003	472	GTP-binding protein Der; Reviewed	99.83
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.83
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.83
PRK03003	472	GTP-binding protein Der; Reviewed	99.83
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.82
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.82
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.82
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.81
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.81
COG0486	454	ThdF Predicted GTPase [General function prediction	99.81
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.81
COG3596	296	Predicted GTPase [General function prediction only	99.81
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.81
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.81
PRK00093	435	GTP-binding protein Der; Reviewed	99.8
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.8
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.8
PRK04213	201	GTP-binding protein; Provisional	99.8
cd00881	189	GTP_translation_factor GTP translation factor fami	99.8
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.79
PRK11058	426	GTPase HflX; Provisional	99.78
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.78
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.78
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.78
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.78
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.77
COG0536	369	Obg Predicted GTPase [General function prediction	99.77
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.77
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.77
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.76
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.76
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.76
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.76
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.76
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.76
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.76
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.76
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.76
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.76
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.76
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.76
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.76
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.76
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.76
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.76
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.76
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.76
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.76
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.75
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.75
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.75
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.75
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.75
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.75
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.75
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.75
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.75
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.75
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.75
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.74
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.74
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.74
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.74
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.74
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.74
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.74
PTZ00133	182	ADP-ribosylation factor; Provisional	99.74
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.74
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.74
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.74
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.74
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.74
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.74
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.74
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.73
PLN00223	181	ADP-ribosylation factor; Provisional	99.73
PRK12317	425	elongation factor 1-alpha; Reviewed	99.73
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.73
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.73
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.73
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.73
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.73
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.73
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.73
PRK05306	787	infB translation initiation factor IF-2; Validated	99.73
COG1084	346	Predicted GTPase [General function prediction only	99.73
COG2262	411	HflX GTPases [General function prediction only]	99.73
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.73
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.73
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.73
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.72
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.72
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.72
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.72
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.72
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.72
PLN03118	211	Rab family protein; Provisional	99.72
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.72
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.72
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.72
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.71
CHL00071	409	tufA elongation factor Tu	99.71
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.71
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.71
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.71
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.71
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.71
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.71
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.71
PTZ00369	189	Ras-like protein; Provisional	99.71
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.71
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.71
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.7
PLN03127	447	Elongation factor Tu; Provisional	99.7
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.7
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.7
PLN03110	216	Rab GTPase; Provisional	99.7
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.7
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.7
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.7
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.69
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.69
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.69
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.69
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.69
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.69
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.69
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.69
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.69
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.69
PRK12735	396	elongation factor Tu; Reviewed	99.68
PRK12736	394	elongation factor Tu; Reviewed	99.68
CHL00189	742	infB translation initiation factor 2; Provisional	99.68
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.68
PLN03108	210	Rab family protein; Provisional	99.68
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.68
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.68
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.68
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.68
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.68
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.68
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.68
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.67
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.67
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.67
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.67
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.67
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.67
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.67
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.67
PRK00049	396	elongation factor Tu; Reviewed	99.66
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.66
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.66
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.66
PRK09866	741	hypothetical protein; Provisional	99.66
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.66
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.66
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.66
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.66
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.66
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.66
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.65
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.65
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.65
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.65
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.65
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.65
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.65
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.65
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.65
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.64
PRK10218	607	GTP-binding protein; Provisional	99.64
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.64
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.64
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.63
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.63
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.63
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.63
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.62
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.62
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.62
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.62
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.62
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.62
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.62
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.61
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.61
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.61
COG1163	365	DRG Predicted GTPase [General function prediction	99.61
PTZ00141	446	elongation factor 1- alpha; Provisional	99.61
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.61
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.6
PLN03126	478	Elongation factor Tu; Provisional	99.6
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.6
PRK04004	586	translation initiation factor IF-2; Validated	99.6
PRK05433	600	GTP-binding protein LepA; Provisional	99.6
KOG1145	683	consensus Mitochondrial translation initiation fac	99.59
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.59
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.59
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.59
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.59
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.59
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.58
PRK00007	693	elongation factor G; Reviewed	99.58
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.57
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.57
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.57
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.57
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.56
PRK12739	691	elongation factor G; Reviewed	99.56
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.56
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.55
COG2229	187	Predicted GTPase [General function prediction only	99.54
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.54
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.52
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.51
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.51
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.51
PRK13351	687	elongation factor G; Reviewed	99.51
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.5
PLN00043	447	elongation factor 1-alpha; Provisional	99.5
PLN00023	334	GTP-binding protein; Provisional	99.5
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.49
COG1100	219	GTPase SAR1 and related small G proteins [General	99.49
KOG0394	210	consensus Ras-related GTPase [General function pre	99.47
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.47
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.46
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.46
PRK09602	396	translation-associated GTPase; Reviewed	99.45
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.45
PTZ00416	836	elongation factor 2; Provisional	99.45
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.42
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.41
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.4
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.4
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.39
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.39
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	99.38
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.38
PTZ00258	390	GTP-binding protein; Provisional	99.38
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.38
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.38
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.37
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.36
PRK09601	364	GTP-binding protein YchF; Reviewed	99.36
KOG2486	320	consensus Predicted GTPase [General function predi	99.36
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.36
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.35
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.33
KOG0395	196	consensus Ras-related GTPase [General function pre	99.33
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	99.32
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.31
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.3
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.3
PRK12740	668	elongation factor G; Reviewed	99.29
PRK13768	253	GTPase; Provisional	99.29
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.27
PRK07560	731	elongation factor EF-2; Reviewed	99.26
KOG0410	410	consensus Predicted GTP binding protein [General f	99.26
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.26
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.25
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.25
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.24
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	99.23
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.23
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.22
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.22
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.2
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	99.18
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.18
KOG0090	238	consensus Signal recognition particle receptor, be	99.16
PRK14845	1049	translation initiation factor IF-2; Provisional	99.15
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.15
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	99.14
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.13
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.12
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	99.09
PRK09563	287	rbgA GTPase YlqF; Reviewed	99.09
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	99.08
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.08
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.06
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.06
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	99.04
KOG0460	449	consensus Mitochondrial translation elongation fac	99.04
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.03
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	99.02
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.01
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.0
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.0
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	98.99
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	98.98
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.97
PTZ00099	176	rab6; Provisional	98.96
PRK12288	347	GTPase RsgA; Reviewed	98.96
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	98.95
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.95
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.94
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.94
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	98.93
COG1161	322	Predicted GTPases [General function prediction onl	98.93
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.89
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.89
PRK12289	352	GTPase RsgA; Reviewed	98.88
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.88
KOG3886	295	consensus GTP-binding protein [Signal transduction	98.86
COG1162	301	Predicted GTPases [General function prediction onl	98.86
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.86
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.85
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.84
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.84
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.83
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	98.82
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.81
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.8
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.77
PRK13796	365	GTPase YqeH; Provisional	98.75
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.75
PRK00098	298	GTPase RsgA; Reviewed	98.74
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.74
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	98.7
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	98.7
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.7
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.68
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.67
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.66
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.62
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.61
COG3523	1188	IcmF Type VI protein secretion system component Va	98.6
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.58
PRK14974	336	cell division protein FtsY; Provisional	98.58
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.58
PRK10416	318	signal recognition particle-docking protein FtsY;	98.56
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.56
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.54
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	98.54
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	98.52
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.51
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.51
cd03112	158	CobW_like The function of this protein family is u	98.5
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.49
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	98.48
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	98.47
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	98.47
KOG0082	354	consensus G-protein alpha subunit (small G protein	98.4
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.38
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.37
KOG1673	205	consensus Ras GTPases [General function prediction	98.36
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	98.35
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	98.35
KOG2484	435	consensus GTPase [General function prediction only	98.34
KOG3887	347	consensus Predicted small GTPase involved in nucle	98.33
KOG2423	572	consensus Nucleolar GTPase [General function predi	98.27
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.25
PRK10867	433	signal recognition particle protein; Provisional	98.23
TIGR00959	428	ffh signal recognition particle protein. This mode	98.15
KOG1143	591	consensus Predicted translation elongation factor	98.13
KOG0446	657	consensus Vacuolar sorting protein VPS1, dynamin,	98.12
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	98.11
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	98.1
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.05
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	98.05
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	98.03
PRK01889	356	GTPase RsgA; Reviewed	98.03
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.0
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.0
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	98.0
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	97.99
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.93
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.93
cd03114	148	ArgK-like The function of this protein family is u	97.92
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	97.91
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	97.89
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	97.88
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.86
PF02263	260	GBP: Guanylate-binding protein, N-terminal domain;	97.85
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	97.83
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.81
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	97.8
COG0488	530	Uup ATPase components of ABC transporters with dup	97.79
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	97.79
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.78
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	97.76
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	97.73
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	97.69
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	97.68
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	97.67
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.66
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	97.66
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.65
COG4988	559	CydD ABC-type transport system involved in cytochr	97.65
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.64
COG0523	323	Putative GTPases (G3E family) [General function pr	97.62
cd03216	163	ABC_Carb_Monos_I This family represents the domain	97.62
KOG1533	290	consensus Predicted GTPase [General function predi	97.59
PF00004	132	AAA: ATPase family associated with various cellula	97.59
PRK13695	174	putative NTPase; Provisional	97.58
PRK09563	287	rbgA GTPase YlqF; Reviewed	97.58
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.58
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	97.56
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	97.56
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.56
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.55
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.55
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.55
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	97.55
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.54
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.54
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	97.54
cd03246	173	ABCC_Protease_Secretion This family represents the	97.53
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	97.52
COG0488	530	Uup ATPase components of ABC transporters with dup	97.51
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	97.5
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	97.5
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	97.5
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.5
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	97.49
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.48
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.48
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	97.48
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	97.47
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.41
cd03215	182	ABC_Carb_Monos_II This family represents domain II	97.4
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	97.38
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	97.34
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.34
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	97.33
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.33
KOG0781	587	consensus Signal recognition particle receptor, al	97.31
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.31
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.3
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	97.28
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	97.27
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	97.26
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.25
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	97.24
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	97.23
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	97.22
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	97.22
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.22
PRK14738	206	gmk guanylate kinase; Provisional	97.22
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.21
COG4525	259	TauB ABC-type taurine transport system, ATPase com	97.2
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	97.2
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.19
COG4962	355	CpaF Flp pilus assembly protein, ATPase CpaF [Intr	97.19
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	97.18
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	97.18
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	97.18
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	97.17
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	97.17
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	97.17
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	97.17
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.17
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.16
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	97.15
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.15
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	97.15
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.15
cd03269	210	ABC_putative_ATPase This subfamily is involved in	97.15
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	97.14
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.14
PRK07261	171	topology modulation protein; Provisional	97.13
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.13
PRK14737	186	gmk guanylate kinase; Provisional	97.13
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	97.12
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	97.12
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	97.11
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	97.11
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	97.11
PRK05480	209	uridine/cytidine kinase; Provisional	97.11
COG3638	258	ABC-type phosphate/phosphonate transport system, A	97.11
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	97.1
PRK13851	344	type IV secretion system protein VirB11; Provision	97.1
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.1
KOG0054	1381	consensus Multidrug resistance-associated protein/	97.1

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=100.00  E-value=5e-39  Score=248.78  Aligned_cols=202  Identities=44%  Similarity=0.765  Sum_probs=172.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (225)
                      ++|+|+|.+|+||||++|+|+|...+.......+.|..|..+...+ .+..+.||||||+.+....++++.+++.+++..
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~   79 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL   79 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence            5899999999999999999999999888777778899999998888 999999999999998887778888999999988


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc
Q 036158          100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR  179 (225)
Q Consensus       100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (225)
                      ..+++|+||||++.+ +++..++..++.+.+.||.+..++++||+|++|...+.  .++++++...+..++++++.|+.|
T Consensus        80 ~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~--~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   80 CSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDD--SLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             TTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTT--THHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             ccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccc--cHHHHHhccCchhHhHHhhhcCCE
Confidence            999999999999998 99999999999999999999999999999999988886  688898864567799999999999


Q ss_pred             EEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCCCHHHHhhcC
Q 036158          180 CVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK  225 (225)
Q Consensus       180 ~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~~~~~~~~~~  225 (225)
                      |+.|++......+...|+.+|+++|.+|++++++.+|++++|++++
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~~~  202 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNEMFEEAE  202 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHHHH
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHH
Confidence            9999998554556679999999999999999999999999999864

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=100.00  E-value=3e-37  Score=236.53  Aligned_cols=196  Identities=51%  Similarity=0.845  Sum_probs=176.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (225)
                      ++|+|+|.+|+|||||+|+|+|...+.+.....+.|..++.....+ .+..+.|+||||+.+.......+...+.+++..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~   79 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL   79 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence            4799999999999999999999998777666678899999988888 889999999999998876666777788888888


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc
Q 036158          100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR  179 (225)
Q Consensus       100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (225)
                      +.+++|++|+|++++ +++..+...++.+++.|+....+++++|+|++|.+...  .+++++.. ....++.+++.|+.+
T Consensus        80 ~~~g~~~illVi~~~-~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~--~~~~~~~~-~~~~l~~l~~~c~~r  155 (196)
T cd01852          80 SAPGPHAFLLVVPLG-RFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGG--TLEDYLEN-SCEALKRLLEKCGGR  155 (196)
T ss_pred             cCCCCEEEEEEEECC-CcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCC--cHHHHHHh-ccHHHHHHHHHhCCe
Confidence            889999999999998 49999999999999999988889999999999998775  88888888 457899999999999


Q ss_pred             EEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCCCHHHH
Q 036158          180 CVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIF  221 (225)
Q Consensus       180 ~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~~~~~~  221 (225)
                      |+.|++..+ ++..+.|+.+|+++|.+|++++++.+|+++||
T Consensus       156 ~~~f~~~~~-~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~~~~  196 (196)
T cd01852         156 YVAFNNKAK-GEEQEQQVKELLAKVESMVKENGGKPYTNDMY  196 (196)
T ss_pred             EEEEeCCCC-cchhHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence            999999987 77889999999999999999999999999875

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.92  E-value=3.2e-23  Score=165.61  Aligned_cols=197  Identities=22%  Similarity=0.287  Sum_probs=141.2

Q ss_pred             CCCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHH
Q 036158           13 TSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKE   92 (225)
Q Consensus        13 ~~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~   92 (225)
                      .+...+.++|+++|.+|+||||++|+|+|...+..+. ..+.+..+....... .+..+.||||||+.+....+++....
T Consensus        32 ~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~-f~s~t~~~~~~~~~~-~G~~l~VIDTPGL~d~~~~~e~~~~~  109 (313)
T TIGR00991        32 KEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSA-FQSEGLRPMMVSRTR-AGFTLNIIDTPGLIEGGYINDQAVNI  109 (313)
T ss_pred             ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccC-CCCcceeEEEEEEEE-CCeEEEEEECCCCCchHHHHHHHHHH
Confidence            3445678999999999999999999999998654432 233344433344455 78899999999999764434444333


Q ss_pred             HHHHHhhcCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158           93 IVKCIGMTKDGIHAVLVVFSVR-NRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE  171 (225)
Q Consensus        93 ~~~~~~~~~~~~~~ii~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~  171 (225)
                      +..++.  ..++|++|||.+.+ .+++..+...++.+++.||.+...++++|+||+|..++...+.++|+.+ +...+++
T Consensus       110 ik~~l~--~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~-~~~~lq~  186 (313)
T TIGR00991       110 IKRFLL--GKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSK-RSEALLR  186 (313)
T ss_pred             HHHHhh--cCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHh-cHHHHHH
Confidence            333322  24799999997764 3688888999999999999999999999999999887666789999988 8888999


Q ss_pred             HHHHcC-----------CcEEEeeCCCcccc--------ccHH-HHHHHHHHHHHHHHHcCCC
Q 036158          172 ILQLCD-----------NRCVLFDNKTKDTA--------KRTE-QVGKLLSLVNSVIVQNGGQ  214 (225)
Q Consensus       172 ~~~~~~-----------~~~~~~~~~~~~~~--------~~~~-~v~~l~~~i~~~~~~~~~~  214 (225)
                      +++.+.           .++.++.|...+..        .++. =+..|++.|.++.....++
T Consensus       187 ~i~~~~~~~~~~~~~~~~pv~lven~~~c~~n~~ge~vlp~g~~w~~~l~~~~~~~~~~~~~~  249 (313)
T TIGR00991       187 VIHSGAGLKKRDYQDFPIPVALVENSGRCKKNESDEKILPDGTPWIPKLMKEITEVISNGSKP  249 (313)
T ss_pred             HHHHHhcccccccccccCCEEEEecCCcccCCCCCCeECCCCCccHHHHHHHHHHHHhCCCCC
Confidence            988653           23345555433221        0111 3568888888887664443

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.91  E-value=7.7e-24  Score=174.46  Aligned_cols=162  Identities=22%  Similarity=0.270  Sum_probs=133.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (225)
                      +.|+++|++|+|||||+|+|++.....+ +..+++|++..+...+| .+..+.++||+|+.+..  .+.+.+.+......
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV-~D~pGvTRDr~y~~~~~-~~~~f~lIDTgGl~~~~--~~~l~~~i~~Qa~~   79 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIV-SDTPGVTRDRIYGDAEW-LGREFILIDTGGLDDGD--EDELQELIREQALI   79 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEe-ecCCCCccCCccceeEE-cCceEEEEECCCCCcCC--chHHHHHHHHHHHH
Confidence            7899999999999999999999998766 56899999999999999 88889999999998542  35677778888878


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc
Q 036158          100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR  179 (225)
Q Consensus       100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (225)
                      +...+|++|||+|+..++++.|..+.++|+..     ++|+++|+||+|..+.. ....+|+..                
T Consensus        80 Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~-----~kpviLvvNK~D~~~~e-~~~~efysl----------------  137 (444)
T COG1160          80 AIEEADVILFVVDGREGITPADEEIAKILRRS-----KKPVILVVNKIDNLKAE-ELAYEFYSL----------------  137 (444)
T ss_pred             HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEEcccCchhh-hhHHHHHhc----------------
Confidence            88899999999999989999999999999842     38999999999976332 122222211                


Q ss_pred             EEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          180 CVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       180 ~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                        .|....+.||.++.++.+|++.+.+.++
T Consensus       138 --G~g~~~~ISA~Hg~Gi~dLld~v~~~l~  165 (444)
T COG1160         138 --GFGEPVPISAEHGRGIGDLLDAVLELLP  165 (444)
T ss_pred             --CCCCceEeehhhccCHHHHHHHHHhhcC
Confidence              2445567788999999999999988874

>COG1159 Era GTPase [General function prediction only]

Probab=99.91  E-value=1.8e-23  Score=163.77  Aligned_cols=179  Identities=16%  Similarity=0.231  Sum_probs=134.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .....|+++|+||+|||||+|+|+|.+...+++ .+.+|+..-..-+.. +...++++||||+...   ...+.+.+.+.
T Consensus         4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~-k~QTTR~~I~GI~t~-~~~QiIfvDTPGih~p---k~~l~~~m~~~   78 (298)
T COG1159           4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSP-KPQTTRNRIRGIVTT-DNAQIIFVDTPGIHKP---KHALGELMNKA   78 (298)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecC-CcchhhhheeEEEEc-CCceEEEEeCCCCCCc---chHHHHHHHHH
Confidence            345679999999999999999999999877743 455555554444444 7889999999999855   55666777888


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      +..+...+|+++||+|+++.+...+...++.++..     ..|+++++||+|...+.. .+...         .+.... 
T Consensus        79 a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~-----~~pvil~iNKID~~~~~~-~l~~~---------~~~~~~-  142 (298)
T COG1159          79 ARSALKDVDLILFVVDADEGWGPGDEFILEQLKKT-----KTPVILVVNKIDKVKPKT-VLLKL---------IAFLKK-  142 (298)
T ss_pred             HHHHhccCcEEEEEEeccccCCccHHHHHHHHhhc-----CCCeEEEEEccccCCcHH-HHHHH---------HHHHHh-
Confidence            88889999999999999977999898888888872     269999999999887641 01121         111111 


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCCCHHH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEI  220 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~~~~~  220 (225)
                         ...|....+.||.++.+++.|++.+.+.+++..- +|.+++
T Consensus       143 ---~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~-~yp~d~  182 (298)
T COG1159         143 ---LLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPW-YYPEDQ  182 (298)
T ss_pred             ---hCCcceEEEeeccccCCHHHHHHHHHHhCCCCCC-cCChhh
Confidence               1124466677888999999999999999887643 444444

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.90  E-value=2.3e-22  Score=172.66  Aligned_cols=163  Identities=24%  Similarity=0.327  Sum_probs=124.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCc---HHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS---EFVSKEI   93 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~---~~~~~~~   93 (225)
                      .-.++|+|+|.||+||||++|+|+|...+.+....++ |+.+......+ .+..+.||||||+.+.....   .++...+
T Consensus       116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~-TTr~~ei~~~i-dG~~L~VIDTPGL~dt~~dq~~neeILk~I  193 (763)
T TIGR00993       116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMG-TTSVQEIEGLV-QGVKIRVIDTPGLKSSASDQSKNEKILSSV  193 (763)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCC-ceEEEEEEEEE-CCceEEEEECCCCCccccchHHHHHHHHHH
Confidence            3457899999999999999999999987766543444 44454444455 78899999999999875332   2333333


Q ss_pred             HHHHhhcCCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC-----cccHHHHhhhcCCc
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRN-RFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN-----DETLEDYLGRECPK  167 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~-----~~~~~~~~~~~~~~  167 (225)
                      ..++.  ..++|++|||.+.+. +.+.++...++.|++.||.+.+++++||+|++|..+++     +.+.++|+.+ +..
T Consensus       194 k~~Ls--k~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~-rs~  270 (763)
T TIGR00993       194 KKFIK--KNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQ-RSH  270 (763)
T ss_pred             HHHHh--cCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhh-ChH
Confidence            33333  236899999998762 33346778999999999999999999999999999743     2579999988 888


Q ss_pred             hHHHHHHHcCCcEEEee
Q 036158          168 PLKEILQLCDNRCVLFD  184 (225)
Q Consensus       168 ~~~~~~~~~~~~~~~~~  184 (225)
                      .++++|+.|..+++.++
T Consensus       271 ~Lq~~Irq~~g~~~l~n  287 (763)
T TIGR00993       271 IVQQAIGQAVGDLRLMN  287 (763)
T ss_pred             HHHHHHHHhcCcceecc
Confidence            89999999998766655

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.90  E-value=3.4e-22  Score=148.83  Aligned_cols=172  Identities=19%  Similarity=0.280  Sum_probs=121.8

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcH---HHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSE---FVSKE   92 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~---~~~~~   92 (225)
                      ....+.|+++|++|+|||||||+|++.......+..+|.|+....+.+.    ..+.++|.||++-...+.+   .....
T Consensus        21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~----~~~~lVDlPGYGyAkv~k~~~e~w~~~   96 (200)
T COG0218          21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD----DELRLVDLPGYGYAKVPKEVKEKWKKL   96 (200)
T ss_pred             CCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec----CcEEEEeCCCcccccCCHHHHHHHHHH
Confidence            3466899999999999999999999977544556688888888776653    2388999999997765542   23334


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158           93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI  172 (225)
Q Consensus        93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (225)
                      +..++.... ...++++++|+.+.....|.++++++.+.     ..|++||+||+|+++..  .....+..     +++.
T Consensus        97 i~~YL~~R~-~L~~vvlliD~r~~~~~~D~em~~~l~~~-----~i~~~vv~tK~DKi~~~--~~~k~l~~-----v~~~  163 (200)
T COG0218          97 IEEYLEKRA-NLKGVVLLIDARHPPKDLDREMIEFLLEL-----GIPVIVVLTKADKLKKS--ERNKQLNK-----VAEE  163 (200)
T ss_pred             HHHHHhhch-hheEEEEEEECCCCCcHHHHHHHHHHHHc-----CCCeEEEEEccccCChh--HHHHHHHH-----HHHH
Confidence            444444433 37899999999988999999999999885     38999999999999875  33322222     2222


Q ss_pred             H-HHcCCc--EEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          173 L-QLCDNR--CVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       173 ~-~~~~~~--~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      + ......  +..|      |+..+.++++|...|.+.+.+
T Consensus       164 l~~~~~~~~~~~~~------ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         164 LKKPPPDDQWVVLF------SSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             hcCCCCccceEEEE------ecccccCHHHHHHHHHHHhhc
Confidence            2 111222  2222      233457899999999887654

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.89  E-value=7.8e-22  Score=155.47  Aligned_cols=135  Identities=26%  Similarity=0.309  Sum_probs=105.4

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCC---CcHHHHH
Q 036158           15 PSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA---DSEFVSK   91 (225)
Q Consensus        15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~---~~~~~~~   91 (225)
                      .....++|+|+|.+|+|||||+|+|++...+.+. ...+.|..+..+...+ ++..+.||||||+.+...   .++++..
T Consensus        27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~-~~~~~T~~~~~~~~~~-~g~~i~vIDTPGl~~~~~~~~~~~~~~~  104 (249)
T cd01853          27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATS-AFQSETLRVREVSGTV-DGFKLNIIDTPGLLESVMDQRVNRKILS  104 (249)
T ss_pred             hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCceEEEEEEEEEE-CCeEEEEEECCCcCcchhhHHHHHHHHH
Confidence            3466799999999999999999999998876553 3455677777777776 788999999999997742   1233334


Q ss_pred             HHHHHHhhcCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158           92 EIVKCIGMTKDGIHAVLVVFSVR-NRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN  153 (225)
Q Consensus        92 ~~~~~~~~~~~~~~~ii~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~  153 (225)
                      .+.+++..  ..+|+++||..++ .+.+..+..+++.+.+.|+.+...++++|+||+|..++.
T Consensus       105 ~I~~~l~~--~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~  165 (249)
T cd01853         105 SIKRYLKK--KTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD  165 (249)
T ss_pred             HHHHHHhc--cCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence            44444332  3679999998775 367788889999999999998889999999999988665

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.88  E-value=4.6e-22  Score=145.02  Aligned_cols=156  Identities=20%  Similarity=0.214  Sum_probs=104.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (225)
                      ++|+++|.+|+|||||+|+|+|.+.. . ...+++|.+.....+.+ .+..+.++||||.++......+ .+-..+++. 
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~-v-~n~pG~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~~s~e-e~v~~~~l~-   75 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQK-V-GNWPGTTVEKKEGIFKL-GDQQVELVDLPGIYSLSSKSEE-ERVARDYLL-   75 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEE-E-EESTTSSSEEEEEEEEE-TTEEEEEEE----SSSSSSSHH-HHHHHHHHH-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCce-e-cCCCCCCeeeeeEEEEe-cCceEEEEECCCcccCCCCCcH-HHHHHHHHh-
Confidence            47999999999999999999999953 3 44788999998888888 7899999999999876543321 111222322 


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc
Q 036158          100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR  179 (225)
Q Consensus       100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (225)
                       ...+|++++|+|+. .+. .+..++..+.+.     ..|+++++||+|..+.....          .....+-+..+.+
T Consensus        76 -~~~~D~ii~VvDa~-~l~-r~l~l~~ql~e~-----g~P~vvvlN~~D~a~~~g~~----------id~~~Ls~~Lg~p  137 (156)
T PF02421_consen   76 -SEKPDLIIVVVDAT-NLE-RNLYLTLQLLEL-----GIPVVVVLNKMDEAERKGIE----------IDAEKLSERLGVP  137 (156)
T ss_dssp             -HTSSSEEEEEEEGG-GHH-HHHHHHHHHHHT-----TSSEEEEEETHHHHHHTTEE----------E-HHHHHHHHTS-
T ss_pred             -hcCCCEEEEECCCC-CHH-HHHHHHHHHHHc-----CCCEEEEEeCHHHHHHcCCE----------ECHHHHHHHhCCC
Confidence             45789999999997 432 233444555543     38999999999976543111          1134444455666


Q ss_pred             EEEeeCCCccccccHHHHHHHHHHH
Q 036158          180 CVLFDNKTKDTAKRTEQVGKLLSLV  204 (225)
Q Consensus       180 ~~~~~~~~~~~~~~~~~v~~l~~~i  204 (225)
                      +..+.      +.++.++++|++.|
T Consensus       138 vi~~s------a~~~~g~~~L~~~I  156 (156)
T PF02421_consen  138 VIPVS------ARTGEGIDELKDAI  156 (156)
T ss_dssp             EEEEB------TTTTBTHHHHHHHH
T ss_pred             EEEEE------eCCCcCHHHHHhhC
Confidence            55554      44568999999875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>TIGR00436 era GTP-binding protein Era

Probab=99.87  E-value=3.8e-21  Score=154.30  Aligned_cols=166  Identities=15%  Similarity=0.201  Sum_probs=109.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT  100 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (225)
                      +|+++|.+|+|||||+|+|++.....++ ..+++|+.... .+...++..+.++||||+.+..   ....+.+.+.+..+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs-~~~~TTr~~i~-~i~~~~~~qii~vDTPG~~~~~---~~l~~~~~~~~~~~   76 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITS-PKAQTTRNRIS-GIHTTGASQIIFIDTPGFHEKK---HSLNRLMMKEARSA   76 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecC-CCCCcccCcEE-EEEEcCCcEEEEEECcCCCCCc---chHHHHHHHHHHHH
Confidence            6899999999999999999998865443 34455655433 3333366789999999998642   22333344444456


Q ss_pred             CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcE
Q 036158          101 KDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC  180 (225)
Q Consensus       101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (225)
                      ...+|++++|+|++...+. +..++..+..     ...|+++|+||+|.....  ...+.        +..+....+   
T Consensus        77 l~~aDvvl~VvD~~~~~~~-~~~i~~~l~~-----~~~p~ilV~NK~Dl~~~~--~~~~~--------~~~~~~~~~---  137 (270)
T TIGR00436        77 IGGVDLILFVVDSDQWNGD-GEFVLTKLQN-----LKRPVVLTRNKLDNKFKD--KLLPL--------IDKYAILED---  137 (270)
T ss_pred             HhhCCEEEEEEECCCCCch-HHHHHHHHHh-----cCCCEEEEEECeeCCCHH--HHHHH--------HHHHHhhcC---
Confidence            6788999999999854443 2344444443     237999999999986332  22221        222222222   


Q ss_pred             EEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          181 VLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       181 ~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                        +....+.||.++.++++|++.+.+.+++..
T Consensus       138 --~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~  167 (270)
T TIGR00436       138 --FKDIVPISALTGDNTSFLAAFIEVHLPEGP  167 (270)
T ss_pred             --CCceEEEecCCCCCHHHHHHHHHHhCCCCC
Confidence              123345677788999999999999886653

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.87  E-value=2.1e-21  Score=160.15  Aligned_cols=187  Identities=21%  Similarity=0.258  Sum_probs=139.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      ..++|+++|.+|+|||||+|+|+|+....++ ..+++|++.-...+++ +++.+.++||.|+-....-.+.+..--....
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~-~~aGTTRD~I~~~~e~-~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVS-DIAGTTRDSIDIEFER-DGRKYVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEec-CCCCccccceeeeEEE-CCeEEEEEECCCCCcccccccceEEEeehhh
Confidence            5699999999999999999999999977664 4778899998888898 8999999999998643322221110000111


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      ..+...+|++++|+|+..+++..+.++...+.+.     .+++++|+||||.++......+++..+     ++..+...+
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~-----g~~~vIvvNKWDl~~~~~~~~~~~k~~-----i~~~l~~l~  324 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQDLRIAGLIEEA-----GRGIVIVVNKWDLVEEDEATMEEFKKK-----LRRKLPFLD  324 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHc-----CCCeEEEEEccccCCchhhHHHHHHHH-----HHHHhcccc
Confidence            1344567999999999989999998888888774     489999999999988644466666555     555554444


Q ss_pred             CcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCCCHHHH
Q 036158          178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIF  221 (225)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~~~~~~  221 (225)
                           |......||.++.++.+|++.+.+......+..-+..|+
T Consensus       325 -----~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~LN  363 (444)
T COG1160         325 -----FAPIVFISALTGQGLDKLFEAIKEIYECATRRISTSLLN  363 (444)
T ss_pred             -----CCeEEEEEecCCCChHHHHHHHHHHHHHhccccCHHHHH
Confidence                 334445567788999999999999888887776555443

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.87  E-value=1.1e-20  Score=157.85  Aligned_cols=171  Identities=19%  Similarity=0.159  Sum_probs=113.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT  100 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (225)
                      .|+|+|.+|+|||||+|+|++..+  .....+.+|+......+.+++...++|+||||+.........+...+.+.    
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~--~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~----  234 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKP--KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKH----  234 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcc--cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHH----
Confidence            799999999999999999998875  33456788888888888874456799999999987554444445445443    


Q ss_pred             CCCccEEEEEEeCCC---C-CCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158          101 KDGIHAVLVVFSVRN---R-FSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus       101 ~~~~~~ii~v~~~~~---~-~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      ...++++++|+|+..   . .......+++.+......-..+|.++|+||+|+....  .+.+.        ++++.+..
T Consensus       235 i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~--el~~~--------l~~l~~~~  304 (390)
T PRK12298        235 LERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEE--EAEER--------AKAIVEAL  304 (390)
T ss_pred             HHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChH--HHHHH--------HHHHHHHh
Confidence            345699999999761   1 1122234445554432111247999999999976432  22222        23333332


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      +...    ...+.|+.++.++++|++.|.+++.+.
T Consensus       305 ~~~~----~Vi~ISA~tg~GIdeLl~~I~~~L~~~  335 (390)
T PRK12298        305 GWEG----PVYLISAASGLGVKELCWDLMTFIEEN  335 (390)
T ss_pred             CCCC----CEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence            2110    123445667799999999999998775

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.86  E-value=1.5e-19  Score=148.31  Aligned_cols=172  Identities=17%  Similarity=0.157  Sum_probs=114.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (225)
                      ..|+|+|.+|||||||+|+|++..+  .....+.+|..+....+.+.++..++++||||+.+.......+...+.+.+  
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~--~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhi--  234 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKP--KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHI--  234 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCC--ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHh--
Confidence            4689999999999999999998764  234466788888888887755678999999999876554444555555544  


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158          100 TKDGIHAVLVVFSVRNRFSEEEG-AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN  178 (225)
Q Consensus       100 ~~~~~~~ii~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (225)
                        .+++++++|+|+++..+.++. .+.+.+......-..+|+++|+||+|+....  .....  .     ++......+.
T Consensus       235 --e~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~--~~~~~--~-----~~~~~~~~~~  303 (335)
T PRK12299        235 --ERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEE--EEREK--R-----AALELAALGG  303 (335)
T ss_pred             --hhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCch--hHHHH--H-----HHHHHHhcCC
Confidence              456999999999743333332 3444444432111347999999999976442  11110  1     1222222232


Q ss_pred             cEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          179 RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                      .+      .+.||.++.++++|++.|.+.+.+..
T Consensus       304 ~i------~~iSAktg~GI~eL~~~L~~~l~~~~  331 (335)
T PRK12299        304 PV------FLISAVTGEGLDELLRALWELLEEAR  331 (335)
T ss_pred             CE------EEEEcCCCCCHHHHHHHHHHHHHhhh
Confidence            22      34466677999999999998887653

>PRK15494 era GTPase Era; Provisional

Probab=99.85  E-value=1.8e-20  Score=154.51  Aligned_cols=177  Identities=20%  Similarity=0.247  Sum_probs=117.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ....+|+++|.+|+|||||+|+|++.....+. ..+.+|+......+.+ ++..+.+|||||+.+...   .+...+.+.
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs-~k~~tTr~~~~~~~~~-~~~qi~~~DTpG~~~~~~---~l~~~~~r~  124 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVT-PKVQTTRSIITGIITL-KDTQVILYDTPGIFEPKG---SLEKAMVRC  124 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeecc-CCCCCccCcEEEEEEe-CCeEEEEEECCCcCCCcc---cHHHHHHHH
Confidence            34569999999999999999999998764432 3445566555555666 678899999999865422   233334444


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      ...++..+|++++|+|....+...+..++..+.+.     ..|+++|+||+|+...   ...+         +.+.+...
T Consensus       125 ~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~-----~~p~IlViNKiDl~~~---~~~~---------~~~~l~~~  187 (339)
T PRK15494        125 AWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSL-----NIVPIFLLNKIDIESK---YLND---------IKAFLTEN  187 (339)
T ss_pred             HHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc-----CCCEEEEEEhhcCccc---cHHH---------HHHHHHhc
Confidence            44456688999999998766776666666666542     2577889999997432   2221         22233222


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCCCHHH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEI  220 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~~~~~  220 (225)
                      ..    +....+.||.++.++++|++.|.+.+++. ...|.+++
T Consensus       188 ~~----~~~i~~iSAktg~gv~eL~~~L~~~l~~~-~~~~~~~~  226 (339)
T PRK15494        188 HP----DSLLFPISALSGKNIDGLLEYITSKAKIS-PWLYAEDD  226 (339)
T ss_pred             CC----CcEEEEEeccCccCHHHHHHHHHHhCCCC-CCCCCCCC
Confidence            21    11233557778899999999998887763 34455544

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.85  E-value=1e-19  Score=152.81  Aligned_cols=167  Identities=17%  Similarity=0.175  Sum_probs=112.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT  100 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (225)
                      .|+|+|.+|+|||||||+|++..+.  ....+.+|..+....+.++++..++|+||||+.+.......+...+.+.+   
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~k--Ia~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhi---  234 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPK--IANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHI---  234 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCc--cccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHH---
Confidence            8999999999999999999987752  23466788888888887744789999999999865444444555554444   


Q ss_pred             CCCccEEEEEEeCCCC---CC-HHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158          101 KDGIHAVLVVFSVRNR---FS-EEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus       101 ~~~~~~ii~v~~~~~~---~~-~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                       .+++++++|+|+.+.   -. .....+.+.|..+...-..+|++||+||+|+. ..    .+.        +.++.+..
T Consensus       235 -er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~-~~----~e~--------l~~l~~~l  300 (424)
T PRK12297        235 -ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP-EA----EEN--------LEEFKEKL  300 (424)
T ss_pred             -hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc-CC----HHH--------HHHHHHHh
Confidence             355999999999632   11 12233445555542222358999999999963 21    111        22233333


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                      +..+      .+.|+.++.++++|++.|.+++.+..
T Consensus       301 ~~~i------~~iSA~tgeGI~eL~~~L~~~l~~~~  330 (424)
T PRK12297        301 GPKV------FPISALTGQGLDELLYAVAELLEETP  330 (424)
T ss_pred             CCcE------EEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence            3222      23456677899999999999887764

>PRK00089 era GTPase Era; Reviewed

Probab=99.85  E-value=2.7e-20  Score=151.10  Aligned_cols=177  Identities=20%  Similarity=0.302  Sum_probs=115.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      ....|+|+|.+|+|||||+|+|+|........ .+.+|+......... ++..+.++||||+.+..   ....+.+....
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~-~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~---~~l~~~~~~~~   78 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSP-KPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPK---RALNRAMNKAA   78 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCC-CCCcccccEEEEEEc-CCceEEEEECCCCCCch---hHHHHHHHHHH
Confidence            34679999999999999999999988654432 333444332222232 55789999999997653   22334444444


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      ......+|++++|+|+...++..+..+++.+...     ..|+++|+||+|..... .......        ..+.+..+
T Consensus        79 ~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~-----~~pvilVlNKiDl~~~~-~~l~~~~--------~~l~~~~~  144 (292)
T PRK00089         79 WSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKV-----KTPVILVLNKIDLVKDK-EELLPLL--------EELSELMD  144 (292)
T ss_pred             HHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhc-----CCCEEEEEECCcCCCCH-HHHHHHH--------HHHHhhCC
Confidence            5566788999999999866776666666666531     37999999999986432 1222222        22222222


Q ss_pred             CcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCCCHH
Q 036158          178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDE  219 (225)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~~~~  219 (225)
                           +....+.|+..+.++++|++.+.+.+++.. ..|.++
T Consensus       145 -----~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~-~~y~~~  180 (292)
T PRK00089        145 -----FAEIVPISALKGDNVDELLDVIAKYLPEGP-PYYPED  180 (292)
T ss_pred             -----CCeEEEecCCCCCCHHHHHHHHHHhCCCCC-CCCCCC
Confidence                 222334566677999999999999887654 344433

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.84  E-value=2.6e-19  Score=152.75  Aligned_cols=184  Identities=22%  Similarity=0.266  Sum_probs=123.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ...++|+++|.+|+|||||+|+|++...... ...+++|.......+.+ ++..+.+|||||+.......+.+.......
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~-~~~~gtt~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIV-SDIAGTTRDSIDIPFER-NGKKYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeec-CCCCCceECcEeEEEEE-CCcEEEEEECCCccccccchhhHHHHHHHH
Confidence            4468999999999999999999998875433 33556777766666666 777999999999976543222111111111


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      ...+...+|++|+|+|+.++.+..+..++..+.+.     ..|+++|+||||+.+. ....+++...     +...+...
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~-----~~~iiiv~NK~Dl~~~-~~~~~~~~~~-----~~~~~~~~  316 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDLRIAGLILEA-----GKALVIVVNKWDLVKD-EKTREEFKKE-----LRRKLPFL  316 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc-----CCcEEEEEECcccCCC-HHHHHHHHHH-----HHHhcccC
Confidence            12345678999999999888888877766655442     3799999999998732 1233333333     33332221


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCCCH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTD  218 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~~~  218 (225)
                      +     +......||.++.+++++++.+.+.........-+.
T Consensus       317 ~-----~~~vi~~SA~~g~~v~~l~~~i~~~~~~~~~~i~t~  353 (429)
T TIGR03594       317 D-----FAPIVFISALTGQGVDKLLDAIDEVYENANRRISTS  353 (429)
T ss_pred             C-----CCceEEEeCCCCCCHHHHHHHHHHHHHHhcCcCCHH
Confidence            1     123345677788999999999998887765544433

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.84  E-value=6e-20  Score=128.99  Aligned_cols=116  Identities=22%  Similarity=0.339  Sum_probs=84.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT  100 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (225)
                      +|+|+|.+|+|||||+|+|++....... ..++.|.......+.+ ++..+.++||||+.+........ ..+.......
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~-~~~~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~~~~~~~~-~~~~~~~~~~   77 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVS-NIPGTTRDPVYGQFEY-NNKKFILVDTPGINDGESQDNDG-KEIRKFLEQI   77 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEES-SSTTSSSSEEEEEEEE-TTEEEEEEESSSCSSSSHHHHHH-HHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHhcccccccc-ccccceeeeeeeeeee-ceeeEEEEeCCCCcccchhhHHH-HHHHHHHHHH
Confidence            6899999999999999999987644443 3567777776666677 88889999999998654222211 2233344334


Q ss_pred             CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 036158          101 KDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTG  146 (225)
Q Consensus       101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k  146 (225)
                       ..+|++++|+++..+....+.++++.++      ..+|+++|+||
T Consensus        78 -~~~d~ii~vv~~~~~~~~~~~~~~~~l~------~~~~~i~v~NK  116 (116)
T PF01926_consen   78 -SKSDLIIYVVDASNPITEDDKNILRELK------NKKPIILVLNK  116 (116)
T ss_dssp             -CTESEEEEEEETTSHSHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred             -HHCCEEEEEEECCCCCCHHHHHHHHHHh------cCCCEEEEEcC
Confidence             6789999999987545555666777773      23899999997

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.84  E-value=4.5e-19  Score=145.34  Aligned_cols=167  Identities=19%  Similarity=0.233  Sum_probs=109.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (225)
                      ..|+|+|.+|+|||||+|+|++...  .....+.+|..+....+.+.+...+.|+||||+.+.......+...+.+.+  
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~--~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhi--  233 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKP--KIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHI--  233 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCc--cccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHH--
Confidence            5789999999999999999998764  223455678888887787734489999999999866544444555555544  


Q ss_pred             cCCCccEEEEEEeCCCC---CCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158          100 TKDGIHAVLVVFSVRNR---FSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus       100 ~~~~~~~ii~v~~~~~~---~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                        .+++++++|+|+++.   ...++ ..+.+.+..+...-..+|+++|+||+|+....  ..++.        .+++.+.
T Consensus       234 --erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~--~~~~~--------~~~l~~~  301 (329)
T TIGR02729       234 --ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEE--ELAEL--------LKELKKA  301 (329)
T ss_pred             --HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChH--HHHHH--------HHHHHHH
Confidence              355999999998732   11112 22333444332111348999999999986442  22222        2223333


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                      .+..+      .+.|+.++.++++|++.|.+.+
T Consensus       302 ~~~~v------i~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       302 LGKPV------FPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             cCCcE------EEEEccCCcCHHHHHHHHHHHh
Confidence            33332      2345667789999999997764

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.84  E-value=2.6e-19  Score=152.97  Aligned_cols=179  Identities=21%  Similarity=0.260  Sum_probs=120.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ...++|+++|.+|+|||||+|+|++...... ...+++|.......+.+ ++..+.++||||+.................
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~-~~~~gtt~~~~~~~~~~-~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~  248 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIV-SDIAGTTRDSIDTPFER-DGQKYTLIDTAGIRRKGKVTEGVEKYSVIR  248 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCceEEEEEEEEEE-CCeeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence            4579999999999999999999998875444 33566777776666666 788899999999875443222121111111


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      ...+...+|++|+|+|+..+.+..+..++..+.+.     .+|+++++||||.....  ..++...+     +...+...
T Consensus       249 ~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~-----~~~~ivv~NK~Dl~~~~--~~~~~~~~-----~~~~l~~~  316 (435)
T PRK00093        249 TLKAIERADVVLLVIDATEGITEQDLRIAGLALEA-----GRALVIVVNKWDLVDEK--TMEEFKKE-----LRRRLPFL  316 (435)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCcEEEEEECccCCCHH--HHHHHHHH-----HHHhcccc
Confidence            12344577999999999888888887777666542     37999999999987331  23333222     33222221


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCC
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQ  214 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~  214 (225)
                      .     +......||.++.+++++++.+.+...+....
T Consensus       317 ~-----~~~i~~~SA~~~~gv~~l~~~i~~~~~~~~~~  349 (435)
T PRK00093        317 D-----YAPIVFISALTGQGVDKLLEAIDEAYENANRR  349 (435)
T ss_pred             c-----CCCEEEEeCCCCCCHHHHHHHHHHHHHHHcCc
Confidence            1     22334567777899999999998887765443

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.84  E-value=7.1e-19  Score=149.70  Aligned_cols=188  Identities=15%  Similarity=0.131  Sum_probs=123.5

Q ss_pred             CCcccCCCCCCCCCCCC----------------------ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEE
Q 036158            2 GGRVIDADSKPTSPSNG----------------------ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCE   59 (225)
Q Consensus         2 ~~~~~~~~~~~~~~~~~----------------------~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~   59 (225)
                      ||++-..|..+.++.+.                      ...|+|+|.+|+|||||+|+|++..+.  ....+.+|..+.
T Consensus       120 GG~GG~Gn~~f~~~~~~~p~~~~~G~~Ge~~~~~leLk~~adV~LVG~PNAGKSTLln~Ls~akpk--IadypfTTl~P~  197 (500)
T PRK12296        120 GGRGGLGNAALASKARKAPGFALLGEPGEERDLVLELKSVADVGLVGFPSAGKSSLISALSAAKPK--IADYPFTTLVPN  197 (500)
T ss_pred             cCCCcCCCcccCCccCCCCccccCCCCCceEEEEEEecccceEEEEEcCCCCHHHHHHHHhcCCcc--ccccCcccccce
Confidence            67777777777766543                      346899999999999999999987653  245677888888


Q ss_pred             EEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCC----CCHHHH-HHHHHHHHHhc-
Q 036158           60 MQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNR----FSEEEG-AAIHILESLFG-  133 (225)
Q Consensus        60 ~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~----~~~~~~-~~~~~l~~~~~-  133 (225)
                      ...+.+ .+..++|+||||+.+.......+...+.+.+    ..+|++|+|+|+.+.    -...+. .+.+.|..+.. 
T Consensus       198 lGvv~~-~~~~f~laDtPGliegas~g~gLg~~fLrhi----eradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~  272 (500)
T PRK12296        198 LGVVQA-GDTRFTVADVPGLIPGASEGKGLGLDFLRHI----ERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPA  272 (500)
T ss_pred             EEEEEE-CCeEEEEEECCCCccccchhhHHHHHHHHHH----HhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhc
Confidence            888887 6789999999999865444444444444443    456999999998621    111122 22334443321 


Q ss_pred             --------ccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHH
Q 036158          134 --------KKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVN  205 (225)
Q Consensus       134 --------~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~  205 (225)
                              .-..+|++||+||+|+....  ...+.        +...++..+.+++      +.|+.++.++++|+..|.
T Consensus       273 l~~~~~~~~l~~kP~IVVlNKiDL~da~--el~e~--------l~~~l~~~g~~Vf------~ISA~tgeGLdEL~~~L~  336 (500)
T PRK12296        273 LDGDLGLGDLAERPRLVVLNKIDVPDAR--ELAEF--------VRPELEARGWPVF------EVSAASREGLRELSFALA  336 (500)
T ss_pred             ccccchhhhhcCCCEEEEEECccchhhH--HHHHH--------HHHHHHHcCCeEE------EEECCCCCCHHHHHHHHH
Confidence                    11247999999999975332  22111        2333333343333      335556689999999999


Q ss_pred             HHHHHcC
Q 036158          206 SVIVQNG  212 (225)
Q Consensus       206 ~~~~~~~  212 (225)
                      +++.+..
T Consensus       337 ell~~~r  343 (500)
T PRK12296        337 ELVEEAR  343 (500)
T ss_pred             HHHHhhh
Confidence            9887754

>cd01895 EngA2 EngA2 subfamily

Probab=99.83  E-value=2.6e-19  Score=133.73  Aligned_cols=172  Identities=20%  Similarity=0.281  Sum_probs=105.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      .++|+++|.+|+|||||+|+|++...... ...+++|.......+.. ++..+.+|||||+.+.................
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIV-SDIAGTTRDSIDVPFEY-DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceec-cCCCCCccCceeeEEEE-CCeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            47899999999999999999998764322 22344555554445555 67789999999998653211111110001112


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN  178 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (225)
                      .....+|++++|+|+..+.+.....++..+..   .  ..|+++++||+|+........+.+.+.     +++.+...+ 
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~---~--~~~~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~-  148 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLRIAGLILE---E--GKALVIVVNKWDLVEKDSKTMKEFKKE-----IRRKLPFLD-  148 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHHHHHHHHh---c--CCCEEEEEeccccCCccHHHHHHHHHH-----HHhhccccc-
Confidence            23457899999999986666555444444332   1  379999999999876531233333222     222221111 


Q ss_pred             cEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          179 RCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                          .......|+..+.+++++++.+.++
T Consensus       149 ----~~~~~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         149 ----YAPIVFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             ----CCceEEEeccCCCCHHHHHHHHHHh
Confidence                1223345667778999999888654

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.83  E-value=2.6e-19  Score=133.53  Aligned_cols=163  Identities=23%  Similarity=0.228  Sum_probs=100.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcH-HHHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSE-FVSKEIVKCIG   98 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~-~~~~~~~~~~~   98 (225)
                      ++|+++|.+|+|||||+|+|++.... . ...+..|..+......+ .+..+.+|||||+.+...... .+.......  
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~-~-~~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~--   75 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPE-V-APYPFTTKSLFVGHFDY-KYLRWQVIDTPGLLDRPLEERNTIEMQAITA--   75 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCc-c-CCCCCcccceeEEEEcc-CceEEEEEECCCcCCccccCCchHHHHHHHH--
Confidence            57999999999999999999987642 1 22344566666655655 667999999999865322111 111111111  


Q ss_pred             hcCCCccEEEEEEeCCCCCC---HHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           99 MTKDGIHAVLVVFSVRNRFS---EEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                       ....+|++++|+|+.++.+   .....++..++..+.   ..|+++|+||+|.....  ....         ..+....
T Consensus        76 -~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~~~--~~~~---------~~~~~~~  140 (168)
T cd01897          76 -LAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLLTFE--DLSE---------IEEEEEL  140 (168)
T ss_pred             -HHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccCchh--hHHH---------HHHhhhh
Confidence             1123589999999874432   222345555554432   37999999999986543  2221         1112211


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                      -+.      .....|+.++.+++++++.+.+++
T Consensus       141 ~~~------~~~~~Sa~~~~gi~~l~~~l~~~~  167 (168)
T cd01897         141 EGE------EVLKISTLTEEGVDEVKNKACELL  167 (168)
T ss_pred             ccC------ceEEEEecccCCHHHHHHHHHHHh
Confidence            111      123567778899999999987764

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.83  E-value=1.3e-18  Score=133.06  Aligned_cols=172  Identities=15%  Similarity=0.297  Sum_probs=107.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcH--HHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSE--FVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~~   94 (225)
                      ...++|+++|.+|+|||||+|+|++..........++.|..+....  +  +..+.||||||+........  +....+.
T Consensus        22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~--~~~l~l~DtpG~~~~~~~~~~~~~~~~~~   97 (196)
T PRK00454         22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V--NDKLRLVDLPGYGYAKVSKEEKEKWQKLI   97 (196)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c--CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence            4568899999999999999999998752222233445565554433  2  46899999999875432221  1111222


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      .........++++++|+|...+.+..+.++++++...     ..|++++.||+|.....  ..+.....     +.+.+.
T Consensus        98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~-----~~~~iiv~nK~Dl~~~~--~~~~~~~~-----i~~~l~  165 (196)
T PRK00454         98 EEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEY-----GIPVLIVLTKADKLKKG--ERKKQLKK-----VRKALK  165 (196)
T ss_pred             HHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHc-----CCcEEEEEECcccCCHH--HHHHHHHH-----HHHHHH
Confidence            2111233456889999988766666665566665432     36889999999987543  33332222     333443


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      .....++      +.|+..+.+++++++.|.+++++
T Consensus       166 ~~~~~~~------~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        166 FGDDEVI------LFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             hcCCceE------EEEcCCCCCHHHHHHHHHHHhcC
Confidence            3222222      44666778999999999888765

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.83  E-value=2.1e-19  Score=153.31  Aligned_cols=162  Identities=20%  Similarity=0.271  Sum_probs=121.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT  100 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (225)
                      +|+++|.+|+|||||+|+|++.....+ ...++.|++.....+.+ ++..+.||||||+...   ...+.+.+...+..+
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~t~d~~~~~~~~-~~~~~~liDTpG~~~~---~~~~~~~~~~~~~~~   75 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIV-SDTPGVTRDRKYGDAEW-GGREFILIDTGGIEED---DDGLDKQIREQAEIA   75 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCccee-cCCCCcccCceEEEEEE-CCeEEEEEECCCCCCc---chhHHHHHHHHHHHH
Confidence            489999999999999999998874333 34677888888888888 8889999999998643   233455566666667


Q ss_pred             CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcE
Q 036158          101 KDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC  180 (225)
Q Consensus       101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (225)
                      ...+|++++|+|+..+++..+..+.+++++.     .+|+++|+||+|..... ..            ..+ +...+.  
T Consensus        76 ~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~-----~~piilVvNK~D~~~~~-~~------------~~~-~~~lg~--  134 (429)
T TIGR03594        76 IEEADVILFVVDGREGLTPEDEEIAKWLRKS-----GKPVILVANKIDGKKED-AV------------AAE-FYSLGF--  134 (429)
T ss_pred             HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHh-----CCCEEEEEECccCCccc-cc------------HHH-HHhcCC--
Confidence            7788999999999878888888888888763     37999999999976542 11            111 112222  


Q ss_pred             EEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          181 VLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       181 ~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                         ......|+.++.++.+|++.+.+.+.+.
T Consensus       135 ---~~~~~vSa~~g~gv~~ll~~i~~~l~~~  162 (429)
T TIGR03594       135 ---GEPIPISAEHGRGIGDLLDAILELLPEE  162 (429)
T ss_pred             ---CCeEEEeCCcCCChHHHHHHHHHhcCcc
Confidence               2234556777899999999998877553

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.83  E-value=6.7e-19  Score=151.48  Aligned_cols=183  Identities=16%  Similarity=0.200  Sum_probs=120.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH-
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC-   96 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~-   96 (225)
                      ..++|+++|.+|+|||||+|+|++...... ...+++|.+.....+.+ ++..+.||||||+......... .+.+... 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~-s~~~gtT~d~~~~~~~~-~~~~~~l~DTaG~~~~~~~~~~-~e~~~~~~  286 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVV-DDVAGTTVDPVDSLIEL-GGKTWRFVDTAGLRRRVKQASG-HEYYASLR  286 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccc-cCCCCccCCcceEEEEE-CCEEEEEEECCCccccccccch-HHHHHHHH
Confidence            468999999999999999999998875333 33566777666666677 7888999999998643221110 1111111 


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      ...+...+|++++|+|+.++.+..+..++..+..     ...|+++|+||+|+....  ....+..+     +.+.+...
T Consensus       287 ~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~-----~~~piIiV~NK~Dl~~~~--~~~~~~~~-----i~~~l~~~  354 (472)
T PRK03003        287 THAAIEAAEVAVVLIDASEPISEQDQRVLSMVIE-----AGRALVLAFNKWDLVDED--RRYYLERE-----IDRELAQV  354 (472)
T ss_pred             HHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECcccCChh--HHHHHHHH-----HHHhcccC
Confidence            1224568899999999987888777666655543     237999999999986532  22222111     22222111


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCCCHHH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEI  220 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~~~~~  220 (225)
                      .  +   ......||.++.+++++++.+.+.........-+..+
T Consensus       355 ~--~---~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~i~t~~l  393 (472)
T PRK03003        355 P--W---APRVNISAKTGRAVDKLVPALETALESWDTRIPTGRL  393 (472)
T ss_pred             C--C---CCEEEEECCCCCCHHHHHHHHHHHHHHhcccCCHHHH
Confidence            1  1   1223467888899999999999999887766555444

>cd01898 Obg Obg subfamily

Probab=99.83  E-value=5.4e-19  Score=132.02  Aligned_cols=164  Identities=21%  Similarity=0.221  Sum_probs=99.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc-eEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ-VVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (225)
                      +|+++|.+|+|||||+|+|.+.... + ...++.|.......+.+ .+. .+.+|||||+.+.......+...+.+.   
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~-v-~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~---   75 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPK-I-ADYPFTTLVPNLGVVRV-DDGRSFVVADIPGLIEGASEGKGLGHRFLRH---   75 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCcc-c-cCCCccccCCcceEEEc-CCCCeEEEEecCcccCcccccCCchHHHHHH---
Confidence            5899999999999999999986641 2 22344566666556666 454 899999999864332222222222222   


Q ss_pred             cCCCccEEEEEEeCCCC-CCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc-
Q 036158          100 TKDGIHAVLVVFSVRNR-FSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC-  176 (225)
Q Consensus       100 ~~~~~~~ii~v~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  176 (225)
                       ...+|++++|+|+.+. -+... ..+++.+..........|+++|+||+|+.+..  ...+.        .....+.. 
T Consensus        76 -~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~--------~~~~~~~~~  144 (170)
T cd01898          76 -IERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEE--ELFEL--------LKELLKELW  144 (170)
T ss_pred             -HHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCch--hhHHH--------HHHHHhhCC
Confidence             2357999999999743 12222 23444444432111247899999999976543  32222        22233332 


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                      +..++      ..|+..+.+++++++.+.++
T Consensus       145 ~~~~~------~~Sa~~~~gi~~l~~~i~~~  169 (170)
T cd01898         145 GKPVF------PISALTGEGLDELLRKLAEL  169 (170)
T ss_pred             CCCEE------EEecCCCCCHHHHHHHHHhh
Confidence            22222      34556678999999988654

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01894 EngA1 EngA1 subfamily

Probab=99.83  E-value=1.3e-19  Score=133.46  Aligned_cols=156  Identities=21%  Similarity=0.256  Sum_probs=105.9

Q ss_pred             EEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCC
Q 036158           23 VLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKD  102 (225)
Q Consensus        23 ~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~  102 (225)
                      +++|.+|+|||||+|+|++...... ...+++|.........+ .+..+.+|||||+.+...   .....+.........
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~-~~~~~~t~~~~~~~~~~-~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~~   75 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIV-EDTPGVTRDRIYGEAEW-GGREFILIDTGGIEPDDE---GISKEIREQAELAIE   75 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEee-cCCCCceeCceeEEEEE-CCeEEEEEECCCCCCchh---HHHHHHHHHHHHHHH
Confidence            4789999999999999998764323 23456677777777777 778999999999986532   223333334444456


Q ss_pred             CccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEE
Q 036158          103 GIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVL  182 (225)
Q Consensus       103 ~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (225)
                      .+|++++|+++.++.+..+..+.++++..     ..|+++|+||+|.....  ..            ...+...+..   
T Consensus        76 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~-----~~piiiv~nK~D~~~~~--~~------------~~~~~~~~~~---  133 (157)
T cd01894          76 EADVILFVVDGREGLTPADEEIAKYLRKS-----KKPVILVVNKVDNIKEE--DE------------AAEFYSLGFG---  133 (157)
T ss_pred             hCCEEEEEEeccccCCccHHHHHHHHHhc-----CCCEEEEEECcccCChH--HH------------HHHHHhcCCC---
Confidence            78999999999766666666666666553     37999999999986542  11            1112222221   


Q ss_pred             eeCCCccccccHHHHHHHHHHHHHH
Q 036158          183 FDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       183 ~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                        .....|+..+.+++++++.+.+.
T Consensus       134 --~~~~~Sa~~~~gv~~l~~~l~~~  156 (157)
T cd01894         134 --EPIPISAEHGRGIGDLLDAILEL  156 (157)
T ss_pred             --CeEEEecccCCCHHHHHHHHHhh
Confidence              12334556678999999988653

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.83  E-value=2.6e-19  Score=154.03  Aligned_cols=165  Identities=20%  Similarity=0.213  Sum_probs=118.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ...++|+|+|.+|+|||||+|+|++...... ...++.|++.......+ .+..+.||||||+...   ...+...+...
T Consensus        36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v-~~~~gvT~d~~~~~~~~-~~~~~~l~DT~G~~~~---~~~~~~~~~~~  110 (472)
T PRK03003         36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVV-EDVPGVTRDRVSYDAEW-NGRRFTVVDTGGWEPD---AKGLQASVAEQ  110 (472)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCcCcccc-cCCCCCCEeeEEEEEEE-CCcEEEEEeCCCcCCc---chhHHHHHHHH
Confidence            3457899999999999999999998765333 34667788877777787 7889999999998632   12233445555


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      +..+...+|++|+|+|+.++.+..+..++.+++..     ..|+++|+||+|..... ..            ..+.. ..
T Consensus       111 ~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~-----~~piilV~NK~Dl~~~~-~~------------~~~~~-~~  171 (472)
T PRK03003        111 AEVAMRTADAVLFVVDATVGATATDEAVARVLRRS-----GKPVILAANKVDDERGE-AD------------AAALW-SL  171 (472)
T ss_pred             HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECccCCccc-hh------------hHHHH-hc
Confidence            55566788999999999877777777777777642     38999999999975321 01            11111 11


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      +..     .....||.++.++++|++.|.+.+.+
T Consensus       172 g~~-----~~~~iSA~~g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        172 GLG-----EPHPVSALHGRGVGDLLDAVLAALPE  200 (472)
T ss_pred             CCC-----CeEEEEcCCCCCcHHHHHHHHhhccc
Confidence            221     12356788889999999999887755

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.82  E-value=5.7e-19  Score=133.37  Aligned_cols=127  Identities=17%  Similarity=0.312  Sum_probs=86.6

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ....++|+++|.+|+|||||+|+|++...........+.|..+..+..   + ..+.+|||||+........+ ...+..
T Consensus        15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~---~-~~~~liDtpG~~~~~~~~~~-~~~~~~   89 (179)
T TIGR03598        15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV---N-DGFRLVDLPGYGYAKVSKEE-KEKWQK   89 (179)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe---C-CcEEEEeCCCCccccCChhH-HHHHHH
Confidence            366789999999999999999999987522222334556666654433   2 36999999998765332221 122221


Q ss_pred             HH---hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158           96 CI---GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED  152 (225)
Q Consensus        96 ~~---~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~  152 (225)
                      .+   ......+|++++|+|+..+++..+.+++..+...     ..|+++++||+|....
T Consensus        90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~-----~~pviiv~nK~D~~~~  144 (179)
T TIGR03598        90 LIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRER-----GIPVLIVLTKADKLKK  144 (179)
T ss_pred             HHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECcccCCH
Confidence            11   1223456899999999877888887776666542     3799999999998644

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.82  E-value=6.3e-20  Score=139.66  Aligned_cols=167  Identities=20%  Similarity=0.277  Sum_probs=113.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccc----------------cCCCCCceeEEEEEEEE--eeCCceEEEEeCCCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKS----------------KAGSSGVTKTCEMQRTM--LKDGQVVNVIDTPGL   79 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~----------------~~~~~~~t~~~~~~~~~--~~~~~~~~liDtPG~   79 (225)
                      +.++|+++|+.++|||||+++|++......                .....+.|.......+.  . .+..++++||||+
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~-~~~~i~~iDtPG~   80 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNE-NNRKITLIDTPGH   80 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTE-SSEEEEEEEESSS
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccc-cccceeecccccc
Confidence            468999999999999999999986542111                00123455555555665  5 7889999999997


Q ss_pred             CCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHH
Q 036158           80 FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLED  159 (225)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~  159 (225)
                      .++           ...+......+|++|+|+|+.+.......+.+..+...     ..|+++++||+|...   ..+.+
T Consensus        81 ~~f-----------~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~-----~~p~ivvlNK~D~~~---~~~~~  141 (188)
T PF00009_consen   81 EDF-----------IKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILREL-----GIPIIVVLNKMDLIE---KELEE  141 (188)
T ss_dssp             HHH-----------HHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT-----T-SEEEEEETCTSSH---HHHHH
T ss_pred             cce-----------eecccceecccccceeeeeccccccccccccccccccc-----ccceEEeeeeccchh---hhHHH
Confidence            532           22222335577999999999878888888888888764     368999999999872   25555


Q ss_pred             HhhhcCCchHH-HHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          160 YLGRECPKPLK-EILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       160 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      ...+     +. .+++..+..--.+-+..+.|+.++.++++|++.|.+.++
T Consensus       142 ~~~~-----~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  142 IIEE-----IKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             HHHH-----HHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             HHHH-----HHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            5444     44 444554332100011223466778999999999988765

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd04171 SelB SelB subfamily

Probab=99.82  E-value=3e-18  Score=127.07  Aligned_cols=162  Identities=21%  Similarity=0.237  Sum_probs=99.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccc-cCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKS-KAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      +.|+++|.+|+|||||+|+|++...... ....++.|.........++.+..+.+|||||..+           +...+.
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-----------~~~~~~   69 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-----------FIKNML   69 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH-----------HHHHHH
Confidence            3689999999999999999997542111 1123355666666666663377999999999642           222223


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN  178 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (225)
                      .....+|++++|+|+++.......+.+..+... +   .+|+++++||+|.....  .......+     +.+.++..+.
T Consensus        70 ~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~-~---~~~~ilv~NK~Dl~~~~--~~~~~~~~-----~~~~~~~~~~  138 (164)
T cd04171          70 AGAGGIDLVLLVVAADEGIMPQTREHLEILELL-G---IKRGLVVLTKADLVDED--WLELVEEE-----IRELLAGTFL  138 (164)
T ss_pred             hhhhcCCEEEEEEECCCCccHhHHHHHHHHHHh-C---CCcEEEEEECccccCHH--HHHHHHHH-----HHHHHHhcCc
Confidence            345678999999999754444444444443332 2   24899999999976431  22222222     3444433211


Q ss_pred             cEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158          179 RCVLFDNKTKDTAKRTEQVGKLLSLVNS  206 (225)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~v~~l~~~i~~  206 (225)
                      ..   ....+.|+.++.+++++++.+.+
T Consensus       139 ~~---~~~~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         139 AD---APIFPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             CC---CcEEEEeCCCCcCHHHHHHHHhh
Confidence            10   11234556677999999988754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.81  E-value=8.4e-19  Score=144.94  Aligned_cols=162  Identities=22%  Similarity=0.204  Sum_probs=106.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      ..++|+++|.+|+|||||+|+|++.... + ...+++|.+.....+.++++..+.||||||+...  ......+.+...+
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~-v-~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~--l~~~lie~f~~tl  263 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVY-A-ADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRD--LPHELVAAFRATL  263 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCcee-e-ccCCccccCCEEEEEEeCCCceEEEEecCccccc--CCHHHHHHHHHHH
Confidence            4589999999999999999999998742 2 2345667777667777766789999999998532  1223334444433


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEEGA-AIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      . ....+|++++|+|+.++....+.. +.+.+... +. ...|+++|+||+|.....  ...            ... ..
T Consensus       264 e-~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~-~~~piIlV~NK~Dl~~~~--~v~------------~~~-~~  325 (351)
T TIGR03156       264 E-EVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GA-EDIPQLLVYNKIDLLDEP--RIE------------RLE-EG  325 (351)
T ss_pred             H-HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-cc-CCCCEEEEEEeecCCChH--hHH------------HHH-hC
Confidence            2 355789999999997555444433 23344442 21 237999999999976431  111            111 10


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                      ..      .....|+.++.++++|++.|.++
T Consensus       326 ~~------~~i~iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       326 YP------EAVFVSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             CC------CEEEEEccCCCCHHHHHHHHHhh
Confidence            11      12345677789999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd04163 Era Era subfamily

Probab=99.81  E-value=8e-19  Score=130.02  Aligned_cols=164  Identities=21%  Similarity=0.255  Sum_probs=103.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      ..+|+++|.+|+|||||+|++++........ ....+.......... .+..+.+|||||+.+......   ..+.....
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~---~~~~~~~~   77 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSP-KPQTTRNRIRGIYTD-DDAQIIFVDTPGIHKPKKKLG---ERMVKAAW   77 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccC-CCCceeceEEEEEEc-CCeEEEEEECCCCCcchHHHH---HHHHHHHH
Confidence            4789999999999999999999987543322 223343333333333 557899999999886532222   12333333


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC-
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD-  177 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  177 (225)
                      .....+|++++|+++....+.....++..+...     ..|+++|+||+|+.... ....+....        +....+ 
T Consensus        78 ~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~~~~-~~~~~~~~~--------~~~~~~~  143 (168)
T cd04163          78 SALKDVDLVLFVVDASEPIGEGDEFILELLKKS-----KTPVILVLNKIDLVKDK-EDLLPLLEK--------LKELGPF  143 (168)
T ss_pred             HHHHhCCEEEEEEECCCccCchHHHHHHHHHHh-----CCCEEEEEEchhccccH-HHHHHHHHH--------HHhccCC
Confidence            456678999999999855555565666655543     37999999999976322 123332222        222211 


Q ss_pred             CcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                      .++      ...++..+.++++|++.|.++
T Consensus       144 ~~~------~~~s~~~~~~~~~l~~~l~~~  167 (168)
T cd04163         144 AEI------FPISALKGENVDELLEEIVKY  167 (168)
T ss_pred             Cce------EEEEeccCCChHHHHHHHHhh
Confidence            122      233445668899999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.81  E-value=4.2e-19  Score=147.00  Aligned_cols=167  Identities=22%  Similarity=0.274  Sum_probs=119.4

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158           14 SPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEI   93 (225)
Q Consensus        14 ~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (225)
                      ......++++++|+||+|||||+|+|++.+...+. .-+++|++.-...+.+ +|.++.|+||.|+-+....-+.+.  +
T Consensus       212 ~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVT-dI~GTTRDviee~i~i-~G~pv~l~DTAGiRet~d~VE~iG--I  287 (454)
T COG0486         212 KILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVT-DIAGTTRDVIEEDINL-NGIPVRLVDTAGIRETDDVVERIG--I  287 (454)
T ss_pred             hhhhcCceEEEECCCCCcHHHHHHHHhcCCceEec-CCCCCccceEEEEEEE-CCEEEEEEecCCcccCccHHHHHH--H
Confidence            44567899999999999999999999999987774 4788999999999999 999999999999986543223222  2


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                      .++ ......+|.++||+|+...++..+...++.+..      .+|+++|+||.|+....  ....             .
T Consensus       288 eRs-~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~------~~~~i~v~NK~DL~~~~--~~~~-------------~  345 (454)
T COG0486         288 ERA-KKAIEEADLVLFVLDASQPLDKEDLALIELLPK------KKPIIVVLNKADLVSKI--ELES-------------E  345 (454)
T ss_pred             HHH-HHHHHhCCEEEEEEeCCCCCchhhHHHHHhccc------CCCEEEEEechhccccc--ccch-------------h
Confidence            222 234457799999999986677777777772222      38999999999988764  1110             0


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                       +.....    +....|+.++.+++.|.+.|.+++...
T Consensus       346 -~~~~~~----~~i~iSa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         346 -KLANGD----AIISISAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             -hccCCC----ceEEEEecCccCHHHHHHHHHHHHhhc
Confidence             101100    123345556678888888887777655

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.81  E-value=1.7e-18  Score=129.04  Aligned_cols=161  Identities=16%  Similarity=0.148  Sum_probs=101.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK--DGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      +.|+++|.+|+|||||+|+|++......  ...+.|...........  .+..+.+|||||....           ....
T Consensus         1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~-----------~~~~   67 (168)
T cd01887           1 PVVTVMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF-----------TNMR   67 (168)
T ss_pred             CEEEEEecCCCCHHHHHHHHHhcccccc--cCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH-----------HHHH
Confidence            4699999999999999999998764322  23345555554555542  3678999999996422           1222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH---
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ---  174 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~---  174 (225)
                      ......+|++++|+|+.+.........+..+..     ...|+++|+||+|.....   .+.....     +.....   
T Consensus        68 ~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~-----~~~p~ivv~NK~Dl~~~~---~~~~~~~-----~~~~~~~~~  134 (168)
T cd01887          68 ARGASLTDIAILVVAADDGVMPQTIEAIKLAKA-----ANVPFIVALNKIDKPNAN---PERVKNE-----LSELGLQGE  134 (168)
T ss_pred             HHHHhhcCEEEEEEECCCCccHHHHHHHHHHHH-----cCCCEEEEEEceeccccc---HHHHHHH-----HHHhhcccc
Confidence            234457899999999975555555555555543     237999999999976432   1222111     111111   


Q ss_pred             -HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          175 -LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       175 -~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                       ..+..+    ...+.|+..+.++++|++.|.++..+
T Consensus       135 ~~~~~~~----~~~~~Sa~~~~gi~~l~~~l~~~~~~  167 (168)
T cd01887         135 DEWGGDV----QIVPTSAKTGEGIDDLLEAILLLAEK  167 (168)
T ss_pred             ccccCcC----cEEEeecccCCCHHHHHHHHHHhhhc
Confidence             111111    12344566778999999999877653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.81  E-value=8.1e-20  Score=141.54  Aligned_cols=183  Identities=17%  Similarity=0.180  Sum_probs=115.8

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ..++++|+++|.||+|||||||+|+......+.. ....|.........+ ++..++||||||+++....+.+....+  
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~-vg~~t~~~~~~~~~~-~~~~l~lwDtPG~gdg~~~D~~~r~~~--  111 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSK-VGVGTDITTRLRLSY-DGENLVLWDTPGLGDGKDKDAEHRQLY--  111 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeee-cccCCCchhhHHhhc-cccceEEecCCCcccchhhhHHHHHHH--
Confidence            4567899999999999999999999655433321 122233333333344 678999999999998865555444444  


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC----------cccHHHHhhhcC
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN----------DETLEDYLGREC  165 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~----------~~~~~~~~~~~~  165 (225)
                        ..+.++.|.++++++++++.-..+..++..+.-...   .+++++++|++|...+.          ...++++.++ .
T Consensus       112 --~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~---~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~-k  185 (296)
T COG3596         112 --RDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGL---DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEE-K  185 (296)
T ss_pred             --HHHhhhccEEEEeccCCCccccCCHHHHHHHHHhcc---CceeEEEEehhhhhccccccccccCCCCHHHHHHHHH-H
Confidence              445566799999999987755556666665554332   27999999999977552          1233444333 1


Q ss_pred             CchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCC
Q 036158          166 PKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQP  215 (225)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~  215 (225)
                      ...+.+.++.       ..+....+.....++++|+..+...++.+...+
T Consensus       186 ~~~~~~~~q~-------V~pV~~~~~r~~wgl~~l~~ali~~lp~e~rs~  228 (296)
T COG3596         186 AEALGRLFQE-------VKPVVAVSGRLPWGLKELVRALITALPVEARSP  228 (296)
T ss_pred             HHHHHHHHhh-------cCCeEEeccccCccHHHHHHHHHHhCcccccch
Confidence            1112222222       112222223445899999999998888665554

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.81  E-value=4e-18  Score=125.32  Aligned_cols=155  Identities=22%  Similarity=0.286  Sum_probs=102.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (225)
                      ++|+++|++|+|||||+|++++...... ...+++|.......+.+ .+..+.+|||||+.+.......   ........
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~---~~~~~~~~   76 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIV-SDIAGTTRDVIEESIDI-GGIPVRLIDTAGIRETEDEIEK---IGIERARE   76 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEec-cCCCCCccceEEEEEEe-CCEEEEEEECCCcCCCcchHHH---HHHHHHHH
Confidence            5899999999999999999998764322 23456666665556666 6778999999999866432111   11111223


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc
Q 036158          100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR  179 (225)
Q Consensus       100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (225)
                      ....+|++++|+|+..+.+..+...+..       ....|+++|+||+|.....  ..              ....+..+
T Consensus        77 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~--~~--------------~~~~~~~~  133 (157)
T cd04164          77 AIEEADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDS--EL--------------LSLLAGKP  133 (157)
T ss_pred             HHhhCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcc--cc--------------ccccCCCc
Confidence            3457899999999986666555544433       1238999999999987543  11              11122223


Q ss_pred             EEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          180 CVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       180 ~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                      +.      ..|+.++.++++|++.|.+++
T Consensus       134 ~~------~~Sa~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         134 II------AISAKTGEGLDELKEALLELA  156 (157)
T ss_pred             eE------EEECCCCCCHHHHHHHHHHhh
Confidence            33      334556689999999987764

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01850 CDC_Septin CDC/Septin

Probab=99.81  E-value=3.4e-18  Score=137.11  Aligned_cols=152  Identities=22%  Similarity=0.293  Sum_probs=103.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCC------CCCceeEEEEEE--EEeeCC--ceEEEEeCCCCCCCCCCcHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAG------SSGVTKTCEMQR--TMLKDG--QVVNVIDTPGLFDSSADSEF   88 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~------~~~~t~~~~~~~--~~~~~~--~~~~liDtPG~~~~~~~~~~   88 (225)
                      .++|+|+|.+|+|||||+|+|++.........      ....|.......  ++. ++  ..++||||||+++... +..
T Consensus         4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~-~g~~~~l~iiDTpGfgd~~~-~~~   81 (276)
T cd01850           4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEE-NGVKLKLTVIDTPGFGDNIN-NSD   81 (276)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEE-CCEEEEEEEEecCCcccccc-chh
Confidence            57999999999999999999999876543221      123333333333  333 34  3799999999998753 333


Q ss_pred             HHHHHHHHHh------------------hcCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCC
Q 036158           89 VSKEIVKCIG------------------MTKDGIHAVLVVFSVR-NRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDE  149 (225)
Q Consensus        89 ~~~~~~~~~~------------------~~~~~~~~ii~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~  149 (225)
                      .++.+..++.                  .....+|+++|+++.. .++...+.++++.+.+      ..|+++|+||+|.
T Consensus        82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~------~v~vi~VinK~D~  155 (276)
T cd01850          82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK------RVNIIPVIAKADT  155 (276)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc------cCCEEEEEECCCc
Confidence            4444433221                  1123689999999875 3677888888888765      2799999999998


Q ss_pred             CCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeC
Q 036158          150 LEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDN  185 (225)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (225)
                      +...  ....+.+.     +++.++..+.+++.|..
T Consensus       156 l~~~--e~~~~k~~-----i~~~l~~~~i~~~~~~~  184 (276)
T cd01850         156 LTPE--ELKEFKQR-----IMEDIEEHNIKIYKFPE  184 (276)
T ss_pred             CCHH--HHHHHHHH-----HHHHHHHcCCceECCCC
Confidence            7543  44444444     78888888888777654

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.80  E-value=1.6e-18  Score=148.21  Aligned_cols=158  Identities=22%  Similarity=0.247  Sum_probs=115.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (225)
                      ++|+++|.+|+|||||+|+|++.....+ ...++.|++.......+ ++..+.||||||+.+..   ......+......
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v-~~~~~~t~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~   76 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIV-ADTPGVTRDRIYGEAEW-LGREFILIDTGGIEPDD---DGFEKQIREQAEL   76 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceee-CCCCCCcccceEEEEEE-CCcEEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence            5899999999999999999998875433 33667788888888888 77999999999998622   2234445555555


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc
Q 036158          100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR  179 (225)
Q Consensus       100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (225)
                      +...+|++|+|+|+.++.+..+.++.+++++.     ..|+++|+||+|..... ..            ..+.. ..+. 
T Consensus        77 ~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~-----~~piilv~NK~D~~~~~-~~------------~~~~~-~lg~-  136 (435)
T PRK00093         77 AIEEADVILFVVDGRAGLTPADEEIAKILRKS-----NKPVILVVNKVDGPDEE-AD------------AYEFY-SLGL-  136 (435)
T ss_pred             HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCcEEEEEECccCccch-hh------------HHHHH-hcCC-
Confidence            66788999999999877888887788887764     37999999999954311 11            11111 1221 


Q ss_pred             EEEeeCCCccccccHHHHHHHHHHHHH
Q 036158          180 CVLFDNKTKDTAKRTEQVGKLLSLVNS  206 (225)
Q Consensus       180 ~~~~~~~~~~~~~~~~~v~~l~~~i~~  206 (225)
                          ......|+.++.++++|++.+.+
T Consensus       137 ----~~~~~iSa~~g~gv~~l~~~I~~  159 (435)
T PRK00093        137 ----GEPYPISAEHGRGIGDLLDAILE  159 (435)
T ss_pred             ----CCCEEEEeeCCCCHHHHHHHHHh
Confidence                12345577788999999999876

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.80  E-value=2.1e-18  Score=154.84  Aligned_cols=165  Identities=19%  Similarity=0.194  Sum_probs=119.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ...++|+++|.+|+|||||+|+|++.....+ ...+++|++......++ ++..+.+|||||+....   +.+...+...
T Consensus       273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv-~~~pGvT~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~  347 (712)
T PRK09518        273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVV-EDTPGVTRDRVSYDAEW-AGTDFKLVDTGGWEADV---EGIDSAIASQ  347 (712)
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCeeEEEEEEEEEE-CCEEEEEEeCCCcCCCC---ccHHHHHHHH
Confidence            3457899999999999999999998764333 34677888887777788 78899999999987422   2234445555


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      +..+...+|++|+|+|+...++..+..+++.++..     .+|+++|+||+|..... ..            ..+.. ..
T Consensus       348 ~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~-----~~pvIlV~NK~D~~~~~-~~------------~~~~~-~l  408 (712)
T PRK09518        348 AQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRA-----GKPVVLAVNKIDDQASE-YD------------AAEFW-KL  408 (712)
T ss_pred             HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc-----CCCEEEEEECcccccch-hh------------HHHHH-Hc
Confidence            55667788999999999877888887777777642     48999999999975321 00            01111 11


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      +..     ...+.||.++.++++|++.|.+.+.+
T Consensus       409 g~~-----~~~~iSA~~g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        409 GLG-----EPYPISAMHGRGVGDLLDEALDSLKV  437 (712)
T ss_pred             CCC-----CeEEEECCCCCCchHHHHHHHHhccc
Confidence            211     12356788899999999999887755

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.80  E-value=5.9e-18  Score=152.03  Aligned_cols=183  Identities=16%  Similarity=0.170  Sum_probs=120.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH-
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC-   96 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~-   96 (225)
                      ..++|+++|.+|+|||||+|+|++.....+ ...+++|++.....+.+ ++..+.||||||+......... .+.+... 
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v-~~~~gtT~d~~~~~~~~-~~~~~~liDTaG~~~~~~~~~~-~e~~~~~r  525 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVV-NDLAGTTRDPVDEIVEI-DGEDWLFIDTAGIKRRQHKLTG-AEYYSSLR  525 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccc-CCCCCCCcCcceeEEEE-CCCEEEEEECCCcccCcccchh-HHHHHHHH
Confidence            458999999999999999999999874323 23566777766666677 7888999999998643221110 1111111 


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      ...+...+|++++|+|+..+.+..+..++..+.+     ...|+++|+||||+....  ..+.+...     +...+...
T Consensus       526 ~~~~i~~advvilViDat~~~s~~~~~i~~~~~~-----~~~piIiV~NK~DL~~~~--~~~~~~~~-----~~~~l~~~  593 (712)
T PRK09518        526 TQAAIERSELALFLFDASQPISEQDLKVMSMAVD-----AGRALVLVFNKWDLMDEF--RRQRLERL-----WKTEFDRV  593 (712)
T ss_pred             HHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEEchhcCChh--HHHHHHHH-----HHHhccCC
Confidence            1234567899999999987888877776665543     237999999999986532  22222111     22211111


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCCCHHH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEI  220 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~~~~~  220 (225)
                      .     +......||.++.++++|++.+.+.........-+..+
T Consensus       594 ~-----~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~~i~T~~L  632 (712)
T PRK09518        594 T-----WARRVNLSAKTGWHTNRLAPAMQEALESWDQRIPTGKL  632 (712)
T ss_pred             C-----CCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCChHHH
Confidence            1     12223457888899999999999998876665544433

>PRK04213 GTP-binding protein; Provisional

Probab=99.80  E-value=5.7e-18  Score=130.15  Aligned_cols=172  Identities=20%  Similarity=0.225  Sum_probs=103.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH-
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK-   95 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~-   95 (225)
                      ...++|+++|.+|+|||||+|+|.+... .. ...+++|....  .+.+ .  .+.+|||||++....-.....+.+.. 
T Consensus         7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~-~~-~~~~~~t~~~~--~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~   79 (201)
T PRK04213          7 DRKPEIVFVGRSNVGKSTLVRELTGKKV-RV-GKRPGVTRKPN--HYDW-G--DFILTDLPGFGFMSGVPKEVQEKIKDE   79 (201)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC-cc-CCCCceeeCce--EEee-c--ceEEEeCCccccccccCHHHHHHHHHH
Confidence            4568999999999999999999998763 22 22345554433  3333 2  68999999986544322222233332 


Q ss_pred             ---HHhhcCCCccEEEEEEeCCCCCC-----------HHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHh
Q 036158           96 ---CIGMTKDGIHAVLVVFSVRNRFS-----------EEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL  161 (225)
Q Consensus        96 ---~~~~~~~~~~~ii~v~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~  161 (225)
                         ++......++++++|+|.+....           ..+.+++..+..     ...|+++|+||+|+....    ++. 
T Consensus        80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~p~iiv~NK~Dl~~~~----~~~-  149 (201)
T PRK04213         80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-----LGIPPIVAVNKMDKIKNR----DEV-  149 (201)
T ss_pred             HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-----cCCCeEEEEECccccCcH----HHH-
Confidence               33334456789999999863211           122333443332     137999999999975432    111 


Q ss_pred             hhcCCchHHHHHHHcCC--cEEEe-eCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158          162 GRECPKPLKEILQLCDN--RCVLF-DNKTKDTAKRTEQVGKLLSLVNSVIVQNGG  213 (225)
Q Consensus       162 ~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~  213 (225)
                             +.++.+..+.  .+..+ ....+.||.++ +++++++.|.+.+.+..+
T Consensus       150 -------~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~  196 (201)
T PRK04213        150 -------LDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKR  196 (201)
T ss_pred             -------HHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCccc
Confidence                   2222233332  11111 12346788889 999999999887766544

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.80  E-value=1.7e-18  Score=131.32  Aligned_cols=165  Identities=20%  Similarity=0.197  Sum_probs=106.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccccccCC--------------CCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCc
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSKAG--------------SSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS   86 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~   86 (225)
                      +|+|+|.+|+|||||+|+|++.........              ..+.|.........+ .+..+.+|||||+.+.    
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~----   75 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTPGHEDF----   75 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCCCcHHH----
Confidence            589999999999999999998765332111              123445555555566 5778999999997532    


Q ss_pred             HHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCC
Q 036158           87 EFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECP  166 (225)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~  166 (225)
                             ...+..+...+|++++|+|+.+.......+.+..+..     ...|+++++||+|.....  ........   
T Consensus        76 -------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~~i~iv~nK~D~~~~~--~~~~~~~~---  138 (189)
T cd00881          76 -------SSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE-----GGLPIIVAINKIDRVGEE--DLEEVLRE---  138 (189)
T ss_pred             -------HHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH-----CCCCeEEEEECCCCcchh--cHHHHHHH---
Confidence                   1222233447799999999986666666666655544     238999999999987632  33333333   


Q ss_pred             chHHHHHHHcCCc--------EEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          167 KPLKEILQLCDNR--------CVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       167 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                        +++.++..+..        .....+..+.|+..+.++++++.++.+.++
T Consensus       139 --~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         139 --IKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             --HHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence              44444433210        001122345566778899999999987653

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.79  E-value=9.1e-18  Score=128.67  Aligned_cols=175  Identities=19%  Similarity=0.163  Sum_probs=109.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCC---ceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSG---VTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ++|+++|.+|+|||||+|+|++...........+   +|.....  +..+....+.+|||||+.+.....+++.+.    
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~----   75 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTP--YPHPKFPNVTLWDLPGIGSTAFPPDDYLEE----   75 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCcee--eecCCCCCceEEeCCCCCcccCCHHHHHHH----
Confidence            6899999999999999999998653222221222   1222221  222224579999999998754433333221    


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcc-------cHHHHhhhcCCchH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDE-------TLEDYLGRECPKPL  169 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~-------~~~~~~~~~~~~~~  169 (225)
                        .....+|++++|.+  .+++..+..+++.+++.     .+|+++|+||+|...+.+.       ..++++++ ..+.+
T Consensus        76 --~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~-----~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~-i~~~~  145 (197)
T cd04104          76 --MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCM-----GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQE-IRDNC  145 (197)
T ss_pred             --hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHh-----CCCEEEEEecccchhhhhhccccccccHHHHHHH-HHHHH
Confidence              13457799988854  36888888888888875     2789999999998654311       12344444 33335


Q ss_pred             HHHHHHcCC---cEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCC
Q 036158          170 KEILQLCDN---RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQ  214 (225)
Q Consensus       170 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~  214 (225)
                      .+.+...+.   .++..+....    .+.++..|.+.+..-+.+..++
T Consensus       146 ~~~~~~~~~~~p~v~~vS~~~~----~~~~~~~l~~~~~~~l~~~~~~  189 (197)
T cd04104         146 LENLQEAGVSEPPVFLVSNFDP----SDYDFPKLRETLLKDLPAHKRH  189 (197)
T ss_pred             HHHHHHcCCCCCCEEEEeCCCh----hhcChHHHHHHHHHHhhHHHHH
Confidence            555554332   2333333321    3478999999998888876654

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK11058 GTPase HflX; Provisional

Probab=99.78  E-value=7.3e-18  Score=142.42  Aligned_cols=166  Identities=18%  Similarity=0.129  Sum_probs=108.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      .++|+++|.+|+|||||+|+|++.... + ...+++|.+.....+.+++...+.++||||+...  ......+.+...+ 
T Consensus       197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~-v-~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~--lp~~lve~f~~tl-  271 (426)
T PRK11058        197 VPTVSLVGYTNAGKSTLFNRITEARVY-A-ADQLFATLDPTLRRIDVADVGETVLADTVGFIRH--LPHDLVAAFKATL-  271 (426)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCcee-e-ccCCCCCcCCceEEEEeCCCCeEEEEecCccccc--CCHHHHHHHHHHH-
Confidence            478999999999999999999998754 2 2345567777666777744458999999998532  1233444454433 


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEEGAA-IHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      .....+|++|+|+|+.++........ .+++.+. +. ...|+++|+||+|+....  . . ....         . ..+
T Consensus       272 ~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el-~~-~~~pvIiV~NKiDL~~~~--~-~-~~~~---------~-~~~  335 (426)
T PRK11058        272 QETRQATLLLHVVDAADVRVQENIEAVNTVLEEI-DA-HEIPTLLVMNKIDMLDDF--E-P-RIDR---------D-EEN  335 (426)
T ss_pred             HHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHh-cc-CCCCEEEEEEcccCCCch--h-H-HHHH---------H-hcC
Confidence            34568899999999976544444332 3344443 21 247999999999986431  1 0 0000         0 112


Q ss_pred             CcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      .++     ....|+.++.++++|++.|.+.+..
T Consensus       336 ~~~-----~v~ISAktG~GIdeL~e~I~~~l~~  363 (426)
T PRK11058        336 KPI-----RVWLSAQTGAGIPLLFQALTERLSG  363 (426)
T ss_pred             CCc-----eEEEeCCCCCCHHHHHHHHHHHhhh
Confidence            111     1235777889999999999988754

>cd01878 HflX HflX subfamily

Probab=99.78  E-value=9.8e-18  Score=129.16  Aligned_cols=164  Identities=25%  Similarity=0.267  Sum_probs=101.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .+.++|+|+|++|||||||+|+|++......  .....|.......+.+++...+.+|||||+.+..  .....+.+...
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--~~~~~~~~~~~  114 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAE--DQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDL--PHQLVEAFRST  114 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccC--CccceeccceeEEEEecCCceEEEeCCCccccCC--CHHHHHHHHHH
Confidence            4568999999999999999999998764222  2234455555555666344489999999986432  12222333333


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGA-AIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      + .....+|++++|+|+.++....+.. +.+.+... +. ...|+++|+||+|..+..  ...            .....
T Consensus       115 ~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~-~~-~~~~viiV~NK~Dl~~~~--~~~------------~~~~~  177 (204)
T cd01878         115 L-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKEL-GA-EDIPMILVLNKIDLLDDE--ELE------------ERLEA  177 (204)
T ss_pred             H-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHc-Cc-CCCCEEEEEEccccCChH--HHH------------HHhhc
Confidence            2 2345789999999997554444332 33444433 21 137999999999986543  111            11111


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                      .+.+      ....|+.++.+++++++.|.+.
T Consensus       178 ~~~~------~~~~Sa~~~~gi~~l~~~L~~~  203 (204)
T cd01878         178 GRPD------AVFISAKTGEGLDELLEAIEEL  203 (204)
T ss_pred             CCCc------eEEEEcCCCCCHHHHHHHHHhh
Confidence            1112      2344556678999999888653

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.78  E-value=7.4e-18  Score=125.56  Aligned_cols=161  Identities=11%  Similarity=0.032  Sum_probs=96.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccccc--cCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKS--KAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      +|+++|++|+|||||+|+|.+......  ......+|.......+.+ ++..+.+|||||..+.           ...+.
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~-----------~~~~~   68 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQESL-----------RSLWD   68 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECCCChhh-----------HHHHH
Confidence            589999999999999999986532111  111223455555556676 6789999999997532           22233


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      .....+|++++|+|+.+..  .......++.+.+..  ....|+++++||+|.....  ..++....     +....+..
T Consensus        69 ~~~~~~~~~v~vvd~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~--~~~~~~~~-----~~~~~~~~  139 (167)
T cd04160          69 KYYAECHAIIYVIDSTDRE--RFEESKSALEKVLRNEALEGVPLLILANKQDLPDAL--SVEEIKEV-----FQDKAEEI  139 (167)
T ss_pred             HHhCCCCEEEEEEECchHH--HHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCC--CHHHHHHH-----hccccccc
Confidence            4466889999999986322  122223333333322  1247999999999975442  22222111     11111111


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVN  205 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~  205 (225)
                      +....   ...+.|+.++.++++++++|.
T Consensus       140 ~~~~~---~~~~~Sa~~g~gv~e~~~~l~  165 (167)
T cd04160         140 GRRDC---LVLPVSALEGTGVREGIEWLV  165 (167)
T ss_pred             cCCce---EEEEeeCCCCcCHHHHHHHHh
Confidence            21111   123456777899999999885

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.78  E-value=1.9e-17  Score=122.08  Aligned_cols=156  Identities=21%  Similarity=0.265  Sum_probs=99.1

Q ss_pred             EEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCC
Q 036158           24 LVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDG  103 (225)
Q Consensus        24 v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~  103 (225)
                      |+|.+|+|||||+|++.+.... . ...+++|.......+++ ++..+.+|||||+.+......  ...+....... ..
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~-~-~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~--~~~~~~~~~~~-~~   74 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQK-V-GNWPGVTVEKKEGRFKL-GGKEIEIVDLPGTYSLSPYSE--DEKVARDFLLG-EK   74 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCccc-c-cCCCCcccccceEEEee-CCeEEEEEECCCccccCCCCh--hHHHHHHHhcC-CC
Confidence            5899999999999999987632 2 23466777777777777 678999999999976543221  11222221112 58


Q ss_pred             ccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEe
Q 036158          104 IHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLF  183 (225)
Q Consensus       104 ~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (225)
                      +|++++|+|+.+. .. ....+..+.+     ...|+++|+||+|.....  .....        ..++....+.+++  
T Consensus        75 ~d~vi~v~d~~~~-~~-~~~~~~~~~~-----~~~~~iiv~NK~Dl~~~~--~~~~~--------~~~~~~~~~~~~~--  135 (158)
T cd01879          75 PDLIVNVVDATNL-ER-NLYLTLQLLE-----LGLPVVVALNMIDEAEKR--GIKID--------LDKLSELLGVPVV--  135 (158)
T ss_pred             CcEEEEEeeCCcc-hh-HHHHHHHHHH-----cCCCEEEEEehhhhcccc--cchhh--------HHHHHHhhCCCeE--
Confidence            8999999999742 22 2233333332     237999999999986543  22211        2233333343333  


Q ss_pred             eCCCccccccHHHHHHHHHHHHHHH
Q 036158          184 DNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       184 ~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                          ..|+..+.++.++++.+.++.
T Consensus       136 ----~iSa~~~~~~~~l~~~l~~~~  156 (158)
T cd01879         136 ----PTSARKGEGIDELKDAIAELA  156 (158)
T ss_pred             ----EEEccCCCCHHHHHHHHHHHh
Confidence                345556689999999987764

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.78  E-value=1.4e-17  Score=123.96  Aligned_cols=161  Identities=16%  Similarity=0.122  Sum_probs=99.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcC
Q 036158           22 LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTK  101 (225)
Q Consensus        22 i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~  101 (225)
                      |+++|.+|+|||||++++.+......    ..+|.......+.. .+..+.+|||||....           ...+..++
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~----~~pt~g~~~~~i~~-~~~~l~i~Dt~G~~~~-----------~~~~~~~~   65 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLES----VVPTTGFNSVAIPT-QDAIMELLEIGGSQNL-----------RKYWKRYL   65 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCccc----ccccCCcceEEEee-CCeEEEEEECCCCcch-----------hHHHHHHH
Confidence            78999999999999999997653211    11222222334444 6678999999997543           12223456


Q ss_pred             CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEE
Q 036158          102 DGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCV  181 (225)
Q Consensus       102 ~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (225)
                      ..+|++++|+|..++.+-  .....++.++.......|+++|.||.|.....  ...+....   ..+..+....+..+.
T Consensus        66 ~~ad~ii~V~D~t~~~s~--~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~---~~~~~~~~~~~~~~~  138 (164)
T cd04162          66 SGSQGLIFVVDSADSERL--PLARQELHQLLQHPPDLPLVVLANKQDLPAAR--SVQEIHKE---LELEPIARGRRWILQ  138 (164)
T ss_pred             hhCCEEEEEEECCCHHHH--HHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCC--CHHHHHHH---hCChhhcCCCceEEE
Confidence            678999999998743321  12223344443222358999999999975543  33332222   012333333444444


Q ss_pred             EeeCCCccccccHHHHHHHHHHHH
Q 036158          182 LFDNKTKDTAKRTEQVGKLLSLVN  205 (225)
Q Consensus       182 ~~~~~~~~~~~~~~~v~~l~~~i~  205 (225)
                      .......+|+.++.++.++++.+.
T Consensus       139 ~~Sa~~~~s~~~~~~v~~~~~~~~  162 (164)
T cd04162         139 GTSLDDDGSPSRMEAVKDLLSQLI  162 (164)
T ss_pred             EeeecCCCChhHHHHHHHHHHHHh
Confidence            445566678889999999998764

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.77  E-value=1.4e-17  Score=127.18  Aligned_cols=168  Identities=18%  Similarity=0.204  Sum_probs=106.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccc--------------cccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAF--------------KSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS   83 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~   83 (225)
                      ++++|+++|+.++|||||+++|++....              .......+.|.......+++ ++..++++||||+.+  
T Consensus         1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~--   77 (195)
T cd01884           1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHAD--   77 (195)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC-CCeEEEEEECcCHHH--
Confidence            3589999999999999999999864110              01112456677776666766 778999999999752  


Q ss_pred             CCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhh
Q 036158           84 ADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR  163 (225)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~  163 (225)
                               +...+......+|++++|+|+.......+.+.+..+.+. +   .+++++++||+|..... ...+....+
T Consensus        78 ---------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~---~~~iIvviNK~D~~~~~-~~~~~~~~~  143 (195)
T cd01884          78 ---------YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV-G---VPYIVVFLNKADMVDDE-ELLELVEME  143 (195)
T ss_pred             ---------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-C---CCcEEEEEeCCCCCCcH-HHHHHHHHH
Confidence                     222333445578999999999877777777777777653 1   13478899999986321 223333334


Q ss_pred             cCCchHHHHHHHcCC-----cEEEeeCCCcccc----ccHHHHHHHHHHHHHH
Q 036158          164 ECPKPLKEILQLCDN-----RCVLFDNKTKDTA----KRTEQVGKLLSLVNSV  207 (225)
Q Consensus       164 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~----~~~~~v~~l~~~i~~~  207 (225)
                           +++++...+.     ++++.+.....+.    .-...+..|++.|.++
T Consensus       144 -----i~~~l~~~g~~~~~v~iipiSa~~g~n~~~~~~w~~~~~~l~~~l~~~  191 (195)
T cd01884         144 -----VRELLSKYGFDGDNTPIVRGSALKALEGDDPNKWVKKILELLDALDSY  191 (195)
T ss_pred             -----HHHHHHHhcccccCCeEEEeeCccccCCCCCCcchhcHhHHHHHHHhC
Confidence                 6777766553     3444433221110    0011256788777654

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.77  E-value=1.7e-17  Score=132.21  Aligned_cols=190  Identities=21%  Similarity=0.213  Sum_probs=138.9

Q ss_pred             CCcccCCCCCCCCCCCCcee----------------------EEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEE
Q 036158            2 GGRVIDADSKPTSPSNGERN----------------------LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCE   59 (225)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~----------------------i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~   59 (225)
                      ||.+--.|..|.++.+..++                      |+++|.+|+||||||+.+...++  ....++.+|..+.
T Consensus       120 GG~GG~GN~~Fks~~nrAP~~a~~G~~Ge~r~v~LELKllADVGLVG~PNaGKSTlls~vS~AkP--KIadYpFTTL~Pn  197 (369)
T COG0536         120 GGRGGLGNAHFKSSVNRAPRFATPGEPGEERDLRLELKLLADVGLVGLPNAGKSTLLSAVSAAKP--KIADYPFTTLVPN  197 (369)
T ss_pred             CCCCCccchhhcCcccCCcccCCCCCCCceEEEEEEEeeecccccccCCCCcHHHHHHHHhhcCC--cccCCccccccCc
Confidence            77777788888877655443                      55999999999999999998886  5556888999998


Q ss_pred             EEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCC----HHH-HHHHHHHHHHhcc
Q 036158           60 MQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFS----EEE-GAAIHILESLFGK  134 (225)
Q Consensus        60 ~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~----~~~-~~~~~~l~~~~~~  134 (225)
                      ...+....+..+++-|.||+.+.+.....+..++.+.+..+    -++++|+|+. +..    .++ ..+...|.++-..
T Consensus       198 LGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt----~vL~hviD~s-~~~~~dp~~~~~~i~~EL~~Y~~~  272 (369)
T COG0536         198 LGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT----RVLLHVIDLS-PIDGRDPIEDYQTIRNELEKYSPK  272 (369)
T ss_pred             ccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh----heeEEEEecC-cccCCCHHHHHHHHHHHHHHhhHH
Confidence            88887757778999999999999888888888898888887    8999999987 222    222 3344455554222


Q ss_pred             cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          135 KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       135 ~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                      =..+|.+||+||+|...+. +.++.+        .+.+.+.+++....+     .|+.++.++++|+..+.+++.+..
T Consensus       273 L~~K~~ivv~NKiD~~~~~-e~~~~~--------~~~l~~~~~~~~~~~-----ISa~t~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         273 LAEKPRIVVLNKIDLPLDE-EELEEL--------KKALAEALGWEVFYL-----ISALTREGLDELLRALAELLEETK  336 (369)
T ss_pred             hccCceEEEEeccCCCcCH-HHHHHH--------HHHHHHhcCCCccee-----eehhcccCHHHHHHHHHHHHHHhh
Confidence            2458999999999965543 233332        233444455443332     455667899999999998888764

>cd01864 Rab19 Rab19 subfamily

Probab=99.77  E-value=2.4e-17  Score=122.66  Aligned_cols=160  Identities=13%  Similarity=0.130  Sum_probs=97.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ..++|+++|++|+|||||++++.+......  ..+..+.......+.+ ++  ..+.+|||||..           .+..
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~-----------~~~~   67 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSER--QGNTIGVDFTMKTLEI-EGKRVKLQIWDTAGQE-----------RFRT   67 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCccc--CCCccceEEEEEEEEE-CCEEEEEEEEECCChH-----------HHHH
Confidence            358999999999999999999987653222  1222223334444555 44  378999999943           2223


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      ........+|++++|+|++++.+-.. ..++..+....  ....|+++|.||+|+....+...++         ..++.+
T Consensus        68 ~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~---------~~~~~~  136 (165)
T cd01864          68 ITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYG--ASNVVLLLIGNKCDLEEQREVLFEE---------ACTLAE  136 (165)
T ss_pred             HHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEECcccccccccCHHH---------HHHHHH
Confidence            33445567899999999974432222 23444444322  2247899999999986543111111         233444


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                      ..+..     ...+.|+.++.+++++++.+.+.
T Consensus       137 ~~~~~-----~~~e~Sa~~~~~v~~~~~~l~~~  164 (165)
T cd01864         137 KNGML-----AVLETSAKESQNVEEAFLLMATE  164 (165)
T ss_pred             HcCCc-----EEEEEECCCCCCHHHHHHHHHHh
Confidence            33321     12345566778999999888653

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.77  E-value=3.8e-17  Score=124.96  Aligned_cols=166  Identities=15%  Similarity=0.204  Sum_probs=99.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCc-cccccC-------------CCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKR-AFKSKA-------------GSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA   84 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~-~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (225)
                      ..+|+++|.+|+|||||+|+|++.. .+....             ...+.|.......+.+ .+..+.+|||||..++  
T Consensus         2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~l~DtpG~~~~--   78 (194)
T cd01891           2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-KDTKINIVDTPGHADF--   78 (194)
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE-CCEEEEEEECCCcHHH--
Confidence            3589999999999999999998632 111110             1234455555555666 6789999999997643  


Q ss_pred             CcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhc
Q 036158           85 DSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRE  164 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~  164 (225)
                               ...+..+...+|++++|+|+.+........++..+..   .  ..|+++|+||+|+...   .......+ 
T Consensus        79 ---------~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~---~--~~p~iiv~NK~Dl~~~---~~~~~~~~-  140 (194)
T cd01891          79 ---------GGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE---L--GLKPIVVINKIDRPDA---RPEEVVDE-  140 (194)
T ss_pred             ---------HHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH---c--CCCEEEEEECCCCCCC---CHHHHHHH-
Confidence                     2233344567899999999975544444444433322   1  3789999999998643   22222222 


Q ss_pred             CCchHHHHHHH-------cCCcEEEeeCCC----ccccccHHHHHHHHHHHHHHHH
Q 036158          165 CPKPLKEILQL-------CDNRCVLFDNKT----KDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       165 ~~~~~~~~~~~-------~~~~~~~~~~~~----~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                          +.+.+..       .+.+++..+...    ....+...++++|++.|.+.++
T Consensus       141 ----~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~  192 (194)
T cd01891         141 ----VFDLFIELGATEEQLDFPVLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVP  192 (194)
T ss_pred             ----HHHHHHHhCCccccCccCEEEeehhccccccccccchhhHHHHHHHHHhcCC
Confidence                3333321       233333333221    1122334788888888876654

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.76  E-value=1.6e-16  Score=117.74  Aligned_cols=160  Identities=17%  Similarity=0.168  Sum_probs=97.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      ++|+++|++|+|||||++++++......  ..+..+.......+.+ ++  ..+.+|||||...           +....
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~-----------~~~~~   66 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQ--YKSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQER-----------FRSIT   66 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHH
Confidence            4799999999999999999998764222  1223333333344555 34  3788999999532           12223


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEEG-AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      ......+|++++|+|..+..+.+.. .++..+.....  ...|++++.||+|.........+.         ..+..+.+
T Consensus        67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~--~~~pivvv~nK~D~~~~~~~~~~~---------~~~~~~~~  135 (164)
T smart00175       67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREYAD--PNVVIMLVGNKSDLEDQRQVSREE---------AEAFAEEH  135 (164)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhcccccCCCHHH---------HHHHHHHc
Confidence            3345678999999999743332221 12233333221  247999999999976532112111         23344455


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      +..++.      .|+.++.+++++++.|.+.+.+
T Consensus       136 ~~~~~e------~Sa~~~~~i~~l~~~i~~~~~~  163 (164)
T smart00175      136 GLPFFE------TSAKTNTNVEEAFEELAREILK  163 (164)
T ss_pred             CCeEEE------EeCCCCCCHHHHHHHHHHHHhh
Confidence            544333      3445568999999999877654

Rab GTPases are implicated in vesicle trafficking.

>cd01861 Rab6 Rab6 subfamily

Probab=99.76  E-value=1.1e-16  Score=118.51  Aligned_cols=157  Identities=16%  Similarity=0.136  Sum_probs=96.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      .+|+++|++|+|||||+|++++......  ..+..+.+.....+.+ ++  ..+.+|||||...           +...+
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~-----------~~~~~   66 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQ--YQATIGIDFLSKTMYL-EDKTVRLQLWDTAGQER-----------FRSLI   66 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcc--CCCceeeeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHHH
Confidence            3799999999999999999998875332  2334444444445555 33  3689999999532           22233


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      ......+|++++|+|++++-+..+ ..++..+....+  ...|++++.||+|.........++         ...+....
T Consensus        67 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~D~~~~~~~~~~~---------~~~~~~~~  135 (161)
T cd01861          67 PSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERG--NDVIIVLVGNKTDLSDKRQVSTEE---------GEKKAKEL  135 (161)
T ss_pred             HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCEEEEEEEChhccccCccCHHH---------HHHHHHHh
Confidence            344567899999999974422222 223333332222  147999999999985432112211         23333444


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                      +..+..      .|+..+.+++++++.+.+.
T Consensus       136 ~~~~~~------~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861         136 NAMFIE------TSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             CCEEEE------EeCCCCCCHHHHHHHHHHh
Confidence            433332      3455668999999998754

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.76  E-value=7.8e-17  Score=136.93  Aligned_cols=124  Identities=19%  Similarity=0.178  Sum_probs=87.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .+.++|+++|++|+|||||+|+|++.....+ ...+++|++.....+.+ ++.++.+|||||+.+.....+.   .-...
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aiv-s~~pgtTrd~~~~~i~~-~g~~v~l~DTaG~~~~~~~ie~---~gi~~  275 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIV-SDIKGTTRDVVEGDFEL-NGILIKLLDTAGIREHADFVER---LGIEK  275 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcEEEEEEEEEEE-CCEEEEEeeCCCcccchhHHHH---HHHHH
Confidence            4568999999999999999999998764333 23567788877777888 7889999999998754211111   11112


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELE  151 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~  151 (225)
                      ...+...+|++++|+|+.++.+..+. ++..+..     ...|+++|+||+|+..
T Consensus       276 ~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~-----~~~piIlV~NK~Dl~~  324 (442)
T TIGR00450       276 SFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNK-----SKKPFILVLNKIDLKI  324 (442)
T ss_pred             HHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhh-----CCCCEEEEEECccCCC
Confidence            22455678999999999866655443 3333221     2379999999999753

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.76  E-value=9.4e-17  Score=119.38  Aligned_cols=161  Identities=16%  Similarity=0.132  Sum_probs=95.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      ++|+++|.+|+|||||+|++.+......  ..+..+.......+.+. ....+.+|||||...+           .....
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~~~~   67 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSK--YLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEY-----------LEVRN   67 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCccceeEEEEEEEECCeEEEEEEEECCccHHH-----------HHHHH
Confidence            4799999999999999999998774322  12222222222333331 2347899999996422           22233


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc---cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGK---KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~---~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      .....+|++|+|+|..++.+... ..++..+.+....   ....|+++|.||+|..+......++         .+....
T Consensus        68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~  138 (168)
T cd04119          68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDE---------GRLWAE  138 (168)
T ss_pred             HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHH---------HHHHHH
Confidence            45668899999999974422222 2344444443321   1347999999999976322111111         223333


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                      ..+.+++      ..|+.++.+++++++.|.+.+
T Consensus       139 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~l  166 (168)
T cd04119         139 SKGFKYF------ETSACTGEGVNEMFQTLFSSI  166 (168)
T ss_pred             HcCCeEE------EEECCCCCCHHHHHHHHHHHH
Confidence            4343332      345566789999999987543

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04121 Rab40 Rab40 subfamily

Probab=99.76  E-value=1.5e-16  Score=121.03  Aligned_cols=165  Identities=14%  Similarity=0.132  Sum_probs=104.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ..++|+++|..|+|||||++++..... .. ...+..+.......+.. ++  ..+.||||||...           +..
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~-~~-~~~~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~-----------~~~   70 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGST-ES-PYGYNMGIDYKTTTILL-DGRRVKLQLWDTSGQGR-----------FCT   70 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCC-CC-CCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHH
Confidence            458999999999999999999987543 11 11222333333344444 44  4788999999643           223


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      .+..++..+|++|+|+|.+++.+-.. ..+++.+.+..   ...|+++|.||.|+........++         .+++.+
T Consensus        71 l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~---~~~piilVGNK~DL~~~~~v~~~~---------~~~~a~  138 (189)
T cd04121          71 IFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA---PGVPKILVGNRLHLAFKRQVATEQ---------AQAYAE  138 (189)
T ss_pred             HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccchhccCCCHHH---------HHHHHH
Confidence            33445678999999999985544333 22444444432   247999999999975432111111         344444


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCC
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQ  214 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~  214 (225)
                      ..+..++      ..||..+.+++++++.+.+.+....+.
T Consensus       139 ~~~~~~~------e~SAk~g~~V~~~F~~l~~~i~~~~~~  172 (189)
T cd04121         139 RNGMTFF------EVSPLCNFNITESFTELARIVLMRHGR  172 (189)
T ss_pred             HcCCEEE------EecCCCCCCHHHHHHHHHHHHHHhcCC
Confidence            4444332      445667799999999999877665444

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.76  E-value=1.5e-17  Score=141.98  Aligned_cols=158  Identities=23%  Similarity=0.307  Sum_probs=105.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHH-HHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKE-IVK   95 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~-~~~   95 (225)
                      ...++|+++|.+|+|||||+|+|++.....+ ...+++|.+.....+.+ ++.++.+|||||+.++.   ..+... +..
T Consensus       213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v-~~~~gtT~d~~~~~i~~-~g~~i~l~DT~G~~~~~---~~ie~~gi~~  287 (449)
T PRK05291        213 REGLKVVIAGRPNVGKSSLLNALLGEERAIV-TDIAGTTRDVIEEHINL-DGIPLRLIDTAGIRETD---DEVEKIGIER  287 (449)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHhCCCCccc-CCCCCcccccEEEEEEE-CCeEEEEEeCCCCCCCc---cHHHHHHHHH
Confidence            3458999999999999999999998774333 23566777776667777 78899999999987532   111111 111


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                       .......+|++++|+|+.++.+..+...+..    .   ...|+++|+||+|+....  ...               ..
T Consensus       288 -~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~----~---~~~piiiV~NK~DL~~~~--~~~---------------~~  342 (449)
T PRK05291        288 -SREAIEEADLVLLVLDASEPLTEEDDEILEE----L---KDKPVIVVLNKADLTGEI--DLE---------------EE  342 (449)
T ss_pred             -HHHHHHhCCEEEEEecCCCCCChhHHHHHHh----c---CCCCcEEEEEhhhccccc--hhh---------------hc
Confidence             2234567899999999986665554433322    1   237999999999986432  110               01


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      .+.+      ....|+.++.++++|++.|.+.+..
T Consensus       343 ~~~~------~i~iSAktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        343 NGKP------VIRISAKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             cCCc------eEEEEeeCCCCHHHHHHHHHHHHhh
Confidence            1111      2234566678888888888887764

>cd01889 SelB_euk SelB subfamily

Probab=99.76  E-value=1.1e-17  Score=127.66  Aligned_cols=168  Identities=18%  Similarity=0.236  Sum_probs=100.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCcc---cc--ccCCCCCceeEEEEEEEEee-------------CCceEEEEeCCCCCC
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRA---FK--SKAGSSGVTKTCEMQRTMLK-------------DGQVVNVIDTPGLFD   81 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~---~~--~~~~~~~~t~~~~~~~~~~~-------------~~~~~~liDtPG~~~   81 (225)
                      ++|+++|++|+|||||+++|++...   +.  .....++.|.......+.+.             .+..+.+|||||+.+
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            4799999999999999999997311   10  11113355666665555552             156899999999741


Q ss_pred             CCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHh
Q 036158           82 SSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL  161 (225)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~  161 (225)
                             ....    .......+|++++|+|+....+..+.+.+..... .    ..|+++++||+|.....  ..+...
T Consensus        81 -------~~~~----~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~-~----~~~~iiv~NK~Dl~~~~--~~~~~~  142 (192)
T cd01889          81 -------LIRT----IIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEI-L----CKKLIVVLNKIDLIPEE--ERERKI  142 (192)
T ss_pred             -------HHHH----HHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHH-c----CCCEEEEEECcccCCHH--HHHHHH
Confidence                   1222    2233456799999999976555555444443322 1    36999999999987442  222222


Q ss_pred             hhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          162 GRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      ++ ..+.+...+...+..   .-...+.|+.++.++++|++.+.+.+.
T Consensus       143 ~~-~~~~l~~~~~~~~~~---~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         143 EK-MKKKLQKTLEKTRFK---NSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             HH-HHHHHHHHHHhcCcC---CCCEEEEeccCCCCHHHHHHHHHhccc
Confidence            22 111122223222211   012234566778999999999976554

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.76  E-value=1.9e-17  Score=124.14  Aligned_cols=162  Identities=19%  Similarity=0.189  Sum_probs=96.6

Q ss_pred             EEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCC
Q 036158           24 LVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKD-GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKD  102 (225)
Q Consensus        24 v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~  102 (225)
                      ++|++|+|||||+|+|.+...  .....+++|..+....+.+ . +..+.+|||||+.+.....+.+...+..    ...
T Consensus         1 iiG~~~~GKStll~~l~~~~~--~~~~~~~~t~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~----~~~   73 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKP--KVANYPFTTLEPNLGVVEV-PDGARIQVADIPGLIEGASEGRGLGNQFLA----HIR   73 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCc--cccCCCceeecCcceEEEc-CCCCeEEEEeccccchhhhcCCCccHHHHH----HHh
Confidence            579999999999999999875  2223455666666666666 5 8899999999986432222222222222    234


Q ss_pred             CccEEEEEEeCCCCC-----C-HHH-HHHHHHHHHHhcc-----cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHH
Q 036158          103 GIHAVLVVFSVRNRF-----S-EEE-GAAIHILESLFGK-----KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK  170 (225)
Q Consensus       103 ~~~~ii~v~~~~~~~-----~-~~~-~~~~~~l~~~~~~-----~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~  170 (225)
                      .+|++++|+|+.+..     . ..+ ......+......     ....|+++|+||+|+....  ......       ..
T Consensus        74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~~-------~~  144 (176)
T cd01881          74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAE--ELEEEL-------VR  144 (176)
T ss_pred             ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchh--HHHHHH-------HH
Confidence            579999999997442     1 222 2233333322111     1248999999999986543  222211       01


Q ss_pred             HHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          171 EILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                      ......+..      ....|+..+.+++++++.+..+
T Consensus       145 ~~~~~~~~~------~~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         145 ELALEEGAE------VVPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             HHhcCCCCC------EEEEehhhhcCHHHHHHHHHhh
Confidence            111111222      2344566778999999988653

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.76  E-value=3.9e-17  Score=122.33  Aligned_cols=164  Identities=17%  Similarity=0.120  Sum_probs=97.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      +|+++|.+|+|||||++++.+.... .. ..+..........+.. ++  ..+.+|||||...           +.....
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~-~~-~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~~~   67 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFD-KN-YKATIGVDFEMERFEI-LGVPFSLQLWDTAGQER-----------FKCIAS   67 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC-CC-CCCceeeEEEEEEEEE-CCEEEEEEEEeCCChHH-----------HHhhHH
Confidence            6899999999999999999987642 21 1222222322233444 33  4799999999642           222333


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      ..+..+|++++|+|+.++-+.  ....+++.++...  ....|+++|.||+|+.+..  .......     ..+......
T Consensus        68 ~~~~~ad~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~--~~~~~~~-----~~~~~~~~~  138 (170)
T cd04108          68 TYYRGAQAIIIVFDLTDVASL--EHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPA--QYALMEQ-----DAIKLAAEM  138 (170)
T ss_pred             HHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccc--cccccHH-----HHHHHHHHc
Confidence            456788999999999743221  1222333333221  1125689999999975432  1110001     122333333


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG  213 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~  213 (225)
                      +..+.      ..|+..+.+++++++.+.++..+-++
T Consensus       139 ~~~~~------e~Sa~~g~~v~~lf~~l~~~~~~~~~  169 (170)
T cd04108         139 QAEYW------SVSALSGENVREFFFRVAALTFELGC  169 (170)
T ss_pred             CCeEE------EEECCCCCCHHHHHHHHHHHHHHccC
Confidence            43332      34666779999999999998877653

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04149 Arf6 Arf6 subfamily

Probab=99.76  E-value=3.1e-17  Score=122.60  Aligned_cols=155  Identities=15%  Similarity=0.146  Sum_probs=95.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .+.++|+++|.+|+|||||++++........   .  +|.......+.. ....+.+|||||...           +...
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~---~--~t~g~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~   69 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT---I--PTVGFNVETVTY-KNVKFNVWDVGGQDK-----------IRPL   69 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCccc---c--CCcccceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence            3468999999999999999999986543211   1  222233334444 667899999999642           2223


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      +..++..+|++|+|+|+.+..+  ..+..+++.+.+...  ...|+++|.||+|.....  ..++.         ++.++
T Consensus        70 ~~~~~~~a~~ii~v~D~t~~~s--~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i---------~~~~~  136 (168)
T cd04149          70 WRHYYTGTQGLIFVVDSADRDR--IDEARQELHRIINDREMRDALLLVFANKQDLPDAM--KPHEI---------QEKLG  136 (168)
T ss_pred             HHHHhccCCEEEEEEeCCchhh--HHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC--CHHHH---------HHHcC
Confidence            3445678899999999974322  222334444443321  237999999999975431  22221         11111


Q ss_pred             H---cCCcEEEeeCCCccccccHHHHHHHHHHHH
Q 036158          175 L---CDNRCVLFDNKTKDTAKRTEQVGKLLSLVN  205 (225)
Q Consensus       175 ~---~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~  205 (225)
                      .   -+..++.+    +.||+++.++++++++|.
T Consensus       137 ~~~~~~~~~~~~----~~SAk~g~gv~~~~~~l~  166 (168)
T cd04149         137 LTRIRDRNWYVQ----PSCATSGDGLYEGLTWLS  166 (168)
T ss_pred             CCccCCCcEEEE----EeeCCCCCChHHHHHHHh
Confidence            0   11122222    457788899999999885

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04158 ARD1 ARD1 subfamily

Probab=99.76  E-value=2.6e-17  Score=123.13  Aligned_cols=160  Identities=15%  Similarity=0.120  Sum_probs=97.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT  100 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (225)
                      +|+++|.+|+|||||++++.+....     ...+|.......+.. .+..+.+|||||....           ...+..+
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~-----~~~~T~~~~~~~~~~-~~~~i~l~Dt~G~~~~-----------~~~~~~~   63 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFM-----QPIPTIGFNVETVEY-KNLKFTIWDVGGKHKL-----------RPLWKHY   63 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCC-----CcCCcCceeEEEEEE-CCEEEEEEECCCChhc-----------chHHHHH
Confidence            5899999999999999999986421     123344444445555 6778999999997533           1222334


Q ss_pred             CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH-cC
Q 036158          101 KDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL-CD  177 (225)
Q Consensus       101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  177 (225)
                      ...+|++++|+|.+++.+-  .+...++.+.+...  ...|+++|.||.|+....  ..++..+.     + .+... ++
T Consensus        64 ~~~ad~ii~V~D~s~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~-----~-~~~~~~~~  133 (169)
T cd04158          64 YLNTQAVVFVVDSSHRDRV--SEAHSELAKLLTEKELRDALLLIFANKQDVAGAL--SVEEMTEL-----L-SLHKLCCG  133 (169)
T ss_pred             hccCCEEEEEEeCCcHHHH--HHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCC--CHHHHHHH-----h-CCccccCC
Confidence            5678999999999743211  12333444443221  236999999999975332  22222111     0 01111 11


Q ss_pred             CcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ..+..+    ..||+++.++++++++|.+.+.++
T Consensus       134 ~~~~~~----~~Sa~~g~gv~~~f~~l~~~~~~~  163 (169)
T cd04158         134 RSWYIQ----GCDARSGMGLYEGLDWLSRQLVAA  163 (169)
T ss_pred             CcEEEE----eCcCCCCCCHHHHHHHHHHHHhhc
Confidence            122222    457788899999999998766554

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.76  E-value=1.5e-17  Score=127.99  Aligned_cols=166  Identities=14%  Similarity=0.130  Sum_probs=101.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCc-cccccCCCCCceeEEEEEEEEee--------------------------------
Q 036158           20 RNLVLVGRTGNGKSATANSILGKR-AFKSKAGSSGVTKTCEMQRTMLK--------------------------------   66 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~-~~~~~~~~~~~t~~~~~~~~~~~--------------------------------   66 (225)
                      .+|+++|+.|+|||||+.+|.+.. .........+.|..+....+.+.                                
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            479999999999999999998763 22222223344444444443331                                


Q ss_pred             CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-CCHHHHHHHHHHHHHhcccccccEEEEEe
Q 036158           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNR-FSEEEGAAIHILESLFGKKISDYMIVVFT  145 (225)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~vv~~  145 (225)
                      ....+.||||||..           .+...+......+|++++|+|+.++ ......+.+..+.. .+   .+|+++|+|
T Consensus        81 ~~~~i~~iDtPG~~-----------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~---~~~iiivvN  145 (203)
T cd01888          81 LVRHVSFVDCPGHE-----------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MG---LKHIIIVQN  145 (203)
T ss_pred             cccEEEEEECCChH-----------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cC---CCcEEEEEE
Confidence            12689999999953           2333333445578999999999753 33344445544433 11   257899999


Q ss_pred             cCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          146 GGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       146 k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      |+|+....  ......++     +++.+......   .....+.|+.++.++++|++.|.+.+++
T Consensus       146 K~Dl~~~~--~~~~~~~~-----i~~~~~~~~~~---~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         146 KIDLVKEE--QALENYEQ-----IKKFVKGTIAE---NAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             chhccCHH--HHHHHHHH-----HHHHHhccccC---CCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence            99986432  33333333     34444322111   0112345667789999999999876654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd01865 Rab3 Rab3 subfamily

Probab=99.76  E-value=1.5e-16  Score=118.39  Aligned_cols=159  Identities=13%  Similarity=0.097  Sum_probs=96.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      ++|+++|.+|+|||||+|++.+......  ..+..+.......+.. ++  ..+.+|||||...           +....
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~g~~~-----------~~~~~   67 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSA--FVSTVGIDFKVKTVFR-NDKRVKLQIWDTAGQER-----------YRTIT   67 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHH
Confidence            6899999999999999999998764222  1122222222223333 33  4789999999542           22233


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc-ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK-ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      ......+|++++|+|..++-+  ...+.+++.++.... ...|+++|.||+|+.+......++         ..++.+..
T Consensus        68 ~~~~~~~~~~l~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~---------~~~~~~~~  136 (165)
T cd01865          68 TAYYRGAMGFILMYDITNEES--FNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSER---------GRQLADQL  136 (165)
T ss_pred             HHHccCCcEEEEEEECCCHHH--HHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHH---------HHHHHHHc
Confidence            455678999999999874322  222333444432211 247899999999986543111111         23334443


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      +..++      ..|+.++.++++|++.+.+.+.
T Consensus       137 ~~~~~------~~Sa~~~~gv~~l~~~l~~~~~  163 (165)
T cd01865         137 GFEFF------EASAKENINVKQVFERLVDIIC  163 (165)
T ss_pred             CCEEE------EEECCCCCCHHHHHHHHHHHHH
Confidence            43322      3456677899999999977654

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04142 RRP22 RRP22 subfamily

Probab=99.76  E-value=1.5e-16  Score=121.95  Aligned_cols=174  Identities=13%  Similarity=0.068  Sum_probs=102.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      .+|+|+|.+|+|||||++++++......  ..+..+.......+.+ ++  ..+.+|||||.........   .++....
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~--~~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~~~---~e~~~~~   74 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEE--YIPTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGTAG---QEWMDPR   74 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcc--cCCccccccceeEEEE-CCEEEEEEEEeCCCcccCCccch---hHHHHHH
Confidence            4799999999999999999998664221  1222222332233444 45  3688999999875432211   1122222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhc-ccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH-
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFG-KKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ-  174 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~-  174 (225)
                      ......+|++|+|+|+.++.+-+. ..+++.+.+... .....|+++|.||+|........ .+        ..+++.. 
T Consensus        75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~-~~--------~~~~~~~~  145 (198)
T cd04142          75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAP-RH--------VLSVLVRK  145 (198)
T ss_pred             HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccccccc-HH--------HHHHHHHH
Confidence            234568899999999974433222 223334443321 12347999999999986532111 11        0222221 


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCC
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQ  214 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~  214 (225)
                      ..+..+      ...|+.++.++++|++.+.+..-.+++.
T Consensus       146 ~~~~~~------~e~Sak~g~~v~~lf~~i~~~~~~~~~~  179 (198)
T cd04142         146 SWKCGY------LECSAKYNWHILLLFKELLISATTRGRS  179 (198)
T ss_pred             hcCCcE------EEecCCCCCCHHHHHHHHHHHhhccCCC
Confidence            112221      2456667799999999998877777655

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.76  E-value=1.3e-16  Score=119.02  Aligned_cols=160  Identities=18%  Similarity=0.106  Sum_probs=96.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .++|+++|.+|+|||||++++.+......  ..+..+.......+.+ ++  ..+.+|||||....           ...
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~--~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~g~~~~-----------~~~   68 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPS--FISTIGIDFKIRTIEL-DGKKIKLQIWDTAGQERF-----------RTI   68 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcCCcc--cccCccceEEEEEEEE-CCEEEEEEEEeCCchHHH-----------HHH
Confidence            47999999999999999999998764222  1222222233333444 33  37899999995422           222


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      .......+|++++|+|++++.+-.+ ..++..+....  ....|+++|.||+|+........++         ..+..+.
T Consensus        69 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~---------~~~~~~~  137 (167)
T cd01867          69 TTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHA--SEDVERMLVGNKCDMEEKRVVSKEE---------GEALADE  137 (167)
T ss_pred             HHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEECcccccccCCCHHH---------HHHHHHH
Confidence            2344567899999999974432222 12233333321  1247999999999987542112111         2334444


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      .+..+      ...|+.++.+++++++.+.+.+.
T Consensus       138 ~~~~~------~~~Sa~~~~~v~~~~~~i~~~~~  165 (167)
T cd01867         138 YGIKF------LETSAKANINVEEAFFTLAKDIK  165 (167)
T ss_pred             cCCEE------EEEeCCCCCCHHHHHHHHHHHHH
Confidence            44433      24455666899999999887664

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04124 RabL2 RabL2 subfamily

Probab=99.76  E-value=5.6e-17  Score=120.35  Aligned_cols=157  Identities=17%  Similarity=0.075  Sum_probs=94.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      ++|+++|.+|+|||||++++++.......  .+............+. ....+.+|||||...+           ...+.
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~~~   67 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQ--LSTYALTLYKHNAKFEGKTILVDFWDTAGQERF-----------QTMHA   67 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCc--CCceeeEEEEEEEEECCEEEEEEEEeCCCchhh-----------hhhhH
Confidence            47999999999999999999876532211  1111111222223331 2236889999996532           23334


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      .++..+|++|+|+|.+++.+..+ ..++..+++..   ...|+++|.||+|+...   ..+    +     ..++.+..+
T Consensus        68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~p~ivv~nK~Dl~~~---~~~----~-----~~~~~~~~~  132 (161)
T cd04124          68 SYYHKAHACILVFDVTRKITYKNLSKWYEELREYR---PEIPCIVVANKIDLDPS---VTQ----K-----KFNFAEKHN  132 (161)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEECccCchh---HHH----H-----HHHHHHHcC
Confidence            45678899999999975433222 23444444422   23799999999997321   111    1     122222223


Q ss_pred             CcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      .+++      ..|+.++.+++++++.+.+.+.+
T Consensus       133 ~~~~------~~Sa~~~~gv~~l~~~l~~~~~~  159 (161)
T cd04124         133 LPLY------YVSAADGTNVVKLFQDAIKLAVS  159 (161)
T ss_pred             CeEE------EEeCCCCCCHHHHHHHHHHHHHh
Confidence            2222      34666779999999999876654

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.76  E-value=1.7e-16  Score=117.80  Aligned_cols=163  Identities=19%  Similarity=0.292  Sum_probs=99.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCc---HHHHHHHHHHHh
Q 036158           22 LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS---EFVSKEIVKCIG   98 (225)
Q Consensus        22 i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~---~~~~~~~~~~~~   98 (225)
                      |+++|.+|+|||||+|+|++...........+.|.....  ...  ...+.++||||+.....+.   ++....+..++ 
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~-   76 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNV--NDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYL-   76 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEc--cCeEEEecCCCccccccCHHHHHHHHHHHHHHH-
Confidence            899999999999999999954433333333444444333  222  3389999999998654321   11222222222 


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH-HcC
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ-LCD  177 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  177 (225)
                      .....++.+++++|.+...+....++++++...     ..|+++++||+|.....  ........     ....++ ...
T Consensus        77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-----~~~vi~v~nK~D~~~~~--~~~~~~~~-----~~~~l~~~~~  144 (170)
T cd01876          77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-----GIPFLVVLTKADKLKKS--ELAKALKE-----IKKELKLFEI  144 (170)
T ss_pred             HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-----CCCEEEEEEchhcCChH--HHHHHHHH-----HHHHHHhccC
Confidence            233567899999998755556666667776653     26899999999986543  33333222     333333 122


Q ss_pred             -CcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          178 -NRCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       178 -~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                       .+++      +.|+..+.++.++++.|.++
T Consensus       145 ~~~~~------~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         145 DPPII------LFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             CCceE------EEecCCCCCHHHHHHHHHHh
Confidence             2333      33445557889999988764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04109 Rab28 Rab28 subfamily

Probab=99.76  E-value=1.5e-16  Score=123.58  Aligned_cols=164  Identities=16%  Similarity=0.127  Sum_probs=100.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKD--GQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      ++|+++|.+|+|||||+|++.+.... . ...+..+.+.....+.+++  ...+.||||||...+           ...+
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~-~-~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~-----------~~l~   67 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFG-K-SYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIG-----------GKML   67 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCC-C-CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHH-----------HHHH
Confidence            47999999999999999999976532 1 1122333333334455533  347899999995321           2223


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGK-KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      ..++..+|++|+|+|++++-+... ..++..+.+.... ....|+++|.||+|+........+         ...++...
T Consensus        68 ~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~---------~~~~~~~~  138 (215)
T cd04109          68 DKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDD---------KHARFAQA  138 (215)
T ss_pred             HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHH---------HHHHHHHH
Confidence            334668899999999975433222 2244455554332 123578999999998643211111         13344444


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      .+..++      ..||.++.+++++++.+.+.+...
T Consensus       139 ~~~~~~------~iSAktg~gv~~lf~~l~~~l~~~  168 (215)
T cd04109         139 NGMESC------LVSAKTGDRVNLLFQQLAAELLGV  168 (215)
T ss_pred             cCCEEE------EEECCCCCCHHHHHHHHHHHHHhc
Confidence            443332      346677899999999998877654

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd01866 Rab2 Rab2 subfamily

Probab=99.76  E-value=1.7e-16  Score=118.56  Aligned_cols=161  Identities=14%  Similarity=0.095  Sum_probs=95.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKD-GQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      .++|+++|.+|+|||||+|++++........  +..+.+.....+.... ...+.+|||||..           .+....
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-----------~~~~~~   70 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMITIDGKQIKLQIWDTAGQE-----------SFRSIT   70 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CccceeEEEEEEEECCEEEEEEEEECCCcH-----------HHHHHH
Confidence            4799999999999999999999876432222  1222222223333312 2378999999943           222333


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc-cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK-KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      ......+|++++|+|+.++.+-  .....++.+.... ....|+++|.||+|.........++         .+.+....
T Consensus        71 ~~~~~~~d~il~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~---------~~~~~~~~  139 (168)
T cd01866          71 RSYYRGAAGALLVYDITRRETF--NHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEE---------GEAFAKEH  139 (168)
T ss_pred             HHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHH---------HHHHHHHc
Confidence            3455688999999998743222  2233333332211 1247899999999976432112221         23334444


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      +..+      ...|+..+.++++++..+.+.+.
T Consensus       140 ~~~~------~e~Sa~~~~~i~~~~~~~~~~~~  166 (168)
T cd01866         140 GLIF------METSAKTASNVEEAFINTAKEIY  166 (168)
T ss_pred             CCEE------EEEeCCCCCCHHHHHHHHHHHHH
Confidence            4333      23455566899999988876654

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.75  E-value=1.5e-16  Score=118.48  Aligned_cols=159  Identities=17%  Similarity=0.163  Sum_probs=95.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      ++|+++|.+|+|||||++++.+......  ..+..+.......+.. ++  ..+.+|||||....           ....
T Consensus         3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~-----------~~~~   68 (166)
T cd01869           3 FKLLLIGDSGVGKSCLLLRFADDTYTES--YISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERF-----------RTIT   68 (166)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEEEE-CCEEEEEEEEECCCcHhH-----------HHHH
Confidence            6899999999999999999997664221  1222233333334444 33  36899999995422           2222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      ......+|++|+|+|+.++-+... ..+++.+....  ....|+++|.||+|.........++         .....+..
T Consensus        69 ~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~--~~~~~~iiv~nK~Dl~~~~~~~~~~---------~~~~~~~~  137 (166)
T cd01869          69 SSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYA--SENVNKLLVGNKCDLTDKRVVDYSE---------AQEFADEL  137 (166)
T ss_pred             HHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEEChhcccccCCCHHH---------HHHHHHHc
Confidence            334567899999999974322111 12333333322  1237999999999976543111111         23333444


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      +.+++      +.|+.++.+++++++.|.+.+.
T Consensus       138 ~~~~~------~~Sa~~~~~v~~~~~~i~~~~~  164 (166)
T cd01869         138 GIPFL------ETSAKNATNVEQAFMTMAREIK  164 (166)
T ss_pred             CCeEE------EEECCCCcCHHHHHHHHHHHHH
Confidence            44333      3455566899999999987654

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.75  E-value=6.4e-17  Score=121.72  Aligned_cols=161  Identities=14%  Similarity=0.107  Sum_probs=97.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .+.++|+++|..|+|||||++++.......     ..+|.......... .+..+.+|||||...           +...
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~-----~~~t~~~~~~~~~~-~~~~l~l~D~~G~~~-----------~~~~   73 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESVT-----TIPTIGFNVETVTY-KNISFTVWDVGGQDK-----------IRPL   73 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCC-----cCCccccceEEEEE-CCEEEEEEECCCChh-----------hHHH
Confidence            446899999999999999999996444211     12233343444555 677899999999643           2233


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      +..++..+|++|+|+|+.++.+  ..+..+++.+.+...  ...|+++|.||.|+....  ..++....     + . +.
T Consensus        74 ~~~~~~~ad~ii~v~D~t~~~s--~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~-----~-~-~~  142 (175)
T smart00177       74 WRHYYTNTQGLIFVVDSNDRDR--IDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEK-----L-G-LH  142 (175)
T ss_pred             HHHHhCCCCEEEEEEECCCHHH--HHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHH-----h-C-cc
Confidence            3445678899999999974321  122333444433221  236999999999975432  22222111     0 0 00


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                      ....+...   ..+.||.++.++++++++|.+.+
T Consensus       143 ~~~~~~~~---~~~~Sa~~g~gv~e~~~~l~~~~  173 (175)
T smart00177      143 SIRDRNWY---IQPTCATSGDGLYEGLTWLSNNL  173 (175)
T ss_pred             ccCCCcEE---EEEeeCCCCCCHHHHHHHHHHHh
Confidence            11111111   12356778899999999997654

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04140 ARHI_like ARHI subfamily

Probab=99.75  E-value=7.2e-17  Score=120.19  Aligned_cols=160  Identities=16%  Similarity=0.128  Sum_probs=95.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (225)
                      .+|+++|.+|+|||||++++++...... ..+.............. ....+.+|||||...+.           .....
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~-~~~t~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~~-----------~~~~~   68 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRES-YIPTIEDTYRQVISCSK-NICTLQITDTTGSHQFP-----------AMQRL   68 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCC-cCCcchheEEEEEEECC-EEEEEEEEECCCCCcch-----------HHHHH
Confidence            6899999999999999999997764222 11111111111112222 23468899999976442           11123


Q ss_pred             cCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhccc-ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158          100 TKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKK-ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus       100 ~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~-~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      +...+|++++|+|.+++.+... ..+++.+.+..+.. ...|+++|.||+|+.+..+...++         ........+
T Consensus        69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~---------~~~~~~~~~  139 (165)
T cd04140          69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNE---------GAACATEWN  139 (165)
T ss_pred             HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHH---------HHHHHHHhC
Confidence            4457799999999975443332 34555566554322 347999999999986533111111         122222223


Q ss_pred             CcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                      ..+      ...||.++.+++++++.|.++
T Consensus       140 ~~~------~e~SA~~g~~v~~~f~~l~~~  163 (165)
T cd04140         140 CAF------METSAKTNHNVQELFQELLNL  163 (165)
T ss_pred             CcE------EEeecCCCCCHHHHHHHHHhc
Confidence            222      345667779999999998765

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.75  E-value=2e-17  Score=132.62  Aligned_cols=154  Identities=23%  Similarity=0.313  Sum_probs=95.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCC------CCCceeEEEEEEEEee-CC--ceEEEEeCCCCCCCCCCcHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAG------SSGVTKTCEMQRTMLK-DG--QVVNVIDTPGLFDSSADSEFV   89 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~-~~--~~~~liDtPG~~~~~~~~~~~   89 (225)
                      .++|+|+|.+|+|||||||+|++.........      ....+.........+. ++  .+++|+||||+++.. ++...
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i-~n~~~   82 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNI-DNSDC   82 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSS-THCHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccc-cchhh
Confidence            47999999999999999999999876544210      1112333333333332 22  289999999999764 33334


Q ss_pred             HHHHHHHHh-----------------hcCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158           90 SKEIVKCIG-----------------MTKDGIHAVLVVFSVR-NRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELE  151 (225)
Q Consensus        90 ~~~~~~~~~-----------------~~~~~~~~ii~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~  151 (225)
                      +..+..++.                 ....++|++||+++.. +++.+.|.+.|+.|.+.      .+++.|+.|+|.+.
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~------vNvIPvIaKaD~lt  156 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR------VNVIPVIAKADTLT  156 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT------SEEEEEESTGGGS-
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc------ccEEeEEecccccC
Confidence            444444442                 1235789999999874 57899999999888775      79999999999886


Q ss_pred             CCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCC
Q 036158          152 DNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK  186 (225)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (225)
                      ..  .+..+.+.     +.+.++..+.+++.|...
T Consensus       157 ~~--el~~~k~~-----i~~~l~~~~I~~f~f~~~  184 (281)
T PF00735_consen  157 PE--ELQAFKQR-----IREDLEENNIKIFDFPED  184 (281)
T ss_dssp             HH--HHHHHHHH-----HHHHHHHTT--S------
T ss_pred             HH--HHHHHHHH-----HHHHHHHcCceeeccccc
Confidence            53  67776666     888888889887776544

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.75  E-value=2.3e-16  Score=118.37  Aligned_cols=164  Identities=15%  Similarity=0.152  Sum_probs=100.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .++|+++|..|+|||||++++.+......   ...+........+.+ ++  ..+.||||||...+           ...
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~---~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~l   66 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDY---HDPTIEDAYKQQARI-DNEPALLDILDTAGQAEF-----------TAM   66 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCC---cCCcccceEEEEEEE-CCEEEEEEEEeCCCchhh-----------HHH
Confidence            36899999999999999999987654211   111111222223444 44  36889999996532           223


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGA-AIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      ...++..+|++|+|+|.+++.+-.... +++.+.+.. .....|+++|.||+|......-..++         ..++.+.
T Consensus        67 ~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~-~~~~~piilvgNK~Dl~~~~~v~~~~---------~~~~a~~  136 (172)
T cd04141          67 RDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVR-LTEDIPLVLVGNKVDLESQRQVTTEE---------GRNLARE  136 (172)
T ss_pred             hHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhhhhcCccCHHH---------HHHHHHH
Confidence            334566789999999998665544432 334444432 22347999999999975432111111         2233333


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG  213 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~  213 (225)
                      .+.+++      .+||..+.+++++++.+.+.+.+...
T Consensus       137 ~~~~~~------e~Sa~~~~~v~~~f~~l~~~~~~~~~  168 (172)
T cd04141         137 FNCPFF------ETSAALRHYIDDAFHGLVREIRRKES  168 (172)
T ss_pred             hCCEEE------EEecCCCCCHHHHHHHHHHHHHHhcc
Confidence            343322      44556678999999999877665443

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04122 Rab14 Rab14 subfamily

Probab=99.75  E-value=2.4e-16  Score=117.44  Aligned_cols=158  Identities=16%  Similarity=0.149  Sum_probs=93.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      ++|+++|.+|+|||||++++.+......  ..+..........+.. ++  ..+.+|||||...           +....
T Consensus         3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~~   68 (166)
T cd04122           3 FKYIIIGDMGVGKSCLLHQFTEKKFMAD--CPHTIGVEFGTRIIEV-NGQKIKLQIWDTAGQER-----------FRAVT   68 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCC--CCcccceeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHHH
Confidence            6899999999999999999997753221  1111112222223344 33  3689999999532           22333


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc-cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK-KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      ...+..+|++|+|+|+.++.+-.  .+..++...... ....|+++|.||+|+........++         ..++....
T Consensus        69 ~~~~~~~~~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~---------~~~~~~~~  137 (166)
T cd04122          69 RSYYRGAAGALMVYDITRRSTYN--HLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEE---------AKQFADEN  137 (166)
T ss_pred             HHHhcCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHH---------HHHHHHHc
Confidence            44567889999999997442222  222333332111 1236899999999976543111111         23344443


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                      +..++      ..|+.++.++++++..+.+.+
T Consensus       138 ~~~~~------e~Sa~~~~~i~e~f~~l~~~~  163 (166)
T cd04122         138 GLLFL------ECSAKTGENVEDAFLETAKKI  163 (166)
T ss_pred             CCEEE------EEECCCCCCHHHHHHHHHHHH
Confidence            43322      345566789999988776554

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04154 Arl2 Arl2 subfamily

Probab=99.75  E-value=8.6e-17  Score=120.70  Aligned_cols=158  Identities=15%  Similarity=0.161  Sum_probs=97.0

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158           14 SPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEI   93 (225)
Q Consensus        14 ~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (225)
                      .+....++|+++|++|+|||||+++|.+.....     ...|.......+.+ ++..+.+|||||...           +
T Consensus         9 ~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~-----~~~t~g~~~~~~~~-~~~~l~l~D~~G~~~-----------~   71 (173)
T cd04154           9 KLKEREMRILILGLDNAGKTTILKKLLGEDIDT-----ISPTLGFQIKTLEY-EGYKLNIWDVGGQKT-----------L   71 (173)
T ss_pred             hcCCCccEEEEECCCCCCHHHHHHHHccCCCCC-----cCCccccceEEEEE-CCEEEEEEECCCCHH-----------H
Confidence            344566899999999999999999999874321     12232333444555 577899999999642           2


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE  171 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~  171 (225)
                      ...+..+...+|++++|+|+.++.+..  ....++...+..  ....|+++|.||+|..+..  ..++         +.+
T Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~---------~~~  138 (173)
T cd04154          72 RPYWRNYFESTDALIWVVDSSDRLRLD--DCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEE---------IRE  138 (173)
T ss_pred             HHHHHHHhCCCCEEEEEEECCCHHHHH--HHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHH---------HHH
Confidence            223334566889999999997442211  122233333221  1347999999999976542  2222         122


Q ss_pred             HHHHc--C-CcEEEeeCCCccccccHHHHHHHHHHHH
Q 036158          172 ILQLC--D-NRCVLFDNKTKDTAKRTEQVGKLLSLVN  205 (225)
Q Consensus       172 ~~~~~--~-~~~~~~~~~~~~~~~~~~~v~~l~~~i~  205 (225)
                      .+...  . ..+.    ....||.++.+++++++++.
T Consensus       139 ~~~~~~~~~~~~~----~~~~Sa~~g~gi~~l~~~l~  171 (173)
T cd04154         139 ALELDKISSHHWR----IQPCSAVTGEGLLQGIDWLV  171 (173)
T ss_pred             HhCccccCCCceE----EEeccCCCCcCHHHHHHHHh
Confidence            22111  1 1122    23456778899999998874

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.75  E-value=4.5e-17  Score=123.40  Aligned_cols=164  Identities=13%  Similarity=0.093  Sum_probs=95.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK--DGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .++|+++|.+|+|||||++++.+......   .+..+.......+...  .+..+.+|||||...           +...
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-----------~~~~   68 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT---VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEK-----------LRPL   68 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc---CCccccceeEEEeeccCCCceEEEEEECCCcHh-----------HHHH
Confidence            47899999999999999999987653211   1111122222222221  345899999999532           2233


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH-
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ-  174 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~-  174 (225)
                      +..+...+|++++|+|+.+.-+... ...+..+..... ....|+++|+||+|.....  ..++.         ...+. 
T Consensus        69 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~~~~--~~~~~---------~~~~~~  136 (183)
T cd04152          69 WKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLPNAL--SVSEV---------EKLLAL  136 (183)
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCccccC--CHHHH---------HHHhCc
Confidence            3445668899999999874321111 122222333221 1347999999999975432  22221         11111 


Q ss_pred             --HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          175 --LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       175 --~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                        ......+.   ..+.||.++.++++++..|.+.+.+.
T Consensus       137 ~~~~~~~~~~---~~~~SA~~~~gi~~l~~~l~~~l~~~  172 (183)
T cd04152         137 HELSASTPWH---VQPACAIIGEGLQEGLEKLYEMILKR  172 (183)
T ss_pred             cccCCCCceE---EEEeecccCCCHHHHHHHHHHHHHHH
Confidence              11111111   12457778899999999998777543

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04113 Rab4 Rab4 subfamily

Probab=99.75  E-value=1.8e-16  Score=117.44  Aligned_cols=157  Identities=15%  Similarity=0.133  Sum_probs=93.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKD-GQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      ++|+++|++|+|||||+++|++.......  .+..+.......+...+ ...+.+|||||....           .....
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~-----------~~~~~   67 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDS--QHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERF-----------RSVTR   67 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCceeeeEEEEEEEECCEEEEEEEEECcchHHH-----------HHhHH
Confidence            47999999999999999999987643221  22222222223333312 247889999996422           22223


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      .....+|++++|+|.+++.+... ..++..++....  ...|++++.||+|.........++         ...+....+
T Consensus        68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~---------~~~~~~~~~  136 (161)
T cd04113          68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARALAS--PNIVVILVGNKSDLADQREVTFLE---------ASRFAQENG  136 (161)
T ss_pred             HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhcchhccCCHHH---------HHHHHHHcC
Confidence            34567899999999975433222 223333433322  247899999999976532111111         233444444


Q ss_pred             CcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158          178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNS  206 (225)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~  206 (225)
                      ..+.      ..|+.++.+++++++.+.+
T Consensus       137 ~~~~------~~Sa~~~~~i~~~~~~~~~  159 (161)
T cd04113         137 LLFL------ETSALTGENVEEAFLKCAR  159 (161)
T ss_pred             CEEE------EEECCCCCCHHHHHHHHHH
Confidence            3333      2344566899999988854

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04127 Rab27A Rab27a subfamily

Probab=99.75  E-value=3.9e-16  Score=117.74  Aligned_cols=164  Identities=12%  Similarity=0.061  Sum_probs=97.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-----------CCceEEEEeCCCCCCCCCCc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-----------DGQVVNVIDTPGLFDSSADS   86 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------~~~~~~liDtPG~~~~~~~~   86 (225)
                      ..++|+++|.+|+|||||++++.+......  ..+..+.+.....+.+.           ....+.||||||..      
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~------   74 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPK--FITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE------   74 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCcc--CCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH------
Confidence            348999999999999999999987654221  11111112222222221           13578999999943      


Q ss_pred             HHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcC
Q 036158           87 EFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGREC  165 (225)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~  165 (225)
                           .+..........+|++++|+|+.+.-+... ..++..+.... .....|+++|.||+|+.+......+       
T Consensus        75 -----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piiiv~nK~Dl~~~~~v~~~-------  141 (180)
T cd04127          75 -----RFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHA-YCENPDIVLCGNKADLEDQRQVSEE-------  141 (180)
T ss_pred             -----HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCcEEEEEeCccchhcCccCHH-------
Confidence                 233444456678899999999974322222 12333333221 1124689999999997654211111       


Q ss_pred             CchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          166 PKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                        ...++.+..+.++      ...|+.++.+++++++.+.+.+.+
T Consensus       142 --~~~~~~~~~~~~~------~e~Sak~~~~v~~l~~~l~~~~~~  178 (180)
T cd04127         142 --QAKALADKYGIPY------FETSAATGTNVEKAVERLLDLVMK  178 (180)
T ss_pred             --HHHHHHHHcCCeE------EEEeCCCCCCHHHHHHHHHHHHHh
Confidence              1333444444332      345666778999999999876543

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd01868 Rab11_like Rab11-like

Probab=99.75  E-value=2.5e-16  Score=117.08  Aligned_cols=158  Identities=15%  Similarity=0.123  Sum_probs=95.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .++|+++|.+|+|||||+|++.+......  ..+..+.......+.. ++  ..+.+|||||...           +...
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~   68 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLD--SKSTIGVEFATRSIQI-DGKTIKAQIWDTAGQER-----------YRAI   68 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceEEEEEEEEE-CCEEEEEEEEeCCChHH-----------HHHH
Confidence            36899999999999999999998764322  1233333333334444 34  3689999999532           2222


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      .......++++|+|+|..+..+..+ .+++..+.+...  ...|+++|.||+|.........++         ...+...
T Consensus        69 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pi~vv~nK~Dl~~~~~~~~~~---------~~~~~~~  137 (165)
T cd01868          69 TSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLRAVPTEE---------AKAFAEK  137 (165)
T ss_pred             HHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccccCCHHH---------HHHHHHH
Confidence            3345567899999999974333222 123333333221  137999999999976432111111         2333333


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                      .+..++      ..|+.++.+++++++.+.+.
T Consensus       138 ~~~~~~------~~Sa~~~~~v~~l~~~l~~~  163 (165)
T cd01868         138 NGLSFI------ETSALDGTNVEEAFKQLLTE  163 (165)
T ss_pred             cCCEEE------EEECCCCCCHHHHHHHHHHH
Confidence            333332      34556678999999988654

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.74  E-value=2.9e-16  Score=116.46  Aligned_cols=159  Identities=23%  Similarity=0.183  Sum_probs=94.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .++|+++|.+|+|||||++++++......   ..+++.........+ ++  ..+.+|||||..+..           ..
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~   66 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTD---YDPTIEDSYTKQCEI-DGQWAILDILDTAGQEEFS-----------AM   66 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcc---cCCCccceEEEEEEE-CCEEEEEEEEECCCCcchh-----------HH
Confidence            47999999999999999999997664211   122222222223344 34  368899999976431           12


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      +......+|++++|+++++.-+... ..++..+..... ....|++++.||+|.........++         ..+..+.
T Consensus        67 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~---------~~~~~~~  136 (164)
T cd04145          67 REQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKD-RDEFPMILVGNKADLEHQRKVSREE---------GQELARK  136 (164)
T ss_pred             HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCCEEEEeeCccccccceecHHH---------HHHHHHH
Confidence            2234456799999999974322222 223333333221 2247999999999976432111111         2333333


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                      .+..+      ...|+.++.+++++++.+.+.+
T Consensus       137 ~~~~~------~~~Sa~~~~~i~~l~~~l~~~~  163 (164)
T cd04145         137 LKIPY------IETSAKDRLNVDKAFHDLVRVI  163 (164)
T ss_pred             cCCcE------EEeeCCCCCCHHHHHHHHHHhh
Confidence            33332      3445667799999999987654

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04112 Rab26 Rab26 subfamily

Probab=99.74  E-value=2.1e-16  Score=120.54  Aligned_cols=164  Identities=14%  Similarity=0.120  Sum_probs=99.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      ++|+++|.+|+|||||++++.+...... ...+..........+.+ ++  ..+.||||||..           .+....
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~-~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~-----------~~~~~~   67 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNG-NFIATVGIDFRNKVVTV-DGVKVKLQIWDTAGQE-----------RFRSVT   67 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcc-CcCCcccceeEEEEEEE-CCEEEEEEEEeCCCcH-----------HHHHhh
Confidence            4799999999999999999987764221 11122221222222333 33  378899999943           122223


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      ......+|++|+|+|+..+.+... ..++..+.+....  ..|+++|.||+|+........+         ..+.+....
T Consensus        68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~NK~Dl~~~~~~~~~---------~~~~l~~~~  136 (191)
T cd04112          68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQE--DVVIMLLGNKADMSGERVVKRE---------DGERLAKEY  136 (191)
T ss_pred             HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEcccchhccccCHH---------HHHHHHHHc
Confidence            345667899999999974422221 2344444444322  3799999999997643211111         134444444


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG  213 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~  213 (225)
                      +..++      ..|+..+.+++++++.|.+.+.+...
T Consensus       137 ~~~~~------e~Sa~~~~~v~~l~~~l~~~~~~~~~  167 (191)
T cd04112         137 GVPFM------ETSAKTGLNVELAFTAVAKELKHRKY  167 (191)
T ss_pred             CCeEE------EEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence            54433      33556678999999999988877643

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04157 Arl6 Arl6 subfamily

Probab=99.74  E-value=7e-17  Score=119.57  Aligned_cols=155  Identities=14%  Similarity=0.065  Sum_probs=91.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT  100 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (225)
                      +|+++|.+|+|||||++++.+.......   ...|.......+.. .+..+.+|||||....           ...+..+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~---~~~t~g~~~~~~~~-~~~~~~l~Dt~G~~~~-----------~~~~~~~   65 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQI---IVPTVGFNVESFEK-GNLSFTAFDMSGQGKY-----------RGLWEHY   65 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcce---ecCccccceEEEEE-CCEEEEEEECCCCHhh-----------HHHHHHH
Confidence            5899999999999999999986532211   11222222333444 6778999999996532           2233345


Q ss_pred             CCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhc-ccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc--
Q 036158          101 KDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFG-KKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC--  176 (225)
Q Consensus       101 ~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  176 (225)
                      +..+|++|+|+|+.++.+... ...++.+..... .....|+++|+||+|.....  ..++..         ..+...  
T Consensus        66 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~---------~~l~~~~~  134 (162)
T cd04157          66 YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKIT---------QLLGLENI  134 (162)
T ss_pred             HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHH---------HHhCCccc
Confidence            668899999999974432211 122332222110 11247999999999976432  222211         111110  


Q ss_pred             C-CcEEEeeCCCccccccHHHHHHHHHHHH
Q 036158          177 D-NRCVLFDNKTKDTAKRTEQVGKLLSLVN  205 (225)
Q Consensus       177 ~-~~~~~~~~~~~~~~~~~~~v~~l~~~i~  205 (225)
                      . .++.    ....|+.++.++++++++|.
T Consensus       135 ~~~~~~----~~~~Sa~~g~gv~~~~~~l~  160 (162)
T cd04157         135 KDKPWH----IFASNALTGEGLDEGVQWLQ  160 (162)
T ss_pred             cCceEE----EEEeeCCCCCchHHHHHHHh
Confidence            1 1111    23456778899999999885

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.74  E-value=2.8e-16  Score=116.48  Aligned_cols=160  Identities=19%  Similarity=0.158  Sum_probs=94.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      .++|+++|++|+|||||+|++++...........+  .......+.+. ....+.+|||||...           +....
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~v~~~~~~~~~~i~D~~G~~~-----------~~~~~   67 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIG--AAFLTQTVNLDDTTVKFEIWDTAGQER-----------YRSLA   67 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccc--eeEEEEEEEECCEEEEEEEEeCCchHH-----------HHHHH
Confidence            36899999999999999999998875332111111  11112233331 224788999999532           22222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      ......+|++++|+|..+.-+-. ...++..+.....  ...|++++.||+|.........++         ..++....
T Consensus        68 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~~~~~---------~~~~~~~~  136 (163)
T cd01860          68 PMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS--PNIIIALVGNKADLESKRQVSTEE---------AQEYADEN  136 (163)
T ss_pred             HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccCcCCHHH---------HHHHHHHc
Confidence            33456789999999987332211 1233444444321  237899999999976432111111         23344444


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                      +..+      .+.|+.++.+++++++.+.+.+
T Consensus       137 ~~~~------~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd01860         137 GLLF------FETSAKTGENVNELFTEIAKKL  162 (163)
T ss_pred             CCEE------EEEECCCCCCHHHHHHHHHHHh
Confidence            4333      3345556789999999987653

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01890 LepA LepA subfamily

Probab=99.74  E-value=2.4e-17  Score=124.21  Aligned_cols=158  Identities=20%  Similarity=0.181  Sum_probs=94.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCcccccc-------------CCCCCceeEEEEEEEEe----eCCceEEEEeCCCCCCCC
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSK-------------AGSSGVTKTCEMQRTML----KDGQVVNVIDTPGLFDSS   83 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~-------------~~~~~~t~~~~~~~~~~----~~~~~~~liDtPG~~~~~   83 (225)
                      +|+++|.+|+|||||+++|++.......             ....+.|.........+    ..+..+.||||||+.++.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            6999999999999999999874321000             00112333333223322    134578899999986431


Q ss_pred             CCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhh
Q 036158           84 ADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR  163 (225)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~  163 (225)
                                 ..+..++..+|++|+|+|+.+..+..+...+..+..     ...|+++|+||+|+....   ..+..  
T Consensus        82 -----------~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~-----~~~~iiiv~NK~Dl~~~~---~~~~~--  140 (179)
T cd01890          82 -----------YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE-----NNLEIIPVINKIDLPSAD---PERVK--  140 (179)
T ss_pred             -----------HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH-----cCCCEEEEEECCCCCcCC---HHHHH--
Confidence                       122233456799999999975555444444433222     237899999999975432   12111  


Q ss_pred             cCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          164 ECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                            .++.+..+...   ......|+.++.++++|++.+.+.+
T Consensus       141 ------~~~~~~~~~~~---~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         141 ------QQIEDVLGLDP---SEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             ------HHHHHHhCCCc---ccEEEeeccCCCCHHHHHHHHHhhC
Confidence                  22222223211   1124567778899999999997654

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.74  E-value=1e-16  Score=140.18  Aligned_cols=163  Identities=16%  Similarity=0.201  Sum_probs=106.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ...++|+++|++|+|||||+++|.+......  ...+.|.+...+.+.++++..+.||||||+.++.           ..
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~--e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~-----------~~  151 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQG--EAGGITQHIGAYHVENEDGKMITFLDTPGHEAFT-----------SM  151 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccc--cCCceeecceEEEEEECCCcEEEEEECCCCcchh-----------hH
Confidence            3558999999999999999999998765332  2345677766677777334489999999987542           12


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      .......+|++++|+++++.......+.+..+..     ...|+++++||+|............+.+     ..-....+
T Consensus       152 r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~-----~~vPiIVviNKiDl~~~~~e~v~~~L~~-----~g~~~~~~  221 (587)
T TIGR00487       152 RARGAKVTDIVVLVVAADDGVMPQTIEAISHAKA-----ANVPIIVAINKIDKPEANPDRVKQELSE-----YGLVPEDW  221 (587)
T ss_pred             HHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHH-----cCCCEEEEEECcccccCCHHHHHHHHHH-----hhhhHHhc
Confidence            2234567899999999986666666555544332     2379999999999754321122222111     00011222


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNS  206 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~  206 (225)
                      +....    ..+.||.++.++++|++.|..
T Consensus       222 ~~~~~----~v~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       222 GGDTI----FVPVSALTGDGIDELLDMILL  247 (587)
T ss_pred             CCCce----EEEEECCCCCChHHHHHhhhh
Confidence            22211    234677788999999998864

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.74  E-value=6.9e-17  Score=119.46  Aligned_cols=157  Identities=13%  Similarity=0.123  Sum_probs=92.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT  100 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (225)
                      +|+++|.+|+|||||+|++.+......     ..|.......+..+.+..+.+|||||...           +...+...
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~~~~~   64 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-----IPTVGFNVEMLQLEKHLSLTVWDVGGQEK-----------MRTVWKCY   64 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-----cCccCcceEEEEeCCceEEEEEECCCCHh-----------HHHHHHHH
Confidence            589999999999999999998775322     12222233344443456899999999642           22223334


Q ss_pred             CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158          101 KDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN  178 (225)
Q Consensus       101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (225)
                      ...+|++++|+|+.+..+  ......++.+.+...  ...|+++|+||+|.....  ..++....     + .+...+..
T Consensus        65 ~~~~~~iv~v~D~~~~~~--~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~-----~-~~~~~~~~  134 (160)
T cd04156          65 LENTDGLVYVVDSSDEAR--LDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--TAEEITRR-----F-KLKKYCSD  134 (160)
T ss_pred             hccCCEEEEEEECCcHHH--HHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--CHHHHHHH-----c-CCcccCCC
Confidence            567899999999974321  112223333333221  247999999999975332  22222111     0 00011111


Q ss_pred             cEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158          179 RCVLFDNKTKDTAKRTEQVGKLLSLVNS  206 (225)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~v~~l~~~i~~  206 (225)
                      +-+.   ..+.||.++.+++++++.|.+
T Consensus       135 ~~~~---~~~~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156         135 RDWY---VQPCSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             CcEE---EEecccccCCChHHHHHHHhc
Confidence            1111   235677888999999998864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.74  E-value=2.1e-16  Score=119.64  Aligned_cols=162  Identities=13%  Similarity=0.096  Sum_probs=98.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ....+|+++|.+|+|||||++++........     .+|.......+.. .+..+.+|||||...           +...
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~-----~~T~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~   77 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTT-----IPTIGFNVETVEY-KNLKFTMWDVGGQDK-----------LRPL   77 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-----CCccccceEEEEE-CCEEEEEEECCCCHh-----------HHHH
Confidence            4458999999999999999999975443211     1233333444555 678899999999642           2233


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      +..++..+|++|+|+|++++-+-.  ...+.+.+.+...  ...|+++|.||.|..+..  ..++....     +.  +.
T Consensus        78 ~~~~~~~ad~iI~v~D~t~~~s~~--~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~-----l~--~~  146 (182)
T PTZ00133         78 WRHYYQNTNGLIFVVDSNDRERIG--DAREELERMLSEDELRDAVLLVFANKQDLPNAM--STTEVTEK-----LG--LH  146 (182)
T ss_pred             HHHHhcCCCEEEEEEeCCCHHHHH--HHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--CHHHHHHH-----hC--CC
Confidence            445677889999999997432111  2223334333221  237899999999975432  22221111     00  01


Q ss_pred             HcCCc-EEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          175 LCDNR-CVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       175 ~~~~~-~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      .+..+ ++.+    ..||.++.++++++++|.+.+.+
T Consensus       147 ~~~~~~~~~~----~~Sa~tg~gv~e~~~~l~~~i~~  179 (182)
T PTZ00133        147 SVRQRNWYIQ----GCCATTAQGLYEGLDWLSANIKK  179 (182)
T ss_pred             cccCCcEEEE----eeeCCCCCCHHHHHHHHHHHHHH
Confidence            11111 2222    34667789999999999876654

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.74  E-value=1.9e-16  Score=142.20  Aligned_cols=164  Identities=15%  Similarity=0.131  Sum_probs=109.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCc--HHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS--EFVSKEIVKC   96 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~--~~~~~~~~~~   96 (225)
                      ..+|+++|.+|+|||||+|+|+|.... . ...+++|.+.....+.+ ++..+.++||||+++.....  ....+.+...
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~-v-gn~pGvTve~k~g~~~~-~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~   79 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQR-V-GNWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCc-c-CCCCCceEeeEEEEEEc-CceEEEEEECCCccccccccccccHHHHHHHH
Confidence            478999999999999999999998752 2 34578888877777777 77899999999998764321  1222222221


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                       ......+|++++|+|++ .+.. ...+...+.+     ...|+++++||+|..+..  .+..-        .+++-+..
T Consensus        80 -~l~~~~aD~vI~VvDat-~ler-~l~l~~ql~e-----~giPvIvVlNK~Dl~~~~--~i~id--------~~~L~~~L  141 (772)
T PRK09554         80 -YILSGDADLLINVVDAS-NLER-NLYLTLQLLE-----LGIPCIVALNMLDIAEKQ--NIRID--------IDALSARL  141 (772)
T ss_pred             -HHhccCCCEEEEEecCC-cchh-hHHHHHHHHH-----cCCCEEEEEEchhhhhcc--CcHHH--------HHHHHHHh
Confidence             12235789999999997 3322 2223333333     248999999999976443  22211        33344444


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      +.+++.      .++.++.+++++.+.+.+..+
T Consensus       142 G~pVvp------iSA~~g~GIdeL~~~I~~~~~  168 (772)
T PRK09554        142 GCPVIP------LVSTRGRGIEALKLAIDRHQA  168 (772)
T ss_pred             CCCEEE------EEeecCCCHHHHHHHHHHhhh
Confidence            554443      344566889999999987764

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.74  E-value=3.2e-16  Score=116.09  Aligned_cols=157  Identities=19%  Similarity=0.130  Sum_probs=92.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee---CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK---DGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ++|+++|.+|+|||||+|++.+......  ..+..+.......+.+.   ....+.+|||||...           +...
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----------~~~~   67 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKD--YKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEE-----------FDAI   67 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHH-----------HHHh
Confidence            4799999999999999999997654221  11222222222333331   234799999999432           2223


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      ...+...+|++++|++++++.+..  ....++..........|+++|.||+|.........++         ...+.+..
T Consensus        68 ~~~~~~~~~~~v~v~d~~~~~s~~--~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~---------~~~~~~~~  136 (162)
T cd04106          68 TKAYYRGAQACILVFSTTDRESFE--AIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEE---------AEALAKRL  136 (162)
T ss_pred             HHHHhcCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHH---------HHHHHHHc
Confidence            334567889999999987432222  2222332221111247999999999986543111111         33444444


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNS  206 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~  206 (225)
                      +.+++.      .|+..+.+++++++.|.+
T Consensus       137 ~~~~~~------~Sa~~~~~v~~l~~~l~~  160 (162)
T cd04106         137 QLPLFR------TSVKDDFNVTELFEYLAE  160 (162)
T ss_pred             CCeEEE------EECCCCCCHHHHHHHHHH
Confidence            544333      344556889999988864

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.74  E-value=8.2e-17  Score=124.41  Aligned_cols=137  Identities=15%  Similarity=0.157  Sum_probs=90.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccccc-----------------------------cCCCCCceeEEEEEEEEeeCCceE
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKS-----------------------------KAGSSGVTKTCEMQRTMLKDGQVV   71 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~~~~~~   71 (225)
                      +|+++|++|+|||||+|+|+.......                             .....+.|.......+.+ ++..+
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~   79 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKF   79 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceE
Confidence            589999999999999999986543211                             011256677777777777 78899


Q ss_pred             EEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158           72 NVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELE  151 (225)
Q Consensus        72 ~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~  151 (225)
                      .|+||||+.++           ...+......+|++|+|+|+..+....+...+..+.. .+   .+++++|+||+|...
T Consensus        80 ~liDTpG~~~~-----------~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~-~~---~~~iIvviNK~D~~~  144 (208)
T cd04166          80 IIADTPGHEQY-----------TRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSL-LG---IRHVVVAVNKMDLVD  144 (208)
T ss_pred             EEEECCcHHHH-----------HHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHH-cC---CCcEEEEEEchhccc
Confidence            99999997432           1122234557899999999986665555554444433 22   146788999999865


Q ss_pred             CCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158          152 DNDETLEDYLGRECPKPLKEILQLCDN  178 (225)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (225)
                      .....+.....+     +++++...+.
T Consensus       145 ~~~~~~~~i~~~-----~~~~~~~~~~  166 (208)
T cd04166         145 YSEEVFEEIVAD-----YLAFAAKLGI  166 (208)
T ss_pred             CCHHHHHHHHHH-----HHHHHHHcCC
Confidence            432223333334     5666666664

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd04120 Rab12 Rab12 subfamily

Probab=99.74  E-value=3.4e-16  Score=120.14  Aligned_cols=162  Identities=14%  Similarity=0.177  Sum_probs=99.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      +.|+++|..|+|||||++++...... . ...+..+.......+.+ ++  ..+.+|||+|...           +...+
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~-~-~~~~Ti~~~~~~~~i~~-~~~~v~l~iwDtaGqe~-----------~~~l~   66 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFC-E-ACKSGVGVDFKIKTVEL-RGKKIRLQIWDTAGQER-----------FNSIT   66 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCC-C-cCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCchh-----------hHHHH
Confidence            35899999999999999999876532 2 11222333444445555 44  5789999999642           23334


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEEG-AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      ..++.++|++|+|+|++++.+-... .+++.+.+...  ...|+++|.||+|+....  .+...       ...++....
T Consensus        67 ~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~--~~~piilVgNK~DL~~~~--~v~~~-------~~~~~a~~~  135 (202)
T cd04120          67 SAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS--EDAELLLVGNKLDCETDR--EISRQ-------QGEKFAQQI  135 (202)
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECccccccc--ccCHH-------HHHHHHHhc
Confidence            4567789999999999855433332 23344443322  247999999999975432  11111       012222221


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      . .+.+|    .+||+++.+++++++.+.+.+.+.
T Consensus       136 ~-~~~~~----etSAktg~gV~e~F~~l~~~~~~~  165 (202)
T cd04120         136 T-GMRFC----EASAKDNFNVDEIFLKLVDDILKK  165 (202)
T ss_pred             C-CCEEE----EecCCCCCCHHHHHHHHHHHHHHh
Confidence            1 12222    456677899999999998776543

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.74  E-value=1.3e-16  Score=119.88  Aligned_cols=156  Identities=14%  Similarity=0.097  Sum_probs=95.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      +..+|+++|.+|+|||||++++++.....     ...|.......+.+ .+..+.+|||||...           +...+
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-----~~~t~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~   76 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-----TSPTIGSNVEEIVY-KNIRFLMWDIGGQES-----------LRSSW   76 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC-----cCCccccceEEEEE-CCeEEEEEECCCCHH-----------HHHHH
Confidence            46899999999999999999998765422     12333344455566 678899999999642           22333


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      ..++.++|++++|+|++++-+  .....+.+.+.+...  ...|+++++||+|.....  ..++..+.     +.  ...
T Consensus        77 ~~~~~~~d~vi~V~D~s~~~~--~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~--~~~~i~~~-----l~--~~~  145 (174)
T cd04153          77 NTYYTNTDAVILVIDSTDRER--LPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM--TPAEISES-----LG--LTS  145 (174)
T ss_pred             HHHhhcCCEEEEEEECCCHHH--HHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC--CHHHHHHH-----hC--ccc
Confidence            345668899999999974321  111222333332221  247999999999975432  22222111     00  001


Q ss_pred             cC-CcEEEeeCCCccccccHHHHHHHHHHHH
Q 036158          176 CD-NRCVLFDNKTKDTAKRTEQVGKLLSLVN  205 (225)
Q Consensus       176 ~~-~~~~~~~~~~~~~~~~~~~v~~l~~~i~  205 (225)
                      .. ..+..    .+.||.++.++++++++|.
T Consensus       146 ~~~~~~~~----~~~SA~~g~gi~e~~~~l~  172 (174)
T cd04153         146 IRDHTWHI----QGCCALTGEGLPEGLDWIA  172 (174)
T ss_pred             ccCCceEE----EecccCCCCCHHHHHHHHh
Confidence            11 12222    2456777899999999885

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.74  E-value=2.3e-16  Score=116.58  Aligned_cols=157  Identities=17%  Similarity=0.182  Sum_probs=93.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      ++|+++|.+|+|||||+|++++......   ..+++.........+ ++.  .+.+|||||....           ...+
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~l~   66 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDE---YDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEY-----------SAMR   66 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCC---cCCcchheEEEEEEE-CCEEEEEEEEECCCCcch-----------HHHH
Confidence            6899999999999999999997664222   112222222223344 333  5778999996532           2222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      ..+...+|++++|++.+++.+..+ ..++..+.+... ....|+++|.||+|..... ...++         ..++....
T Consensus        67 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~~~-~~~~~---------~~~~~~~~  135 (162)
T cd04138          67 DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKD-SDDVPMVLVGNKCDLAART-VSSRQ---------GQDLAKSY  135 (162)
T ss_pred             HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccce-ecHHH---------HHHHHHHh
Confidence            334557799999999874322222 123334443321 1247999999999976532 11111         23333333


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                      +..++      ..|+.++.+++++++.+.+.+
T Consensus       136 ~~~~~------~~Sa~~~~gi~~l~~~l~~~~  161 (162)
T cd04138         136 GIPYI------ETSAKTRQGVEEAFYTLVREI  161 (162)
T ss_pred             CCeEE------EecCCCCCCHHHHHHHHHHHh
Confidence            43322      345667799999999887543

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04136 Rap_like Rap-like subfamily

Probab=99.74  E-value=2.8e-16  Score=116.42  Aligned_cols=157  Identities=14%  Similarity=0.126  Sum_probs=93.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      ++|+++|.+|+|||||++++........   ..+++.......+.. ++  ..+.+|||||...+.           ...
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~~   66 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEK---YDPTIEDSYRKQIEV-DGQQCMLEILDTAGTEQFT-----------AMR   66 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcc---cCCchhhhEEEEEEE-CCEEEEEEEEECCCccccc-----------hHH
Confidence            6899999999999999999997653221   112222222233444 33  357789999975432           222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      ..+...+|++++|+|.++..+.+. ..+++.+.+... ....|+++|.||+|.........++         ...+.+..
T Consensus        67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~~  136 (163)
T cd04136          67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKD-TENVPMVLVGNKCDLEDERVVSREE---------GQALARQW  136 (163)
T ss_pred             HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceecHHH---------HHHHHHHc
Confidence            334567899999999974332222 223344443321 1247999999999976432111111         22333333


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                      +.++      ...|+.++.++.++++.+.+.
T Consensus       137 ~~~~------~~~Sa~~~~~v~~l~~~l~~~  161 (163)
T cd04136         137 GCPF------YETSAKSKINVDEVFADLVRQ  161 (163)
T ss_pred             CCeE------EEecCCCCCCHHHHHHHHHHh
Confidence            4222      244556678999999988654

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04123 Rab21 Rab21 subfamily

Probab=99.73  E-value=4.7e-16  Score=114.90  Aligned_cols=159  Identities=13%  Similarity=0.094  Sum_probs=94.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      .+|+++|.+|+|||||+|++++......  ..+..+.......+.+. ....+.+|||||....           .....
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-----------~~~~~   67 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEK--HESTTQASFFQKTVNIGGKRIDLAIWDTAGQERY-----------HALGP   67 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCC--cCCccceeEEEEEEEECCEEEEEEEEECCchHHH-----------HHhhH
Confidence            4799999999999999999998765322  11222222222233331 1236899999995321           12222


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      .....+|++++|+|..+..+... ..+++.+......  ..|+++|+||+|.........++         ..++.+..+
T Consensus        68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~~~~~~~~~---------~~~~~~~~~  136 (162)
T cd04123          68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLERQRVVSKSE---------AEEYAKSVG  136 (162)
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccccCCCHHH---------HHHHHHHcC
Confidence            34567899999999874432222 2233444444332  47999999999976432111111         233444434


Q ss_pred             CcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                      ..++      ..|+.++.+++++++.+.+.+
T Consensus       137 ~~~~------~~s~~~~~gi~~~~~~l~~~~  161 (162)
T cd04123         137 AKHF------ETSAKTGKGIEELFLSLAKRM  161 (162)
T ss_pred             CEEE------EEeCCCCCCHHHHHHHHHHHh
Confidence            4333      334556689999999987654

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.73  E-value=4.7e-16  Score=117.62  Aligned_cols=161  Identities=14%  Similarity=0.098  Sum_probs=99.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      +..++|+++|..|+|||||++++.......     ..+|.......+.. .+..+.+|||||..           .+...
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-----~~pt~g~~~~~~~~-~~~~~~i~D~~Gq~-----------~~~~~   77 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-----TIPTIGFNVETVEY-KNISFTVWDVGGQD-----------KIRPL   77 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCcc-----ccCCcceeEEEEEE-CCEEEEEEECCCCH-----------HHHHH
Confidence            556899999999999999999998654321     12233334444555 67889999999953           22333


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      +..++..+|++|+|+|+.++.+-  .....++...+...  ...|++++.||.|.....  ..+++         .+.+.
T Consensus        78 ~~~~~~~a~~iI~V~D~s~~~s~--~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~~~---------~~~l~  144 (181)
T PLN00223         78 WRHYFQNTQGLIFVVDSNDRDRV--VEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEI---------TDKLG  144 (181)
T ss_pred             HHHHhccCCEEEEEEeCCcHHHH--HHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHHHH---------HHHhC
Confidence            44566788999999999743221  12333444443221  247999999999975432  22222         11111


Q ss_pred             Hc--CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          175 LC--DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       175 ~~--~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      -.  ..+.+.+   .+.||.++.++.+++++|.+.+..
T Consensus       145 l~~~~~~~~~~---~~~Sa~~g~gv~e~~~~l~~~~~~  179 (181)
T PLN00223        145 LHSLRQRHWYI---QSTCATSGEGLYEGLDWLSNNIAN  179 (181)
T ss_pred             ccccCCCceEE---EeccCCCCCCHHHHHHHHHHHHhh
Confidence            11  1111111   234667789999999999876544

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.73  E-value=2.9e-17  Score=139.84  Aligned_cols=143  Identities=17%  Similarity=0.268  Sum_probs=96.8

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhCCccccc-----------------------------cCCCCCceeEEEEEEEEe
Q 036158           15 PSNGERNLVLVGRTGNGKSATANSILGKRAFKS-----------------------------KAGSSGVTKTCEMQRTML   65 (225)
Q Consensus        15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~   65 (225)
                      +.++.++|+++|+.++|||||+++|+.......                             ....++.|++.....+++
T Consensus         2 ~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~   81 (425)
T PRK12317          2 KEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET   81 (425)
T ss_pred             CCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec
Confidence            346789999999999999999999985432211                             111467888888888888


Q ss_pred             eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhcccccccEEEE
Q 036158           66 KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRN--RFSEEEGAAIHILESLFGKKISDYMIVV  143 (225)
Q Consensus        66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~vv  143 (225)
                       ++..+.||||||+.++.       ..+    ......+|++++|+|+.+  .....+.+.+..+.. ++.   ++++++
T Consensus        82 -~~~~i~liDtpG~~~~~-------~~~----~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~---~~iivv  145 (425)
T PRK12317         82 -DKYYFTIVDCPGHRDFV-------KNM----ITGASQADAAVLVVAADDAGGVMPQTREHVFLART-LGI---NQLIVA  145 (425)
T ss_pred             -CCeEEEEEECCCcccch-------hhH----hhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCC---CeEEEE
Confidence             78899999999975432       111    123457899999999986  555555555555443 221   478999


Q ss_pred             EecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158          144 FTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN  178 (225)
Q Consensus       144 ~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (225)
                      +||+|+.......+....++     +++++..++.
T Consensus       146 iNK~Dl~~~~~~~~~~~~~~-----i~~~l~~~g~  175 (425)
T PRK12317        146 INKMDAVNYDEKRYEEVKEE-----VSKLLKMVGY  175 (425)
T ss_pred             EEccccccccHHHHHHHHHH-----HHHHHHhhCC
Confidence            99999865322233333334     5666665553

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.73  E-value=3.6e-16  Score=120.20  Aligned_cols=165  Identities=12%  Similarity=0.046  Sum_probs=99.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK--DGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      ++|+++|.+|+|||||++++++......  ..+....+.....+.++  ....+.+|||||...+           ...+
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~--~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~-----------~~~~   67 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQH--YKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERF-----------GGMT   67 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCceeEEEEEEEEEECCCCEEEEEEEECCCchhh-----------hhhH
Confidence            4799999999999999999997653221  11222222223334442  2347899999996422           2233


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhc--ccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEEG-AAIHILESLFG--KKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~~-~~~~~l~~~~~--~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      ..++..+|++|+|+|..++.+-... .++..+.....  .....|+++|.||+|+........++         +.++.+
T Consensus        68 ~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~---------~~~~~~  138 (201)
T cd04107          68 RVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQ---------MDQFCK  138 (201)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHH---------HHHHHH
Confidence            4456788999999999744332222 22333433221  12347999999999986322111111         344444


Q ss_pred             HcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          175 LCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       175 ~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                      ..+. .+      ...|+..+.+++++++.|.+.+.+..
T Consensus       139 ~~~~~~~------~e~Sak~~~~v~e~f~~l~~~l~~~~  171 (201)
T cd04107         139 ENGFIGW------FETSAKEGINIEEAMRFLVKNILAND  171 (201)
T ss_pred             HcCCceE------EEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            4442 22      24466677899999999998776653

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.73  E-value=3.9e-16  Score=115.89  Aligned_cols=159  Identities=19%  Similarity=0.150  Sum_probs=94.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      .+|+++|.+|+|||||+|++.+......   ...++.......... ++  ..+.+|||||..+..           ...
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~-----------~~~   65 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDD---YDPTIEDSYRKQIEI-DGEVCLLDILDTAGQEEFS-----------AMR   65 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcc---cCCchhhhEEEEEEE-CCEEEEEEEEECCCcccch-----------HHH
Confidence            3799999999999999999997664221   112222222233333 33  468899999976432           111


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      ......+|++++|+|++++-+... ..+...+.+... ....|+++|.||+|.........++         ...+.+..
T Consensus        66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~pii~v~nK~Dl~~~~~~~~~~---------~~~~~~~~  135 (164)
T smart00173       66 DQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKD-RDDVPIVLVGNKCDLESERVVSTEE---------GKELARQW  135 (164)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceEcHHH---------HHHHHHHc
Confidence            223456799999999974322222 222333333221 1247999999999976532111111         23344444


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      +.++      .+.|+.++.+++++++.|.+.+.
T Consensus       136 ~~~~------~~~Sa~~~~~i~~l~~~l~~~~~  162 (164)
T smart00173      136 GCPF------LETSAKERVNVDEAFYDLVREIR  162 (164)
T ss_pred             CCEE------EEeecCCCCCHHHHHHHHHHHHh
Confidence            4333      34455667899999999976654

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd01863 Rab18 Rab18 subfamily

Probab=99.73  E-value=2.9e-16  Score=116.25  Aligned_cols=158  Identities=15%  Similarity=0.117  Sum_probs=92.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      ++|+++|++|+|||||+|+|++........  +..+.......+.+. ....+.+|||||....           .....
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----------~~~~~   67 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLA--ATIGVDFKVKTLTVDGKKVKLAIWDTAGQERF-----------RTLTS   67 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccC--CcccceEEEEEEEECCEEEEEEEEECCCchhh-----------hhhhH
Confidence            479999999999999999999876432222  222222222223331 2247899999996432           12222


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      .....+|++++|+|..+..+... ..++..+.... .....|+++|.||+|..... ...++         ..++....+
T Consensus        68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~~~iv~nK~D~~~~~-~~~~~---------~~~~~~~~~  136 (161)
T cd01863          68 SYYRGAQGVILVYDVTRRDTFTNLETWLNELETYS-TNNDIVKMLVGNKIDKENRE-VTREE---------GLKFARKHN  136 (161)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhC-CCCCCcEEEEEECCcccccc-cCHHH---------HHHHHHHcC
Confidence            34567899999999874333222 12333344332 22347899999999986332 11221         233333333


Q ss_pred             CcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                      ..++      ..|+..+.+++++++.+.+.
T Consensus       137 ~~~~------~~Sa~~~~gi~~~~~~~~~~  160 (161)
T cd01863         137 MLFI------ETSAKTRDGVQQAFEELVEK  160 (161)
T ss_pred             CEEE------EEecCCCCCHHHHHHHHHHh
Confidence            3332      34455668999999887653

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04118 Rab24 Rab24 subfamily

Probab=99.73  E-value=7.4e-16  Score=117.61  Aligned_cols=163  Identities=16%  Similarity=0.189  Sum_probs=95.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEE--EEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTC--EMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ++|+++|.+|+|||||++++++..... ..  ...|...  ....+.+ ++.  .+.+|||||.....           .
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~-~~--~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~-----------~   65 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLV-GP--YQNTIGAAFVAKRMVV-GERVVTLGIWDTAGSERYE-----------A   65 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCC-cC--cccceeeEEEEEEEEE-CCEEEEEEEEECCCchhhh-----------h
Confidence            479999999999999999999766421 11  1222222  2223444 343  56799999965321           1


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      .....+..+|++++|+|+++.-+... ..+++.+...   ....|+++|.||+|+.+... ......    .....++..
T Consensus        66 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~~~~-~~~~v~----~~~~~~~~~  137 (193)
T cd04118          66 MSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL---EEHCKIYLCGTKSDLIEQDR-SLRQVD----FHDVQDFAD  137 (193)
T ss_pred             hhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhc---CCCCCEEEEEEccccccccc-ccCccC----HHHHHHHHH
Confidence            12234567899999999974322211 2234444332   22479999999999754320 000000    011233333


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ..+..++      ..|+.++.++++|++.+.+.+.++
T Consensus       138 ~~~~~~~------~~Sa~~~~gv~~l~~~i~~~~~~~  168 (193)
T cd04118         138 EIKAQHF------ETSSKTGQNVDELFQKVAEDFVSR  168 (193)
T ss_pred             HcCCeEE------EEeCCCCCCHHHHHHHHHHHHHHh
Confidence            3343332      345566789999999999877554

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04110 Rab35 Rab35 subfamily

Probab=99.73  E-value=8.9e-16  Score=117.86  Aligned_cols=163  Identities=17%  Similarity=0.163  Sum_probs=98.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ..++|+++|.+|+|||||++++.+......  ..+..+.......+.+ ++  ..+.||||||....           ..
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~-----------~~   70 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGS--YITTIGVDFKIRTVEI-NGERVKLQIWDTAGQERF-----------RT   70 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCC--cCccccceeEEEEEEE-CCEEEEEEEEeCCCchhH-----------HH
Confidence            358999999999999999999997764221  1122222222233444 33  36889999995422           22


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      ....+...++++++|+|+.++.+-.  ....++..+.......|+++|.||+|+.+......++         ..++...
T Consensus        71 ~~~~~~~~a~~iilv~D~~~~~s~~--~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~---------~~~~~~~  139 (199)
T cd04110          71 ITSTYYRGTHGVIVVYDVTNGESFV--NVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETED---------AYKFAGQ  139 (199)
T ss_pred             HHHHHhCCCcEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHH---------HHHHHHH
Confidence            2334566789999999997442222  2223333332222347899999999976543111111         2333333


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      .+..++      ..|+.++.+++++++.|.+.+...
T Consensus       140 ~~~~~~------e~Sa~~~~gi~~lf~~l~~~~~~~  169 (199)
T cd04110         140 MGISLF------ETSAKENINVEEMFNCITELVLRA  169 (199)
T ss_pred             cCCEEE------EEECCCCcCHHHHHHHHHHHHHHh
Confidence            343322      345566789999999998777554

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd01893 Miro1 Miro1 subfamily

Probab=99.73  E-value=1.7e-16  Score=118.29  Aligned_cols=159  Identities=14%  Similarity=0.157  Sum_probs=92.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEe-eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTML-KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (225)
                      +|+++|.+|+|||||+|++.+......   .+....... ....+ .....+.+|||||..+..       ..+    ..
T Consensus         2 kv~ivG~~~vGKTsl~~~l~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~----~~   66 (166)
T cd01893           2 RIVLIGDEGVGKSSLIMSLVSEEFPEN---VPRVLPEIT-IPADVTPERVPTTIVDTSSRPQDR-------ANL----AA   66 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCCcc---CCCcccceE-eeeeecCCeEEEEEEeCCCchhhh-------HHH----hh
Confidence            799999999999999999998664222   111111111 11111 134578999999976431       111    12


Q ss_pred             cCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158          100 TKDGIHAVLVVFSVRNRFSEEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus       100 ~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      ....+|++++|+|..++.+...  ..++..++... .  ..|+++|.||+|+.+..  ........     +..+.....
T Consensus        67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~--~~pviiv~nK~Dl~~~~--~~~~~~~~-----~~~~~~~~~  136 (166)
T cd01893          67 EIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG-V--KVPIILVGNKSDLRDGS--SQAGLEEE-----MLPIMNEFR  136 (166)
T ss_pred             hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEEchhccccc--chhHHHHH-----HHHHHHHHh
Confidence            3467899999999874433333  12444455432 2  47999999999986543  11111111     222222222


Q ss_pred             CcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                      . .   ......|+.++.+++++++.+.+.+
T Consensus       137 ~-~---~~~~e~Sa~~~~~v~~lf~~~~~~~  163 (166)
T cd01893         137 E-I---ETCVECSAKTLINVSEVFYYAQKAV  163 (166)
T ss_pred             c-c---cEEEEeccccccCHHHHHHHHHHHh
Confidence            1 0   1223556677799999999887654

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04144 Ras2 Ras2 subfamily

Probab=99.73  E-value=2.3e-16  Score=120.22  Aligned_cols=164  Identities=15%  Similarity=0.170  Sum_probs=97.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      +|+++|.+|+|||||++++........   ..+++.........+ ++.  .+.+|||||....           .....
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~---~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~~~   65 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVET---YDPTIEDSYRKQVVV-DGQPCMLEVLDTAGQEEY-----------TALRD   65 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcc---CCCchHhhEEEEEEE-CCEEEEEEEEECCCchhh-----------HHHHH
Confidence            589999999999999999986653221   112121111222334 343  5889999996432           12223


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGK-KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      .++..+|++|+|+|.++..+... ..++..+...... ....|+++|.||+|+.........+         ..++....
T Consensus        66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~---------~~~~~~~~  136 (190)
T cd04144          66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEE---------GAALARRL  136 (190)
T ss_pred             HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHH---------HHHHHHHh
Confidence            35567899999999974433222 2344444443321 1347999999999976432111111         23333444


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCC
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQ  214 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~  214 (225)
                      +..+      ...||.++.+++++++.+.+.+.++...
T Consensus       137 ~~~~------~e~SAk~~~~v~~l~~~l~~~l~~~~~~  168 (190)
T cd04144         137 GCEF------IEASAKTNVNVERAFYTLVRALRQQRQG  168 (190)
T ss_pred             CCEE------EEecCCCCCCHHHHHHHHHHHHHHhhcc
Confidence            4333      2446667799999999999877665443

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.73  E-value=1.1e-16  Score=143.33  Aligned_cols=162  Identities=14%  Similarity=0.142  Sum_probs=108.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ...++|+++|+.++|||||+++|.+..+...  ...+.|.....+.+.+ ++..++||||||+.++.           ..
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~--e~~GIT~~iga~~v~~-~~~~ItfiDTPGhe~F~-----------~m  353 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAG--EAGGITQHIGAYQVET-NGGKITFLDTPGHEAFT-----------AM  353 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccc--ccCceeeeccEEEEEE-CCEEEEEEECCCCccch-----------hH
Confidence            4568999999999999999999987665322  2456677777777888 67899999999987652           11


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      +......+|++|+|++++++....+.+.+..+..     ...|++|++||+|+...   ..+....+ +.. ...+.+.+
T Consensus       354 ~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~-----~~vPiIVviNKiDl~~a---~~e~V~~e-L~~-~~~~~e~~  423 (787)
T PRK05306        354 RARGAQVTDIVVLVVAADDGVMPQTIEAINHAKA-----AGVPIIVAINKIDKPGA---NPDRVKQE-LSE-YGLVPEEW  423 (787)
T ss_pred             HHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHh-----cCCcEEEEEECcccccc---CHHHHHHH-HHH-hcccHHHh
Confidence            1234456799999999987766666666654443     23789999999998543   22222222 000 01112223


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNS  206 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~  206 (225)
                      +..+.    ..+.|+.++.++++|++.|..
T Consensus       424 g~~vp----~vpvSAktG~GI~eLle~I~~  449 (787)
T PRK05306        424 GGDTI----FVPVSAKTGEGIDELLEAILL  449 (787)
T ss_pred             CCCce----EEEEeCCCCCCchHHHHhhhh
Confidence            32222    234567778999999999864

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.73  E-value=3e-16  Score=124.54  Aligned_cols=131  Identities=19%  Similarity=0.243  Sum_probs=98.6

Q ss_pred             CCCCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCc-HHHH
Q 036158           12 PTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS-EFVS   90 (225)
Q Consensus        12 ~~~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~-~~~~   90 (225)
                      +++-....++|+|.|.+|+|||||++.|++.++  ....++.+|...+...++. ++..+.+|||||+-|-.... ..+.
T Consensus       161 LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp--EvA~YPFTTK~i~vGhfe~-~~~R~QvIDTPGlLDRPl~ErN~IE  237 (346)
T COG1084         161 LPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP--EVAPYPFTTKGIHVGHFER-GYLRIQVIDTPGLLDRPLEERNEIE  237 (346)
T ss_pred             CCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC--ccCCCCccccceeEeeeec-CCceEEEecCCcccCCChHHhcHHH
Confidence            445556789999999999999999999999887  4556889999999999998 78899999999999754322 1222


Q ss_pred             HHHHHHHhhcCCCccEEEEEEeCCC--CCCHH-HHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158           91 KEIVKCIGMTKDGIHAVLVVFSVRN--RFSEE-EGAAIHILESLFGKKISDYMIVVFTGGDELED  152 (225)
Q Consensus        91 ~~~~~~~~~~~~~~~~ii~v~~~~~--~~~~~-~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~  152 (225)
                      .+-..++.   .-.++|+|++|.+.  .++-+ +..+++.++..|.    .|+++|+||+|....
T Consensus       238 ~qAi~AL~---hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~----~p~v~V~nK~D~~~~  295 (346)
T COG1084         238 RQAILALR---HLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK----APIVVVINKIDIADE  295 (346)
T ss_pred             HHHHHHHH---HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC----CCeEEEEecccccch
Confidence            22222221   23489999999863  45544 4567788888874    699999999997644

>COG2262 HflX GTPases [General function prediction only]

Probab=99.73  E-value=1.8e-16  Score=129.40  Aligned_cols=169  Identities=22%  Similarity=0.197  Sum_probs=118.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ....+.|+++|-||+|||||+|+|++.....  ...-..|.++....+.+++++.+.|-||-||.+  .-..++...+..
T Consensus       189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~--~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~--~LP~~LV~AFks  264 (411)
T COG2262         189 RSGIPLVALVGYTNAGKSTLFNALTGADVYV--ADQLFATLDPTTRRIELGDGRKVLLTDTVGFIR--DLPHPLVEAFKS  264 (411)
T ss_pred             ccCCCeEEEEeeccccHHHHHHHHhccCeec--cccccccccCceeEEEeCCCceEEEecCccCcc--cCChHHHHHHHH
Confidence            4567999999999999999999999887632  345566777777778886789999999999984  334556666666


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEEGA-AIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      .+... ..+|+++.|+|+.++.-....+ ..+.|.++ +- ...|+++|+||+|.+.+.  ..           +..+-.
T Consensus       265 TLEE~-~~aDlllhVVDaSdp~~~~~~~~v~~vL~el-~~-~~~p~i~v~NKiD~~~~~--~~-----------~~~~~~  328 (411)
T COG2262         265 TLEEV-KEADLLLHVVDASDPEILEKLEAVEDVLAEI-GA-DEIPIILVLNKIDLLEDE--EI-----------LAELER  328 (411)
T ss_pred             HHHHh-hcCCEEEEEeecCChhHHHHHHHHHHHHHHc-CC-CCCCEEEEEecccccCch--hh-----------hhhhhh
Confidence            55443 3789999999998653322222 33444443 22 237999999999988764  10           111111


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ..       .+..+.||.++.+++.|++.|.+.+...
T Consensus       329 ~~-------~~~v~iSA~~~~gl~~L~~~i~~~l~~~  358 (411)
T COG2262         329 GS-------PNPVFISAKTGEGLDLLRERIIELLSGL  358 (411)
T ss_pred             cC-------CCeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence            11       1344567778899999999999988754

>cd00154 Rab Rab family

Probab=99.73  E-value=5.9e-16  Score=113.60  Aligned_cols=156  Identities=17%  Similarity=0.153  Sum_probs=91.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      ++|+++|.+|+|||||+|++++.......  .+..+.......+..+ ....+.+||+||...           +.....
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----------~~~~~~   67 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENY--KSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER-----------FRSITP   67 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCcc--CCceeeeeEEEEEEECCEEEEEEEEecCChHH-----------HHHHHH
Confidence            47999999999999999999988764331  1122222222233331 235789999999632           222333


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      .....+|++++|+|+.++-+... ..++..+.....  ...|+++++||+|...+.....++         .+.+...++
T Consensus        68 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~---------~~~~~~~~~  136 (159)
T cd00154          68 SYYRGAHGAILVYDITNRESFENLDKWLKELKEYAP--ENIPIILVGNKIDLEDQRQVSTEE---------AQQFAKENG  136 (159)
T ss_pred             HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEcccccccccccHHH---------HHHHHHHcC
Confidence            44567899999999974221111 223333333221  237999999999986232112111         334444444


Q ss_pred             CcEEEeeCCCccccccHHHHHHHHHHHH
Q 036158          178 NRCVLFDNKTKDTAKRTEQVGKLLSLVN  205 (225)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~  205 (225)
                      ..+...+      +..+.++++++..|.
T Consensus       137 ~~~~~~s------a~~~~~i~~~~~~i~  158 (159)
T cd00154         137 LLFFETS------AKTGENVEELFQSLA  158 (159)
T ss_pred             CeEEEEe------cCCCCCHHHHHHHHh
Confidence            4444333      344578899888774

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.73  E-value=2.4e-15  Score=111.59  Aligned_cols=159  Identities=13%  Similarity=0.071  Sum_probs=91.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCc-cccccCCCCCceeEEEEEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKR-AFKSKAGSSGVTKTCEMQRTMLK--DGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~-~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ++|+++|.+|+|||||++++.... .+... ..+............+.  ....+.+|||||..           .+...
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-----------~~~~~   68 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKN-YLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQE-----------LYSDM   68 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcc-CCCceEEEEEEEEEEeCCCCEEEEEEEECCCHH-----------HHHHH
Confidence            479999999999999999998542 22221 11121122222223331  33589999999942           22223


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      +......+|++++|+|.++..+... ..+++.+...   ....|+++|.||+|..+..  ......       .+.+...
T Consensus        69 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~~--~~~~~~-------~~~~~~~  136 (164)
T cd04101          69 VSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTA---SKHMPGVLVGNKMDLADKA--EVTDAQ-------AQAFAQA  136 (164)
T ss_pred             HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHh---CCCCCEEEEEECccccccc--CCCHHH-------HHHHHHH
Confidence            3345568899999999974322221 2233333332   2347999999999975442  111110       1222222


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                      .+..+      ...|+.++.+++++++.+.++.
T Consensus       137 ~~~~~------~~~Sa~~~~gi~~l~~~l~~~~  163 (164)
T cd04101         137 NQLKF------FKTSALRGVGYEEPFESLARAF  163 (164)
T ss_pred             cCCeE------EEEeCCCCCChHHHHHHHHHHh
Confidence            23222      2345667799999999987754

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01862 Rab7 Rab7 subfamily

Probab=99.73  E-value=1e-15  Score=114.36  Aligned_cols=163  Identities=14%  Similarity=0.094  Sum_probs=95.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      ++|+++|++|+|||||+|++++.......  .+..+.......+.+ ++.  .+.+|||||....           ....
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~-----------~~~~   66 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQY--KATIGADFLTKEVTV-DDKLVTLQIWDTAGQERF-----------QSLG   66 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCc--CCccceEEEEEEEEE-CCEEEEEEEEeCCChHHH-----------HhHH
Confidence            47999999999999999999987642221  112222222233444 333  5679999996422           2222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEEG-AAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~~-~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      ......+|++|+++|+.++.+.... .+...+......  ....|+++|.||+|...+.....++         ...+.+
T Consensus        67 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~~  137 (172)
T cd01862          67 VAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKK---------AQQWCQ  137 (172)
T ss_pred             HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHH---------HHHHHH
Confidence            3455678999999999744322221 122222222211  1247999999999987432111221         233444


Q ss_pred             HcC-CcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          175 LCD-NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       175 ~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ..+ ..++      ..|+.++.+++++++.+.+.+.+.
T Consensus       138 ~~~~~~~~------~~Sa~~~~gv~~l~~~i~~~~~~~  169 (172)
T cd01862         138 SNGNIPYF------ETSAKEAINVEQAFETIARKALEQ  169 (172)
T ss_pred             HcCCceEE------EEECCCCCCHHHHHHHHHHHHHhc
Confidence            444 2222      344556789999999998766554

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.72  E-value=1e-15  Score=114.57  Aligned_cols=164  Identities=16%  Similarity=0.110  Sum_probs=94.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .++|+++|++|+|||||++++++......  ..+..........+.+ ++  ..+.+|||||..++.       .   ..
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-------~---~~   68 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPER--TEATIGVDFRERTVEI-DGERIKVQLWDTAGQERFR-------K---SM   68 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCc--cccceeEEEEEEEEEE-CCeEEEEEEEeCCChHHHH-------H---hh
Confidence            37899999999999999999987653211  1122222233334444 33  478999999954221       1   12


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEG-AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      +..+...+|++++|+|++++.+.... .++..+.... .....|+++|.||+|+....... .+.        ..++.+.
T Consensus        69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~-~~~--------~~~~~~~  138 (170)
T cd04115          69 VQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHS-LPNEVPRILVGNKCDLREQIQVP-TDL--------AQRFADA  138 (170)
T ss_pred             HHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhc-CCCCCCEEEEEECccchhhcCCC-HHH--------HHHHHHH
Confidence            33456788999999999754333322 2233333322 11347999999999976443111 111        2334444


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                      .+..++..+....   ....++++++..+.+.+
T Consensus       139 ~~~~~~e~Sa~~~---~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         139 HSMPLFETSAKDP---SENDHVEAIFMTLAHKL  168 (170)
T ss_pred             cCCcEEEEeccCC---cCCCCHHHHHHHHHHHh
Confidence            4444433333221   12578888888776544

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04175 Rap1 Rap1 subgroup

Probab=99.72  E-value=5.8e-16  Score=115.04  Aligned_cols=159  Identities=16%  Similarity=0.137  Sum_probs=94.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      +.+|+++|.+|+|||||++++...... ..  ..+++.......+.+ ++  ..+.+|||||....           ...
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~-~~--~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~   65 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFV-EK--YDPTIEDSYRKQVEV-DGQQCMLEILDTAGTEQF-----------TAM   65 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCC-cc--cCCcchheEEEEEEE-CCEEEEEEEEECCCcccc-----------hhH
Confidence            368999999999999999999855421 11  122222222233444 33  35779999997533           122


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      ...++..+|++++|+|.++..+... ..++..+.... .....|+++|.||+|+........++         ..++.+.
T Consensus        66 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~  135 (164)
T cd04175          66 RDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVK-DTEDVPMILVGNKCDLEDERVVGKEQ---------GQNLARQ  135 (164)
T ss_pred             HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECCcchhccEEcHHH---------HHHHHHH
Confidence            2234567799999999874332222 22333333321 12347999999999976542111111         2333344


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                      .+.++      ...|+.++.++++++..+.+.+
T Consensus       136 ~~~~~------~~~Sa~~~~~v~~~~~~l~~~l  162 (164)
T cd04175         136 WGCAF------LETSAKAKINVNEIFYDLVRQI  162 (164)
T ss_pred             hCCEE------EEeeCCCCCCHHHHHHHHHHHh
Confidence            44333      2445567799999999987654

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.72  E-value=6.6e-16  Score=115.18  Aligned_cols=156  Identities=17%  Similarity=0.098  Sum_probs=93.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee---CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK---DGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ++|+++|.+|+|||||+++++.......    ...|.........+.   ....+.+|||||.......           
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-----------   65 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGL-----------   65 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCC----CCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccc-----------
Confidence            4799999999999999999986553211    122333333332221   2247899999997643211           


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      .......+|++|+|+|..++.+-.. ..+++.+.....   ..|+++|.||+|+....   ...   +     ..+..+.
T Consensus        66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~~~---~~~---~-----~~~~~~~  131 (166)
T cd00877          66 RDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDRK---VKA---K-----QITFHRK  131 (166)
T ss_pred             cHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhccccc---CCH---H-----HHHHHHH
Confidence            1123457899999999974433222 223344444332   48999999999976321   111   0     1122222


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      .+..++      ..|++++.+++++++.|.+.+.+
T Consensus       132 ~~~~~~------e~Sa~~~~~v~~~f~~l~~~~~~  160 (166)
T cd00877         132 KNLQYY------EISAKSNYNFEKPFLWLARKLLG  160 (166)
T ss_pred             cCCEEE------EEeCCCCCChHHHHHHHHHHHHh
Confidence            222222      44667779999999999877755

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04155 Arl3 Arl3 subfamily

Probab=99.72  E-value=2.3e-16  Score=118.19  Aligned_cols=159  Identities=16%  Similarity=0.109  Sum_probs=94.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .+.++|+++|++|+|||||+++|.+......     ..|.......+.+ .+..+.+|||||...           +...
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~-----~~t~g~~~~~i~~-~~~~~~~~D~~G~~~-----------~~~~   74 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDISHI-----TPTQGFNIKTVQS-DGFKLNVWDIGGQRA-----------IRPY   74 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCCccc-----CCCCCcceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence            4579999999999999999999998753211     1222233344555 678899999999642           2233


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      +..+...+|++++|+|+....+.  .....++......  ....|+++++||+|.....  ..+++...     + .+. 
T Consensus        75 ~~~~~~~~~~ii~v~D~~~~~~~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~i~~~-----l-~~~-  143 (173)
T cd04155          75 WRNYFENTDCLIYVIDSADKKRL--EEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEEIAEA-----L-NLH-  143 (173)
T ss_pred             HHHHhcCCCEEEEEEeCCCHHHH--HHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHHHHHH-----c-CCc-
Confidence            33455678999999998732111  1112222222111  1247999999999976542  23333222     0 000 


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNS  206 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~  206 (225)
                      ....+...   ....|+.++.++++++++|.+
T Consensus       144 ~~~~~~~~---~~~~Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         144 DLRDRTWH---IQACSAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             ccCCCeEE---EEEeECCCCCCHHHHHHHHhc
Confidence            00111111   124577888999999998853

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04125 RabA_like RabA-like subfamily

Probab=99.72  E-value=1e-15  Score=116.44  Aligned_cols=161  Identities=17%  Similarity=0.174  Sum_probs=95.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      ++|+++|.+|+|||||++++.+......  ..+..+.......+.+ ++  ..+.+|||||....           ....
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~g~~~~-----------~~~~   66 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSES--TKSTIGVDFKIKTVYI-ENKIIKLQIWDTNGQERF-----------RSLN   66 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHHH-----------HhhH
Confidence            4799999999999999999997764221  1222222233333444 33  36789999995422           2233


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      ......+|++|+|+|.+++.+-.. ..++..+......  ..|++++.||.|..+......++         .+.+.+..
T Consensus        67 ~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~--~~~~ivv~nK~Dl~~~~~v~~~~---------~~~~~~~~  135 (188)
T cd04125          67 NSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARE--NVIKVIVANKSDLVNNKVVDSNI---------AKSFCDSL  135 (188)
T ss_pred             HHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECCCCcccccCCHHH---------HHHHHHHc
Confidence            345668899999999974422222 1233333333222  36899999999976443111111         12233333


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      +..++      ..|+.++.+++++++.+.+.+..+
T Consensus       136 ~~~~~------evSa~~~~~i~~~f~~l~~~~~~~  164 (188)
T cd04125         136 NIPFF------ETSAKQSINVEEAFILLVKLIIKR  164 (188)
T ss_pred             CCeEE------EEeCCCCCCHHHHHHHHHHHHHHH
Confidence            33333      334556689999999888777654

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.72  E-value=1.2e-16  Score=121.23  Aligned_cols=163  Identities=9%  Similarity=0.049  Sum_probs=96.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ....+|+++|.+|+|||||+|++.+......     .+|.......+.+ .+..+.++||||...           ....
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~~~D~~G~~~-----------~~~~   77 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH-----QPTQHPTSEELAI-GNIKFTTFDLGGHQQ-----------ARRL   77 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccccceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence            4458999999999999999999998754221     1233333344555 677899999999642           1223


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      +..++..+|++++|+|+.++-+  .......+.+.+..  ....|+++|+||+|.....  ..++.... +.  +.....
T Consensus        78 ~~~~~~~ad~ii~vvD~~~~~~--~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~--~~~~i~~~-l~--l~~~~~  150 (184)
T smart00178       78 WKDYFPEVNGIVYLVDAYDKER--FAESKRELDALLSDEELATVPFLILGNKIDAPYAA--SEDELRYA-LG--LTNTTG  150 (184)
T ss_pred             HHHHhCCCCEEEEEEECCcHHH--HHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCC--CHHHHHHH-cC--CCcccc
Confidence            3456678999999999863311  11122233333221  1247999999999975332  22222211 00  000000


Q ss_pred             H---cCCcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158          175 L---CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNS  206 (225)
Q Consensus       175 ~---~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~  206 (225)
                      .   .+.+..   ...+.|+.++.++++++++|.+
T Consensus       151 ~~~~~~~~~~---~i~~~Sa~~~~g~~~~~~wl~~  182 (184)
T smart00178      151 SKGKVGVRPL---EVFMCSVVRRMGYGEGFKWLSQ  182 (184)
T ss_pred             cccccCCcee---EEEEeecccCCChHHHHHHHHh
Confidence            0   011211   2345667778999999999854

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PLN03118 Rab family protein; Provisional

Probab=99.72  E-value=1.5e-15  Score=117.70  Aligned_cols=170  Identities=14%  Similarity=0.105  Sum_probs=100.2

Q ss_pred             CCCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHH
Q 036158           13 TSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKD-GQVVNVIDTPGLFDSSADSEFVSK   91 (225)
Q Consensus        13 ~~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~   91 (225)
                      .++....++|+++|.+|+|||||+++|++.....   ..+..+.......+.+.+ ...+.||||||...+         
T Consensus         8 ~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---------   75 (211)
T PLN03118          8 SSGYDLSFKILLIGDSGVGKSSLLVSFISSSVED---LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERF---------   75 (211)
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHHhCCCCC---cCCCceeEEEEEEEEECCEEEEEEEEECCCchhh---------
Confidence            3444567899999999999999999999876421   122222233333444422 247899999996543         


Q ss_pred             HHHHHHhhcCCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHH
Q 036158           92 EIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGA-AIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK  170 (225)
Q Consensus        92 ~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~  170 (225)
                        ......++..+|++|+|+|..++.+..... .+......+......|+++|.||+|+........++         ..
T Consensus        76 --~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~---------~~  144 (211)
T PLN03118         76 --RTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREE---------GM  144 (211)
T ss_pred             --HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHH---------HH
Confidence              122233456789999999997443222221 121122222222236889999999976443111111         22


Q ss_pred             HHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          171 EILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      .+....+..+      ...|+..+.+++++++.|.+.+.+.
T Consensus       145 ~~~~~~~~~~------~e~SAk~~~~v~~l~~~l~~~~~~~  179 (211)
T PLN03118        145 ALAKEHGCLF------LECSAKTRENVEQCFEELALKIMEV  179 (211)
T ss_pred             HHHHHcCCEE------EEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            2333333222      2345566789999999999877654

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.72  E-value=5.3e-16  Score=115.83  Aligned_cols=157  Identities=15%  Similarity=0.114  Sum_probs=93.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT  100 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (225)
                      +|+++|.+|+|||||+|++.+...  .   ....|.......+.. .+..+.++||||...           +...+..+
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~~~--~---~~~~t~g~~~~~~~~-~~~~~~i~D~~G~~~-----------~~~~~~~~   63 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEIP--K---KVAPTVGFTPTKLRL-DKYEVCIFDLGGGAN-----------FRGIWVNY   63 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCC--c---cccCcccceEEEEEE-CCEEEEEEECCCcHH-----------HHHHHHHH
Confidence            489999999999999999997621  1   112222233344555 678899999999532           23334456


Q ss_pred             CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158          101 KDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN  178 (225)
Q Consensus       101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (225)
                      +..+|++++|+|+.+..+.  .....++.......  ...|+++|.||.|.....  ...+.....   .+..+.+..+.
T Consensus        64 ~~~a~~ii~V~D~s~~~s~--~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~--~~~~i~~~~---~l~~~~~~~~~  136 (167)
T cd04161          64 YAEAHGLVFVVDSSDDDRV--QEVKEILRELLQHPRVSGKPILVLANKQDKKNAL--LGADVIEYL---SLEKLVNENKS  136 (167)
T ss_pred             HcCCCEEEEEEECCchhHH--HHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC--CHHHHHHhc---CcccccCCCCc
Confidence            6788999999999743221  12233344333221  247999999999976543  333333320   01222222222


Q ss_pred             cEEEeeCCCccccccH------HHHHHHHHHHH
Q 036158          179 RCVLFDNKTKDTAKRT------EQVGKLLSLVN  205 (225)
Q Consensus       179 ~~~~~~~~~~~~~~~~------~~v~~l~~~i~  205 (225)
                      ++..+    .+||.++      .++.+-+++|.
T Consensus       137 ~~~~~----~~Sa~~g~~~~~~~g~~~~~~wl~  165 (167)
T cd04161         137 LCHIE----PCSAIEGLGKKIDPSIVEGLRWLL  165 (167)
T ss_pred             eEEEE----EeEceeCCCCccccCHHHHHHHHh
Confidence            33333    2344444      78999998885

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.72  E-value=2.7e-16  Score=126.61  Aligned_cols=156  Identities=22%  Similarity=0.327  Sum_probs=115.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCcccccc------CCCCCceeEEEEEEEEeeCCc---eEEEEeCCCCCCCCCCc
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSK------AGSSGVTKTCEMQRTMLKDGQ---VVNVIDTPGLFDSSADS   86 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~------~~~~~~t~~~~~~~~~~~~~~---~~~liDtPG~~~~~~~~   86 (225)
                      ..-.++|+++|++|+|||||+|+|++.......      ......|.....+...+.++.   .++++|||||+|+-.+ 
T Consensus        20 ~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN-   98 (373)
T COG5019          20 KGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN-   98 (373)
T ss_pred             cCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc-
Confidence            355789999999999999999999988543221      111235555666665553332   7999999999997544 


Q ss_pred             HHHHHHHHHHHh------------------hcCCCccEEEEEEeC-CCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 036158           87 EFVSKEIVKCIG------------------MTKDGIHAVLVVFSV-RNRFSEEEGAAIHILESLFGKKISDYMIVVFTGG  147 (225)
Q Consensus        87 ~~~~~~~~~~~~------------------~~~~~~~~ii~v~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~  147 (225)
                      ..-|+-+..++.                  ....++|++||.+.. .+.+...|.+.|+.|.+.      .+++.|+.|+
T Consensus        99 s~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~------vNlIPVI~Ka  172 (373)
T COG5019          99 SKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR------VNLIPVIAKA  172 (373)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc------cCeeeeeecc
Confidence            444444444442                  234678999999975 468999999999888875      7999999999


Q ss_pred             CCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEE-eeC
Q 036158          148 DELEDNDETLEDYLGRECPKPLKEILQLCDNRCVL-FDN  185 (225)
Q Consensus       148 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  185 (225)
                      |.+...  .+..+.+.     +.+.++.++++++. |++
T Consensus       173 D~lT~~--El~~~K~~-----I~~~i~~~nI~vf~pyd~  204 (373)
T COG5019         173 DTLTDD--ELAEFKER-----IREDLEQYNIPVFDPYDP  204 (373)
T ss_pred             ccCCHH--HHHHHHHH-----HHHHHHHhCCceeCCCCc
Confidence            988775  77777777     89999999998773 444

>cd00880 Era_like Era (E

Probab=99.72  E-value=7.7e-16  Score=112.82  Aligned_cols=162  Identities=23%  Similarity=0.203  Sum_probs=98.0

Q ss_pred             EEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCC
Q 036158           24 LVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDG  103 (225)
Q Consensus        24 v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~  103 (225)
                      ++|++|+|||||+|+|++....... ...+.|.........+.....+.+|||||+.+...........+.    .....
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~----~~~~~   75 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVS-PVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELAR----RVLER   75 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccC-CCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHH----HHHHh
Confidence            5899999999999999988754332 344455555555555533778999999999876543332222222    23446


Q ss_pred             ccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEe
Q 036158          104 IHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLF  183 (225)
Q Consensus       104 ~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (225)
                      +|++++|+++..........+......     ...|+++|+||+|.....  ........    .........+.+++. 
T Consensus        76 ~d~il~v~~~~~~~~~~~~~~~~~~~~-----~~~~~ivv~nK~D~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~-  143 (163)
T cd00880          76 ADLILFVVDADLRADEEEEKLLELLRE-----RGKPVLLVLNKIDLLPEE--EEEELLEL----RLLILLLLLGLPVIA-  143 (163)
T ss_pred             CCEEEEEEeCCCCCCHHHHHHHHHHHh-----cCCeEEEEEEccccCChh--hHHHHHHH----HHhhcccccCCceEE-
Confidence            799999999985555544442222222     247999999999987653  33322110    001111111222322 


Q ss_pred             eCCCccccccHHHHHHHHHHHHHH
Q 036158          184 DNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       184 ~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                           .++.++.+++++++.+.+.
T Consensus       144 -----~sa~~~~~v~~l~~~l~~~  162 (163)
T cd00880         144 -----VSALTGEGIDELREALIEA  162 (163)
T ss_pred             -----EeeeccCCHHHHHHHHHhh
Confidence                 2344557899999888654

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.71  E-value=3.9e-16  Score=115.63  Aligned_cols=155  Identities=14%  Similarity=0.110  Sum_probs=91.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (225)
                      ++|+++|.+|+|||||++++...... .  ..  +|.......+.. ....+.+|||||...           +...+..
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~--~~--pt~g~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~~   63 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-T--TI--PTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRH   63 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-c--cC--CCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHH
Confidence            47999999999999999999654432 1  11  222223334454 677899999999742           2233345


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158          100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus       100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      ++.++|++|+|+|++++.+-  ....+++.+.....  ...|++++.||.|+....  ..++....     + . +....
T Consensus        64 ~~~~ad~~i~v~D~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~-----~-~-~~~~~  132 (159)
T cd04150          64 YFQNTQGLIFVVDSNDRERI--GEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SAAEVTDK-----L-G-LHSLR  132 (159)
T ss_pred             HhcCCCEEEEEEeCCCHHHH--HHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CHHHHHHH-----h-C-ccccC
Confidence            67788999999999743221  12223333333221  237999999999975432  22222111     0 0 00001


Q ss_pred             CcEEEeeCCCccccccHHHHHHHHHHHH
Q 036158          178 NRCVLFDNKTKDTAKRTEQVGKLLSLVN  205 (225)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~  205 (225)
                      .+...   ..+.||+++.++++++++|.
T Consensus       133 ~~~~~---~~~~Sak~g~gv~~~~~~l~  157 (159)
T cd04150         133 NRNWY---IQATCATSGDGLYEGLDWLS  157 (159)
T ss_pred             CCCEE---EEEeeCCCCCCHHHHHHHHh
Confidence            11111   12456778899999998874

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>CHL00071 tufA elongation factor Tu

Probab=99.71  E-value=4e-16  Score=131.99  Aligned_cols=142  Identities=18%  Similarity=0.218  Sum_probs=97.1

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhCCcccc--------------ccCCCCCceeEEEEEEEEeeCCceEEEEeCCCC
Q 036158           14 SPSNGERNLVLVGRTGNGKSATANSILGKRAFK--------------SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL   79 (225)
Q Consensus        14 ~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (225)
                      .+.++.++|+++|++++|||||+|+|++.....              ......+.|.......+.+ ++..+.|+||||+
T Consensus         7 ~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~~~iDtPGh   85 (409)
T CHL00071          7 ERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET-ENRHYAHVDCPGH   85 (409)
T ss_pred             cCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc-CCeEEEEEECCCh
Confidence            346788999999999999999999999753211              1112356677766666666 6778999999996


Q ss_pred             CCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccccc-EEEEEecCCCCCCCcccHH
Q 036158           80 FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDY-MIVVFTGGDELEDNDETLE  158 (225)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~vv~~k~D~~~~~~~~~~  158 (225)
                      .++       ...+    ......+|++++|+|+.......+.+.+..+...     ..| +++++||+|..... ...+
T Consensus        86 ~~~-------~~~~----~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~-----g~~~iIvvvNK~D~~~~~-~~~~  148 (409)
T CHL00071         86 ADY-------VKNM----ITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV-----GVPNIVVFLNKEDQVDDE-ELLE  148 (409)
T ss_pred             HHH-------HHHH----HHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc-----CCCEEEEEEEccCCCCHH-HHHH
Confidence            421       2222    2334467999999999877877787888776653     245 77899999986432 2233


Q ss_pred             HHhhhcCCchHHHHHHHcCC
Q 036158          159 DYLGRECPKPLKEILQLCDN  178 (225)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~  178 (225)
                      ....+     +.+.++.++.
T Consensus       149 ~~~~~-----l~~~l~~~~~  163 (409)
T CHL00071        149 LVELE-----VRELLSKYDF  163 (409)
T ss_pred             HHHHH-----HHHHHHHhCC
Confidence            33333     6777776653

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.71  E-value=6.2e-16  Score=117.42  Aligned_cols=164  Identities=15%  Similarity=0.129  Sum_probs=96.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEE-EEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCE-MQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ++|+++|.+|+|||||++++.+......   . ..|.... ...+..+++  ..+.+|||||....           ...
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~---~-~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~-----------~~~   65 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEE---Y-VPTVFENYVTNIQGPNGKIIELALWDTAGQEEY-----------DRL   65 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCC---C-CCeeeeeeEEEEEecCCcEEEEEEEECCCchhH-----------HHH
Confidence            4799999999999999999997764211   1 1222222 222333212  36899999995422           222


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      .......+|++|+|+|.+++.+-++.  .++..+...   ....|+++|.||+|+....  .......   ....+++..
T Consensus        66 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~--~~~~~v~---~~~~~~~~~  137 (187)
T cd04132          66 RPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF---CPGTPIMLVGLKTDLRKDK--NLDRKVT---PAQAESVAK  137 (187)
T ss_pred             HHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh---CCCCCEEEEEeChhhhhCc--cccCCcC---HHHHHHHHH
Confidence            23356788999999999754333222  122333322   1247999999999975432  1111000   111344444


Q ss_pred             HcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          175 LCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       175 ~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                      ..+. .+      ...|+..+.++++++..+.+.+....
T Consensus       138 ~~~~~~~------~e~Sa~~~~~v~~~f~~l~~~~~~~~  170 (187)
T cd04132         138 KQGAFAY------LECSAKTMENVEEVFDTAIEEALKKE  170 (187)
T ss_pred             HcCCcEE------EEccCCCCCCHHHHHHHHHHHHHhhh
Confidence            4443 22      24455677899999999987776653

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.71  E-value=7.2e-16  Score=120.03  Aligned_cols=160  Identities=14%  Similarity=0.040  Sum_probs=97.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEE--EEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEM--QRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEI   93 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (225)
                      ...++|+++|.+|+|||||+++++.......    ...|..+..  ..+... ....+.+|||||...+           
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~----~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------   75 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-----------   75 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCc----cCCccceeEEEEEEEECCeEEEEEEEECCCchhh-----------
Confidence            6678999999999999999999876553211    122222222  223221 2348999999997543           


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI  172 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (225)
                      ......++..+|++|+|+|.+++.+-.. ..+++.+.+..   ...|+++|.||+|+....  ...+   .     + .+
T Consensus        76 ~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~~~~--v~~~---~-----~-~~  141 (219)
T PLN03071         76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQ--VKAK---Q-----V-TF  141 (219)
T ss_pred             hhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEEchhhhhcc--CCHH---H-----H-HH
Confidence            1222345668899999999985433222 22334444332   247999999999975321  1111   1     1 22


Q ss_pred             HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          173 LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      .+..+.+|  |    ..||+++.++++++++|.+.+.+.
T Consensus       142 ~~~~~~~~--~----e~SAk~~~~i~~~f~~l~~~~~~~  174 (219)
T PLN03071        142 HRKKNLQY--Y----EISAKSNYNFEKPFLYLARKLAGD  174 (219)
T ss_pred             HHhcCCEE--E----EcCCCCCCCHHHHHHHHHHHHHcC
Confidence            22233332  2    346677899999999998777654

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.71  E-value=3.5e-16  Score=137.73  Aligned_cols=167  Identities=17%  Similarity=0.230  Sum_probs=114.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCcccc-ccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFK-SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      +.|+++|+.++|||||+++|+|..... ......+.|.......+..+++..+.||||||+.+           +...+.
T Consensus         1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~-----------fi~~m~   69 (614)
T PRK10512          1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEK-----------FLSNML   69 (614)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHH-----------HHHHHH
Confidence            358999999999999999999854211 12234577877766666665677899999999742           222222


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN  178 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (225)
                      .....+|++++|++++......+.+.+..+... +   .++++||+||+|+....  .++....+     +++.+...+.
T Consensus        70 ~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~l-g---i~~iIVVlNKiDlv~~~--~~~~v~~e-----i~~~l~~~~~  138 (614)
T PRK10512         70 AGVGGIDHALLVVACDDGVMAQTREHLAILQLT-G---NPMLTVALTKADRVDEA--RIAEVRRQ-----VKAVLREYGF  138 (614)
T ss_pred             HHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHc-C---CCeEEEEEECCccCCHH--HHHHHHHH-----HHHHHHhcCC
Confidence            345578999999999877777787887766542 2   14568999999986432  44444444     5666655443


Q ss_pred             cEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          179 RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ..   ....+.|+.++.++++|++.|.++....
T Consensus       139 ~~---~~ii~VSA~tG~gI~~L~~~L~~~~~~~  168 (614)
T PRK10512        139 AE---AKLFVTAATEGRGIDALREHLLQLPERE  168 (614)
T ss_pred             CC---CcEEEEeCCCCCCCHHHHHHHHHhhccc
Confidence            21   1223456677799999999998876553

>cd00879 Sar1 Sar1 subfamily

Probab=99.71  E-value=2.8e-16  Score=119.61  Aligned_cols=165  Identities=9%  Similarity=0.005  Sum_probs=97.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ....+|+++|++|+|||||++++.+.....     ...|.......+.+ ++..+.++||||....           ...
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~-----~~~T~~~~~~~i~~-~~~~~~l~D~~G~~~~-----------~~~   79 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQ-----HVPTLHPTSEELTI-GNIKFKTFDLGGHEQA-----------RRL   79 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCcc-----cCCccCcceEEEEE-CCEEEEEEECCCCHHH-----------HHH
Confidence            456899999999999999999999866421     12233333445566 6788999999995421           222


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCc-hH----
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPK-PL----  169 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~-~~----  169 (225)
                      +..+...+|++++|+|+.+.-+-  .....++.+.+..  ....|++++.||+|.....  ..++..+. ... ..    
T Consensus        80 ~~~~~~~ad~iilV~D~~~~~s~--~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~--~~~~~~~~-~~~~~~~~~~  154 (190)
T cd00879          80 WKDYFPEVDGIVFLVDAADPERF--QESKEELDSLLSDEELANVPFLILGNKIDLPGAV--SEEELRQA-LGLYGTTTGK  154 (190)
T ss_pred             HHHHhccCCEEEEEEECCcHHHH--HHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCc--CHHHHHHH-hCcccccccc
Confidence            33455678999999999733111  1222334433322  1347999999999975432  22222111 000 00    


Q ss_pred             -HHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          170 -KEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       170 -~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                       ..+.......+.    ...+|+.++.++++++++|.+.
T Consensus       155 ~~~~~~~~~~~~~----~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         155 GVSLKVSGIRPIE----VFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             cccccccCceeEE----EEEeEecCCCChHHHHHHHHhh
Confidence             000001111111    2356778889999999999764

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04151 Arl1 Arl1 subfamily

Probab=99.71  E-value=2.9e-16  Score=116.04  Aligned_cols=155  Identities=13%  Similarity=0.076  Sum_probs=91.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT  100 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (225)
                      +|+++|.+|+|||||++++........     ..|.......+.+ .+..+.+|||||...+           ...+..+
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~-----------~~~~~~~   63 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVTT-----IPTIGFNVETVTY-KNLKFQVWDLGGQTSI-----------RPYWRCY   63 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcCc-----CCccCcCeEEEEE-CCEEEEEEECCCCHHH-----------HHHHHHH
Confidence            589999999999999999976553211     1233333344555 6678999999997532           2233345


Q ss_pred             CCCccEEEEEEeCCCCCCHH--HHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158          101 KDGIHAVLVVFSVRNRFSEE--EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN  178 (225)
Q Consensus       101 ~~~~~~ii~v~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (225)
                      ...+|++|+|+|++++.+..  ...+...++..  .....|+++|+||+|.....  ...+....     +.  ......
T Consensus        64 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~piiiv~nK~Dl~~~~--~~~~i~~~-----~~--~~~~~~  132 (158)
T cd04151          64 YSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEE--ELKGAVLLVFANKQDMPGAL--SEAEISEK-----LG--LSELKD  132 (158)
T ss_pred             hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhch--hhcCCcEEEEEeCCCCCCCC--CHHHHHHH-----hC--ccccCC
Confidence            56789999999997432111  12222222221  11247999999999976432  22222111     00  000011


Q ss_pred             cEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158          179 RCVLFDNKTKDTAKRTEQVGKLLSLVNS  206 (225)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~v~~l~~~i~~  206 (225)
                      ...   ...+.|+.++.+++++++.+.+
T Consensus       133 ~~~---~~~~~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151         133 RTW---SIFKTSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             CcE---EEEEeeccCCCCHHHHHHHHhc
Confidence            101   1345677788999999998853

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.71  E-value=4.5e-16  Score=136.56  Aligned_cols=168  Identities=20%  Similarity=0.232  Sum_probs=113.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCcccc-ccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFK-SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      ++|+++|++++|||||+|+|++..... ......+.|.+.....+.+ ++..+.+|||||+.+           +...+.
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~-~~~~v~~iDtPGhe~-----------f~~~~~   68 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPL-PDYRLGFIDVPGHEK-----------FISNAI   68 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEe-CCEEEEEEECCCHHH-----------HHHHHH
Confidence            469999999999999999999854211 1123456777777777777 668999999999642           233333


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN  178 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (225)
                      ....++|++++|+|++++......+.+..+.. .+.   +++++|+||+|.....  .++....+     +++++...+.
T Consensus        69 ~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~-lgi---~~iIVVlNK~Dlv~~~--~~~~~~~e-----i~~~l~~~~~  137 (581)
T TIGR00475        69 AGGGGIDAALLVVDADEGVMTQTGEHLAVLDL-LGI---PHTIVVITKADRVNEE--EIKRTEMF-----MKQILNSYIF  137 (581)
T ss_pred             hhhccCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEECCCCCCHH--HHHHHHHH-----HHHHHHHhCC
Confidence            44567899999999987666666666665543 221   3499999999986432  33333333     5566655432


Q ss_pred             cEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          179 RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                      .-  .....+.|+.++.+++++.+.+.++.....
T Consensus       138 ~~--~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~  169 (581)
T TIGR00475       138 LK--NAKIFKTSAKTGQGIGELKKELKNLLESLD  169 (581)
T ss_pred             CC--CCcEEEEeCCCCCCchhHHHHHHHHHHhCC
Confidence            10  011234466777899999999988877643

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.71  E-value=5.4e-16  Score=121.70  Aligned_cols=87  Identities=21%  Similarity=0.296  Sum_probs=63.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT  100 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (225)
                      +|+++|.+|+|||||+|+|++....  ....+.+|..+....+.+ ++..+.+|||||+.+...........+    ...
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~--v~~~~~tT~~~~~g~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~----l~~   74 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSE--VAAYEFTTLTCVPGVLEY-KGAKIQLLDLPGIIEGAADGKGRGRQV----IAV   74 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCcc--ccCCCCccccceEEEEEE-CCeEEEEEECCCcccccccchhHHHHH----HHh
Confidence            6899999999999999999987642  223456666676666677 788999999999876543222222222    234


Q ss_pred             CCCccEEEEEEeCC
Q 036158          101 KDGIHAVLVVFSVR  114 (225)
Q Consensus       101 ~~~~~~ii~v~~~~  114 (225)
                      ...+|++++|+|+.
T Consensus        75 ~~~ad~il~V~D~t   88 (233)
T cd01896          75 ARTADLILMVLDAT   88 (233)
T ss_pred             hccCCEEEEEecCC
Confidence            66789999999986

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PTZ00369 Ras-like protein; Provisional

Probab=99.71  E-value=1.3e-15  Score=115.91  Aligned_cols=163  Identities=20%  Similarity=0.156  Sum_probs=96.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ..++|+++|.+|+|||||++++.+.......   .++........+.+ ++  ..+.+|||||..++.           .
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~   68 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEY---DPTIEDSYRKQCVI-DEETCLLDILDTAGQEEYS-----------A   68 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCc---CCchhhEEEEEEEE-CCEEEEEEEEeCCCCccch-----------h
Confidence            4589999999999999999999976642221   11111111223333 33  357889999976542           1


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      .+..+...+|++++|+|++++-+-.. ..+++.+...... ...|+++|.||+|..........+         ..+...
T Consensus        69 l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~~~~~i~~~~---------~~~~~~  138 (189)
T PTZ00369         69 MRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDK-DRVPMILVGNKCDLDSERQVSTGE---------GQELAK  138 (189)
T ss_pred             hHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccccccCHHH---------HHHHHH
Confidence            22235567899999999975433222 2333444333221 246899999999965432111111         222333


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ..+.++      ...|+.++.+++++++.+.+.+.+.
T Consensus       139 ~~~~~~------~e~Sak~~~gi~~~~~~l~~~l~~~  169 (189)
T PTZ00369        139 SFGIPF------LETSAKQRVNVDEAFYELVREIRKY  169 (189)
T ss_pred             HhCCEE------EEeeCCCCCCHHHHHHHHHHHHHHH
Confidence            334332      2345566789999999988766554

>cd04111 Rab39 Rab39 subfamily

Probab=99.71  E-value=2.2e-15  Score=116.71  Aligned_cols=164  Identities=18%  Similarity=0.144  Sum_probs=97.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .++|+++|.+|+|||||+|++++......  ..++.+.+.....+.+.++  ..+.+|||||...           +...
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~--~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~   68 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEV--SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER-----------FRSI   68 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCC--CCceeceEEEEEEEEECCCCEEEEEEEeCCcchh-----------HHHH
Confidence            47999999999999999999998764222  1222222332333333223  4789999999542           2222


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      ...++..+|++++|+|.+++-+-.. ..++..+.+.... ...|+++|.||+|+........+ .        ..++.+.
T Consensus        69 ~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~~~~v~~~-~--------~~~~~~~  138 (211)
T cd04111          69 TRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLESQRQVTRE-E--------AEKLAKD  138 (211)
T ss_pred             HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEccccccccccCHH-H--------HHHHHHH
Confidence            2345667899999999974422222 1233333332221 23567889999997653211111 1        2334444


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      .+..++      ..|+.++.+++++++.|.+.+.++
T Consensus       139 ~~~~~~------e~Sak~g~~v~e~f~~l~~~~~~~  168 (211)
T cd04111         139 LGMKYI------ETSARTGDNVEEAFELLTQEIYER  168 (211)
T ss_pred             hCCEEE------EEeCCCCCCHHHHHHHHHHHHHHH
Confidence            453332      345566789999999999877654

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04117 Rab15 Rab15 subfamily

Probab=99.71  E-value=7.6e-16  Score=114.27  Aligned_cols=157  Identities=13%  Similarity=0.135  Sum_probs=93.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      ++|+++|.+|+|||||++.+++......  ..+..........+.. ++  ..+.+|||||....           ....
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~-----------~~~~   66 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSS--HISTIGVDFKMKTIEV-DGIKVRIQIWDTAGQERY-----------QTIT   66 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHhH-----------HhhH
Confidence            3799999999999999999997664221  1122222233334444 33  36889999995422           2223


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      ..+...+|++++|+|++++-+-.. ..+++.+....  ....|+++|.||.|+.+..... .+.        ...+.+..
T Consensus        67 ~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~--~~~~~iilvgnK~Dl~~~~~v~-~~~--------~~~~~~~~  135 (161)
T cd04117          67 KQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYA--PEGVQKILIGNKADEEQKRQVG-DEQ--------GNKLAKEY  135 (161)
T ss_pred             HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECcccccccCCC-HHH--------HHHHHHHc
Confidence            345668899999999975422222 22333333322  1247999999999976443111 111        23334444


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                      +..+      ...|+..+.++++++..|.++
T Consensus       136 ~~~~------~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117         136 GMDF------FETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             CCEE------EEEeCCCCCCHHHHHHHHHhh
Confidence            4333      245566678999999998764

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.70  E-value=1.1e-16  Score=126.19  Aligned_cols=166  Identities=18%  Similarity=0.153  Sum_probs=117.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      ....|+++|.+|+|||||+|+|...++  ....+..+|..++...+.+.+...+++.|.||+...+..+..+.-.+.+.+
T Consensus       195 siadvGLVG~PNAGKSTLL~als~AKp--kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHi  272 (366)
T KOG1489|consen  195 SIADVGLVGFPNAGKSTLLNALSRAKP--KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHI  272 (366)
T ss_pred             eecccceecCCCCcHHHHHHHhhccCC--cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHH
Confidence            346688999999999999999998886  445577888888888887744446999999999999888988888888888


Q ss_pred             hhcCCCccEEEEEEeCCCC--CCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           98 GMTKDGIHAVLVVFSVRNR--FSEEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~--~~~~~--~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                      ..+    ..++||+|....  .++++  ..++..+..+-..-..+|.+||.||+|..+..    ++.        +.++.
T Consensus       273 ER~----~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae----~~~--------l~~L~  336 (366)
T KOG1489|consen  273 ERC----KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE----KNL--------LSSLA  336 (366)
T ss_pred             Hhh----ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH----HHH--------HHHHH
Confidence            777    999999999733  24443  22223333221112448999999999976332    111        34444


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNS  206 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~  206 (225)
                      +..... +    ..+.||..+.++.+|+..+.+
T Consensus       337 ~~lq~~-~----V~pvsA~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  337 KRLQNP-H----VVPVSAKSGEGLEELLNGLRE  364 (366)
T ss_pred             HHcCCC-c----EEEeeeccccchHHHHHHHhh
Confidence            444433 1    123455666888998887754

>PLN03127 Elongation factor Tu; Provisional

Probab=99.70  E-value=6.1e-16  Score=131.69  Aligned_cols=171  Identities=17%  Similarity=0.196  Sum_probs=110.4

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhCC------ccc------c--ccCCCCCceeEEEEEEEEeeCCceEEEEeCCCC
Q 036158           14 SPSNGERNLVLVGRTGNGKSATANSILGK------RAF------K--SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL   79 (225)
Q Consensus        14 ~~~~~~~~i~v~G~~g~GKSSlin~l~~~------~~~------~--~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (225)
                      +..+++++|+++|+.++|||||+++|++.      ...      +  .....++.|.+.....++. ++..+.++||||+
T Consensus        56 ~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh  134 (447)
T PLN03127         56 TRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-AKRHYAHVDCPGH  134 (447)
T ss_pred             hcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-CCeEEEEEECCCc
Confidence            33578899999999999999999999733      100      0  1122367788887777776 6778999999998


Q ss_pred             CCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccccc-EEEEEecCCCCCCCcccHH
Q 036158           80 FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDY-MIVVFTGGDELEDNDETLE  158 (225)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~vv~~k~D~~~~~~~~~~  158 (225)
                      .++       ...+..    ....+|++++|+|+.......+.+.+..+...     ..| +++++||+|..+.. ...+
T Consensus       135 ~~f-------~~~~~~----g~~~aD~allVVda~~g~~~qt~e~l~~~~~~-----gip~iIvviNKiDlv~~~-~~~~  197 (447)
T PLN03127        135 ADY-------VKNMIT----GAAQMDGGILVVSAPDGPMPQTKEHILLARQV-----GVPSLVVFLNKVDVVDDE-ELLE  197 (447)
T ss_pred             cch-------HHHHHH----HHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-----CCCeEEEEEEeeccCCHH-HHHH
Confidence            642       222222    22358999999999877777787888777653     256 57889999986432 1222


Q ss_pred             HHhhhcCCchHHHHHHHcCC-----cEEEeeCCCcccccc-------HHHHHHHHHHHHHHHHH
Q 036158          159 DYLGRECPKPLKEILQLCDN-----RCVLFDNKTKDTAKR-------TEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-------~~~v~~l~~~i~~~~~~  210 (225)
                      ....+     +++++..++.     ++...+..   ++.+       ...+.+|++.+.++++.
T Consensus       198 ~i~~~-----i~~~l~~~~~~~~~vpiip~Sa~---sa~~g~n~~~~~~~i~~Ll~~l~~~lp~  253 (447)
T PLN03127        198 LVEME-----LRELLSFYKFPGDEIPIIRGSAL---SALQGTNDEIGKNAILKLMDAVDEYIPE  253 (447)
T ss_pred             HHHHH-----HHHHHHHhCCCCCcceEEEeccc---eeecCCCcccccchHHHHHHHHHHhCCC
Confidence            22223     5666665443     22222211   1111       13478899999887653

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.70  E-value=1.4e-16  Score=117.93  Aligned_cols=147  Identities=18%  Similarity=0.212  Sum_probs=88.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT  100 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (225)
                      +|+++|.+|+|||||+|+|.+.....      ..|..     +.+ ...  .+|||||+....   ....    ..+...
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~~------~~~~~-----v~~-~~~--~~iDtpG~~~~~---~~~~----~~~~~~   61 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTLA------RKTQA-----VEF-NDK--GDIDTPGEYFSH---PRWY----HALITT   61 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCccC------ccceE-----EEE-CCC--CcccCCccccCC---HHHH----HHHHHH
Confidence            79999999999999999999765211      11222     222 222  279999986332   1122    222233


Q ss_pred             CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcE
Q 036158          101 KDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC  180 (225)
Q Consensus       101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (225)
                      ...+|++++|+|++...+....    ++.+..   ...|+++++||+|....   ..+.         +.+.+...+...
T Consensus        62 ~~~ad~il~v~d~~~~~s~~~~----~~~~~~---~~~~ii~v~nK~Dl~~~---~~~~---------~~~~~~~~~~~~  122 (158)
T PRK15467         62 LQDVDMLIYVHGANDPESRLPA----GLLDIG---VSKRQIAVISKTDMPDA---DVAA---------TRKLLLETGFEE  122 (158)
T ss_pred             HhcCCEEEEEEeCCCcccccCH----HHHhcc---CCCCeEEEEEccccCcc---cHHH---------HHHHHHHcCCCC
Confidence            5688999999999744332222    222221   13689999999997432   2221         233444444311


Q ss_pred             EEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          181 VLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       181 ~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                          .....|+.++.++++|++.+.+.+.+.
T Consensus       123 ----p~~~~Sa~~g~gi~~l~~~l~~~~~~~  149 (158)
T PRK15467        123 ----PIFELNSHDPQSVQQLVDYLASLTKQE  149 (158)
T ss_pred             ----CEEEEECCCccCHHHHHHHHHHhchhh
Confidence                222345567799999999999888553

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.70  E-value=5.8e-16  Score=121.70  Aligned_cols=135  Identities=21%  Similarity=0.240  Sum_probs=91.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCcccccc----------------CCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSK----------------AGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA   84 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (225)
                      +|+++|+.|+|||||+++|+........                ....+.|.......+.+ ++..+.+|||||+.++. 
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~-~~~~i~liDTPG~~~f~-   78 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-EDTKVNLIDTPGHMDFI-   78 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE-CCEEEEEEeCCCccchH-
Confidence            5899999999999999999864321110                11234455566677788 78899999999987642 


Q ss_pred             CcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhc
Q 036158           85 DSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRE  164 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~  164 (225)
                            ..+.    .+...+|++++|+|+.+........+++.+.+.     ..|+++++||+|....   ...+.+.  
T Consensus        79 ------~~~~----~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~-----~~P~iivvNK~D~~~a---~~~~~~~--  138 (237)
T cd04168          79 ------AEVE----RSLSVLDGAILVISAVEGVQAQTRILWRLLRKL-----NIPTIIFVNKIDRAGA---DLEKVYQ--  138 (237)
T ss_pred             ------HHHH----HHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECccccCC---CHHHHHH--
Confidence                  1222    233456999999999877776666666666542     3789999999997654   3344433  


Q ss_pred             CCchHHHHHHHcCCcEEEe
Q 036158          165 CPKPLKEILQLCDNRCVLF  183 (225)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~  183 (225)
                            ++.+.++.+..++
T Consensus       139 ------~i~~~~~~~~~~~  151 (237)
T cd04168         139 ------EIKEKLSSDIVPM  151 (237)
T ss_pred             ------HHHHHHCCCeEEE
Confidence                  3444455554444

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PLN03110 Rab GTPase; Provisional

Probab=99.70  E-value=3.3e-15  Score=116.11  Aligned_cols=163  Identities=14%  Similarity=0.109  Sum_probs=97.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ...++|+++|++|+|||||+++|++......  ..+..........+.+ ++  ..+.||||||...           +.
T Consensus        10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~--~~~t~g~~~~~~~v~~-~~~~~~l~l~Dt~G~~~-----------~~   75 (216)
T PLN03110         10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLE--SKSTIGVEFATRTLQV-EGKTVKAQIWDTAGQER-----------YR   75 (216)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeEEEEEEEEEE-CCEEEEEEEEECCCcHH-----------HH
Confidence            3558999999999999999999998764322  1222222222334444 33  3789999999532           23


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                      .....+...++++|+|+|..+..+... ..++..+.....  ...|+++|.||+|+..... ..++.        .+.+.
T Consensus        76 ~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~~~-~~~~~--------~~~l~  144 (216)
T PLN03110         76 AITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD--SNIVIMMAGNKSDLNHLRS-VAEED--------GQALA  144 (216)
T ss_pred             HHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC--CCCeEEEEEEChhcccccC-CCHHH--------HHHHH
Confidence            333445668899999999974432222 223344444322  2479999999999754321 11111        22333


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      ...+..++      ..|+..+.+++++++.+.+.+.+
T Consensus       145 ~~~~~~~~------e~SA~~g~~v~~lf~~l~~~i~~  175 (216)
T PLN03110        145 EKEGLSFL------ETSALEATNVEKAFQTILLEIYH  175 (216)
T ss_pred             HHcCCEEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence            33333322      33455668899999888766644

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.70  E-value=4.7e-16  Score=121.14  Aligned_cols=163  Identities=19%  Similarity=0.148  Sum_probs=101.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccccccCC-------------CCCcee------------------------EEEEEEE
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSKAG-------------SSGVTK------------------------TCEMQRT   63 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~-------------~~~~t~------------------------~~~~~~~   63 (225)
                      +|+++|+.++|||||++.+....... ...             ..+.|.                        ......+
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~-~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   79 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDN-GRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEIC   79 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCC-CCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceee
Confidence            58999999999999999998532211 000             011111                        0001122


Q ss_pred             EeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEE
Q 036158           64 MLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVV  143 (225)
Q Consensus        64 ~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv  143 (225)
                      +. .+..+.++||||+.++       .......+.  ...+|++++|++++.+....+.+++.++.+.     ..|+++|
T Consensus        80 ~~-~~~~i~liDtpG~~~~-------~~~~~~~~~--~~~~D~~llVvda~~g~~~~d~~~l~~l~~~-----~ip~ivv  144 (224)
T cd04165          80 EK-SSKLVTFIDLAGHERY-------LKTTLFGLT--GYAPDYAMLVVAANAGIIGMTKEHLGLALAL-----NIPVFVV  144 (224)
T ss_pred             ee-CCcEEEEEECCCcHHH-------HHHHHHhhc--ccCCCEEEEEEECCCCCcHHHHHHHHHHHHc-----CCCEEEE
Confidence            33 5678999999997532       122222221  1368999999999878888888888888764     3789999


Q ss_pred             EecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcE--------------------EEeeCCCccccccHHHHHHHHHH
Q 036158          144 FTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC--------------------VLFDNKTKDTAKRTEQVGKLLSL  203 (225)
Q Consensus       144 ~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~v~~l~~~  203 (225)
                      +||+|+....  .+.....+     +++.+...+...                    -..-+....|+.++.++++|.+.
T Consensus       145 vNK~D~~~~~--~~~~~~~~-----l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~  217 (224)
T cd04165         145 VTKIDLAPAN--ILQETLKD-----LKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAF  217 (224)
T ss_pred             EECccccCHH--HHHHHHHH-----HHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHH
Confidence            9999986542  44444444     444444222110                    00112334577888999999998


Q ss_pred             HHH
Q 036158          204 VNS  206 (225)
Q Consensus       204 i~~  206 (225)
                      |..
T Consensus       218 L~~  220 (224)
T cd04165         218 LNL  220 (224)
T ss_pred             HHh
Confidence            864

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd04116 Rab9 Rab9 subfamily

Probab=99.70  E-value=1.6e-15  Score=113.27  Aligned_cols=161  Identities=16%  Similarity=0.077  Sum_probs=94.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ...++|+++|.+|+|||||++++++......  ..+..+.......+.+ ++  ..+.||||||..           .+.
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~i~D~~G~~-----------~~~   68 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQ--LFHTIGVEFLNKDLEV-DGHFVTLQIWDTAGQE-----------RFR   68 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcC--cCCceeeEEEEEEEEE-CCeEEEEEEEeCCChH-----------HHH
Confidence            3568999999999999999999997664221  1122222222233344 33  367899999953           223


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE  171 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~  171 (225)
                      .....+...+|++++|++.+++-+... ..++..+......  ....|+++|.||+|+.+.. ...++         +++
T Consensus        69 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~---------~~~  138 (170)
T cd04116          69 SLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQ-VSTEE---------AQA  138 (170)
T ss_pred             HhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccc-cCHHH---------HHH
Confidence            333445678899999999874422222 1223333332211  1236999999999975321 11111         334


Q ss_pred             HHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158          172 ILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNS  206 (225)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~  206 (225)
                      +.+..+.. ..    ...|+.++.++.++++.+.+
T Consensus       139 ~~~~~~~~-~~----~e~Sa~~~~~v~~~~~~~~~  168 (170)
T cd04116         139 WCRENGDY-PY----FETSAKDATNVAAAFEEAVR  168 (170)
T ss_pred             HHHHCCCC-eE----EEEECCCCCCHHHHHHHHHh
Confidence            44443321 11    23455667899999888754

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd00157 Rho Rho (Ras homology) family

Probab=99.70  E-value=1.5e-15  Score=113.41  Aligned_cols=162  Identities=16%  Similarity=0.070  Sum_probs=93.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      ++|+++|.+|+|||||+++|++......   ..++...........+ ....+.+|||||..+...        +   ..
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~--------~---~~   66 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTE---YVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDR--------L---RP   66 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCC---CCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc--------c---ch
Confidence            4799999999999999999998774211   1121222222223331 233699999999875421        1   11


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHh----hhcCCchHHHH
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL----GRECPKPLKEI  172 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~----~~~~~~~~~~~  172 (225)
                      .....+|++++|+|.+++.+...  ..++..+.....   ..|+++|.||+|+....  ......    .........+.
T Consensus        67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~v~~~~~~~~  141 (171)
T cd00157          67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDDE--NTLKKLEKGKEPITPEEGEKL  141 (171)
T ss_pred             hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhch--hhhhhcccCCCccCHHHHHHH
Confidence            23467899999999974322221  223444444322   48999999999987654  111000    00000112333


Q ss_pred             HHHcCC-cEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158          173 LQLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNS  206 (225)
Q Consensus       173 ~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~  206 (225)
                      ....+. .+      ...|+.++.+++++++.|.+
T Consensus       142 ~~~~~~~~~------~~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         142 AKEIGAIGY------MECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             HHHhCCeEE------EEeecCCCCCHHHHHHHHhh
Confidence            444343 22      23345566899999988754

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.69  E-value=3e-15  Score=110.88  Aligned_cols=160  Identities=16%  Similarity=0.130  Sum_probs=93.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      ++|+++|.+|+|||||+++++.......   ..+++........... ....+.+|||||..+.           .....
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----------~~~~~   66 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVED---YEPTKADSYRKKVVLDGEDVQLNILDTAGQEDY-----------AAIRD   66 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccc---cCCcchhhEEEEEEECCEEEEEEEEECCChhhh-----------hHHHH
Confidence            4799999999999999999997664221   1122222112222331 2246899999996533           12222


Q ss_pred             hcCCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      .....+|++++|++..++-+-. -...+..+..... ....|+++|+||+|..........+         ...+...++
T Consensus        67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~~~~~~~~~---------~~~~~~~~~  136 (164)
T cd04139          67 NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLEDKRQVSSEE---------AANLARQWG  136 (164)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEccccccccccCHHH---------HHHHHHHhC
Confidence            3455679999999986332111 1223333333211 2348999999999986522111111         233444444


Q ss_pred             CcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      .++      ...|+.++.+++++++.+.+.+.
T Consensus       137 ~~~------~~~Sa~~~~gi~~l~~~l~~~~~  162 (164)
T cd04139         137 VPY------VETSAKTRQNVEKAFYDLVREIR  162 (164)
T ss_pred             CeE------EEeeCCCCCCHHHHHHHHHHHHH
Confidence            433      34455667999999999987654

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04148 RGK RGK subfamily

Probab=99.69  E-value=2e-15  Score=117.66  Aligned_cols=162  Identities=19%  Similarity=0.151  Sum_probs=94.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      ++|+++|.+|+|||||++++++.........+.. ..+.....+.+. ....+.+|||||...      ...    .   
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~-~~~~~~~~i~~~~~~~~l~i~Dt~G~~~------~~~----~---   66 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASG-DDDTYERTVSVDGEESTLVVIDHWEQEM------WTE----D---   66 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCc-cccceEEEEEECCEEEEEEEEeCCCcch------HHH----h---
Confidence            4799999999999999999976553211111111 112222223331 234789999999751      111    1   


Q ss_pred             hcCC-CccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           99 MTKD-GIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        99 ~~~~-~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      .+.. .+|++++|+|++++-+-.. .+++..+.+.. .....|+++|.||+|+........++         .+++....
T Consensus        67 ~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~-~~~~~piilV~NK~Dl~~~~~v~~~~---------~~~~a~~~  136 (221)
T cd04148          67 SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNR-QLEDRPIILVGNKSDLARSREVSVQE---------GRACAVVF  136 (221)
T ss_pred             HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhccccceecHHH---------HHHHHHHc
Confidence            1223 7899999999975432221 22333343321 11347999999999976543111111         12233333


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      +..++      ..|+..+.+++++++.+.+.+...
T Consensus       137 ~~~~~------e~SA~~~~gv~~l~~~l~~~~~~~  165 (221)
T cd04148         137 DCKFI------ETSAGLQHNVDELLEGIVRQIRLR  165 (221)
T ss_pred             CCeEE------EecCCCCCCHHHHHHHHHHHHHhh
Confidence            33322      346667789999999999887643

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.69  E-value=1.1e-15  Score=112.87  Aligned_cols=154  Identities=12%  Similarity=0.062  Sum_probs=90.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT  100 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (225)
                      +|+++|.+|+|||||++++++....     ....|.......+.+ .+..+.+|||||....           ...+...
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~-----~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~-----------~~~~~~~   63 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVV-----TTIPTIGFNVETVEY-KNVSFTVWDVGGQDKI-----------RPLWKHY   63 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCC-----CCCCCcCcceEEEEE-CCEEEEEEECCCChhh-----------HHHHHHH
Confidence            5899999999999999999988731     112233333444555 6778999999997532           1222334


Q ss_pred             CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158          101 KDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN  178 (225)
Q Consensus       101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (225)
                      ...+|++++|+|+..+-+..  ....++...+..  ....|++++.||+|.....  ..++..+.     +....  ...
T Consensus        64 ~~~~~~~i~v~D~~~~~~~~--~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~-----~~~~~--~~~  132 (158)
T cd00878          64 YENTNGIIFVVDSSDRERIE--EAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEK-----LGLEK--ILG  132 (158)
T ss_pred             hccCCEEEEEEECCCHHHHH--HHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHh-----hChhh--ccC
Confidence            45679999999997431111  122222222211  1247999999999987543  23332222     11110  111


Q ss_pred             cEEEeeCCCccccccHHHHHHHHHHHH
Q 036158          179 RCVLFDNKTKDTAKRTEQVGKLLSLVN  205 (225)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~v~~l~~~i~  205 (225)
                      ....   ....|+.++.+++++++.|.
T Consensus       133 ~~~~---~~~~Sa~~~~gv~~~~~~l~  156 (158)
T cd00878         133 RRWH---IQPCSAVTGDGLDEGLDWLL  156 (158)
T ss_pred             CcEE---EEEeeCCCCCCHHHHHHHHh
Confidence            1111   12335566789999988875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=6e-16  Score=125.52  Aligned_cols=156  Identities=21%  Similarity=0.274  Sum_probs=111.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccc-----cCCCCCceeEEEEEEEEeeCC---ceEEEEeCCCCCCCCCCcHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKS-----KAGSSGVTKTCEMQRTMLKDG---QVVNVIDTPGLFDSSADSEFV   89 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~-----~~~~~~~t~~~~~~~~~~~~~---~~~~liDtPG~~~~~~~~~~~   89 (225)
                      -.+++.++|.+|.|||||||+|++......     ....+..|.......+.+.++   .+++++||||++|.-.+. .-
T Consensus        20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns-~~   98 (366)
T KOG2655|consen   20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNS-NC   98 (366)
T ss_pred             CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccc-cc
Confidence            358999999999999999999998754322     111222344555555554333   279999999999875432 22


Q ss_pred             HHHHHHHHh-----------------hcCCCccEEEEEEeC-CCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158           90 SKEIVKCIG-----------------MTKDGIHAVLVVFSV-RNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELE  151 (225)
Q Consensus        90 ~~~~~~~~~-----------------~~~~~~~~ii~v~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~  151 (225)
                      ++-+..++.                 ....++|+++|.++. .+++.+-|.+.++.+...      .+++.|+.|+|.+.
T Consensus        99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~------vNiIPVI~KaD~lT  172 (366)
T KOG2655|consen   99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKK------VNLIPVIAKADTLT  172 (366)
T ss_pred             chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhcc------ccccceeeccccCC
Confidence            333333221                 123478999999965 457999999999888875      79999999999887


Q ss_pred             CCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCC
Q 036158          152 DNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKT  187 (225)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (225)
                      ..  .+..+...     +.+.++.++++++.|....
T Consensus       173 ~~--El~~~K~~-----I~~~i~~~nI~vf~fp~~~  201 (366)
T KOG2655|consen  173 KD--ELNQFKKR-----IRQDIEEHNIKVFDFPTDE  201 (366)
T ss_pred             HH--HHHHHHHH-----HHHHHHHcCcceecCCCCc
Confidence            75  77777666     8889999999888776553

>cd04114 Rab30 Rab30 subfamily

Probab=99.69  E-value=4.6e-15  Score=110.65  Aligned_cols=160  Identities=15%  Similarity=0.099  Sum_probs=93.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ...+|+++|.+|+|||||++++.+......  ..++.+.......+.+ .+  ..+.+|||||....           ..
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~-----------~~   71 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPG--QGATIGVDFMIKTVEI-KGEKIKLQIWDTAGQERF-----------RS   71 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHHH-----------HH
Confidence            458999999999999999999986553211  1222223333334444 44  35788999996422           22


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      ........+|++++|+|..+..+... ..++..+......  ..|+++|.||+|.....  .+....       .+.+.+
T Consensus        72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~~~i~v~NK~D~~~~~--~i~~~~-------~~~~~~  140 (169)
T cd04114          72 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANN--KVITILVGNKIDLAERR--EVSQQR-------AEEFSD  140 (169)
T ss_pred             HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccccc--ccCHHH-------HHHHHH
Confidence            22334567899999999874322221 2233334443322  37889999999975432  111110       111222


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                      .....+      ...|+.++.+++++++.|.+.+
T Consensus       141 ~~~~~~------~~~Sa~~~~gv~~l~~~i~~~~  168 (169)
T cd04114         141 AQDMYY------LETSAKESDNVEKLFLDLACRL  168 (169)
T ss_pred             HcCCeE------EEeeCCCCCCHHHHHHHHHHHh
Confidence            222222      2445566789999999987653

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.69  E-value=8.1e-16  Score=122.97  Aligned_cols=115  Identities=17%  Similarity=0.206  Sum_probs=85.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccc----------------cccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAF----------------KSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA   84 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~----------------~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (225)
                      +|+++|++|+|||||+|+|+.....                .......+.|.......+.| ++..++++||||+.++. 
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~df~-   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KDHRINIIDTPGHVDFT-   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CCEEEEEEECCCcHHHH-
Confidence            5899999999999999999742211                01122456788888888898 88999999999986531 


Q ss_pred             CcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158           85 DSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED  152 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~  152 (225)
                            .    .+..+...+|++++|+|+.......+...++.+.+.     ..|+++++||+|....
T Consensus        79 ------~----~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~-----~~p~ivviNK~D~~~a  131 (270)
T cd01886          79 ------I----EVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRY-----NVPRIAFVNKMDRTGA  131 (270)
T ss_pred             ------H----HHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence                  2    223344566999999999877777777777766553     3789999999997654

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd04176 Rap2 Rap2 subgroup

Probab=99.69  E-value=2e-15  Score=112.01  Aligned_cols=157  Identities=15%  Similarity=0.157  Sum_probs=93.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      ++|+++|.+|+|||||++++........   ..++........+.. ++.  .+.||||||...+..           .+
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~-----------~~   66 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEK---YDPTIEDFYRKEIEV-DSSPSVLEILDTAGTEQFAS-----------MR   66 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCC---CCCchhheEEEEEEE-CCEEEEEEEEECCCcccccc-----------hH
Confidence            6899999999999999999987654322   112222233334444 343  577899999754421           12


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      ..++..+|++++|+|..++-+-.+ ..++..+..... ....|+++|.||+|+.........+         ...+.+..
T Consensus        67 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~~~~~~~~~---------~~~~~~~~  136 (163)
T cd04176          67 DLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLESEREVSSAE---------GRALAEEW  136 (163)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhcCccCHHH---------HHHHHHHh
Confidence            234557899999999975432222 233444444321 1347999999999975432111111         12222333


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                      +..+      .+.|+.++.++++++..+.+.
T Consensus       137 ~~~~------~~~Sa~~~~~v~~l~~~l~~~  161 (163)
T cd04176         137 GCPF------METSAKSKTMVNELFAEIVRQ  161 (163)
T ss_pred             CCEE------EEecCCCCCCHHHHHHHHHHh
Confidence            3322      244566778999999888653

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.69  E-value=1.2e-15  Score=131.57  Aligned_cols=165  Identities=19%  Similarity=0.263  Sum_probs=117.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCC--CcHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA--DSEFVSKEIVK   95 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~--~~~~~~~~~~~   95 (225)
                      +..+|+++|.+|+||||++|+|+|.+.  ....-++.|.+.....+.. .+..+.++|+||.++...  .++++.+.+  
T Consensus         2 ~~~~valvGNPNvGKTtlFN~LTG~~q--~VgNwpGvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~~S~DE~Var~~--   76 (653)
T COG0370           2 KKLTVALVGNPNVGKTTLFNALTGANQ--KVGNWPGVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTAYSEDEKVARDF--   76 (653)
T ss_pred             CcceEEEecCCCccHHHHHHHHhccCc--eecCCCCeeEEEEEEEEEe-cCceEEEEeCCCcCCCCCCCchHHHHHHH--
Confidence            346799999999999999999999986  4455789999999988888 788899999999997553  223333322  


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                       +  ...++|+++-|+|+. .+   ++.+.-.++- +  +...|+++++|++|..+...          ..-...++-+.
T Consensus        77 -l--l~~~~D~ivnVvDAt-nL---eRnLyltlQL-l--E~g~p~ilaLNm~D~A~~~G----------i~ID~~~L~~~  136 (653)
T COG0370          77 -L--LEGKPDLIVNVVDAT-NL---ERNLYLTLQL-L--ELGIPMILALNMIDEAKKRG----------IRIDIEKLSKL  136 (653)
T ss_pred             -H--hcCCCCEEEEEcccc-hH---HHHHHHHHHH-H--HcCCCeEEEeccHhhHHhcC----------CcccHHHHHHH
Confidence             2  255889999999997 43   3333222221 1  12479999999999765541          22223445555


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG  213 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~  213 (225)
                      .|.++..      .+|.++.++++|++++.++..++..
T Consensus       137 LGvPVv~------tvA~~g~G~~~l~~~i~~~~~~~~~  168 (653)
T COG0370         137 LGVPVVP------TVAKRGEGLEELKRAIIELAESKTT  168 (653)
T ss_pred             hCCCEEE------EEeecCCCHHHHHHHHHHhcccccc
Confidence            5665543      4455678999999999888877764

>cd04126 Rab20 Rab20 subfamily

Probab=99.69  E-value=9.6e-16  Score=119.06  Aligned_cols=113  Identities=21%  Similarity=0.103  Sum_probs=73.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (225)
                      ++|+++|.+|+|||||+++++.......     ..|.........+ ....+.||||||...+.           .....
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~-----~~Tig~~~~~~~~-~~~~l~iwDt~G~e~~~-----------~l~~~   63 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKDT-----VSTVGGAFYLKQW-GPYNISIWDTAGREQFH-----------GLGSM   63 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCC-----CCccceEEEEEEe-eEEEEEEEeCCCcccch-----------hhHHH
Confidence            4799999999999999999998764211     2233333333444 45679999999975431           11223


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158          100 TKDGIHAVLVVFSVRNRFSEEEG-AAIHILESLFGKKISDYMIVVFTGGDELE  151 (225)
Q Consensus       100 ~~~~~~~ii~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~vv~~k~D~~~  151 (225)
                      ++..+|++|+|+|+.++.+-... ..+..+.+...  ...|+++|.||+|+..
T Consensus        64 ~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~--~~~piIlVgNK~DL~~  114 (220)
T cd04126          64 YCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTAN--EDCLFAVVGNKLDLTE  114 (220)
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence            46688999999999854333332 22333333221  2368999999999865

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd01892 Miro2 Miro2 subfamily

Probab=99.69  E-value=4e-15  Score=111.28  Aligned_cols=163  Identities=11%  Similarity=0.009  Sum_probs=96.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      .+.++|+++|.+|+|||||++++++...... ...+..........+.+ ++  ..+.+|||+|...+..          
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~-~~~~T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~----------   69 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLN-AYSPTIKPRYAVNTVEV-YGQEKYLILREVGEDEVAIL----------   69 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcc-cCCCccCcceEEEEEEE-CCeEEEEEEEecCCcccccc----------
Confidence            3568999999999999999999998764201 11222222222233444 34  4688999999764321          


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                       ....++..+|++++|+|++++.  ......+++... ......|+++|.||+|+.+.....    .     ....++.+
T Consensus        70 -~~~~~~~~~d~~llv~d~~~~~--s~~~~~~~~~~~-~~~~~~p~iiv~NK~Dl~~~~~~~----~-----~~~~~~~~  136 (169)
T cd01892          70 -LNDAELAACDVACLVYDSSDPK--SFSYCAEVYKKY-FMLGEIPCLFVAAKADLDEQQQRY----E-----VQPDEFCR  136 (169)
T ss_pred             -cchhhhhcCCEEEEEEeCCCHH--HHHHHHHHHHHh-ccCCCCeEEEEEEccccccccccc----c-----cCHHHHHH
Confidence             1122356889999999997432  222233344332 111247999999999975432100    0     01233333


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      ..+..     .....|+..+.+++++++.+.+++.
T Consensus       137 ~~~~~-----~~~~~Sa~~~~~v~~lf~~l~~~~~  166 (169)
T cd01892         137 KLGLP-----PPLHFSSKLGDSSNELFTKLATAAQ  166 (169)
T ss_pred             HcCCC-----CCEEEEeccCccHHHHHHHHHHHhh
Confidence            33321     1134466677899999999987764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.68  E-value=1.4e-15  Score=128.13  Aligned_cols=167  Identities=19%  Similarity=0.222  Sum_probs=106.6

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCcc------c--------cccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCC
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRA------F--------KSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD   81 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~------~--------~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (225)
                      .++.++|+++|+.++|||||+++|++...      +        .......+.|.......+.. ++..+.|+||||+.+
T Consensus         9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~-~~~~i~~iDtPGh~~   87 (396)
T PRK12735          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET-ANRHYAHVDCPGHAD   87 (396)
T ss_pred             CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC-CCcEEEEEECCCHHH
Confidence            46789999999999999999999996210      0        01112456777776666665 677899999999742


Q ss_pred             CCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccccc-EEEEEecCCCCCCCcccHHHH
Q 036158           82 SSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDY-MIVVFTGGDELEDNDETLEDY  160 (225)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~vv~~k~D~~~~~~~~~~~~  160 (225)
                                 +...+......+|++++|+|+.......+.+.+..+...     ..| +++++||+|..... ...+..
T Consensus        88 -----------f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~-----gi~~iivvvNK~Dl~~~~-~~~~~~  150 (396)
T PRK12735         88 -----------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-----GVPYIVVFLNKCDMVDDE-ELLELV  150 (396)
T ss_pred             -----------HHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHc-----CCCeEEEEEEecCCcchH-HHHHHH
Confidence                       222233444578999999999866666666666665542     245 45689999986422 122333


Q ss_pred             hhhcCCchHHHHHHHcCCc---EEEeeCCCccccccH----------HHHHHHHHHHHHHHH
Q 036158          161 LGRECPKPLKEILQLCDNR---CVLFDNKTKDTAKRT----------EQVGKLLSLVNSVIV  209 (225)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----------~~v~~l~~~i~~~~~  209 (225)
                      ..+     ++.+++.++..   +..+    +.|+.++          .++.+|++.|.+.++
T Consensus       151 ~~e-----i~~~l~~~~~~~~~~~ii----~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        151 EME-----VRELLSKYDFPGDDTPII----RGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             HHH-----HHHHHHHcCCCcCceeEE----ecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence            233     66667666531   2222    1222222          367899999988764

>PRK12736 elongation factor Tu; Reviewed

Probab=99.68  E-value=1.4e-15  Score=128.14  Aligned_cols=173  Identities=17%  Similarity=0.170  Sum_probs=110.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccc--------------cccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCC
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAF--------------KSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD   81 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (225)
                      .+++++|+++|+.++|||||+++|++....              .......+.|.......+.. ++..+.|+||||+.+
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-~~~~i~~iDtPGh~~   87 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-EKRHYAHVDCPGHAD   87 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC-CCcEEEEEECCCHHH
Confidence            577899999999999999999999863210              01112456777776666655 667899999999642


Q ss_pred             CCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccccc-EEEEEecCCCCCCCcccHHHH
Q 036158           82 SSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDY-MIVVFTGGDELEDNDETLEDY  160 (225)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~vv~~k~D~~~~~~~~~~~~  160 (225)
                      +           ...+......+|++++|+|+.+.....+.+.+..+...     ..| +++++||+|..... ...+..
T Consensus        88 f-----------~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~-----g~~~~IvviNK~D~~~~~-~~~~~i  150 (394)
T PRK12736         88 Y-----------VKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV-----GVPYLVVFLNKVDLVDDE-ELLELV  150 (394)
T ss_pred             H-----------HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-----CCCEEEEEEEecCCcchH-HHHHHH
Confidence            2           12222233477999999999877777777777776553     245 67899999976332 122222


Q ss_pred             hhhcCCchHHHHHHHcCC-----cEEEeeCCCcc--ccccHHHHHHHHHHHHHHHHHc
Q 036158          161 LGRECPKPLKEILQLCDN-----RCVLFDNKTKD--TAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ..+     +++.+...+.     +++..+.....  ...-..++.+|++.+.+.++..
T Consensus       151 ~~~-----i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~  203 (394)
T PRK12736        151 EME-----VRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTP  203 (394)
T ss_pred             HHH-----HHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCC
Confidence            223     6666666653     23333322110  0001136789999998877543

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.68  E-value=1.2e-15  Score=135.61  Aligned_cols=162  Identities=15%  Similarity=0.192  Sum_probs=105.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee---CCceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK---DGQVVNVIDTPGLFDSSADSEFVSKEI   93 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (225)
                      ...++|+|+|++|+|||||+++|.+......  ...+.|.....+.+.+.   .+..++||||||+..           +
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~--e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~-----------F  308 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQK--EAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEA-----------F  308 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccc--cCCccccccceEEEEEEecCCceEEEEEECCcHHH-----------H
Confidence            4668999999999999999999997765322  23345555444454442   347899999999743           2


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH--
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE--  171 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~--  171 (225)
                      ...+......+|++|+|++++++......+.+..+..     ...|+++++||+|....   ..++..++     +..  
T Consensus       309 ~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~-----~~iPiIVViNKiDl~~~---~~e~v~~e-----L~~~~  375 (742)
T CHL00189        309 SSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQA-----ANVPIIVAINKIDKANA---NTERIKQQ-----LAKYN  375 (742)
T ss_pred             HHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHh-----cCceEEEEEECCCcccc---CHHHHHHH-----HHHhc
Confidence            2333334557799999999987766666666655543     23799999999997653   22222222     111  


Q ss_pred             -HHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          172 -ILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       172 -~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                       +.+.++..+.    ..+.||.++.++++|++.|..+.
T Consensus       376 ll~e~~g~~vp----vv~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        376 LIPEKWGGDTP----MIPISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             cchHhhCCCce----EEEEECCCCCCHHHHHHhhhhhh
Confidence             1122222111    23456677899999999987654

>cd00876 Ras Ras family

Probab=99.68  E-value=3.1e-15  Score=110.24  Aligned_cols=156  Identities=15%  Similarity=0.152  Sum_probs=92.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKD--GQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      +|+++|++|+|||||++++++... ...  ...++.......... .  ...+.+||+||....           .....
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~-~~~--~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~-----------~~~~~   65 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTF-VEE--YDPTIEDSYRKTIVV-DGETYTLDILDTAGQEEF-----------SAMRD   65 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCC-CcC--cCCChhHeEEEEEEE-CCEEEEEEEEECCChHHH-----------HHHHH
Confidence            589999999999999999997763 221  222222333333444 3  246889999996532           12222


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      .....+|++++|++.++..+..+ ..++..+..... ....|++++.||+|.........++         ..+.....+
T Consensus        66 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~---------~~~~~~~~~  135 (160)
T cd00876          66 LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKD-DEDIPIVLVGNKCDLENERQVSKEE---------GKALAKEWG  135 (160)
T ss_pred             HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCcccccceecHHH---------HHHHHHHcC
Confidence            34456799999999874322222 233334443322 1248999999999987633111111         333444444


Q ss_pred             CcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                      .+++      ..|+..+.+++++++.|.+.
T Consensus       136 ~~~~------~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876         136 CPFI------ETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CcEE------EeccCCCCCHHHHHHHHHhh
Confidence            3333      33445568999999988653

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PLN03108 Rab family protein; Provisional

Probab=99.68  E-value=6.1e-15  Score=114.16  Aligned_cols=161  Identities=14%  Similarity=0.100  Sum_probs=92.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ..++|+|+|++|+|||||+|++++.......  .+..........+.+ ++  ..+.+|||||...           +..
T Consensus         5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~--~~ti~~~~~~~~i~~-~~~~i~l~l~Dt~G~~~-----------~~~   70 (210)
T PLN03108          5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--DLTIGVEFGARMITI-DNKPIKLQIWDTAGQES-----------FRS   70 (210)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCCccceEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHH
Confidence            3489999999999999999999977643221  112222222223344 33  3688999999542           122


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      .....+..+|++++|+|+.+.-+... ..++..+.....  ...|+++|.||+|+........++         ..++.+
T Consensus        71 ~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~---------~~~~~~  139 (210)
T PLN03108         71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHRRAVSTEE---------GEQFAK  139 (210)
T ss_pred             HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCccccCCCHHH---------HHHHHH
Confidence            22334557899999999974322222 123333333221  247999999999976432112111         223333


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      ..+..++      ..|+.++.+++++++.+.+.+.
T Consensus       140 ~~~~~~~------e~Sa~~~~~v~e~f~~l~~~~~  168 (210)
T PLN03108        140 EHGLIFM------EASAKTAQNVEEAFIKTAAKIY  168 (210)
T ss_pred             HcCCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence            3343322      3344556889998876665443

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.68  E-value=1.3e-15  Score=111.91  Aligned_cols=155  Identities=17%  Similarity=0.189  Sum_probs=90.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcC
Q 036158           22 LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTK  101 (225)
Q Consensus        22 i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~  101 (225)
                      |+++|++|+|||||+|+|.+......    ...|.......... ++..+.+|||||...           +...+..+.
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~----~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~-----------~~~~~~~~~   65 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSED----TIPTVGFNMRKVTK-GNVTLKVWDLGGQPR-----------FRSMWERYC   65 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcC----ccCCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHHH
Confidence            79999999999999999998764221    11232333334444 567899999999642           222333445


Q ss_pred             CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc
Q 036158          102 DGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR  179 (225)
Q Consensus       102 ~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (225)
                      ..+|++++|+|+.+..+  ......++......  ....|+++|+||+|.....  ...+....     + .+.......
T Consensus        66 ~~~d~ii~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~--~~~~~~~~-----~-~~~~~~~~~  135 (159)
T cd04159          66 RGVNAIVYVVDAADRTA--LEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL--SVDELIEQ-----M-NLKSITDRE  135 (159)
T ss_pred             hcCCEEEEEEECCCHHH--HHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc--CHHHHHHH-----h-CcccccCCc
Confidence            67899999999873211  11122233332221  1236999999999976543  22222111     0 000000111


Q ss_pred             EEEeeCCCccccccHHHHHHHHHHHHH
Q 036158          180 CVLFDNKTKDTAKRTEQVGKLLSLVNS  206 (225)
Q Consensus       180 ~~~~~~~~~~~~~~~~~v~~l~~~i~~  206 (225)
                      +..    ...|+.++.+++++++.|.+
T Consensus       136 ~~~----~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159         136 VSC----YSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             eEE----EEEEeccCCChHHHHHHHhh
Confidence            111    23456677899999998865

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.68  E-value=7.8e-16  Score=120.87  Aligned_cols=184  Identities=16%  Similarity=0.161  Sum_probs=115.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCC-CcHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA-DSEFVSKEIVK   95 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~-~~~~~~~~~~~   95 (225)
                      -..++|+|+|.+|+|||||.|.+.|.+++.++. ...+|+......+.- +...++|+||||+..... ........+.+
T Consensus        70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~-K~~TTr~~ilgi~ts-~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq  147 (379)
T KOG1423|consen   70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSR-KVHTTRHRILGIITS-GETQLVFYDTPGLVSKKMHRRHHLMMSVLQ  147 (379)
T ss_pred             ceEEEEEEEcCCCcchhhhhhHhhCCccccccc-cccceeeeeeEEEec-CceEEEEecCCcccccchhhhHHHHHHhhh
Confidence            346899999999999999999999999887743 334444443333443 777999999999986542 22233333444


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCch-------
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKP-------  168 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~-------  168 (225)
                      ....+...+|.++.|+|+.+.-.....+.+..+.++.    ..|-++|.||.|.++.....++ ......+..       
T Consensus       148 ~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys----~ips~lvmnkid~~k~k~~Ll~-l~~~Lt~g~l~~~kl~  222 (379)
T KOG1423|consen  148 NPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYS----KIPSILVMNKIDKLKQKRLLLN-LKDLLTNGELAKLKLE  222 (379)
T ss_pred             CHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHh----cCCceeeccchhcchhhhHHhh-hHHhccccccchhhhh
Confidence            4445667889999999997444444556677776653    2688999999998765311111 111111111       


Q ss_pred             HHHHHHH----------cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          169 LKEILQL----------CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       169 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      +++-...          ||  +.-|......|+..+.++++|.+++..-.+
T Consensus       223 v~~~f~~~p~~~~~~~~~g--wshfe~vF~vSaL~G~GikdlkqyLmsqa~  271 (379)
T KOG1423|consen  223 VQEKFTDVPSDEKWRTICG--WSHFERVFMVSALYGEGIKDLKQYLMSQAP  271 (379)
T ss_pred             HHHHhccCCcccccccccC--cccceeEEEEecccccCHHHHHHHHHhcCC
Confidence            1111111          11  222334445677788999999999965443

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.68  E-value=3.9e-15  Score=114.19  Aligned_cols=160  Identities=18%  Similarity=0.163  Sum_probs=94.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      +|+++|.+|+|||||++++++......   ...++.......+.+ .+  ..+.+|||||...+.           ....
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~-----------~~~~   65 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPK---YRRTVEEMHRKEYEV-GGVSLTLDILDTSGSYSFP-----------AMRK   65 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcc---CCCchhhheeEEEEE-CCEEEEEEEEECCCchhhh-----------HHHH
Confidence            589999999999999999998764221   112222222233444 34  478899999975431           1222


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH-Hc
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ-LC  176 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  176 (225)
                      .+...+|++|+|+|+.+..+... ..++..+.+... ....|+++|.||+|..... ..+.. ..      ..+... .+
T Consensus        66 ~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~-~~v~~-~~------~~~~~~~~~  136 (198)
T cd04147          66 LSIQNSDAFALVYAVDDPESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLEEE-RQVPA-KD------ALSTVELDW  136 (198)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEcccccccc-ccccH-HH------HHHHHHhhc
Confidence            35668899999999974322222 222333333322 1247999999999976532 11110 00      111111 22


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      +..++      ..|+.++.+++++++.+.+.+..
T Consensus       137 ~~~~~------~~Sa~~g~gv~~l~~~l~~~~~~  164 (198)
T cd04147         137 NCGFV------ETSAKDNENVLEVFKELLRQANL  164 (198)
T ss_pred             CCcEE------EecCCCCCCHHHHHHHHHHHhhc
Confidence            22222      34667779999999999876653

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.68  E-value=7.7e-16  Score=115.82  Aligned_cols=161  Identities=17%  Similarity=0.088  Sum_probs=93.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEE-EEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTC-EMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ++|+++|.+|+|||||++++...... ..  . .+|... ....+.+ ++  ..+.||||||...+.           ..
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~-~~--~-~pt~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~   65 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFP-SE--Y-VPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYD-----------RL   65 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCC-CC--C-CCceeeeeEEEEEE-CCEEEEEEEEECCCccchh-----------hh
Confidence            68999999999999999999976531 11  1 122222 1223444 44  468899999976431           12


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcC-----CchH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGREC-----PKPL  169 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~-----~~~~  169 (225)
                      ...++..+|++|+|+|.+++.+-...  .++..+....   ...|+++|.||.|+....  ...+.+....     .+..
T Consensus        66 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~~~~--~~~~~l~~~~~~~v~~~~~  140 (175)
T cd01874          66 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC---PKTPFLLVGTQIDLRDDP--STIEKLAKNKQKPITPETG  140 (175)
T ss_pred             hhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEECHhhhhCh--hhHHHhhhccCCCcCHHHH
Confidence            23456688999999999754333322  2334444322   247999999999975432  1111111100     0112


Q ss_pred             HHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158          170 KEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNS  206 (225)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~  206 (225)
                      +++.+..+ .+.+|    ..||.++.+++++++.+.+
T Consensus       141 ~~~a~~~~-~~~~~----e~SA~tg~~v~~~f~~~~~  172 (175)
T cd01874         141 EKLARDLK-AVKYV----ECSALTQKGLKNVFDEAIL  172 (175)
T ss_pred             HHHHHHhC-CcEEE----EecCCCCCCHHHHHHHHHH
Confidence            22332222 12222    4456677999999988765

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04135 Tc10 TC10 subfamily

Probab=99.68  E-value=1.6e-15  Score=113.69  Aligned_cols=164  Identities=16%  Similarity=0.089  Sum_probs=94.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      ++|+++|.+|+|||||++++.+......   ..++........+.. ++.  .+.+|||||..++..           ..
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------~~   65 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEE---YVPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDR-----------LR   65 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCC---CCCceeeeeEEEEEE-CCEEEEEEEEeCCCcccccc-----------cc
Confidence            4799999999999999999997663211   111122222223344 333  477999999765421           11


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHh---hhcC-CchHHH
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL---GREC-PKPLKE  171 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~---~~~~-~~~~~~  171 (225)
                      ......+|++++|++..++-+....  .++..+...   ....|+++|.||+|+.... .......   .... ....+.
T Consensus        66 ~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~---~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~  141 (174)
T cd04135          66 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY---APNVPYLLVGTQIDLRDDP-KTLARLNDMKEKPVTVEQGQK  141 (174)
T ss_pred             cccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh---CCCCCEEEEeEchhhhcCh-hhHHHHhhccCCCCCHHHHHH
Confidence            2356688999999998744332221  234444433   2347999999999975432 1111110   0000 011223


Q ss_pred             HHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          172 ILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                      ..+..+... +    ...|+.++.+++++++.+.+.
T Consensus       142 ~~~~~~~~~-~----~e~Sa~~~~gi~~~f~~~~~~  172 (174)
T cd04135         142 LAKEIGAHC-Y----VECSALTQKGLKTVFDEAILA  172 (174)
T ss_pred             HHHHcCCCE-E----EEecCCcCCCHHHHHHHHHHH
Confidence            333333211 1    245667779999999888654

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.68  E-value=2.4e-15  Score=113.15  Aligned_cols=162  Identities=15%  Similarity=0.128  Sum_probs=106.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      .....+|+++|..||||||+++.|.......     ..+|.......+.+ .+..+.+||.+|..           .++.
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~i~~-~~~~~~~~d~gG~~-----------~~~~   73 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEEIKY-KGYSLTIWDLGGQE-----------SFRP   73 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEEEEE-TTEEEEEEEESSSG-----------GGGG
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhccccc-----cCcccccccceeee-CcEEEEEEeccccc-----------cccc
Confidence            3678999999999999999999998765322     33455666677777 88899999999953           2345


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                      .+..++..+|++|||+|..+..  .-.+..+.+.+++...  ...|++|+.||.|.....  ..++.... +.  +.. +
T Consensus        74 ~w~~y~~~~~~iIfVvDssd~~--~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~--~~~~i~~~-l~--l~~-l  145 (175)
T PF00025_consen   74 LWKSYFQNADGIIFVVDSSDPE--RLQEAKEELKELLNDPELKDIPILILANKQDLPDAM--SEEEIKEY-LG--LEK-L  145 (175)
T ss_dssp             GGGGGHTTESEEEEEEETTGGG--GHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS--THHHHHHH-TT--GGG-T
T ss_pred             cceeeccccceeEEEEecccce--eecccccchhhhcchhhcccceEEEEeccccccCcc--hhhHHHhh-hh--hhh-c
Confidence            5666778999999999987331  1222333444444331  347999999999976553  33333222 00  011 1


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                      . ...++..+    .+++.++.++.+.+++|.+.
T Consensus       146 ~-~~~~~~v~----~~sa~~g~Gv~e~l~WL~~~  174 (175)
T PF00025_consen  146 K-NKRPWSVF----SCSAKTGEGVDEGLEWLIEQ  174 (175)
T ss_dssp             T-SSSCEEEE----EEBTTTTBTHHHHHHHHHHH
T ss_pred             c-cCCceEEE----eeeccCCcCHHHHHHHHHhc
Confidence            1 12334443    33556679999999998764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd01875 RhoG RhoG subfamily

Probab=99.68  E-value=3.7e-15  Score=113.68  Aligned_cols=168  Identities=15%  Similarity=0.075  Sum_probs=97.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEE-EEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCE-MQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ..++|+++|..|+|||||++++...... ...   ..|.... ...+.+ ++  ..+.+|||||...+           .
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~-~~~---~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~~-----------~   65 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFP-KEY---IPTVFDNYSAQTAV-DGRTVSLNLWDTAGQEEY-----------D   65 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCC-cCC---CCceEeeeEEEEEE-CCEEEEEEEEECCCchhh-----------h
Confidence            3479999999999999999999876531 111   1222211 112233 33  47889999996532           2


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCC----ch
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECP----KP  168 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~----~~  168 (225)
                      .....++.++|++|+|+|++++-+-+..  .++..+....   ...|+++|.||.|+.... ...+........    +.
T Consensus        66 ~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~---~~~piilvgNK~DL~~~~-~~~~~~~~~~~~~v~~~~  141 (191)
T cd01875          66 RLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC---PNVPILLVGTKKDLRNDA-DTLKKLKEQGQAPITPQQ  141 (191)
T ss_pred             hhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEeChhhhcCh-hhHHHHhhccCCCCCHHH
Confidence            3334567789999999999754333322  1233333322   247999999999975432 111111111001    11


Q ss_pred             HHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          169 LKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      .+++.+..+. +.++    ..||..+.+++++++.+.+.+..
T Consensus       142 ~~~~a~~~~~-~~~~----e~SAk~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         142 GGALAKQIHA-VKYL----ECSALNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             HHHHHHHcCC-cEEE----EeCCCCCCCHHHHHHHHHHHHhc
Confidence            2333333331 1122    34556778999999999876643

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.67  E-value=6e-15  Score=110.89  Aligned_cols=164  Identities=16%  Similarity=0.047  Sum_probs=94.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      +++|+++|.+|+|||||+.+++..... ..  ..++........+.. ++  ..+.+|||||....           ...
T Consensus         1 ~~ki~iiG~~~vGKSsli~~~~~~~f~-~~--~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~   65 (174)
T cd01871           1 AIKCVVVGDGAVGKTCLLISYTTNAFP-GE--YIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDY-----------DRL   65 (174)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhcCCCC-Cc--CCCcceeeeEEEEEE-CCEEEEEEEEECCCchhh-----------hhh
Confidence            368999999999999999999875532 11  111111221222333 33  46889999996533           122


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhh----cCCchHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR----ECPKPLK  170 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~----~~~~~~~  170 (225)
                      ...+...+|++|+|+|++++-+-...  .++..+....   ...|+++|.||.|+.+.. ...+...+.    ...+..+
T Consensus        66 ~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~  141 (174)
T cd01871          66 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDK-DTIEKLKEKKLTPITYPQGL  141 (174)
T ss_pred             hhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhccCh-hhHHHHhhccCCCCCHHHHH
Confidence            23456788999999999754332221  2334444322   247999999999975432 122222111    0111123


Q ss_pred             HHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158          171 EILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNS  206 (225)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~  206 (225)
                      ++.+..+. ..+    ...||.++.+++++++.+.+
T Consensus       142 ~~~~~~~~-~~~----~e~Sa~~~~~i~~~f~~l~~  172 (174)
T cd01871         142 AMAKEIGA-VKY----LECSALTQKGLKTVFDEAIR  172 (174)
T ss_pred             HHHHHcCC-cEE----EEecccccCCHHHHHHHHHH
Confidence            33333332 111    24566778999999988864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04134 Rho3 Rho3 subfamily

Probab=99.67  E-value=7.2e-16  Score=117.42  Aligned_cols=167  Identities=16%  Similarity=0.114  Sum_probs=96.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      .+|+++|.+|+|||||++++++...... . .+... ......+.. ++  ..+.||||||...+.           ...
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~-~-~~t~~-~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~-----------~l~   65 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQV-Y-EPTVF-ENYVHDIFV-DGLHIELSLWDTAGQEEFD-----------RLR   65 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCc-c-CCcce-eeeEEEEEE-CCEEEEEEEEECCCChhcc-----------ccc
Confidence            3799999999999999999997664221 1 11111 111122333 33  478999999975431           122


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhc-----CCchHH
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRE-----CPKPLK  170 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~-----~~~~~~  170 (225)
                      ..++..+|++++|++++++-+-...  .++..+....   ...|+++|.||+|+....  ...+...+.     ..+...
T Consensus        66 ~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~---~~~piilvgNK~Dl~~~~--~~~~~~~~~~~~~v~~~~~~  140 (189)
T cd04134          66 SLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC---PGVKLVLVALKCDLREAR--NERDDLQRYGKHTISYEEGL  140 (189)
T ss_pred             cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccCh--hhHHHHhhccCCCCCHHHHH
Confidence            2356788999999999854333222  2344444322   247999999999986543  111111110     000112


Q ss_pred             HHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          171 EILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ++....+. +.+    ...||.++.+++++++.+.+.+...
T Consensus       141 ~~~~~~~~-~~~----~e~SAk~~~~v~e~f~~l~~~~~~~  176 (189)
T cd04134         141 AVAKRINA-LRY----LECSAKLNRGVNEAFTEAARVALNV  176 (189)
T ss_pred             HHHHHcCC-CEE----EEccCCcCCCHHHHHHHHHHHHhcc
Confidence            22322221 122    2456677799999999998777643

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.67  E-value=1.4e-15  Score=133.36  Aligned_cols=167  Identities=15%  Similarity=0.231  Sum_probs=108.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCcc-ccc-------------cCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCC
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRA-FKS-------------KAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSAD   85 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~-~~~-------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~   85 (225)
                      .+|+++|+.++|||||+++|+.... +..             .....+.|.......+.| .+..++||||||+.++.  
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~-~~~kinlIDTPGh~DF~--   78 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY-NGTKINIVDTPGHADFG--   78 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE-CCEEEEEEECCCHHHHH--
Confidence            5799999999999999999986432 111             011346777777788888 88999999999987542  


Q ss_pred             cHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcC
Q 036158           86 SEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGREC  165 (225)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~  165 (225)
                           ..+    ......+|++++|+|+.+.....++..+..+.+.     ..|+++++||+|....   ...+...+  
T Consensus        79 -----~ev----~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~-----~ip~IVviNKiD~~~a---~~~~v~~e--  139 (594)
T TIGR01394        79 -----GEV----ERVLGMVDGVLLLVDASEGPMPQTRFVLKKALEL-----GLKPIVVINKIDRPSA---RPDEVVDE--  139 (594)
T ss_pred             -----HHH----HHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC-----CCCEEEEEECCCCCCc---CHHHHHHH--
Confidence                 122    2334466999999999766666666666666552     3688999999997543   33333333  


Q ss_pred             CchHHHHHHHcCCcE--EEeeCCCccccccH----------HHHHHHHHHHHHHHHHcC
Q 036158          166 PKPLKEILQLCDNRC--VLFDNKTKDTAKRT----------EQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       166 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----------~~v~~l~~~i~~~~~~~~  212 (225)
                         +.+++..++..-  +.+ .....|+..+          .++..|++.|.+.++...
T Consensus       140 ---i~~l~~~~g~~~e~l~~-pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~  194 (594)
T TIGR01394       140 ---VFDLFAELGADDEQLDF-PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK  194 (594)
T ss_pred             ---HHHHHHhhccccccccC-cEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence               344443322110  000 1122233333          478999999988887653

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.67  E-value=8.2e-15  Score=110.85  Aligned_cols=166  Identities=14%  Similarity=0.082  Sum_probs=98.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      +..++|+++|.+|+|||||++++...... ..  ..++........+.+ ++  ..+.||||+|...+           .
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~-~~--~~pT~~~~~~~~~~~-~~~~~~l~iwDtaG~e~~-----------~   67 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFP-EN--YVPTVFENYTASFEI-DTQRIELSLWDTSGSPYY-----------D   67 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCC-Cc--cCCceeeeeEEEEEE-CCEEEEEEEEECCCchhh-----------H
Confidence            45689999999999999999999876532 21  111111111223344 33  37999999996422           2


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhh----cCCch
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR----ECPKP  168 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~----~~~~~  168 (225)
                      .....++.++|++|+|+|++++.+-..  ..++..+.+..+   ..|+++|.||.|+.... ....+....    -..+.
T Consensus        68 ~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~~~~-~~~~~~~~~~~~~v~~~~  143 (182)
T cd04172          68 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRTDL-TTLVELSNHRQTPVSYDQ  143 (182)
T ss_pred             hhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEeEChhhhcCh-hhHHHHHhcCCCCCCHHH
Confidence            233456788999999999985544333  234455555432   37999999999975421 111111000    01112


Q ss_pred             HHHHHHHcCC-cEEEeeCCCccccccHHH-HHHHHHHHHHH
Q 036158          169 LKEILQLCDN-RCVLFDNKTKDTAKRTEQ-VGKLLSLVNSV  207 (225)
Q Consensus       169 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-v~~l~~~i~~~  207 (225)
                      ..++.+..+. .|+      .+||+++.+ +++++..+.+.
T Consensus       144 ~~~~a~~~~~~~~~------E~SAk~~~n~v~~~F~~~~~~  178 (182)
T cd04172         144 GANMAKQIGAATYI------ECSALQSENSVRDIFHVATLA  178 (182)
T ss_pred             HHHHHHHcCCCEEE------ECCcCCCCCCHHHHHHHHHHH
Confidence            3444444442 222      446667787 99999887663

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04177 RSR1 RSR1 subgroup

Probab=99.67  E-value=4.8e-15  Score=110.64  Aligned_cols=157  Identities=17%  Similarity=0.149  Sum_probs=91.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      ++|+++|.+|+|||||++++.+...... .  ..++.........++ ....+.+|||||...+.           ....
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~-~--~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~~~   67 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIES-Y--DPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFT-----------AMRE   67 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcc-c--CCcchheEEEEEEECCEEEEEEEEeCCCcccch-----------hhhH
Confidence            6899999999999999999997664222 1  111111112223331 12478899999976542           1222


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      ..+..++++++|++.+++-+-.. ..+.+.+..... ....|++++.||.|.........++         ...+.+.++
T Consensus        68 ~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~---------~~~~~~~~~  137 (168)
T cd04177          68 LYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKD-SDNVPMVLVGNKADLEDDRQVSRED---------GVSLSQQWG  137 (168)
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCCEEEEEEChhccccCccCHHH---------HHHHHHHcC
Confidence            34456799999999874322222 223344443322 2347999999999976443111111         122333333


Q ss_pred             -CcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158          178 -NRCVLFDNKTKDTAKRTEQVGKLLSLVNS  206 (225)
Q Consensus       178 -~~~~~~~~~~~~~~~~~~~v~~l~~~i~~  206 (225)
                       ..+      ...||.++.+++++++.+..
T Consensus       138 ~~~~------~~~SA~~~~~i~~~f~~i~~  161 (168)
T cd04177         138 NVPF------YETSARKRTNVDEVFIDLVR  161 (168)
T ss_pred             CceE------EEeeCCCCCCHHHHHHHHHH
Confidence             222      23566677899999988864

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.67  E-value=5e-15  Score=111.03  Aligned_cols=162  Identities=19%  Similarity=0.110  Sum_probs=94.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158           22 LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (225)
Q Consensus        22 i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (225)
                      |+++|.+|+|||||++++.+.... ..  ...+........+.. ++.  .+.+|||||.....           .....
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~-~~--~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~~~~   65 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFP-ED--YVPTVFENYSADVEV-DGKPVELGLWDTAGQEDYD-----------RLRPL   65 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCC-CC--CCCcEEeeeeEEEEE-CCEEEEEEEEECCCCcccc-----------hhchh
Confidence            589999999999999999986642 21  111122222223344 333  68999999975432           11223


Q ss_pred             cCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhh----cCCchHHHHH
Q 036158          100 TKDGIHAVLVVFSVRNRFSEEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR----ECPKPLKEIL  173 (225)
Q Consensus       100 ~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~----~~~~~~~~~~  173 (225)
                      ....+|++|+|+|.+++.+-+.  ..++..+.+..   ...|+++|.||+|..... ...+++...    ...+...++.
T Consensus        66 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~~~  141 (174)
T smart00174       66 SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC---PNTPIILVGTKLDLREDK-STLRELSKQKQEPVTYEQGEALA  141 (174)
T ss_pred             hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEecChhhhhCh-hhhhhhhcccCCCccHHHHHHHH
Confidence            5668899999999974422222  12344444432   248999999999976532 122222111    0011123344


Q ss_pred             HHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          174 QLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       174 ~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                      +..+. .+      ...|+.++.+++++++.+.+.+
T Consensus       142 ~~~~~~~~------~e~Sa~~~~~v~~lf~~l~~~~  171 (174)
T smart00174      142 KRIGAVKY------LECSALTQEGVREVFEEAIRAA  171 (174)
T ss_pred             HHcCCcEE------EEecCCCCCCHHHHHHHHHHHh
Confidence            44443 22      2346677799999999887654

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04128 Spg1 Spg1p

Probab=99.67  E-value=8.2e-15  Score=110.91  Aligned_cols=163  Identities=12%  Similarity=0.062  Sum_probs=95.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      ++|+++|..|+|||||++++.+.... .. ..+..........+.. ++  ..+.+|||+|...+           ...+
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~-~~-~~~T~g~~~~~~~i~~-~~~~~~l~iwDt~G~~~~-----------~~~~   66 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFD-ED-YIQTLGVNFMEKTISI-RGTEITFSIWDLGGQREF-----------INML   66 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCC-CC-CCCccceEEEEEEEEE-CCEEEEEEEEeCCCchhH-----------HHhh
Confidence            47999999999999999999876532 21 1222222222234444 34  46899999996432           2333


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccccEEEEEecCCCCCCCcc-cHHHHhhhcCCchHHHHHHH
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEEG-AAIHILESLFGKKISDYMIVVFTGGDELEDNDE-TLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~  175 (225)
                      ..+...+|++++|+|++++.+..+. .+++.+.+...  ...| ++|.||+|+...... ..+....+     .+++.+.
T Consensus        67 ~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~--~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~-----~~~~a~~  138 (182)
T cd04128          67 PLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNK--TAIP-ILVGTKYDLFADLPPEEQEEITKQ-----ARKYAKA  138 (182)
T ss_pred             HHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCE-EEEEEchhccccccchhhhhhHHH-----HHHHHHH
Confidence            4567789999999999754333221 23333433221  1245 678999998642210 11111111     3334444


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      .+..+      ...||+++.+++++++.+.+.+.+
T Consensus       139 ~~~~~------~e~SAk~g~~v~~lf~~l~~~l~~  167 (182)
T cd04128         139 MKAPL------IFCSTSHSINVQKIFKIVLAKAFD  167 (182)
T ss_pred             cCCEE------EEEeCCCCCCHHHHHHHHHHHHHh
Confidence            44322      245667779999999998876654

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.67  E-value=1.7e-14  Score=112.85  Aligned_cols=171  Identities=14%  Similarity=0.036  Sum_probs=100.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ....+|+++|..|+|||||++++...... ... .+.. .......+.+ ++  ..+.||||+|...+           .
T Consensus        11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~-~~y-~pTi-~~~~~~~i~~-~~~~v~l~iwDTaG~e~~-----------~   75 (232)
T cd04174          11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYP-ETY-VPTV-FENYTAGLET-EEQRVELSLWDTSGSPYY-----------D   75 (232)
T ss_pred             eeeEEEEEECCCCCcHHHHHHHHhcCCCC-CCc-CCce-eeeeEEEEEE-CCEEEEEEEEeCCCchhh-----------H
Confidence            45689999999999999999999876532 211 1111 1111122333 33  37999999995422           2


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhh----hcCCch
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLG----RECPKP  168 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~----~~~~~~  168 (225)
                      .....++.++|++|+|+|++++.+-..  ..++..+.+..   ...|+++|.||.|+..... ...+...    .-..+.
T Consensus        76 ~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~---~~~piilVgNK~DL~~~~~-~~~~l~~~~~~~Vs~~e  151 (232)
T cd04174          76 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC---PSTRILLIGCKTDLRTDLS-TLMELSNQKQAPISYEQ  151 (232)
T ss_pred             HHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccccc-hhhhhccccCCcCCHHH
Confidence            233356789999999999985543332  23444454433   2378999999999753210 1111000    001112


Q ss_pred             HHHHHHHcCCcEEEeeCCCccccccHH-HHHHHHHHHHHHHHHc
Q 036158          169 LKEILQLCDNRCVLFDNKTKDTAKRTE-QVGKLLSLVNSVIVQN  211 (225)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~~i~~~~~~~  211 (225)
                      .+++.+..+.. .+    ..+||+++. ++++++..+.....+.
T Consensus       152 ~~~~a~~~~~~-~~----~EtSAktg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         152 GCALAKQLGAE-VY----LECSAFTSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             HHHHHHHcCCC-EE----EEccCCcCCcCHHHHHHHHHHHHHHh
Confidence            44555554532 11    245666666 7999999887765443

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PRK00049 elongation factor Tu; Reviewed

Probab=99.66  E-value=6.5e-15  Score=124.12  Aligned_cols=171  Identities=18%  Similarity=0.171  Sum_probs=110.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccc--------------cccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCC
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAF--------------KSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD   81 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (225)
                      .++.++|+++|+.++|||||+++|++....              .......+.|.......+.. ++..+.++||||+. 
T Consensus         9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~-   86 (396)
T PRK00049          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET-EKRHYAHVDCPGHA-   86 (396)
T ss_pred             CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC-CCeEEEEEECCCHH-
Confidence            467899999999999999999999973210              01112456777776666665 67789999999974 


Q ss_pred             CCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEE-EEEecCCCCCCCcccHHHH
Q 036158           82 SSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMI-VVFTGGDELEDNDETLEDY  160 (225)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-vv~~k~D~~~~~~~~~~~~  160 (225)
                                .+...+......+|++++|+|+.......+.+.+..+...     ..|.+ +++||+|..... ...+..
T Consensus        87 ----------~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~-----g~p~iiVvvNK~D~~~~~-~~~~~~  150 (396)
T PRK00049         87 ----------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-----GVPYIVVFLNKCDMVDDE-ELLELV  150 (396)
T ss_pred             ----------HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc-----CCCEEEEEEeecCCcchH-HHHHHH
Confidence                      2223333445688999999999877777777777776653     25655 689999986421 223333


Q ss_pred             hhhcCCchHHHHHHHcCC-----cEEEeeCCCcc--c--cccHHHHHHHHHHHHHHHH
Q 036158          161 LGRECPKPLKEILQLCDN-----RCVLFDNKTKD--T--AKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--~--~~~~~~v~~l~~~i~~~~~  209 (225)
                      ..+     +++++..++.     ++...+.....  +  ..-..++..|++.|.++++
T Consensus       151 ~~~-----i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~  203 (396)
T PRK00049        151 EME-----VRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP  203 (396)
T ss_pred             HHH-----HHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence            333     6667766543     33333332110  0  0111257889999988764

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.66  E-value=3.3e-15  Score=111.14  Aligned_cols=160  Identities=17%  Similarity=0.216  Sum_probs=90.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      +|+++|.+|+|||||+++++.......   ...++.........+ ++.  .+.+|||||......  .    ...    
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~--~----~~~----   66 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGE---YDPNLESLYSRQVTI-DGEQVSLEILDTAGQQQADT--E----QLE----   66 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccc---cCCChHHhceEEEEE-CCEEEEEEEEECCCCccccc--c----hHH----
Confidence            589999999999999999986543111   112121112222333 333  578999999874210  0    111    


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      .....+|++|+|+|+.++-+-.. ..++..+..........|+++|.||+|.........++         .....+..+
T Consensus        67 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~---------~~~~~~~~~  137 (165)
T cd04146          67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEE---------GEKLASELG  137 (165)
T ss_pred             HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHH---------HHHHHHHcC
Confidence            23346799999999974432222 23344555432112247999999999965432111111         233333444


Q ss_pred             CcEEEeeCCCccccccH-HHHHHHHHHHHHHHH
Q 036158          178 NRCVLFDNKTKDTAKRT-EQVGKLLSLVNSVIV  209 (225)
Q Consensus       178 ~~~~~~~~~~~~~~~~~-~~v~~l~~~i~~~~~  209 (225)
                      ..++      ..|+..+ .+++++++.+.+.+.
T Consensus       138 ~~~~------e~Sa~~~~~~v~~~f~~l~~~~~  164 (165)
T cd04146         138 CLFF------EVSAAEDYDGVHSVFHELCREVR  164 (165)
T ss_pred             CEEE------EeCCCCCchhHHHHHHHHHHHHh
Confidence            3322      3344455 489999999987654

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.66  E-value=5.2e-15  Score=108.24  Aligned_cols=154  Identities=19%  Similarity=0.214  Sum_probs=90.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      ++|+++|.+|+|||||+|+|++.. +.. ...++.+.......+.. ++  ..+.+|||||..+..    ....      
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~----~~~~------   68 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNK-FIT-EYKPGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYR----AIRR------   68 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC-CcC-cCCCCceeeeeEEEEEE-CCEEEEEEEEECCCcccch----HHHH------
Confidence            689999999999999999999887 333 23445555555544555 55  678999999965431    1111      


Q ss_pred             hhcCCCccEEEEEEeCCCC-CCHH--HHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           98 GMTKDGIHAVLVVFSVRNR-FSEE--EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~-~~~~--~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                       .....++.+++++|.... .+..  .......+......  ..|+++++||+|.....   ....        ....+.
T Consensus        69 -~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~---~~~~--------~~~~~~  134 (161)
T TIGR00231        69 -LYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRDAK---LKTH--------VAFLFA  134 (161)
T ss_pred             -HHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCcch---hhHH--------HHHHHh
Confidence             112234556666555422 1111  11233333333221  47999999999986542   1111        233333


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHH
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVN  205 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~  205 (225)
                      ..+..     ...+.++..+.++.++++.|.
T Consensus       135 ~~~~~-----~~~~~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231       135 KLNGE-----PIIPLSAETGKNIDSAFKIVE  160 (161)
T ss_pred             hccCC-----ceEEeecCCCCCHHHHHHHhh
Confidence            33321     133445567789999988874

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=6e-15  Score=108.88  Aligned_cols=167  Identities=17%  Similarity=0.176  Sum_probs=109.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      .-.++|+|+|.+|+|||=|+-++.+......  .......+.....+++ ++.  ++.||||.|.           ++++
T Consensus         7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~--~~sTIGVDf~~rt~e~-~gk~iKlQIWDTAGQ-----------ERFr   72 (205)
T KOG0084|consen    7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTES--YISTIGVDFKIRTVEL-DGKTIKLQIWDTAGQ-----------ERFR   72 (205)
T ss_pred             ceEEEEEEECCCCcChhhhhhhhccCCcchh--hcceeeeEEEEEEeee-cceEEEEEeeecccc-----------HHHh
Confidence            3458999999999999999999987775322  1222333444445555 443  8999999995           4566


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                      .....+++++|+||+|+|+++.-+-.. ..++..+.+....  ..|.++|.||+|+.+...-..++         .++..
T Consensus        73 tit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~--~v~~lLVGNK~Dl~~~~~v~~~~---------a~~fa  141 (205)
T KOG0084|consen   73 TITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASE--NVPKLLVGNKCDLTEKRVVSTEE---------AQEFA  141 (205)
T ss_pred             hhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccC--CCCeEEEeeccccHhheecCHHH---------HHHHH
Confidence            778889999999999999985422222 2233344443322  36899999999987554111111         23444


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG  213 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~  213 (225)
                      ...+.+.     ...+||+...++++.+..+...++....
T Consensus       142 ~~~~~~~-----f~ETSAK~~~NVe~~F~~la~~lk~~~~  176 (205)
T KOG0084|consen  142 DELGIPI-----FLETSAKDSTNVEDAFLTLAKELKQRKG  176 (205)
T ss_pred             HhcCCcc-----eeecccCCccCHHHHHHHHHHHHHHhcc
Confidence            4444432     2345666668999988888877766543

>PRK09866 hypothetical protein; Provisional

Probab=99.66  E-value=7e-15  Score=126.75  Aligned_cols=121  Identities=12%  Similarity=0.054  Sum_probs=77.6

Q ss_pred             ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 036158           69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGD  148 (225)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D  148 (225)
                      ..++|+||||+....  ...+.+.+.+    ....+|+|+||+|+....+..+..+++.+++.- .  ..|+++|+||+|
T Consensus       230 ~QIIFVDTPGIhk~~--~~~L~k~M~e----qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~-K--~~PVILVVNKID  300 (741)
T PRK09866        230 GQLTLLDTPGPNEAG--QPHLQKMLNQ----QLARASAVLAVLDYTQLKSISDEEVREAILAVG-Q--SVPLYVLVNKFD  300 (741)
T ss_pred             CCEEEEECCCCCCcc--chHHHHHHHH----HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcC-C--CCCEEEEEEccc
Confidence            468999999998542  1223333333    455679999999998667888888888877631 1  149999999999


Q ss_pred             CCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158          149 ELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNS  206 (225)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~  206 (225)
                      .........+.....     +...+...+.   .+....+.||..+.++++|++.|.+
T Consensus       301 l~dreeddkE~Lle~-----V~~~L~q~~i---~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        301 QQDRNSDDADQVRAL-----ISGTLMKGCI---TPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             CCCcccchHHHHHHH-----HHHHHHhcCC---CCceEEEEeCCCCCCHHHHHHHHHh
Confidence            864322122222222     2223222222   2445566777888999999998854

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=1.6e-15  Score=111.49  Aligned_cols=166  Identities=18%  Similarity=0.197  Sum_probs=103.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      ..++|+|+|.+|+|||||+-++.............+.....+...+.- ...++.+|||.|...+           ....
T Consensus         4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~-~~ikfeIWDTAGQERy-----------~sla   71 (200)
T KOG0092|consen    4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDD-NTIKFEIWDTAGQERY-----------HSLA   71 (200)
T ss_pred             ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCC-cEEEEEEEEcCCcccc-----------cccc
Confidence            458999999999999999988886654222222223222222222211 2347889999997633           3444


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc-ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK-ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      .+++++++++|+|+|+++.  ....+.-.|++++...- ...-+.+|.||+|+.+..+...++         .+...+..
T Consensus        72 pMYyRgA~AAivvYDit~~--~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~e---------a~~yAe~~  140 (200)
T KOG0092|consen   72 PMYYRGANAAIVVYDITDE--ESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEE---------AQAYAESQ  140 (200)
T ss_pred             cceecCCcEEEEEEecccH--HHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHH---------HHHHHHhc
Confidence            5789999999999999843  22333444555543221 123456699999988754233332         23444443


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                      +.  ..|    .+|++++.++++++..|.+.+.+..
T Consensus       141 gl--l~~----ETSAKTg~Nv~~if~~Ia~~lp~~~  170 (200)
T KOG0092|consen  141 GL--LFF----ETSAKTGENVNEIFQAIAEKLPCSD  170 (200)
T ss_pred             CC--EEE----EEecccccCHHHHHHHHHHhccCcc
Confidence            33  222    4566778999999999988876653

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.66  E-value=4.9e-15  Score=112.72  Aligned_cols=156  Identities=19%  Similarity=0.241  Sum_probs=107.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCC-----CCCceeEEEEEEEEeeCCc---eEEEEeCCCCCCCCCCcHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAG-----SSGVTKTCEMQRTMLKDGQ---VVNVIDTPGLFDSSADSEFVS   90 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~-----~~~~t~~~~~~~~~~~~~~---~~~liDtPG~~~~~~~~~~~~   90 (225)
                      .++|.|+|.+|.|||||+|.|+...+..+...     +...|++.....-.+.+++   +++++|||||+|.. +++.-|
T Consensus        46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqI-nN~ncW  124 (336)
T KOG1547|consen   46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQI-NNDNCW  124 (336)
T ss_pred             ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCccccc-Cccchh
Confidence            58999999999999999999987665442211     2234544444433332332   89999999999874 343344


Q ss_pred             HHHHHHHhh------------------cCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158           91 KEIVKCIGM------------------TKDGIHAVLVVFSVR-NRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELE  151 (225)
Q Consensus        91 ~~~~~~~~~------------------~~~~~~~ii~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~  151 (225)
                      +-+..++..                  ..-++|.++|.++.+ +.+...|.+.++.|.+.      .+++.|+.|+|.+.
T Consensus       125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v------vNvvPVIakaDtlT  198 (336)
T KOG1547|consen  125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV------VNVVPVIAKADTLT  198 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh------heeeeeEeeccccc
Confidence            444433321                  124679999999774 56888899999988886      79999999999775


Q ss_pred             CCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCc
Q 036158          152 DNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTK  188 (225)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (225)
                      -+  .-.++.++     +++-++..++.+++.+....
T Consensus       199 le--Er~~Fkqr-----I~~el~~~~i~vYPq~~fde  228 (336)
T KOG1547|consen  199 LE--ERSAFKQR-----IRKELEKHGIDVYPQDSFDE  228 (336)
T ss_pred             HH--HHHHHHHH-----HHHHHHhcCccccccccccc
Confidence            53  44555555     77777788887776655433

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.66  E-value=7.5e-16  Score=110.08  Aligned_cols=141  Identities=23%  Similarity=0.293  Sum_probs=90.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (225)
                      .||+|+|++|||||||+++|.+...      ....|....     + .+   .+|||||-+-   .+.    .+..++..
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~~------~~~KTq~i~-----~-~~---~~IDTPGEyi---E~~----~~y~aLi~   59 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEEI------RYKKTQAIE-----Y-YD---NTIDTPGEYI---ENP----RFYHALIV   59 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCCC------CcCccceeE-----e-cc---cEEECChhhe---eCH----HHHHHHHH
Confidence            4899999999999999999998764      112233322     2 11   2599999652   122    33444444


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc
Q 036158          100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR  179 (225)
Q Consensus       100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (225)
                      ....+|++++|.|++++...--..+.    ..|    .+|++-|+||+|...+. ..++.         .++.++..|..
T Consensus        60 ta~dad~V~ll~dat~~~~~~pP~fa----~~f----~~pvIGVITK~Dl~~~~-~~i~~---------a~~~L~~aG~~  121 (143)
T PF10662_consen   60 TAQDADVVLLLQDATEPRSVFPPGFA----SMF----NKPVIGVITKIDLPSDD-ANIER---------AKKWLKNAGVK  121 (143)
T ss_pred             HHhhCCEEEEEecCCCCCccCCchhh----ccc----CCCEEEEEECccCccch-hhHHH---------HHHHHHHcCCC
Confidence            55588999999999854322111222    222    37999999999987332 22222         46677777765


Q ss_pred             EEEeeCCCccccccHHHHHHHHHHHH
Q 036158          180 CVLFDNKTKDTAKRTEQVGKLLSLVN  205 (225)
Q Consensus       180 ~~~~~~~~~~~~~~~~~v~~l~~~i~  205 (225)
                      ..     ...|+.++.++++|.++|.
T Consensus       122 ~i-----f~vS~~~~eGi~eL~~~L~  142 (143)
T PF10662_consen  122 EI-----FEVSAVTGEGIEELKDYLE  142 (143)
T ss_pred             Ce-----EEEECCCCcCHHHHHHHHh
Confidence            33     2334456699999999885

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.66  E-value=1.9e-15  Score=109.69  Aligned_cols=140  Identities=19%  Similarity=0.283  Sum_probs=84.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT  100 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (225)
                      +|+++|.+|+|||||+|++.+....      ...|..     ..+ ..   .+|||||....       ...+.+.+...
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~------~~~t~~-----~~~-~~---~~iDt~G~~~~-------~~~~~~~~~~~   59 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL------YKKTQA-----VEY-ND---GAIDTPGEYVE-------NRRLYSALIVT   59 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc------ccccee-----EEE-cC---eeecCchhhhh-------hHHHHHHHHHH
Confidence            7999999999999999999987631      112221     223 22   58999996311       11222222234


Q ss_pred             CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcE
Q 036158          101 KDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC  180 (225)
Q Consensus       101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (225)
                      +.++|++++|+|++++.+.....+++    .+    ..|+++|+||+|+.+.. ...+    +     ..+.++..+.. 
T Consensus        60 ~~~ad~vilv~d~~~~~s~~~~~~~~----~~----~~p~ilv~NK~Dl~~~~-~~~~----~-----~~~~~~~~~~~-  120 (142)
T TIGR02528        60 AADADVIALVQSATDPESRFPPGFAS----IF----VKPVIGLVTKIDLAEAD-VDIE----R-----AKELLETAGAE-  120 (142)
T ss_pred             hhcCCEEEEEecCCCCCcCCChhHHH----hc----cCCeEEEEEeeccCCcc-cCHH----H-----HHHHHHHcCCC-
Confidence            67899999999997555443322222    12    14899999999976422 1111    1     23344443321 


Q ss_pred             EEeeCCCccccccHHHHHHHHHHHH
Q 036158          181 VLFDNKTKDTAKRTEQVGKLLSLVN  205 (225)
Q Consensus       181 ~~~~~~~~~~~~~~~~v~~l~~~i~  205 (225)
                          .....|+.++.+++++++.+.
T Consensus       121 ----~~~~~Sa~~~~gi~~l~~~l~  141 (142)
T TIGR02528       121 ----PIFEISSVDEQGLEALVDYLN  141 (142)
T ss_pred             ----cEEEEecCCCCCHHHHHHHHh
Confidence                112345667789999998773

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.66  E-value=9.1e-16  Score=131.70  Aligned_cols=145  Identities=12%  Similarity=0.162  Sum_probs=94.6

Q ss_pred             CCCCCCCceeEEEEcCCCCCHHHHHHHHhCCcccccc-------------------------------CCCCCceeEEEE
Q 036158           12 PTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSK-------------------------------AGSSGVTKTCEM   60 (225)
Q Consensus        12 ~~~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~-------------------------------~~~~~~t~~~~~   60 (225)
                      ..+...+.++|+++|+.++|||||+++|+........                               ....+.|.+...
T Consensus        20 ~~~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~   99 (474)
T PRK05124         20 HAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAY   99 (474)
T ss_pred             hhccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeE
Confidence            3455678899999999999999999999855421110                               012346677777


Q ss_pred             EEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccE
Q 036158           61 QRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYM  140 (225)
Q Consensus        61 ~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  140 (225)
                      ..+.+ ++..+.|+||||+.++       ...+.    .....+|++++|+|+.......+.+.+..+.. ++.   +++
T Consensus       100 ~~~~~-~~~~i~~iDTPGh~~f-------~~~~~----~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~-lg~---~~i  163 (474)
T PRK05124        100 RYFST-EKRKFIIADTPGHEQY-------TRNMA----TGASTCDLAILLIDARKGVLDQTRRHSFIATL-LGI---KHL  163 (474)
T ss_pred             EEecc-CCcEEEEEECCCcHHH-------HHHHH----HHHhhCCEEEEEEECCCCccccchHHHHHHHH-hCC---Cce
Confidence            77777 7789999999996432       12222    22357799999999986665555554444433 222   578


Q ss_pred             EEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158          141 IVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus       141 ~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      ++++||+|........+++...+     +..++..++
T Consensus       164 IvvvNKiD~~~~~~~~~~~i~~~-----l~~~~~~~~  195 (474)
T PRK05124        164 VVAVNKMDLVDYSEEVFERIRED-----YLTFAEQLP  195 (474)
T ss_pred             EEEEEeeccccchhHHHHHHHHH-----HHHHHHhcC
Confidence            99999999864332234444333     455554443

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.66  E-value=2.2e-14  Score=108.23  Aligned_cols=165  Identities=19%  Similarity=0.196  Sum_probs=95.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      .+|+++|.+|+|||||++++++......   ..+++.........+ .+  ..+.+|||||..+.           ....
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~-----------~~~~   66 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVES---YYPTIENTFSKIIRY-KGQDYHLEIVDTAGQDEY-----------SILP   66 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccc---cCcchhhhEEEEEEE-CCEEEEEEEEECCChHhh-----------HHHH
Confidence            6899999999999999999997663211   111121111222333 33  35789999997532           1222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      ......+|++++|++.++..+... ..++..+..... ....|++++.||+|..........+         ...+.+..
T Consensus        67 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~~~~~~~---------~~~~~~~~  136 (180)
T cd04137          67 QKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLG-KESVPIVLVGNKSDLHTQRQVSTEE---------GKELAESW  136 (180)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEchhhhhcCccCHHH---------HHHHHHHc
Confidence            234456799999999874322222 222233333221 1246999999999976432111111         22333333


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCC
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQP  215 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~  215 (225)
                      +..+.      +.|+.++.++.+++..+.+.+.......
T Consensus       137 ~~~~~------~~Sa~~~~gv~~l~~~l~~~~~~~~~~~  169 (180)
T cd04137         137 GAAFL------ESSARENENVEEAFELLIEEIEKVENPL  169 (180)
T ss_pred             CCeEE------EEeCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence            43222      3455667899999999988777665443

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04131 Rnd Rnd subfamily

Probab=99.65  E-value=2.4e-14  Score=107.95  Aligned_cols=164  Identities=14%  Similarity=0.067  Sum_probs=95.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      .+|+++|.+|+|||||++++.+... ...  ..++........+.+ ++  ..+.+|||||...+           ....
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f-~~~--~~~t~~~~~~~~~~~-~~~~~~l~iwDt~G~~~~-----------~~~~   66 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCY-PET--YVPTVFENYTASFEI-DEQRIELSLWDTSGSPYY-----------DNVR   66 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcC-CCC--cCCceEEEEEEEEEE-CCEEEEEEEEECCCchhh-----------hhcc
Confidence            6899999999999999999997653 221  111111111223344 33  37889999996432           1222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhh----cCCchHHH
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR----ECPKPLKE  171 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~----~~~~~~~~  171 (225)
                      ..++..+|++|+|+|.+++.+-..  ..++..+++..+   ..|+++|.||.|+.+.. ....+....    -..+..++
T Consensus        67 ~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~---~~~iilVgnK~DL~~~~-~~~~~~~~~~~~~v~~~e~~~  142 (178)
T cd04131          67 PLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP---NTKVLLVGCKTDLRTDL-STLMELSHQRQAPVSYEQGCA  142 (178)
T ss_pred             hhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC---CCCEEEEEEChhhhcCh-hHHHHHHhcCCCCCCHHHHHH
Confidence            346778999999999985544433  234455555432   37999999999975421 111111000    01112344


Q ss_pred             HHHHcCCcEEEeeCCCccccccHHH-HHHHHHHHHHH
Q 036158          172 ILQLCDNRCVLFDNKTKDTAKRTEQ-VGKLLSLVNSV  207 (225)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~-v~~l~~~i~~~  207 (225)
                      +.+..+.. .++    .+||.++.+ +++++..+.+.
T Consensus       143 ~a~~~~~~-~~~----E~SA~~~~~~v~~~F~~~~~~  174 (178)
T cd04131         143 IAKQLGAE-IYL----ECSAFTSEKSVRDIFHVATMA  174 (178)
T ss_pred             HHHHhCCC-EEE----ECccCcCCcCHHHHHHHHHHH
Confidence            44444421 122    445666675 99999888664

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.65  E-value=2.2e-15  Score=113.03  Aligned_cols=165  Identities=16%  Similarity=0.133  Sum_probs=93.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      .+|+++|.+|+|||||++++.+......   ..++........+.+ ++  ..+.+|||||..+..           ...
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~~   66 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEV---YVPTVFENYVADIEV-DGKQVELALWDTAGQEDYD-----------RLR   66 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCC---CCCccccceEEEEEE-CCEEEEEEEEeCCCchhhh-----------hcc
Confidence            5899999999999999999997653211   111111111223344 33  368999999975331           111


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhc-C---CchHHH
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRE-C---PKPLKE  171 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~-~---~~~~~~  171 (225)
                      ......+|++++|++++++.+...  ..++..+.+..   ...|+++|.||+|+.+.. ...++..... .   ....++
T Consensus        67 ~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~-~~~~~i~~~~~~~v~~~~~~~  142 (175)
T cd01870          67 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDE-HTRRELAKMKQEPVKPEEGRD  142 (175)
T ss_pred             ccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhcccCh-hhhhhhhhccCCCccHHHHHH
Confidence            234568899999999974422222  12333333322   247999999999976432 1111111100 0   011233


Q ss_pred             HHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          172 ILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                      +...++..     .....||..+.+++++++.+.+.+
T Consensus       143 ~~~~~~~~-----~~~~~Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         143 MANKIGAF-----GYMECSAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             HHHHcCCc-----EEEEeccccCcCHHHHHHHHHHHh
Confidence            33333321     112456677799999999987643

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.65  E-value=7.7e-15  Score=123.72  Aligned_cols=172  Identities=18%  Similarity=0.212  Sum_probs=105.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCc------cc--------cccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCC
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKR------AF--------KSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD   81 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~------~~--------~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (225)
                      .++.++|+++|+.++|||||+++|++..      .+        .......+.|.......+.. ++..+.||||||+.+
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~~   87 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHAD   87 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-CCEEEEEEECCchHH
Confidence            5778999999999999999999998431      00        01112356777766555555 567899999999753


Q ss_pred             CCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHh
Q 036158           82 SSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL  161 (225)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~  161 (225)
                      +       ...+    ......+|++++|+|+.+.....+.+.+..+... +   .+++++++||+|+.... ...+...
T Consensus        88 f-------~~~~----~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~-g---i~~iIvvvNK~Dl~~~~-~~~~~~~  151 (394)
T TIGR00485        88 Y-------VKNM----ITGAAQMDGAILVVSATDGPMPQTREHILLARQV-G---VPYIVVFLNKCDMVDDE-ELLELVE  151 (394)
T ss_pred             H-------HHHH----HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-C---CCEEEEEEEecccCCHH-HHHHHHH
Confidence            2       1222    2233477999999999866777777777776553 1   13455789999976432 1222222


Q ss_pred             hhcCCchHHHHHHHcCC-----cEEEeeCCCcc--ccccHHHHHHHHHHHHHHHH
Q 036158          162 GRECPKPLKEILQLCDN-----RCVLFDNKTKD--TAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       162 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~~v~~l~~~i~~~~~  209 (225)
                      .+     ++++++..+.     +++..++....  ...-..++.+|++.+.++.+
T Consensus       152 ~~-----i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~  201 (394)
T TIGR00485       152 ME-----VRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIP  201 (394)
T ss_pred             HH-----HHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCC
Confidence            23     5666666653     22222222110  01111346778888876653

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.65  E-value=6.6e-16  Score=126.89  Aligned_cols=178  Identities=19%  Similarity=0.151  Sum_probs=97.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCC---ceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSG---VTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEI   93 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (225)
                      +..++|+|+|.+|+|||||||+|.|-..-.......+   +|.....|  ..|.-.++++||.||.+....+.+++.+++
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y--~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~  110 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPY--PHPKFPNVTLWDLPGIGTPNFPPEEYLKEV  110 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEE--E-SS-TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeC--CCCCCCCCeEEeCCCCCCCCCCHHHHHHHc
Confidence            3468999999999999999999987543323232332   33444333  344566899999999986655555444432


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC-------CCCcccHHHHhhhcCC
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDEL-------EDNDETLEDYLGRECP  166 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~-------~~~~~~~~~~~~~~~~  166 (225)
                            .....|.||+|.+ . +++..+.++...+++.     .+++++|-||+|.-       .+..-.-++.+++ ++
T Consensus       111 ------~~~~yD~fiii~s-~-rf~~ndv~La~~i~~~-----gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~-IR  176 (376)
T PF05049_consen  111 ------KFYRYDFFIIISS-E-RFTENDVQLAKEIQRM-----GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQE-IR  176 (376)
T ss_dssp             ------TGGG-SEEEEEES-S-S--HHHHHHHHHHHHT-----T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHH-HH
T ss_pred             ------cccccCEEEEEeC-C-CCchhhHHHHHHHHHc-----CCcEEEEEecccccHhhhhccCCcccCHHHHHHH-HH
Confidence                  2335588777655 3 8899999999888874     48999999999951       1111112223333 22


Q ss_pred             chHHHHHHHcCC---cEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCC
Q 036158          167 KPLKEILQLCDN---RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQ  214 (225)
Q Consensus       167 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~  214 (225)
                      +...+-++..+.   +++.+++....    ......|.+.+.+-++.+.++
T Consensus       177 ~~c~~~L~k~gv~~P~VFLVS~~dl~----~yDFp~L~~tL~~dLp~~Kr~  223 (376)
T PF05049_consen  177 ENCLENLQKAGVSEPQVFLVSSFDLS----KYDFPKLEETLEKDLPAHKRH  223 (376)
T ss_dssp             HHHHHHHHCTT-SS--EEEB-TTTTT----STTHHHHHHHHHHHS-GGGHH
T ss_pred             HHHHHHHHHcCCCcCceEEEeCCCcc----cCChHHHHHHHHHHhHHHHHH
Confidence            333444444332   45556665433    367888888888777666554

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.65  E-value=2.9e-15  Score=130.96  Aligned_cols=115  Identities=17%  Similarity=0.219  Sum_probs=76.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-----------------CCceEEEEeCCCCCC
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-----------------DGQVVNVIDTPGLFD   81 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~liDtPG~~~   81 (225)
                      .+.|+++|++|+|||||+|+|.+.......  ..+.|.+.....+.++                 ....+.||||||+..
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e--~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~   81 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKRE--AGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA   81 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcccccccc--CCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence            467999999999999999999988653221  2223332222222110                 012489999999754


Q ss_pred             CCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158           82 SSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELE  151 (225)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~  151 (225)
                      +           ..........+|++++|+|+++.....+.+.+..+...     ..|+++++||+|...
T Consensus        82 f-----------~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~-----~vpiIVv~NK~Dl~~  135 (590)
T TIGR00491        82 F-----------TNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY-----KTPFVVAANKIDRIP  135 (590)
T ss_pred             H-----------HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc-----CCCEEEEEECCCccc
Confidence            3           12222345578999999999876766676666665442     379999999999864

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.65  E-value=2.2e-14  Score=102.68  Aligned_cols=143  Identities=17%  Similarity=0.217  Sum_probs=102.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      .+++|+++|..|+||||+++.+++...     ....+|...+....++ ++..+++||..|.           ..++.+|
T Consensus        15 rE~riLiLGLdNsGKTti~~kl~~~~~-----~~i~pt~gf~Iktl~~-~~~~L~iwDvGGq-----------~~lr~~W   77 (185)
T KOG0073|consen   15 REVRILILGLDNSGKTTIVKKLLGEDT-----DTISPTLGFQIKTLEY-KGYTLNIWDVGGQ-----------KTLRSYW   77 (185)
T ss_pred             heeEEEEEecCCCCchhHHHHhcCCCc-----cccCCccceeeEEEEe-cceEEEEEEcCCc-----------chhHHHH
Confidence            479999999999999999999999873     3556788888889988 8999999999994           3567788


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc-c-ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK-K-ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      ..++...|++|||+|..++..-.  +....+++.+.+ + ...|++++.||.|....-  ..++....   ..+.++...
T Consensus        78 ~nYfestdglIwvvDssD~~r~~--e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l--~~~~i~~~---~~L~~l~ks  150 (185)
T KOG0073|consen   78 KNYFESTDGLIWVVDSSDRMRMQ--ECKQELTELLVEERLAGAPLLVLANKQDLPGAL--SLEEISKA---LDLEELAKS  150 (185)
T ss_pred             HHhhhccCeEEEEEECchHHHHH--HHHHHHHHHHhhhhhcCCceEEEEecCcCcccc--CHHHHHHh---hCHHHhccc
Confidence            88888999999999986443222  233344444333 2 346999999999976433  33332211   225667666


Q ss_pred             cCCcEEEee
Q 036158          176 CDNRCVLFD  184 (225)
Q Consensus       176 ~~~~~~~~~  184 (225)
                      +.++.....
T Consensus       151 ~~~~l~~cs  159 (185)
T KOG0073|consen  151 HHWRLVKCS  159 (185)
T ss_pred             cCceEEEEe
Confidence            666655443

>cd04133 Rop_like Rop subfamily

Probab=99.65  E-value=3.5e-14  Score=106.81  Aligned_cols=167  Identities=16%  Similarity=0.095  Sum_probs=98.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      ++|+++|.+|+|||||+.++..... ....  ..+........+.. ++  ..+.+|||+|...+.           ...
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f-~~~~--~~Ti~~~~~~~~~~-~~~~v~l~i~Dt~G~~~~~-----------~~~   66 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKF-PTDY--IPTVFDNFSANVSV-DGNTVNLGLWDTAGQEDYN-----------RLR   66 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCC-CCCC--CCcceeeeEEEEEE-CCEEEEEEEEECCCCcccc-----------ccc
Confidence            5799999999999999999997653 2211  11111112223333 33  478999999976442           222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHh-hhcCCchHHHHHH
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL-GRECPKPLKEILQ  174 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~-~~~~~~~~~~~~~  174 (225)
                      ..++..+|++|+|+|.+++.+-...  .++..++...   ...|+++|.||+|+.+.......+.. .....+..+++.+
T Consensus        67 ~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~  143 (176)
T cd04133          67 PLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA---PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRK  143 (176)
T ss_pred             hhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHH
Confidence            3466789999999999855444332  3444444432   24799999999998543200000000 0001111334444


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      ..+.. .++    .+||+.+.++++++..+.+++.
T Consensus       144 ~~~~~-~~~----E~SAk~~~nV~~~F~~~~~~~~  173 (176)
T cd04133         144 QIGAA-AYI----ECSSKTQQNVKAVFDAAIKVVL  173 (176)
T ss_pred             HcCCC-EEE----ECCCCcccCHHHHHHHHHHHHh
Confidence            43321 122    4566777999999999988763

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.65  E-value=2.8e-15  Score=127.73  Aligned_cols=170  Identities=18%  Similarity=0.221  Sum_probs=104.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCcccc-----------------------------ccCCCCCceeEEEEEEEEee
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFK-----------------------------SKAGSSGVTKTCEMQRTMLK   66 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~   66 (225)
                      .++.++|+++|+.++|||||+++|+......                             ......+.|.+.....+.+ 
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~-   82 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET-   82 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-
Confidence            4667999999999999999999998532110                             0112346788887777877 


Q ss_pred             CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCC---CCHHHHHHHHHHHHHhcccccccEEEE
Q 036158           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNR---FSEEEGAAIHILESLFGKKISDYMIVV  143 (225)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~vv  143 (225)
                      ++..+.||||||+.+           +...+......+|++++|+|+.++   ......+.+.... .++   ..+++++
T Consensus        83 ~~~~i~iiDtpGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~-~~~---~~~iIVv  147 (426)
T TIGR00483        83 DKYEVTIVDCPGHRD-----------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLAR-TLG---INQLIVA  147 (426)
T ss_pred             CCeEEEEEECCCHHH-----------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHH-HcC---CCeEEEE
Confidence            778999999999642           222222344578999999999765   2222223222222 222   2578999


Q ss_pred             EecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHH------------HHHHHHHHH
Q 036158          144 FTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVG------------KLLSLVNSV  207 (225)
Q Consensus       144 ~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~------------~l~~~i~~~  207 (225)
                      +||+|+.......++....+     ++++++..+..... -...+.|+.++.++.            .|++.|..+
T Consensus       148 iNK~Dl~~~~~~~~~~~~~e-----i~~~~~~~g~~~~~-~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~~~  217 (426)
T TIGR00483       148 INKMDSVNYDEEEFEAIKKE-----VSNLIKKVGYNPDT-VPFIPISAWNGDNVIKKSENTPWYKGKTLLEALDAL  217 (426)
T ss_pred             EEChhccCccHHHHHHHHHH-----HHHHHHHcCCCccc-ceEEEeeccccccccccccCCccccchHHHHHHhcC
Confidence            99999864332234344444     66677666532100 011234455556665            477777653

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd04169 RF3 RF3 subfamily

Probab=99.65  E-value=1.1e-14  Score=116.44  Aligned_cols=117  Identities=16%  Similarity=0.225  Sum_probs=79.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccC--------------------CCCCceeEEEEEEEEeeCCceEEEEeCCC
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKA--------------------GSSGVTKTCEMQRTMLKDGQVVNVIDTPG   78 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~--------------------~~~~~t~~~~~~~~~~~~~~~~~liDtPG   78 (225)
                      ..+|+++|+.|+|||||+++|+.........                    ...+.+.......+++ .+..+.+|||||
T Consensus         2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~-~~~~i~liDTPG   80 (267)
T cd04169           2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-RDCVINLLDTPG   80 (267)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee-CCEEEEEEECCC
Confidence            3689999999999999999998543211100                    0123444555567788 788999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158           79 LFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED  152 (225)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~  152 (225)
                      +.++.       .....    ....+|++|+|+|+..........+++....     ...|+++++||+|....
T Consensus        81 ~~df~-------~~~~~----~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~-----~~~P~iivvNK~D~~~a  138 (267)
T cd04169          81 HEDFS-------EDTYR----TLTAVDSAVMVIDAAKGVEPQTRKLFEVCRL-----RGIPIITFINKLDREGR  138 (267)
T ss_pred             chHHH-------HHHHH----HHHHCCEEEEEEECCCCccHHHHHHHHHHHh-----cCCCEEEEEECCccCCC
Confidence            86542       11222    2346799999999976666555555544332     23789999999997654

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.64  E-value=3e-14  Score=109.24  Aligned_cols=172  Identities=15%  Similarity=0.118  Sum_probs=99.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEE--EEEEEee------CCceEEEEeCCCCCCCCCCcHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCE--MQRTMLK------DGQVVNVIDTPGLFDSSADSEFVSK   91 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~------~~~~~~liDtPG~~~~~~~~~~~~~   91 (225)
                      ++|+++|.+|+|||||++.+.+......    ...|..+.  .....++      ....+.||||+|...+         
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~----~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~---------   67 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGR----PSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESV---------   67 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCC----CCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhH---------
Confidence            4799999999999999999998764322    12232222  2223331      1236899999996532         


Q ss_pred             HHHHHHhhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhc-----------------ccccccEEEEEecCCCCCCC
Q 036158           92 EIVKCIGMTKDGIHAVLVVFSVRNRFSEEEG-AAIHILESLFG-----------------KKISDYMIVVFTGGDELEDN  153 (225)
Q Consensus        92 ~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~-~~~~~l~~~~~-----------------~~~~~~~~vv~~k~D~~~~~  153 (225)
                        ......++.++|++|+|+|.+++-+.+.. .++..+.....                 .....|+++|.||.|+....
T Consensus        68 --~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r  145 (202)
T cd04102          68 --KSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK  145 (202)
T ss_pred             --HHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhc
Confidence              23334567789999999999855333322 23333332110                 11246999999999976542


Q ss_pred             cccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCc-cccccHHHHHHHHHHHHHHHHHc
Q 036158          154 DETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTK-DTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ...-+....+     ...+.++++......+-.-. .-+...++...|...+..++..+
T Consensus       146 ~~~~~~~~~~-----~~~ia~~~~~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (202)
T cd04102         146 ESSGNLVLTA-----RGFVAEQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIEKR  199 (202)
T ss_pred             ccchHHHhhH-----hhhHHHhcCCceEEEecCCcccccCCCccHHHHHHHHHHHHHhh
Confidence            1122222222     45666778877655443211 11223345666777666666543

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PRK10218 GTP-binding protein; Provisional

Probab=99.64  E-value=8.7e-15  Score=128.35  Aligned_cols=164  Identities=16%  Similarity=0.172  Sum_probs=108.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc-ccc-------------cCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA-FKS-------------KAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS   83 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~-~~~-------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~   83 (225)
                      ...+|+++|+.++|||||+++|+.... +..             .....+.|.......+.+ ++..+++|||||+.++.
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~-~~~~inliDTPG~~df~   82 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW-NDYRINIVDTPGHADFG   82 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec-CCEEEEEEECCCcchhH
Confidence            457899999999999999999996432 111             112346677777777788 78899999999987652


Q ss_pred             CCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhh
Q 036158           84 ADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR  163 (225)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~  163 (225)
                             ..    +..+...+|++|+|+|+.++....+...+..+.+.     ..|.++++||+|....   ..++.+.+
T Consensus        83 -------~~----v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~-----gip~IVviNKiD~~~a---~~~~vl~e  143 (607)
T PRK10218         83 -------GE----VERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY-----GLKPIVVINKVDRPGA---RPDWVVDQ  143 (607)
T ss_pred             -------HH----HHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHc-----CCCEEEEEECcCCCCC---chhHHHHH
Confidence                   11    22344567999999999766666666666655442     3688999999997643   33344333


Q ss_pred             cCCchHHHHHHHcC-------CcEEEeeCCCccccccHH----------HHHHHHHHHHHHHHHcC
Q 036158          164 ECPKPLKEILQLCD-------NRCVLFDNKTKDTAKRTE----------QVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       164 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~----------~v~~l~~~i~~~~~~~~  212 (225)
                           +.+++..++       .+++.      .|+.++.          ++..|++.|.+.++...
T Consensus       144 -----i~~l~~~l~~~~~~~~~PVi~------~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~  198 (607)
T PRK10218        144 -----VFDLFVNLDATDEQLDFPIVY------ASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD  198 (607)
T ss_pred             -----HHHHHhccCccccccCCCEEE------eEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence                 344432221       12222      2333333          68899998888877653

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=1.1e-14  Score=107.38  Aligned_cols=166  Identities=14%  Similarity=0.159  Sum_probs=110.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEI   93 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~   93 (225)
                      +....+|+++|..++||||||+.+..... .. ........+.....+.+ .++  .+.||||+|.           +.+
T Consensus        19 ~~k~~KlVflGdqsVGKTslItRf~yd~f-d~-~YqATIGiDFlskt~~l-~d~~vrLQlWDTAGQ-----------ERF   84 (221)
T KOG0094|consen   19 PLKKYKLVFLGDQSVGKTSLITRFMYDKF-DN-TYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQ-----------ERF   84 (221)
T ss_pred             cceEEEEEEEccCccchHHHHHHHHHhhh-cc-cccceeeeEEEEEEEEE-cCcEEEEEEEecccH-----------HHH
Confidence            34458999999999999999999986553 22 12333333444444455 444  7899999994           567


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI  172 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (225)
                      +..+..+++++.++|+|+|+.++-+-+. ..+++.+....+.+ ...+++|.||.|+....+-+.++-.         ..
T Consensus        85 rslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~-~viI~LVGnKtDL~dkrqvs~eEg~---------~k  154 (221)
T KOG0094|consen   85 RSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSD-DVIIFLVGNKTDLSDKRQVSIEEGE---------RK  154 (221)
T ss_pred             hhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCC-ceEEEEEcccccccchhhhhHHHHH---------HH
Confidence            7788889999999999999986544443 34555444433332 2678889999999876533333221         22


Q ss_pred             HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          173 LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      .++.+.  .++    .+|++.+.+|.+|+.+|...+.+.
T Consensus       155 Akel~a--~f~----etsak~g~NVk~lFrrIaa~l~~~  187 (221)
T KOG0094|consen  155 AKELNA--EFI----ETSAKAGENVKQLFRRIAAALPGM  187 (221)
T ss_pred             HHHhCc--EEE----EecccCCCCHHHHHHHHHHhccCc
Confidence            233333  222    345667799999999998877654

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.64  E-value=2.3e-14  Score=113.37  Aligned_cols=162  Identities=16%  Similarity=0.190  Sum_probs=94.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      .+|+++|..|+|||||++++++.... ..  ..+++.+.....+.+ ++  ..+.||||+|..++.        .+   .
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~-~~--y~pTi~d~~~k~~~i-~~~~~~l~I~Dt~G~~~~~--------~~---~   65 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFE-EQ--YTPTIEDFHRKLYSI-RGEVYQLDILDTSGNHPFP--------AM---R   65 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCC-CC--CCCChhHhEEEEEEE-CCEEEEEEEEECCCChhhh--------HH---H
Confidence            37999999999999999999876532 11  112222222333444 34  478899999975431        11   1


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHh-------cccccccEEEEEecCCCCCCCcccHHHHhhhcCCchH
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLF-------GKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPL  169 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~-------~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~  169 (225)
                      ..+...+|++|+|+|++++-+-+. ..+++.+.+..       ......|+++|.||+|+....+...++         +
T Consensus        66 ~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~e---------i  136 (247)
T cd04143          66 RLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDE---------V  136 (247)
T ss_pred             HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHH---------H
Confidence            224457899999999985432222 22334443321       011347999999999986432112221         2


Q ss_pred             HHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          170 KEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      .+.+.... .+.    ....|+.++.+++++++.|.++..-
T Consensus       137 ~~~~~~~~-~~~----~~evSAktg~gI~elf~~L~~~~~~  172 (247)
T cd04143         137 EQLVGGDE-NCA----YFEVSAKKNSNLDEMFRALFSLAKL  172 (247)
T ss_pred             HHHHHhcC-CCE----EEEEeCCCCCCHHHHHHHHHHHhcc
Confidence            33332111 111    1245666779999999999887643

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.63  E-value=3.3e-15  Score=132.90  Aligned_cols=143  Identities=13%  Similarity=0.179  Sum_probs=94.5

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhCCcccccc-------------------------------CCCCCceeEEEEEEE
Q 036158           15 PSNGERNLVLVGRTGNGKSATANSILGKRAFKSK-------------------------------AGSSGVTKTCEMQRT   63 (225)
Q Consensus        15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~-------------------------------~~~~~~t~~~~~~~~   63 (225)
                      +.++.++|+++|++++|||||+|+|+........                               ....+.|.+.....+
T Consensus        20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~   99 (632)
T PRK05506         20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF   99 (632)
T ss_pred             cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence            4567789999999999999999999865432110                               011345666666677


Q ss_pred             EeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEE
Q 036158           64 MLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVV  143 (225)
Q Consensus        64 ~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv  143 (225)
                      ++ ++..+.|+||||+.++       ...+.    .....+|++++|+|+.......+.+.+..+... +.   ++++++
T Consensus       100 ~~-~~~~~~liDtPG~~~f-------~~~~~----~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~---~~iivv  163 (632)
T PRK05506        100 AT-PKRKFIVADTPGHEQY-------TRNMV----TGASTADLAIILVDARKGVLTQTRRHSFIASLL-GI---RHVVLA  163 (632)
T ss_pred             cc-CCceEEEEECCChHHH-------HHHHH----HHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CC---CeEEEE
Confidence            77 7889999999996422       12222    234577999999999867666555555555443 22   678899


Q ss_pred             EecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158          144 FTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN  178 (225)
Q Consensus       144 ~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (225)
                      +||+|........+++...+     +.+++...+.
T Consensus       164 vNK~D~~~~~~~~~~~i~~~-----i~~~~~~~~~  193 (632)
T PRK05506        164 VNKMDLVDYDQEVFDEIVAD-----YRAFAAKLGL  193 (632)
T ss_pred             EEecccccchhHHHHHHHHH-----HHHHHHHcCC
Confidence            99999865332234444344     5555555553

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.63  E-value=4.3e-15  Score=125.59  Aligned_cols=138  Identities=15%  Similarity=0.170  Sum_probs=91.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccc-------------------------------cCCCCCceeEEEEEEEEeeCC
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKS-------------------------------KAGSSGVTKTCEMQRTMLKDG   68 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~   68 (225)
                      ++|+++|+.++|||||+++|+.......                               .....+.|.+.....+++ ++
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~-~~   79 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST-DK   79 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc-CC
Confidence            4799999999999999999974432110                               111345677887777888 77


Q ss_pred             ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 036158           69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGD  148 (225)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D  148 (225)
                      ..+.|+||||+.++       ...+.    .....+|++++|+|+..+....+.+.+..+... +.   +++++++||+|
T Consensus        80 ~~~~liDtPGh~~f-------~~~~~----~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~-~~---~~iivviNK~D  144 (406)
T TIGR02034        80 RKFIVADTPGHEQY-------TRNMA----TGASTADLAVLLVDARKGVLEQTRRHSYIASLL-GI---RHVVLAVNKMD  144 (406)
T ss_pred             eEEEEEeCCCHHHH-------HHHHH----HHHhhCCEEEEEEECCCCCccccHHHHHHHHHc-CC---CcEEEEEEecc
Confidence            89999999997532       12222    234577999999999877766666666555542 22   57899999999


Q ss_pred             CCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158          149 ELEDNDETLEDYLGRECPKPLKEILQLCDN  178 (225)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (225)
                      ........+++...+     +..+++..+.
T Consensus       145 ~~~~~~~~~~~i~~~-----~~~~~~~~~~  169 (406)
T TIGR02034       145 LVDYDEEVFENIKKD-----YLAFAEQLGF  169 (406)
T ss_pred             cccchHHHHHHHHHH-----HHHHHHHcCC
Confidence            875432223333333     5555555443

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.63  E-value=3.6e-15  Score=111.87  Aligned_cols=161  Identities=17%  Similarity=0.085  Sum_probs=92.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      ++++++|.+|+|||||++++.+... ...  ..+++.........+ ++  ..+.+|||||.....           ...
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~-~~~--~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~~   65 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGY-PTE--YVPTAFDNFSVVVLV-DGKPVRLQLCDTAGQDEFD-----------KLR   65 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCC-CCC--CCCceeeeeeEEEEE-CCEEEEEEEEECCCChhhc-----------ccc
Confidence            4799999999999999999987553 221  222222222223344 33  468899999975331           222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhc----CCchHHH
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRE----CPKPLKE  171 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~----~~~~~~~  171 (225)
                      ..+...+|++|+|+|..++.+-..  ..++..+....   ...|+++|.||+|+.... .....+....    ..+....
T Consensus        66 ~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~  141 (173)
T cd04130          66 PLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN---PKAPIILVGTQADLRTDV-NVLIQLARYGEKPVSQSRAKA  141 (173)
T ss_pred             ccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhhccCh-hHHHHHhhcCCCCcCHHHHHH
Confidence            345678899999999975433322  22344444322   237999999999975432 1111111110    0011233


Q ss_pred             HHHHcCC-cEEEeeCCCccccccHHHHHHHHHHHH
Q 036158          172 ILQLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVN  205 (225)
Q Consensus       172 ~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~  205 (225)
                      +.+..+. .+      ...|+.++.+++++++.+.
T Consensus       142 ~a~~~~~~~~------~e~Sa~~~~~v~~lf~~~~  170 (173)
T cd04130         142 LAEKIGACEY------IECSALTQKNLKEVFDTAI  170 (173)
T ss_pred             HHHHhCCCeE------EEEeCCCCCCHHHHHHHHH
Confidence            3333332 22      2455667799999998763

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=6.2e-15  Score=122.43  Aligned_cols=132  Identities=17%  Similarity=0.190  Sum_probs=95.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ...+.|+++|++|+|||||+|+|...+...++ +.+++|++.-...+++ +|.++.|+||.|+-+.  .++.+...=.+.
T Consensus       266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVS-pv~GTTRDaiea~v~~-~G~~v~L~DTAGiRe~--~~~~iE~~gI~r  341 (531)
T KOG1191|consen  266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVS-PVPGTTRDAIEAQVTV-NGVPVRLSDTAGIREE--SNDGIEALGIER  341 (531)
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeC-CCCCcchhhheeEeec-CCeEEEEEeccccccc--cCChhHHHhHHH
Confidence            34589999999999999999999999987775 4778899888888887 9999999999999872  222222222223


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc-------cccccEEEEEecCCCCCC
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK-------KISDYMIVVFTGGDELED  152 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~vv~~k~D~~~~  152 (225)
                      .......+|++++|+|+....+.++..+.+.+...-..       ..+.+++++.||.|...+
T Consensus       342 A~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~  404 (531)
T KOG1191|consen  342 ARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK  404 (531)
T ss_pred             HHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence            33455678999999999655555555555555443111       123688899999997765

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.62  E-value=6.4e-15  Score=124.59  Aligned_cols=168  Identities=15%  Similarity=0.173  Sum_probs=99.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcccc-ccCCCCCceeEEEEEEEE--------------e-----------eCCce
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFK-SKAGSSGVTKTCEMQRTM--------------L-----------KDGQV   70 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~--------------~-----------~~~~~   70 (225)
                      .+.++|+++|+.++|||||+++|.+..... ......+.|.......+.              .           +.+..
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            457899999999999999999998653210 111122333333221111              0           01467


Q ss_pred             EEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccccEEEEEecCCC
Q 036158           71 VNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRF-SEEEGAAIHILESLFGKKISDYMIVVFTGGDE  149 (225)
Q Consensus        71 ~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~  149 (225)
                      +.+|||||+.++       ...+    ......+|++++|+|+++.. .....+.+..+.. ++.   +++++++||+|+
T Consensus        82 i~liDtPGh~~f-------~~~~----~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~gi---~~iIVvvNK~Dl  146 (406)
T TIGR03680        82 VSFVDAPGHETL-------MATM----LSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-IGI---KNIVIVQNKIDL  146 (406)
T ss_pred             EEEEECCCHHHH-------HHHH----HHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-cCC---CeEEEEEEcccc
Confidence            999999997432       2222    22334679999999998655 4445555554432 222   578999999998


Q ss_pred             CCCCcccHHHHhhhcCCchHHHHHHHcC-CcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          150 LEDNDETLEDYLGRECPKPLKEILQLCD-NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      ....  ...+...+     +.+++.... ..+.    ..+.|+.++.++++|++.|...+..
T Consensus       147 ~~~~--~~~~~~~~-----i~~~l~~~~~~~~~----ii~vSA~~g~gi~~L~e~L~~~l~~  197 (406)
T TIGR03680       147 VSKE--KALENYEE-----IKEFVKGTVAENAP----IIPVSALHNANIDALLEAIEKFIPT  197 (406)
T ss_pred             CCHH--HHHHHHHH-----HHhhhhhcccCCCe----EEEEECCCCCChHHHHHHHHHhCCC
Confidence            6532  22222222     333333221 1111    2345666778999999999886653

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.62  E-value=4e-15  Score=115.88  Aligned_cols=136  Identities=19%  Similarity=0.252  Sum_probs=87.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccc-----------------------------cccCCCCCceeEEEEEEEEeeCCceE
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAF-----------------------------KSKAGSSGVTKTCEMQRTMLKDGQVV   71 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~~~~~~~~~   71 (225)
                      +|+++|+.++|||||+.+|+.....                             .......++|.......+.+ .+..+
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i   79 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRF   79 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEE
Confidence            5899999999999999998633210                             01112356788888888888 88999


Q ss_pred             EEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccccEEEEE
Q 036158           72 NVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNR-------FSEEEGAAIHILESLFGKKISDYMIVVF  144 (225)
Q Consensus        72 ~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~vv~  144 (225)
                      .++||||+.++           ...+......+|++++|+|+.+.       ......+.+..... .+   .+|+++++
T Consensus        80 ~liDtpG~~~~-----------~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~iiivv  144 (219)
T cd01883          80 TILDAPGHRDF-----------VPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLART-LG---VKQLIVAV  144 (219)
T ss_pred             EEEECCChHHH-----------HHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHH-cC---CCeEEEEE
Confidence            99999996432           12222334567999999999752       22223333333322 22   26889999


Q ss_pred             ecCCCCCC--CcccHHHHhhhcCCchHHHHHHHcC
Q 036158          145 TGGDELED--NDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus       145 ~k~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      ||+|....  ....+++...+     ++..+...+
T Consensus       145 NK~Dl~~~~~~~~~~~~i~~~-----l~~~l~~~~  174 (219)
T cd01883         145 NKMDDVTVNWSEERYDEIKKE-----LSPFLKKVG  174 (219)
T ss_pred             EccccccccccHHHHHHHHHH-----HHHHHHHcC
Confidence            99998743  12234555444     555666554

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.62  E-value=9.7e-15  Score=122.87  Aligned_cols=164  Identities=16%  Similarity=0.152  Sum_probs=118.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK--DGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ..+.|.++|+...|||||+-.|-+.++...  ...+.|.+...+.+.++  ....++|+||||+..+           ..
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~--EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAF-----------t~   70 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAF-----------TA   70 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhcCccccc--cCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHH-----------HH
Confidence            347899999999999999999999887433  35678999999999885  3479999999997633           22


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      +-..-..-+|.++||+++++.+-+.+.+.+..++..     ..|++|++||+|+.+..+.....-+++     ..=.-+.
T Consensus        71 mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a-----~vP~iVAiNKiDk~~~np~~v~~el~~-----~gl~~E~  140 (509)
T COG0532          71 MRARGASVTDIAILVVAADDGVMPQTIEAINHAKAA-----GVPIVVAINKIDKPEANPDKVKQELQE-----YGLVPEE  140 (509)
T ss_pred             HHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHC-----CCCEEEEEecccCCCCCHHHHHHHHHH-----cCCCHhh
Confidence            222334566999999999989988888877777764     489999999999986643332222222     0111233


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                      |+...    ...+.||+++.++++|++.+.-..
T Consensus       141 ~gg~v----~~VpvSA~tg~Gi~eLL~~ill~a  169 (509)
T COG0532         141 WGGDV----IFVPVSAKTGEGIDELLELILLLA  169 (509)
T ss_pred             cCCce----EEEEeeccCCCCHHHHHHHHHHHH
Confidence            34332    234567888999999999886443

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.62  E-value=2.5e-14  Score=125.75  Aligned_cols=154  Identities=18%  Similarity=0.251  Sum_probs=98.9

Q ss_pred             cCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCcc
Q 036158           26 GRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIH  105 (225)
Q Consensus        26 G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (225)
                      |.+|+|||||+|++++... .. ...+++|.+.....+.+ ++..+.++||||.++......  .+.+.+.. .....+|
T Consensus         1 G~pNvGKSSL~N~Ltg~~~-~v-~n~pG~Tv~~~~~~i~~-~~~~i~lvDtPG~~~~~~~s~--~e~v~~~~-l~~~~aD   74 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQ-TV-GNWPGVTVEKKEGKLGF-QGEDIEIVDLPGIYSLTTFSL--EEEVARDY-LLNEKPD   74 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCC-ee-cCCCCeEEEEEEEEEEE-CCeEEEEEECCCccccCccch--HHHHHHHH-HhhcCCC
Confidence            8999999999999998874 22 34667788777777777 778899999999987543221  11222211 1234789


Q ss_pred             EEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeC
Q 036158          106 AVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDN  185 (225)
Q Consensus       106 ~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (225)
                      ++++|+|++ .+.. .   +....+...  ...|+++|+||+|..+..  ....        ..+++.+..+.++.    
T Consensus        75 vvI~VvDat-~ler-~---l~l~~ql~~--~~~PiIIVlNK~Dl~~~~--~i~~--------d~~~L~~~lg~pvv----  133 (591)
T TIGR00437        75 LVVNVVDAS-NLER-N---LYLTLQLLE--LGIPMILALNLVDEAEKK--GIRI--------DEEKLEERLGVPVV----  133 (591)
T ss_pred             EEEEEecCC-cchh-h---HHHHHHHHh--cCCCEEEEEehhHHHHhC--CChh--------hHHHHHHHcCCCEE----
Confidence            999999997 3322 2   222222221  248999999999975432  1111        12334444454433    


Q ss_pred             CCccccccHHHHHHHHHHHHHHH
Q 036158          186 KTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       186 ~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                        +.|+.++.+++++++.+.+..
T Consensus       134 --~tSA~tg~Gi~eL~~~i~~~~  154 (591)
T TIGR00437       134 --PTSATEGRGIERLKDAIRKAI  154 (591)
T ss_pred             --EEECCCCCCHHHHHHHHHHHh
Confidence              445566789999999997653

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.62  E-value=8.8e-15  Score=128.59  Aligned_cols=164  Identities=21%  Similarity=0.236  Sum_probs=103.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcccccc-------------CCCCCceeEEEEEEEEee--CC--ceEEEEeCCCCCC
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSK-------------AGSSGVTKTCEMQRTMLK--DG--QVVNVIDTPGLFD   81 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~-------------~~~~~~t~~~~~~~~~~~--~~--~~~~liDtPG~~~   81 (225)
                      ..+|+++|+.++|||||+++|+........             ....+.|.......+.|.  ++  ..++||||||+.+
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            468999999999999999999865321110             012355655555555542  22  5789999999875


Q ss_pred             CCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHh
Q 036158           82 SSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL  161 (225)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~  161 (225)
                      +.       ..    +..+...+|++|+|+|+.++.+..+...+....+   .  ..|+++|+||+|....   ..++..
T Consensus        83 F~-------~~----v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~--~ipiIiViNKiDl~~~---~~~~~~  143 (595)
T TIGR01393        83 FS-------YE----VSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---N--DLEIIPVINKIDLPSA---DPERVK  143 (595)
T ss_pred             HH-------HH----HHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---c--CCCEEEEEECcCCCcc---CHHHHH
Confidence            41       12    2234456799999999986666665544433322   1  3689999999997533   222222


Q ss_pred             hhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          162 GRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                      .+     +.+.   .+...   ......||.++.++++|++.|.+.++...
T Consensus       144 ~e-----l~~~---lg~~~---~~vi~vSAktG~GI~~Lle~I~~~lp~p~  183 (595)
T TIGR01393       144 KE-----IEEV---IGLDA---SEAILASAKTGIGIEEILEAIVKRVPPPK  183 (595)
T ss_pred             HH-----HHHH---hCCCc---ceEEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence            22     2222   23211   11245677888999999999988876653

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.62  E-value=1.8e-14  Score=115.60  Aligned_cols=115  Identities=22%  Similarity=0.261  Sum_probs=77.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCcccccc--CC--------------CCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSK--AG--------------SSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA   84 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~--~~--------------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (225)
                      +|+++|++|+|||||+|+|++.......  ..              ..+.|.......+.+ ++..+++|||||..++  
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~~f--   77 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-KGHKINLIDTPGYADF--   77 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-CCEEEEEEECcCHHHH--
Confidence            5899999999999999999854321110  00              113344445556677 7889999999997532  


Q ss_pred             CcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158           85 DSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED  152 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~  152 (225)
                           ...+.    .+...+|++++|+++...........++.+...     ..|.++++||+|....
T Consensus        78 -----~~~~~----~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~-----~~p~iivvNK~D~~~~  131 (268)
T cd04170          78 -----VGETR----AALRAADAALVVVSAQSGVEVGTEKLWEFADEA-----GIPRIIFINKMDRERA  131 (268)
T ss_pred             -----HHHHH----HHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECCccCCC
Confidence                 12222    233466999999999866666555666555432     3789999999997654

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.62  E-value=2.1e-14  Score=110.11  Aligned_cols=152  Identities=13%  Similarity=0.011  Sum_probs=91.8

Q ss_pred             EcCCCCCHHHHHHHHhCCccccccCCCCCceeEE--EEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcC
Q 036158           25 VGRTGNGKSATANSILGKRAFKSKAGSSGVTKTC--EMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTK  101 (225)
Q Consensus        25 ~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~  101 (225)
                      +|..|+|||||+++++.... ..   ....|...  ....+.+. ....+.||||||...+           ......++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f-~~---~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~-----------~~l~~~~~   65 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEF-EK---KYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKF-----------GGLRDGYY   65 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCC-CC---CCCCceeEEEEEEEEEECCEEEEEEEEECCCchhh-----------hhhhHHHh
Confidence            59999999999999986543 11   11223322  22333331 2348999999996532           23334467


Q ss_pred             CCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcE
Q 036158          102 DGIHAVLVVFSVRNRFSEEEG-AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC  180 (225)
Q Consensus       102 ~~~~~ii~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (225)
                      .++|++|+|+|+.++.+.... .++..+.+..   ...|+++|.||+|+....  ...+         ...+....+..+
T Consensus        66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~~~~--v~~~---------~~~~~~~~~~~~  131 (200)
T smart00176       66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDVKDRK--VKAK---------SITFHRKKNLQY  131 (200)
T ss_pred             cCCCEEEEEEECCChHHHHHHHHHHHHHHHhC---CCCCEEEEEECccccccc--CCHH---------HHHHHHHcCCEE
Confidence            788999999999855333322 2334444432   247999999999974321  1111         112222223222


Q ss_pred             EEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          181 VLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       181 ~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                        +    .+||..+.+++++++.|.+.+.+.
T Consensus       132 --~----e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176      132 --Y----DISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             --E----EEeCCCCCCHHHHHHHHHHHHHhc
Confidence              2    356667799999999999777554

Ran is involved in the active transport of proteins through nuclear pores.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.61  E-value=1.5e-14  Score=112.42  Aligned_cols=115  Identities=19%  Similarity=0.271  Sum_probs=76.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCcccccc--------------CCCCCceeEEEEEEEEee---------CCceEEEEeC
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSK--------------AGSSGVTKTCEMQRTMLK---------DGQVVNVIDT   76 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~~---------~~~~~~liDt   76 (225)
                      .+|+++|+.++|||||+.+|+........              ....+.|.......+.+.         .+..+.+|||
T Consensus         1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT   80 (222)
T cd01885           1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS   80 (222)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence            37999999999999999999854421110              011233433333333342         1567999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 036158           77 PGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDEL  150 (225)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~  150 (225)
                      ||+.++.       .    ....+...+|++++|+|+..+.+..+...++.....     ..|+++++||+|..
T Consensus        81 PG~~~f~-------~----~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~-----~~p~ilviNKiD~~  138 (222)
T cd01885          81 PGHVDFS-------S----EVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKE-----RVKPVLVINKIDRL  138 (222)
T ss_pred             CCccccH-------H----HHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECCCcc
Confidence            9998652       1    222344567999999999877777666666555432     26899999999976

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.61  E-value=1.5e-14  Score=122.35  Aligned_cols=170  Identities=14%  Similarity=0.181  Sum_probs=101.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCcc-ccccCCCCCceeEEEEEEEEee-------------------------CCc
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRA-FKSKAGSSGVTKTCEMQRTMLK-------------------------DGQ   69 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~-------------------------~~~   69 (225)
                      .++.++|+++|+.++|||||+.+|.+... ........+.|.........+.                         ...
T Consensus         6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (411)
T PRK04000          6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR   85 (411)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence            45679999999999999999999976421 1111123345554433221110                         025


Q ss_pred             eEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 036158           70 VVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRF-SEEEGAAIHILESLFGKKISDYMIVVFTGGD  148 (225)
Q Consensus        70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D  148 (225)
                      .+.||||||+.+           +...+......+|++++|+|+.++. ...+.+.+..+.. .+   .+++++|+||+|
T Consensus        86 ~i~liDtPG~~~-----------f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~---i~~iiVVlNK~D  150 (411)
T PRK04000         86 RVSFVDAPGHET-----------LMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-IG---IKNIVIVQNKID  150 (411)
T ss_pred             EEEEEECCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cC---CCcEEEEEEeec
Confidence            799999999642           2222223334679999999998655 4555555555533 22   257899999999


Q ss_pred             CCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          149 ELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      +....  .......+     +++++......   .....+.|+.++.++++|++.|.+.+.+
T Consensus       151 l~~~~--~~~~~~~~-----i~~~l~~~~~~---~~~ii~vSA~~g~gI~~L~~~L~~~l~~  202 (411)
T PRK04000        151 LVSKE--RALENYEQ-----IKEFVKGTVAE---NAPIIPVSALHKVNIDALIEAIEEEIPT  202 (411)
T ss_pred             cccch--hHHHHHHH-----HHHHhccccCC---CCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence            86542  22222222     33333221100   0112345667779999999999887654

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=8.3e-14  Score=104.21  Aligned_cols=165  Identities=18%  Similarity=0.136  Sum_probs=113.7

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHH
Q 036158           15 PSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKE   92 (225)
Q Consensus        15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~   92 (225)
                      +....++|+++|.+|+|||.++-.+........  .......+.....+++ ++.  .+.+|||.|..           .
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~--~~sTiGIDFk~kti~l-~g~~i~lQiWDtaGQe-----------r   73 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTS--FISTIGIDFKIKTIEL-DGKKIKLQIWDTAGQE-----------R   73 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCC--ccceEEEEEEEEEEEe-CCeEEEEEEEEcccch-----------h
Confidence            556779999999999999999988886654222  1223344555556666 444  78999999954           4


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158           93 IVKCIGMTKDGIHAVLVVFSVRNRFSEE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE  171 (225)
Q Consensus        93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~  171 (225)
                      +......++.+++++++|+|+...-+-+ -..+++.+.+.-..  ..+.++|.||+|........         .+.-+.
T Consensus        74 f~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~--~v~~~LvGNK~D~~~~R~V~---------~e~ge~  142 (207)
T KOG0078|consen   74 FRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASD--DVVKILVGNKCDLEEKRQVS---------KERGEA  142 (207)
T ss_pred             HHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCC--CCcEEEeecccccccccccc---------HHHHHH
Confidence            5556667888999999999997443322 34477778776444  48999999999976533111         122456


Q ss_pred             HHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          172 ILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      +....|..++      .+||+.+.+|.+.+..+.+-+.+
T Consensus       143 lA~e~G~~F~------EtSAk~~~NI~eaF~~La~~i~~  175 (207)
T KOG0078|consen  143 LAREYGIKFF------ETSAKTNFNIEEAFLSLARDILQ  175 (207)
T ss_pred             HHHHhCCeEE------EccccCCCCHHHHHHHHHHHHHh
Confidence            6667666544      34566678999988888776664

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.61  E-value=6.3e-15  Score=116.80  Aligned_cols=96  Identities=17%  Similarity=0.257  Sum_probs=73.5

Q ss_pred             CCCCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHH
Q 036158           12 PTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSK   91 (225)
Q Consensus        12 ~~~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~   91 (225)
                      +.-.....-+++++|.+++|||||+|.|++...  ....++.+|..+-....++ .+-.+.++|+||+.+.........+
T Consensus        56 f~V~KsGda~v~lVGfPsvGKStLL~~LTnt~s--eva~y~FTTl~~VPG~l~Y-~ga~IQild~Pgii~gas~g~grG~  132 (365)
T COG1163          56 FAVKKSGDATVALVGFPSVGKSTLLNKLTNTKS--EVADYPFTTLEPVPGMLEY-KGAQIQLLDLPGIIEGASSGRGRGR  132 (365)
T ss_pred             ceEeccCCeEEEEEcCCCccHHHHHHHHhCCCc--cccccCceecccccceEee-cCceEEEEcCcccccCcccCCCCcc
Confidence            344444558999999999999999999999885  3345777888888878887 8999999999999887655443333


Q ss_pred             HHHHHHhhcCCCccEEEEEEeCC
Q 036158           92 EIVKCIGMTKDGIHAVLVVFSVR  114 (225)
Q Consensus        92 ~~~~~~~~~~~~~~~ii~v~~~~  114 (225)
                      ++.    ...+.+|++++|+|+.
T Consensus       133 ~vl----sv~R~ADlIiiVld~~  151 (365)
T COG1163         133 QVL----SVARNADLIIIVLDVF  151 (365)
T ss_pred             eee----eeeccCCEEEEEEecC
Confidence            332    3456779999999886

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.61  E-value=7.6e-15  Score=125.15  Aligned_cols=142  Identities=18%  Similarity=0.205  Sum_probs=96.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccc-----------------------------cccCCCCCceeEEEEEEEEee
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAF-----------------------------KSKAGSSGVTKTCEMQRTMLK   66 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~~~~   66 (225)
                      .++.++|+++|+.++|||||+.+|+.....                             .......+.|.+.....+++ 
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~-   82 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-   82 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc-
Confidence            467799999999999999999988742110                             01112356787777777887 


Q ss_pred             CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-------CHHHHHHHHHHHHHhccccccc
Q 036158           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRF-------SEEEGAAIHILESLFGKKISDY  139 (225)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~  139 (225)
                      ++..++|+||||+.++           ...+......+|++++|+|+..+.       ....++.+..+... +-   ++
T Consensus        83 ~~~~i~lIDtPGh~~f-----------~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~-gi---~~  147 (446)
T PTZ00141         83 PKYYFTIIDAPGHRDF-----------IKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL-GV---KQ  147 (446)
T ss_pred             CCeEEEEEECCChHHH-----------HHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc-CC---Ce
Confidence            7889999999997643           222223345779999999997654       24555666655542 21   45


Q ss_pred             EEEEEecCCCCC--CCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158          140 MIVVFTGGDELE--DNDETLEDYLGRECPKPLKEILQLCDN  178 (225)
Q Consensus       140 ~~vv~~k~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (225)
                      +++++||+|...  ..+..+++...+     +++.+...+.
T Consensus       148 iiv~vNKmD~~~~~~~~~~~~~i~~~-----i~~~l~~~g~  183 (446)
T PTZ00141        148 MIVCINKMDDKTVNYSQERYDEIKKE-----VSAYLKKVGY  183 (446)
T ss_pred             EEEEEEccccccchhhHHHHHHHHHH-----HHHHHHhcCC
Confidence            789999999432  223356666666     7777776654

>smart00053 DYNc Dynamin, GTPase

Probab=99.61  E-value=5e-14  Score=110.15  Aligned_cols=132  Identities=16%  Similarity=0.196  Sum_probs=83.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCC--------------------------------------------
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSS--------------------------------------------   52 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~--------------------------------------------   52 (225)
                      -..+.|+|+|++|+||||++++|.|...++...+..                                            
T Consensus        24 i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~  103 (240)
T smart00053       24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV  103 (240)
T ss_pred             CCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence            345789999999999999999999975332211100                                            


Q ss_pred             -----CceeEEEEEEEEeeCCceEEEEeCCCCCCCCC--CcHHHHHHHHHHHhhcCC-CccEEEEEEeCCCCCCHHH-HH
Q 036158           53 -----GVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA--DSEFVSKEIVKCIGMTKD-GIHAVLVVFSVRNRFSEEE-GA  123 (225)
Q Consensus        53 -----~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~ii~v~~~~~~~~~~~-~~  123 (225)
                           +.+..+-...+..|....++|+||||+.....  ........+.+.+..+.. ..+++++|+++...+...+ .+
T Consensus       104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~  183 (240)
T smart00053      104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK  183 (240)
T ss_pred             cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence                 00011111122333445899999999974421  123344556666666655 3468999999876666655 35


Q ss_pred             HHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158          124 AIHILESLFGKKISDYMIVVFTGGDELEDN  153 (225)
Q Consensus       124 ~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~  153 (225)
                      +.+.+...     ..++++|+||+|.....
T Consensus       184 ia~~ld~~-----~~rti~ViTK~D~~~~~  208 (240)
T smart00053      184 LAKEVDPQ-----GERTIGVITKLDLMDEG  208 (240)
T ss_pred             HHHHHHHc-----CCcEEEEEECCCCCCcc
Confidence            55555442     37999999999988654

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.60  E-value=2.4e-14  Score=102.23  Aligned_cols=121  Identities=15%  Similarity=0.105  Sum_probs=77.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .-.++|+++|.+|+|||||+-+++....-+..+...+.........+.- ...++.||||+|..           .++..
T Consensus         9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg-~~~KlaiWDTAGqE-----------rFRtL   76 (209)
T KOG0080|consen    9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDG-KRLKLAIWDTAGQE-----------RFRTL   76 (209)
T ss_pred             ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcC-ceEEEEEEeccchH-----------hhhcc
Confidence            4458999999999999999999986654322222233333333333322 33489999999954           45556


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccccEEEEEecCCCC
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEG-AAIHILESLFGKKISDYMIVVFTGGDEL  150 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~vv~~k~D~~  150 (225)
                      ..++++++.++|+|.|++.+-+-... .++..+..+... ...-.++|.||+|+-
T Consensus        77 TpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn-~diikmlVgNKiDke  130 (209)
T KOG0080|consen   77 TPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTN-PDIIKMLVGNKIDKE  130 (209)
T ss_pred             CHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCC-ccHhHhhhcccccch
Confidence            66789999999999999855332222 233333333222 223457899999953

>PLN03126 Elongation factor Tu; Provisional

Probab=99.60  E-value=8e-14  Score=119.46  Aligned_cols=140  Identities=18%  Similarity=0.240  Sum_probs=96.1

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhCCccc--------------cccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCC
Q 036158           15 PSNGERNLVLVGRTGNGKSATANSILGKRAF--------------KSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF   80 (225)
Q Consensus        15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~   80 (225)
                      ..++.++|+++|+.++|||||+++|++....              .......+.|.++....+.+ ++..+.|+||||+.
T Consensus        77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liDtPGh~  155 (478)
T PLN03126         77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHA  155 (478)
T ss_pred             ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec-CCcEEEEEECCCHH
Confidence            3577899999999999999999999953211              01122356677776666777 78899999999975


Q ss_pred             CCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccccc-EEEEEecCCCCCCCcccHHH
Q 036158           81 DSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDY-MIVVFTGGDELEDNDETLED  159 (225)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~vv~~k~D~~~~~~~~~~~  159 (225)
                      ++       ...+.    .....+|++++|+|+.+.....+++.+..+... +    .| +++++||+|..... ...+.
T Consensus       156 ~f-------~~~~~----~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~-g----i~~iIvvvNK~Dl~~~~-~~~~~  218 (478)
T PLN03126        156 DY-------VKNMI----TGAAQMDGAILVVSGADGPMPQTKEHILLAKQV-G----VPNMVVFLNKQDQVDDE-ELLEL  218 (478)
T ss_pred             HH-------HHHHH----HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-C----CCeEEEEEecccccCHH-HHHHH
Confidence            32       22222    233467999999999877777777777766553 2    44 78899999986432 12333


Q ss_pred             HhhhcCCchHHHHHHHcC
Q 036158          160 YLGRECPKPLKEILQLCD  177 (225)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~  177 (225)
                      ...+     ++++++.++
T Consensus       219 i~~~-----i~~~l~~~g  231 (478)
T PLN03126        219 VELE-----VRELLSSYE  231 (478)
T ss_pred             HHHH-----HHHHHHhcC
Confidence            3333     777777764

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.60  E-value=1.1e-13  Score=107.60  Aligned_cols=165  Identities=14%  Similarity=0.068  Sum_probs=92.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      .+|+|+|..|+|||||++++.+.... ...  .++........+.+ ++  ..+.||||+|...+           ....
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~-~~y--~pTi~~~~~~~~~~-~~~~v~L~iwDt~G~e~~-----------~~l~   66 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYP-GSY--VPTVFENYTASFEI-DKRRIELNMWDTSGSSYY-----------DNVR   66 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCC-Ccc--CCccccceEEEEEE-CCEEEEEEEEeCCCcHHH-----------HHHh
Confidence            68999999999999999999976532 211  11111111123333 33  36889999996432           2223


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhh----cCCchHHH
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR----ECPKPLKE  171 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~----~~~~~~~~  171 (225)
                      ..++..+|++|+|+|+.++.+-...  .+...+....   ...|+++|.||+|+..+. .......+.    ...+...+
T Consensus        67 ~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~---~~~piiLVgnK~DL~~~~-~~~~~~~~~~~~pIs~e~g~~  142 (222)
T cd04173          67 PLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC---PNAKVVLVGCKLDMRTDL-ATLRELSKQRLIPVTHEQGTV  142 (222)
T ss_pred             HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEECcccccch-hhhhhhhhccCCccCHHHHHH
Confidence            3467899999999999854322221  1222232222   247999999999976532 111111110    00112334


Q ss_pred             HHHHcCC-cEEEeeCCCccccccHHH-HHHHHHHHHHHHH
Q 036158          172 ILQLCDN-RCVLFDNKTKDTAKRTEQ-VGKLLSLVNSVIV  209 (225)
Q Consensus       172 ~~~~~~~-~~~~~~~~~~~~~~~~~~-v~~l~~~i~~~~~  209 (225)
                      +.+..+. .|+      .+||.++.+ +++++.......-
T Consensus       143 ~ak~~~~~~y~------E~SAk~~~~~V~~~F~~~~~~~~  176 (222)
T cd04173         143 LAKQVGAVSYV------ECSSRSSERSVRDVFHVATVASL  176 (222)
T ss_pred             HHHHcCCCEEE------EcCCCcCCcCHHHHHHHHHHHHH
Confidence            4444442 222      334454454 9999887776543

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.60  E-value=3.3e-14  Score=124.70  Aligned_cols=115  Identities=18%  Similarity=0.226  Sum_probs=74.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-----------------CCceEEEEeCCCCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-----------------DGQVVNVIDTPGLF   80 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~liDtPG~~   80 (225)
                      ..+.|+++|++|+|||||+|+|.+.......  ..+.|.+.......++                 .-..++||||||+.
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~--~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e   82 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKE--AGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE   82 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccCC--CCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence            3478999999999999999999887643222  2222222211111110                 00137899999986


Q ss_pred             CCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 036158           81 DSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDEL  150 (225)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~  150 (225)
                      ++.           .........+|++++|+|+++.....+.+.+..+..     ...|+++++||+|..
T Consensus        83 ~f~-----------~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~-----~~vpiIvviNK~D~~  136 (586)
T PRK04004         83 AFT-----------NLRKRGGALADIAILVVDINEGFQPQTIEAINILKR-----RKTPFVVAANKIDRI  136 (586)
T ss_pred             HHH-----------HHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHH-----cCCCEEEEEECcCCc
Confidence            441           112233456799999999987666666666665543     237899999999975

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.60  E-value=3.5e-14  Score=124.94  Aligned_cols=166  Identities=19%  Similarity=0.205  Sum_probs=104.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccc-------------cCCCCCceeEEEEEEEEee----CCceEEEEeCCCC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKS-------------KAGSSGVTKTCEMQRTMLK----DGQVVNVIDTPGL   79 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~-------------~~~~~~~t~~~~~~~~~~~----~~~~~~liDtPG~   79 (225)
                      ....+|+++|+.++|||||+++|+.......             .....+.|.......+.|.    .+..++||||||+
T Consensus         5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh   84 (600)
T PRK05433          5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH   84 (600)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence            3457999999999999999999986432110             0112345555544455542    1457999999998


Q ss_pred             CCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHH
Q 036158           80 FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLED  159 (225)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~  159 (225)
                      .++.       ..+.    .+...+|++|+|+|+.++....+...+..+.+   .  ..|+++|+||+|....   ..+.
T Consensus        85 ~dF~-------~~v~----~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~---~--~lpiIvViNKiDl~~a---~~~~  145 (600)
T PRK05433         85 VDFS-------YEVS----RSLAACEGALLVVDASQGVEAQTLANVYLALE---N--DLEIIPVLNKIDLPAA---DPER  145 (600)
T ss_pred             HHHH-------HHHH----HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---C--CCCEEEEEECCCCCcc---cHHH
Confidence            7642       2222    23446699999999986766665555444332   1  3689999999997543   2222


Q ss_pred             HhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          160 YLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                      ...+     +.+.   .+...   ......|+.++.++++|++.|.+.++...
T Consensus       146 v~~e-----i~~~---lg~~~---~~vi~iSAktG~GI~~Ll~~I~~~lp~P~  187 (600)
T PRK05433        146 VKQE-----IEDV---IGIDA---SDAVLVSAKTGIGIEEVLEAIVERIPPPK  187 (600)
T ss_pred             HHHH-----HHHH---hCCCc---ceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence            2222     2222   22210   01235577788999999999988887653

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.59  E-value=3.1e-14  Score=119.57  Aligned_cols=162  Identities=14%  Similarity=0.127  Sum_probs=117.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ...+.|-++|+...|||||+.+|-+..+...  ...+.|.+...+.+.++.|..++|+||||+-           .+..+
T Consensus       151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~--E~GGITQhIGAF~V~~p~G~~iTFLDTPGHa-----------AF~aM  217 (683)
T KOG1145|consen  151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAG--EAGGITQHIGAFTVTLPSGKSITFLDTPGHA-----------AFSAM  217 (683)
T ss_pred             CCCCeEEEeecccCChhhHHHHHhhCceehh--hcCCccceeceEEEecCCCCEEEEecCCcHH-----------HHHHH
Confidence            3468899999999999999999998887444  3567899999999999999999999999975           23344


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      -..-....|++++|+.+++++-+.+.+.+...+.     ...|++|++||+|+.+.   ..+....+...  .--..+.+
T Consensus       218 RaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~-----A~VpiVvAinKiDkp~a---~pekv~~eL~~--~gi~~E~~  287 (683)
T KOG1145|consen  218 RARGANVTDIVVLVVAADDGVMPQTLEAIKHAKS-----ANVPIVVAINKIDKPGA---NPEKVKRELLS--QGIVVEDL  287 (683)
T ss_pred             HhccCccccEEEEEEEccCCccHhHHHHHHHHHh-----cCCCEEEEEeccCCCCC---CHHHHHHHHHH--cCccHHHc
Confidence            3445567799999999998887766555554444     34899999999997755   44444333000  01124566


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVN  205 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~  205 (225)
                      |...-.    .+.||.++.+++.|.+.+.
T Consensus       288 GGdVQv----ipiSAl~g~nl~~L~eail  312 (683)
T KOG1145|consen  288 GGDVQV----IPISALTGENLDLLEEAIL  312 (683)
T ss_pred             CCceeE----EEeecccCCChHHHHHHHH
Confidence            664433    3446667789998888775

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.59  E-value=4.7e-14  Score=104.34  Aligned_cols=153  Identities=22%  Similarity=0.221  Sum_probs=89.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      ++|+++|.+|+|||||+++++....... ..+   +.......+.+ ++  ..+.+|||+|....               
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~-~~~---~~~~~~~~i~~-~~~~~~l~i~D~~g~~~~---------------   60 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQL-ESP---EGGRFKKEVLV-DGQSHLLLIRDEGGAPDA---------------   60 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCC-CCC---CccceEEEEEE-CCEEEEEEEEECCCCCch---------------
Confidence            4799999999999999998876543211 111   11111233444 44  36889999997521               


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                       .+...+|++++|+|.+++-+-.. ..+++.+..... ....|+++|.||.|+.......+...       ..+++.+..
T Consensus        61 -~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~~~~~~v~~~-------~~~~~~~~~  131 (158)
T cd04103          61 -QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRN-ISEIPLILVGTQDAISESNPRVIDDA-------RARQLCADM  131 (158)
T ss_pred             -hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeeHHHhhhcCCcccCHH-------HHHHHHHHh
Confidence             12346799999999985544443 334444444321 12369999999988642211111111       122233222


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNS  206 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~  206 (225)
                      + .+.++    .+||+++.+++++++.+.+
T Consensus       132 ~-~~~~~----e~SAk~~~~i~~~f~~~~~  156 (158)
T cd04103         132 K-RCSYY----ETCATYGLNVERVFQEAAQ  156 (158)
T ss_pred             C-CCcEE----EEecCCCCCHHHHHHHHHh
Confidence            1 12222    4566778999999988754

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.59  E-value=1.2e-13  Score=107.31  Aligned_cols=163  Identities=15%  Similarity=0.026  Sum_probs=92.4

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEE--EEe-eCCceEEEEeCCCCCCCCCCcHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQR--TML-KDGQVVNVIDTPGLFDSSADSEFVSKE   92 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~--~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~   92 (225)
                      ....++|+++|++|+|||||++.++.......    ...|.......  +.. .....+.+|||||...+          
T Consensus         6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~----------   71 (215)
T PTZ00132          6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKK----YIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKF----------   71 (215)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHhCCCCCC----CCCccceEEEEEEEEECCeEEEEEEEECCCchhh----------
Confidence            45568999999999999999976554332111    11222222222  222 12347899999996432          


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158           93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE  171 (225)
Q Consensus        93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~  171 (225)
                       ......+...++++++|+|..++.+-.. ..++..+....   ...|++++.||+|.....  ...+         ...
T Consensus        72 -~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~i~lv~nK~Dl~~~~--~~~~---------~~~  136 (215)
T PTZ00132         72 -GGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC---ENIPIVLVGNKVDVKDRQ--VKAR---------QIT  136 (215)
T ss_pred             -hhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccCcccc--CCHH---------HHH
Confidence             1111234456799999999975433322 22333333332   236888999999975321  1011         112


Q ss_pred             HHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158          172 ILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG  213 (225)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~  213 (225)
                      +.+..+..++      ..|+.++.++++.+..|.+.+..+..
T Consensus       137 ~~~~~~~~~~------e~Sa~~~~~v~~~f~~ia~~l~~~p~  172 (215)
T PTZ00132        137 FHRKKNLQYY------DISAKSNYNFEKPFLWLARRLTNDPN  172 (215)
T ss_pred             HHHHcCCEEE------EEeCCCCCCHHHHHHHHHHHHhhccc
Confidence            3333333332      33555667888888888777665533

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.59  E-value=7.9e-14  Score=107.32  Aligned_cols=117  Identities=13%  Similarity=0.182  Sum_probs=71.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee---CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK---DGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ++|+++|++|+|||||++.|........   .++.  ..........   .+..+.||||||+...           +..
T Consensus         1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t---~~s~--~~~~~~~~~~~~~~~~~~~l~D~pG~~~~-----------~~~   64 (203)
T cd04105           1 PTVLLLGPSDSGKTALFTKLTTGKYRST---VTSI--EPNVATFILNSEGKGKKFRLVDVPGHPKL-----------RDK   64 (203)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCCCc---cCcE--eecceEEEeecCCCCceEEEEECCCCHHH-----------HHH
Confidence            4699999999999999999997753222   1111  2222222221   3568999999997632           222


Q ss_pred             HhhcCCCc-cEEEEEEeCCCCCCHHHHHHHHHHHHHhcc----cccccEEEEEecCCCCCCC
Q 036158           97 IGMTKDGI-HAVLVVFSVRNRFSEEEGAAIHILESLFGK----KISDYMIVVFTGGDELEDN  153 (225)
Q Consensus        97 ~~~~~~~~-~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~vv~~k~D~~~~~  153 (225)
                      +..++..+ +++|||+|+.+. ........+.+..++..    ....|++++.||+|+....
T Consensus        65 ~~~~~~~~~~~vV~VvD~~~~-~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~  125 (203)
T cd04105          65 LLETLKNSAKGIVFVVDSATF-QKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAK  125 (203)
T ss_pred             HHHHHhccCCEEEEEEECccc-hhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccC
Confidence            22334455 999999999743 12222223333322211    1248999999999987553

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.59  E-value=7.7e-14  Score=100.99  Aligned_cols=153  Identities=18%  Similarity=0.158  Sum_probs=87.1

Q ss_pred             EEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee---CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158           24 LVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK---DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT  100 (225)
Q Consensus        24 v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (225)
                      ++|++|+|||||+|+|.+......   ....|. .........   .+..+.+|||||..+..           ......
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~---~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-----------~~~~~~   65 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPE---EYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFR-----------SLRRLY   65 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCc---ccccch-hheeeEEEEECCEEEEEEEEecCChHHHH-----------hHHHHH
Confidence            579999999999999998775211   112222 333333331   25679999999976431           111335


Q ss_pred             CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcE
Q 036158          101 KDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC  180 (225)
Q Consensus       101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (225)
                      ...+|++++|++.....+......+.............|+++++||+|.....  ......      ............+
T Consensus        66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~--~~~~~~------~~~~~~~~~~~~~  137 (157)
T cd00882          66 YRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEER--VVSEEE------LAEQLAKELGVPY  137 (157)
T ss_pred             hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccccc--chHHHH------HHHHHHhhcCCcE
Confidence            56789999999997443333322220111111122358999999999977553  111110      0122333334444


Q ss_pred             EEeeCCCccccccHHHHHHHHHHHH
Q 036158          181 VLFDNKTKDTAKRTEQVGKLLSLVN  205 (225)
Q Consensus       181 ~~~~~~~~~~~~~~~~v~~l~~~i~  205 (225)
                      +..+.      ..+.++.+++++|.
T Consensus       138 ~~~s~------~~~~~i~~~~~~l~  156 (157)
T cd00882         138 FETSA------KTGENVEELFEELA  156 (157)
T ss_pred             EEEec------CCCCChHHHHHHHh
Confidence            44433      34468888888774

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.59  E-value=7.5e-15  Score=103.25  Aligned_cols=116  Identities=19%  Similarity=0.213  Sum_probs=69.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCcccc--ccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFK--SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      +|+|+|.+|+|||||+++|.+.....  ........+.......... ....+.+||++|..........       .  
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~-------~--   70 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDG-DRQSLQFWDFGGQEEFYSQHQF-------F--   70 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETT-EEEEEEEEEESSSHCHHCTSHH-------H--
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecC-CceEEEEEecCccceecccccc-------h--
Confidence            68999999999999999999877541  1111223333333333332 2335889999997533211111       1  


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCC
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGD  148 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D  148 (225)
                        ...+|++++|+|..+..+-.. .+++.++...-+.....|+++|.||.|
T Consensus        71 --~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   71 --LKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             --HHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             --hhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence              224599999999974432232 234556666543333489999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd04167 Snu114p Snu114p subfamily

Probab=99.58  E-value=7.4e-15  Score=113.93  Aligned_cols=114  Identities=18%  Similarity=0.238  Sum_probs=72.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCcccccc-----------------CCCCCceeEEEEEEEEee----CCceEEEEeCCCC
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSK-----------------AGSSGVTKTCEMQRTMLK----DGQVVNVIDTPGL   79 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~-----------------~~~~~~t~~~~~~~~~~~----~~~~~~liDtPG~   79 (225)
                      +|+++|+.|+|||||+++|+........                 ....+.|.......+.+.    ....+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6899999999999999999864422110                 011223333333334332    2357999999998


Q ss_pred             CCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 036158           80 FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDEL  150 (225)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~  150 (225)
                      .++.       ..    .......+|++++|+|+.+..+....+.++.+..   .  ..|+++|+||+|..
T Consensus        82 ~~f~-------~~----~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~---~--~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFM-------DE----VAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL---E--GLPIVLVINKIDRL  136 (213)
T ss_pred             cchH-------HH----HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH---c--CCCEEEEEECcccC
Confidence            7542       11    1223346699999999976665555444443322   2  27999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK00007 elongation factor G; Reviewed

Probab=99.58  E-value=5.4e-14  Score=126.18  Aligned_cols=120  Identities=18%  Similarity=0.222  Sum_probs=89.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCcccc-----cc-----------CCCCCceeEEEEEEEEeeCCceEEEEeCCCC
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFK-----SK-----------AGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL   79 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~-----~~-----------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (225)
                      .....+|+++|+.|+|||||+|+|+......     ..           ....+.|.......+.| .+..++|+||||+
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-~~~~~~liDTPG~   85 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KDHRINIIDTPGH   85 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-CCeEEEEEeCCCc
Confidence            4456899999999999999999997322110     00           02456788777788888 7899999999998


Q ss_pred             CCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158           80 FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED  152 (225)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~  152 (225)
                      .++.       .++.    .....+|++++|+|+.......+...+..+.+.     ..|+++++||+|....
T Consensus        86 ~~f~-------~ev~----~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~-----~~p~iv~vNK~D~~~~  142 (693)
T PRK00007         86 VDFT-------IEVE----RSLRVLDGAVAVFDAVGGVEPQSETVWRQADKY-----KVPRIAFVNKMDRTGA  142 (693)
T ss_pred             HHHH-------HHHH----HHHHHcCEEEEEEECCCCcchhhHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence            6431       1222    333455999999999878888888888877663     3688999999998754

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.57  E-value=1.9e-14  Score=107.39  Aligned_cols=115  Identities=17%  Similarity=0.244  Sum_probs=70.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCccccccCCCCCc-eeEEE-----------------------------------------
Q 036158           22 LVLVGRTGNGKSATANSILGKRAFKSKAGSSGV-TKTCE-----------------------------------------   59 (225)
Q Consensus        22 i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~-t~~~~-----------------------------------------   59 (225)
                      |+|+|..++|||||||+|+|....+....+... .+...                                         
T Consensus         1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (168)
T PF00350_consen    1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE   80 (168)
T ss_dssp             EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred             CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence            789999999999999999998865543321110 00000                                         


Q ss_pred             -----------EEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHH
Q 036158           60 -----------MQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHIL  128 (225)
Q Consensus        60 -----------~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l  128 (225)
                                 ......+...++.|+||||+.+......++.       ..+.+.+|++|+|+++...++..+...+...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~-------~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~  153 (168)
T PF00350_consen   81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTEIT-------EEYLPKADVVIFVVDANQDLTESDMEFLKQM  153 (168)
T ss_dssp             TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSHHH-------HHHHSTTEEEEEEEETTSTGGGHHHHHHHHH
T ss_pred             ccccccccceeEEeeccccccceEEEeCCccccchhhhHHHH-------HHhhccCCEEEEEeccCcccchHHHHHHHHH
Confidence                       0001111334799999999986433333222       2233677999999999866666665555444


Q ss_pred             HHHhcccccccEEEEEecC
Q 036158          129 ESLFGKKISDYMIVVFTGG  147 (225)
Q Consensus       129 ~~~~~~~~~~~~~vv~~k~  147 (225)
                      ....    ...+++|+||+
T Consensus       154 ~~~~----~~~~i~V~nk~  168 (168)
T PF00350_consen  154 LDPD----KSRTIFVLNKA  168 (168)
T ss_dssp             HTTT----CSSEEEEEE-G
T ss_pred             hcCC----CCeEEEEEcCC
Confidence            4321    24689999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.57  E-value=1.1e-13  Score=124.29  Aligned_cols=120  Identities=19%  Similarity=0.206  Sum_probs=88.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCcccc-----cc-----------CCCCCceeEEEEEEEEeeCCceEEEEeCCCC
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFK-----SK-----------AGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL   79 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~-----~~-----------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (225)
                      .....+|+++|+.|+|||||+|+|+......     ..           ....+.|.......+.+ ++..+++|||||+
T Consensus         7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-~~~~i~liDTPG~   85 (689)
T TIGR00484         7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-KGHRINIIDTPGH   85 (689)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-CCeEEEEEECCCC
Confidence            4557899999999999999999997533211     00           01346777788888888 8899999999999


Q ss_pred             CCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158           80 FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED  152 (225)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~  152 (225)
                      .++.       ..+.    .+...+|++++|+|+.+.....+...+..+.+.     ..|+++++||+|....
T Consensus        86 ~~~~-------~~~~----~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-----~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        86 VDFT-------VEVE----RSLRVLDGAVAVLDAVGGVQPQSETVWRQANRY-----EVPRIAFVNKMDKTGA  142 (689)
T ss_pred             cchh-------HHHH----HHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence            8642       1122    234456999999999877777766677665542     3789999999998754

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>cd04129 Rho2 Rho2 subfamily

Probab=99.57  E-value=3.4e-13  Score=102.50  Aligned_cols=168  Identities=17%  Similarity=0.116  Sum_probs=94.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      .+|+|+|++|+|||||++++........ .  ..+........+.+ .+  ..+.+|||||........           
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~-~--~~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~-----------   66 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEE-Y--HPTVFENYVTDCRV-DGKPVQLALWDTAGQEEYERLR-----------   66 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcc-c--CCcccceEEEEEEE-CCEEEEEEEEECCCChhccccc-----------
Confidence            5899999999999999999985443211 1  11111111223333 33  357899999975432110           


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcC--CchHHHHH
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGREC--PKPLKEIL  173 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~--~~~~~~~~  173 (225)
                      ......+|++++|++.+..-+...  ..++..+....+   ..|+++|.||+|+.... ...++......  ......+.
T Consensus        67 ~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~---~~piilvgnK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~  142 (187)
T cd04129          67 PLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP---NVPVILVGLKKDLRQDA-VAKEEYRTQRFVPIQQGKRVA  142 (187)
T ss_pred             hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEeeChhhhhCc-ccccccccCCcCCHHHHHHHH
Confidence            123457899999999974322222  124445544332   38999999999975422 01111000000  01122333


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      +..+.. .    ....|++++.+++++++.+.+.....
T Consensus       143 ~~~~~~-~----~~e~Sa~~~~~v~~~f~~l~~~~~~~  175 (187)
T cd04129         143 KEIGAK-K----YMECSALTGEGVDDVFEAATRAALLV  175 (187)
T ss_pred             HHhCCc-E----EEEccCCCCCCHHHHHHHHHHHHhcc
Confidence            333321 1    12456777899999999998665443

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.57  E-value=8.4e-14  Score=108.26  Aligned_cols=160  Identities=16%  Similarity=0.141  Sum_probs=91.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT  100 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (225)
                      +|+++|+.||||||+.+.+++...... ...-+.|.......+...+...+.+||+||..+...+.-.      ......
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~d-T~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~------~~~~~i   73 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRD-TLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFN------SQREEI   73 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGG-GGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHT------CCHHHH
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchh-ccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccccc------ccHHHH
Confidence            689999999999999999997654322 1244567777777776546669999999999866432100      000112


Q ss_pred             CCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC-
Q 036158          101 KDGIHAVLVVFSVR-NRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN-  178 (225)
Q Consensus       101 ~~~~~~ii~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  178 (225)
                      ...++++|||+|+. +.+..+-..+...+...........+.|.+.|+|.+...  .-.+.... ..+.+.+.+...+. 
T Consensus        74 f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~--~r~~~~~~-~~~~i~~~~~~~~~~  150 (232)
T PF04670_consen   74 FSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSED--EREEIFRD-IQQRIRDELEDLGIE  150 (232)
T ss_dssp             HCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HH--HHHHHHHH-HHHHHHHHHHHTT-T
T ss_pred             HhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHH--HHHHHHHH-HHHHHHHHhhhcccc
Confidence            45779999999997 333333233334444433334457899999999987653  22222222 22335555555553 


Q ss_pred             cEEEeeCCCccc
Q 036158          179 RCVLFDNKTKDT  190 (225)
Q Consensus       179 ~~~~~~~~~~~~  190 (225)
                      +...|.++.++.
T Consensus       151 ~~~~~~TSI~D~  162 (232)
T PF04670_consen  151 DITFFLTSIWDE  162 (232)
T ss_dssp             SEEEEEE-TTST
T ss_pred             ceEEEeccCcCc
Confidence            367777777763

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.56  E-value=1.4e-13  Score=101.85  Aligned_cols=156  Identities=18%  Similarity=0.200  Sum_probs=93.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      +|+++|..|+|||||++++.+.... ... .+....+.....+.. ++.  .+.+||++|....        ..+.   .
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~-~~~-~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~--------~~~~---~   66 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFP-ENY-IPTIGIDSYSKEVSI-DGKPVNLEIWDTSGQERF--------DSLR---D   66 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTT-SSS-ETTSSEEEEEEEEEE-TTEEEEEEEEEETTSGGG--------HHHH---H
T ss_pred             CEEEECCCCCCHHHHHHHHHhhccc-ccc-ccccccccccccccc-cccccccccccccccccc--------cccc---c
Confidence            6899999999999999999976532 211 112112333333444 333  6999999996422        1111   2


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      .....+|++|+|++.+++-+-.. ..++..+....+  ...|++++.||.|......-..+         ..+++....+
T Consensus        67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~--~~~~iivvg~K~D~~~~~~v~~~---------~~~~~~~~~~  135 (162)
T PF00071_consen   67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP--EDIPIIVVGNKSDLSDEREVSVE---------EAQEFAKELG  135 (162)
T ss_dssp             HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST--TTSEEEEEEETTTGGGGSSSCHH---------HHHHHHHHTT
T ss_pred             cccccccccccccccccccccccccccccccccccc--ccccceeeeccccccccccchhh---------HHHHHHHHhC
Confidence            34557799999999974422222 234444444433  13799999999997653211211         1455666666


Q ss_pred             CcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                      ..|+..+      +..+.++.+++..+.+-
T Consensus       136 ~~~~e~S------a~~~~~v~~~f~~~i~~  159 (162)
T PF00071_consen  136 VPYFEVS------AKNGENVKEIFQELIRK  159 (162)
T ss_dssp             SEEEEEB------TTTTTTHHHHHHHHHHH
T ss_pred             CEEEEEE------CCCCCCHHHHHHHHHHH
Confidence            5554443      33457888888777544

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>PRK12739 elongation factor G; Reviewed

Probab=99.56  E-value=1e-13  Score=124.49  Aligned_cols=120  Identities=20%  Similarity=0.267  Sum_probs=89.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCcccc-----c-----------cCCCCCceeEEEEEEEEeeCCceEEEEeCCCC
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFK-----S-----------KAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL   79 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~-----~-----------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (225)
                      .....+|+++|+.++|||||+|+|+......     .           .....+.|.......+.| ++..++++||||+
T Consensus         5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~   83 (691)
T PRK12739          5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KGHRINIIDTPGH   83 (691)
T ss_pred             ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-CCEEEEEEcCCCH
Confidence            3456899999999999999999997532110     0           012456788888888888 8899999999997


Q ss_pred             CCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158           80 FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED  152 (225)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~  152 (225)
                      .++       ..+    +..+...+|++++|+|+.......+...+..+.+.     ..|+++++||+|....
T Consensus        84 ~~f-------~~e----~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~-----~~p~iv~iNK~D~~~~  140 (691)
T PRK12739         84 VDF-------TIE----VERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKY-----GVPRIVFVNKMDRIGA  140 (691)
T ss_pred             HHH-------HHH----HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence            642       122    33344456999999999878877777777766553     3788999999998754

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.56  E-value=5.4e-13  Score=102.00  Aligned_cols=166  Identities=13%  Similarity=0.006  Sum_probs=91.5

Q ss_pred             ceeEEEEcCCCCCHHHHHH-HHhCCcccccc-CCCCCceeE---EEE-E-------EEEee-CCceEEEEeCCCCCCCCC
Q 036158           19 ERNLVLVGRTGNGKSATAN-SILGKRAFKSK-AGSSGVTKT---CEM-Q-------RTMLK-DGQVVNVIDTPGLFDSSA   84 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin-~l~~~~~~~~~-~~~~~~t~~---~~~-~-------~~~~~-~~~~~~liDtPG~~~~~~   84 (225)
                      .++|+++|..|+|||||++ .+.+....... .....+|..   ... .       ...+. ....+.||||+|....  
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence            4789999999999999996 45433211000 001112221   110 0       01221 1347999999997521  


Q ss_pred             CcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHH---
Q 036158           85 DSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLED---  159 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~---  159 (225)
                              +   ...++..+|++|+|+|.+++.+-...  .++..+....   ...|+++|.||+|+..........   
T Consensus        80 --------~---~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~---~~~piilvgNK~DL~~~~~~~~~~~~~  145 (195)
T cd01873          80 --------D---RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC---PRVPVILVGCKLDLRYADLDEVNRARR  145 (195)
T ss_pred             --------h---hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhccccccchhhhccc
Confidence                    1   12367799999999999855444432  2445554432   237999999999975321000000   


Q ss_pred             -------HhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158          160 -------YLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNS  206 (225)
Q Consensus       160 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~  206 (225)
                             ....-..+..+++.+..+..|  +    .+||+++.+++++++.+.+
T Consensus       146 ~~~~~~~~~~~V~~~e~~~~a~~~~~~~--~----E~SAkt~~~V~e~F~~~~~  193 (195)
T cd01873         146 PLARPIKNADILPPETGRAVAKELGIPY--Y----ETSVVTQFGVKDVFDNAIR  193 (195)
T ss_pred             ccccccccCCccCHHHHHHHHHHhCCEE--E----EcCCCCCCCHHHHHHHHHH
Confidence                   000001112344555555432  2    4466777999999988865

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.55  E-value=7.5e-14  Score=117.27  Aligned_cols=170  Identities=21%  Similarity=0.260  Sum_probs=122.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCcccccc-------------CCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCC
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSK-------------AGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLF   80 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~-------------~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~   80 (225)
                      .+...+++++.+...|||||..+|+........             ....+.|...+.....+.++  ..+++|||||+.
T Consensus        57 ~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHv  136 (650)
T KOG0462|consen   57 VENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHV  136 (650)
T ss_pred             hhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcc
Confidence            366789999999999999999998865542211             12457788777777777332  689999999999


Q ss_pred             CCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHH
Q 036158           81 DSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDY  160 (225)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~  160 (225)
                      |+..       ++.+.+..+    +++|+|+|+.++..+.+...+....+.     ...++.|+||+|....   ..+..
T Consensus       137 DFs~-------EVsRslaac----~G~lLvVDA~qGvqAQT~anf~lAfe~-----~L~iIpVlNKIDlp~a---dpe~V  197 (650)
T KOG0462|consen  137 DFSG-------EVSRSLAAC----DGALLVVDASQGVQAQTVANFYLAFEA-----GLAIIPVLNKIDLPSA---DPERV  197 (650)
T ss_pred             cccc-------eehehhhhc----CceEEEEEcCcCchHHHHHHHHHHHHc-----CCeEEEeeeccCCCCC---CHHHH
Confidence            9852       233333333    999999999877776665544333332     2678999999997665   55555


Q ss_pred             hhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCC
Q 036158          161 LGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQP  215 (225)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~  215 (225)
                      ..+     +.+++..+...+.      ..||+.+.+++++++.|.+-++......
T Consensus       198 ~~q-----~~~lF~~~~~~~i------~vSAK~G~~v~~lL~AII~rVPpP~~~~  241 (650)
T KOG0462|consen  198 ENQ-----LFELFDIPPAEVI------YVSAKTGLNVEELLEAIIRRVPPPKGIR  241 (650)
T ss_pred             HHH-----HHHHhcCCccceE------EEEeccCccHHHHHHHHHhhCCCCCCCC
Confidence            555     6777776665444      3466778999999999999998876653

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.54  E-value=1e-12  Score=96.35  Aligned_cols=122  Identities=16%  Similarity=0.186  Sum_probs=91.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccc-----cCCC---CCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKS-----KAGS---SGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEF   88 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~-----~~~~---~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~   88 (225)
                      ....+|+|.|+.++||||++.++........     ....   ..+|....+....+.++..+.|+||||+.        
T Consensus         8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~--------   79 (187)
T COG2229           8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQE--------   79 (187)
T ss_pred             ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcH--------
Confidence            4568999999999999999999987664221     1112   23677778888888566899999999965        


Q ss_pred             HHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158           89 VSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN  153 (225)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~  153 (225)
                         ++.-++....+++.++|+++|...+.+....++++.+.....    .|++|++||.|+....
T Consensus        80 ---RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~----ip~vVa~NK~DL~~a~  137 (187)
T COG2229          80 ---RFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQDLFDAL  137 (187)
T ss_pred             ---HHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccC----CCEEEEeeccccCCCC
Confidence               344455556678899999998876666666777777776532    7999999999987654

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.54  E-value=1.7e-13  Score=118.87  Aligned_cols=119  Identities=14%  Similarity=0.209  Sum_probs=81.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccc--------------------cCCCCCceeEEEEEEEEeeCCceEEEEeC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKS--------------------KAGSSGVTKTCEMQRTMLKDGQVVNVIDT   76 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~--------------------~~~~~~~t~~~~~~~~~~~~~~~~~liDt   76 (225)
                      ....+|+++|+.|+|||||+++|+.......                    .....+.|.......+.+ ++..+++|||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~-~~~~inliDT   86 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-RDCLINLLDT   86 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEE-CCEEEEEEEC
Confidence            4568999999999999999999973221100                    000123445555566777 7889999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158           77 PGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED  152 (225)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~  152 (225)
                      ||+.++.       .....    +...+|++|+|+|+.++.......+++.....     ..|+++++||+|....
T Consensus        87 PG~~df~-------~~~~~----~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~-----~iPiiv~iNK~D~~~a  146 (526)
T PRK00741         87 PGHEDFS-------EDTYR----TLTAVDSALMVIDAAKGVEPQTRKLMEVCRLR-----DTPIFTFINKLDRDGR  146 (526)
T ss_pred             CCchhhH-------HHHHH----HHHHCCEEEEEEecCCCCCHHHHHHHHHHHhc-----CCCEEEEEECCccccc
Confidence            9987652       11222    23467999999999877766666666554432     3799999999997654

>TIGR00503 prfC peptide chain release factor 3

Probab=99.52  E-value=3e-13  Score=117.37  Aligned_cols=119  Identities=15%  Similarity=0.199  Sum_probs=81.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccc--c------------------CCCCCceeEEEEEEEEeeCCceEEEEeC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKS--K------------------AGSSGVTKTCEMQRTMLKDGQVVNVIDT   76 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~--~------------------~~~~~~t~~~~~~~~~~~~~~~~~liDt   76 (225)
                      ....+|+++|+.|+|||||+++|+.......  +                  ....+.|.......+.+ ++..+++|||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~-~~~~inliDT   87 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPY-RDCLVNLLDT   87 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEee-CCeEEEEEEC
Confidence            4568999999999999999999863221110  0                  00124455555666777 7889999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158           77 PGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED  152 (225)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~  152 (225)
                      ||+.++.       ....    .+...+|++|+|+|+...+......+++.+..     ...|+++++||+|....
T Consensus        88 PG~~df~-------~~~~----~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-----~~~PiivviNKiD~~~~  147 (527)
T TIGR00503        88 PGHEDFS-------EDTY----RTLTAVDNCLMVIDAAKGVETRTRKLMEVTRL-----RDTPIFTFMNKLDRDIR  147 (527)
T ss_pred             CChhhHH-------HHHH----HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh-----cCCCEEEEEECccccCC
Confidence            9986442       1122    23346799999999986666666666654443     13799999999997543

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.51  E-value=2e-12  Score=94.80  Aligned_cols=162  Identities=16%  Similarity=0.089  Sum_probs=99.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ...+++.++|.+|+|||.|+..++.....+......+.........+.- ...++.+|||.|..           .++..
T Consensus         4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~-k~IKlqiwDtaGqe-----------~frsv   71 (216)
T KOG0098|consen    4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDG-KQIKLQIWDTAGQE-----------SFRSV   71 (216)
T ss_pred             cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcC-ceEEEEEEecCCcH-----------HHHHH
Confidence            3458899999999999999999997764322221122222222222222 33489999999954           45666


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      ..+++..+.++|||.|++.+-+-. ...+|+.+++...  ...-++++.||+|+....+-+-++         -+...++
T Consensus        72 ~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~--~NmvImLiGNKsDL~~rR~Vs~EE---------GeaFA~e  140 (216)
T KOG0098|consen   72 TRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSN--ENMVIMLIGNKSDLEARREVSKEE---------GEAFARE  140 (216)
T ss_pred             HHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcC--CCcEEEEEcchhhhhccccccHHH---------HHHHHHH
Confidence            678899999999999998443322 2344555555422  235678889999976554111111         1223333


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                      .+.   .|.   .+|++++.++++.+.-+...
T Consensus       141 hgL---ifm---ETSakt~~~VEEaF~nta~~  166 (216)
T KOG0098|consen  141 HGL---IFM---ETSAKTAENVEEAFINTAKE  166 (216)
T ss_pred             cCc---eee---hhhhhhhhhHHHHHHHHHHH
Confidence            232   222   56778889999988766543

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.51  E-value=2.2e-13  Score=116.00  Aligned_cols=171  Identities=12%  Similarity=0.151  Sum_probs=104.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCcccc-ccCCCCCceeEEEEEEE---------------Eee-------------
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFK-SKAGSSGVTKTCEMQRT---------------MLK-------------   66 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~-~~~~~~~~t~~~~~~~~---------------~~~-------------   66 (225)
                      .-+.++|+++|+..+|||||+.+|++..... ......+.|....+...               .++             
T Consensus        31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (460)
T PTZ00327         31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG  110 (460)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence            3567999999999999999999999865321 11122233322221111               010             


Q ss_pred             ----CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-CCHHHHHHHHHHHHHhcccccccEE
Q 036158           67 ----DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNR-FSEEEGAAIHILESLFGKKISDYMI  141 (225)
Q Consensus        67 ----~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~  141 (225)
                          ....+.|+||||+.+           +.+.+......+|++++|+++.+. .....++.+..+. .++-   ++++
T Consensus       111 ~~~~~~~~i~~IDtPGH~~-----------fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~-~lgi---~~iI  175 (460)
T PTZ00327        111 HKMTLKRHVSFVDCPGHDI-----------LMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVE-IMKL---KHII  175 (460)
T ss_pred             ccccccceEeeeeCCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHH-HcCC---CcEE
Confidence                124789999999642           222222233477999999999854 3444555554433 3332   6789


Q ss_pred             EEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          142 VVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       142 vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      +|+||+|.....  ..++..++     +++++..+...   .....+.|+.++.++++|++.|.+.++..
T Consensus       176 VvlNKiDlv~~~--~~~~~~~e-----i~~~l~~~~~~---~~~iipVSA~~G~nI~~Ll~~L~~~lp~~  235 (460)
T PTZ00327        176 ILQNKIDLVKEA--QAQDQYEE-----IRNFVKGTIAD---NAPIIPISAQLKYNIDVVLEYICTQIPIP  235 (460)
T ss_pred             EEEecccccCHH--HHHHHHHH-----HHHHHHhhccC---CCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence            999999986432  34444444     45555432211   11234567777899999999998766544

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.51  E-value=1e-12  Score=98.21  Aligned_cols=119  Identities=18%  Similarity=0.178  Sum_probs=84.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ...++|+++|.+|+|||-|+.+++............+.....  ..+.+ ++.  +..||||.|..           +++
T Consensus        12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t--~t~~v-d~k~vkaqIWDTAGQE-----------Ryr   77 (222)
T KOG0087|consen   12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFAT--RTVNV-DGKTVKAQIWDTAGQE-----------RYR   77 (222)
T ss_pred             ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEe--eceee-cCcEEEEeeecccchh-----------hhc
Confidence            556889999999999999999999877644443333333333  23333 333  78999999953           455


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc-cccccEEEEEecCCCCC
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK-KISDYMIVVFTGGDELE  151 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~vv~~k~D~~~  151 (225)
                      .....+++++.+.++|.|++.+.+-+  .+.+||.++... +...++++|.||+|+..
T Consensus        78 AitSaYYrgAvGAllVYDITr~~Tfe--nv~rWL~ELRdhad~nivimLvGNK~DL~~  133 (222)
T KOG0087|consen   78 AITSAYYRGAVGALLVYDITRRQTFE--NVERWLKELRDHADSNIVIMLVGNKSDLNH  133 (222)
T ss_pred             cccchhhcccceeEEEEechhHHHHH--HHHHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence            66678899999999999998554433  344555554433 35678999999999875

>PRK13351 elongation factor G; Reviewed

Probab=99.51  E-value=2.5e-13  Score=122.10  Aligned_cols=127  Identities=17%  Similarity=0.186  Sum_probs=88.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccc--c--------------CCCCCceeEEEEEEEEeeCCceEEEEeCCCCC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKS--K--------------AGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF   80 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~--~--------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~   80 (225)
                      ....+|+++|+.|+|||||+++|+.......  .              ....+.|.......+.| .+..+++|||||+.
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~   84 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW-DNHRINLIDTPGHI   84 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE-CCEEEEEEECCCcH
Confidence            4568999999999999999999985321100  0              00234566666677788 78899999999986


Q ss_pred             CCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHH
Q 036158           81 DSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDY  160 (225)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~  160 (225)
                      ++.           ..+..+...+|++++|+|+.++........++.+...     ..|+++++||+|....   .+.+.
T Consensus        85 df~-----------~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~-----~~p~iiviNK~D~~~~---~~~~~  145 (687)
T PRK13351         85 DFT-----------GEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY-----GIPRLIFINKMDRVGA---DLFKV  145 (687)
T ss_pred             HHH-----------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEECCCCCCC---CHHHH
Confidence            531           2222344566999999999867766666666655442     3789999999997754   44444


Q ss_pred             hhh
Q 036158          161 LGR  163 (225)
Q Consensus       161 ~~~  163 (225)
                      +.+
T Consensus       146 ~~~  148 (687)
T PRK13351        146 LED  148 (687)
T ss_pred             HHH
Confidence            333

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.50  E-value=8.9e-13  Score=108.66  Aligned_cols=126  Identities=17%  Similarity=0.216  Sum_probs=86.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcccccc--------------CCCCC---ceeEEEE---EEEEeeCC----ceEE
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSK--------------AGSSG---VTKTCEM---QRTMLKDG----QVVN   72 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~--------------~~~~~---~t~~~~~---~~~~~~~~----~~~~   72 (225)
                      ...+.|+|+|+.++|||||||++.+.-+.+..              .+..+   +|+++.+   ..+++...    .+++
T Consensus        15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr   94 (492)
T TIGR02836        15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR   94 (492)
T ss_pred             CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence            45689999999999999999999998322111              12344   6777777   55555455    6999


Q ss_pred             EEeCCCCCCCCCCcHHHHHH----------------------HHHHHhhcCCCccEEEEEE-eCC------CCCCHHHHH
Q 036158           73 VIDTPGLFDSSADSEFVSKE----------------------IVKCIGMTKDGIHAVLVVF-SVR------NRFSEEEGA  123 (225)
Q Consensus        73 liDtPG~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~ii~v~-~~~------~~~~~~~~~  123 (225)
                      ++||+|+.+..+....-...                      .++.+   ...+++.|+|. |+.      ..+...+.+
T Consensus        95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI---~dhstIgivVtTDgsi~dI~Re~y~~aEe~  171 (492)
T TIGR02836        95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVI---QEHSTIGVVVTTDGTITDIPREDYVEAEER  171 (492)
T ss_pred             EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHH---HhcCcEEEEEEcCCCccccccccchHHHHH
Confidence            99999998755322111111                      11111   12568888887 763      356677788


Q ss_pred             HHHHHHHHhcccccccEEEEEecCCCC
Q 036158          124 AIHILESLFGKKISDYMIVVFTGGDEL  150 (225)
Q Consensus       124 ~~~~l~~~~~~~~~~~~~vv~~k~D~~  150 (225)
                      .++.|++.     .+|+++|+|+.|..
T Consensus       172 ~i~eLk~~-----~kPfiivlN~~dp~  193 (492)
T TIGR02836       172 VIEELKEL-----NKPFIILLNSTHPY  193 (492)
T ss_pred             HHHHHHhc-----CCCEEEEEECcCCC
Confidence            88888875     48999999999954

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.50  E-value=5e-13  Score=114.04  Aligned_cols=142  Identities=16%  Similarity=0.209  Sum_probs=93.3

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccc-----------------------------cccCCCCCceeEEEEEEEEee
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAF-----------------------------KSKAGSSGVTKTCEMQRTMLK   66 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~~~~   66 (225)
                      .+++++|+++|+.++|||||+.+|+.....                             .......+.|.......+++ 
T Consensus         4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~-   82 (447)
T PLN00043          4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET-   82 (447)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC-
Confidence            467899999999999999999888632110                             01112356788887788887 


Q ss_pred             CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-CC------HHHHHHHHHHHHHhccccccc
Q 036158           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNR-FS------EEEGAAIHILESLFGKKISDY  139 (225)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~-~~------~~~~~~~~~l~~~~~~~~~~~  139 (225)
                      .+..++++||||+.++           ...+......+|++|+|+|+.+. +.      ...++.+..+.. .+   .++
T Consensus        83 ~~~~i~liDtPGh~df-----------~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~-~g---i~~  147 (447)
T PLN00043         83 TKYYCTVIDAPGHRDF-----------IKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT-LG---VKQ  147 (447)
T ss_pred             CCEEEEEEECCCHHHH-----------HHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH-cC---CCc
Confidence            7889999999997543           23333445678999999999753 21      233444443333 22   146


Q ss_pred             EEEEEecCCCCCCC--cccHHHHhhhcCCchHHHHHHHcCC
Q 036158          140 MIVVFTGGDELEDN--DETLEDYLGRECPKPLKEILQLCDN  178 (225)
Q Consensus       140 ~~vv~~k~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  178 (225)
                      +++++||+|.....  ...+++..++     ++.+++..+.
T Consensus       148 iIV~vNKmD~~~~~~~~~~~~~i~~e-----i~~~l~~~g~  183 (447)
T PLN00043        148 MICCCNKMDATTPKYSKARYDEIVKE-----VSSYLKKVGY  183 (447)
T ss_pred             EEEEEEcccCCchhhhHHHHHHHHHH-----HHHHHHHcCC
Confidence            78899999965211  2245555555     7777776663

>PLN00023 GTP-binding protein; Provisional

Probab=99.50  E-value=8e-13  Score=106.83  Aligned_cols=124  Identities=18%  Similarity=0.210  Sum_probs=78.4

Q ss_pred             CCCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEE--EEEEEEee--------------CCceEEEEeC
Q 036158           13 TSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTC--EMQRTMLK--------------DGQVVNVIDT   76 (225)
Q Consensus        13 ~~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~~--------------~~~~~~liDt   76 (225)
                      ..+....++|+|+|..|+|||||++.+.+......    ...|..+  ....+.+.              ....+.||||
T Consensus        15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~----~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDT   90 (334)
T PLN00023         15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIAR----PPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDV   90 (334)
T ss_pred             cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccc----cCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEEC
Confidence            34456679999999999999999999997664221    1222222  22233331              1235899999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc----------cccccEEEEEe
Q 036158           77 PGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGK----------KISDYMIVVFT  145 (225)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~----------~~~~~~~vv~~  145 (225)
                      +|...           +..+...++.+++++|+|+|++++-+... ..+++.+......          ....|+++|.|
T Consensus        91 AGqEr-----------frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGN  159 (334)
T PLN00023         91 SGHER-----------YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGN  159 (334)
T ss_pred             CCChh-----------hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEE
Confidence            99653           33444456788999999999975433222 2234444433210          01368999999


Q ss_pred             cCCCCC
Q 036158          146 GGDELE  151 (225)
Q Consensus       146 k~D~~~  151 (225)
                      |+|+..
T Consensus       160 K~DL~~  165 (334)
T PLN00023        160 KADIAP  165 (334)
T ss_pred             Cccccc
Confidence            999754

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.49  E-value=5.4e-13  Score=109.16  Aligned_cols=144  Identities=19%  Similarity=0.278  Sum_probs=103.4

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhCCcccc-----------------------------ccCCCCCceeEEEEEEEEe
Q 036158           15 PSNGERNLVLVGRTGNGKSATANSILGKRAFK-----------------------------SKAGSSGVTKTCEMQRTML   65 (225)
Q Consensus        15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~   65 (225)
                      ..+++++++++|+..+|||||+-.|+-.....                             ......+.|.+.....++.
T Consensus         3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet   82 (428)
T COG5256           3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET   82 (428)
T ss_pred             CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence            35788999999999999999998877432110                             0112357888888888888


Q ss_pred             eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccc
Q 036158           66 KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNR-------FSEEEGAAIHILESLFGKKISD  138 (225)
Q Consensus        66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~  138 (225)
                       +...++|+|+||+-|+          +.+++ .-...+|+.|||+++...       ....+++.+ .|...+|-   .
T Consensus        83 -~k~~~tIiDaPGHrdF----------vknmI-tGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~-~La~tlGi---~  146 (428)
T COG5256          83 -DKYNFTIIDAPGHRDF----------VKNMI-TGASQADVAVLVVDARDGEFEAGFGVGGQTREHA-FLARTLGI---K  146 (428)
T ss_pred             -CCceEEEeeCCchHHH----------HHHhh-cchhhccEEEEEEECCCCccccccccCCchhHHH-HHHHhcCC---c
Confidence             7788999999997654          22222 334577999999999755       344444443 33444553   7


Q ss_pred             cEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc
Q 036158          139 YMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR  179 (225)
Q Consensus       139 ~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (225)
                      .++|++||+|...-++..+++...+     +..+++.+|..
T Consensus       147 ~lIVavNKMD~v~wde~rf~ei~~~-----v~~l~k~~G~~  182 (428)
T COG5256         147 QLIVAVNKMDLVSWDEERFEEIVSE-----VSKLLKMVGYN  182 (428)
T ss_pred             eEEEEEEcccccccCHHHHHHHHHH-----HHHHHHHcCCC
Confidence            8999999999998766677777777     77788888864

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.49  E-value=2.9e-12  Score=99.62  Aligned_cols=121  Identities=17%  Similarity=0.124  Sum_probs=77.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      ..+|+++|..|+|||||++++.+........ ....................+.+|||+|..           .+...+.
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~-----------~~~~~~~   72 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYP-PTIGNLDPAKTIEPYRRNIKLQLWDTAGQE-----------EYRSLRP   72 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCC-CceeeeeEEEEEEeCCCEEEEEeecCCCHH-----------HHHHHHH
Confidence            3899999999999999999999877532211 111111111111111013468999999954           4455666


Q ss_pred             hcCCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158           99 MTKDGIHAVLVVFSVRN--RFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN  153 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~  153 (225)
                      .++.+++++++|++...  +.......+...+....+  ...|++++.||+|+....
T Consensus        73 ~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~~~  127 (219)
T COG1100          73 EYYRGANGILIVYDSTLRESSDELTEEWLEELRELAP--DDVPILLVGNKIDLFDEQ  127 (219)
T ss_pred             HHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCC--CCceEEEEecccccccch
Confidence            77889999999999863  122222334444444332  237999999999987654

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.47  E-value=1.5e-12  Score=95.13  Aligned_cols=171  Identities=15%  Similarity=0.148  Sum_probs=104.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ...++|.++|.+|+|||||.|.+...+.........+......-..+. ..-.-+.+|||.|...+           .+.
T Consensus         7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd-~~~vtlQiWDTAGQERF-----------qsL   74 (210)
T KOG0394|consen    7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVD-DRSVTLQIWDTAGQERF-----------QSL   74 (210)
T ss_pred             ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEc-CeEEEEEEEecccHHHh-----------hhc
Confidence            345899999999999999999999877544332233322222222221 12236899999996533           222


Q ss_pred             HhhcCCCccEEEEEEeCCCC--CCHHHHHHHHHHHHHhccc-ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNR--FSEEEGAAIHILESLFGKK-ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~--~~~~~~~~~~~l~~~~~~~-~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                      -...++++|..++|.|.+..  +...+.+.-+.+...-..+ ...|.+|+.||+|........          ....+..
T Consensus        75 g~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~----------VS~~~Aq  144 (210)
T KOG0394|consen   75 GVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQ----------VSEKKAQ  144 (210)
T ss_pred             ccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccce----------eeHHHHH
Confidence            23467899999999988743  2222333333344332233 457999999999976532111          1123444


Q ss_pred             HHcC--CcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158          174 QLCD--NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG  213 (225)
Q Consensus       174 ~~~~--~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~  213 (225)
                      .+|+  ..++.|..    ||+...+|++.++-+.+..-++..
T Consensus       145 ~WC~s~gnipyfEt----SAK~~~NV~~AFe~ia~~aL~~E~  182 (210)
T KOG0394|consen  145 TWCKSKGNIPYFET----SAKEATNVDEAFEEIARRALANED  182 (210)
T ss_pred             HHHHhcCCceeEEe----cccccccHHHHHHHHHHHHHhccc
Confidence            5554  34555544    455668999999888877776654

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.47  E-value=1.5e-12  Score=95.57  Aligned_cols=165  Identities=12%  Similarity=0.071  Sum_probs=112.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ..+..+|+++|--|+||||+++.|.-.+...+     .+|.......+++ .+..+.+||.-|..           .++.
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-----vPTiGfnVE~v~y-kn~~f~vWDvGGq~-----------k~R~   76 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----VPTIGFNVETVEY-KNISFTVWDVGGQE-----------KLRP   76 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccC-----CCccccceeEEEE-cceEEEEEecCCCc-----------cccc
Confidence            56779999999999999999999886665433     4577777777888 78899999999964           3455


Q ss_pred             HHhhcCCCccEEEEEEeCCCC--CCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNR--FSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                      .+..+++..+++|||+|..++  +.....++.+.+.+--  -...|+++..||.|.....  +..+..+.      ..+-
T Consensus        77 lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~--l~~~~llv~aNKqD~~~al--s~~ei~~~------L~l~  146 (181)
T KOG0070|consen   77 LWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPE--LRNAPLLVFANKQDLPGAL--SAAEITNK------LGLH  146 (181)
T ss_pred             chhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcc--cCCceEEEEechhhccccC--CHHHHHhH------hhhh
Confidence            566788899999999998743  2222222333332211  1247999999999977654  44443322      2222


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      +-++..++.-..    .|.++.++.+-++++.+.+...
T Consensus       147 ~l~~~~w~iq~~----~a~~G~GL~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  147 SLRSRNWHIQST----CAISGEGLYEGLDWLSNNLKKR  180 (181)
T ss_pred             ccCCCCcEEeec----cccccccHHHHHHHHHHHHhcc
Confidence            333344443333    3456799999999998877653

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.46  E-value=3.4e-12  Score=90.18  Aligned_cols=154  Identities=19%  Similarity=0.238  Sum_probs=98.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCce--eEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVT--KTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      -++|+++|..|+|||-|++.++..- ++.   ..+.|  .+.....+++ ++.  ++.+|||.|.           +.++
T Consensus         7 lfkivlvgnagvgktclvrrftqgl-fpp---gqgatigvdfmiktvev-~gekiklqiwdtagq-----------erfr   70 (213)
T KOG0095|consen    7 LFKIVLVGNAGVGKTCLVRRFTQGL-FPP---GQGATIGVDFMIKTVEV-NGEKIKLQIWDTAGQ-----------ERFR   70 (213)
T ss_pred             eEEEEEEccCCcCcchhhhhhhccC-CCC---CCCceeeeeEEEEEEEE-CCeEEEEEEeeccch-----------HHHH
Confidence            4789999999999999999988544 333   22333  3444556666 443  7999999994           4566


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCH-HHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSE-EEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                      ....++++.+|++|+|.|+....+- -..+++..+.++....  .--++|.||.|+....  .+.+...+        -+
T Consensus        71 sitqsyyrsahalilvydiscqpsfdclpewlreie~yan~k--vlkilvgnk~d~~drr--evp~qige--------ef  138 (213)
T KOG0095|consen   71 SITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNK--VLKILVGNKIDLADRR--EVPQQIGE--------EF  138 (213)
T ss_pred             HHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcc--eEEEeeccccchhhhh--hhhHHHHH--------HH
Confidence            7777888899999999999733222 2345667777765443  4458899999975443  22222222        11


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHH
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVN  205 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~  205 (225)
                      ...  +.+.|   ..+||+...+++.|+.-+.
T Consensus       139 s~~--qdmyf---letsakea~nve~lf~~~a  165 (213)
T KOG0095|consen  139 SEA--QDMYF---LETSAKEADNVEKLFLDLA  165 (213)
T ss_pred             HHh--hhhhh---hhhcccchhhHHHHHHHHH
Confidence            111  11122   2345556688888876554

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.46  E-value=3.3e-12  Score=90.10  Aligned_cols=160  Identities=16%  Similarity=0.197  Sum_probs=101.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc-eEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ-VVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      ++.+++|.+|+|||||+-.+..... .. +....+..+.....+.+++.+ .+.||||+|.           +.++.+.+
T Consensus         9 fkllIigDsgVGKssLl~rF~ddtF-s~-sYitTiGvDfkirTv~i~G~~VkLqIwDtAGq-----------ErFrtits   75 (198)
T KOG0079|consen    9 FKLLIIGDSGVGKSSLLLRFADDTF-SG-SYITTIGVDFKIRTVDINGDRVKLQIWDTAGQ-----------ERFRTITS   75 (198)
T ss_pred             HHHHeecCCcccHHHHHHHHhhccc-cc-ceEEEeeeeEEEEEeecCCcEEEEEEeecccH-----------HHHHHHHH
Confidence            5678999999999999977765542 22 222223344455566663333 7999999993           56777778


Q ss_pred             hcCCCccEEEEEEeCCCCCCH-HHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158           99 MTKDGIHAVLVVFSVRNRFSE-EEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      .++.++|++++|.|.+..-+- .-.++++.++..+.+   .|-++|.||.|..+..  .+..       +..+......+
T Consensus        76 tyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncds---v~~vLVGNK~d~~~Rr--vV~t-------~dAr~~A~~mg  143 (198)
T KOG0079|consen   76 TYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDS---VPKVLVGNKNDDPERR--VVDT-------EDARAFALQMG  143 (198)
T ss_pred             HHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCcc---ccceecccCCCCccce--eeeh-------HHHHHHHHhcC
Confidence            889999999999999743221 124566666665543   7889999999976543  1111       11233333333


Q ss_pred             CcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      ..      ...+|++...++++.+.-|.+.+..
T Consensus       144 ie------~FETSaKe~~NvE~mF~cit~qvl~  170 (198)
T KOG0079|consen  144 IE------LFETSAKENENVEAMFHCITKQVLQ  170 (198)
T ss_pred             ch------heehhhhhcccchHHHHHHHHHHHH
Confidence            32      2344556667888887777655544

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.45  E-value=2.6e-12  Score=107.78  Aligned_cols=89  Identities=19%  Similarity=0.168  Sum_probs=62.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee--------------------C---CceEEEEeC
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK--------------------D---GQVVNVIDT   76 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--------------------~---~~~~~liDt   76 (225)
                      ++|+++|.+|+|||||+|+|++....  ....+.+|..+.......+                    +   ...+.++||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~--~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~   79 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVE--IANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV   79 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCccc--ccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence            58999999999999999999988752  2345666666655443210                    1   136889999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 036158           77 PGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVR  114 (225)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~  114 (225)
                      ||+.........+...+.+.+.    .+|++++|+|..
T Consensus        80 aGl~~ga~~g~glg~~fL~~ir----~ad~ll~Vvd~~  113 (396)
T PRK09602         80 AGLVPGAHEGRGLGNQFLDDLR----QADALIHVVDAS  113 (396)
T ss_pred             CCcCCCccchhhHHHHHHHHHH----HCCEEEEEEeCC
Confidence            9998654444445555554443    559999999984

>cd01882 BMS1 Bms1

Probab=99.45  E-value=1.7e-11  Score=95.74  Aligned_cols=160  Identities=16%  Similarity=0.195  Sum_probs=93.4

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ..+...|+++|.+|+|||||+|+|++...........+ +  .   .+..+.+..++++||||..          ..+..
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~--i---~i~~~~~~~i~~vDtPg~~----------~~~l~   99 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-P--I---TVVTGKKRRLTFIECPNDI----------NAMID   99 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-c--E---EEEecCCceEEEEeCCchH----------HHHHH
Confidence            35567899999999999999999987632111111111 1  1   1111267789999999842          12222


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccccc-EEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDY-MIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      .    ...+|++++|+|+.......+..++..+...     ..| +++|+||+|..... ...++...+     +++.+.
T Consensus       100 ~----ak~aDvVllviDa~~~~~~~~~~i~~~l~~~-----g~p~vi~VvnK~D~~~~~-~~~~~~~~~-----l~~~~~  164 (225)
T cd01882         100 I----AKVADLVLLLIDASFGFEMETFEFLNILQVH-----GFPRVMGVLTHLDLFKKN-KTLRKTKKR-----LKHRFW  164 (225)
T ss_pred             H----HHhcCEEEEEEecCcCCCHHHHHHHHHHHHc-----CCCeEEEEEeccccCCcH-HHHHHHHHH-----HHHHHH
Confidence            2    2456999999999867777777777776652     245 45599999987542 234444333     443221


Q ss_pred             --Hc-CCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          175 --LC-DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       175 --~~-~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                        .. +.+++.++...+.. -...+...++..|..+
T Consensus       165 ~~~~~~~ki~~iSa~~~~~-~~~~e~~~~~r~i~~~  199 (225)
T cd01882         165 TEVYQGAKLFYLSGIVHGR-YPKTEIHNLARFISVM  199 (225)
T ss_pred             HhhCCCCcEEEEeeccCCC-CCHHHHHHHHHHHHhC
Confidence              11 24566665433311 1124445555555433

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PTZ00416 elongation factor 2; Provisional

Probab=99.45  E-value=8.8e-13  Score=120.35  Aligned_cols=119  Identities=17%  Similarity=0.196  Sum_probs=82.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCcccccc--------------CCCCCceeEEEEEEEEee---------CCceEE
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSK--------------AGSSGVTKTCEMQRTMLK---------DGQVVN   72 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~~---------~~~~~~   72 (225)
                      .....+|+++|+.++|||||+++|+........              ....+.|.......+.|.         .+..++
T Consensus        16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence            455679999999999999999999864422110              011233433333344442         145799


Q ss_pred             EEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 036158           73 VIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDEL  150 (225)
Q Consensus        73 liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~  150 (225)
                      |+||||+.++           ...+..+...+|++|+|+|+..++...+...++.+.+.     ..|+++++||+|..
T Consensus        96 liDtPG~~~f-----------~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~-----~~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVDF-----------SSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQE-----RIRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHhH-----------HHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHc-----CCCEEEEEEChhhh
Confidence            9999998753           22233445677999999999878888887777766653     26999999999986

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.42  E-value=3.4e-12  Score=104.12  Aligned_cols=87  Identities=18%  Similarity=0.195  Sum_probs=58.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-----------------------CCceEEEEeCCC
Q 036158           22 LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-----------------------DGQVVNVIDTPG   78 (225)
Q Consensus        22 i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------------~~~~~~liDtPG   78 (225)
                      |+++|.+|+|||||+|+|++... .. ...+.+|..+......++                       ...++.+|||||
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~-~~-~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG   78 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADV-EI-ANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG   78 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCC-cc-cCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence            58999999999999999998774 22 334556655554333220                       124799999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 036158           79 LFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVR  114 (225)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~  114 (225)
                      +.........+...+...+    ..+|++++|+|..
T Consensus        79 lv~ga~~~~glg~~fL~~i----r~aD~ii~Vvd~~  110 (318)
T cd01899          79 LVPGAHEGKGLGNKFLDDL----RDADALIHVVDAS  110 (318)
T ss_pred             CCCCccchhhHHHHHHHHH----HHCCEEEEEEeCC
Confidence            9755433333444444443    4559999999985

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.41  E-value=7.1e-12  Score=103.82  Aligned_cols=174  Identities=16%  Similarity=0.262  Sum_probs=117.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccc--------------cCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKS--------------KAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDS   82 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (225)
                      .+..+|+++.+...|||||+..|+.++..-.              .....+.|.-..-..+.| ++..|+++||||+-|+
T Consensus         3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~-~~~~INIvDTPGHADF   81 (603)
T COG1217           3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNY-NGTRINIVDTPGHADF   81 (603)
T ss_pred             cccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeec-CCeEEEEecCCCcCCc
Confidence            3457899999999999999999997664211              111356787777778888 8999999999999998


Q ss_pred             CCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhh
Q 036158           83 SADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLG  162 (225)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~  162 (225)
                      ...-+       +.+++    +|.+++++|+.+..-+.++-.++...+.     ..+.+||+||+|....   ..++.+.
T Consensus        82 GGEVE-------Rvl~M----VDgvlLlVDA~EGpMPQTrFVlkKAl~~-----gL~PIVVvNKiDrp~A---rp~~Vvd  142 (603)
T COG1217          82 GGEVE-------RVLSM----VDGVLLLVDASEGPMPQTRFVLKKALAL-----GLKPIVVINKIDRPDA---RPDEVVD  142 (603)
T ss_pred             cchhh-------hhhhh----cceEEEEEEcccCCCCchhhhHHHHHHc-----CCCcEEEEeCCCCCCC---CHHHHHH
Confidence            64333       22222    3999999999877666676666544432     2566889999997765   4444444


Q ss_pred             hcCCchHHHHH-------HHcCCcEEEeeCCC----ccccccHHHHHHHHHHHHHHHHHcCCCC
Q 036158          163 RECPKPLKEIL-------QLCDNRCVLFDNKT----KDTAKRTEQVGKLLSLVNSVIVQNGGQP  215 (225)
Q Consensus       163 ~~~~~~~~~~~-------~~~~~~~~~~~~~~----~~~~~~~~~v~~l~~~i~~~~~~~~~~~  215 (225)
                      +     ...++       +++..++.+-+...    .+......++..|++.|.++++...+..
T Consensus       143 ~-----vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~  201 (603)
T COG1217         143 E-----VFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDL  201 (603)
T ss_pred             H-----HHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCCC
Confidence            4     33333       33444544433211    1122334678999999999998877643

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.40  E-value=8.8e-12  Score=104.06  Aligned_cols=134  Identities=19%  Similarity=0.211  Sum_probs=96.0

Q ss_pred             CCCCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHH
Q 036158           12 PTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSK   91 (225)
Q Consensus        12 ~~~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~   91 (225)
                      +++...+..+++|+|-+|+|||||+|.++...+  ....+..+|.......+.+ ....+.++||||+.|....+.-+.+
T Consensus       161 lPsIDp~trTlllcG~PNVGKSSf~~~vtradv--evqpYaFTTksL~vGH~dy-kYlrwQViDTPGILD~plEdrN~IE  237 (620)
T KOG1490|consen  161 LPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD--EVQPYAFTTKLLLVGHLDY-KYLRWQVIDTPGILDRPEEDRNIIE  237 (620)
T ss_pred             CCCCCCCcCeEEEecCCCCCcHhhccccccccc--ccCCcccccchhhhhhhhh-heeeeeecCCccccCcchhhhhHHH
Confidence            345567789999999999999999999998775  3334566676666666666 6678999999999976543332222


Q ss_pred             HHHHHHhhcCCCccEEEEEEeCCC--CCCHH-HHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158           92 EIVKCIGMTKDGIHAVLVVFSVRN--RFSEE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDN  153 (225)
Q Consensus        92 ~~~~~~~~~~~~~~~ii~v~~~~~--~~~~~-~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~  153 (225)
                      .. .....+ +---+|+|++|.+.  +.+.+ +..++..++.+|..   +|+++|+||+|.+.++
T Consensus       238 mq-sITALA-HLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaN---K~~IlvlNK~D~m~~e  297 (620)
T KOG1490|consen  238 MQ-IITALA-HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFAN---KVTILVLNKIDAMRPE  297 (620)
T ss_pred             HH-HHHHHH-HhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcC---CceEEEeecccccCcc
Confidence            11 111111 11257889988863  34444 46788999999977   8999999999999876

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.40  E-value=2.8e-12  Score=95.78  Aligned_cols=120  Identities=16%  Similarity=0.219  Sum_probs=66.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEE--eeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTM--LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ...|+++|++|+|||+|+..|.......+      .|.........  ...+..+.|+|+||+...+   .+..+.+.  
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T------~tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr---~~~~~~~~--   71 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPT------VTSMENNIAYNVNNSKGKKLRLVDIPGHPRLR---SKLLDELK--   71 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---------SSEEEECCGSSTCGTCECEEEETT-HCCC---HHHHHHHH--
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCe------eccccCCceEEeecCCCCEEEEEECCCcHHHH---HHHHHhhh--
Confidence            46899999999999999999987643221      22211111111  1245689999999987442   22222221  


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc----cccccEEEEEecCCCCCCC
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK----KISDYMIVVFTGGDELEDN  153 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~vv~~k~D~~~~~  153 (225)
                         +...+-+||||+|+. .....-.+..+.|..++..    ....|++|+.||.|.....
T Consensus        72 ---~~~~~k~IIfvvDSs-~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~  128 (181)
T PF09439_consen   72 ---YLSNAKGIIFVVDSS-TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK  128 (181)
T ss_dssp             ---HHGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred             ---chhhCCEEEEEEeCc-cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence               234579999999986 2222223333333333322    2357999999999987654

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.39  E-value=1.8e-12  Score=88.96  Aligned_cols=142  Identities=20%  Similarity=0.243  Sum_probs=90.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (225)
                      .+|+++|..|+|||||.++|.|......      .|     ..+++ ++.  -.|||||.+-.       .+.+..++.-
T Consensus         2 Kri~~vG~~gcGKTtL~q~L~G~~~lyk------KT-----QAve~-~d~--~~IDTPGEy~~-------~~~~Y~aL~t   60 (148)
T COG4917           2 KRIAFVGQVGCGKTTLFQSLYGNDTLYK------KT-----QAVEF-NDK--GDIDTPGEYFE-------HPRWYHALIT   60 (148)
T ss_pred             ceeEEecccccCchhHHHHhhcchhhhc------cc-----ceeec-cCc--cccCCchhhhh-------hhHHHHHHHH
Confidence            4799999999999999999999875322      12     23344 222  15999996521       2344455555


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc
Q 036158          100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR  179 (225)
Q Consensus       100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (225)
                      ....+|++++|..++++-+.--..++        .-..++++-|+||+|+.++.  .++.         .++.+...|..
T Consensus        61 t~~dadvi~~v~~and~~s~f~p~f~--------~~~~k~vIgvVTK~DLaed~--dI~~---------~~~~L~eaGa~  121 (148)
T COG4917          61 TLQDADVIIYVHAANDPESRFPPGFL--------DIGVKKVIGVVTKADLAEDA--DISL---------VKRWLREAGAE  121 (148)
T ss_pred             HhhccceeeeeecccCccccCCcccc--------cccccceEEEEecccccchH--hHHH---------HHHHHHHcCCc
Confidence            66788999999988754222111111        11235799999999988653  4333         35556666654


Q ss_pred             EEEeeCCCccccccHHHHHHHHHHHHH
Q 036158          180 CVLFDNKTKDTAKRTEQVGKLLSLVNS  206 (225)
Q Consensus       180 ~~~~~~~~~~~~~~~~~v~~l~~~i~~  206 (225)
                      ..+..+     +....++++|++++..
T Consensus       122 ~IF~~s-----~~d~~gv~~l~~~L~~  143 (148)
T COG4917         122 PIFETS-----AVDNQGVEELVDYLAS  143 (148)
T ss_pred             ceEEEe-----ccCcccHHHHHHHHHh
Confidence            443332     2344899999998854

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.39  E-value=2.5e-12  Score=117.61  Aligned_cols=119  Identities=17%  Similarity=0.226  Sum_probs=82.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCcccccc--------------CCCCCceeEEEEEEEEee---------------
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSK--------------AGSSGVTKTCEMQRTMLK---------------   66 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~~---------------   66 (225)
                      .....+|+|+|+.++|||||+++|+........              ....+.|.......+.|.               
T Consensus        16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~   95 (843)
T PLN00116         16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG   95 (843)
T ss_pred             ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence            456789999999999999999999855432111              011234444444444442               


Q ss_pred             CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 036158           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTG  146 (225)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k  146 (225)
                      .+..++|+||||+.++.       .++    ......+|++|+|+|+..+....+...++.+...     ..|+++++||
T Consensus        96 ~~~~inliDtPGh~dF~-------~e~----~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~-----~~p~i~~iNK  159 (843)
T PLN00116         96 NEYLINLIDSPGHVDFS-------SEV----TAALRITDGALVVVDCIEGVCVQTETVLRQALGE-----RIRPVLTVNK  159 (843)
T ss_pred             CceEEEEECCCCHHHHH-------HHH----HHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHC-----CCCEEEEEEC
Confidence            25578999999987551       222    2334566999999999878887777777766553     3789999999


Q ss_pred             CCCC
Q 036158          147 GDEL  150 (225)
Q Consensus       147 ~D~~  150 (225)
                      +|..
T Consensus       160 ~D~~  163 (843)
T PLN00116        160 MDRC  163 (843)
T ss_pred             Cccc
Confidence            9987

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=3.3e-12  Score=110.00  Aligned_cols=131  Identities=24%  Similarity=0.327  Sum_probs=92.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEE------------------------------------
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEM------------------------------------   60 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~------------------------------------   60 (225)
                      ....+|+++|.+++||||++|+++..++.+...   ++|+.|..                                    
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~---gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~  183 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGI---GHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPD  183 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccc---cccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcc
Confidence            446889999999999999999999888655422   22222211                                    


Q ss_pred             --------EEEEeeCCc------eEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHH
Q 036158           61 --------QRTMLKDGQ------VVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIH  126 (225)
Q Consensus        61 --------~~~~~~~~~------~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~  126 (225)
                              ..+.||.+.      .+.++|.||++-..        +...++......+|++|||+.+...++..+++++.
T Consensus       184 ~~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~s--------e~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~  255 (749)
T KOG0448|consen  184 KDLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDS--------ELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFH  255 (749)
T ss_pred             cccCcceEEEEEecCccchhhhccceeccCCCCCCch--------hhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHH
Confidence                    224444441      58999999997432        23334445666889999999998788888888887


Q ss_pred             HHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhh
Q 036158          127 ILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR  163 (225)
Q Consensus       127 ~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~  163 (225)
                      ...+.     ++++.|+.||||...+.++-.++...+
T Consensus       256 ~vs~~-----KpniFIlnnkwDasase~ec~e~V~~Q  287 (749)
T KOG0448|consen  256 KVSEE-----KPNIFILNNKWDASASEPECKEDVLKQ  287 (749)
T ss_pred             Hhhcc-----CCcEEEEechhhhhcccHHHHHHHHHH
Confidence            66653     478999999999887654455555444

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.38  E-value=2.1e-12  Score=116.40  Aligned_cols=119  Identities=16%  Similarity=0.224  Sum_probs=78.4

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccc--------------cccCCCCCceeEEEEE----EEEeeCCceEEEEeCC
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAF--------------KSKAGSSGVTKTCEMQ----RTMLKDGQVVNVIDTP   77 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~--------------~~~~~~~~~t~~~~~~----~~~~~~~~~~~liDtP   77 (225)
                      .....+|+++|+.++|||||+++|+.....              .......+.|......    .+.+ .+..++|||||
T Consensus        16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~-~~~~i~liDTP   94 (720)
T TIGR00490        16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEG-NEYLINLIDTP   94 (720)
T ss_pred             cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecC-CceEEEEEeCC
Confidence            345689999999999999999998743110              0101112334333222    2445 56789999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158           78 GLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELE  151 (225)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~  151 (225)
                      |+.++.       ....    .+...+|++|+|+|+.......+...++.+.+.     ..|.++++||+|...
T Consensus        95 G~~~f~-------~~~~----~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~~  152 (720)
T TIGR00490        95 GHVDFG-------GDVT----RAMRAVDGAIVVVCAVEGVMPQTETVLRQALKE-----NVKPVLFINKVDRLI  152 (720)
T ss_pred             CccccH-------HHHH----HHHHhcCEEEEEEecCCCCCccHHHHHHHHHHc-----CCCEEEEEEChhccc
Confidence            998752       1122    234466999999999767666666666554332     257789999999764

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PTZ00258 GTP-binding protein; Provisional

Probab=99.38  E-value=4.9e-12  Score=105.27  Aligned_cols=92  Identities=17%  Similarity=0.260  Sum_probs=69.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc----------------eEEEEeCCCC
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ----------------VVNVIDTPGL   79 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~----------------~~~liDtPG~   79 (225)
                      ....++|+++|.+|+|||||+|+|++...  .....+++|..+....+.+++.+                .+.++||||+
T Consensus        18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~--~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGL   95 (390)
T PTZ00258         18 PGNNLKMGIVGLPNVGKSTTFNALCKQQV--PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGL   95 (390)
T ss_pred             CCCCcEEEEECCCCCChHHHHHHHhcCcc--cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCc
Confidence            35678999999999999999999998775  33346788888888777764322                4899999999


Q ss_pred             CCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeC
Q 036158           80 FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSV  113 (225)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~  113 (225)
                      .........+...+...+    ..+|++++|+|.
T Consensus        96 v~ga~~g~gLg~~fL~~I----r~aD~il~VVd~  125 (390)
T PTZ00258         96 VKGASEGEGLGNAFLSHI----RAVDGIYHVVRA  125 (390)
T ss_pred             CcCCcchhHHHHHHHHHH----HHCCEEEEEEeC
Confidence            866554455555555544    355999999997

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.38  E-value=3.7e-12  Score=89.78  Aligned_cols=164  Identities=15%  Similarity=0.116  Sum_probs=101.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ...+.+.++|--++||||++|.+......    .....|.....+.+.- +...+.+||.||..           .++.+
T Consensus        18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~----edmiptvGfnmrk~tk-gnvtiklwD~gGq~-----------rfrsm   81 (186)
T KOG0075|consen   18 KEEMELSLVGLQNSGKTTLVNVIARGQYL----EDMIPTVGFNMRKVTK-GNVTIKLWDLGGQP-----------RFRSM   81 (186)
T ss_pred             HheeeEEEEeeccCCcceEEEEEeeccch----hhhcccccceeEEecc-CceEEEEEecCCCc-----------cHHHH
Confidence            35688999999999999999998854421    1223455555555543 56689999999964           45667


Q ss_pred             HhhcCCCccEEEEEEeCCCC--CCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNR--FSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      +..+++++++++||+|+.++  ++..-.++...+.+-  .=...|++|+.||.|....-  ...+...+      -.+..
T Consensus        82 WerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~--~l~gip~LVLGnK~d~~~AL--~~~~li~r------mgL~s  151 (186)
T KOG0075|consen   82 WERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKP--SLTGIPLLVLGNKIDLPGAL--SKIALIER------MGLSS  151 (186)
T ss_pred             HHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcch--hhcCCcEEEecccccCcccc--cHHHHHHH------hCccc
Confidence            77888999999999998632  333333333333221  11347999999999976553  32222222      11111


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      -....++-|.    .|.+...+++..++++.+.-+.
T Consensus       152 itdREvcC~s----iScke~~Nid~~~~Wli~hsk~  183 (186)
T KOG0075|consen  152 ITDREVCCFS----ISCKEKVNIDITLDWLIEHSKS  183 (186)
T ss_pred             cccceEEEEE----EEEcCCccHHHHHHHHHHHhhh
Confidence            1112233232    2334458899999999776544

>cd01900 YchF YchF subfamily

Probab=99.38  E-value=3.8e-12  Score=101.55  Aligned_cols=86  Identities=20%  Similarity=0.244  Sum_probs=65.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc----------------eEEEEeCCCCCCCCCC
Q 036158           22 LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ----------------VVNVIDTPGLFDSSAD   85 (225)
Q Consensus        22 i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~----------------~~~liDtPG~~~~~~~   85 (225)
                      |+++|.+|+|||||+|+|++...  .....+++|.......+.+++.+                .+.++||||+......
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~--~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~   78 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGA--EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   78 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCC--ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence            58999999999999999999886  23446788888887777774432                4999999999976555


Q ss_pred             cHHHHHHHHHHHhhcCCCccEEEEEEeC
Q 036158           86 SEFVSKEIVKCIGMTKDGIHAVLVVFSV  113 (225)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~ii~v~~~  113 (225)
                      ...+...+...+    ..+|++++|+++
T Consensus        79 ~~glg~~fL~~i----~~~D~li~VV~~  102 (274)
T cd01900          79 GEGLGNKFLSHI----REVDAIAHVVRC  102 (274)
T ss_pred             hhHHHHHHHHHH----HhCCEEEEEEeC
Confidence            555555555443    356999999986

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.37  E-value=1.5e-10  Score=81.82  Aligned_cols=162  Identities=12%  Similarity=0.088  Sum_probs=96.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEE-EeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRT-MLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      ..+++++|.+.+|||||+-+..+...-..-.  .....+.....+ +......+.+|||.|..           .++...
T Consensus        21 mfKlliiGnssvGKTSfl~ry~ddSFt~afv--sTvGidFKvKTvyr~~kRiklQiwDTagqE-----------ryrtiT   87 (193)
T KOG0093|consen   21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFV--STVGIDFKVKTVYRSDKRIKLQIWDTAGQE-----------RYRTIT   87 (193)
T ss_pred             eeeEEEEccCCccchhhhHHhhcccccccee--eeeeeeEEEeEeeecccEEEEEEEecccch-----------hhhHHH
Confidence            4689999999999999999999877432211  111222222222 22122379999999964           244444


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      -.++++++++|++.|+...-+-. -..+...++...  -...|+++|.||+|.-...  .+.       .+..+.++++.
T Consensus        88 TayyRgamgfiLmyDitNeeSf~svqdw~tqIktys--w~naqvilvgnKCDmd~eR--vis-------~e~g~~l~~~L  156 (193)
T KOG0093|consen   88 TAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYS--WDNAQVILVGNKCDMDSER--VIS-------HERGRQLADQL  156 (193)
T ss_pred             HHHhhccceEEEEEecCCHHHHHHHHHHHHHheeee--ccCceEEEEecccCCccce--eee-------HHHHHHHHHHh
Confidence            56788999999999997321111 122333333331  1357999999999964332  111       12245566666


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      |..+      ..+|++...+++++++++...+-+
T Consensus       157 Gfef------FEtSaK~NinVk~~Fe~lv~~Ic~  184 (193)
T KOG0093|consen  157 GFEF------FETSAKENINVKQVFERLVDIICD  184 (193)
T ss_pred             ChHH------hhhcccccccHHHHHHHHHHHHHH
Confidence            6532      234455557777777777655544

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.36  E-value=1.4e-11  Score=88.39  Aligned_cols=162  Identities=17%  Similarity=0.133  Sum_probs=102.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEE--EEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQ--RTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ++++.|+|.+-+|||+|+..++..+...-.    .+|...+..  .+++.+|  .++.||||.|.           +.++
T Consensus         8 qfrlivigdstvgkssll~~ft~gkfaels----dptvgvdffarlie~~pg~riklqlwdtagq-----------erfr   72 (213)
T KOG0091|consen    8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELS----DPTVGVDFFARLIELRPGYRIKLQLWDTAGQ-----------ERFR   72 (213)
T ss_pred             EEEEEEEcCCcccHHHHHHHHhcCcccccC----CCccchHHHHHHHhcCCCcEEEEEEeeccch-----------HHHH
Confidence            578999999999999999999977643221    222222221  1222233  37899999994           5677


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEEGA-AIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                      ...++++++.-++++|.|++.+.+-+..+ +++..+-..+...+.-.++|.+|.|+....+-+-++         .+.+.
T Consensus        73 sitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EE---------aEklA  143 (213)
T KOG0091|consen   73 SITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEE---------AEKLA  143 (213)
T ss_pred             HHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHH---------HHHHH
Confidence            77888999999999999998665544433 223333233322333456778899976443222221         45566


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      ..||-.+.      .+|++++.++++....|.+-+..
T Consensus       144 a~hgM~FV------ETSak~g~NVeEAF~mlaqeIf~  174 (213)
T KOG0091|consen  144 ASHGMAFV------ETSAKNGCNVEEAFDMLAQEIFQ  174 (213)
T ss_pred             HhcCceEE------EecccCCCcHHHHHHHHHHHHHH
Confidence            66664322      44566778999888887765543

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.36  E-value=7.3e-12  Score=103.11  Aligned_cols=88  Identities=19%  Similarity=0.219  Sum_probs=66.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC----------------ceEEEEeCCCCCCCC
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG----------------QVVNVIDTPGLFDSS   83 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~liDtPG~~~~~   83 (225)
                      ++|+++|.+|+|||||+|+|++...  .....+++|..+....+.+++.                ..+.++||||+....
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~--~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a   80 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGA--EAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA   80 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC--eecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence            6899999999999999999999884  2234677887887766666432                149999999998755


Q ss_pred             CCcHHHHHHHHHHHhhcCCCccEEEEEEeC
Q 036158           84 ADSEFVSKEIVKCIGMTKDGIHAVLVVFSV  113 (225)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~  113 (225)
                      ...+.+...+...+    ..+|++++|+|+
T Consensus        81 ~~g~glg~~fL~~i----~~aD~li~VVd~  106 (364)
T PRK09601         81 SKGEGLGNQFLANI----REVDAIVHVVRC  106 (364)
T ss_pred             ChHHHHHHHHHHHH----HhCCEEEEEEeC
Confidence            44444555555443    456999999997

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=99.36  E-value=3.2e-12  Score=99.54  Aligned_cols=176  Identities=14%  Similarity=0.097  Sum_probs=105.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccc-cCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcH--HHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKS-KAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSE--FVSKE   92 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~   92 (225)
                      ....+++++.|.+|+|||||||.++....... +...++.|...+...    -+.+++++|.||++.+....+  +-+..
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~----v~~~~~~vDlPG~~~a~y~~~~~~d~~~  208 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH----VGKSWYEVDLPGYGRAGYGFELPADWDK  208 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee----ccceEEEEecCCcccccCCccCcchHhH
Confidence            46679999999999999999999998764332 222555566555443    377899999999664432211  11222


Q ss_pred             HH-HHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158           93 IV-KCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE  171 (225)
Q Consensus        93 ~~-~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~  171 (225)
                      +. .+..... ..--+++.+|++-++...|...+.++.+.     ..|+.+|+||+|+..+-......... +....++.
T Consensus       209 ~t~~Y~leR~-nLv~~FLLvd~sv~i~~~D~~~i~~~ge~-----~VP~t~vfTK~DK~k~~~~~~kKp~~-~i~~~f~~  281 (320)
T KOG2486|consen  209 FTKSYLLERE-NLVRVFLLVDASVPIQPTDNPEIAWLGEN-----NVPMTSVFTKCDKQKKVKRTGKKPGL-NIKINFQG  281 (320)
T ss_pred             hHHHHHHhhh-hhheeeeeeeccCCCCCCChHHHHHHhhc-----CCCeEEeeehhhhhhhccccccCccc-cceeehhh
Confidence            22 2222222 33344555566556667777888888874     38999999999987553111111111 12223444


Q ss_pred             HHHHcCCcEEEeeCCCc---cccccHHHHHHHHHHHHHHH
Q 036158          172 ILQLCDNRCVLFDNKTK---DTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       172 ~~~~~~~~~~~~~~~~~---~~~~~~~~v~~l~~~i~~~~  208 (225)
                      +++.|-      ....+   .|+.+..+++.|+-.|.+..
T Consensus       282 l~~~~f------~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~~  315 (320)
T KOG2486|consen  282 LIRGVF------LVDLPWIYVSSVTSLGRDLLLLHIAQLR  315 (320)
T ss_pred             ccccce------eccCCceeeecccccCceeeeeehhhhh
Confidence            554432      22222   45566688888887776543

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.36  E-value=2.4e-11  Score=107.75  Aligned_cols=121  Identities=21%  Similarity=0.256  Sum_probs=92.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccC----------------CCCCceeEEEEEEEEeeCC-ceEEEEeCCC
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKA----------------GSSGVTKTCEMQRTMLKDG-QVVNVIDTPG   78 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~-~~~~liDtPG   78 (225)
                      .....+|+++|+..+|||||..+|+-........                ...+.|.......+.| .+ ..++||||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~-~~~~~iNlIDTPG   85 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW-KGDYRINLIDTPG   85 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEE-cCceEEEEeCCCC
Confidence            4567899999999999999998887554322211                1246788888888999 64 9999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158           79 LFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN  153 (225)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~  153 (225)
                      +.|+.       -++.+    ...-.|++++|+|+...........++...+.     ..|.++++||+|.+..+
T Consensus        86 HVDFt-------~EV~r----slrvlDgavvVvdaveGV~~QTEtv~rqa~~~-----~vp~i~fiNKmDR~~a~  144 (697)
T COG0480          86 HVDFT-------IEVER----SLRVLDGAVVVVDAVEGVEPQTETVWRQADKY-----GVPRILFVNKMDRLGAD  144 (697)
T ss_pred             ccccH-------HHHHH----HHHhhcceEEEEECCCCeeecHHHHHHHHhhc-----CCCeEEEEECccccccC
Confidence            99983       22222    23344999999999888888887888777664     37999999999988664

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=2.8e-11  Score=99.91  Aligned_cols=159  Identities=21%  Similarity=0.288  Sum_probs=119.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCcc-ccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158           21 NLVLVGRTGNGKSATANSILGKRA-FKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (225)
                      .|+..|+...|||||+.+++|... ........+.|.+..++.... ++..+.++|.||+.++          +..++ .
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~-~d~~~~fIDvpgh~~~----------i~~mi-a   69 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKL-EDGVMGFIDVPGHPDF----------ISNLL-A   69 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccC-CCCceEEeeCCCcHHH----------HHHHH-h
Confidence            588899999999999999998753 223345678999999999988 5669999999998743          23332 3


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc
Q 036158          100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR  179 (225)
Q Consensus       100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (225)
                      .....|..++|+++++.+...+.+.+..+.. |+.   ++.++|+||+|.....  .+++.        .+++++.... 
T Consensus        70 g~~~~d~alLvV~~deGl~~qtgEhL~iLdl-lgi---~~giivltk~D~~d~~--r~e~~--------i~~Il~~l~l-  134 (447)
T COG3276          70 GLGGIDYALLVVAADEGLMAQTGEHLLILDL-LGI---KNGIIVLTKADRVDEA--RIEQK--------IKQILADLSL-  134 (447)
T ss_pred             hhcCCceEEEEEeCccCcchhhHHHHHHHHh-cCC---CceEEEEeccccccHH--HHHHH--------HHHHHhhccc-
Confidence            3457799999999988999888888877765 444   6889999999976553  34444        3445555442 


Q ss_pred             EEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          180 CVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       180 ~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                        .-.+....|+.+++++++|...|.++.
T Consensus       135 --~~~~i~~~s~~~g~GI~~Lk~~l~~L~  161 (447)
T COG3276         135 --ANAKIFKTSAKTGRGIEELKNELIDLL  161 (447)
T ss_pred             --ccccccccccccCCCHHHHHHHHHHhh
Confidence              223345677788999999999999998

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=1.7e-11  Score=96.22  Aligned_cols=178  Identities=18%  Similarity=0.224  Sum_probs=120.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCcc------------c--cccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCC
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRA------------F--KSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD   81 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~------------~--~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (225)
                      .+++.+|+.+|+.+.|||||..+|+..-.            .  .......+.|.......++. ..+++..+|+||+-|
T Consensus         9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet-~~rhyahVDcPGHaD   87 (394)
T COG0050           9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHAD   87 (394)
T ss_pred             CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEec-CCceEEeccCCChHH
Confidence            57889999999999999999988864321            0  01122457788877777787 889999999999865


Q ss_pred             CCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHh
Q 036158           82 SSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL  161 (225)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~  161 (225)
                      +      +.+.|..++     ..|..|+|+.+.+..-+..++.+...++. +-   +.+++++||+|...+. +.++...
T Consensus        88 Y------vKNMItgAa-----qmDgAILVVsA~dGpmPqTrEHiLlarqv-Gv---p~ivvflnK~Dmvdd~-ellelVe  151 (394)
T COG0050          88 Y------VKNMITGAA-----QMDGAILVVAATDGPMPQTREHILLARQV-GV---PYIVVFLNKVDMVDDE-ELLELVE  151 (394)
T ss_pred             H------HHHHhhhHH-----hcCccEEEEEcCCCCCCcchhhhhhhhhc-CC---cEEEEEEecccccCcH-HHHHHHH
Confidence            4      222222222     45999999998777777777766555543 22   5788899999988653 4556566


Q ss_pred             hhcCCchHHHHHHHcCCc--EEEe-eCCC----ccccccHHHHHHHHHHHHHHHHHcCCCC
Q 036158          162 GRECPKPLKEILQLCDNR--CVLF-DNKT----KDTAKRTEQVGKLLSLVNSVIVQNGGQP  215 (225)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~--~~~~-~~~~----~~~~~~~~~v~~l~~~i~~~~~~~~~~~  215 (225)
                      .+     ++++++.++..  -.++ ..+.    ...+.-...+.+|++.+.++++...+..
T Consensus       152 mE-----vreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~~  207 (394)
T COG0050         152 ME-----VRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERDI  207 (394)
T ss_pred             HH-----HHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCcc
Confidence            66     89999988764  1111 1110    1111234577899999998887766553

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.33  E-value=7.5e-11  Score=89.95  Aligned_cols=163  Identities=19%  Similarity=0.139  Sum_probs=99.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      ..+|+++|.+|+|||+|+..+++...... ..+...........+. .....+.|+||+|..++.           .+..
T Consensus         3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~-y~ptied~y~k~~~v~-~~~~~l~ilDt~g~~~~~-----------~~~~   69 (196)
T KOG0395|consen    3 EYKVVVLGAGGVGKSALTIQFLTGRFVED-YDPTIEDSYRKELTVD-GEVCMLEILDTAGQEEFS-----------AMRD   69 (196)
T ss_pred             ceEEEEECCCCCCcchheeeecccccccc-cCCCccccceEEEEEC-CEEEEEEEEcCCCcccCh-----------HHHH
Confidence            57899999999999999999887775333 2222223333333333 133478899999955442           2223


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEEG-AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      .+....|++++|++++++-+-++. .+.+.+.+..+. ...|+++|.||+|+........++         -+.+...++
T Consensus        70 ~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~-~~~PivlVGNK~Dl~~~R~V~~ee---------g~~la~~~~  139 (196)
T KOG0395|consen   70 LYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGR-DDVPIILVGNKCDLERERQVSEEE---------GKALARSWG  139 (196)
T ss_pred             HhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCCEEEEEEcccchhccccCHHH---------HHHHHHhcC
Confidence            455677999999999866554443 344455333222 346999999999976533112221         233444444


Q ss_pred             CcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      ..+  +    ..||+...++++++..+.+.+..
T Consensus       140 ~~f--~----E~Sak~~~~v~~~F~~L~r~~~~  166 (196)
T KOG0395|consen  140 CAF--I----ETSAKLNYNVDEVFYELVREIRL  166 (196)
T ss_pred             CcE--E----EeeccCCcCHHHHHHHHHHHHHh
Confidence            432  2    23444447888888888877665

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=99.32  E-value=5.8e-10  Score=87.05  Aligned_cols=129  Identities=16%  Similarity=0.049  Sum_probs=78.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCC-ccccccCCCCCceeEEEEEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGK-RAFKSKAGSSGVTKTCEMQRTMLK--DGQVVNVIDTPGLFDSSADSEFVSKE   92 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~-~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~   92 (225)
                      ..+...|+|+|++++|||+|+|.|++. ..+........+|+........++  .+..+.++||||+.+...........
T Consensus         4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~   83 (224)
T cd01851           4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR   83 (224)
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence            356688999999999999999999998 356665555667776665555442  35789999999999775433111112


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHH-----------hcccccccEEEEEecCCC
Q 036158           93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESL-----------FGKKISDYMIVVFTGGDE  149 (225)
Q Consensus        93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~~~~vv~~k~D~  149 (225)
                      +......   -++++||.++..  ....+...+..+.+.           .........+.|+..++.
T Consensus        84 ~~~l~~l---lss~~i~n~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ll~vvRD~~~  146 (224)
T cd01851          84 LFALATL---LSSVLIYNSWET--ILGDDLAALMGLLKTTLEVLGLAGLTEFEKPKPLLLFVVRDFSL  146 (224)
T ss_pred             HHHHHHH---HhCEEEEeccCc--ccHHHHHHHHHHHHHHHHhhhhhhhhhcccCCCceEEEEecCcC
Confidence            2221111   348888888764  233343343333321           111233456666666654

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.31  E-value=8.5e-11  Score=83.50  Aligned_cols=161  Identities=16%  Similarity=0.166  Sum_probs=93.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      -++++++|+.|+|||-|+..+.....-+..+...+.........+-. ...++.+|||.|.           +.++.-..
T Consensus         9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGg-K~vKLQIWDTAGQ-----------ErFRSVtR   76 (214)
T KOG0086|consen    9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGG-KTVKLQIWDTAGQ-----------ERFRSVTR   76 (214)
T ss_pred             hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecC-cEEEEEEeecccH-----------HHHHHHHH
Confidence            47899999999999999999886554222222222222222222211 2238999999994           45677777


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc-ccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFG-KKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      .+++++.+.++|.|++.+-+-.  .+-.|+..... ......++++.||.|+-+..+.+            +.+.-+.|.
T Consensus        77 sYYRGAAGAlLVYD~Tsrdsfn--aLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~Vt------------flEAs~Faq  142 (214)
T KOG0086|consen   77 SYYRGAAGALLVYDITSRDSFN--ALTNWLTDARTLASPNIVVILCGNKKDLDPEREVT------------FLEASRFAQ  142 (214)
T ss_pred             HHhccccceEEEEeccchhhHH--HHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhh------------HHHHHhhhc
Confidence            8999999999999998543222  23333332210 11124466667888876554222            222333333


Q ss_pred             CcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                      .+...|   ..+|+.++.++++.+-...+-+
T Consensus       143 Enel~f---lETSa~TGeNVEEaFl~c~~tI  170 (214)
T KOG0086|consen  143 ENELMF---LETSALTGENVEEAFLKCARTI  170 (214)
T ss_pred             ccceee---eeecccccccHHHHHHHHHHHH
Confidence            322222   2345567788888776655433

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.30  E-value=1.1e-10  Score=81.79  Aligned_cols=160  Identities=14%  Similarity=0.153  Sum_probs=101.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .++.+|+.+|-.++||||++..|.-...     .....|.......+.+ .+..+++||..|.+           .++..
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~-----~~~ipTvGFnvetVty-kN~kfNvwdvGGqd-----------~iRpl   77 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQS-----VTTIPTVGFNVETVTY-KNVKFNVWDVGGQD-----------KIRPL   77 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCC-----cccccccceeEEEEEe-eeeEEeeeeccCch-----------hhhHH
Confidence            4579999999999999999988764332     1233455666667777 78899999999954           56777


Q ss_pred             HhhcCCCccEEEEEEeCCCC--CCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC-cccHHHHhhhcCCchHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNR--FSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN-DETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~-~~~~~~~~~~~~~~~~~~~~  173 (225)
                      +..++.+..++|||+|..++  +++.-.++...+.+.  +--..+++|..||-|+.... +..+.++++-         -
T Consensus        78 WrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~--em~~~~~LvlANkQDlp~A~~pqei~d~leL---------e  146 (180)
T KOG0071|consen   78 WRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDR--EMRDAIILILANKQDLPDAMKPQEIQDKLEL---------E  146 (180)
T ss_pred             HHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCH--hhhcceEEEEecCcccccccCHHHHHHHhcc---------c
Confidence            88899999999999987543  222222233333221  11235788889999976554 2233333322         1


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                      ..-+.++++-..    ++..+.++.+-+.++.+..
T Consensus       147 ~~r~~~W~vqp~----~a~~gdgL~eglswlsnn~  177 (180)
T KOG0071|consen  147 RIRDRNWYVQPS----CALSGDGLKEGLSWLSNNL  177 (180)
T ss_pred             cccCCccEeecc----ccccchhHHHHHHHHHhhc
Confidence            122344554433    3444577777666665543

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.30  E-value=1.6e-11  Score=87.64  Aligned_cols=167  Identities=13%  Similarity=0.109  Sum_probs=101.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .-.++|+++|.-=+|||||+=...........-.............++- ..-.+.||||.|...+           -..
T Consensus        11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed-~ra~L~IWDTAGQErf-----------HAL   78 (218)
T KOG0088|consen   11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVED-CRADLHIWDTAGQERF-----------HAL   78 (218)
T ss_pred             ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhccccccc-ceeeeeeeeccchHhh-----------hcc
Confidence            4458999999999999999976664442111000000011111111211 2236899999996532           111


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      --.++++.+++++|+|++++-+-. -+.+...++..+|..  ..++||.||+|+-+....+..+         .....+.
T Consensus        79 GPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGne--i~l~IVGNKiDLEeeR~Vt~qe---------Ae~YAes  147 (218)
T KOG0088|consen   79 GPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNE--IELLIVGNKIDLEEERQVTRQE---------AEAYAES  147 (218)
T ss_pred             CceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCe--eEEEEecCcccHHHhhhhhHHH---------HHHHHHh
Confidence            124678899999999998553322 244566677777764  6789999999975543222222         3344455


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                      .|..|+      .+||+...+|.+|++.+-+.+.+..
T Consensus       148 vGA~y~------eTSAk~N~Gi~elFe~Lt~~MiE~~  178 (218)
T KOG0088|consen  148 VGALYM------ETSAKDNVGISELFESLTAKMIEHS  178 (218)
T ss_pred             hchhhe------ecccccccCHHHHHHHHHHHHHHHh
Confidence            555443      4566677999999998887666543

>PRK12740 elongation factor G; Reviewed

Probab=99.29  E-value=4.4e-11  Score=107.51  Aligned_cols=111  Identities=21%  Similarity=0.260  Sum_probs=77.3

Q ss_pred             EcCCCCCHHHHHHHHhCCcccccc----------------CCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHH
Q 036158           25 VGRTGNGKSATANSILGKRAFKSK----------------AGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEF   88 (225)
Q Consensus        25 ~G~~g~GKSSlin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~   88 (225)
                      +|+.|+|||||+++|+........                ....+.|.......+.+ .+..+++|||||..++      
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-~~~~i~liDtPG~~~~------   73 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW-KGHKINLIDTPGHVDF------   73 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE-CCEEEEEEECCCcHHH------
Confidence            599999999999999654322110                01245666677777888 7889999999998642      


Q ss_pred             HHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158           89 VSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED  152 (225)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~  152 (225)
                       ...+.    .....+|++++|+|+...........+..+...     ..|+++|+||+|....
T Consensus        74 -~~~~~----~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~-----~~p~iiv~NK~D~~~~  127 (668)
T PRK12740         74 -TGEVE----RALRVLDGAVVVVCAVGGVEPQTETVWRQAEKY-----GVPRIIFVNKMDRAGA  127 (668)
T ss_pred             -HHHHH----HHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHc-----CCCEEEEEECCCCCCC
Confidence             11222    233466999999999866666666666555442     3789999999997654

>PRK13768 GTPase; Provisional

Probab=99.29  E-value=4.1e-11  Score=95.18  Aligned_cols=134  Identities=16%  Similarity=0.130  Sum_probs=77.4

Q ss_pred             eEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCC
Q 036158           70 VVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDE  149 (225)
Q Consensus        70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~  149 (225)
                      .+.++||||..+.... ...+..+.+.+....  .+++++|+|+....+..+.....++..........|+++|+||+|.
T Consensus        98 ~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~--~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~  174 (253)
T PRK13768         98 DYVLVDTPGQMELFAF-RESGRKLVERLSGSS--KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADL  174 (253)
T ss_pred             CEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcC--CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhh
Confidence            6999999997654321 333444555544332  7999999999755555555544444322111234899999999998


Q ss_pred             CCCCcccHHHHhhhcC-------------------CchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          150 LEDNDETLEDYLGREC-------------------PKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       150 ~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      ....  ..+.......                   +..+.+.++..+..+..    .+.|+.++.++++|++.|.+.+..
T Consensus       175 ~~~~--~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~v----i~iSa~~~~gl~~L~~~I~~~l~~  248 (253)
T PRK13768        175 LSEE--ELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRV----IPVSAKTGEGFDELYAAIQEVFCG  248 (253)
T ss_pred             cCch--hHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcE----EEEECCCCcCHHHHHHHHHHHcCC
Confidence            8664  3332222100                   11122234444432211    233445668999999999888765


Q ss_pred             cC
Q 036158          211 NG  212 (225)
Q Consensus       211 ~~  212 (225)
                      ++
T Consensus       249 ~~  250 (253)
T PRK13768        249 GE  250 (253)
T ss_pred             CC
Confidence            43

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.27  E-value=1.9e-11  Score=85.65  Aligned_cols=123  Identities=16%  Similarity=0.180  Sum_probs=85.9

Q ss_pred             CCCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHH
Q 036158           13 TSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKE   92 (225)
Q Consensus        13 ~~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~   92 (225)
                      +++....++|+++|--++||||++..|.+.++.+..+     |.......++..+..++++||..|.           +.
T Consensus        11 ks~t~rEirilllGldnAGKTT~LKqL~sED~~hltp-----T~GFn~k~v~~~g~f~LnvwDiGGq-----------r~   74 (185)
T KOG0074|consen   11 KSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTP-----TNGFNTKKVEYDGTFHLNVWDIGGQ-----------RG   74 (185)
T ss_pred             cCCCcceEEEEEEecCCCcchhHHHHHccCChhhccc-----cCCcceEEEeecCcEEEEEEecCCc-----------cc
Confidence            4666888999999999999999999999988754422     3333334455535579999999994           35


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCC-CCHH-HHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158           93 IVKCIGMTKDGIHAVLVVFSVRNR-FSEE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDN  153 (225)
Q Consensus        93 ~~~~~~~~~~~~~~ii~v~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~  153 (225)
                      ++.+|+.++.++|.+|||+|..+. ...+ ..++.+.+.+.  +-...|+++.-||-|.+...
T Consensus        75 IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleee--Kl~~vpvlIfankQdlltaa  135 (185)
T KOG0074|consen   75 IRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEE--KLAEVPVLIFANKQDLLTAA  135 (185)
T ss_pred             cchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhh--hhhccceeehhhhhHHHhhc
Confidence            677888899999999999997532 2211 12222222221  01347889999999977654

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.26  E-value=8.6e-11  Score=106.32  Aligned_cols=119  Identities=16%  Similarity=0.248  Sum_probs=78.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccC--------------CCCCceeEEEEEEEEe--e-CCceEEEEeCCCC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKA--------------GSSGVTKTCEMQRTML--K-DGQVVNVIDTPGL   79 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~--------------~~~~~t~~~~~~~~~~--~-~~~~~~liDtPG~   79 (225)
                      ....+|+++|+.++|||||+.+|+.........              ...+.|.......+.|  . .+..++|+||||+
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~   97 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH   97 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence            456789999999999999999997543211100              0122343333333332  1 3567999999999


Q ss_pred             CCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158           80 FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELE  151 (225)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~  151 (225)
                      .++.       ..+.    .....+|++|+|+|+.......+...++...+.     ..|+++++||+|...
T Consensus        98 ~df~-------~~~~----~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~-----~~~~iv~iNK~D~~~  153 (731)
T PRK07560         98 VDFG-------GDVT----RAMRAVDGAIVVVDAVEGVMPQTETVLRQALRE-----RVKPVLFINKVDRLI  153 (731)
T ss_pred             cChH-------HHHH----HHHHhcCEEEEEEECCCCCCccHHHHHHHHHHc-----CCCeEEEEECchhhc
Confidence            8752       2222    333456999999999877777777777665442     257799999999763

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.26  E-value=4.4e-11  Score=95.08  Aligned_cols=163  Identities=18%  Similarity=0.200  Sum_probs=107.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .+.+.|+|+|-||+||||||++|++....+.  ..-..|.++..+...+|.+..+.+.||-||..-  -...+...+...
T Consensus       176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~--drLFATLDpT~h~a~Lpsg~~vlltDTvGFisd--LP~~LvaAF~AT  251 (410)
T KOG0410|consen  176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPN--DRLFATLDPTLHSAHLPSGNFVLLTDTVGFISD--LPIQLVAAFQAT  251 (410)
T ss_pred             CCCceEEEEeecCccHHHHHHHHHhhhcCcc--chhheeccchhhhccCCCCcEEEEeechhhhhh--CcHHHHHHHHHH
Confidence            3458899999999999999999996665322  345678888888889999999999999999732  223344444433


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhcc-c--ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGA-AIHILESLFGK-K--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI  172 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~-~~~~l~~~~~~-~--~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (225)
                      +.. .-.+|+++.|.|++++.-..+++ .+..+.++ +- +  ....++=|-||.|.-++.   .++   +         
T Consensus       252 Lee-VaeadlllHvvDiShP~ae~q~e~Vl~vL~~i-gv~~~pkl~~mieVdnkiD~e~~~---~e~---E---------  314 (410)
T KOG0410|consen  252 LEE-VAEADLLLHVVDISHPNAEEQRETVLHVLNQI-GVPSEPKLQNMIEVDNKIDYEEDE---VEE---E---------  314 (410)
T ss_pred             HHH-HhhcceEEEEeecCCccHHHHHHHHHHHHHhc-CCCcHHHHhHHHhhcccccccccc---Ccc---c---------
Confidence            322 22569999999998776555544 44444443 32 1  123466677787755442   110   0         


Q ss_pred             HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          173 LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                                =++....|+.++.++++++..+...+..
T Consensus       315 ----------~n~~v~isaltgdgl~el~~a~~~kv~~  342 (410)
T KOG0410|consen  315 ----------KNLDVGISALTGDGLEELLKAEETKVAS  342 (410)
T ss_pred             ----------cCCccccccccCccHHHHHHHHHHHhhh
Confidence                      0123455667788999999888766654

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=1.7e-10  Score=98.09  Aligned_cols=144  Identities=21%  Similarity=0.264  Sum_probs=102.2

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhCCcccc-----------------------------ccCCCCCceeEEEEEEEE
Q 036158           14 SPSNGERNLVLVGRTGNGKSATANSILGKRAFK-----------------------------SKAGSSGVTKTCEMQRTM   64 (225)
Q Consensus        14 ~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~~   64 (225)
                      +....++.++++|+..+|||||...|+-.-...                             ......+.|.......++
T Consensus       172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe  251 (603)
T KOG0458|consen  172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE  251 (603)
T ss_pred             cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence            445688999999999999999998876321100                             112245778888888888


Q ss_pred             eeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhccccc
Q 036158           65 LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNR-------FSEEEGAAIHILESLFGKKIS  137 (225)
Q Consensus        65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~  137 (225)
                      . ....++|+|+||+.++.      -..+     .....+|+.+||+|+...       .....++.+..++. ++.   
T Consensus       252 s-~~~~~tliDaPGhkdFi------~nmi-----~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~-Lgi---  315 (603)
T KOG0458|consen  252 S-KSKIVTLIDAPGHKDFI------PNMI-----SGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRS-LGI---  315 (603)
T ss_pred             c-CceeEEEecCCCccccc------hhhh-----ccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHH-cCc---
Confidence            6 77899999999988773      1112     234467999999998632       12223555555554 443   


Q ss_pred             ccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH-HHcCC
Q 036158          138 DYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL-QLCDN  178 (225)
Q Consensus       138 ~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  178 (225)
                      ..++|++||+|.+.=++..+++....     +...+ +.||+
T Consensus       316 ~qlivaiNKmD~V~Wsq~RF~eIk~~-----l~~fL~~~~gf  352 (603)
T KOG0458|consen  316 SQLIVAINKMDLVSWSQDRFEEIKNK-----LSSFLKESCGF  352 (603)
T ss_pred             ceEEEEeecccccCccHHHHHHHHHH-----HHHHHHHhcCc
Confidence            68999999999998877788888777     77777 77775

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.25  E-value=9.7e-11  Score=94.16  Aligned_cols=143  Identities=15%  Similarity=0.186  Sum_probs=104.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCcccc-----------c--------------------cCCCCCceeEEEEEEEE
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFK-----------S--------------------KAGSSGVTKTCEMQRTM   64 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~-----------~--------------------~~~~~~~t~~~~~~~~~   64 (225)
                      ....+|++-+|+..-||||||-.|+......           +                    .....+.|.+..+.-+.
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs   82 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS   82 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence            3566899999999999999998888554210           0                    00134789998887777


Q ss_pred             eeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEE
Q 036158           65 LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVF  144 (225)
Q Consensus        65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~  144 (225)
                      . ..+++.+.||||+.++       .+   +++ .-..-+|+.|+++|+...+-...+ .-..+..++|-   +++++++
T Consensus        83 T-~KRkFIiADTPGHeQY-------TR---NMa-TGASTadlAIlLVDAR~Gvl~QTr-RHs~I~sLLGI---rhvvvAV  146 (431)
T COG2895          83 T-EKRKFIIADTPGHEQY-------TR---NMA-TGASTADLAILLVDARKGVLEQTR-RHSFIASLLGI---RHVVVAV  146 (431)
T ss_pred             c-ccceEEEecCCcHHHH-------hh---hhh-cccccccEEEEEEecchhhHHHhH-HHHHHHHHhCC---cEEEEEE
Confidence            7 8899999999998643       22   222 233466999999999866655443 34455555665   7999999


Q ss_pred             ecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc
Q 036158          145 TGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR  179 (225)
Q Consensus       145 ~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (225)
                      ||+|+...+++.+++...+     ...+.+..+..
T Consensus       147 NKmDLvdy~e~~F~~I~~d-----y~~fa~~L~~~  176 (431)
T COG2895         147 NKMDLVDYSEEVFEAIVAD-----YLAFAAQLGLK  176 (431)
T ss_pred             eeecccccCHHHHHHHHHH-----HHHHHHHcCCC
Confidence            9999998887788888777     77777777763

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.25  E-value=3.4e-11  Score=100.07  Aligned_cols=170  Identities=21%  Similarity=0.244  Sum_probs=113.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccc-------------cCCCCCceeEEEEEEEEee----CCceEEEEeCCC
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKS-------------KAGSSGVTKTCEMQRTMLK----DGQVVNVIDTPG   78 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~-------------~~~~~~~t~~~~~~~~~~~----~~~~~~liDtPG   78 (225)
                      .....++.++.+-..|||||..+|+.....-.             .....+.|...+.....+.    +...++||||||
T Consensus         6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG   85 (603)
T COG0481           6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG   85 (603)
T ss_pred             hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence            35567899999999999999988875432110             1124567777666665553    224799999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHH
Q 036158           79 LFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLE  158 (225)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~  158 (225)
                      +.|+..       ++++.+..|    .+.++|+|+..+....+....   ...+..  ..-++.|+||+|+...   ..+
T Consensus        86 HVDFsY-------EVSRSLAAC----EGalLvVDAsQGveAQTlAN~---YlAle~--~LeIiPViNKIDLP~A---dpe  146 (603)
T COG0481          86 HVDFSY-------EVSRSLAAC----EGALLVVDASQGVEAQTLANV---YLALEN--NLEIIPVLNKIDLPAA---DPE  146 (603)
T ss_pred             ccceEE-------EehhhHhhC----CCcEEEEECccchHHHHHHHH---HHHHHc--CcEEEEeeecccCCCC---CHH
Confidence            999852       233333334    899999999877655543322   222222  2578999999997665   555


Q ss_pred             HHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCC
Q 036158          159 DYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQP  215 (225)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~  215 (225)
                      ...++     +.+++   |..   -......||+++.+++++++.|.+-++...+.+
T Consensus       147 rvk~e-----Ie~~i---Gid---~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~  192 (603)
T COG0481         147 RVKQE-----IEDII---GID---ASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGDP  192 (603)
T ss_pred             HHHHH-----HHHHh---CCC---cchheeEecccCCCHHHHHHHHHhhCCCCCCCC
Confidence            65555     55555   221   122345688899999999999999888876653

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.24  E-value=4.1e-11  Score=86.91  Aligned_cols=171  Identities=13%  Similarity=0.078  Sum_probs=108.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccc---cCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKS---KAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEI   93 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (225)
                      +....|+++|.-++|||||+.++-.......   .+....+|.......+.+ .+.++.+||.-|.           +.+
T Consensus        15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v-~~~~l~fwdlgGQ-----------e~l   82 (197)
T KOG0076|consen   15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV-CNAPLSFWDLGGQ-----------ESL   82 (197)
T ss_pred             hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee-ccceeEEEEcCCh-----------HHH
Confidence            4567899999999999999977653321111   112334566666677777 6889999999993           455


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCC-CCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNR-FSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI  172 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (225)
                      ++.+..++..+|++|+|+|+.++ .-++....++.+... ..-...|+++..||-|.-...  ...+...-     +. .
T Consensus        83 rSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~-E~leg~p~L~lankqd~q~~~--~~~El~~~-----~~-~  153 (197)
T KOG0076|consen   83 RSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVEN-EKLEGAPVLVLANKQDLQNAM--EAAELDGV-----FG-L  153 (197)
T ss_pred             HHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHH-HHhcCCchhhhcchhhhhhhh--hHHHHHHH-----hh-h
Confidence            66667777888999999999742 112222233322221 011247999999999965443  33332111     22 1


Q ss_pred             HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          173 LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      .+.-+.+-+.|   .+.|+-.+.++++-.+++..-+..+
T Consensus       154 ~e~~~~rd~~~---~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  154 AELIPRRDNPF---QPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhhcCCccCcc---ccchhhhcccHHHHHHHHHHHHhhc
Confidence            33334444444   4557778899999999998877776

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.23  E-value=2.7e-10  Score=96.71  Aligned_cols=173  Identities=18%  Similarity=0.181  Sum_probs=113.0

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158           14 SPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEI   93 (225)
Q Consensus        14 ~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (225)
                      ....+.+.++|+|++|+||||||.+|...-.-.......++      ..+.-...+.++++.+|.  |        ..++
T Consensus        64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GP------iTvvsgK~RRiTflEcp~--D--------l~~m  127 (1077)
T COG5192          64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGP------ITVVSGKTRRITFLECPS--D--------LHQM  127 (1077)
T ss_pred             ccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCc------eEEeecceeEEEEEeChH--H--------HHHH
Confidence            33456677889999999999999999864321111111111      111222566899999994  1        2233


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                      ....+    -+|.+++++|+.-++..++++++..+... |   -+.++.|+|+.|+.+.. .++.....+..+.+|.++.
T Consensus       128 iDvaK----IaDLVlLlIdgnfGfEMETmEFLnil~~H-G---mPrvlgV~ThlDlfk~~-stLr~~KKrlkhRfWtEiy  198 (1077)
T COG5192         128 IDVAK----IADLVLLLIDGNFGFEMETMEFLNILISH-G---MPRVLGVVTHLDLFKNP-STLRSIKKRLKHRFWTEIY  198 (1077)
T ss_pred             HhHHH----hhheeEEEeccccCceehHHHHHHHHhhc-C---CCceEEEEeecccccCh-HHHHHHHHHHhhhHHHHHc
Confidence            33322    45999999999888888888888888763 2   26799999999988654 5777777777778888887


Q ss_pred             HHcCCcEEE--eeCCCccccccHHHHHHHHHHHHHH----HHHcCCCCC
Q 036158          174 QLCDNRCVL--FDNKTKDTAKRTEQVGKLLSLVNSV----IVQNGGQPY  216 (225)
Q Consensus       174 ~~~~~~~~~--~~~~~~~~~~~~~~v~~l~~~i~~~----~~~~~~~~~  216 (225)
                      +.....|+.  .+.++++     ..+-.|..+|.-|    +..++.+||
T Consensus       199 qGaKlFylsgV~nGRYpD-----reilnLsRfisVMKfRPl~Wrn~HPy  242 (1077)
T COG5192         199 QGAKLFYLSGVENGRYPD-----REILNLSRFISVMKFRPLEWRNMHPY  242 (1077)
T ss_pred             CCceEEEecccccCCCCC-----HHHHHHHHHHhhhcccccccccCCce
Confidence            654444432  3345554     5666666666543    345556665

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.23  E-value=7.8e-11  Score=102.34  Aligned_cols=175  Identities=17%  Similarity=0.180  Sum_probs=111.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEe-----------------eCCceEEEEeCCCCCC
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTML-----------------KDGQVVNVIDTPGLFD   81 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-----------------~~~~~~~liDtPG~~~   81 (225)
                      .+.+.++|+..+|||-|+..|.+.++-...  ..+.|.......+..                 ..-..+.+|||||+..
T Consensus       475 SPIcCilGHVDTGKTKlld~ir~tNVqege--aggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs  552 (1064)
T KOG1144|consen  475 SPICCILGHVDTGKTKLLDKIRGTNVQEGE--AGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES  552 (1064)
T ss_pred             CceEEEeecccccchHHHHHhhcccccccc--ccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence            467999999999999999999988763332  223333322211111                 0223589999999765


Q ss_pred             CCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCc----ccH
Q 036158           82 SSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDND----ETL  157 (225)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~----~~~  157 (225)
                      +        ..++.   .-...+|.+|+|+|+.+++.+...+.+..|+..     ..|++|++||+|.+.+-.    ..+
T Consensus       553 F--------tnlRs---rgsslC~~aIlvvdImhGlepqtiESi~lLR~r-----ktpFivALNKiDRLYgwk~~p~~~i  616 (1064)
T KOG1144|consen  553 F--------TNLRS---RGSSLCDLAILVVDIMHGLEPQTIESINLLRMR-----KTPFIVALNKIDRLYGWKSCPNAPI  616 (1064)
T ss_pred             h--------hhhhh---ccccccceEEEEeehhccCCcchhHHHHHHHhc-----CCCeEEeehhhhhhcccccCCCchH
Confidence            4        22222   233355999999999999999888888888775     379999999999873220    111


Q ss_pred             HHHh-------hhcCCchHHHHHHHc---CCc-EEEee--------CCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          158 EDYL-------GRECPKPLKEILQLC---DNR-CVLFD--------NKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       158 ~~~~-------~~~~~~~~~~~~~~~---~~~-~~~~~--------~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      .+.+       .+.++..+..++-.+   |.+ -++|.        +..++||.++.+|.+|+-+|.++.+..
T Consensus       617 ~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~  689 (1064)
T KOG1144|consen  617 VEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKT  689 (1064)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHH
Confidence            1111       111222244443222   222 11232        346889999999999999998887764

>cd01858 NGP_1 NGP-1

Probab=99.22  E-value=3.6e-11  Score=88.80  Aligned_cols=57  Identities=25%  Similarity=0.342  Sum_probs=43.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL   79 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (225)
                      ...+|+++|.+|+|||||+|+|.+.....++. .+++|+......    -+..+.|+||||+
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~-~~g~T~~~~~~~----~~~~~~liDtPGi  157 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAP-IPGETKVWQYIT----LMKRIYLIDCPGV  157 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCC-CCCeeEeEEEEE----cCCCEEEEECcCC
Confidence            45789999999999999999999987655533 556666655433    2345899999995

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.22  E-value=3.7e-10  Score=92.42  Aligned_cols=111  Identities=13%  Similarity=0.089  Sum_probs=63.6

Q ss_pred             CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHH-HHHHhcccccccEEEEEec
Q 036158           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHI-LESLFGKKISDYMIVVFTG  146 (225)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~vv~~k  146 (225)
                      +..++|+||+|..+..   ..    +       ...+|.+++|++..   +.++.+.++. +.+       ..-++|+||
T Consensus       148 g~d~viieT~Gv~qs~---~~----i-------~~~aD~vlvv~~p~---~gd~iq~~k~gi~E-------~aDIiVVNK  203 (332)
T PRK09435        148 GYDVILVETVGVGQSE---TA----V-------AGMVDFFLLLQLPG---AGDELQGIKKGIME-------LADLIVINK  203 (332)
T ss_pred             CCCEEEEECCCCccch---hH----H-------HHhCCEEEEEecCC---chHHHHHHHhhhhh-------hhheEEeeh
Confidence            4679999999988432   11    1       12469999997532   2233333322 333       233899999


Q ss_pred             CCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEe-eCCCccccccHHHHHHHHHHHHHHHH
Q 036158          147 GDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLF-DNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       147 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      +|+.+..  .......+     +++.+.....+...+ .+....|+.++.++++|++.|.++.+
T Consensus       204 aDl~~~~--~a~~~~~e-----l~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        204 ADGDNKT--AARRAAAE-----YRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             hcccchh--HHHHHHHH-----HHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            9987653  33333333     444443322110001 12234556677999999999998876

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.20  E-value=1.1e-09  Score=87.96  Aligned_cols=174  Identities=18%  Similarity=0.252  Sum_probs=104.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCc---ccccc--CCCCCceeEEEEEEEEeeCC--------ceEEEEeCCCCCCCC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKR---AFKSK--AGSSGVTKTCEMQRTMLKDG--------QVVNVIDTPGLFDSS   83 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~---~~~~~--~~~~~~t~~~~~~~~~~~~~--------~~~~liDtPG~~~~~   83 (225)
                      ...++++++|+..+|||||.++|....   .++..  +...+.|.+........+..        ..+.++|+||+.   
T Consensus         5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa---   81 (522)
T KOG0461|consen    5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA---   81 (522)
T ss_pred             CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH---
Confidence            455999999999999999999986432   22211  12334455544444333222        256999999974   


Q ss_pred             CCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC--cccHHHHh
Q 036158           84 ADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN--DETLEDYL  161 (225)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~--~~~~~~~~  161 (225)
                              .+.+.+.....-.|..++|+|+..+......+.+-. .+.+    .+..+||+||+|.++..  ...++...
T Consensus        82 --------sLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLii-g~~~----c~klvvvinkid~lpE~qr~ski~k~~  148 (522)
T KOG0461|consen   82 --------SLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLII-GELL----CKKLVVVINKIDVLPENQRASKIEKSA  148 (522)
T ss_pred             --------HHHHHHHhhhheeeeeeEEEehhcccccccchhhhh-hhhh----ccceEEEEeccccccchhhhhHHHHHH
Confidence                    344444455667799999999976554444444432 2222    26789999999987653  12334333


Q ss_pred             hhcCCchHHHHHHHcCC----cEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158          162 GRECPKPLKEILQLCDN----RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG  213 (225)
Q Consensus       162 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~  213 (225)
                      ..     ++.-++..+.    +.+.+...  ........+.+|.+.+.+-.-+..+
T Consensus       149 kk-----~~KtLe~t~f~g~~PI~~vsa~--~G~~~~~~i~eL~e~l~s~if~P~R  197 (522)
T KOG0461|consen  149 KK-----VRKTLESTGFDGNSPIVEVSAA--DGYFKEEMIQELKEALESRIFEPKR  197 (522)
T ss_pred             HH-----HHHHHHhcCcCCCCceeEEecC--CCccchhHHHHHHHHHHHhhcCCCc
Confidence            33     6666666543    33333322  2223347888998888766544433

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=99.18  E-value=6.9e-11  Score=88.37  Aligned_cols=57  Identities=32%  Similarity=0.456  Sum_probs=45.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL   79 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (225)
                      ...+++++|.+|+|||||+|+|++.....++ ..+++|+..+...  +  +..+.|+||||+
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~-~~pg~T~~~~~~~--~--~~~~~l~DtPGi  172 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRSRACNVG-ATPGVTKSMQEVH--L--DKKVKLLDSPGI  172 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCcccceec-CCCCeEcceEEEE--e--CCCEEEEECcCC
Confidence            3479999999999999999999998876664 3567777655443  2  356899999995

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.18  E-value=2.1e-10  Score=97.49  Aligned_cols=174  Identities=15%  Similarity=0.205  Sum_probs=106.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCC-CCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGS-SGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ....+||+|+|..|+||||||-+|+.....+..+.. +..+..    .-..|+..+.+++||+.-.+.   ...+.+   
T Consensus         6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP----advtPe~vpt~ivD~ss~~~~---~~~l~~---   75 (625)
T KOG1707|consen    6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP----ADVTPENVPTSIVDTSSDSDD---RLCLRK---   75 (625)
T ss_pred             CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC----CccCcCcCceEEEecccccch---hHHHHH---
Confidence            466799999999999999999999988754332221 112221    112235667999999853221   122222   


Q ss_pred             HHHhhcCCCccEEEEEEeCCCC--CCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNR--FSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI  172 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (225)
                           ..+++|++++|...++.  ++.-...++-.+++.++.....|+++|.||.|.......+.+..        +..+
T Consensus        76 -----EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~--------~~pi  142 (625)
T KOG1707|consen   76 -----EIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVN--------TLPI  142 (625)
T ss_pred             -----HHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHH--------HHHH
Confidence                 23456999999977643  33334556777777777777899999999999887753322321        1222


Q ss_pred             HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCC
Q 036158          173 LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPY  216 (225)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~  216 (225)
                      +...    .-+.++..+||.+-.++.+++-..++-+.-.-++.|
T Consensus       143 m~~f----~EiEtciecSA~~~~n~~e~fYyaqKaVihPt~PLy  182 (625)
T KOG1707|consen  143 MIAF----AEIETCIECSALTLANVSELFYYAQKAVIHPTSPLY  182 (625)
T ss_pred             HHHh----HHHHHHHhhhhhhhhhhHhhhhhhhheeeccCcccc
Confidence            2221    114455666777777777777666555444433333

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.16  E-value=3.2e-10  Score=85.17  Aligned_cols=120  Identities=13%  Similarity=0.201  Sum_probs=73.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      ...|+++|.++||||+|+-.|......     ..-+..+.....+.+ +.....|+|.||+...       ...+.....
T Consensus        38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~-----~TvtSiepn~a~~r~-gs~~~~LVD~PGH~rl-------R~kl~e~~~  104 (238)
T KOG0090|consen   38 QNAVLLVGLSDSGKTSLFTQLITGSHR-----GTVTSIEPNEATYRL-GSENVTLVDLPGHSRL-------RRKLLEYLK  104 (238)
T ss_pred             CCcEEEEecCCCCceeeeeehhcCCcc-----CeeeeeccceeeEee-cCcceEEEeCCCcHHH-------HHHHHHHcc
Confidence            368999999999999999877754321     122233334444455 5556899999998622       122222222


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc----cccccEEEEEecCCCCCCC
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK----KISDYMIVVFTGGDELEDN  153 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~vv~~k~D~~~~~  153 (225)
                      .. ..+-+++||+|.- .+...-+...+.+...+-.    ....|++++.||-|+....
T Consensus       105 ~~-~~akaiVFVVDSa-~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAk  161 (238)
T KOG0090|consen  105 HN-YSAKAIVFVVDSA-TFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAK  161 (238)
T ss_pred             cc-ccceeEEEEEecc-ccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcC
Confidence            11 2778999999985 3333333333333333222    2347899999999988664

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.15  E-value=5.2e-10  Score=103.06  Aligned_cols=103  Identities=17%  Similarity=0.142  Sum_probs=74.2

Q ss_pred             CHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC-----------------ceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158           31 GKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG-----------------QVVNVIDTPGLFDSSADSEFVSKEI   93 (225)
Q Consensus        31 GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~liDtPG~~~~~~~~~~~~~~~   93 (225)
                      +||||+.+|.+.++...  ...+.|.+...+.+.++..                 ..+.||||||+..+           
T Consensus       473 ~KTtLLD~iR~t~v~~~--EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F-----------  539 (1049)
T PRK14845        473 HNTTLLDKIRKTRVAKK--EAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAF-----------  539 (1049)
T ss_pred             ccccHHHHHhCCCcccc--cCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHH-----------
Confidence            49999999999987433  3566777777766655211                 13899999996533           


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELE  151 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~  151 (225)
                      ..........+|++++|+|+++.+...+.+.+..+...     ..|+++|+||+|+.+
T Consensus       540 ~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~-----~iPiIVViNKiDL~~  592 (1049)
T PRK14845        540 TSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQY-----KTPFVVAANKIDLIP  592 (1049)
T ss_pred             HHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHc-----CCCEEEEEECCCCcc
Confidence            11122344578999999999877777777777766653     379999999999864

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.15  E-value=9.7e-10  Score=90.77  Aligned_cols=119  Identities=15%  Similarity=0.179  Sum_probs=86.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccC--------------------CCCCceeEEEEEEEEeeCCceEEEEeC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKA--------------------GSSGVTKTCEMQRTMLKDGQVVNVIDT   76 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~--------------------~~~~~t~~~~~~~~~~~~~~~~~liDt   76 (225)
                      ....+.+++-++.+|||||...|+=.-......                    ...+.....-.-.+++ .+..++|+||
T Consensus        10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y-~~~~iNLLDT   88 (528)
T COG4108          10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDY-ADCLVNLLDT   88 (528)
T ss_pred             hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEecc-CCeEEeccCC
Confidence            456789999999999999997765221111100                    0234455555566777 8999999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158           77 PGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED  152 (225)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~  152 (225)
                      ||+.|+..+...+..           .+|..++|+|+-.++.+.+..+++..+-.     ..|++-.+||+|...-
T Consensus        89 PGHeDFSEDTYRtLt-----------AvDsAvMVIDaAKGiE~qT~KLfeVcrlR-----~iPI~TFiNKlDR~~r  148 (528)
T COG4108          89 PGHEDFSEDTYRTLT-----------AVDSAVMVIDAAKGIEPQTLKLFEVCRLR-----DIPIFTFINKLDREGR  148 (528)
T ss_pred             CCccccchhHHHHHH-----------hhheeeEEEecccCccHHHHHHHHHHhhc-----CCceEEEeeccccccC
Confidence            999998643332222           45999999999889998888888877654     3799999999996544

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.14  E-value=8.1e-10  Score=89.46  Aligned_cols=139  Identities=17%  Similarity=0.283  Sum_probs=84.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEE---------------------------------
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRT---------------------------------   63 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~---------------------------------   63 (225)
                      ...+-|+++|..++||||+||.|+..+.. .....+..|++......                                 
T Consensus        56 d~KPmill~GqyStGKTtfi~yLle~dyp-g~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln  134 (532)
T KOG1954|consen   56 DAKPMILLVGQYSTGKTTFIRYLLEQDYP-GLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN  134 (532)
T ss_pred             ccCceEEEEeccccchhHHHHHHHhCCCC-ccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence            45678999999999999999999987743 22222222322222110                                 


Q ss_pred             -----EeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhccc
Q 036158           64 -----MLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRN-RFSEEEGAAIHILESLFGKK  135 (225)
Q Consensus        64 -----~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~-~~~~~~~~~~~~l~~~~~~~  135 (225)
                           .+++.  .+++++||||+-+...+.-...-.+...+.....++|.||+++|+-. .++.+..+.+..++-   .+
T Consensus       135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG---~E  211 (532)
T KOG1954|consen  135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG---HE  211 (532)
T ss_pred             HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC---Cc
Confidence                 00000  26999999999866433211111222333344567899999999851 345555666665544   32


Q ss_pred             ccccEEEEEecCCCCCCCcccHHHHhhh
Q 036158          136 ISDYMIVVFTGGDELEDNDETLEDYLGR  163 (225)
Q Consensus       136 ~~~~~~vv~~k~D~~~~~~~~~~~~~~~  163 (225)
                        ..+-||+||+|..+..  .+-+.+..
T Consensus       212 --dkiRVVLNKADqVdtq--qLmRVyGA  235 (532)
T KOG1954|consen  212 --DKIRVVLNKADQVDTQ--QLMRVYGA  235 (532)
T ss_pred             --ceeEEEeccccccCHH--HHHHHHHH
Confidence              5788999999987663  44444443

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.13  E-value=4.8e-10  Score=89.18  Aligned_cols=175  Identities=17%  Similarity=0.211  Sum_probs=102.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcc-ccccCCCCCceeEEEEEE-------------------------EEeeCCce
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRA-FKSKAGSSGVTKTCEMQR-------------------------TMLKDGQV   70 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~-~~~~~~~~~~t~~~~~~~-------------------------~~~~~~~~   70 (225)
                      -+..+|+.+|+...|||||..+|.|.-. ..+.....+.|....+..                         .+..--+.
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            3568999999999999999999997532 111111111111111100                         00001247


Q ss_pred             EEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCH-HHHHHHHHHHHHhcccccccEEEEEecCCC
Q 036158           71 VNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSE-EEGAAIHILESLFGKKISDYMIVVFTGGDE  149 (225)
Q Consensus        71 ~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~  149 (225)
                      +.|+|.||+.          .-+..+++. .--.|+.+||+.++.++-+ .+++.+-.| +..+-   ++++++=||+|+
T Consensus        88 VSfVDaPGHe----------~LMATMLsG-AAlMDgAlLvIaANEpcPQPQT~EHl~Al-eIigi---k~iiIvQNKIDl  152 (415)
T COG5257          88 VSFVDAPGHE----------TLMATMLSG-AALMDGALLVIAANEPCPQPQTREHLMAL-EIIGI---KNIIIVQNKIDL  152 (415)
T ss_pred             EEEeeCCchH----------HHHHHHhcc-hhhhcceEEEEecCCCCCCCchHHHHHHH-hhhcc---ceEEEEecccce
Confidence            9999999964          112222222 2244999999988754322 233333222 23333   899999999998


Q ss_pred             CCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCC
Q 036158          150 LEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPY  216 (225)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~  216 (225)
                      ...+ ...+.|. +     +++.++..   +---....+.||.++.+++.|+++|.+.++...+.+.
T Consensus       153 V~~E-~AlE~y~-q-----Ik~FvkGt---~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~  209 (415)
T COG5257         153 VSRE-RALENYE-Q-----IKEFVKGT---VAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLD  209 (415)
T ss_pred             ecHH-HHHHHHH-H-----HHHHhccc---ccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCC
Confidence            7543 3334332 2     34444322   2112235567888899999999999999988766653

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.12  E-value=2.5e-10  Score=87.94  Aligned_cols=111  Identities=18%  Similarity=0.320  Sum_probs=80.6

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ....-+|+++|.+.+|||||+..|+....  ....+..+|..|-.....+ ++-++.++|.||+.+.+.+.....++.. 
T Consensus        59 KsGdaRValIGfPSVGKStlLs~iT~T~S--eaA~yeFTTLtcIpGvi~y-~ga~IQllDLPGIieGAsqgkGRGRQvi-  134 (364)
T KOG1486|consen   59 KSGDARVALIGFPSVGKSTLLSKITSTHS--EAASYEFTTLTCIPGVIHY-NGANIQLLDLPGIIEGASQGKGRGRQVI-  134 (364)
T ss_pred             ccCCeEEEEecCCCccHHHHHHHhhcchh--hhhceeeeEEEeecceEEe-cCceEEEecCcccccccccCCCCCceEE-
Confidence            33458999999999999999999997764  2234667788888888888 8999999999999987665544333322 


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK  135 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~  135 (225)
                         ....-+|.+++|+|+..  ++..++.++.-.+..|-+
T Consensus       135 ---avArtaDlilMvLDatk--~e~qr~~le~ELe~vGiR  169 (364)
T KOG1486|consen  135 ---AVARTADLILMVLDATK--SEDQREILEKELEAVGIR  169 (364)
T ss_pred             ---EEeecccEEEEEecCCc--chhHHHHHHHHHHHhcee
Confidence               34456799999999973  344555665544444443

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.09  E-value=4.9e-10  Score=87.49  Aligned_cols=155  Identities=18%  Similarity=0.212  Sum_probs=93.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeC---CceEEEEeCCCCCCCCCCcHHHHHHHH-
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKD---GQVVNVIDTPGLFDSSADSEFVSKEIV-   94 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~liDtPG~~~~~~~~~~~~~~~~-   94 (225)
                      .++|+-+|.||.|||||+..|++...-.......-.+........++..   ...++++||.|++|-....+. .+.+. 
T Consensus        42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~S-yk~iVd  120 (406)
T KOG3859|consen   42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDS-YKPIVD  120 (406)
T ss_pred             eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccc-cchHHH
Confidence            6899999999999999999999877422211121122222222333312   237999999999975432211 11111 


Q ss_pred             -----------------HHHh-hcCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcc
Q 036158           95 -----------------KCIG-MTKDGIHAVLVVFSVR-NRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDE  155 (225)
Q Consensus        95 -----------------~~~~-~~~~~~~~ii~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~  155 (225)
                                       +.+. -...++|+.+|.+..+ +.+...+.-.++.+.+.      .+++.|+.|+|.....  
T Consensus       121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ldsk------VNIIPvIAKaDtisK~--  192 (406)
T KOG3859|consen  121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDSK------VNIIPVIAKADTISKE--  192 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhhh------hhhHHHHHHhhhhhHH--
Confidence                             1111 2345789999998664 55666665566555553      7889999999976543  


Q ss_pred             cHHHHhhhcCCchHHHHHHHcCCcEEEeeCCC
Q 036158          156 TLEDYLGRECPKPLKEILQLCDNRCVLFDNKT  187 (225)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (225)
                      .+..+...     +..-+..-|.+++.|....
T Consensus       193 eL~~FK~k-----imsEL~sngv~IYqfPtDd  219 (406)
T KOG3859|consen  193 ELKRFKIK-----IMSELVSNGVQIYQFPTDD  219 (406)
T ss_pred             HHHHHHHH-----HHHHHHhcCceeeeccchH
Confidence            45554433     3334445566777776543

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=99.09  E-value=7.9e-10  Score=89.53  Aligned_cols=67  Identities=27%  Similarity=0.413  Sum_probs=51.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEF   88 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~   88 (225)
                      ...++++++|.+|+||||++|+|.+.....+. ..+++|+..+..  .+  +..+.|+||||+........+
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~--~~--~~~~~l~DtPGi~~~~~~~~~  185 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTG-NRPGVTKAQQWI--KL--GKGLELLDTPGILWPKLEDQE  185 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccccC-CCCCeEEEEEEE--Ee--CCcEEEEECCCcCCCCCCcHH
Confidence            35689999999999999999999998865553 356777776543  33  456899999999876544443

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=99.08  E-value=8.1e-11  Score=86.22  Aligned_cols=60  Identities=28%  Similarity=0.352  Sum_probs=36.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccC------CCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCC
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKA------GSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS   83 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~   83 (225)
                      ..++++|++|+|||||||+|++.....+..      ....+|+....+.+    .....||||||+.+..
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l----~~g~~iIDTPGf~~~~  101 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPL----PDGGYIIDTPGFRSFG  101 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEE----TTSEEEECSHHHHT--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEec----CCCcEEEECCCCCccc
Confidence            789999999999999999999885433211      12234455544443    2246899999998664

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.08  E-value=3.8e-10  Score=81.83  Aligned_cols=62  Identities=29%  Similarity=0.472  Sum_probs=44.6

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCC
Q 036158           14 SPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF   80 (225)
Q Consensus        14 ~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~   80 (225)
                      |......+++++|.+|+|||||+|+|++...... ....+.|+....  +.+  +..+.|+||||+.
T Consensus        78 Sa~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~~~~~~~--~~~--~~~~~i~DtpG~~  139 (141)
T cd01857          78 SALKENATIGLVGYPNVGKSSLINALVGKKKVSV-SATPGKTKHFQT--IFL--TPTITLCDCPGLV  139 (141)
T ss_pred             EecCCCcEEEEECCCCCCHHHHHHHHhCCCceee-CCCCCcccceEE--EEe--CCCEEEEECCCcC
Confidence            4444445899999999999999999998875433 334555555443  444  2368999999985

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01855 YqeH YqeH

Probab=99.06  E-value=2.9e-10  Score=86.61  Aligned_cols=57  Identities=30%  Similarity=0.353  Sum_probs=41.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcccc-------ccCCCCCceeEEEEEEEEeeCCceEEEEeCCCC
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFK-------SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL   79 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~-------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (225)
                      ..+++++|.+|+|||||+|+|++.....       ..+..+++|+.......    +..+.|+||||+
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~----~~~~~~~DtPG~  190 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL----GNGKKLYDTPGI  190 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec----CCCCEEEeCcCC
Confidence            4689999999999999999999865321       22344566776655443    225899999996

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.06  E-value=1.6e-10  Score=84.32  Aligned_cols=122  Identities=20%  Similarity=0.154  Sum_probs=77.8

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCC-CCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAG-SSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ....++++++|.-++||||+|.+....- |..... ..++........+.. ++..+.+|||.|..+           +.
T Consensus        17 ~e~aiK~vivGng~VGKssmiqryCkgi-fTkdykktIgvdflerqi~v~~-Edvr~mlWdtagqeE-----------fD   83 (246)
T KOG4252|consen   17 YERAIKFVIVGNGSVGKSSMIQRYCKGI-FTKDYKKTIGVDFLERQIKVLI-EDVRSMLWDTAGQEE-----------FD   83 (246)
T ss_pred             hhhhEEEEEECCCccchHHHHHHHhccc-cccccccccchhhhhHHHHhhH-HHHHHHHHHhccchh-----------HH
Confidence            4556899999999999999999987322 211111 111111001111111 344678999999653           34


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDN  153 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~  153 (225)
                      ...+.+++++.+.++|++-.++.+-+. .++.+.++.-.   ...|+++|-||+|+++++
T Consensus        84 aItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~---~~IPtV~vqNKIDlveds  140 (246)
T KOG4252|consen   84 AITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKET---ERIPTVFVQNKIDLVEDS  140 (246)
T ss_pred             HHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHh---ccCCeEEeeccchhhHhh
Confidence            445568889999999999876655433 23334444433   348999999999999876

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=99.04  E-value=6.9e-10  Score=81.76  Aligned_cols=58  Identities=26%  Similarity=0.446  Sum_probs=44.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL   79 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (225)
                      ....+++++|.+|+||||++|+|++......+ ..+++|+......  +  +..+.|+||||+
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~-~~~~~t~~~~~~~--~--~~~~~liDtPG~  155 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVG-NVPGTTTSQQEVK--L--DNKIKLLDTPGI  155 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHcccccccc-CCCCcccceEEEE--e--cCCEEEEECCCC
Confidence            45688999999999999999999997755443 3456666655433  2  356999999996

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=2.1e-09  Score=86.24  Aligned_cols=178  Identities=18%  Similarity=0.205  Sum_probs=120.3

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCcc------c--------cccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCC
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRA------F--------KSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD   81 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~------~--------~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (225)
                      .+++.+|+-+|+...|||||.-+|+.--.      +        .......+.|.......++. ..+++.=+|+||+-|
T Consensus        51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeT-a~RhYaH~DCPGHAD  129 (449)
T KOG0460|consen   51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYET-AKRHYAHTDCPGHAD  129 (449)
T ss_pred             CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeec-cccccccCCCCchHH
Confidence            57899999999999999999988863211      0        01122456777776666666 678899999999875


Q ss_pred             CCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHh
Q 036158           82 SSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL  161 (225)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~  161 (225)
                      +          +.+++..+ ...|+.|+|+.+.+..-+..++.+...++. |-   ++++|.+||.|...+. +.++-..
T Consensus       130 Y----------IKNMItGa-aqMDGaILVVaatDG~MPQTrEHlLLArQV-GV---~~ivvfiNKvD~V~d~-e~leLVE  193 (449)
T KOG0460|consen  130 Y----------IKNMITGA-AQMDGAILVVAATDGPMPQTREHLLLARQV-GV---KHIVVFINKVDLVDDP-EMLELVE  193 (449)
T ss_pred             H----------HHHhhcCc-cccCceEEEEEcCCCCCcchHHHHHHHHHc-CC---ceEEEEEecccccCCH-HHHHHHH
Confidence            4          33333332 256999999999877777787777666653 33   7899999999988553 4555555


Q ss_pred             hhcCCchHHHHHHHcCCc---EEEeeCCC------ccccccHHHHHHHHHHHHHHHHHcCCCC
Q 036158          162 GRECPKPLKEILQLCDNR---CVLFDNKT------KDTAKRTEQVGKLLSLVNSVIVQNGGQP  215 (225)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~---~~~~~~~~------~~~~~~~~~v~~l~~~i~~~~~~~~~~~  215 (225)
                      .+     +++++..++..   ...+..+.      .........|.+|++.++.+++...+..
T Consensus       194 mE-----~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~  251 (449)
T KOG0460|consen  194 ME-----IRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDL  251 (449)
T ss_pred             HH-----HHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCccccc
Confidence            55     88999887642   22222111      1122234568889999988776655443

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.03  E-value=1.3e-09  Score=81.94  Aligned_cols=166  Identities=19%  Similarity=0.136  Sum_probs=99.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ..+++|||..++|||+|+-+.... .++...  ..+..+.....+...++.  .+.||||.|..+..        .++  
T Consensus         4 ~~K~VvVGDga~GKT~ll~~~t~~-~fp~~y--vPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYD--------rlR--   70 (198)
T KOG0393|consen    4 RIKCVVVGDGAVGKTCLLISYTTN-AFPEEY--VPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYD--------RLR--   70 (198)
T ss_pred             eeEEEEECCCCcCceEEEEEeccC-cCcccc--cCeEEccceEEEEecCCCEEEEeeeecCCCcccc--------ccc--
Confidence            478999999999999999777754 333322  222223333444552133  68999999988763        122  


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHH--HHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhh----cCCchHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEE--EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR----ECPKPLK  170 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~----~~~~~~~  170 (225)
                       -..++.+|+|++++++.++.+-+  ...++-.++++++.   .|+++|.+|.|+..+. ...+.....    -.....+
T Consensus        71 -plsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~---vpiiLVGtk~DLr~d~-~~~~~l~~~~~~~Vt~~~g~  145 (198)
T KOG0393|consen   71 -PLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPN---VPIILVGTKADLRDDP-STLEKLQRQGLEPVTYEQGL  145 (198)
T ss_pred             -ccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCC---CCEEEEeehHHhhhCH-HHHHHHHhccCCcccHHHHH
Confidence             24788999999999987554444  24456666665543   8999999999988432 222222111    1112234


Q ss_pred             HHHHHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          171 EILQLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       171 ~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                      ++....|. .|+      ..|+.+..++.+.++......
T Consensus       146 ~lA~~iga~~y~------EcSa~tq~~v~~vF~~a~~~~  178 (198)
T KOG0393|consen  146 ELAKEIGAVKYL------ECSALTQKGVKEVFDEAIRAA  178 (198)
T ss_pred             HHHHHhCcceee------eehhhhhCCcHHHHHHHHHHH
Confidence            55555553 222      334445566666665544433

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=99.02  E-value=2.1e-09  Score=86.54  Aligned_cols=66  Identities=29%  Similarity=0.405  Sum_probs=48.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSE   87 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~   87 (225)
                      ....+++++|.+|+|||||+|+|.+.....+. ..+++|+..+..  .+  +..+.|+||||+........
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~--~~--~~~~~l~DtPG~~~~~~~~~  181 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVG-NRPGVTKGQQWI--KL--SDGLELLDTPGILWPKFEDQ  181 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeecceEEE--Ee--CCCEEEEECCCcccCCCCch
Confidence            34688999999999999999999988765553 456777766543  33  34689999999965543333

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.01  E-value=8.1e-09  Score=73.60  Aligned_cols=124  Identities=16%  Similarity=0.154  Sum_probs=77.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEI   93 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~   93 (225)
                      ..+..+|+|+|.-++|||+++..|+-........ ...+-.+.....++.+.+-  .+.|+||.|+.+..   .++.+  
T Consensus         6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e-~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~---~eLpr--   79 (198)
T KOG3883|consen    6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTE-LHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQ---QELPR--   79 (198)
T ss_pred             hCcceEEEEECCccccHHHHHHHHHhccCCCCCc-cccchhhheeEeeecCCChhheEEEeecccccCch---hhhhH--
Confidence            3556899999999999999998887544321111 1122223333444442332  79999999998651   22222  


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHh---cccccccEEEEEecCCCCCCC
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLF---GKKISDYMIVVFTGGDELEDN  153 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~vv~~k~D~~~~~  153 (225)
                           -+.+-+|++++|.+..+.   +..+.++.|++..   ...-..|++|+.|+.|..++.
T Consensus        80 -----hy~q~aDafVLVYs~~d~---eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~  134 (198)
T KOG3883|consen   80 -----HYFQFADAFVLVYSPMDP---ESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPR  134 (198)
T ss_pred             -----hHhccCceEEEEecCCCH---HHHHHHHHHHHHHhhccccccccEEEEechhhcccch
Confidence                 244567999999988743   3333444444433   223446999999999987664

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.00  E-value=2.5e-09  Score=76.63  Aligned_cols=167  Identities=13%  Similarity=0.072  Sum_probs=90.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEe----eCC------ceEEEEeCCCCCCCCCCcHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTML----KDG------QVVNVIDTPGLFDSSADSEFV   89 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~------~~~~liDtPG~~~~~~~~~~~   89 (225)
                      ++.+.+|.+|+||||++...+........-...+  .+.....+.+    |++      .++.||||.|...        
T Consensus        10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVG--IDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQER--------   79 (219)
T KOG0081|consen   10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVG--IDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQER--------   79 (219)
T ss_pred             HHHHhhccCCCCceEEEEEecCCcccceeEEEee--cccccceEEEeccCCCCCCcceEEEEeeeccccHHH--------
Confidence            4677889999999999988775543111000001  1111111111    111      1789999999543        


Q ss_pred             HHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCch
Q 036158           90 SKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKP  168 (225)
Q Consensus        90 ~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~  168 (225)
                         ++...-...+.+=++++++|.+...+-.. +.++..++... -...+-+++..||+|+....  .+.       ...
T Consensus        80 ---FRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hA-YcE~PDivlcGNK~DL~~~R--~Vs-------~~q  146 (219)
T KOG0081|consen   80 ---FRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHA-YCENPDIVLCGNKADLEDQR--VVS-------EDQ  146 (219)
T ss_pred             ---HHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhh-ccCCCCEEEEcCccchhhhh--hhh-------HHH
Confidence               33333334456678999999974322222 23333333221 11235678889999975442  111       122


Q ss_pred             HHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          169 LKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ..++..+.+.+|+--+..  ++..-...++-|++.+++-++.+
T Consensus       147 a~~La~kyglPYfETSA~--tg~Nv~kave~LldlvM~Rie~~  187 (219)
T KOG0081|consen  147 AAALADKYGLPYFETSAC--TGTNVEKAVELLLDLVMKRIEQC  187 (219)
T ss_pred             HHHHHHHhCCCeeeeccc--cCcCHHHHHHHHHHHHHHHHHHH
Confidence            567888888877643333  23223356666666666555443

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.00  E-value=1.6e-09  Score=75.32  Aligned_cols=163  Identities=11%  Similarity=0.050  Sum_probs=100.5

Q ss_pred             EEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCC
Q 036158           24 LVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKD  102 (225)
Q Consensus        24 v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~  102 (225)
                      ++|.+++|||-|+-.+...... .+.--.....+..-..+... ...++.+|||.|..           .++.-...+++
T Consensus         2 llgds~~gktcllir~kdgafl-~~~fistvgid~rnkli~~~~~kvklqiwdtagqe-----------rfrsvt~ayyr   69 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFL-AGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQE-----------RFRSVTHAYYR   69 (192)
T ss_pred             ccccCccCceEEEEEeccCcee-cCceeeeeeeccccceeccCCcEEEEEEeeccchH-----------HHhhhhHhhhc
Confidence            6899999999988544322211 11000011111111222221 22378999999954           45555667888


Q ss_pred             CccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEE
Q 036158          103 GIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCV  181 (225)
Q Consensus       103 ~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (225)
                      .+|+++++.|+..+.+-+. +.++..+.++-.+.  ..++++.||+|.....      .+.   ...-..+.+..+.+++
T Consensus        70 da~allllydiankasfdn~~~wlsei~ey~k~~--v~l~llgnk~d~a~er------~v~---~ddg~kla~~y~ipfm  138 (192)
T KOG0083|consen   70 DADALLLLYDIANKASFDNCQAWLSEIHEYAKEA--VALMLLGNKCDLAHER------AVK---RDDGEKLAEAYGIPFM  138 (192)
T ss_pred             ccceeeeeeecccchhHHHHHHHHHHHHHHHHhh--HhHhhhccccccchhh------ccc---cchHHHHHHHHCCCce
Confidence            9999999999975555444 44666777765443  6788999999975432      111   1223556667776543


Q ss_pred             EeeCCCccccccHHHHHHHHHHHHHHHHHcCCCC
Q 036158          182 LFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQP  215 (225)
Q Consensus       182 ~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~  215 (225)
                            .+|++++.+++-.+-.|.+-+.+.+-.+
T Consensus       139 ------etsaktg~nvd~af~~ia~~l~k~~~~~  166 (192)
T KOG0083|consen  139 ------ETSAKTGFNVDLAFLAIAEELKKLKMGA  166 (192)
T ss_pred             ------eccccccccHhHHHHHHHHHHHHhccCC
Confidence                  5677888999988888877776665444

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=98.99  E-value=8.4e-09  Score=80.59  Aligned_cols=134  Identities=16%  Similarity=0.176  Sum_probs=70.5

Q ss_pred             ceEEEEeCCCCCCCC--CCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEE
Q 036158           69 QVVNVIDTPGLFDSS--ADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEE--GAAIHILESLFGKKISDYMIVVF  144 (225)
Q Consensus        69 ~~~~liDtPG~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~vv~  144 (225)
                      ..++||||||..+..  .....+   |...+  +..-+-+++||+|....-....  ..++-...-++..  +.|+++|+
T Consensus       116 ~~~~liDTPGQIE~FtWSAsGsI---Ite~l--ass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilykt--klp~ivvf  188 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAFTWSASGSI---ITETL--ASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKT--KLPFIVVF  188 (366)
T ss_pred             cCEEEEcCCCceEEEEecCCccc---hHhhH--hhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhc--cCCeEEEE
Confidence            458999999987642  111111   11222  2235688999998752222211  1222222222222  37999999


Q ss_pred             ecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEE------------EeeC---CCccccccHHHHHHHHHHHHHHHH
Q 036158          145 TGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCV------------LFDN---KTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       145 ~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~---~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      ||+|.....  ...++...  -+.+++.+......|+            -|.+   ..-.|+.++.+.++++..+.+.+.
T Consensus       189 NK~Dv~d~~--fa~eWm~D--fE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vd  264 (366)
T KOG1532|consen  189 NKTDVSDSE--FALEWMTD--FEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVD  264 (366)
T ss_pred             ecccccccH--HHHHHHHH--HHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHH
Confidence            999987664  33333332  1112222221111000            0111   112456678999999999999998


Q ss_pred             HcCC
Q 036158          210 QNGG  213 (225)
Q Consensus       210 ~~~~  213 (225)
                      +...
T Consensus       265 Ey~~  268 (366)
T KOG1532|consen  265 EYEE  268 (366)
T ss_pred             HHHH
Confidence            7643

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=5.1e-10  Score=78.85  Aligned_cols=164  Identities=15%  Similarity=0.106  Sum_probs=105.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      +...+|.++|--|+||+|.+-.+--.++...     -+|.......+.+ .+.++.+||.-|..           .++-+
T Consensus        16 e~e~rililgldGaGkttIlyrlqvgevvtt-----kPtigfnve~v~y-KNLk~~vwdLggqt-----------SirPy   78 (182)
T KOG0072|consen   16 EREMRILILGLDGAGKTTILYRLQVGEVVTT-----KPTIGFNVETVPY-KNLKFQVWDLGGQT-----------SIRPY   78 (182)
T ss_pred             ccceEEEEeeccCCCeeEEEEEcccCccccc-----CCCCCcCcccccc-ccccceeeEccCcc-----------cccHH
Confidence            3678999999999999998866653333211     1233333444555 67789999999854           45666


Q ss_pred             HhhcCCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRN--RFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      |..++...+++|||+|..+  +++..-.++...+++--=  .+.-++++.||.|-....  ...+....   ..+.+   
T Consensus        79 WRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eL--q~a~llv~anKqD~~~~~--t~~E~~~~---L~l~~---  148 (182)
T KOG0072|consen   79 WRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEEL--QHAKLLVFANKQDYSGAL--TRSEVLKM---LGLQK---  148 (182)
T ss_pred             HHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhh--cCceEEEEeccccchhhh--hHHHHHHH---hChHH---
Confidence            7778889999999998853  455555556666654211  125678889999965543  33333222   00122   


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                       ...+..   .....||.++.++++.++++.+.++++
T Consensus       149 -Lk~r~~---~Iv~tSA~kg~Gld~~~DWL~~~l~~~  181 (182)
T KOG0072|consen  149 -LKDRIW---QIVKTSAVKGEGLDPAMDWLQRPLKSR  181 (182)
T ss_pred             -Hhhhee---EEEeeccccccCCcHHHHHHHHHHhcc
Confidence             222222   233556778899999999999888764

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.97  E-value=2.8e-08  Score=84.39  Aligned_cols=133  Identities=18%  Similarity=0.226  Sum_probs=89.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCC---------------------------------------------
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGS---------------------------------------------   51 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~---------------------------------------------   51 (225)
                      ..-++|+|+|.-.+||||.+.++.....|+.+++.                                             
T Consensus       306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~  385 (980)
T KOG0447|consen  306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIEL  385 (980)
T ss_pred             ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHH
Confidence            44689999999999999999999877766554331                                             


Q ss_pred             -------CCceeEEEEEEEEe--eCCceEEEEeCCCCCCCCC--CcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHH
Q 036158           52 -------SGVTKTCEMQRTML--KDGQVVNVIDTPGLFDSSA--DSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEE  120 (225)
Q Consensus        52 -------~~~t~~~~~~~~~~--~~~~~~~liDtPG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~  120 (225)
                             .+.|.........+  |+-..++|+|.||......  ...++...|.++.+.+..++++||+|+.-. ..+.+
T Consensus       386 RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG-SVDAE  464 (980)
T KOG0447|consen  386 RMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG-SVDAE  464 (980)
T ss_pred             HHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC-Ccchh
Confidence                   13344344443333  3334899999999986442  234455667777777889999999999754 34433


Q ss_pred             HHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158          121 EGAAIHILESLFGKKISDYMIVVFTGGDELED  152 (225)
Q Consensus       121 ~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~  152 (225)
                      -...-+.+.+.  ....+.+++|+||.|+.+.
T Consensus       465 RSnVTDLVsq~--DP~GrRTIfVLTKVDlAEk  494 (980)
T KOG0447|consen  465 RSIVTDLVSQM--DPHGRRTIFVLTKVDLAEK  494 (980)
T ss_pred             hhhHHHHHHhc--CCCCCeeEEEEeecchhhh
Confidence            33333444443  2245789999999998765

>PTZ00099 rab6; Provisional

Probab=98.96  E-value=4.5e-08  Score=73.60  Aligned_cols=116  Identities=18%  Similarity=0.077  Sum_probs=70.7

Q ss_pred             ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecC
Q 036158           69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGG  147 (225)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~  147 (225)
                      ..+.||||||...+           ...+..++..+|++|+|+|.+++.+-.. ..++..+....+  ...|+++|.||+
T Consensus        29 v~l~iwDt~G~e~~-----------~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~--~~~piilVgNK~   95 (176)
T PTZ00099         29 VRLQLWDTAGQERF-----------RSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG--KDVIIALVGNKT   95 (176)
T ss_pred             EEEEEEECCChHHh-----------hhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECc
Confidence            47899999996532           2333445678999999999975432222 123333333221  236889999999


Q ss_pred             CCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          148 DELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       148 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                      |+........++         ........+..+      ...||.++.+++++++.|.+.+.+..
T Consensus        96 DL~~~~~v~~~e---------~~~~~~~~~~~~------~e~SAk~g~nV~~lf~~l~~~l~~~~  145 (176)
T PTZ00099         96 DLGDLRKVTYEE---------GMQKAQEYNTMF------HETSAKAGHNIKVLFKKIAAKLPNLD  145 (176)
T ss_pred             ccccccCCCHHH---------HHHHHHHcCCEE------EEEECCCCCCHHHHHHHHHHHHHhcc
Confidence            975432111111         223333333322      24566778999999999998887754

>PRK12288 GTPase RsgA; Reviewed

Probab=98.96  E-value=2.6e-09  Score=88.33  Aligned_cols=59  Identities=25%  Similarity=0.374  Sum_probs=41.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccccccCCCC------CceeEEEEEEEEeeCCceEEEEeCCCCCCCC
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSS------GVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS   83 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~   83 (225)
                      .++|+|.+|+|||||||+|++.....++....      -+|+..+.+.+.  .+  ..|+||||+.++.
T Consensus       207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~--~~--~~liDTPGir~~~  271 (347)
T PRK12288        207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFP--HG--GDLIDSPGVREFG  271 (347)
T ss_pred             CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEec--CC--CEEEECCCCCccc
Confidence            58999999999999999999887554433221      245555555442  23  3599999998764

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.95  E-value=8.2e-09  Score=74.54  Aligned_cols=119  Identities=12%  Similarity=0.040  Sum_probs=77.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ++.-+++++|--|+|||||++.|-..+...-     .+|.++......+ .+..++.+|..|+.           +-++.
T Consensus        18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qh-----vPTlHPTSE~l~I-g~m~ftt~DLGGH~-----------qArr~   80 (193)
T KOG0077|consen   18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQH-----VPTLHPTSEELSI-GGMTFTTFDLGGHL-----------QARRV   80 (193)
T ss_pred             ccCceEEEEeecCCchhhHHHHHcccccccc-----CCCcCCChHHhee-cCceEEEEccccHH-----------HHHHH
Confidence            4456799999999999999999987664322     2233333334455 77889999999964           23445


Q ss_pred             HhhcCCCccEEEEEEeCCCC-CCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158           97 IGMTKDGIHAVLVVFSVRNR-FSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN  153 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~  153 (225)
                      +..+...+|++++.+|+-+. .-.+.+..++.+...- .-...|+++..||+|.....
T Consensus        81 wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e-~la~vp~lilgnKId~p~a~  137 (193)
T KOG0077|consen   81 WKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDE-SLATVPFLILGNKIDIPYAA  137 (193)
T ss_pred             HHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHH-HHhcCcceeecccccCCCcc
Confidence            55677788999999988421 2222233333332210 01237999999999976653

>cd01856 YlqF YlqF

Probab=98.95  E-value=3e-09  Score=79.67  Aligned_cols=58  Identities=29%  Similarity=0.425  Sum_probs=43.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL   79 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (225)
                      ...++++++|.+|+|||||+|+|++...... ...+++|...+....   . ..+.++||||+
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~---~-~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKI---S-PGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEe---c-CCEEEEECCCC
Confidence            3457899999999999999999998775433 334566666655443   2 56899999997

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.94  E-value=8.9e-09  Score=97.56  Aligned_cols=126  Identities=17%  Similarity=0.242  Sum_probs=81.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCcccccc------CCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCC----CcHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSK------AGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA----DSEFV   89 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~----~~~~~   89 (225)
                      +=.+|+|++|+||||+|+.- |....-..      ....+.|..|...     -....+++||+|.+-...    .+...
T Consensus       112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~ww-----f~~~avliDtaG~y~~~~~~~~~~~~~  185 (1169)
T TIGR03348       112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWW-----FTDEAVLIDTAGRYTTQDSDPEEDAAA  185 (1169)
T ss_pred             CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceE-----ecCCEEEEcCCCccccCCCcccccHHH
Confidence            55789999999999999665 33321110      1123445555543     234578999999764332    23345


Q ss_pred             HHHHHHHHhhc--CCCccEEEEEEeCCCCCC--HH--------HHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158           90 SKEIVKCIGMT--KDGIHAVLVVFSVRNRFS--EE--------EGAAIHILESLFGKKISDYMIVVFTGGDELEDN  153 (225)
Q Consensus        90 ~~~~~~~~~~~--~~~~~~ii~v~~~~~~~~--~~--------~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~  153 (225)
                      +..+...++..  ...+++||+++++.+-+.  ..        -+..+..+.+.++-+  .|++|++||+|.+.+.
T Consensus       186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~--~PVYvv~Tk~Dll~GF  259 (1169)
T TIGR03348       186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGAR--FPVYLVLTKADLLAGF  259 (1169)
T ss_pred             HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCC--CCEEEEEecchhhcCH
Confidence            66777766554  457899999999873332  22        134445555555554  8999999999998764

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.94  E-value=3.7e-09  Score=86.31  Aligned_cols=89  Identities=20%  Similarity=0.213  Sum_probs=69.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC-----------------ceEEEEeCCCCCCC
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG-----------------QVVNVIDTPGLFDS   82 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~liDtPG~~~~   82 (225)
                      ++++++|.||+|||||+|+++...+  ....+|.+|.++....+.++.-                 ..+.++|.+|+...
T Consensus         3 l~~GIVGlPNVGKSTlFnAlT~~~a--~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G   80 (372)
T COG0012           3 LKIGIVGLPNVGKSTLFNALTKAGA--EIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG   80 (372)
T ss_pred             ceeEEecCCCCcHHHHHHHHHcCCc--cccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence            6899999999999999999998773  3345777888877766554221                 15899999999988


Q ss_pred             CCCcHHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 036158           83 SADSEFVSKEIVKCIGMTKDGIHAVLVVFSVR  114 (225)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~  114 (225)
                      +...+.+..++...++.    +|+++.|++..
T Consensus        81 As~GeGLGNkFL~~IRe----vdaI~hVVr~f  108 (372)
T COG0012          81 ASKGEGLGNKFLDNIRE----VDAIIHVVRCF  108 (372)
T ss_pred             cccCCCcchHHHHhhhh----cCeEEEEEEec
Confidence            87778888888766544    49999999764

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.93  E-value=1.1e-07  Score=66.84  Aligned_cols=121  Identities=14%  Similarity=0.139  Sum_probs=74.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      -.++..++|..|+|||-|+..++....-..-+...+.........+.- ...++.+|||.|.           +.++...
T Consensus        10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsg-qkiklqiwdtagq-----------erfravt   77 (215)
T KOG0097|consen   10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSG-QKIKLQIWDTAGQ-----------ERFRAVT   77 (215)
T ss_pred             heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecC-cEEEEEEeecccH-----------HHHHHHH
Confidence            357889999999999999999886654222222233323333333332 3448999999994           4566666


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc-ccccccEEEEEecCCCCCC
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFG-KKISDYMIVVFTGGDELED  152 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~vv~~k~D~~~~  152 (225)
                      .++++++.+.++|.|+..+-+-..  +-.|+..... .....-++++.||+|+-..
T Consensus        78 rsyyrgaagalmvyditrrstynh--lsswl~dar~ltnpnt~i~lignkadle~q  131 (215)
T KOG0097|consen   78 RSYYRGAAGALMVYDITRRSTYNH--LSSWLTDARNLTNPNTVIFLIGNKADLESQ  131 (215)
T ss_pred             HHHhccccceeEEEEehhhhhhhh--HHHHHhhhhccCCCceEEEEecchhhhhhc
Confidence            788899999999999984433222  2233332210 0112346677899996543

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.93  E-value=2.2e-09  Score=88.09  Aligned_cols=63  Identities=27%  Similarity=0.421  Sum_probs=49.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA   84 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (225)
                      ....+++|+|-+|+||||+||+|.+.....++ ..++.|...+....    +..+.|+||||+.-...
T Consensus       130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s-~~PG~Tk~~q~i~~----~~~i~LlDtPGii~~~~  192 (322)
T COG1161         130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTS-NRPGTTKGIQWIKL----DDGIYLLDTPGIIPPKF  192 (322)
T ss_pred             ccceEEEEEcCCCCcHHHHHHHHhcccceeeC-CCCceecceEEEEc----CCCeEEecCCCcCCCCc
Confidence            34588999999999999999999999986554 35677777665554    44489999999985543

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.89  E-value=5.8e-09  Score=87.03  Aligned_cols=121  Identities=19%  Similarity=0.224  Sum_probs=65.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCcc----ccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRA----FKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~----~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      .+++++|.+|+|||||+|+|++...    ....+..+++|.......  +  +..+.|+||||+.....-...+..+-..
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~--~--~~~~~l~DtPG~~~~~~~~~~l~~~~l~  230 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIP--L--DDGHSLYDTPGIINSHQMAHYLDKKDLK  230 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEE--e--CCCCEEEECCCCCChhHhhhhcCHHHHh
Confidence            5899999999999999999998542    113344567776655433  3  3446899999998542111111111111


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDEL  150 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~  150 (225)
                      .+. .........+.++....+.......++.+..   .  ...+.+..++.+..
T Consensus       231 ~~~-~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~---~--~~~~~~~~~~~~~~  279 (360)
T TIGR03597       231 YIT-PKKEIKPKTYQLNPNQTLFLGGLARFDYLKG---E--KTSFTFYVSNELNI  279 (360)
T ss_pred             hcC-CCCccCceEEEeCCCCEEEEceEEEEEEecC---C--ceEEEEEccCCcee
Confidence            111 1234567777776653333323223332221   1  13455556655544

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>TIGR00092 GTP-binding protein YchF

Probab=98.89  E-value=8.5e-09  Score=85.20  Aligned_cols=89  Identities=16%  Similarity=0.102  Sum_probs=66.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc----------------eEEEEeCCCCCCCC
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ----------------VVNVIDTPGLFDSS   83 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~----------------~~~liDtPG~~~~~   83 (225)
                      ++++++|.+|+|||||+|+|++...... ..++.+|..+....+.+++.+                .+.++|.||+....
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~-a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA   81 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEA-ANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA   81 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCcccc-CCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence            6899999999999999999998875233 335777777777777764432                58999999998765


Q ss_pred             CCcHHHHHHHHHHHhhcCCCccEEEEEEeC
Q 036158           84 ADSEFVSKEIVKCIGMTKDGIHAVLVVFSV  113 (225)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~  113 (225)
                      .........+...+..+    |++++|++.
T Consensus        82 s~g~Glgn~fL~~ir~~----d~l~hVvr~  107 (368)
T TIGR00092        82 SKGEGLGNQFLANIREV----DIIQHVVRC  107 (368)
T ss_pred             hcccCcchHHHHHHHhC----CEEEEEEeC
Confidence            54444555666555444    999999987

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.88  E-value=3.1e-09  Score=87.89  Aligned_cols=60  Identities=27%  Similarity=0.356  Sum_probs=41.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccccccCCC------CCceeEEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSKAGS------SGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA   84 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (225)
                      .++|+|++|+|||||||+|++.....+....      .-+|+.....  .++++  ..|+||||+.....
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~--~l~~g--~~liDTPG~~~~~l  239 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELF--ELPNG--GLLADTPGFNQPDL  239 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEE--ECCCC--cEEEeCCCcccccc
Confidence            4899999999999999999987654332211      1245555444  33233  27999999987654

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.88  E-value=7.1e-09  Score=83.21  Aligned_cols=90  Identities=21%  Similarity=0.230  Sum_probs=72.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc----------------eEEEEeCCCCCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ----------------VVNVIDTPGLFD   81 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~----------------~~~liDtPG~~~   81 (225)
                      .+++++++|.+|+|||||+|+|+.....  ....+.+|.++....+..+..+                .+.++|..|+..
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~a~--~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk   96 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSKAG--AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK   96 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCCCC--ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence            5689999999999999999999988764  3457788888888777663332                699999999998


Q ss_pred             CCCCcHHHHHHHHHHHhhcCCCccEEEEEEeC
Q 036158           82 SSADSEFVSKEIVKCIGMTKDGIHAVLVVFSV  113 (225)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~  113 (225)
                      .+...+.+...+.+.++..    |+++-|+++
T Consensus        97 GAs~G~GLGN~FLs~iR~v----DaifhVVr~  124 (391)
T KOG1491|consen   97 GASAGEGLGNKFLSHIRHV----DAIFHVVRA  124 (391)
T ss_pred             CcccCcCchHHHHHhhhhc----cceeEEEEe
Confidence            8777778888877766554    888888765

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=98.86  E-value=1.6e-08  Score=77.09  Aligned_cols=128  Identities=19%  Similarity=0.262  Sum_probs=83.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      ..+|+++|.+|+||||+=..++..... ......+.|.+.....+.+-++.-+.+||+.|...+      +...+...-.
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a-~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~f------men~~~~q~d   76 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIA-RDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEF------MENYLSSQED   76 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhh-hhhhccCCcceeeehhhhhhhhheeehhccCCcHHH------HHHHHhhcch
Confidence            468999999999999998766643321 112355667777776666645568899999995421      1222222223


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHHHHHH-HHHHHhcccccccEEEEEecCCCCCCC
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEEGAAIH-ILESLFGKKISDYMIVVFTGGDELEDN  153 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~vv~~k~D~~~~~  153 (225)
                      .....++++++|+|+..+--..|..... -|+.++.......+.+.++|+|+..-.
T Consensus        77 ~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d  132 (295)
T KOG3886|consen   77 NIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQED  132 (295)
T ss_pred             hhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccc
Confidence            3456889999999997553334433333 334444444557899999999988664

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.86  E-value=9.8e-09  Score=81.99  Aligned_cols=60  Identities=28%  Similarity=0.317  Sum_probs=40.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCcccccc------CCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCC
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSK------AGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS   83 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~   83 (225)
                      ...+++|++|+|||||+|+|.+.....+.      ....-+|+....+.+.    ..-.|+||||+.++.
T Consensus       165 ~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~----~gG~iiDTPGf~~~~  230 (301)
T COG1162         165 KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLP----GGGWIIDTPGFRSLG  230 (301)
T ss_pred             CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcC----CCCEEEeCCCCCccC
Confidence            47889999999999999999975432221      1223355655555442    123589999998764

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.86  E-value=4.1e-08  Score=80.07  Aligned_cols=25  Identities=20%  Similarity=0.306  Sum_probs=21.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .....|+|+|++|+|||||++.+..
T Consensus        32 ~~~~~i~i~G~~G~GKttl~~~l~~   56 (300)
T TIGR00750        32 GNAHRVGITGTPGAGKSTLLEALGM   56 (300)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            4568899999999999999998764

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.85  E-value=6e-09  Score=82.42  Aligned_cols=59  Identities=25%  Similarity=0.291  Sum_probs=41.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCC------CCCceeEEEEEEEEeeCCceEEEEeCCCCCCCC
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAG------SSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS   83 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~   83 (225)
                      ..++++|.+|+|||||||+|++.....+...      ...+|+....+..   .+  ..|+||||+....
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l---~~--~~liDtPG~~~~~  185 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF---HG--GLIADTPGFNEFG  185 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc---CC--cEEEeCCCccccC
Confidence            4789999999999999999998754332211      2235666665554   22  3799999998654

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.84  E-value=1.5e-08  Score=77.30  Aligned_cols=95  Identities=17%  Similarity=0.083  Sum_probs=58.1

Q ss_pred             ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 036158           69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGD  148 (225)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D  148 (225)
                      ..++||||||....   +.....++.+.+...  .++-+++|+++...  .++...+....+.+     ..--+++||.|
T Consensus        84 ~D~vlIDT~Gr~~~---d~~~~~el~~~~~~~--~~~~~~LVlsa~~~--~~~~~~~~~~~~~~-----~~~~lIlTKlD  151 (196)
T PF00448_consen   84 YDLVLIDTAGRSPR---DEELLEELKKLLEAL--NPDEVHLVLSATMG--QEDLEQALAFYEAF-----GIDGLILTKLD  151 (196)
T ss_dssp             SSEEEEEE-SSSST---HHHHHHHHHHHHHHH--SSSEEEEEEEGGGG--GHHHHHHHHHHHHS-----STCEEEEESTT
T ss_pred             CCEEEEecCCcchh---hHHHHHHHHHHhhhc--CCccceEEEecccC--hHHHHHHHHHhhcc-----cCceEEEEeec
Confidence            46999999997632   444555565555444  67889999998633  33333343333332     35578899999


Q ss_pred             CCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCc
Q 036158          149 ELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTK  188 (225)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (225)
                      .....    -         .+-++....+.+..++.+-..
T Consensus       152 et~~~----G---------~~l~~~~~~~~Pi~~it~Gq~  178 (196)
T PF00448_consen  152 ETARL----G---------ALLSLAYESGLPISYITTGQR  178 (196)
T ss_dssp             SSSTT----H---------HHHHHHHHHTSEEEEEESSSS
T ss_pred             CCCCc----c---------cceeHHHHhCCCeEEEECCCC
Confidence            76542    1         134556667888777776443

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.84  E-value=3.4e-07  Score=77.38  Aligned_cols=123  Identities=15%  Similarity=0.179  Sum_probs=71.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHh------CCccccccCCCCC---------ce--eEEEEEEEEe--------------
Q 036158           17 NGERNLVLVGRTGNGKSATANSIL------GKRAFKSKAGSSG---------VT--KTCEMQRTML--------------   65 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~------~~~~~~~~~~~~~---------~t--~~~~~~~~~~--------------   65 (225)
                      .+...|+++|.+|+||||++..|.      |.++.-.......         ..  .....+....              
T Consensus        98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~  177 (429)
T TIGR01425        98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK  177 (429)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence            345789999999999999998875      3332211111100         00  0011111100              


Q ss_pred             --eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEE
Q 036158           66 --KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVV  143 (225)
Q Consensus        66 --~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv  143 (225)
                        ..+..++|+||||...   .......++......  ..++.++||+|+..+  .......+.+.+.     ..+.-+|
T Consensus       178 ~~~~~~DvViIDTaGr~~---~d~~lm~El~~i~~~--~~p~e~lLVlda~~G--q~a~~~a~~F~~~-----~~~~g~I  245 (429)
T TIGR01425       178 FKKENFDIIIVDTSGRHK---QEDSLFEEMLQVAEA--IQPDNIIFVMDGSIG--QAAEAQAKAFKDS-----VDVGSVI  245 (429)
T ss_pred             HHhCCCCEEEEECCCCCc---chHHHHHHHHHHhhh--cCCcEEEEEeccccC--hhHHHHHHHHHhc-----cCCcEEE
Confidence              0245799999999653   334555666655433  267899999998633  2233344444432     2577899


Q ss_pred             EecCCCCC
Q 036158          144 FTGGDELE  151 (225)
Q Consensus       144 ~~k~D~~~  151 (225)
                      +||.|...
T Consensus       246 lTKlD~~a  253 (429)
T TIGR01425       246 ITKLDGHA  253 (429)
T ss_pred             EECccCCC
Confidence            99999653

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.83  E-value=4.1e-09  Score=82.88  Aligned_cols=130  Identities=17%  Similarity=0.148  Sum_probs=54.6

Q ss_pred             eEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHH-HHHHh-cccccccEEEEEecC
Q 036158           70 VVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHI-LESLF-GKKISDYMIVVFTGG  147 (225)
Q Consensus        70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~-l~~~~-~~~~~~~~~vv~~k~  147 (225)
                      .+.|+||||..+...- ......+.+.+..  ...-++++++|+. ..+... ..+.. +.... .-+...|.+.|+||+
T Consensus        92 ~y~l~DtPGQiElf~~-~~~~~~i~~~L~~--~~~~~~v~LvD~~-~~~~~~-~f~s~~L~s~s~~~~~~lP~vnvlsK~  166 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTH-SDSGRKIVERLQK--NGRLVVVFLVDSS-FCSDPS-KFVSSLLLSLSIMLRLELPHVNVLSKI  166 (238)
T ss_dssp             SEEEEE--SSHHHHHH-SHHHHHHHHTSSS------EEEEEE-GG-G-SSHH-HHHHHHHHHHHHHHHHTSEEEEEE--G
T ss_pred             cEEEEeCCCCEEEEEe-chhHHHHHHHHhh--hcceEEEEEEecc-cccChh-hHHHHHHHHHHHHhhCCCCEEEeeecc
Confidence            6999999997643110 1112222222222  3445788888886 333211 22221 11110 012348999999999


Q ss_pred             CCCCCCcccHHHHhh-------------hcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          148 DELEDNDETLEDYLG-------------RECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       148 D~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                      |.........-++..             ....+.+.+++...+...    ...+-+++.+.++++|+..|.+..
T Consensus       167 Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~----~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  167 DLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVI----RFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             GGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS-------EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             CcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCc----eEEEEECCChHHHHHHHHHHHHHh
Confidence            988632111111111             111122333333333321    122334456688999999887764

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=98.82  E-value=5.4e-08  Score=84.26  Aligned_cols=118  Identities=21%  Similarity=0.237  Sum_probs=77.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCC---------------CCCceeEEEEEEEEee----CCceEEEEeCC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAG---------------SSGVTKTCEMQRTMLK----DGQVVNVIDTP   77 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~---------------~~~~t~~~~~~~~~~~----~~~~~~liDtP   77 (225)
                      .-..+|+++|+-.+|||+|+..|..+.-......               ..+.+.......+.+.    ....++++|||
T Consensus       126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP  205 (971)
T KOG0468|consen  126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP  205 (971)
T ss_pred             ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence            4467899999999999999999987653211000               1233333333333331    12368999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 036158           78 GLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDEL  150 (225)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~  150 (225)
                      |+.++.       .+...    ....+|++++|+|+-+++.-...++++..-+   .  ..|+.+|+||+|.+
T Consensus       206 GHVnF~-------DE~ta----~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq---~--~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  206 GHVNFS-------DETTA----SLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ---N--RLPIVVVINKVDRL  262 (971)
T ss_pred             Ccccch-------HHHHH----HhhhcceEEEEEEcccCceeeHHHHHHHHHh---c--cCcEEEEEehhHHH
Confidence            999773       22222    2335599999999977777766666654333   2  28999999999965

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.81  E-value=5.9e-09  Score=87.69  Aligned_cols=62  Identities=27%  Similarity=0.374  Sum_probs=50.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS   83 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~   83 (225)
                      ...++|++||-+|+||||+||+|.|.+...+ +..++.|.+.+.+.+    ...+.|.||||+.-..
T Consensus       312 ~~~vtVG~VGYPNVGKSSTINaLvG~KkVsV-S~TPGkTKHFQTi~l----s~~v~LCDCPGLVfPS  373 (562)
T KOG1424|consen  312 KDVVTVGFVGYPNVGKSSTINALVGRKKVSV-SSTPGKTKHFQTIFL----SPSVCLCDCPGLVFPS  373 (562)
T ss_pred             CceeEEEeecCCCCchhHHHHHHhcCceeee-ecCCCCcceeEEEEc----CCCceecCCCCccccC
Confidence            3479999999999999999999999997655 457888888776554    4458899999997544

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.80  E-value=1e-08  Score=79.42  Aligned_cols=131  Identities=18%  Similarity=0.197  Sum_probs=88.6

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHH
Q 036158           11 KPTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVS   90 (225)
Q Consensus        11 ~~~~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~   90 (225)
                      .|.-.....-++.++|.+.+||||++..|.|...  ..+.+..+|-.+-.....+ .+-++.+.|.||+.+.+.+.....
T Consensus        51 gfDV~ktg~a~vg~vgFPSvGksTl~~~l~g~~s--~vasyefttl~~vpG~~~y-~gaKiqlldlpgiiegakdgkgrg  127 (358)
T KOG1487|consen   51 GFDVAKTGDARVGFVGFPSVGKSTLLSKLTGTFS--EVAAYEFTTLTTVPGVIRY-KGAKIQLLDLPGIIEGAKDGKGRG  127 (358)
T ss_pred             CccceeecceeeeEEecCccchhhhhhhhcCCCC--ccccccceeEEEecceEec-cccceeeecCcchhcccccCCCCc
Confidence            4454555567899999999999999999998763  2233444444444444445 888999999999998765444333


Q ss_pred             HHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccc-cccEEEEEecCCCC
Q 036158           91 KEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKI-SDYMIVVFTGGDEL  150 (225)
Q Consensus        91 ~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~vv~~k~D~~  150 (225)
                      +++.    ...+-++.+++|+|...+++  .+++++.-.+-|+-+. +.|.-+.+.|.|.-
T Consensus       128 ~qvi----avartcnli~~vld~~kp~~--hk~~ie~eleg~girlnk~pp~i~~kkKdkg  182 (358)
T KOG1487|consen  128 KQVI----AVARTCNLIFIVLDVLKPLS--HKKIIEKELEGFGIRLNKQPPNIGTKKKDKG  182 (358)
T ss_pred             cEEE----EEeecccEEEEEeeccCccc--HHHHHHHhhhcceeeccCCCCCccccccccC
Confidence            3332    23344589999999976665  5567777667777763 34666666666643

>cd01859 MJ1464 MJ1464

Probab=98.77  E-value=3.3e-08  Score=72.76  Aligned_cols=57  Identities=28%  Similarity=0.447  Sum_probs=40.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL   79 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (225)
                      ...+++++|.+|+||||++|++.+....... ...+.|...+..  ..  +..+.+|||||+
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~-~~~~~t~~~~~~--~~--~~~~~~~DtpGi  156 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSASTS-PSPGYTKGEQLV--KI--TSKIYLLDTPGV  156 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeeeeeEEE--Ec--CCCEEEEECcCC
Confidence            4578999999999999999999986643332 234445444322  22  346899999995

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK13796 GTPase YqeH; Provisional

Probab=98.75  E-value=1.8e-08  Score=84.18  Aligned_cols=59  Identities=27%  Similarity=0.306  Sum_probs=41.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCc----cccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCC
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKR----AFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD   81 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~----~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (225)
                      ..++.++|.+|+|||||||+|++..    .....+..+++|+......  +  +....|+||||+..
T Consensus       160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~--l--~~~~~l~DTPGi~~  222 (365)
T PRK13796        160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIP--L--DDGSFLYDTPGIIH  222 (365)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEE--c--CCCcEEEECCCccc
Confidence            3579999999999999999998643    1112234567777654433  3  22358999999963

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.75  E-value=5.2e-08  Score=78.93  Aligned_cols=59  Identities=31%  Similarity=0.361  Sum_probs=40.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCC------CCCceeEEEEEEEEeeCCceEEEEeCCCCCCC
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAG------SSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDS   82 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (225)
                      ..++++|++|+|||||+|+|++......+..      ...+|+......  ++.  ...++||||+.++
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~--~~~--~~~liDtPG~~~~  226 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFP--LPG--GGLLIDTPGFREF  226 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEE--cCC--CCEEEECCCCCcc
Confidence            6799999999999999999998765433221      122444444333  311  2379999999754

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.74  E-value=4.5e-08  Score=79.69  Aligned_cols=60  Identities=30%  Similarity=0.334  Sum_probs=40.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCC------CCceeEEEEEEEEeeCCceEEEEeCCCCCCC
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGS------SGVTKTCEMQRTMLKDGQVVNVIDTPGLFDS   82 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (225)
                      ...++++|++|+|||||+|+|++......+...      ..+|+......  ++.  ...|+||||+...
T Consensus       164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~--~~~--~~~~~DtpG~~~~  229 (298)
T PRK00098        164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYD--LPG--GGLLIDTPGFSSF  229 (298)
T ss_pred             CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEE--cCC--CcEEEECCCcCcc
Confidence            457899999999999999999987654332221      12444444433  322  2489999999854

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.74  E-value=1.3e-08  Score=83.78  Aligned_cols=120  Identities=18%  Similarity=0.202  Sum_probs=87.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCcccccc----------------CCCCCceeEEEEEEEEeeCCceEEEEeCCCC
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSK----------------AGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL   79 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (225)
                      ..+..+|+++.+..+||||....|+-......+                ....+.|.......+.| .|..+++|||||+
T Consensus        34 ~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdw-kg~rinlidtpgh  112 (753)
T KOG0464|consen   34 IAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDW-KGHRINLIDTPGH  112 (753)
T ss_pred             hhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeeccc-ccceEeeecCCCc
Confidence            355679999999999999999888744322111                11356788888888999 8999999999999


Q ss_pred             CCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158           80 FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED  152 (225)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~  152 (225)
                      .|+...       +.+    +.+-.|+++.|+|+..+........++.-.+     .+.|..+.+||+|+...
T Consensus       113 vdf~le-------ver----clrvldgavav~dasagve~qtltvwrqadk-----~~ip~~~finkmdk~~a  169 (753)
T KOG0464|consen  113 VDFRLE-------VER----CLRVLDGAVAVFDASAGVEAQTLTVWRQADK-----FKIPAHCFINKMDKLAA  169 (753)
T ss_pred             ceEEEE-------HHH----HHHHhcCeEEEEeccCCcccceeeeehhccc-----cCCchhhhhhhhhhhhh
Confidence            988532       222    3334599999999987766555444433332     34788999999998765

>cd00066 G-alpha G protein alpha subunit

Probab=98.70  E-value=6.5e-07  Score=73.55  Aligned_cols=85  Identities=11%  Similarity=0.139  Sum_probs=55.8

Q ss_pred             ceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCC--------CCHHHHHHH
Q 036158           54 VTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNR--------FSEEEGAAI  125 (225)
Q Consensus        54 ~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~--------~~~~~~~~~  125 (225)
                      .|.......+.+ ++..+.++|++|...           .++.|..+..+++++|||++..+-        ....-.+.+
T Consensus       147 ~T~Gi~~~~f~~-~~~~~~~~DvgGq~~-----------~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl  214 (317)
T cd00066         147 KTTGIVETKFTI-KNLKFRMFDVGGQRS-----------ERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESL  214 (317)
T ss_pred             ccCCeeEEEEEe-cceEEEEECCCCCcc-----------cchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHH
Confidence            344455555666 678899999999542           233444566789999999998621        112234455


Q ss_pred             HHHHHHhccc--ccccEEEEEecCCCC
Q 036158          126 HILESLFGKK--ISDYMIVVFTGGDEL  150 (225)
Q Consensus       126 ~~l~~~~~~~--~~~~~~vv~~k~D~~  150 (225)
                      ..+..++...  ...|+++++||.|..
T Consensus       215 ~~f~~i~~~~~~~~~pill~~NK~D~f  241 (317)
T cd00066         215 NLFDSICNSRWFANTSIILFLNKKDLF  241 (317)
T ss_pred             HHHHHHHhCccccCCCEEEEccChHHH
Confidence            5555555443  247999999999965

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=98.70  E-value=1.8e-07  Score=77.55  Aligned_cols=144  Identities=21%  Similarity=0.186  Sum_probs=82.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccc-cccCCCCCceeEEEEEE-----------------------------EEeeC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAF-KSKAGSSGVTKTCEMQR-----------------------------TMLKD   67 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~-~~~~~~~~~t~~~~~~~-----------------------------~~~~~   67 (225)
                      +...|++||+||+||||.+-.|...... .....-.-.|+++.+..                             ..+ .
T Consensus       202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l-~  280 (407)
T COG1419         202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL-R  280 (407)
T ss_pred             cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-h
Confidence            3688999999999999999777654431 11111112344443322                             111 3


Q ss_pred             CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 036158           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGG  147 (225)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~  147 (225)
                      ++.++|+||.|....   +.....++...+...  ...-+.||++++..    ...+.+.+.+ |+.  ...--+++||.
T Consensus       281 ~~d~ILVDTaGrs~~---D~~~i~el~~~~~~~--~~i~~~Lvlsat~K----~~dlkei~~~-f~~--~~i~~~I~TKl  348 (407)
T COG1419         281 DCDVILVDTAGRSQY---DKEKIEELKELIDVS--HSIEVYLVLSATTK----YEDLKEIIKQ-FSL--FPIDGLIFTKL  348 (407)
T ss_pred             cCCEEEEeCCCCCcc---CHHHHHHHHHHHhcc--ccceEEEEEecCcc----hHHHHHHHHH-hcc--CCcceeEEEcc
Confidence            457999999997643   444555565555444  23446667777622    2223333333 222  25567899999


Q ss_pred             CCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCC
Q 036158          148 DELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKT  187 (225)
Q Consensus       148 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (225)
                      |....-    -+         +-.++...+.++.++.+..
T Consensus       349 DET~s~----G~---------~~s~~~e~~~PV~YvT~GQ  375 (407)
T COG1419         349 DETTSL----GN---------LFSLMYETRLPVSYVTNGQ  375 (407)
T ss_pred             cccCch----hH---------HHHHHHHhCCCeEEEeCCC
Confidence            965432    11         4456666677777776643

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.70  E-value=1.4e-07  Score=82.86  Aligned_cols=118  Identities=25%  Similarity=0.339  Sum_probs=80.2

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccC--------------CCCCceeEEEEEEEEeeCCceEEEEeCCCC
Q 036158           14 SPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKA--------------GSSGVTKTCEMQRTMLKDGQVVNVIDTPGL   79 (225)
Q Consensus        14 ~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (225)
                      ..+....+|.++.+...|||||..+|+..+...+..              ...+.|-..-...... .+..++|||+||+
T Consensus         4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~-~~~~~nlidspgh   82 (887)
T KOG0467|consen    4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLH-KDYLINLIDSPGH   82 (887)
T ss_pred             CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeecccccccc-CceEEEEecCCCc
Confidence            344566899999999999999999998766532211              1233444443333333 6778999999999


Q ss_pred             CCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHH--HHHHHhcccccccEEEEEecCCCC
Q 036158           80 FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIH--ILESLFGKKISDYMIVVFTGGDEL  150 (225)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~vv~~k~D~~  150 (225)
                      .|+.       .++..+.    .-.|++++.+|+-.+....+...++  |+..       ..+++|+||+|.+
T Consensus        83 vdf~-------sevssas----~l~d~alvlvdvvegv~~qt~~vlrq~~~~~-------~~~~lvinkidrl  137 (887)
T KOG0467|consen   83 VDFS-------SEVSSAS----RLSDGALVLVDVVEGVCSQTYAVLRQAWIEG-------LKPILVINKIDRL  137 (887)
T ss_pred             cchh-------hhhhhhh----hhcCCcEEEEeeccccchhHHHHHHHHHHcc-------CceEEEEehhhhH
Confidence            9874       2233333    3348989999987788777766665  3333       4668899999943

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.68  E-value=7.7e-08  Score=74.28  Aligned_cols=26  Identities=19%  Similarity=0.402  Sum_probs=22.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ...++|+|+|+.|+|||||++.++..
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~~   45 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLIDN   45 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            35789999999999999999998754

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.67  E-value=3.6e-07  Score=75.98  Aligned_cols=144  Identities=21%  Similarity=0.183  Sum_probs=79.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCc------cccccCC-CC-C---------ceeEEEEEEEE-----------ee--C
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKR------AFKSKAG-SS-G---------VTKTCEMQRTM-----------LK--D   67 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~------~~~~~~~-~~-~---------~t~~~~~~~~~-----------~~--~   67 (225)
                      ....|+|+|++|+||||++..|...-      +.....+ .. +         ....+......           ..  .
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~  319 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA  319 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence            34689999999999999998885321      1000000 00 0         00000000000           00  1


Q ss_pred             CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 036158           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGG  147 (225)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~  147 (225)
                      +..++||||||...   .+.....++.+.+...  .++.++||+++... ..+..+.++.+..      ...--+++||.
T Consensus       320 ~~DvVLIDTaGRs~---kd~~lm~EL~~~lk~~--~PdevlLVLsATtk-~~d~~~i~~~F~~------~~idglI~TKL  387 (436)
T PRK11889        320 RVDYILIDTAGKNY---RASETVEEMIETMGQV--EPDYICLTLSASMK-SKDMIEIITNFKD------IHIDGIVFTKF  387 (436)
T ss_pred             CCCEEEEeCccccC---cCHHHHHHHHHHHhhc--CCCeEEEEECCccC-hHHHHHHHHHhcC------CCCCEEEEEcc
Confidence            34789999999753   3344555666655433  46788999887521 1122333333332      25567899999


Q ss_pred             CCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCC
Q 036158          148 DELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK  186 (225)
Q Consensus       148 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (225)
                      |.....             -.+-++...++.+..++.+-
T Consensus       388 DET~k~-------------G~iLni~~~~~lPIsyit~G  413 (436)
T PRK11889        388 DETASS-------------GELLKIPAVSSAPIVLMTDG  413 (436)
T ss_pred             cCCCCc-------------cHHHHHHHHHCcCEEEEeCC
Confidence            965432             11455666778777777653

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.66  E-value=7.7e-07  Score=76.67  Aligned_cols=175  Identities=15%  Similarity=0.154  Sum_probs=91.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCc--------cccccCCC-C-C---------ceeEEEEEEE-----------Eee
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKR--------AFKSKAGS-S-G---------VTKTCEMQRT-----------MLK   66 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~--------~~~~~~~~-~-~---------~t~~~~~~~~-----------~~~   66 (225)
                      .....|+|+|++|+||||++..|...-        +.-..... . +         ..........           .+ 
T Consensus       348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-  426 (559)
T PRK12727        348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-  426 (559)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-
Confidence            456789999999999999998876421        10000000 0 0         0000001110           11 


Q ss_pred             CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 036158           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTG  146 (225)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k  146 (225)
                      .+..++||||||....   +.....++.. +....  ....++|++....... -.+.++.+...      .+.-+|+||
T Consensus       427 ~~~DLVLIDTaG~s~~---D~~l~eeL~~-L~aa~--~~a~lLVLpAtss~~D-l~eii~~f~~~------~~~gvILTK  493 (559)
T PRK12727        427 RDYKLVLIDTAGMGQR---DRALAAQLNW-LRAAR--QVTSLLVLPANAHFSD-LDEVVRRFAHA------KPQGVVLTK  493 (559)
T ss_pred             ccCCEEEecCCCcchh---hHHHHHHHHH-HHHhh--cCCcEEEEECCCChhH-HHHHHHHHHhh------CCeEEEEec
Confidence            2457999999998632   2222222221 21111  2346677777532221 12334433332      567899999


Q ss_pred             CCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCcc-ccccHHHHHHHHHHHHHHHHHcCCCCCCHH
Q 036158          147 GDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKD-TAKRTEQVGKLLSLVNSVIVQNGGQPYTDE  219 (225)
Q Consensus       147 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~l~~~i~~~~~~~~~~~~~~~  219 (225)
                      +|.....    -.         +-.++...+.++.++.+.... ..........|...+..+-.+... +++.+
T Consensus       494 lDEt~~l----G~---------aLsv~~~~~LPI~yvt~GQ~VPeDL~~A~~~~Lv~r~~~l~~~~~~-~~~~~  553 (559)
T PRK12727        494 LDETGRF----GS---------ALSVVVDHQMPITWVTDGQRVPDDLHRANAASLVLRLEDLRRAADK-PCTPE  553 (559)
T ss_pred             CcCccch----hH---------HHHHHHHhCCCEEEEeCCCCchhhhhcCCHHHHHHHHHHHHhhccC-CCChh
Confidence            9964321    11         344555667777776654332 112334556788888887776655 44433

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.62  E-value=1.3e-07  Score=81.25  Aligned_cols=123  Identities=16%  Similarity=0.189  Sum_probs=91.9

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhCCcccccc----------------CCCCCceeEEEEEEEEeeCCceEEEEeCC
Q 036158           14 SPSNGERNLVLVGRTGNGKSATANSILGKRAFKSK----------------AGSSGVTKTCEMQRTMLKDGQVVNVIDTP   77 (225)
Q Consensus        14 ~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~liDtP   77 (225)
                      .+.++..+|++.-+-.+||||+-+.++........                ....+.|.......+.| ...++++||||
T Consensus        34 ~~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w-~~~~iNiIDTP  112 (721)
T KOG0465|consen   34 IPLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTW-RDYRINIIDTP  112 (721)
T ss_pred             CchhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeee-ccceeEEecCC
Confidence            44567889999999999999999998865543221                11346777888888899 78899999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158           78 GLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN  153 (225)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~  153 (225)
                      |+.|+...-+           .+..-.|+.++|+++-.+......-..+.+..+     ..|.++.+||+|.+..+
T Consensus       113 GHvDFT~EVe-----------RALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry-----~vP~i~FiNKmDRmGa~  172 (721)
T KOG0465|consen  113 GHVDFTFEVE-----------RALRVLDGAVLVLDAVAGVESQTETVWRQMKRY-----NVPRICFINKMDRMGAS  172 (721)
T ss_pred             CceeEEEEeh-----------hhhhhccCeEEEEEcccceehhhHHHHHHHHhc-----CCCeEEEEehhhhcCCC
Confidence            9998842222           233345888888887667776676777777765     37999999999999775

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.61  E-value=5.6e-07  Score=80.78  Aligned_cols=163  Identities=19%  Similarity=0.168  Sum_probs=85.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCC-CceeEEEE------------------EE-----------EEeeCC
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSS-GVTKTCEM------------------QR-----------TMLKDG   68 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~-~~t~~~~~------------------~~-----------~~~~~~   68 (225)
                      .-.|+|+|++|+||||++..|.+......+.... -.+.+...                  ..           -.. .+
T Consensus       185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~-~~  263 (767)
T PRK14723        185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAAL-GD  263 (767)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHh-cC
Confidence            4578999999999999998887643211100000 00000000                  00           011 33


Q ss_pred             ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecC
Q 036158           69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGG  147 (225)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~  147 (225)
                      ..++||||||....   +..+.+++.....  ...++-+++|+++...  ..+ .+.++.+....+.   ...-+|+||.
T Consensus       264 ~D~VLIDTAGRs~~---d~~l~eel~~l~~--~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~---~i~glIlTKL  333 (767)
T PRK14723        264 KHLVLIDTVGMSQR---DRNVSEQIAMLCG--VGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGE---DVDGCIITKL  333 (767)
T ss_pred             CCEEEEeCCCCCcc---CHHHHHHHHHHhc--cCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccC---CCCEEEEecc
Confidence            47999999997632   3334444443322  2356778999998622  122 1233333321111   3457899999


Q ss_pred             CCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCcc-ccccHHHHHHHHHHHH
Q 036158          148 DELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKD-TAKRTEQVGKLLSLVN  205 (225)
Q Consensus       148 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~l~~~i~  205 (225)
                      |......             .+-.+....+.++.++.+-... .......-++|.+.+-
T Consensus       334 DEt~~~G-------------~iL~i~~~~~lPI~yit~GQ~VPdDL~~a~~~~lv~~ll  379 (767)
T PRK14723        334 DEATHLG-------------PALDTVIRHRLPVHYVSTGQKVPEHLELAQADELVDRAF  379 (767)
T ss_pred             CCCCCcc-------------HHHHHHHHHCCCeEEEecCCCChhhcccCCHHHHHHHHh
Confidence            9764321             1445666667777777654332 1122234455555553

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.60  E-value=4.5e-07  Score=84.49  Aligned_cols=126  Identities=17%  Similarity=0.230  Sum_probs=76.9

Q ss_pred             eeEEEEcCCCCCHHHHH-HHHhCCcccc----ccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCC----cHHHH
Q 036158           20 RNLVLVGRTGNGKSATA-NSILGKRAFK----SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSAD----SEFVS   90 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSli-n~l~~~~~~~----~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~----~~~~~   90 (225)
                      +=.+|+|++|+||||++ |+-+......    .....++ |..|+.     -.+..-++|||.|-+-...+    +...+
T Consensus       126 PWy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~g-T~~cdw-----wf~deaVlIDtaGry~~q~s~~~~~~~~W  199 (1188)
T COG3523         126 PWYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPG-TRNCDW-----WFTDEAVLIDTAGRYITQDSADEVDRAEW  199 (1188)
T ss_pred             CceEEecCCCCCcchHHhcccccCcchhhhccccccCCC-CcccCc-----ccccceEEEcCCcceecccCcchhhHHHH
Confidence            33578999999999999 4333222111    0111122 666652     24567899999997644332    22334


Q ss_pred             HHHHHHHhh--cCCCccEEEEEEeCCCCCCHHH----------HHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158           91 KEIVKCIGM--TKDGIHAVLVVFSVRNRFSEEE----------GAAIHILESLFGKKISDYMIVVFTGGDELEDN  153 (225)
Q Consensus        91 ~~~~~~~~~--~~~~~~~ii~v~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~  153 (225)
                      ..+...++.  ....+++||+.+++.+-.+...          +..+..+.+.++.+  .|+++++||.|++++.
T Consensus       200 ~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~--~PVYl~lTk~Dll~GF  272 (1188)
T COG3523         200 LGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHAR--LPVYLVLTKADLLPGF  272 (1188)
T ss_pred             HHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccC--CceEEEEecccccccH
Confidence            444444443  3457899999999863322222          22355566666654  8999999999998764

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.58  E-value=1.7e-06  Score=69.50  Aligned_cols=96  Identities=16%  Similarity=0.133  Sum_probs=55.9

Q ss_pred             CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh----cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEE
Q 036158           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM----TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIV  142 (225)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v  142 (225)
                      .+..++|+||||....   +.....++......    ....+|.+++|+++..  ..........+.+.+     ...-+
T Consensus       153 ~~~D~ViIDT~G~~~~---d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~~~~~~f~~~~-----~~~g~  222 (272)
T TIGR00064       153 RNIDVVLIDTAGRLQN---KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNALEQAKVFNEAV-----GLTGI  222 (272)
T ss_pred             CCCCEEEEeCCCCCcc---hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHHHHHHHHHhhC-----CCCEE
Confidence            4467999999998643   33344444443322    1235799999999962  333333334433322     46688


Q ss_pred             EEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeC
Q 036158          143 VFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDN  185 (225)
Q Consensus       143 v~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (225)
                      |+||.|.......             .-++....+.+..++.+
T Consensus       223 IlTKlDe~~~~G~-------------~l~~~~~~~~Pi~~~~~  252 (272)
T TIGR00064       223 ILTKLDGTAKGGI-------------ILSIAYELKLPIKFIGV  252 (272)
T ss_pred             EEEccCCCCCccH-------------HHHHHHHHCcCEEEEeC
Confidence            9999997544311             23344455666666654

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK14974 cell division protein FtsY; Provisional

Probab=98.58  E-value=1.5e-06  Score=71.59  Aligned_cols=94  Identities=16%  Similarity=0.116  Sum_probs=54.9

Q ss_pred             CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 036158           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGG  147 (225)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~  147 (225)
                      +..++|+||||....   +.....++.......  .+|.++||+++...  .+..+....+.+..     ..--+++||.
T Consensus       222 ~~DvVLIDTaGr~~~---~~~lm~eL~~i~~~~--~pd~~iLVl~a~~g--~d~~~~a~~f~~~~-----~~~giIlTKl  289 (336)
T PRK14974        222 GIDVVLIDTAGRMHT---DANLMDELKKIVRVT--KPDLVIFVGDALAG--NDAVEQAREFNEAV-----GIDGVILTKV  289 (336)
T ss_pred             CCCEEEEECCCccCC---cHHHHHHHHHHHHhh--CCceEEEeeccccc--hhHHHHHHHHHhcC-----CCCEEEEeee
Confidence            346999999997632   344555555444322  57899999998632  22222333333221     4568899999


Q ss_pred             CCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCC
Q 036158          148 DELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK  186 (225)
Q Consensus       148 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (225)
                      |.......             +-.+....+.++.++.+-
T Consensus       290 D~~~~~G~-------------~ls~~~~~~~Pi~~i~~G  315 (336)
T PRK14974        290 DADAKGGA-------------ALSIAYVIGKPILFLGVG  315 (336)
T ss_pred             cCCCCccH-------------HHHHHHHHCcCEEEEeCC
Confidence            97543211             233444457777766543

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.58  E-value=2.7e-07  Score=73.28  Aligned_cols=109  Identities=16%  Similarity=0.134  Sum_probs=58.7

Q ss_pred             ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHH-HHHHHhcccccccEEEEEecC
Q 036158           69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIH-ILESLFGKKISDYMIVVFTGG  147 (225)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~vv~~k~  147 (225)
                      ..++|+.|-|.++..       ..+.       .-+|.+++|.-....   ++.+.++ -+.++       -=++|+||.
T Consensus       144 ~DvIIVETVGvGQse-------v~I~-------~~aDt~~~v~~pg~G---D~~Q~iK~GimEi-------aDi~vINKa  199 (323)
T COG1703         144 YDVIIVETVGVGQSE-------VDIA-------NMADTFLVVMIPGAG---DDLQGIKAGIMEI-------ADIIVINKA  199 (323)
T ss_pred             CCEEEEEecCCCcch-------hHHh-------hhcceEEEEecCCCC---cHHHHHHhhhhhh-------hheeeEecc
Confidence            458999999988652       1121       134888888744311   2333332 23332       238999999


Q ss_pred             CCCCCCcccHHHHhhhcCCchHHHH---HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          148 DELEDNDETLEDYLGRECPKPLKEI---LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       148 D~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      |. ++......++...     ++..   -..-+++..    ...+++..+.++++|.+.|.++.+..
T Consensus       200 D~-~~A~~a~r~l~~a-----l~~~~~~~~~~~W~pp----v~~t~A~~g~Gi~~L~~ai~~h~~~~  256 (323)
T COG1703         200 DR-KGAEKAARELRSA-----LDLLREVWRENGWRPP----VVTTSALEGEGIDELWDAIEDHRKFL  256 (323)
T ss_pred             Ch-hhHHHHHHHHHHH-----HHhhcccccccCCCCc----eeEeeeccCCCHHHHHHHHHHHHHHH
Confidence            93 3322222222211     2211   111122222    23456667789999999999877654

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.56  E-value=2.7e-06  Score=69.71  Aligned_cols=147  Identities=16%  Similarity=0.151  Sum_probs=78.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCc------cccccCCC-C----------CceeEEEEEEEE---------------
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKR------AFKSKAGS-S----------GVTKTCEMQRTM---------------   64 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~------~~~~~~~~-~----------~~t~~~~~~~~~---------------   64 (225)
                      .+...|+++|++|+||||++..|.+.-      +.-..... .          ............               
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~  191 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA  191 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence            345789999999999999997775422      11000000 0          000001111100               


Q ss_pred             -eeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh---h-cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccccc
Q 036158           65 -LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG---M-TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDY  139 (225)
Q Consensus        65 -~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  139 (225)
                       ...+..++|+||||....   .....+++.....   . ....++..++|+++..+  .........+.+.     ...
T Consensus       192 ~~~~~~D~ViIDTaGr~~~---~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~a~~f~~~-----~~~  261 (318)
T PRK10416        192 AKARGIDVLIIDTAGRLHN---KTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQAKAFHEA-----VGL  261 (318)
T ss_pred             HHhCCCCEEEEeCCCCCcC---CHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHHHHHHHhh-----CCC
Confidence             013447999999997643   2333334443332   1 12357889999999733  2222222222222     146


Q ss_pred             EEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCC
Q 036158          140 MIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK  186 (225)
Q Consensus       140 ~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (225)
                      .-+|+||.|.....             -.+-++....+.++.++..-
T Consensus       262 ~giIlTKlD~t~~~-------------G~~l~~~~~~~~Pi~~v~~G  295 (318)
T PRK10416        262 TGIILTKLDGTAKG-------------GVVFAIADELGIPIKFIGVG  295 (318)
T ss_pred             CEEEEECCCCCCCc-------------cHHHHHHHHHCCCEEEEeCC
Confidence            68999999954332             11344555667777777653

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.56  E-value=8.7e-07  Score=74.87  Aligned_cols=144  Identities=15%  Similarity=0.149  Sum_probs=77.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCC-ceeEEEE------------------E-----------EEEee
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSG-VTKTCEM------------------Q-----------RTMLK   66 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~-~t~~~~~------------------~-----------~~~~~   66 (225)
                      ...-+|+++|++|+||||++..|.+...........+ .+.+...                  .           ...+ 
T Consensus       189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l-  267 (420)
T PRK14721        189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHEL-  267 (420)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHh-
Confidence            4457899999999999999998765321100000000 0000000                  0           0112 


Q ss_pred             CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 036158           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTG  146 (225)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k  146 (225)
                      .+..++++||+|....   .....+++... .. ....+-.+||+++...  ..+  + ..+...|..  ...--+|+||
T Consensus       268 ~~~d~VLIDTaGrsqr---d~~~~~~l~~l-~~-~~~~~~~~LVl~at~~--~~~--~-~~~~~~f~~--~~~~~~I~TK  335 (420)
T PRK14721        268 RGKHMVLIDTVGMSQR---DQMLAEQIAML-SQ-CGTQVKHLLLLNATSS--GDT--L-DEVISAYQG--HGIHGCIITK  335 (420)
T ss_pred             cCCCEEEecCCCCCcc---hHHHHHHHHHH-hc-cCCCceEEEEEcCCCC--HHH--H-HHHHHHhcC--CCCCEEEEEe
Confidence            3446899999997632   23334444332 22 2245668888888622  222  2 222233332  2566789999


Q ss_pred             CCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCC
Q 036158          147 GDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK  186 (225)
Q Consensus       147 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (225)
                      .|......             .+-.++...+.++.++.+-
T Consensus       336 lDEt~~~G-------------~~l~~~~~~~lPi~yvt~G  362 (420)
T PRK14721        336 VDEAASLG-------------IALDAVIRRKLVLHYVTNG  362 (420)
T ss_pred             eeCCCCcc-------------HHHHHHHHhCCCEEEEECC
Confidence            99754321             1344556667777777654

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.54  E-value=1.6e-06  Score=71.08  Aligned_cols=174  Identities=14%  Similarity=0.153  Sum_probs=106.7

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhCCccccccC------------CCCCceeEEEEEEEEeeC---------------
Q 036158           15 PSNGERNLVLVGRTGNGKSATANSILGKRAFKSKA------------GSSGVTKTCEMQRTMLKD---------------   67 (225)
Q Consensus        15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~------------~~~~~t~~~~~~~~~~~~---------------   67 (225)
                      ...+++.+++.|+.+.|||||+-+|+-...-+-..            ...+.|.......+-+.+               
T Consensus       113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~  192 (527)
T COG5258         113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK  192 (527)
T ss_pred             CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence            34678999999999999999998886444321110            011222222222222211               


Q ss_pred             -------CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccE
Q 036158           68 -------GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYM  140 (225)
Q Consensus        68 -------~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  140 (225)
                             +.-+.|+||-|+..      ++...++..   .-+++|-.++|+-+++..+...++.+-.+...     ..|+
T Consensus       193 ~~vv~~aDklVsfVDtvGHEp------wLrTtirGL---~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~-----~lPv  258 (527)
T COG5258         193 AAVVKRADKLVSFVDTVGHEP------WLRTTIRGL---LGQKVDYGLLVVAADDGVTKMTKEHLGIALAM-----ELPV  258 (527)
T ss_pred             hHhhhhcccEEEEEecCCccH------HHHHHHHHH---hccccceEEEEEEccCCcchhhhHhhhhhhhh-----cCCE
Confidence                   23588999999762      222223322   23477999999999888888887777666553     3799


Q ss_pred             EEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC-cEEEee------------------CCCccccccHHHHHHHH
Q 036158          141 IVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN-RCVLFD------------------NKTKDTAKRTEQVGKLL  201 (225)
Q Consensus       141 ~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------------------~~~~~~~~~~~~v~~l~  201 (225)
                      ++++||+|..+++  .+....++     +.++++..+. ++..-+                  +...+|+.++.+++-|.
T Consensus       259 iVvvTK~D~~~dd--r~~~v~~e-----i~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~  331 (527)
T COG5258         259 IVVVTKIDMVPDD--RFQGVVEE-----ISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLD  331 (527)
T ss_pred             EEEEEecccCcHH--HHHHHHHH-----HHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHH
Confidence            9999999988775  66666665     5555544332 222111                  12345667778887777


Q ss_pred             HHHHHHHH
Q 036158          202 SLVNSVIV  209 (225)
Q Consensus       202 ~~i~~~~~  209 (225)
                      +.+..+-+
T Consensus       332 e~f~~Lp~  339 (527)
T COG5258         332 EFFLLLPK  339 (527)
T ss_pred             HHHHhCCc
Confidence            77654433

>smart00275 G_alpha G protein alpha subunit

Probab=98.54  E-value=3.9e-06  Score=69.60  Aligned_cols=85  Identities=12%  Similarity=0.134  Sum_probs=56.5

Q ss_pred             ceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCC--------CCHHHHHHH
Q 036158           54 VTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNR--------FSEEEGAAI  125 (225)
Q Consensus        54 ~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~--------~~~~~~~~~  125 (225)
                      .|.......+.+ ++..+.++|..|..           ..++.|..+..+++++|||++..+-        ....-.+.+
T Consensus       170 ~T~Gi~~~~f~~-~~~~~~~~DvgGqr-----------~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl  237 (342)
T smart00275      170 PTTGIQETAFIV-KKLFFRMFDVGGQR-----------SERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESL  237 (342)
T ss_pred             CccceEEEEEEE-CCeEEEEEecCCch-----------hhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHH
Confidence            344555555666 77789999999953           2234444567789999999998731        112234455


Q ss_pred             HHHHHHhccc--ccccEEEEEecCCCC
Q 036158          126 HILESLFGKK--ISDYMIVVFTGGDEL  150 (225)
Q Consensus       126 ~~l~~~~~~~--~~~~~~vv~~k~D~~  150 (225)
                      ..+..++...  ...|+++++||.|..
T Consensus       238 ~~f~~l~~~~~~~~~piil~~NK~D~~  264 (342)
T smart00275      238 NLFESICNSRWFANTSIILFLNKIDLF  264 (342)
T ss_pred             HHHHHHHcCccccCCcEEEEEecHHhH
Confidence            5556655543  346999999999976

Subunit of G proteins that contains the guanine nucleotide binding site

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=98.52  E-value=4e-07  Score=72.57  Aligned_cols=73  Identities=26%  Similarity=0.300  Sum_probs=50.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCcc----ccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRA----FKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFV   89 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~----~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~   89 (225)
                      .+.++++.|+|-+|+|||||||++-....    .......++.|+..... +.+.....+.++||||.....-.+.+.
T Consensus       140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri~~rp~vy~iDTPGil~P~I~~~e~  216 (335)
T KOG2485|consen  140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRISHRPPVYLIDTPGILVPSIVDVED  216 (335)
T ss_pred             cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEeccCCceEEecCCCcCCCCCCCHHH
Confidence            35679999999999999999999764432    22233456677666542 233367789999999998765555443

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.51  E-value=3.9e-07  Score=75.84  Aligned_cols=150  Identities=17%  Similarity=0.180  Sum_probs=77.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCC-CCceeEEE------------------EEE-----------EEee
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGS-SGVTKTCE------------------MQR-----------TMLK   66 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~-~~~t~~~~------------------~~~-----------~~~~   66 (225)
                      ...-.++|+|++|+||||++..|........+... .-.|.+..                  ...           ..+ 
T Consensus       135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l-  213 (374)
T PRK14722        135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL-  213 (374)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh-
Confidence            34568999999999999999888653211100000 00011110                  000           112 


Q ss_pred             CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc---ccccEEEE
Q 036158           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK---ISDYMIVV  143 (225)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~vv  143 (225)
                      .+..++||||||....   +....+.+. .+.. ...+.-.++|+++...... -.+.+..+....+..   .....-+|
T Consensus       214 ~~~DlVLIDTaG~~~~---d~~l~e~La-~L~~-~~~~~~~lLVLsAts~~~~-l~evi~~f~~~~~~p~~~~~~~~~~I  287 (374)
T PRK14722        214 RNKHMVLIDTIGMSQR---DRTVSDQIA-MLHG-ADTPVQRLLLLNATSHGDT-LNEVVQAYRSAAGQPKAALPDLAGCI  287 (374)
T ss_pred             cCCCEEEEcCCCCCcc---cHHHHHHHH-HHhc-cCCCCeEEEEecCccChHH-HHHHHHHHHHhhcccccccCCCCEEE
Confidence            3457999999997633   233333332 2222 2344567888888633221 123444444432111   00245789


Q ss_pred             EecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCC
Q 036158          144 FTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK  186 (225)
Q Consensus       144 ~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (225)
                      +||.|.......             +-.++...+.++.++.+-
T Consensus       288 ~TKlDEt~~~G~-------------~l~~~~~~~lPi~yvt~G  317 (374)
T PRK14722        288 LTKLDEASNLGG-------------VLDTVIRYKLPVHYVSTG  317 (374)
T ss_pred             EeccccCCCccH-------------HHHHHHHHCcCeEEEecC
Confidence            999996543211             344555557776666553

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.51  E-value=1.3e-07  Score=73.92  Aligned_cols=104  Identities=20%  Similarity=0.218  Sum_probs=54.6

Q ss_pred             CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCC--CCCCHHHHHHHHHHHHHhcccccccEEEEEe
Q 036158           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVR--NRFSEEEGAAIHILESLFGKKISDYMIVVFT  145 (225)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~  145 (225)
                      +..++|+.|.|.++..       -.+       ..-+|.+++|+...  +.+...-.-+    .++       .=++|+|
T Consensus       121 G~D~IiiETVGvGQsE-------~~I-------~~~aD~~v~v~~Pg~GD~iQ~~KaGi----mEi-------aDi~vVN  175 (266)
T PF03308_consen  121 GFDVIIIETVGVGQSE-------VDI-------ADMADTVVLVLVPGLGDEIQAIKAGI----MEI-------ADIFVVN  175 (266)
T ss_dssp             T-SEEEEEEESSSTHH-------HHH-------HTTSSEEEEEEESSTCCCCCTB-TTH----HHH--------SEEEEE
T ss_pred             CCCEEEEeCCCCCccH-------HHH-------HHhcCeEEEEecCCCccHHHHHhhhh----hhh-------ccEEEEe
Confidence            4569999999988431       111       23459999998653  2222111112    222       2388999


Q ss_pred             cCCCCCCCcccHHHHhhhcCCchHHHHHHHcC-----CcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          146 GGDELEDNDETLEDYLGRECPKPLKEILQLCD-----NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       146 k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      |+|..     ..+....+     ++..++...     ++...+    .+++.++.++++|.+.|.++...
T Consensus       176 KaD~~-----gA~~~~~~-----l~~~l~l~~~~~~~W~ppV~----~tsA~~~~Gi~eL~~~i~~~~~~  231 (266)
T PF03308_consen  176 KADRP-----GADRTVRD-----LRSMLHLLREREDGWRPPVL----KTSALEGEGIDELWEAIDEHRDY  231 (266)
T ss_dssp             --SHH-----HHHHHHHH-----HHHHHHHCSTSCTSB--EEE----EEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCChH-----HHHHHHHH-----HHHHHhhccccccCCCCCEE----EEEeCCCCCHHHHHHHHHHHHHH
Confidence            99932     22233333     344443322     222223    33455678999999999876644

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.50  E-value=9.9e-07  Score=65.12  Aligned_cols=22  Identities=41%  Similarity=0.507  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCC
Q 036158           21 NLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      .++++|..|+|||||++.++..
T Consensus         2 ~~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           2 VTVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EEEEEECCCCCHHHHHHHHHhc
Confidence            5789999999999999988765

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.49  E-value=2e-06  Score=73.92  Aligned_cols=162  Identities=15%  Similarity=0.153  Sum_probs=81.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCC-ceeEEE------------------EE-----------EEEeeCC
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSG-VTKTCE------------------MQ-----------RTMLKDG   68 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~-~t~~~~------------------~~-----------~~~~~~~   68 (225)
                      ...|+|+|++|+||||++..|.+......+..... .+.+..                  ..           ...+ .+
T Consensus       256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L-~d  334 (484)
T PRK06995        256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSEL-RN  334 (484)
T ss_pred             CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhc-cC
Confidence            46799999999999999988875332111000000 000000                  00           0122 23


Q ss_pred             ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 036158           69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGD  148 (225)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D  148 (225)
                      ..+++|||+|....   ..... +....+..... ++-.+||+++...  .  ..+.+.++. |..  ....-+|+||.|
T Consensus       335 ~d~VLIDTaGr~~~---d~~~~-e~~~~l~~~~~-p~e~~LVLdAt~~--~--~~l~~i~~~-f~~--~~~~g~IlTKlD  402 (484)
T PRK06995        335 KHIVLIDTIGMSQR---DRMVS-EQIAMLHGAGA-PVKRLLLLNATSH--G--DTLNEVVQA-YRG--PGLAGCILTKLD  402 (484)
T ss_pred             CCeEEeCCCCcChh---hHHHH-HHHHHHhccCC-CCeeEEEEeCCCc--H--HHHHHHHHH-hcc--CCCCEEEEeCCC
Confidence            46899999996532   11122 22222222222 3447888888622  1  222233333 322  145678899999


Q ss_pred             CCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCcc-ccccHHHHHHHHHHHHH
Q 036158          149 ELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKD-TAKRTEQVGKLLSLVNS  206 (225)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~l~~~i~~  206 (225)
                      .....             -.+-.++...+.++.++.+-... .......-+.|.+.+-.
T Consensus       403 et~~~-------------G~~l~i~~~~~lPI~yvt~GQ~VPeDL~~a~~~~lv~~ll~  448 (484)
T PRK06995        403 EAASL-------------GGALDVVIRYKLPLHYVSNGQRVPEDLHLANKKFLLHRAFC  448 (484)
T ss_pred             Ccccc-------------hHHHHHHHHHCCCeEEEecCCCChhhhccCCHHHHHHHHhc
Confidence            65432             11445666667777777654332 11222334455555443

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.48  E-value=1.2e-06  Score=72.64  Aligned_cols=145  Identities=17%  Similarity=0.100  Sum_probs=79.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCc------cccccCC-CCC----------ceeEEEEEEEE-----------e--e
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKR------AFKSKAG-SSG----------VTKTCEMQRTM-----------L--K   66 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~------~~~~~~~-~~~----------~t~~~~~~~~~-----------~--~   66 (225)
                      .+...|+++|++|+||||++..|...-      +.-.... ...          ...........           .  .
T Consensus       204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~  283 (407)
T PRK12726        204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYV  283 (407)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhc
Confidence            446789999999999999997775321      1000000 000          00000000000           0  0


Q ss_pred             CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 036158           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTG  146 (225)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k  146 (225)
                      .+..++||||||...   .+.+...++.......  .+|.+++|+++.  ..  ..+..+.+.. |..  ...--+|+||
T Consensus       284 ~~~D~VLIDTAGr~~---~d~~~l~EL~~l~~~~--~p~~~~LVLsag--~~--~~d~~~i~~~-f~~--l~i~glI~TK  351 (407)
T PRK12726        284 NCVDHILIDTVGRNY---LAEESVSEISAYTDVV--HPDLTCFTFSSG--MK--SADVMTILPK-LAE--IPIDGFIITK  351 (407)
T ss_pred             CCCCEEEEECCCCCc---cCHHHHHHHHHHhhcc--CCceEEEECCCc--cc--HHHHHHHHHh-cCc--CCCCEEEEEc
Confidence            245789999999764   2344455555544332  457778887763  22  2234444433 322  2466889999


Q ss_pred             CCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCC
Q 036158          147 GDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK  186 (225)
Q Consensus       147 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (225)
                      .|......             .+-++....+.++.++.+-
T Consensus       352 LDET~~~G-------------~~Lsv~~~tglPIsylt~G  378 (407)
T PRK12726        352 MDETTRIG-------------DLYTVMQETNLPVLYMTDG  378 (407)
T ss_pred             ccCCCCcc-------------HHHHHHHHHCCCEEEEecC
Confidence            99754321             1445666778777776653

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.47  E-value=1.1e-06  Score=74.79  Aligned_cols=96  Identities=19%  Similarity=0.158  Sum_probs=53.9

Q ss_pred             CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 036158           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGG  147 (225)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~  147 (225)
                      +..++||||||....   +......+...+.. .....-+++|+++...  ..+   +..+.+.|..  ....-+++||+
T Consensus       299 ~~DlVlIDt~G~~~~---d~~~~~~L~~ll~~-~~~~~~~~LVl~a~~~--~~~---l~~~~~~f~~--~~~~~vI~TKl  367 (424)
T PRK05703        299 DCDVILIDTAGRSQR---DKRLIEELKALIEF-SGEPIDVYLVLSATTK--YED---LKDIYKHFSR--LPLDGLIFTKL  367 (424)
T ss_pred             CCCEEEEeCCCCCCC---CHHHHHHHHHHHhc-cCCCCeEEEEEECCCC--HHH---HHHHHHHhCC--CCCCEEEEecc
Confidence            357999999998533   33334445555442 2234567777887522  222   2222222322  13347899999


Q ss_pred             CCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCC
Q 036158          148 DELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKT  187 (225)
Q Consensus       148 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (225)
                      |.....    .         .+.+++...+.++.++.+-.
T Consensus       368 Det~~~----G---------~i~~~~~~~~lPv~yit~Gq  394 (424)
T PRK05703        368 DETSSL----G---------SILSLLIESGLPISYLTNGQ  394 (424)
T ss_pred             cccccc----c---------HHHHHHHHHCCCEEEEeCCC
Confidence            975432    1         14566677788877776643

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.47  E-value=1.4e-06  Score=73.27  Aligned_cols=143  Identities=15%  Similarity=0.146  Sum_probs=75.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCc-------cccccCCC-CC----------ceeEEEEEEE----------EeeCCce
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKR-------AFKSKAGS-SG----------VTKTCEMQRT----------MLKDGQV   70 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~-------~~~~~~~~-~~----------~t~~~~~~~~----------~~~~~~~   70 (225)
                      ...|+++|++|+||||++..|....       +.-..... ..          ..........          . ..+..
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~-~~~~D  301 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLA-RDGSE  301 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHH-hCCCC
Confidence            4579999999999999998776422       10000000 00          0000000000          0 02457


Q ss_pred             EEEEeCCCCCCCCCCcHHHHHHHHHHHhhcC-CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCC
Q 036158           71 VNVIDTPGLFDSSADSEFVSKEIVKCIGMTK-DGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDE  149 (225)
Q Consensus        71 ~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~  149 (225)
                      ++||||||+...   +....+++...+.... ...+-.+||+++...  ..+  + ..+.+.|..  ...--+|+||.|.
T Consensus       302 ~VLIDTaGr~~r---d~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~--~~~--~-~~~~~~f~~--~~~~glIlTKLDE  371 (432)
T PRK12724        302 LILIDTAGYSHR---NLEQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHH--T-LTVLKAYES--LNYRRILLTKLDE  371 (432)
T ss_pred             EEEEeCCCCCcc---CHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC--HHH--H-HHHHHHhcC--CCCCEEEEEcccC
Confidence            899999998633   2334444544443321 234578889998632  212  2 222223322  2566889999997


Q ss_pred             CCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeC
Q 036158          150 LEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDN  185 (225)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (225)
                      ......             +-.+....+.++.++.+
T Consensus       372 t~~~G~-------------il~i~~~~~lPI~ylt~  394 (432)
T PRK12724        372 ADFLGS-------------FLELADTYSKSFTYLSV  394 (432)
T ss_pred             CCCccH-------------HHHHHHHHCCCEEEEec
Confidence            543211             34455566777766655

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=98.40  E-value=1.5e-05  Score=65.49  Aligned_cols=85  Identities=15%  Similarity=0.154  Sum_probs=57.5

Q ss_pred             ceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCC--------CCCHHHHHHH
Q 036158           54 VTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRN--------RFSEEEGAAI  125 (225)
Q Consensus        54 ~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~--------~~~~~~~~~~  125 (225)
                      .|+...-..+.+ .+.++.++|.+|.-           .-++-|..+..+++++|||+...+        ..+..-.+.+
T Consensus       181 ~T~GI~e~~F~~-k~~~f~~~DvGGQR-----------seRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~  248 (354)
T KOG0082|consen  181 PTTGIVEVEFTI-KGLKFRMFDVGGQR-----------SERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESL  248 (354)
T ss_pred             CcCCeeEEEEEe-CCCceEEEeCCCcH-----------HHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHH
Confidence            566666677888 78999999999942           223344457889999999998751        1122224445


Q ss_pred             HHHHHHhccc--ccccEEEEEecCCCC
Q 036158          126 HILESLFGKK--ISDYMIVVFTGGDEL  150 (225)
Q Consensus       126 ~~l~~~~~~~--~~~~~~vv~~k~D~~  150 (225)
                      +.+...+..+  ...++++.+||.|+.
T Consensus       249 ~LF~sI~n~~~F~~tsiiLFLNK~DLF  275 (354)
T KOG0082|consen  249 KLFESICNNKWFANTSIILFLNKKDLF  275 (354)
T ss_pred             HHHHHHhcCcccccCcEEEEeecHHHH
Confidence            5555555444  235899999999976

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.38  E-value=6.7e-06  Score=70.10  Aligned_cols=92  Identities=14%  Similarity=0.080  Sum_probs=53.7

Q ss_pred             ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 036158           69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGD  148 (225)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D  148 (225)
                      ..++|+||||....   +....+++.......  .+|.+++|+|+...  .   ..++..+. |... ....-+|+||.|
T Consensus       176 ~DvVIIDTAGr~~~---d~~lm~El~~l~~~~--~pdevlLVvda~~g--q---~av~~a~~-F~~~-l~i~gvIlTKlD  243 (437)
T PRK00771        176 ADVIIVDTAGRHAL---EEDLIEEMKEIKEAV--KPDEVLLVIDATIG--Q---QAKNQAKA-FHEA-VGIGGIIITKLD  243 (437)
T ss_pred             CCEEEEECCCcccc---hHHHHHHHHHHHHHh--cccceeEEEecccc--H---HHHHHHHH-HHhc-CCCCEEEEeccc
Confidence            37899999997633   344555555543322  56889999998643  2   33344443 3221 134578999999


Q ss_pred             CCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeC
Q 036158          149 ELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDN  185 (225)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (225)
                      .......             +-.+....+.++.++.+
T Consensus       244 ~~a~~G~-------------~ls~~~~~~~Pi~fig~  267 (437)
T PRK00771        244 GTAKGGG-------------ALSAVAETGAPIKFIGT  267 (437)
T ss_pred             CCCcccH-------------HHHHHHHHCcCEEEEec
Confidence            6533211             34455556666666554

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.37  E-value=5.2e-07  Score=72.35  Aligned_cols=26  Identities=27%  Similarity=0.337  Sum_probs=22.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      .....|.|+|++|+|||||++.+++.
T Consensus       102 ~~~~~v~l~G~pGsGKTTLl~~l~~~  127 (290)
T PRK10463        102 RKQLVLNLVSSPGSGKTTLLTETLMR  127 (290)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45688999999999999999887754

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=98.36  E-value=1.1e-05  Score=57.97  Aligned_cols=164  Identities=13%  Similarity=0.101  Sum_probs=95.4

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158           15 PSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEI   93 (225)
Q Consensus        15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (225)
                      +....++|.++|....|||||+-...+...-..  ........+....+... -...+.+||..|..           +.
T Consensus        16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~--~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~-----------~~   82 (205)
T KOG1673|consen   16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEE--YTQTLGVNFMDKTVSIRGTDISFSIWDLGGQR-----------EF   82 (205)
T ss_pred             ccceEEEEEeecccccCceeeehhhhcchhHHH--HHHHhCccceeeEEEecceEEEEEEEecCCcH-----------hh
Confidence            456679999999999999999988877653211  11111122222222221 12367899999953           44


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcc-cHHHHhhhcCCchHHHH
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDE-TLEDYLGRECPKPLKEI  172 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~-~~~~~~~~~~~~~~~~~  172 (225)
                      .+++-.+...+-+++|.+|...+.+.  ....+|.++..+-..-.-.++|.||-|..-.-+. ..+....     ..+..
T Consensus        83 ~n~lPiac~dsvaIlFmFDLt~r~TL--nSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~-----qar~Y  155 (205)
T KOG1673|consen   83 INMLPIACKDSVAILFMFDLTRRSTL--NSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISR-----QARKY  155 (205)
T ss_pred             hccCceeecCcEEEEEEEecCchHHH--HHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHH-----HHHHH
Confidence            55665667788899999999854332  2355566655444322334678999886644321 2222222     25555


Q ss_pred             HHHcCCcEEEeeCCCccccccHHHHHHHHHHH
Q 036158          173 LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLV  204 (225)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i  204 (225)
                      .+..+....+.+..      +..++...+..+
T Consensus       156 Ak~mnAsL~F~Sts------~sINv~KIFK~v  181 (205)
T KOG1673|consen  156 AKVMNASLFFCSTS------HSINVQKIFKIV  181 (205)
T ss_pred             HHHhCCcEEEeecc------ccccHHHHHHHH
Confidence            55556555444332      336677766554

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.35  E-value=6.6e-06  Score=65.81  Aligned_cols=144  Identities=20%  Similarity=0.187  Sum_probs=79.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc------ccccCCCC-----------CceeEEEEEEEE-----------e--eC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA------FKSKAGSS-----------GVTKTCEMQRTM-----------L--KD   67 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~------~~~~~~~~-----------~~t~~~~~~~~~-----------~--~~   67 (225)
                      +..+++++|++|+||||++..|.+.-.      ........           ............           +  ..
T Consensus        74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~  153 (270)
T PRK06731         74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA  153 (270)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence            457999999999999999987754311      00000000           000000101000           0  02


Q ss_pred             CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 036158           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGG  147 (225)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~  147 (225)
                      +..+.|+||||....   +....+++...+...  .++-++||+++...    .....+.++. |..  ...--+++||.
T Consensus       154 ~~D~ViIDt~Gr~~~---~~~~l~el~~~~~~~--~~~~~~LVl~a~~~----~~d~~~~~~~-f~~--~~~~~~I~TKl  221 (270)
T PRK06731        154 RVDYILIDTAGKNYR---ASETVEEMIETMGQV--EPDYICLTLSASMK----SKDMIEIITN-FKD--IHIDGIVFTKF  221 (270)
T ss_pred             CCCEEEEECCCCCcC---CHHHHHHHHHHHhhh--CCCeEEEEEcCccC----HHHHHHHHHH-hCC--CCCCEEEEEee
Confidence            457899999997532   344555565554433  45778999998521    1223333333 222  25668899999


Q ss_pred             CCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCC
Q 036158          148 DELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK  186 (225)
Q Consensus       148 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (225)
                      |......             .+-++...++.+..++.+-
T Consensus       222 Det~~~G-------------~~l~~~~~~~~Pi~~it~G  247 (270)
T PRK06731        222 DETASSG-------------ELLKIPAVSSAPIVLMTDG  247 (270)
T ss_pred             cCCCCcc-------------HHHHHHHHHCcCEEEEeCC
Confidence            9764321             1344556667777776653

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.35  E-value=1.2e-05  Score=67.52  Aligned_cols=96  Identities=14%  Similarity=0.109  Sum_probs=54.5

Q ss_pred             CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 036158           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTG  146 (225)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k  146 (225)
                      .+..++|+||||....   +.....++...+.... ..+-.+||+++...  ..+  +.+.+..+ ..  ..+--+++||
T Consensus       253 ~~~DlVLIDTaGr~~~---~~~~l~el~~~l~~~~-~~~e~~LVlsat~~--~~~--~~~~~~~~-~~--~~~~~~I~TK  321 (388)
T PRK12723        253 KDFDLVLVDTIGKSPK---DFMKLAEMKELLNACG-RDAEFHLAVSSTTK--TSD--VKEIFHQF-SP--FSYKTVIFTK  321 (388)
T ss_pred             CCCCEEEEcCCCCCcc---CHHHHHHHHHHHHhcC-CCCeEEEEEcCCCC--HHH--HHHHHHHh-cC--CCCCEEEEEe
Confidence            3457999999997632   2223445555544332 23357899998633  222  22444443 11  1466889999


Q ss_pred             CCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCC
Q 036158          147 GDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK  186 (225)
Q Consensus       147 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (225)
                      .|......             .+-.+....+.++.++.+-
T Consensus       322 lDet~~~G-------------~~l~~~~~~~~Pi~yit~G  348 (388)
T PRK12723        322 LDETTCVG-------------NLISLIYEMRKEVSYVTDG  348 (388)
T ss_pred             ccCCCcch-------------HHHHHHHHHCCCEEEEeCC
Confidence            99654321             1344555667776666553

>KOG2484 consensus GTPase [General function prediction only]

Probab=98.34  E-value=3.7e-07  Score=74.89  Aligned_cols=63  Identities=22%  Similarity=0.367  Sum_probs=49.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCC
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS   83 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~   83 (225)
                      ....++++|+|-+|+||||+||+|.....+.++. .++.|+..+.  +.  -+..|.|+|.||+.-..
T Consensus       249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~-~pGvT~smqe--V~--Ldk~i~llDsPgiv~~~  311 (435)
T KOG2484|consen  249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGN-VPGVTRSMQE--VK--LDKKIRLLDSPGIVPPS  311 (435)
T ss_pred             cCcceEeeeecCCCCChhHHHHHHHHhccccCCC-Cccchhhhhh--ee--ccCCceeccCCceeecC
Confidence            3667999999999999999999999999887754 5566665432  32  47789999999987443

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.33  E-value=9.1e-06  Score=62.79  Aligned_cols=125  Identities=18%  Similarity=0.155  Sum_probs=67.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      .++|+++|..-+||||.-...+..-.....- .-..|.......+.. .-.++.+||.||.-++..+.-...        
T Consensus        27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTl-flESTski~~d~is~-sfinf~v~dfPGQ~~~Fd~s~D~e--------   96 (347)
T KOG3887|consen   27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETL-FLESTSKITRDHISN-SFINFQVWDFPGQMDFFDPSFDYE--------   96 (347)
T ss_pred             CceEEEEeecccCcchhhheeeeccCCCcee-EeeccCcccHhhhhh-hhcceEEeecCCccccCCCccCHH--------
Confidence            4679999999999999887665433211100 000111111111111 123678999999887654332221        


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN  153 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~  153 (225)
                      +...++.++|||+|+.+.+-..-..+...+.....-....++=|.+.|.|.+.+.
T Consensus        97 ~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd  151 (347)
T KOG3887|consen   97 MIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDD  151 (347)
T ss_pred             HHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchh
Confidence            1234669999999997432222222222222222222335677889999988654

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=98.27  E-value=4.3e-07  Score=74.57  Aligned_cols=64  Identities=23%  Similarity=0.314  Sum_probs=49.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA   84 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (225)
                      ..+++.|+++|-+|+||||+||.|-...++.+.+ -++.|..-++...    -..|.|||+||+.....
T Consensus       304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAP-IpGETKVWQYItL----mkrIfLIDcPGvVyps~  367 (572)
T KOG2423|consen  304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAP-IPGETKVWQYITL----MKRIFLIDCPGVVYPSS  367 (572)
T ss_pred             CccceeeeeecCCCCchHHHHHHHhhcccccccC-CCCcchHHHHHHH----HhceeEecCCCccCCCC
Confidence            4678999999999999999999999999988754 4454544333322    34789999999986543

>TIGR00101 ureG urease accessory protein UreG

Probab=98.25  E-value=3.5e-05  Score=59.08  Aligned_cols=23  Identities=22%  Similarity=0.391  Sum_probs=20.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCC
Q 036158           20 RNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ++|+++|+.|+|||||++.+++.
T Consensus         2 ~~i~i~G~~GsGKTTll~~l~~~   24 (199)
T TIGR00101         2 LKIGVAGPVGSGKTALIEALTRA   24 (199)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            68999999999999999988764

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK10867 signal recognition particle protein; Provisional

Probab=98.23  E-value=5.3e-05  Score=64.55  Aligned_cols=70  Identities=16%  Similarity=0.156  Sum_probs=40.6

Q ss_pred             ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 036158           69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGD  148 (225)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D  148 (225)
                      ..++|+||||....   ++....++.......  .++.+++|+|+..  ..+.....+.+.+.+     ...-+|+||.|
T Consensus       184 ~DvVIIDTaGrl~~---d~~lm~eL~~i~~~v--~p~evllVlda~~--gq~av~~a~~F~~~~-----~i~giIlTKlD  251 (433)
T PRK10867        184 YDVVIVDTAGRLHI---DEELMDELKAIKAAV--NPDEILLVVDAMT--GQDAVNTAKAFNEAL-----GLTGVILTKLD  251 (433)
T ss_pred             CCEEEEeCCCCccc---CHHHHHHHHHHHHhh--CCCeEEEEEeccc--HHHHHHHHHHHHhhC-----CCCEEEEeCcc
Confidence            46999999996532   344444444433322  5677899999752  222223333333221     34578899999


Q ss_pred             CC
Q 036158          149 EL  150 (225)
Q Consensus       149 ~~  150 (225)
                      ..
T Consensus       252 ~~  253 (433)
T PRK10867        252 GD  253 (433)
T ss_pred             Cc
Confidence            54

>TIGR00959 ffh signal recognition particle protein

Probab=98.15  E-value=6.2e-05  Score=64.08  Aligned_cols=71  Identities=18%  Similarity=0.173  Sum_probs=41.8

Q ss_pred             CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 036158           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGG  147 (225)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~  147 (225)
                      +..++|+||||...   .+.....++......  -.++.++||+|+..  ..+.....+.+.+..     ...-+|+||.
T Consensus       182 ~~DvVIIDTaGr~~---~d~~l~~eL~~i~~~--~~p~e~lLVvda~t--gq~~~~~a~~f~~~v-----~i~giIlTKl  249 (428)
T TIGR00959       182 GFDVVIVDTAGRLQ---IDEELMEELAAIKEI--LNPDEILLVVDAMT--GQDAVNTAKTFNERL-----GLTGVVLTKL  249 (428)
T ss_pred             CCCEEEEeCCCccc---cCHHHHHHHHHHHHh--hCCceEEEEEeccc--hHHHHHHHHHHHhhC-----CCCEEEEeCc
Confidence            34689999999753   233344444444332  25688899999862  222333333333322     3457789999


Q ss_pred             CCC
Q 036158          148 DEL  150 (225)
Q Consensus       148 D~~  150 (225)
                      |..
T Consensus       250 D~~  252 (428)
T TIGR00959       250 DGD  252 (428)
T ss_pred             cCc
Confidence            954

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.13  E-value=9.9e-06  Score=66.32  Aligned_cols=142  Identities=17%  Similarity=0.142  Sum_probs=86.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCcccccc------------CCCCCceeEEEE--EE-------EEe---------
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSK------------AGSSGVTKTCEM--QR-------TML---------   65 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~------------~~~~~~t~~~~~--~~-------~~~---------   65 (225)
                      ..-..+++++|.-.+|||||+--|+.....+..            ....+.|...-.  ..       +.+         
T Consensus       164 qfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi  243 (591)
T KOG1143|consen  164 QFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEI  243 (591)
T ss_pred             cceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHH
Confidence            445789999999999999999888755431110            001111111100  00       000         


Q ss_pred             --eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEE
Q 036158           66 --KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVV  143 (225)
Q Consensus        66 --~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv  143 (225)
                        .....++++|..|...+.       +-....+..+  -+|-.++|+.++..++...++.+-.+..+     +.|++++
T Consensus       244 ~e~SSKlvTfiDLAGh~kY~-------~TTi~gLtgY--~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL-----~iPfFvl  309 (591)
T KOG1143|consen  244 VEKSSKLVTFIDLAGHAKYQ-------KTTIHGLTGY--TPHFACLVVSADRGITWTTREHLGLIAAL-----NIPFFVL  309 (591)
T ss_pred             HhhhcceEEEeecccchhhh-------eeeeeecccC--CCceEEEEEEcCCCCccccHHHHHHHHHh-----CCCeEEE
Confidence              011258889998865321       1111111122  57999999999888888888888877775     3799999


Q ss_pred             EecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158          144 FTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN  178 (225)
Q Consensus       144 ~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (225)
                      ++|+|+....  .++..+++     +.+++...|-
T Consensus       310 vtK~Dl~~~~--~~~~tv~~-----l~nll~~~Gc  337 (591)
T KOG1143|consen  310 VTKMDLVDRQ--GLKKTVKD-----LSNLLAKAGC  337 (591)
T ss_pred             EEeeccccch--hHHHHHHH-----HHHHHhhcCc
Confidence            9999987664  66666655     5555555443

>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=98.12  E-value=2.2e-06  Score=76.36  Aligned_cols=133  Identities=17%  Similarity=0.176  Sum_probs=85.4

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEE-----------------------------------
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEM-----------------------------------   60 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~-----------------------------------   60 (225)
                      ...-+.|+|+|..++||||.++++.|....+.+..  -.|+.+..                                   
T Consensus        26 ~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~g--ivTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI  103 (657)
T KOG0446|consen   26 FIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVG--IVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEI  103 (657)
T ss_pred             cccCCceEEecCCCCcchhHHHHhhcccccccccc--ceecccceeecccccCCcccchhccccccccccCCHHHHHHHH
Confidence            35568899999999999999999999765433211  01110000                                   


Q ss_pred             --------------------EEEEeeCCceEEEEeCCCCCCCCC--CcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCC
Q 036158           61 --------------------QRTMLKDGQVVNVIDTPGLFDSSA--DSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFS  118 (225)
Q Consensus        61 --------------------~~~~~~~~~~~~liDtPG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~  118 (225)
                                          ..+..+.-.+++++|+||+.....  ..+.+..++...+..+....+.+|+.+... ..+
T Consensus       104 ~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~a-n~d  182 (657)
T KOG0446|consen  104 RSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPA-NSD  182 (657)
T ss_pred             HhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccch-hhh
Confidence                                001111223689999999986553  334677788888888888889888877543 222


Q ss_pred             HHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158          119 EEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN  153 (225)
Q Consensus       119 ~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~  153 (225)
                      -..-+.+...++.  ......++.|+||+|.+...
T Consensus       183 ~ats~alkiarev--Dp~g~RTigvitK~DlmdkG  215 (657)
T KOG0446|consen  183 IATSPALVVAREV--DPGGSRTLEVITKFDFMDKG  215 (657)
T ss_pred             hhcCHHHHHHHhh--CCCccchhHHhhhHHhhhcC
Confidence            2223355555554  12346899999999987544

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.11  E-value=2.5e-05  Score=58.00  Aligned_cols=119  Identities=19%  Similarity=0.099  Sum_probs=70.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC-ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG-QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ....+++++|..|.||||++++.+-...........+  ...+...+....+ ..+..|||.|..-.....+        
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~G--v~~~pl~f~tn~g~irf~~wdtagqEk~gglrd--------   77 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLG--VEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRD--------   77 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcce--eEEeeeeeecccCcEEEEeeecccceeeccccc--------
Confidence            3478999999999999999988876664332222222  2222222221122 5899999999764432221        


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELE  151 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~  151 (225)
                         .++-.....|+.+|...+++-.. .++.+.+...+++   .|+++..||.|...
T Consensus        78 ---gyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~N---iPiv~cGNKvDi~~  128 (216)
T KOG0096|consen   78 ---GYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVREN---IPIVLCGNKVDIKA  128 (216)
T ss_pred             ---ccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcC---CCeeeeccceeccc
Confidence               12223455666677765554443 2344445544443   79999999999653

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.10  E-value=3.1e-05  Score=60.37  Aligned_cols=27  Identities=26%  Similarity=0.332  Sum_probs=23.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAF   45 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~   45 (225)
                      .=.|+++|++|||||||+|.+.|-...
T Consensus        29 GEfvsilGpSGcGKSTLLriiAGL~~p   55 (248)
T COG1116          29 GEFVAILGPSGCGKSTLLRLIAGLEKP   55 (248)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            356899999999999999999987653

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.05  E-value=2.5e-06  Score=67.94  Aligned_cols=170  Identities=16%  Similarity=0.168  Sum_probs=96.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccc-cCCCCCcee----------------------------------EEEEEE
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKS-KAGSSGVTK----------------------------------TCEMQR   62 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~-~~~~~~~t~----------------------------------~~~~~~   62 (225)
                      -.++|+-+|+...||||++.++.|-.-... ..-....|.                                  .|+...
T Consensus        37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g  116 (466)
T KOG0466|consen   37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPG  116 (466)
T ss_pred             eeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCC
Confidence            358899999999999999999987542100 000111111                                  111111


Q ss_pred             EE--eeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCC----CCCHHHHHHHHHHHHHhcccc
Q 036158           63 TM--LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRN----RFSEEEGAAIHILESLFGKKI  136 (225)
Q Consensus        63 ~~--~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~----~~~~~~~~~~~~l~~~~~~~~  136 (225)
                      ..  +.--+++.++|+||++-        .  +..++.. .--.|+.++++.+..    +.+.+....++.++-      
T Consensus       117 ~~~~~klvRHVSfVDCPGHDi--------L--MaTMLnG-aAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~L------  179 (466)
T KOG0466|consen  117 CEGKMKLVRHVSFVDCPGHDI--------L--MATMLNG-AAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKL------  179 (466)
T ss_pred             CCCceEEEEEEEeccCCchHH--------H--HHHHhcc-hHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhh------
Confidence            10  10124789999999751        1  1111111 112377777776652    344444445555443      


Q ss_pred             cccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCC
Q 036158          137 SDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQP  215 (225)
Q Consensus       137 ~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~  215 (225)
                       ++++++-||+|+...+ ...+++ ++     ++..+......   -.+..+.||.-..+++.+.++|.+.++..-+.|
T Consensus       180 -khiiilQNKiDli~e~-~A~eq~-e~-----I~kFi~~t~ae---~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf  247 (466)
T KOG0466|consen  180 -KHIIILQNKIDLIKES-QALEQH-EQ-----IQKFIQGTVAE---GAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDF  247 (466)
T ss_pred             -ceEEEEechhhhhhHH-HHHHHH-HH-----HHHHHhccccC---CCceeeehhhhccChHHHHHHHHhcCCCCcccc
Confidence             8999999999988654 223332 22     45555443221   112345566667899999999988776665544

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.05  E-value=1.9e-05  Score=62.15  Aligned_cols=24  Identities=38%  Similarity=0.533  Sum_probs=21.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           20 RNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      -.++|+|++|+|||||+.+|+|.-
T Consensus        31 ~~~~iiGPNGaGKSTLlK~iLGll   54 (254)
T COG1121          31 EITALIGPNGAGKSTLLKAILGLL   54 (254)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            568999999999999999999943

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=98.03  E-value=4e-07  Score=67.17  Aligned_cols=169  Identities=13%  Similarity=0.156  Sum_probs=100.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc---eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ---VVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~---~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      -.+++|+|.-|+||||++...+.......  ...............| +..   .+.|||..|...+.           .
T Consensus        25 L~k~lVig~~~vgkts~i~ryv~~nfs~~--yRAtIgvdfalkVl~w-dd~t~vRlqLwdIagQerfg-----------~   90 (229)
T KOG4423|consen   25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYH--YRATIGVDFALKVLQW-DDKTIVRLQLWDIAGQERFG-----------N   90 (229)
T ss_pred             hhhhheeeeccccchhHHHHHHHHHHHHH--HHHHHhHHHHHHHhcc-ChHHHHHHHHhcchhhhhhc-----------c
Confidence            46899999999999999988775542111  0111111122222344 222   67899999976442           2


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHH-----hcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESL-----FGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK  170 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~  170 (225)
                      +..-++..+++..+|+|.+...+.+-  ..+|.+..     +..+...|++++-||+|.-+..   ..+.        -+
T Consensus        91 mtrVyykea~~~~iVfdvt~s~tfe~--~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a---~~~~--------~~  157 (229)
T KOG4423|consen   91 MTRVYYKEAHGAFIVFDVTRSLTFEP--VSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSA---KNEA--------TR  157 (229)
T ss_pred             eEEEEecCCcceEEEEEccccccccH--HHHHHHhccCcccCCCCCcchheeccchhccChHh---hhhh--------HH
Confidence            33347788999999999975444332  33333332     2223346889999999965543   1111        11


Q ss_pred             HHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCC
Q 036158          171 EILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPY  216 (225)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~  216 (225)
                      .+-..|+.+  -|..-..++++...+++|..+.+.+++--+.+++.
T Consensus       158 ~~d~f~ken--gf~gwtets~Kenkni~Ea~r~lVe~~lvnd~q~~  201 (229)
T KOG4423|consen  158 QFDNFKKEN--GFEGWTETSAKENKNIPEAQRELVEKILVNDEQPI  201 (229)
T ss_pred             HHHHHHhcc--CccceeeeccccccChhHHHHHHHHHHHhhccCCc
Confidence            122222221  13334456677779999999988888877776554

>PRK01889 GTPase RsgA; Reviewed

Probab=98.03  E-value=4.3e-06  Score=69.78  Aligned_cols=60  Identities=33%  Similarity=0.499  Sum_probs=37.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCC------CCCceeEEEEEEEEeeCCceEEEEeCCCCCCC
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAG------SSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDS   82 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (225)
                      .-+++++|.+|+|||||+|.|++......+..      ...+|+.....  .++.+  ..++||||+.+.
T Consensus       195 g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~--~l~~~--~~l~DtpG~~~~  260 (356)
T PRK01889        195 GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELH--PLPSG--GLLIDTPGMREL  260 (356)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEE--EecCC--CeecCCCchhhh
Confidence            45899999999999999999998654322211      11123322222  23222  358899998654

>cd01858 NGP_1 NGP-1

Probab=98.00  E-value=2.2e-05  Score=57.76  Aligned_cols=91  Identities=15%  Similarity=0.143  Sum_probs=56.9

Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc
Q 036158          100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR  179 (225)
Q Consensus       100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (225)
                      ....+|++++|+|+..+....+..+.+.+...   ...+|+++|+||+|+.+..  ....+         ...++.. ..
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~---~~~~p~ilVlNKiDl~~~~--~~~~~---------~~~~~~~-~~   69 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLKKE---KPHKHLIFVLNKCDLVPTW--VTARW---------VKILSKE-YP   69 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccCHHHHHHHHhc---cCCCCEEEEEEchhcCCHH--HHHHH---------HHHHhcC-Cc
Confidence            44577999999999866665566666666542   1137999999999986432  22222         2222211 11


Q ss_pred             EEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          180 CVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       180 ~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      ..    ..+.|+..+.++++|++.+.++..
T Consensus        70 ~~----~~~iSa~~~~~~~~L~~~l~~~~~   95 (157)
T cd01858          70 TI----AFHASINNPFGKGSLIQLLRQFSK   95 (157)
T ss_pred             EE----EEEeeccccccHHHHHHHHHHHHh
Confidence            11    134556677899999999987753

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.00  E-value=0.00028  Score=52.73  Aligned_cols=73  Identities=18%  Similarity=0.144  Sum_probs=42.1

Q ss_pred             CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 036158           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGG  147 (225)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~  147 (225)
                      +..++++||||....   .......+......  ..++.+++|+++...  ....+.+..+.+..     ...-+|+||.
T Consensus        82 ~~d~viiDt~g~~~~---~~~~l~~l~~l~~~--~~~~~~~lVv~~~~~--~~~~~~~~~~~~~~-----~~~~viltk~  149 (173)
T cd03115          82 NFDVVIVDTAGRLQI---DENLMEELKKIKRV--VKPDEVLLVVDAMTG--QDAVNQAKAFNEAL-----GITGVILTKL  149 (173)
T ss_pred             CCCEEEEECcccchh---hHHHHHHHHHHHhh--cCCCeEEEEEECCCC--hHHHHHHHHHHhhC-----CCCEEEEECC
Confidence            446899999997532   22333444333221  247999999998522  22233333333322     2457888999


Q ss_pred             CCCCC
Q 036158          148 DELED  152 (225)
Q Consensus       148 D~~~~  152 (225)
                      |....
T Consensus       150 D~~~~  154 (173)
T cd03115         150 DGDAR  154 (173)
T ss_pred             cCCCC
Confidence            97654

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=98.00  E-value=1.6e-05  Score=65.68  Aligned_cols=145  Identities=20%  Similarity=0.242  Sum_probs=88.0

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhCCccc-----------------------------cccCCCCCceeEEEEEEEEe
Q 036158           15 PSNGERNLVLVGRTGNGKSATANSILGKRAF-----------------------------KSKAGSSGVTKTCEMQRTML   65 (225)
Q Consensus        15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~~~   65 (225)
                      +...+.+++++|+..+||||+-..|+.....                             .......+-|.......++.
T Consensus        75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt  154 (501)
T KOG0459|consen   75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET  154 (501)
T ss_pred             CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence            3477899999999999999999887653320                             01111345677788888888


Q ss_pred             eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-----CCHH-HHHHHHHHHHHhccccccc
Q 036158           66 KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNR-----FSEE-EGAAIHILESLFGKKISDY  139 (225)
Q Consensus        66 ~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~  139 (225)
                       ..+.++++|+||+-.+-          -+++ .-..++|+-++|+.+...     +..- +.+.-..+.+..+.   ++
T Consensus       155 -e~~~ftiLDApGHk~fv----------~nmI-~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv---~~  219 (501)
T KOG0459|consen  155 -ENKRFTILDAPGHKSFV----------PNMI-GGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGV---KH  219 (501)
T ss_pred             -cceeEEeeccCcccccc----------hhhc-cccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhcc---ce
Confidence             78899999999987552          1111 234467888888877311     1000 11222233333333   78


Q ss_pred             EEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158          140 MIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus       140 ~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      .++++||+|..... .+.+.|-+  +...+...++..|
T Consensus       220 lVv~vNKMddPtvn-Ws~eRy~E--~~~k~~~fLr~~g  254 (501)
T KOG0459|consen  220 LIVLINKMDDPTVN-WSNERYEE--CKEKLQPFLRKLG  254 (501)
T ss_pred             EEEEEEeccCCccC-cchhhHHH--HHHHHHHHHHHhc
Confidence            99999999976543 23333321  1222555565444

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=97.99  E-value=3.7e-05  Score=57.81  Aligned_cols=27  Identities=30%  Similarity=0.469  Sum_probs=23.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      +.-.++|+|++|+|||||++.|.|...
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (178)
T cd03229          25 AGEIVALLGPSGSGKSTLLRCIAGLEE   51 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            445789999999999999999998754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.93  E-value=4.7e-05  Score=62.53  Aligned_cols=26  Identities=35%  Similarity=0.427  Sum_probs=22.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccc
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAF   45 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~   45 (225)
                      =.++++|++|||||||++.|.|-...
T Consensus        30 ef~vllGPSGcGKSTlLr~IAGLe~~   55 (338)
T COG3839          30 EFVVLLGPSGCGKSTLLRMIAGLEEP   55 (338)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            45888999999999999999997753

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.93  E-value=0.00013  Score=61.18  Aligned_cols=70  Identities=16%  Similarity=0.101  Sum_probs=45.8

Q ss_pred             ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 036158           69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGD  148 (225)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D  148 (225)
                      ..++|+||.|-..   -++++..++...-..  -++|=++||+|+.-+  ++-....+.+.+..     .-.=||+||.|
T Consensus       183 ~DvvIvDTAGRl~---ide~Lm~El~~Ik~~--~~P~E~llVvDam~G--QdA~~~A~aF~e~l-----~itGvIlTKlD  250 (451)
T COG0541         183 YDVVIVDTAGRLH---IDEELMDELKEIKEV--INPDETLLVVDAMIG--QDAVNTAKAFNEAL-----GITGVILTKLD  250 (451)
T ss_pred             CCEEEEeCCCccc---ccHHHHHHHHHHHhh--cCCCeEEEEEecccc--hHHHHHHHHHhhhc-----CCceEEEEccc
Confidence            4699999999653   356666666554333  378999999998633  22333444555443     34568899999


Q ss_pred             CC
Q 036158          149 EL  150 (225)
Q Consensus       149 ~~  150 (225)
                      .-
T Consensus       251 Gd  252 (451)
T COG0541         251 GD  252 (451)
T ss_pred             CC
Confidence            54

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.92  E-value=0.00017  Score=52.58  Aligned_cols=21  Identities=24%  Similarity=0.468  Sum_probs=18.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhC
Q 036158           21 NLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~   41 (225)
                      +|+++|+.|+||||++..+..
T Consensus         1 ~i~~~G~~GsGKTt~~~~l~~   21 (148)
T cd03114           1 VIGITGVPGAGKSTLIDALIT   21 (148)
T ss_pred             CEEEECCCCCcHHHHHHHHHH
Confidence            378999999999999987753

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=97.91  E-value=0.00018  Score=60.21  Aligned_cols=129  Identities=19%  Similarity=0.250  Sum_probs=69.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcc-----------------ccccCCCCCceeEEEEE-----EEEeeCC--ceEE
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRA-----------------FKSKAGSSGVTKTCEMQ-----RTMLKDG--QVVN   72 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~-----------------~~~~~~~~~~t~~~~~~-----~~~~~~~--~~~~   72 (225)
                      ...+.|+|+|+.-+||||||..+...-+                 .+++.+..-.|+++.+.     .+.+.++  .+++
T Consensus        15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVR   94 (492)
T PF09547_consen   15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVR   94 (492)
T ss_pred             CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEE
Confidence            4568999999999999999998764322                 12222222334444332     2333222  3899


Q ss_pred             EEeCCCCCCCCCCc--HHHHHHH------------HHHHhh------cCCCccEEEEEEeCC------CCCCHHHHHHHH
Q 036158           73 VIDTPGLFDSSADS--EFVSKEI------------VKCIGM------TKDGIHAVLVVFSVR------NRFSEEEGAAIH  126 (225)
Q Consensus        73 liDtPG~~~~~~~~--~~~~~~~------------~~~~~~------~~~~~~~ii~v~~~~------~~~~~~~~~~~~  126 (225)
                      ++|+-|+-=..+..  +.-..++            ..+..-      ..+..=++++..|.+      +.+-..+.+.++
T Consensus        95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~  174 (492)
T PF09547_consen   95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE  174 (492)
T ss_pred             EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence            99999984211110  0000000            111100      011112445545553      123344566777


Q ss_pred             HHHHHhcccccccEEEEEecCCCC
Q 036158          127 ILESLFGKKISDYMIVVFTGGDEL  150 (225)
Q Consensus       127 ~l~~~~~~~~~~~~~vv~~k~D~~  150 (225)
                      .|+++     .+|++|++|-.+..
T Consensus       175 ELk~i-----gKPFvillNs~~P~  193 (492)
T PF09547_consen  175 ELKEI-----GKPFVILLNSTKPY  193 (492)
T ss_pred             HHHHh-----CCCEEEEEeCCCCC
Confidence            77775     48999999988744

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=97.89  E-value=0.00043  Score=56.00  Aligned_cols=28  Identities=21%  Similarity=0.559  Sum_probs=24.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      ....+|+|+|..|+||||||..|-|.+-
T Consensus        50 psgk~VlvlGdn~sGKtsLi~klqg~e~   77 (473)
T KOG3905|consen   50 PSGKNVLVLGDNGSGKTSLISKLQGSET   77 (473)
T ss_pred             CCCCeEEEEccCCCchhHHHHHhhcccc
Confidence            4567899999999999999999998773

>cd01859 MJ1464 MJ1464

Probab=97.88  E-value=0.00016  Score=53.02  Aligned_cols=89  Identities=15%  Similarity=0.113  Sum_probs=53.5

Q ss_pred             CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcE
Q 036158          101 KDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC  180 (225)
Q Consensus       101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (225)
                      ...+|++++|+|+.++....+..+.+.+..     ..+|+++|+||+|..+..  ...    .     +..+.+..+.++
T Consensus        10 ~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~-----~~~p~iiv~NK~Dl~~~~--~~~----~-----~~~~~~~~~~~~   73 (156)
T cd01859          10 IKESDVVLEVLDARDPELTRSRKLERYVLE-----LGKKLLIVLNKADLVPKE--VLE----K-----WKSIKESEGIPV   73 (156)
T ss_pred             HhhCCEEEEEeeCCCCcccCCHHHHHHHHh-----CCCcEEEEEEhHHhCCHH--HHH----H-----HHHHHHhCCCcE
Confidence            345799999999975544444344333322     137999999999975321  111    1     122222222222


Q ss_pred             EEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          181 VLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       181 ~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                            ...|+.++.++++|++.+.++++..
T Consensus        74 ------~~iSa~~~~gi~~L~~~l~~~~~~~   98 (156)
T cd01859          74 ------VYVSAKERLGTKILRRTIKELAKID   98 (156)
T ss_pred             ------EEEEccccccHHHHHHHHHHHHhhc
Confidence                  2345566789999999999887653

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.86  E-value=0.00045  Score=51.89  Aligned_cols=28  Identities=21%  Similarity=0.414  Sum_probs=24.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .+.-.++++|++|+|||||++.|.|...
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   50 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAGQLI   50 (177)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            4556899999999999999999998753

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma

Probab=97.85  E-value=0.00013  Score=58.22  Aligned_cols=67  Identities=28%  Similarity=0.268  Sum_probs=46.8

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCc-cccccCCCCCceeEEEEEEEEe--eCCceEEEEeCCCCCCC
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKR-AFKSKAGSSGVTKTCEMQRTML--KDGQVVNVIDTPGLFDS   82 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~-~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~liDtPG~~~~   82 (225)
                      ..+...|.|+|+..+|||.|+|.|++.. .|...+...+.|...-......  .++..+.++||.|+.+.
T Consensus        18 ~~~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~~   87 (260)
T PF02263_consen   18 DQPVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGDV   87 (260)
T ss_dssp             TSBEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTTT
T ss_pred             CCCEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhcccc
Confidence            3556789999999999999999999753 4555554555666544333222  13458999999999884

GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.

>cd01855 YqeH YqeH

Probab=97.83  E-value=4.8e-05  Score=57.80  Aligned_cols=100  Identities=11%  Similarity=-0.062  Sum_probs=58.2

Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHH-H
Q 036158           93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK-E  171 (225)
Q Consensus        93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~-~  171 (225)
                      +...+..+...+|++++|+|+.+........+    ....   ..+|+++|+||+|+....  ........     +. .
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l----~~~~---~~~~~ilV~NK~Dl~~~~--~~~~~~~~-----~~~~   89 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRL----RLFG---GNNPVILVGNKIDLLPKD--KNLVRIKN-----WLRA   89 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCccchhH----HHhc---CCCcEEEEEEchhcCCCC--CCHHHHHH-----HHHH
Confidence            46666778889999999999974433322222    1111   237999999999986542  11111111     11 0


Q ss_pred             H-HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          172 I-LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       172 ~-~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      . .+..+..   +......|+.++.++++|++.|.++++
T Consensus        90 ~~~~~~~~~---~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          90 KAAAGLGLK---PKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             HHHhhcCCC---cccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            1 1111211   112234566777999999999988775

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.81  E-value=0.001  Score=48.52  Aligned_cols=118  Identities=12%  Similarity=0.206  Sum_probs=64.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhC---CccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCC----------CCCCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILG---KRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTP----------GLFDS   82 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~---~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtP----------G~~~~   82 (225)
                      ..++|.+.|++|+||||++..+..   ...+.+..   ..|.+..     - ++.  .+.++|+.          |+...
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgG---f~t~EVR-----~-gGkR~GF~Ivdl~tg~~~~la~~~~~~~   74 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGG---FITPEVR-----E-GGKRIGFKIVDLATGEEGILARVGFSRP   74 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeee---EEeeeee-----c-CCeEeeeEEEEccCCceEEEEEcCCCCc
Confidence            358999999999999999976652   22121110   0111111     0 111  34444444          11111


Q ss_pred             C-----CCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 036158           83 S-----ADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGD  148 (225)
Q Consensus        83 ~-----~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D  148 (225)
                      .     .+-+...+....++..+...+|++|+- .+. ++......+.+.+.+.++++  +|++.++.+-+
T Consensus        75 rvGkY~V~v~~le~i~~~al~rA~~~aDvIIID-EIG-pMElks~~f~~~ve~vl~~~--kpliatlHrrs  141 (179)
T COG1618          75 RVGKYGVNVEGLEEIAIPALRRALEEADVIIID-EIG-PMELKSKKFREAVEEVLKSG--KPLIATLHRRS  141 (179)
T ss_pred             ccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEe-ccc-chhhccHHHHHHHHHHhcCC--CcEEEEEeccc
Confidence            1     122334445556666666667877652 223 55555677888888888765  78776666554

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=97.80  E-value=0.00023  Score=57.41  Aligned_cols=94  Identities=13%  Similarity=0.147  Sum_probs=58.1

Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                      .+.+......+|++++|+|+..+.+..+..+.+.+.       .+|+++|+||+|+.+..  ....         |.+.+
T Consensus        12 ~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~-------~kp~IiVlNK~DL~~~~--~~~~---------~~~~~   73 (276)
T TIGR03596        12 RREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG-------NKPRLIVLNKADLADPA--VTKQ---------WLKYF   73 (276)
T ss_pred             HHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC-------CCCEEEEEEccccCCHH--HHHH---------HHHHH
Confidence            334445556779999999997666655544444432       27999999999975331  1222         22233


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      +..+..++.+      |+.++.++++|++.+.+++++.
T Consensus        74 ~~~~~~vi~i------Sa~~~~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        74 EEKGIKALAI------NAKKGKGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             HHcCCeEEEE------ECCCcccHHHHHHHHHHHHHHh
Confidence            3323233333      3445678999999998887654

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=97.79  E-value=0.00011  Score=64.16  Aligned_cols=29  Identities=34%  Similarity=0.456  Sum_probs=25.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAF   45 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~   45 (225)
                      .+.-+|+|+|.+|+|||||++.|.|....
T Consensus        27 ~~G~riGLvG~NGaGKSTLLkilaG~~~~   55 (530)
T COG0488          27 NPGERIGLVGRNGAGKSTLLKILAGELEP   55 (530)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHcCCCcC
Confidence            45679999999999999999999998753

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=97.79  E-value=7.4e-05  Score=65.79  Aligned_cols=28  Identities=21%  Similarity=0.334  Sum_probs=24.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      ++.-+++++|++|+|||||++.|+|...
T Consensus       359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~  386 (529)
T TIGR02868       359 PPGERVAILGPSGSGKSTLLMLLTGLLD  386 (529)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3556789999999999999999998764

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.78  E-value=0.00033  Score=50.83  Aligned_cols=27  Identities=37%  Similarity=0.492  Sum_probs=23.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      +.-.++|+|++|+|||||++.|.|...
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~   51 (144)
T cd03221          25 PGDRIGLVGRNGAGKSTLLKLIAGELE   51 (144)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            445689999999999999999998764

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=97.76  E-value=0.00023  Score=52.94  Aligned_cols=28  Identities=25%  Similarity=0.442  Sum_probs=24.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .+.-.++|+|++|+|||||++.|.|...
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (166)
T cd03223          25 KPGDRLLITGPSGTGKSSLFRALAGLWP   52 (166)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3456789999999999999999998754

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=97.73  E-value=0.00038  Score=58.67  Aligned_cols=25  Identities=32%  Similarity=0.554  Sum_probs=22.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      -+|+++|+.|+|||||+..|+|.-.
T Consensus       614 SRiaIVGPNGVGKSTlLkLL~Gkl~  638 (807)
T KOG0066|consen  614 SRIAIVGPNGVGKSTLLKLLIGKLD  638 (807)
T ss_pred             ceeEEECCCCccHHHHHHHHhcCCC
Confidence            5799999999999999999998653

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=97.69  E-value=0.00018  Score=54.00  Aligned_cols=23  Identities=26%  Similarity=0.326  Sum_probs=20.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhC
Q 036158           19 ERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .++|.|.|++|||||+||..++.
T Consensus        13 ~~~i~v~Gp~GSGKTaLie~~~~   35 (202)
T COG0378          13 MLRIGVGGPPGSGKTALIEKTLR   35 (202)
T ss_pred             eEEEEecCCCCcCHHHHHHHHHH
Confidence            48999999999999999977664

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=97.68  E-value=0.00072  Score=50.56  Aligned_cols=28  Identities=29%  Similarity=0.362  Sum_probs=23.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .+.-.++|+|++|+|||||++.|.|...
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~   51 (173)
T cd03230          24 EKGEIYGLLGPNGAGKTTLIKIILGLLK   51 (173)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3445799999999999999999998753

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.67  E-value=0.00051  Score=55.88  Aligned_cols=147  Identities=16%  Similarity=0.162  Sum_probs=79.3

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCC------ccccccCCC-C----------CceeEEEEEEEEe-------------
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGK------RAFKSKAGS-S----------GVTKTCEMQRTML-------------   65 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~------~~~~~~~~~-~----------~~t~~~~~~~~~~-------------   65 (225)
                      .+....|+++|-+|+||||.|-.|...      ++....... +          +....+.......             
T Consensus       136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~  215 (340)
T COG0552         136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ  215 (340)
T ss_pred             CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence            345789999999999999999766422      111000000 0          0000000000000             


Q ss_pred             ---eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH---hhcC-CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccc
Q 036158           66 ---KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI---GMTK-DGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISD  138 (225)
Q Consensus        66 ---~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~  138 (225)
                         ..+..++|+||.|--..   ...++.++.+..   .... ..+|-+++|+|+..+  +.-..-.+.+.+..     .
T Consensus       216 ~Akar~~DvvliDTAGRLhn---k~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG--qnal~QAk~F~eav-----~  285 (340)
T COG0552         216 AAKARGIDVVLIDTAGRLHN---KKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG--QNALSQAKIFNEAV-----G  285 (340)
T ss_pred             HHHHcCCCEEEEeCcccccC---chhHHHHHHHHHHHhccccCCCCceEEEEEEcccC--hhHHHHHHHHHHhc-----C
Confidence               13346999999996533   334444444433   2222 346779999998633  33334445555543     2


Q ss_pred             cEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeC
Q 036158          139 YMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDN  185 (225)
Q Consensus       139 ~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (225)
                      -.=+++||.|.....             -.+-.+....+.++.++.-
T Consensus       286 l~GiIlTKlDgtAKG-------------G~il~I~~~l~~PI~fiGv  319 (340)
T COG0552         286 LDGIILTKLDGTAKG-------------GIILSIAYELGIPIKFIGV  319 (340)
T ss_pred             CceEEEEecccCCCc-------------ceeeeHHHHhCCCEEEEeC
Confidence            346899999954322             1134456666777776654

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.66  E-value=0.00024  Score=53.30  Aligned_cols=25  Identities=32%  Similarity=0.296  Sum_probs=21.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .+.-.++|+|++|+|||||++.+++
T Consensus        19 ~~G~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          19 PLNVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhh
Confidence            4556899999999999999999974

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd01856 YlqF YlqF

Probab=97.66  E-value=0.0004  Score=51.84  Aligned_cols=92  Identities=18%  Similarity=0.202  Sum_probs=53.8

Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                      .+.+......+|++++|+|+..+....+..+++.+    .   .+|+++|+||+|+....  ....         +.+.+
T Consensus        10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~----~---~k~~ilVlNK~Dl~~~~--~~~~---------~~~~~   71 (171)
T cd01856          10 LRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL----G---NKPRIIVLNKADLADPK--KTKK---------WLKYF   71 (171)
T ss_pred             HHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh----c---CCCEEEEEehhhcCChH--HHHH---------HHHHH
Confidence            33344455567999999999755554443333322    1   26899999999985331  1111         22222


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      +..+.+++.      .|+.++.++++|.+.+.+.+.
T Consensus        72 ~~~~~~vi~------iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          72 ESKGEKVLF------VNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             HhcCCeEEE------EECCCcccHHHHHHHHHHHHH
Confidence            222222222      344556889999999988753

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.65  E-value=0.00019  Score=55.52  Aligned_cols=46  Identities=20%  Similarity=0.176  Sum_probs=29.6

Q ss_pred             CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 036158          101 KDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDEL  150 (225)
Q Consensus       101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~  150 (225)
                      ..++|.+|.|+|.+ .   ...+..+.+.++-++-..+++.+|+||+|..
T Consensus       153 ~~~vD~vivVvDpS-~---~sl~taeri~~L~~elg~k~i~~V~NKv~e~  198 (255)
T COG3640         153 IEGVDLVIVVVDPS-Y---KSLRTAERIKELAEELGIKRIFVVLNKVDEE  198 (255)
T ss_pred             ccCCCEEEEEeCCc-H---HHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence            46789999999986 2   2233344444432221138999999999954

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=0.00033  Score=60.72  Aligned_cols=28  Identities=39%  Similarity=0.490  Sum_probs=25.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      ++.-+++++|++|+|||||+|.|.|...
T Consensus       345 ~~g~~talvG~SGaGKSTLl~lL~G~~~  372 (559)
T COG4988         345 KAGQLTALVGASGAGKSTLLNLLLGFLA  372 (559)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCcCC
Confidence            5567899999999999999999999775

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.64  E-value=0.00043  Score=52.68  Aligned_cols=78  Identities=17%  Similarity=0.189  Sum_probs=43.5

Q ss_pred             eEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHH---HHHHHHHHhcccccccEEEEEec
Q 036158           70 VVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGA---AIHILESLFGKKISDYMIVVFTG  146 (225)
Q Consensus        70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~vv~~k  146 (225)
                      .+.++|+||..+-- .--.+..++.+.+..-.-++ .++|+++.. -+....+-   .+..+....  ....|.+-|++|
T Consensus        99 dylifDcPGQIELy-tH~pVm~~iv~hl~~~~F~~-c~Vylldsq-f~vD~~KfiSG~lsAlsAMi--~lE~P~INvlsK  173 (273)
T KOG1534|consen   99 DYLIFDCPGQIELY-THLPVMPQIVEHLKQWNFNV-CVVYLLDSQ-FLVDSTKFISGCLSALSAMI--SLEVPHINVLSK  173 (273)
T ss_pred             CEEEEeCCCeeEEe-ecChhHHHHHHHHhcccCce-eEEEEeccc-hhhhHHHHHHHHHHHHHHHH--HhcCcchhhhhH
Confidence            58899999987542 12235566666665522122 355555653 22222211   222222221  234789999999


Q ss_pred             CCCCCC
Q 036158          147 GDELED  152 (225)
Q Consensus       147 ~D~~~~  152 (225)
                      +|++++
T Consensus       174 MDLlk~  179 (273)
T KOG1534|consen  174 MDLLKD  179 (273)
T ss_pred             HHHhhh
Confidence            998876

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.62  E-value=0.00083  Score=55.19  Aligned_cols=125  Identities=21%  Similarity=0.215  Sum_probs=66.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCcccc----------c-cCCCCCceeEEEEEEEEee----------------------
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFK----------S-KAGSSGVTKTCEMQRTMLK----------------------   66 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~----------~-~~~~~~~t~~~~~~~~~~~----------------------   66 (225)
                      +..+|-|.=|||||||||.|+....-.          . +-.....-..+....+++.                      
T Consensus         2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~   81 (323)
T COG0523           2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRR   81 (323)
T ss_pred             CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhc
Confidence            567889999999999999998655310          0 0000000000111111221                      


Q ss_pred             -CCceEEEEeCCCCCCCCCCcHHHHHHHHH-HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEE
Q 036158           67 -DGQVVNVIDTPGLFDSSADSEFVSKEIVK-CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVF  144 (225)
Q Consensus        67 -~~~~~~liDtPG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~  144 (225)
                       +.....+|.|-|+.++.    .+...+.. ......-..|.++-|+|+. .+......    +.+.+..+...-=++++
T Consensus        82 ~~~~D~ivIEtTGlA~P~----pv~~t~~~~~~l~~~~~ld~vvtvVDa~-~~~~~~~~----~~~~~~~Qia~AD~ivl  152 (323)
T COG0523          82 RDRPDRLVIETTGLADPA----PVIQTFLTDPELADGVRLDGVVTVVDAA-HFLEGLDA----IAELAEDQLAFADVIVL  152 (323)
T ss_pred             cCCCCEEEEeCCCCCCCH----HHHHHhccccccccceeeceEEEEEeHH-HhhhhHHH----HHHHHHHHHHhCcEEEE
Confidence             22457899999987652    11111111 0111223568899999997 43322211    22333233334558999


Q ss_pred             ecCCCCCCC
Q 036158          145 TGGDELEDN  153 (225)
Q Consensus       145 ~k~D~~~~~  153 (225)
                      ||.|...+.
T Consensus       153 NK~Dlv~~~  161 (323)
T COG0523         153 NKTDLVDAE  161 (323)
T ss_pred             ecccCCCHH
Confidence            999988764

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.62  E-value=0.00052  Score=50.84  Aligned_cols=28  Identities=25%  Similarity=0.324  Sum_probs=24.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .+.-.++|+|++|+|||||++.|.|...
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~   51 (163)
T cd03216          24 RRGEVHALLGENGAGKSTLMKILSGLYK   51 (163)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3446789999999999999999998764

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.59  E-value=0.0003  Score=54.37  Aligned_cols=19  Identities=37%  Similarity=0.629  Sum_probs=16.1

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 036158           22 LVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        22 i~v~G~~g~GKSSlin~l~   40 (225)
                      -+|+|++||||||..+.+.
T Consensus         5 qvVIGPPgSGKsTYc~g~~   23 (290)
T KOG1533|consen    5 QVVIGPPGSGKSTYCNGMS   23 (290)
T ss_pred             eEEEcCCCCCccchhhhHH
Confidence            5789999999999987653

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.59  E-value=0.00038  Score=49.13  Aligned_cols=21  Identities=29%  Similarity=0.515  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhCC
Q 036158           22 LVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        22 i~v~G~~g~GKSSlin~l~~~   42 (225)
                      |++.|++|+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999998843

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK13695 putative NTPase; Provisional

Probab=97.58  E-value=0.00062  Score=50.96  Aligned_cols=22  Identities=23%  Similarity=0.326  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ++|+|.|.+|+|||||+..+.+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~   22 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAE   22 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998754

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=97.58  E-value=0.00072  Score=54.88  Aligned_cols=93  Identities=15%  Similarity=0.200  Sum_probs=56.7

Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      +.+......+|++|+|+|+..+++.....+.+.+.       .+|+++|+||+|+.+..  ..+.         |.+.++
T Consensus        16 ~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~-------~kp~iiVlNK~DL~~~~--~~~~---------~~~~~~   77 (287)
T PRK09563         16 REIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG-------NKPRLLILNKSDLADPE--VTKK---------WIEYFE   77 (287)
T ss_pred             HHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC-------CCCEEEEEEchhcCCHH--HHHH---------HHHHHH
Confidence            33444555679999999997666655544433332       27999999999975321  1222         223333


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ..+..++.+      |+.++.++++|++.+.+++++.
T Consensus        78 ~~~~~vi~v------Sa~~~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         78 EQGIKALAI------NAKKGQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             HcCCeEEEE------ECCCcccHHHHHHHHHHHHHHH
Confidence            323333333      3445678999999998887654

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.58  E-value=0.0004  Score=59.25  Aligned_cols=142  Identities=19%  Similarity=0.279  Sum_probs=81.3

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCC--------------CCCceeEEEEEEEEe---------------e
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAG--------------SSGVTKTCEMQRTML---------------K   66 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~--------------~~~~t~~~~~~~~~~---------------~   66 (225)
                      ..+..++.|+.+...|||||..+|.......+...              ..+.|.........+               .
T Consensus        16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~   95 (842)
T KOG0469|consen   16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG   95 (842)
T ss_pred             ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence            45567899999999999999999885543222111              122333333222111               1


Q ss_pred             CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 036158           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTG  146 (225)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k  146 (225)
                      ++..++|||.||+.|+..       ++    -.+.+-.|+.+.|+|--++..-.+...+   ++..+++  ...++++||
T Consensus        96 ~~FLiNLIDSPGHVDFSS-------EV----TAALRVTDGALVVVDcv~GvCVQTETVL---rQA~~ER--IkPvlv~NK  159 (842)
T KOG0469|consen   96 NGFLINLIDSPGHVDFSS-------EV----TAALRVTDGALVVVDCVSGVCVQTETVL---RQAIAER--IKPVLVMNK  159 (842)
T ss_pred             cceeEEeccCCCcccchh-------hh----hheeEeccCcEEEEEccCceEechHHHH---HHHHHhh--ccceEEeeh
Confidence            334799999999998742       12    1234455888888886545443333333   3333333  333679999


Q ss_pred             CCCCCCC-cccHHHHhhhcCCchHHHHHHHcCC
Q 036158          147 GDELEDN-DETLEDYLGRECPKPLKEILQLCDN  178 (225)
Q Consensus       147 ~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  178 (225)
                      +|..--+ +-..++..+.     ++++.+..+.
T Consensus       160 ~DRAlLELq~~~EeLyqt-----f~R~VE~vNv  187 (842)
T KOG0469|consen  160 MDRALLELQLSQEELYQT-----FQRIVENVNV  187 (842)
T ss_pred             hhHHHHhhcCCHHHHHHH-----HHHHHhcccE
Confidence            9953111 1234444444     6777766554

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=97.56  E-value=0.00031  Score=50.66  Aligned_cols=49  Identities=12%  Similarity=0.085  Sum_probs=36.4

Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158          100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELE  151 (225)
Q Consensus       100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~  151 (225)
                      ....+|++++|+|+..+.+..+..+.+.+.+..   ..+|+++|+||+|+.+
T Consensus         8 ~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~---~~k~~iivlNK~DL~~   56 (141)
T cd01857           8 VVERSDIVVQIVDARNPLLFRPPDLERYVKEVD---PRKKNILLLNKADLLT   56 (141)
T ss_pred             HHhhCCEEEEEEEccCCcccCCHHHHHHHHhcc---CCCcEEEEEechhcCC
Confidence            344669999999997666666666677766542   1379999999999754

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=97.56  E-value=0.00026  Score=63.23  Aligned_cols=27  Identities=33%  Similarity=0.582  Sum_probs=24.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      ++.-+++++|++|+|||||++.|+|..
T Consensus       374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~  400 (588)
T PRK11174        374 PAGQRIALVGPSGAGKTSLLNALLGFL  400 (588)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            355778999999999999999999876

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.56  E-value=8e-05  Score=56.88  Aligned_cols=31  Identities=26%  Similarity=0.400  Sum_probs=25.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKS   47 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~   47 (225)
                      .+.=.++++|++|||||||+++|.+......
T Consensus        26 ~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~   56 (240)
T COG1126          26 EKGEVVVIIGPSGSGKSTLLRCLNGLEEPDS   56 (240)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCcCCCC
Confidence            3445789999999999999999998775443

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.55  E-value=8.4e-05  Score=45.41  Aligned_cols=20  Identities=30%  Similarity=0.511  Sum_probs=18.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 036158           21 NLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~   40 (225)
                      ..+|.|++|+||||++.++.
T Consensus        25 ~tli~G~nGsGKSTllDAi~   44 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQ   44 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999998865

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.55  E-value=0.00066  Score=55.84  Aligned_cols=25  Identities=28%  Similarity=0.333  Sum_probs=22.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      +.+..+|.|.-|||||||+|.++..
T Consensus         3 ~ipv~iltGFLGaGKTTll~~ll~~   27 (318)
T PRK11537          3 PIAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_pred             ccCEEEEEECCCCCHHHHHHHHHhc
Confidence            4578899999999999999999854

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.55  E-value=0.00085  Score=55.52  Aligned_cols=73  Identities=15%  Similarity=0.126  Sum_probs=46.6

Q ss_pred             CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 036158           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTG  146 (225)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k  146 (225)
                      ++..++|+||.|-.   ....++.+++.......  .+|-+|||+|+.-..  .-....+.+++..     .-.-+++||
T Consensus       182 e~fdvIIvDTSGRh---~qe~sLfeEM~~v~~ai--~Pd~vi~VmDasiGQ--aae~Qa~aFk~~v-----dvg~vIlTK  249 (483)
T KOG0780|consen  182 ENFDVIIVDTSGRH---KQEASLFEEMKQVSKAI--KPDEIIFVMDASIGQ--AAEAQARAFKETV-----DVGAVILTK  249 (483)
T ss_pred             cCCcEEEEeCCCch---hhhHHHHHHHHHHHhhc--CCCeEEEEEeccccH--hHHHHHHHHHHhh-----ccceEEEEe
Confidence            44579999999965   33456666666654333  689999999996332  2223344444432     244678899


Q ss_pred             CCCCC
Q 036158          147 GDELE  151 (225)
Q Consensus       147 ~D~~~  151 (225)
                      .|...
T Consensus       250 lDGha  254 (483)
T KOG0780|consen  250 LDGHA  254 (483)
T ss_pred             cccCC
Confidence            88653

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=97.55  E-value=0.008  Score=51.98  Aligned_cols=27  Identities=22%  Similarity=0.534  Sum_probs=23.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      .+...|+|+|..++||||||.+|.+..
T Consensus        23 ~~~k~vlvlG~~~~GKttli~~L~~~e   49 (472)
T PF05783_consen   23 PSEKSVLVLGDKGSGKTTLIARLQGIE   49 (472)
T ss_pred             CCCceEEEEeCCCCchHHHHHHhhccC
Confidence            455789999999999999999998654

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.54  E-value=8.6e-05  Score=53.42  Aligned_cols=22  Identities=36%  Similarity=0.539  Sum_probs=19.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCc
Q 036158           22 LVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        22 i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      |+|+|++|+||||+++.|.+..
T Consensus         2 i~i~GpsGsGKstl~~~L~~~~   23 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEF   23 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhcC
Confidence            7899999999999999999763

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.54  E-value=7.8e-05  Score=57.79  Aligned_cols=28  Identities=29%  Similarity=0.414  Sum_probs=23.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      ++.=.++++|++|||||||+|.|-+-..
T Consensus        29 ~~Ge~vaI~GpSGSGKSTLLniig~ld~   56 (226)
T COG1136          29 EAGEFVAIVGPSGSGKSTLLNLLGGLDK   56 (226)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            3445789999999999999999987664

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=97.54  E-value=0.00041  Score=51.81  Aligned_cols=27  Identities=26%  Similarity=0.396  Sum_probs=23.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      +.-.++|+|++|+|||||++.|.|...
T Consensus        27 ~G~~~~l~G~nGsGKstLl~~i~G~~~   53 (171)
T cd03228          27 PGEKVAIVGPSGSGKSTLLKLLLRLYD   53 (171)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            446789999999999999999999764

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=97.53  E-value=0.00062  Score=50.92  Aligned_cols=28  Identities=36%  Similarity=0.550  Sum_probs=23.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .+.-.++++|++|+|||||++.|.|...
T Consensus        26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~   53 (173)
T cd03246          26 EPGESLAIIGPSGSGKSTLARLILGLLR   53 (173)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence            3445789999999999999999998754

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=97.52  E-value=0.00033  Score=61.72  Aligned_cols=28  Identities=36%  Similarity=0.475  Sum_probs=24.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      ++.-+++++|++|+|||||++.|.|...
T Consensus       346 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~  373 (529)
T TIGR02857       346 PPGERVALVGPSGAGKSTLLNLLLGFVD  373 (529)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4567899999999999999999998765

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=97.51  E-value=0.00039  Score=60.85  Aligned_cols=44  Identities=23%  Similarity=0.256  Sum_probs=30.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEE
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEM   60 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~   60 (225)
                      ...-+|+++|+.|+|||||++.|.|......+....+.+....+
T Consensus       346 ~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igy  389 (530)
T COG0488         346 DRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGY  389 (530)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEE
Confidence            45678999999999999999999876643333223333433333

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=97.50  E-value=0.0024  Score=55.45  Aligned_cols=121  Identities=15%  Similarity=0.061  Sum_probs=69.6

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEe-eCCceEEEEeCCCCCCCCCCcHHHHHH
Q 036158           14 SPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTML-KDGQVVNVIDTPGLFDSSADSEFVSKE   92 (225)
Q Consensus        14 ~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~   92 (225)
                      ....+.+...++|+.++|||.++++++|...... . ..........-.+.. ....-+.|-|.+-........      
T Consensus       420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~-~-~~~~~~~~avn~v~~~g~~k~LiL~ei~~~~~~~l~~------  491 (625)
T KOG1707|consen  420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDN-N-TGTTKPRYAVNSVEVKGQQKYLILREIGEDDQDFLTS------  491 (625)
T ss_pred             cccceeeeEEEEcCCcCchHHHHHHHhccccccc-c-ccCCCCceeeeeeeeccccceEEEeecCccccccccC------
Confidence            3456678899999999999999999999876441 1 111111111112222 133456777776431111111      


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158           93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED  152 (225)
Q Consensus        93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~  152 (225)
                             ..-.+|++++++|...+.+-..   +..+.+....+...|+++|.+|+|+-+.
T Consensus       492 -------ke~~cDv~~~~YDsS~p~sf~~---~a~v~~~~~~~~~~Pc~~va~K~dlDe~  541 (625)
T KOG1707|consen  492 -------KEAACDVACLVYDSSNPRSFEY---LAEVYNKYFDLYKIPCLMVATKADLDEV  541 (625)
T ss_pred             -------ccceeeeEEEecccCCchHHHH---HHHHHHHhhhccCCceEEEeeccccchh
Confidence                   1124599999999874433322   2222222222345899999999997543

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=97.50  E-value=0.00062  Score=47.41  Aligned_cols=24  Identities=21%  Similarity=0.297  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           20 RNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      ++|+++|..|+|||+|+.++....
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~   24 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFP   24 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCC
Confidence            379999999999999999985433

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=97.50  E-value=0.00039  Score=57.28  Aligned_cols=138  Identities=18%  Similarity=0.173  Sum_probs=75.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccc------------cCCCCCcee--EEEEEE-----------------EEe--
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKS------------KAGSSGVTK--TCEMQR-----------------TML--   65 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~------------~~~~~~~t~--~~~~~~-----------------~~~--   65 (225)
                      +.+|+|+|...+|||||+-.|+.....+.            .....+.|.  ......                 .+|  
T Consensus       133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk  212 (641)
T KOG0463|consen  133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK  212 (641)
T ss_pred             eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence            57999999999999999988775432110            000000000  000101                 111  


Q ss_pred             ---eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEE
Q 036158           66 ---KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIV  142 (225)
Q Consensus        66 ---~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v  142 (225)
                         ....-+++||..|+..+-...      +   ..+.-.-+|.-.+.+-+...+-.-.++.+-....+     ..|+++
T Consensus       213 Ice~saKviTFIDLAGHEkYLKTT------v---FGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL-----~VPVfv  278 (641)
T KOG0463|consen  213 ICEDSAKVITFIDLAGHEKYLKTT------V---FGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALAL-----HVPVFV  278 (641)
T ss_pred             eccccceeEEEEeccchhhhhhee------e---eccccCCCCceEEEecccccceeccHHhhhhhhhh-----cCcEEE
Confidence               011258899999976321000      0   11233445666666655545444455555443333     279999


Q ss_pred             EEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158          143 VFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus       143 v~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      |+||+|.-+..  -+++.+..     +.++++.-+
T Consensus       279 VVTKIDMCPAN--iLqEtmKl-----l~rllkS~g  306 (641)
T KOG0463|consen  279 VVTKIDMCPAN--ILQETMKL-----LTRLLKSPG  306 (641)
T ss_pred             EEEeeccCcHH--HHHHHHHH-----HHHHhcCCC
Confidence            99999976654  55555555     777777733

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.50  E-value=9.4e-05  Score=55.11  Aligned_cols=27  Identities=30%  Similarity=0.448  Sum_probs=23.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      ..-.++++|++|+|||||+|.+.|...
T Consensus        24 ~ge~vAi~GpSGaGKSTLLnLIAGF~~   50 (231)
T COG3840          24 AGEIVAILGPSGAGKSTLLNLIAGFET   50 (231)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHhccC
Confidence            345799999999999999999998764

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=97.49  E-value=0.00065  Score=56.91  Aligned_cols=100  Identities=14%  Similarity=0.125  Sum_probs=58.8

Q ss_pred             HHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158           92 EIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE  171 (225)
Q Consensus        92 ~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~  171 (225)
                      .+.+.+......++++++|+|+.+....    +...+.+..+   .+|+++|+||+|+.+.. ...+.....     +++
T Consensus        52 ~f~~~l~~~~~~~~~Il~VvD~~d~~~s----~~~~l~~~~~---~~piilV~NK~DLl~k~-~~~~~~~~~-----l~~  118 (360)
T TIGR03597        52 DFLNLLNSLGDSNALIVYVVDIFDFEGS----LIPELKRFVG---GNPVLLVGNKIDLLPKS-VNLSKIKEW-----MKK  118 (360)
T ss_pred             HHHHHHhhcccCCcEEEEEEECcCCCCC----ccHHHHHHhC---CCCEEEEEEchhhCCCC-CCHHHHHHH-----HHH
Confidence            4445555666788999999998643332    2233333333   27999999999987543 112221111     333


Q ss_pred             HHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          172 ILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                      ..+..+...   ......|+.++.++++|++.|.++
T Consensus       119 ~~k~~g~~~---~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       119 RAKELGLKP---VDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HHHHcCCCc---CcEEEecCCCCCCHHHHHHHHHHH
Confidence            444444320   112234566779999999999776

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.48  E-value=9.6e-05  Score=52.87  Aligned_cols=26  Identities=27%  Similarity=0.447  Sum_probs=23.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .-.++|+|++|+|||||++.|.|...
T Consensus        11 g~~~~i~G~nGsGKStLl~~l~g~~~   36 (137)
T PF00005_consen   11 GEIVAIVGPNGSGKSTLLKALAGLLP   36 (137)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred             CCEEEEEccCCCccccceeeeccccc
Confidence            35689999999999999999998764

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.48  E-value=0.00064  Score=56.49  Aligned_cols=25  Identities=20%  Similarity=0.290  Sum_probs=21.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      +.+..+|.|.-|+|||||+|.++..
T Consensus         3 ~ipv~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         3 KIPVTIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             ccCEEEEEECCCCCHHHHHHHHHhc
Confidence            3467889999999999999999854

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=97.48  E-value=0.00017  Score=52.98  Aligned_cols=83  Identities=14%  Similarity=0.177  Sum_probs=46.9

Q ss_pred             cEEEEEEeCCCCCCHHHHHHHH-HHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEe
Q 036158          105 HAVLVVFSVRNRFSEEEGAAIH-ILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLF  183 (225)
Q Consensus       105 ~~ii~v~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (225)
                      |++++|+|+..+.+..+..+.. .+..     ..+|+++|+||+|+.+..  ....++.        .+.+......   
T Consensus         1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~-----~~~p~IiVlNK~Dl~~~~--~~~~~~~--------~~~~~~~~~i---   62 (155)
T cd01849           1 DVILEVLDARDPLGTRSPDIERVLIKE-----KGKKLILVLNKADLVPKE--VLRKWLA--------YLRHSYPTIP---   62 (155)
T ss_pred             CEEEEEEeccCCccccCHHHHHHHHhc-----CCCCEEEEEechhcCCHH--HHHHHHH--------HHHhhCCceE---
Confidence            6899999997555554433332 2221     137999999999985431  2222211        1111112122   


Q ss_pred             eCCCccccccHHHHHHHHHHHHHHH
Q 036158          184 DNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       184 ~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                         ...|+.++.++++|++.+.+..
T Consensus        63 ---i~vSa~~~~gi~~L~~~i~~~~   84 (155)
T cd01849          63 ---FKISATNGQGIEKKESAFTKQT   84 (155)
T ss_pred             ---EEEeccCCcChhhHHHHHHHHh
Confidence               2334556688999999886543

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=97.47  E-value=0.0014  Score=50.30  Aligned_cols=23  Identities=35%  Similarity=0.289  Sum_probs=20.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhC
Q 036158           19 ERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .-+++|+|++|+|||||+++|.+
T Consensus        29 ~~~~~l~G~Ng~GKStll~~i~~   51 (202)
T cd03243          29 GRLLLITGPNMGGKSTYLRSIGL   51 (202)
T ss_pred             CeEEEEECCCCCccHHHHHHHHH
Confidence            35899999999999999999873

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.41  E-value=5.6e-05  Score=56.36  Aligned_cols=25  Identities=32%  Similarity=0.458  Sum_probs=22.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      ..-++|.|++|+||||++++|+...
T Consensus         4 G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           4 GLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhc
Confidence            4568999999999999999999766

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.40  E-value=0.0014  Score=49.40  Aligned_cols=27  Identities=26%  Similarity=0.501  Sum_probs=23.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      +.-.++++|++|+|||||++.|.|...
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (182)
T cd03215          25 AGEIVGIAGLVGNGQTELAEALFGLRP   51 (182)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            445789999999999999999999764

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=97.38  E-value=0.00054  Score=61.23  Aligned_cols=28  Identities=36%  Similarity=0.517  Sum_probs=24.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .+.-+++++|++|+|||||++.|+|...
T Consensus       365 ~~Ge~iaIvG~SGsGKSTLl~lL~gl~~  392 (592)
T PRK10790        365 PSRGFVALVGHTGSGKSTLASLLMGYYP  392 (592)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            3456789999999999999999998764

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=97.34  E-value=0.002  Score=58.48  Aligned_cols=28  Identities=32%  Similarity=0.527  Sum_probs=24.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      ++.-+|+++|++|||||||++.|+|...
T Consensus       497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~  524 (709)
T COG2274         497 PPGEKVAIVGRSGSGKSTLLKLLLGLYK  524 (709)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4456799999999999999999998775

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.34  E-value=0.0018  Score=38.68  Aligned_cols=43  Identities=23%  Similarity=0.293  Sum_probs=28.8

Q ss_pred             CccEEEEEEeCCC--CCCHH-HHHHHHHHHHHhcccccccEEEEEecCC
Q 036158          103 GIHAVLVVFSVRN--RFSEE-EGAAIHILESLFGKKISDYMIVVFTGGD  148 (225)
Q Consensus       103 ~~~~ii~v~~~~~--~~~~~-~~~~~~~l~~~~~~~~~~~~~vv~~k~D  148 (225)
                      -.++++|++|.+.  +++-+ +..+++.++..|+.   +|+++|+||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~---~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPN---KPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTT---S-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCC---CCEEEEEeccC
Confidence            4589999999863  34444 45678899999875   89999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=97.33  E-value=0.00091  Score=59.59  Aligned_cols=28  Identities=29%  Similarity=0.417  Sum_probs=24.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .+.-+++++|++|+|||||++.|.|...
T Consensus       364 ~~G~~~aivG~sGsGKSTL~~ll~g~~~  391 (574)
T PRK11160        364 KAGEKVALLGRTGCGKSTLLQLLTRAWD  391 (574)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3456899999999999999999998764

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.33  E-value=0.0021  Score=46.22  Aligned_cols=104  Identities=19%  Similarity=0.138  Sum_probs=53.4

Q ss_pred             EEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCC
Q 036158           24 LVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDG  103 (225)
Q Consensus        24 v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~  103 (225)
                      .-|..|+||||+--.+...-. ..  .....-.+.+...-.+  ...++++|||+..+.         .....    ...
T Consensus         5 ~~~kgg~gkt~~~~~~a~~~~-~~--~~~~~~vd~D~~~~~~--~yd~VIiD~p~~~~~---------~~~~~----l~~   66 (139)
T cd02038           5 TSGKGGVGKTNISANLALALA-KL--GKRVLLLDADLGLANL--DYDYIIIDTGAGISD---------NVLDF----FLA   66 (139)
T ss_pred             EcCCCCCcHHHHHHHHHHHHH-HC--CCcEEEEECCCCCCCC--CCCEEEEECCCCCCH---------HHHHH----HHh
Confidence            457899999999755442210 00  0000000000000001  146899999974421         11122    224


Q ss_pred             ccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCC
Q 036158          104 IHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDE  149 (225)
Q Consensus       104 ~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~  149 (225)
                      +|.+++|++.+ ..+-.. ...++.+.+..   ...++.+|+|+++.
T Consensus        67 aD~vviv~~~~-~~s~~~~~~~l~~l~~~~---~~~~~~lVvN~~~~  109 (139)
T cd02038          67 ADEVIVVTTPE-PTSITDAYALIKKLAKQL---RVLNFRVVVNRAES  109 (139)
T ss_pred             CCeEEEEcCCC-hhHHHHHHHHHHHHHHhc---CCCCEEEEEeCCCC
Confidence            49999998876 333222 34555554432   23578899999873

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.31  E-value=0.00073  Score=57.30  Aligned_cols=101  Identities=14%  Similarity=0.170  Sum_probs=56.5

Q ss_pred             CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccc--ccEEEEE
Q 036158           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKIS--DYMIVVF  144 (225)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~vv~  144 (225)
                      ++..++|+||+|--   .++..++..+...+..  ..+|.|++|-.+-  ...+...-+..+.+.+.....  .---+++
T Consensus       465 ~gfDVvLiDTAGR~---~~~~~lm~~l~k~~~~--~~pd~i~~vgeal--vg~dsv~q~~~fn~al~~~~~~r~id~~~l  537 (587)
T KOG0781|consen  465 QGFDVVLIDTAGRM---HNNAPLMTSLAKLIKV--NKPDLILFVGEAL--VGNDSVDQLKKFNRALADHSTPRLIDGILL  537 (587)
T ss_pred             cCCCEEEEeccccc---cCChhHHHHHHHHHhc--CCCceEEEehhhh--hCcHHHHHHHHHHHHHhcCCCccccceEEE
Confidence            45679999999953   4455566666666543  4889999996652  112222334444444433211  1235789


Q ss_pred             ecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCC
Q 036158          145 TGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK  186 (225)
Q Consensus       145 ~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (225)
                      ||.|...       +.+..     .-.+.=..+.+++++.--
T Consensus       538 tk~dtv~-------d~vg~-----~~~m~y~~~~pi~fvg~g  567 (587)
T KOG0781|consen  538 TKFDTVD-------DKVGA-----AVSMVYITGKPILFVGVG  567 (587)
T ss_pred             Eeccchh-------hHHHH-----HhhheeecCCceEEEecC
Confidence            9999543       33333     333333445666665543

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.31  E-value=0.0076  Score=52.83  Aligned_cols=82  Identities=13%  Similarity=0.167  Sum_probs=46.1

Q ss_pred             cEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcc-cHHHHhhhcCCchHHHHHHHcCCcEEEe
Q 036158          105 HAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDE-TLEDYLGRECPKPLKEILQLCDNRCVLF  183 (225)
Q Consensus       105 ~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (225)
                      --+|||-|....+......+-+.|.++.......|++++++-+|....... ....+..+  ...-.+++..++.....|
T Consensus       133 ~kvILVEDlPN~~~~~~~~f~~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~--~L~~~~il~~~~i~~I~F  210 (519)
T PF03215_consen  133 KKVILVEDLPNVFHRDTSRFREALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAE--RLFPKEILNHPGITRIKF  210 (519)
T ss_pred             ceEEEeeccccccchhHHHHHHHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhh--hccCHHHHhCCCceEEEe
Confidence            457777777644444445566667766654322399999996654332200 01011000  112356777888888889


Q ss_pred             eCCCc
Q 036158          184 DNKTK  188 (225)
Q Consensus       184 ~~~~~  188 (225)
                      ++..+
T Consensus       211 NpIa~  215 (519)
T PF03215_consen  211 NPIAP  215 (519)
T ss_pred             cCCCH
Confidence            88766

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.30  E-value=0.00021  Score=49.96  Aligned_cols=21  Identities=29%  Similarity=0.545  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhC
Q 036158           21 NLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~   41 (225)
                      +|+|.|++||||||+.+.|..
T Consensus         1 vI~I~G~~gsGKST~a~~La~   21 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAE   21 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999974

...

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=97.28  E-value=0.00083  Score=61.22  Aligned_cols=28  Identities=29%  Similarity=0.515  Sum_probs=24.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .+.-+|+++|++|+|||||++.|.|...
T Consensus       489 ~~G~~iaIvG~sGsGKSTLlklL~gl~~  516 (694)
T TIGR03375       489 RPGEKVAIIGRIGSGKSTLLKLLLGLYQ  516 (694)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3456799999999999999999998764

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=97.27  E-value=0.00098  Score=59.30  Aligned_cols=29  Identities=24%  Similarity=0.340  Sum_probs=25.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAF   45 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~   45 (225)
                      .+.-+++++|++||||||++|.|.+....
T Consensus       353 ~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~  381 (567)
T COG1132         353 EPGEKVAIVGPSGSGKSTLIKLLLRLYDP  381 (567)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence            45678999999999999999999987643

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=97.26  E-value=0.0064  Score=46.33  Aligned_cols=27  Identities=30%  Similarity=0.533  Sum_probs=23.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      .+.-.++|+|++|+|||||++.|.|..
T Consensus        33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~   59 (194)
T cd03213          33 KPGELTAIMGPSGAGKSTLLNALAGRR   59 (194)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            445679999999999999999999875

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.25  E-value=0.00031  Score=54.19  Aligned_cols=27  Identities=26%  Similarity=0.369  Sum_probs=23.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      +.-.++|+|++|+|||||++.|.|...
T Consensus        26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~   52 (211)
T cd03225          26 KGEFVLIVGPNGSGKSTLLRLLNGLLG   52 (211)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            446789999999999999999998753

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=97.24  E-value=0.00027  Score=54.57  Aligned_cols=24  Identities=21%  Similarity=0.275  Sum_probs=22.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           21 NLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .++++|++|+|||||++.|.|...
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~~   50 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLTP   50 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCCC
Confidence            899999999999999999998653

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.23  E-value=0.00026  Score=55.60  Aligned_cols=28  Identities=29%  Similarity=0.437  Sum_probs=23.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .+.-.++|+|++|+|||||++.|.|...
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (235)
T cd03261          24 RRGEILAIIGPSGSGKSTLLRLIVGLLR   51 (235)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3445789999999999999999998753

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.22  E-value=0.0027  Score=46.54  Aligned_cols=26  Identities=35%  Similarity=0.474  Sum_probs=22.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      +.-.++|+|++|+|||||++.|.|..
T Consensus        24 ~g~~~~i~G~nGsGKStll~~l~g~~   49 (157)
T cd00267          24 AGEIVALVGPNGSGKSTLLRAIAGLL   49 (157)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34678999999999999999999865

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=97.22  E-value=0.00028  Score=53.59  Aligned_cols=27  Identities=30%  Similarity=0.341  Sum_probs=23.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      +.-.++|+|++|+|||||++.|.|...
T Consensus        17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~   43 (190)
T TIGR01166        17 RGEVLALLGANGAGKSTLLLHLNGLLR   43 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345689999999999999999998753

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.22  E-value=0.00027  Score=53.52  Aligned_cols=26  Identities=31%  Similarity=0.581  Sum_probs=22.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      ....++++|++|+|||||+++|++.-
T Consensus        24 ~g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          24 ARKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            35679999999999999999999764

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.22  E-value=0.00049  Score=53.04  Aligned_cols=32  Identities=22%  Similarity=0.263  Sum_probs=24.2

Q ss_pred             CCCCCCCCCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           10 SKPTSPSNGERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        10 ~~~~~~~~~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      |.+..+. ....|+|+|++|||||||++.|...
T Consensus         5 ~~~~~~~-~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738          5 WLFNKPA-KPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             cccCCCC-CCeEEEEECcCCCCHHHHHHHHHhc
Confidence            3334443 4567888999999999999999754

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.21  E-value=0.00029  Score=54.67  Aligned_cols=28  Identities=29%  Similarity=0.397  Sum_probs=23.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .+.-.++|+|++|+|||||++.|.|...
T Consensus        28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~   55 (218)
T cd03255          28 EKGEFVAIVGPSGSGKSTLLNILGGLDR   55 (218)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence            3445789999999999999999998753

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.20  E-value=0.00027  Score=53.32  Aligned_cols=27  Identities=30%  Similarity=0.405  Sum_probs=22.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      .+.-.++++|++|||||||+|.+.|.-
T Consensus        29 a~ge~vv~lGpSGcGKTTLLnl~AGf~   55 (259)
T COG4525          29 ASGELVVVLGPSGCGKTTLLNLIAGFV   55 (259)
T ss_pred             cCCCEEEEEcCCCccHHHHHHHHhcCc
Confidence            334568889999999999999998865

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=97.20  E-value=0.0003  Score=54.70  Aligned_cols=26  Identities=23%  Similarity=0.282  Sum_probs=23.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      +.-.++|+|++|+|||||++.|.|..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          25 RGEIFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44678999999999999999999875

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00235 udk uridine kinase

Probab=97.19  E-value=0.00032  Score=54.08  Aligned_cols=26  Identities=23%  Similarity=0.322  Sum_probs=22.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ++...|+|+|++|||||||++.|.+.
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999999864

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]

Probab=97.19  E-value=0.00052  Score=56.10  Aligned_cols=26  Identities=31%  Similarity=0.509  Sum_probs=23.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      ..+|++.|-||||||||+|+|++.-.
T Consensus       173 r~NILisGGTGSGKTTlLNal~~~i~  198 (355)
T COG4962         173 RCNILISGGTGSGKTTLLNALSGFID  198 (355)
T ss_pred             ceeEEEeCCCCCCHHHHHHHHHhcCC
Confidence            36899999999999999999997653

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=97.18  E-value=0.0004  Score=53.73  Aligned_cols=28  Identities=25%  Similarity=0.392  Sum_probs=23.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .+.-.++|+|++|+|||||++.|.|...
T Consensus        26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~   53 (214)
T TIGR02673        26 RKGEFLFLTGPSGAGKTTLLKLLYGALT   53 (214)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3445799999999999999999998753

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.18  E-value=0.00039  Score=53.44  Aligned_cols=27  Identities=26%  Similarity=0.441  Sum_probs=23.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      +.-.++|+|++|+|||||++.|.|...
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   51 (205)
T cd03226          25 AGEIIALTGKNGAGKTTLAKILAGLIK   51 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            445799999999999999999998753

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=97.18  E-value=0.00042  Score=53.70  Aligned_cols=26  Identities=19%  Similarity=0.397  Sum_probs=23.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .-.++|+|++|+|||||++.|.|...
T Consensus        13 Ge~~~l~G~NGsGKSTLlk~i~Gl~~   38 (213)
T PRK15177         13 HEHIGILAAPGSGKTTLTRLLCGLDA   38 (213)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCcc
Confidence            45789999999999999999998753

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=97.17  E-value=0.0026  Score=49.86  Aligned_cols=28  Identities=29%  Similarity=0.456  Sum_probs=23.8

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      ..+..++++.|..|+||||++++++...
T Consensus        49 G~pannvLL~G~rGtGKSSlVkall~~y   76 (249)
T PF05673_consen   49 GLPANNVLLWGARGTGKSSLVKALLNEY   76 (249)
T ss_pred             CCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence            3456789999999999999999999544

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=97.17  E-value=0.01  Score=45.44  Aligned_cols=21  Identities=33%  Similarity=0.528  Sum_probs=19.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~   40 (225)
                      .+++|.|++|+|||||++.|.
T Consensus        29 ~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          29 RVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             eEEEEECCCCCChHHHHHHHH
Confidence            469999999999999999977

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=97.17  E-value=0.00034  Score=54.42  Aligned_cols=27  Identities=33%  Similarity=0.405  Sum_probs=23.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      +.-.++|+|++|+|||||++.|.|...
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~   55 (220)
T cd03293          29 EGEFVALVGPSGCGKSTLLRIIAGLER   55 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345689999999999999999998753

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.17  E-value=0.019  Score=49.88  Aligned_cols=91  Identities=13%  Similarity=0.118  Sum_probs=49.3

Q ss_pred             cEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEee
Q 036158          105 HAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFD  184 (225)
Q Consensus       105 ~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (225)
                      -.+|||-|....+-.++.+.++.+...+-.....|+++++|-+-.....    ..+     ..+...+-+.++...+.|+
T Consensus       195 ~~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~n----nq~-----rlf~~d~q~~~ri~~IsFN  265 (634)
T KOG1970|consen  195 KKLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDSLSNGNN----NQD-----RLFPKDIQEEPRISNISFN  265 (634)
T ss_pred             ceEEEeeccchhhhhhhHHHHHHHHHHHHhcCCCcEEEEEeccccCCCc----chh-----hhchhhhhhccCcceEeec
Confidence            3468887776433332444444333344444557899999865533221    111     2223444477888888888


Q ss_pred             CCCccccccHHHHHHHHHHHHHHHHH
Q 036158          185 NKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       185 ~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      +..+      .-+...+..|......
T Consensus       266 PIa~------T~MKK~L~ric~~e~~  285 (634)
T KOG1970|consen  266 PIAP------TIMKKFLKRICRIEAN  285 (634)
T ss_pred             CCcH------HHHHHHHHHHHHHhcc
Confidence            8765      3455555555544333

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.17  E-value=0.00044  Score=47.26  Aligned_cols=23  Identities=26%  Similarity=0.572  Sum_probs=20.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHh
Q 036158           18 GERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      +.-.++++|++|+|||||++.+.
T Consensus        14 ~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          14 GKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CCEEEEEEcCCCCCHHHHHHHhh
Confidence            34668999999999999999986

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.16  E-value=0.00039  Score=55.03  Aligned_cols=27  Identities=22%  Similarity=0.297  Sum_probs=22.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      +.-.++++|++|||||||+++|.|.-.
T Consensus        27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~   53 (258)
T COG1120          27 KGEITGILGPNGSGKSTLLKCLAGLLK   53 (258)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            346688999999999999999998543

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=97.15  E-value=0.00036  Score=53.62  Aligned_cols=27  Identities=26%  Similarity=0.320  Sum_probs=23.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      +.-.++|+|++|+|||||++.|.|...
T Consensus        23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   49 (206)
T TIGR03608        23 KGKMYAIIGESGSGKSTLLNIIGLLEK   49 (206)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            345689999999999999999998753

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.15  E-value=0.0004  Score=53.81  Aligned_cols=28  Identities=36%  Similarity=0.495  Sum_probs=23.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .+.-.++|+|++|+|||||++.|.|...
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   54 (216)
T TIGR00960        27 TKGEMVFLVGHSGAGKSTFLKLILGIEK   54 (216)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3446789999999999999999998753

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=97.15  E-value=0.00036  Score=53.95  Aligned_cols=27  Identities=30%  Similarity=0.390  Sum_probs=23.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      +.-.++|+|++|+|||||++.|.|...
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03259          25 PGEFLALLGPSGCGKTTLLRLIAGLER   51 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            445699999999999999999998753

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.15  E-value=0.0034  Score=41.47  Aligned_cols=68  Identities=22%  Similarity=0.245  Sum_probs=40.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcC
Q 036158           22 LVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTK  101 (225)
Q Consensus        22 i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~  101 (225)
                      +++.|..|+||||+...+...-..   .   +.    ..  .-+ +  .+.++|+|+..+.....          .....
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~---~---g~----~v--~~~-~--d~iivD~~~~~~~~~~~----------~~~~~   56 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAK---R---GK----RV--LLI-D--DYVLIDTPPGLGLLVLL----------CLLAL   56 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH---C---CC----eE--EEE-C--CEEEEeCCCCccchhhh----------hhhhh
Confidence            678899999999999887643311   0   00    00  111 1  57899999865431000          01233


Q ss_pred             CCccEEEEEEeCC
Q 036158          102 DGIHAVLVVFSVR  114 (225)
Q Consensus       102 ~~~~~ii~v~~~~  114 (225)
                      ..+|.++++++.+
T Consensus        57 ~~~~~vi~v~~~~   69 (99)
T cd01983          57 LAADLVIIVTTPE   69 (99)
T ss_pred             hhCCEEEEecCCc
Confidence            3568888888776

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=97.15  E-value=0.00037  Score=53.78  Aligned_cols=27  Identities=33%  Similarity=0.422  Sum_probs=23.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      +.-.++|+|++|+|||||++.|.|...
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (210)
T cd03269          25 KGEIFGLLGPNGAGKTTTIRMILGIIL   51 (210)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            445689999999999999999998753

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=97.14  E-value=0.00037  Score=53.90  Aligned_cols=27  Identities=30%  Similarity=0.395  Sum_probs=23.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      +.-.++|+|++|+|||||++.|.|...
T Consensus        26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~   52 (214)
T cd03292          26 AGEFVFLVGPSGAGKSTLLKLIYKEEL   52 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            445789999999999999999998753

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.14  E-value=0.0036  Score=44.48  Aligned_cols=25  Identities=36%  Similarity=0.590  Sum_probs=21.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      ...++++|++|+|||++++.+...-
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4579999999999999999998544

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK07261 topology modulation protein; Provisional

Probab=97.13  E-value=0.00037  Score=52.12  Aligned_cols=23  Identities=26%  Similarity=0.524  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCC
Q 036158           20 RNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      .+|+|+|.+|+|||||...|...
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            37999999999999999988643

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.13  E-value=0.0004  Score=52.60  Aligned_cols=23  Identities=22%  Similarity=0.434  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCc
Q 036158           21 NLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      .|+|+|++|+||||+++.|.+..
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            58899999999999999997654

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.13  E-value=0.00055  Score=51.90  Aligned_cols=26  Identities=19%  Similarity=0.428  Sum_probs=22.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      +..-|+|+|++|+|||||++.|+...
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence            44679999999999999999998764

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=97.12  E-value=0.00039  Score=54.92  Aligned_cols=28  Identities=25%  Similarity=0.316  Sum_probs=23.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .+.-.++|+|++|+|||||++.|.|...
T Consensus        26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   53 (243)
T TIGR02315        26 NPGEFVAIIGPSGAGKSTLLRCINRLVE   53 (243)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            3445799999999999999999998753

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=97.12  E-value=0.00049  Score=53.50  Aligned_cols=28  Identities=29%  Similarity=0.501  Sum_probs=24.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .+.-.++|+|++|+|||||++.|.|...
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   51 (222)
T cd03224          24 PEGEIVALLGRNGAGKTTLLKTIMGLLP   51 (222)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3456799999999999999999998753

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=97.11  E-value=0.00051  Score=53.89  Aligned_cols=28  Identities=29%  Similarity=0.414  Sum_probs=24.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .+.-.++|+|++|+|||||++.|.|...
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   56 (233)
T cd03258          29 PKGEIFGIIGRSGAGKSTLIRCINGLER   56 (233)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3456799999999999999999998764

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=97.11  E-value=0.00051  Score=53.13  Aligned_cols=28  Identities=36%  Similarity=0.482  Sum_probs=23.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .+.-.++|+|++|+|||||++.|.|...
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   50 (213)
T cd03235          23 KPGEFLAIVGPNGAGKSTLLKAILGLLK   50 (213)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            3445799999999999999999998753

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=97.11  E-value=0.00051  Score=53.83  Aligned_cols=27  Identities=30%  Similarity=0.369  Sum_probs=23.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      +.-.++|+|++|+|||||++.|.|...
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   51 (232)
T cd03218          25 QGEIVGLLGPNGAGKTTTFYMIVGLVK   51 (232)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            445799999999999999999998753

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.11  E-value=0.00043  Score=53.40  Aligned_cols=26  Identities=23%  Similarity=0.413  Sum_probs=22.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      .+...|+|.|++|||||||.+.|.+.
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            45689999999999999999998864

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.11  E-value=0.00039  Score=53.87  Aligned_cols=25  Identities=28%  Similarity=0.449  Sum_probs=21.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      .=.|+++|++|+|||||+++|.+.-
T Consensus        30 GE~VaiIG~SGaGKSTLLR~lngl~   54 (258)
T COG3638          30 GEMVAIIGPSGAGKSTLLRSLNGLV   54 (258)
T ss_pred             CcEEEEECCCCCcHHHHHHHHhccc
Confidence            3468999999999999999998843

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=97.10  E-value=0.00053  Score=53.52  Aligned_cols=28  Identities=43%  Similarity=0.583  Sum_probs=24.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .+.-.++|+|++|+|||||++.|.|...
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   56 (228)
T cd03257          29 KKGETLGLVGESGSGKSTLARAILGLLK   56 (228)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3456799999999999999999998753

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=97.10  E-value=0.00042  Score=57.48  Aligned_cols=26  Identities=27%  Similarity=0.609  Sum_probs=23.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      ...+|+|.|++|||||||+|+|++.-
T Consensus       161 ~~~nilI~G~tGSGKTTll~aLl~~i  186 (344)
T PRK13851        161 GRLTMLLCGPTGSGKTTMSKTLISAI  186 (344)
T ss_pred             cCCeEEEECCCCccHHHHHHHHHccc
Confidence            45889999999999999999999754

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.10  E-value=0.00044  Score=52.87  Aligned_cols=27  Identities=22%  Similarity=0.316  Sum_probs=21.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      .+.-..+++|++|||||||+++|-+-.
T Consensus        31 ~~~~VTAlIGPSGcGKST~LR~lNRmn   57 (253)
T COG1117          31 PKNKVTALIGPSGCGKSTLLRCLNRMN   57 (253)
T ss_pred             cCCceEEEECCCCcCHHHHHHHHHhhc
Confidence            345678999999999999998876443

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.10  E-value=0.0025  Score=61.22  Aligned_cols=28  Identities=32%  Similarity=0.484  Sum_probs=24.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAF   45 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~   45 (225)
                      ..-.++|+|++|+|||||+.+|+|+-..
T Consensus       546 ~G~lvaVvG~vGsGKSSLL~AiLGEm~~  573 (1381)
T KOG0054|consen  546 KGQLVAVVGPVGSGKSSLLSAILGEMPK  573 (1381)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCccc
Confidence            3456899999999999999999998653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	225
3lxx_A	239	Crystal Structure Of Human Gtpase Imap Family Membe		9e-29
3v70_A	247	Crystal Structure Of Human Gtpase Imap Family Membe		6e-24
2xtm_A	234	Crystal Structure Of Gdp-Bound Human Gimap2, Amino		1e-22
3p1j_A	209	Crystal Structure Of Human Gtpase Imap Family Membe		2e-22
2xto_A	240	Crystal Structure Of Gdp-Bound Human Gimap2, Amino		5e-22
2xtp_A	260	Crystal Structure Of Nucleotide-Free Human Gimap2,		3e-21

>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4 Length = 239

Iteration: 1
 Score =  123 bits (308), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 71/207 (34%), Positives = 117/207 (56%), Gaps = 6/207 (2%)
Query: 15  PSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVI 74
           P N +  +VLVG+TG GKSAT NSILG++ F S   +  +TK CE + +  K+ ++V V+
Sbjct: 25  PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 83
Query: 75  DTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK 134
           DTPG+FD+   +   SKEI++CI +T  G HA+L+V  +  R++EEE  A   +   FG+
Sbjct: 84  DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKXFGE 142
Query: 135 KISDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRT 194
           +   + I++F               YL RE P+ ++++  +  +R    +NK    A++ 
Sbjct: 143 RARSFXILIF--TRKDDLGDTNLHDYL-REAPEDIQDLXDIFGDRYCALNNKATG-AEQE 198
Query: 195 EQVGKLLSLVNSVIVQNGGQPYTDEIF 221
            Q  +LL L+  V+ +N    YT+  +
Sbjct: 199 AQRAQLLGLIQRVVRENKEGCYTNRXY 225

>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1 Length = 247

Iteration: 1
 Score =  107 bits (266), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 113/204 (55%), Gaps = 8/204 (3%)
Query: 20  RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL 79
           R L+LVGRTG GKSAT NSILG+R F S+ G++ VT+ C    +   D   V V+DTP +
Sbjct: 22  RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTG-SRRWDKCHVEVVDTPDI 80
Query: 80  FDSS-ADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISD 138
           F S  + ++   +E   C  ++  G HA+L+V  +  RF+ ++  A+  +  +FG+ +  
Sbjct: 81  FSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQL-GRFTAQDQQAVRQVRDMFGEDVLK 139
Query: 139 YMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTE-QV 197
           +M++VF               Y+     + L+E++  C  R   FDN+   T +  E QV
Sbjct: 140 WMVIVF--TRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRA--TGREQEAQV 195
Query: 198 GKLLSLVNSVIVQNGGQPYTDEIF 221
            +LL +V  +++++ G  Y++E++
Sbjct: 196 VQLLGMVEGLVLEHKGAHYSNEVY 219

>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 1-234 Length = 234

Iteration: 1
 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 113/213 (53%), Gaps = 5/213 (2%)
Query: 10  SKPTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ 69
           +K    S  E  ++LVG+TG GKSA  NSIL K+AF+SK GS  +TKTC   +    + +
Sbjct: 13  AKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNRE 72
Query: 70  VVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILE 129
           +V +IDTP +F      E + KE+ +C  ++  G H +L+V  +  R++ ++  A   ++
Sbjct: 73  IV-IIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVK 130
Query: 130 SLFGKKISDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNKTKD 189
            +FG+    + IV+F               Y+     K L +++  C  R   F+N+  +
Sbjct: 131 EIFGEDAMGHTIVLF--THKEDLNGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRA-E 187
Query: 190 TAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFA 222
            + + +QV +L+  +  ++++  G  YT+ +++
Sbjct: 188 GSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYS 220

>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In The Nucleotide-Free State Length = 209

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 111/207 (53%), Gaps = 5/207 (2%)
Query: 16  SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVID 75
           S  E  ++LVG+TG GKSA  NSIL K+AF+SK GS  +TKTC   +    + ++V +ID
Sbjct: 2   SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IID 60
Query: 76  TPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK 135
           TP +F      E + KE+ +C  ++  G H +L+V  +  R++ ++  A   ++ +FG+ 
Sbjct: 61  TPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGED 119
Query: 136 ISDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTE 195
              + IV+F               Y+     K L +++  C  R   F+N+  + + + +
Sbjct: 120 AMGHTIVLF--THKEDLNGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRA-EGSNQDD 176
Query: 196 QVGKLLSLVNSVIVQNGGQPYTDEIFA 222
           QV +L+  +  ++++  G  YT+ +++
Sbjct: 177 QVKELMDCIEDLLMEKNGDHYTNGLYS 203

>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 21-260 Length = 240

Iteration: 1
 Score =  100 bits (250), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 110/204 (53%), Gaps = 5/204 (2%)
Query: 19  ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPG 78
           E  ++LVG+TG GKSA  NSIL K+AF+SK GS  +TKTC   +    + ++V +IDTP 
Sbjct: 2   ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPD 60
Query: 79  LFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISD 138
           +F      E + KE+ +C  ++  G H +L+V  +  R++ ++  A   ++ +FG+    
Sbjct: 61  MFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVKEIFGEDAMG 119
Query: 139 YMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVG 198
           + IV+F               Y+     K L +++  C  R   F+N+  + + + +QV 
Sbjct: 120 HTIVLF--THKEDLNGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRA-EGSNQDDQVK 176
Query: 199 KLLSLVNSVIVQNGGQPYTDEIFA 222
           +L+  +  ++++  G  YT+ +++
Sbjct: 177 ELMDCIEDLLMEKNGDHYTNGLYS 200

>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino Acid Residues 1-260 Length = 260

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 110/213 (51%), Gaps = 5/213 (2%)
Query: 10  SKPTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ 69
           +K    S  E  ++LVG+TG GKSA  NSIL K+AF+SK GS  +TKTC   +    + +
Sbjct: 13  AKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNRE 72
Query: 70  VVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILE 129
           +V +IDTP  F      E + KE+ +C  ++  G H +L+V  +  R++ ++  A   ++
Sbjct: 73  IV-IIDTPDXFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQRVK 130
Query: 130 SLFGKKISDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLKEILQLCDNRCVLFDNKTKD 189
            +FG+    + IV+F               Y      K L +++  C  R   F+N+  +
Sbjct: 131 EIFGEDAXGHTIVLF--THKEDLNGGSLXDYXHDSDNKALSKLVAACGGRICAFNNRA-E 187
Query: 190 TAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFA 222
            + + +QV +L   +  ++ +  G  YT+ +++
Sbjct: 188 GSNQDDQVKELXDCIEDLLXEKNGDHYTNGLYS 220

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	225
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	9e-70
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	2e-67
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	3e-66
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	2e-61
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	9e-54
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	4e-05
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	3e-04
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	4e-04

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A Length = 260

 Score =  213 bits (543), Expect = 9e-70
 Identities = 64/219 (29%), Positives = 120/219 (54%), Gaps = 5/219 (2%)

Query: 7   DADSKPTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK 66
              +K    S  E  ++LVG+TG GKSA  NSIL K+AF+SK GS  +TKTC   +    
Sbjct: 10  GPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW- 68

Query: 67  DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIH 126
             + + +IDTP +F      E + KE+ +C  ++  G H +L+V  +  R++ ++  A  
Sbjct: 69  GNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQAAQ 127

Query: 127 ILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK 186
            ++ +FG+    + IV+FT  ++L     +L DY+     K L +++  C  R   F+N+
Sbjct: 128 RVKEIFGEDAMGHTIVLFTHKEDLN--GGSLMDYMHDSDNKALSKLVAACGGRICAFNNR 185

Query: 187 TKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 225
            + + +  +QV +L+  +  ++++  G  YT+ +++ ++
Sbjct: 186 AEGSNQD-DQVKELMDCIEDLLMEKNGDHYTNGLYSLIQ 223

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239

 Score =  206 bits (525), Expect = 2e-67
 Identities = 75/212 (35%), Positives = 123/212 (58%), Gaps = 6/212 (2%)

Query: 14  SPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNV 73
            P N +  +VLVG+TG GKSAT NSILG++ F S   +  +TK CE + +       + V
Sbjct: 24  EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVV 82

Query: 74  IDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFG 133
           +DTPG+FD+   +   SKEI++CI +T  G HA+L+V  +  R++EEE  A   +  +FG
Sbjct: 83  VDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKMFG 141

Query: 134 KKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKR 193
           ++   +MI++FT  D+L   D  L DYL RE P+ +++++ +  +R    +NK     + 
Sbjct: 142 ERARSFMILIFTRKDDLG--DTNLHDYL-REAPEDIQDLMDIFGDRYCALNNKATGAEQE 198

Query: 194 TEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK 225
             Q  +LL L+  V+ +N    YT+ ++   +
Sbjct: 199 A-QRAQLLGLIQRVVRENKEGCYTNRMYQRAE 229

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score =  191 bits (488), Expect = 2e-61
 Identities = 41/239 (17%), Positives = 84/239 (35%), Gaps = 22/239 (9%)

Query: 4   RVIDADSKPTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRT 63
           ++I+   K          ++++G+ G GKS+T NS++G++  +     +   +   + RT
Sbjct: 21  KLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRT 80

Query: 64  MLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGA 123
           M   G  +N+IDTPGL ++   +    + I   +      +   +    V     E +  
Sbjct: 81  M--GGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVY-AVDELDKQ 137

Query: 124 AIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLF 183
            +  +   FGK+I    ++V T       ++ + E +  +     LK I      R   F
Sbjct: 138 VVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEF 197

Query: 184 DNKTKDTA-------------------KRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAE 223
           ++                              +  L+  +  V        + D    E
Sbjct: 198 EDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKAITDVATNQRKAIHVDAAALE 256

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score =  172 bits (438), Expect = 9e-54
 Identities = 37/218 (16%), Positives = 80/218 (36%), Gaps = 22/218 (10%)

Query: 3   GRVIDADSKPTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQR 62
            ++++              ++++G+ G GKS+T NSI+G+R        S   +   + R
Sbjct: 23  TKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSR 82

Query: 63  TMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSV-RNRFSEEE 121
           +    G  +N+IDTPGL +    ++     I   +      I  +L V  +   R    +
Sbjct: 83  SR--AGFTLNIIDTPGLIEGGYINDMALNIIKSFL--LDKTIDVLLYVDRLDAYRVDNLD 138

Query: 122 GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCV 181
                 +   FGK I +  IV  T       +    +++   +  + L ++++   +   
Sbjct: 139 KLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFF-SKRSEALLQVVRSGASLKK 197

Query: 182 LFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDE 219
                                    V+++N G+   ++
Sbjct: 198 DAQASDIPV----------------VLIENSGRCNKND 219

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 56.6 bits (136), Expect = 1e-09
 Identities = 24/142 (16%), Positives = 48/142 (33%), Gaps = 14/142 (9%)

Query: 15  PSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTC-EMQRTMLKDGQVVNV 73
             +   N+ + G TG+GKS+  N++ G    +  A  +GV +   E       +   V  
Sbjct: 65  IDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVF 124

Query: 74  IDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFG 133
            D PG+  ++   +   +++                +     RF + +      +     
Sbjct: 125 WDLPGIGSTNFPPDTYLEKMKF--------YEYDFFIIISATRFKKNDIDIAKAISM-MK 175

Query: 134 KKISDYMIVVFTGGDELEDNDE 155
           K+       V T  D    N+ 
Sbjct: 176 KEF----YFVRTKVDSDITNEA 193

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 8e-07
 Identities = 32/282 (11%), Positives = 72/282 (25%), Gaps = 83/282 (29%)

Query: 19  ERNLVLVGRTGNGKSATANSILGKRAFKSKAG------SSGVTKTCEMQRTMLK------ 66
            +N+++ G  G+GK+  A  +      + K        +     + E    ML+      
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 67  DGQVVNVID----TPGLFDSSAD--SEFV----------------SKEIVK-----C--I 97
           D    +  D          S        +                + +        C  +
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269

Query: 98  GMTKD-GIHAVLVVFSVRNRFSEEEGAAIHILES--LFGK--------------KISDYM 140
             T+   +   L   +  +   +     +   E   L  K                +   
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329

Query: 141 IVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC-------DNR-----CVLFDNKTK 188
           + +    + + D   T +++    C K L  I++         + R       +F     
Sbjct: 330 LSII--AESIRDGLATWDNWKHVNCDK-LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386

Query: 189 DTAKR---------TEQVGKLLS-LVNSVIVQNGGQPYTDEI 220
                            V  +++ L    +V+   +  T  I
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 33/177 (18%), Positives = 57/177 (32%), Gaps = 47/177 (26%)

Query: 55  TKTCEMQRT-----------MLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDG 103
            +T E Q              + +    +V D P           +SKE +  I M+KD 
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMP--------KSILSKEEIDHIIMSKDA 60

Query: 104 IHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR 163
           +   L +F                L S   +++    +      + L  N + L   +  
Sbjct: 61  VSGTLRLFW--------------TLLS-KQEEMVQKFV-----EEVLRINYKFLMSPIKT 100

Query: 164 ECPKPLKEILQLCDNRCVLF-DNK--TKDTAKRTEQVGK----LLSL-VNSVIVQNG 212
           E  +P        + R  L+ DN+   K    R +   K    LL L     ++ +G
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427

 Score = 42.8 bits (100), Expect = 4e-05
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 21  NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQV---VNVIDTP 77
           N++ VG TG GKS   +++   +     A  +      +     L++  V   + ++ T 
Sbjct: 44  NILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTV 103

Query: 78  GLFDSSADSEFVSKEIVKCI 97
           G F    + E   K IV+ I
Sbjct: 104 G-FGDQINKEDSYKPIVEFI 122

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 Length = 282

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 28/133 (21%), Positives = 48/133 (36%), Gaps = 21/133 (15%)

Query: 31  GKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVS 90
           GKS   N +  K   K+     G+T +   Q   +     + ++DTPG+     + E V 
Sbjct: 132 GKSTLINRLAKKNIAKT-GDRPGITTS--QQWVKVGKE--LELLDTPGILWPKFEDELVG 186

Query: 91  KEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDEL 150
             +    G  KD I                +  A+  L  L  ++     +    G DE+
Sbjct: 187 LRLAVT-GAIKDSI-------------INLQDVAVFGLRFL--EEHYPERLKERYGLDEI 230

Query: 151 EDNDETLEDYLGR 163
            ++   L D +G 
Sbjct: 231 PEDIAELFDAIGE 243

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* Length = 274

 Score = 39.4 bits (91), Expect = 4e-04
 Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 8/84 (9%)

Query: 21 NLVLVGRTGNGKSATANSILGKRAFKSKAG--SSGVTKTCEMQRTM--LKDGQV---VNV 73
           L++VG +G GKS   NS+     +  +    S  + KT +++++   +K+G V   + +
Sbjct: 10 TLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTI 69

Query: 74 IDTPGLFDSSADSEFVSKEIVKCI 97
          +DTPG F  + D+    + ++  I
Sbjct: 70 VDTPG-FGDAVDNSNCWQPVIDYI 92

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	225
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	100.0
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	100.0
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.97
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.9
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.89
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.89
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.88
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.87
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.87
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.87
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.84
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.84
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.84
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.83
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.83
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.83
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.82
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.82
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.82
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.82
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.82
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.82
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.81
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.81
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.81
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.81
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.81
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.81
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.81
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.81
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.81
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.8
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.8
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.8
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.8
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.8
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.8
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.8
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.8
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.8
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.8
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.8
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.8
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.8
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.8
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.79
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.79
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.79
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.79
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.79
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.79
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.79
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.79
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.79
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.79
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.79
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.79
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.79
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.79
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.79
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.79
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.79
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.79
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.79
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.79
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.79
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.78
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.78
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.78
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.78
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.78
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.78
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.78
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.78
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.78
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.78
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.78
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.78
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.77
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.77
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.77
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.77
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.77
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.77
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.77
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.77
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.77
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.77
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.77
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.77
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.77
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.77
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.77
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.77
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.77
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.76
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.76
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.76
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.76
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.76
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.76
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.76
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.76
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.76
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.75
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.75
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.75
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.75
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.75
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.75
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.75
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.75
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.75
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.75
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.75
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.74
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.74
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.74
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.74
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.74
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.74
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.74
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.74
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.73
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.73
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.73
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.73
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.73
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.73
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.72
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.72
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.72
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.72
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.72
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.72
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.72
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.72
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.71
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.71
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.71
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.71
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.71
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.71
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.71
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.7
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.7
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.7
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.7
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.7
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.69
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.68
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.68
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.67
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.67
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.67
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.66
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.48
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.66
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.66
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.65
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.64
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.64
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.64
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.64
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.64
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.64
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.63
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.63
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.63
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.63
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.62
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.62
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.61
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.61
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.59
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.59
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.59
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.58
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.58
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.58
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.58
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.55
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.54
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.54
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.54
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.53
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.5
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.5
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.49
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.45
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.45
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.44
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.42
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.4
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.4
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.4
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.38
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.3
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.29
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.26
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.22
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.22
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.22
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.22
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.18
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	99.14
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.12
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.11
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	99.11
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.08
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.07
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	98.92
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.87
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.8
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.74
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	98.61
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.6
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	98.57
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.53
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	98.47
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.4
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.4
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.36
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.32
2xxa_A	433	Signal recognition particle protein; protein trans	98.31
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	98.25
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.23
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.21
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	98.13
2og2_A	359	Putative signal recognition particle receptor; nuc	98.09
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.09
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.08
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.08
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.04
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	98.04
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.01
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.99
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.94
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.77
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.66
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.58
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.56
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	97.54
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.52
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.47
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	97.46
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	97.45
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.44
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.4
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.39
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.38
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.37
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.36
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.36
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.36
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.35
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.34
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	97.34
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.34
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.33
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.32
1g6h_A	257	High-affinity branched-chain amino acid transport	97.32
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.32
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.32
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.32
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.31
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.3
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.29
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.29
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.28
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.28
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.27
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.27
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.27
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.27
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.26
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.26
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.26
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.25
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.25
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.25
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.24
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.23
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.22
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.22
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.21
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.16
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.15
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.14
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.1
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.1
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.08
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.07
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.07
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.07
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.07
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.07
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.06
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.05
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.04
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.04
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.04
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.04
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.03
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.02
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.02
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.01
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	97.01
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.0
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.99
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.98
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.97
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.95
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.95
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.94
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.92
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.92
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.91
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.9
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.89
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.88
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.87
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.87
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	96.86
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.86
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.86
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.85
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.84
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.83
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.83
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.82
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.82
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.81
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.79
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.79
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.79
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.77
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.76
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.75
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.73
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.72
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.72
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.71
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.71
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.7
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.68
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.67
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.67
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.66
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.65
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.63
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.63
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.62
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.62
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.61
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.6
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.59
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.59
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.59
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.57
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.56
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.56
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.54
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.51
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.51
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.51
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.51
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.5
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.49
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.49
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.49
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.48
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.47
3end_A	307	Light-independent protochlorophyllide reductase ir	96.47
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.47
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.46
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.45
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.45
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.45
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.45
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.45
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.44
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.43
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.42
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.42
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.42
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.41
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.4
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.4
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.39
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.38
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.38
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.37
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.35
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.34
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.34
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.34
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.34
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.32
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.31
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.3
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.28
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.28
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.27
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.27
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.26
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.25
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.25
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.25
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.24
1via_A	175	Shikimate kinase; structural genomics, transferase	96.22
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.21
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.21
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.21
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.18
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.18
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.17
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.16
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.16
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.15
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.15
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.14
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.13
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.13
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.13
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.12
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.12
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.11
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	96.1
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.1
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.09
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.09
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.07
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.06
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.04
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.02
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.02
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	95.98
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.96
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	95.95
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	95.9
2cvh_A	220	DNA repair and recombination protein RADB; filamen	95.9
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	95.88
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	95.88
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	95.86
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	95.86
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.83
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.83
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	95.81
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.79
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	95.76
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	95.73
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.73
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.73
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.71
3bos_A	242	Putative DNA replication factor; P-loop containing	95.71
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.69
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.65
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.65
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.65
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	95.64
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	95.62
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	95.59
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.56
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.54
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.5
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.48
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.46
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.45
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.43
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	95.43
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.41
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.41
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	95.41
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	95.39
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.39
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.35
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.34
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.32
3co5_A	143	Putative two-component system transcriptional RES	95.32
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.3
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	95.29
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.29
1e69_A	322	Chromosome segregation SMC protein; structural mai	95.29
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.28
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	95.26
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.26
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.22
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.18
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	95.18
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	95.17
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	95.17
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.1
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	95.1
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	95.08
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.07
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	95.04
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.01
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	94.99
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	94.99

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=1.4e-32  Score=215.77  Aligned_cols=204  Identities=36%  Similarity=0.657  Sum_probs=149.3

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ....++|+|+|.+|+|||||+|+|++...........++|..+....+.+ .+..+.||||||+.+......+..+.+..
T Consensus        26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~~  104 (239)
T 3lxx_A           26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVVVDTPGIFDTEVPNAETSKEIIR  104 (239)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CCceEEEEECCCccCCCCCHHHHHHHHHH
Confidence            45679999999999999999999999887555443446788888888888 88899999999999887777778888888


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      ++..+.+++|++|+|+|+. +++..+...+..+.+.++.....|+++|+||+|.....  .+++++.. ....++++++.
T Consensus       105 ~~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~i~~-~~~~l~~l~~~  180 (239)
T 3lxx_A          105 CILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDT--NLHDYLRE-APEDIQDLMDI  180 (239)
T ss_dssp             HHHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC---------------CHHHHHHHHH
T ss_pred             HHHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcc--cHHHHHHh-chHHHHHHHHH
Confidence            8888889999999999997 77778888888888888776667999999999987664  67777665 34568999999


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCCCHHHHhhcC
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAELK  225 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~~~~~~~~~~  225 (225)
                      |+.+++.|++... +++...++.+|++.+.+++.++++.+|++++|++++
T Consensus       181 ~~~~~~~~~~~~~-~~~~~~~v~~ll~~i~~~~~~~~g~~~~~~~~~~~e  229 (239)
T 3lxx_A          181 FGDRYCALNNKAT-GAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRAE  229 (239)
T ss_dssp             HSSSEEECCTTCC-HHHHHHHHHHHHHHHHHHHHHCTTSCC---------
T ss_pred             cCCEEEEEECCCC-ccccHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Confidence            9999999988753 446678999999999999999999999999998763

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.97  E-value=3.2e-28  Score=193.14  Aligned_cols=204  Identities=31%  Similarity=0.561  Sum_probs=164.4

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           15 PSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      +..+.++|+|+|++|+|||||+|+|++...+.....+.++|..+....+.+ .+..+.||||||+.++........+.+.
T Consensus        18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~iiDTpG~~~~~~~~~~~~~~i~   96 (260)
T 2xtp_A           18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTPDMFSWKDHCEALYKEVQ   96 (260)
T ss_dssp             ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CCCEEEEEECcCCCCCCCCHHHHHHHHH
Confidence            445679999999999999999999999886655444444677777777777 7889999999999987766666666777


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEe-cCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFT-GGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~-k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                      ..+..+.+.+|++|+|+|+. +++..+...++++.+.++.+...|+++|+| |+|....   .+..++.......+++++
T Consensus        97 ~~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~  172 (260)
T 2xtp_A           97 RCYLLSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG---SLMDYMHDSDNKALSKLV  172 (260)
T ss_dssp             HHHHHHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC---CHHHHHHHCCCHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc---cHHHHHHhcchHHHHHHH
Confidence            77777788999999999998 588888888899999887765578888888 9998743   566666654556678899


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCCCHHHHhhc
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDEIFAEL  224 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~~~~~~~~~  224 (225)
                      +.|+.++..|.+ .+.||..+.++++|++.|.+++.++.+.+|.++++.+.
T Consensus       173 ~~~~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~~  222 (260)
T 2xtp_A          173 AACGGRICAFNN-RAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYSLI  222 (260)
T ss_dssp             HHTTTCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHC
T ss_pred             HHhCCeEEEecC-cccccccHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHH
Confidence            999988876766 78889999999999999999999988778887777553

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.90  E-value=1.7e-22  Score=160.47  Aligned_cols=191  Identities=19%  Similarity=0.268  Sum_probs=135.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .+.++|+++|.+|+|||||+|+|++...... ....++|.......+.+ ++..+.||||||+.++....+...+.+.++
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~-~~~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRV-SPFQAEGLRPVMVSRTM-GGFTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCC-CSSCC-CCCCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCccc-CCCCCcceeeEEEEEEE-CCeeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            4679999999999999999999999875433 23455666777777777 788999999999988766666666666665


Q ss_pred             HhhcCCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRN-RFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      +  ...++|++++|++++. +++..+..+++.+.+.++.+...|+++|+||+|.........++++.+ ....++++++.
T Consensus       112 l--~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~-~~~~l~~~i~~  188 (262)
T 3def_A          112 L--VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK-RSDSLLKTIRA  188 (262)
T ss_dssp             T--TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH-HHHHHHHHHHH
T ss_pred             H--hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh-hhHHHHHHHHH
Confidence            5  3457899999988763 466777789999999888776679999999999875554577777655 33446666666


Q ss_pred             cC-----------CcEEEeeCCCccccccHH----------HHHHHHHHHHHHHHHcCC
Q 036158          176 CD-----------NRCVLFDNKTKDTAKRTE----------QVGKLLSLVNSVIVQNGG  213 (225)
Q Consensus       176 ~~-----------~~~~~~~~~~~~~~~~~~----------~v~~l~~~i~~~~~~~~~  213 (225)
                      +.           .++.++.+..... .+..          -+..|+..|.+++.....
T Consensus       189 ~~~~~~~~~~~~~~pv~~ve~~~~~~-~n~~g~~~lp~~~~w~~~~~~~~~~~~~~~~~  246 (262)
T 3def_A          189 GSKMRKQEFEDSAIAVVYAENSGRCS-KNDKDEKALPNGEAWIPNLVKAITDVATNQRK  246 (262)
T ss_dssp             HHTCCHHHHHHHCCEEEECCCCTTCC-BCTTSCBBCTTSCBSCC-CHHHHHHHHTSCSC
T ss_pred             HhCccccccccccCCEEEEeCCCCCC-CCCCCCeECCCCCeeHHHHHHHHHHHHhCCCC
Confidence            54           3444454442221 1111          356777878777765443

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.89  E-value=1e-21  Score=156.59  Aligned_cols=200  Identities=20%  Similarity=0.297  Sum_probs=136.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ...++|+++|.+|+|||||+|+|++....... ...++|..+....+.. .+..+.||||||+.++..........+..+
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~  114 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSIS-PFQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSF  114 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCcceeeEEEEEee-CCeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence            45799999999999999999999988754332 2445565555556666 788999999999987654444444444443


Q ss_pred             HhhcCCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRN-RFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      +  ....+|+++||++++. +++..+..+++.+.+.++.+...|+++|+||+|..+.....++++..+ ....+++.++.
T Consensus       115 ~--~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~-~~~~l~~~~~~  191 (270)
T 1h65_A          115 L--LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK-RSEALLQVVRS  191 (270)
T ss_dssp             T--TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH-HHHHHHHHHHH
T ss_pred             h--hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHHH-HHHHHHHHHHH
Confidence            2  3457899999988763 577777788898988887665679999999999876544467776654 23334444432


Q ss_pred             c----------CCcEEEeeCCCcc--c----c---ccHHHHHHHHHHHHHHHHHcCCCCCC-HHHH
Q 036158          176 C----------DNRCVLFDNKTKD--T----A---KRTEQVGKLLSLVNSVIVQNGGQPYT-DEIF  221 (225)
Q Consensus       176 ~----------~~~~~~~~~~~~~--~----~---~~~~~v~~l~~~i~~~~~~~~~~~~~-~~~~  221 (225)
                      .          ..++.+..+....  .    .   .......+|++.|.+++...+..... +.+.
T Consensus       192 ~~~~~~~~~~~~~p~~~v~~~~~~~~~~~~~~v~~~~~~w~~~Ll~~l~~~~~~~~~~l~~d~~~~  257 (270)
T 1h65_A          192 GASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVDKNLI  257 (270)
T ss_dssp             HTTCCTTSGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTSSSCCEECCHHHH
T ss_pred             hhhhhhhhhhccCCEEEEeCCCcccccCCCceECCCCCCcHHHHHHHHHHHHhcCCCceecCHHHh
Confidence            1          1244444432110  0    0   11124669999999999999888765 3444

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.89  E-value=5.8e-22  Score=153.22  Aligned_cols=181  Identities=13%  Similarity=0.177  Sum_probs=120.4

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcH--HHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSE--FVSKEI   93 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~   93 (225)
                      ....++|+|+|.+|+|||||+|+|++..........+++|............+..+.||||||+.+......  +....+
T Consensus        26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  105 (223)
T 4dhe_A           26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL  105 (223)
T ss_dssp             CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence            345789999999999999999999998732233345566777666666533567999999999886543322  222222


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                      ..........+|++++|+|+.++++..+..+++++.+     ...|+++|+||+|+....  ........     +.+.+
T Consensus       106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~-----~~~p~i~v~nK~Dl~~~~--~~~~~~~~-----~~~~l  173 (223)
T 4dhe_A          106 LSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAP-----TGKPIHSLLTKCDKLTRQ--ESINALRA-----TQKSL  173 (223)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG-----GCCCEEEEEECGGGSCHH--HHHHHHHH-----HHHHH
T ss_pred             HHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh-----cCCCEEEEEeccccCChh--hHHHHHHH-----HHHHH
Confidence            2222233456899999999987788777777777655     237999999999987543  33333333     34444


Q ss_pred             HHc-----CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          174 QLC-----DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       174 ~~~-----~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                      ..+     ......+    ..|+.++.++++|++.|.+.+.+..
T Consensus       174 ~~~~~~~~~~~~~~~----~~SA~~g~gv~~l~~~l~~~~~~~~  213 (223)
T 4dhe_A          174 DAYRDAGYAGKLTVQ----LFSALKRTGLDDAHALIESWLRPAA  213 (223)
T ss_dssp             HHHHHHTCCSCEEEE----EEBTTTTBSHHHHHHHHHHHHC---
T ss_pred             HhhhhcccCCCCeEE----EeecCCCcCHHHHHHHHHHhcCccC
Confidence            432     2222222    3455677999999999999887654

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.88  E-value=4.4e-22  Score=161.51  Aligned_cols=178  Identities=14%  Similarity=0.250  Sum_probs=125.0

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHH
Q 036158           14 SPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKD-GQVVNVIDTPGLFDSSADSEFVSKE   92 (225)
Q Consensus        14 ~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~   92 (225)
                      ++..+...|+++|.+|+|||||+|+|++...... ...+++|+......... + +..+.||||||+.+.. ......+.
T Consensus         5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~-s~~~~tT~~~~~~~~~~-~~~~~i~lvDTPG~~~~~-~~~~l~~~   81 (308)
T 3iev_A            5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSII-SPKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYEPK-KSDVLGHS   81 (308)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCC-CSSSCCCCSCEEEEEEE-TTTEEEEEEECCCCCCCC-TTCHHHHH
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhCCCcccc-CCCCCceeeEEEEEEec-CCCCeEEEEECcCCCccc-cchhHHHH
Confidence            4456778999999999999999999999886543 33556677666666666 5 8899999999998754 22345555


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158           93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAA-IHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE  171 (225)
Q Consensus        93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~  171 (225)
                      +...+..+...+|++++|+|+.++.+..+... ++.+..     ...|+++|+||+|..... ....+..        ..
T Consensus        82 ~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-----~~~pvilV~NK~Dl~~~~-~~~~~~~--------~~  147 (308)
T 3iev_A           82 MVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-----LNKPVIVVINKIDKIGPA-KNVLPLI--------DE  147 (308)
T ss_dssp             HHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-----GCCCEEEEEECGGGSSSG-GGGHHHH--------HH
T ss_pred             HHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-----cCCCEEEEEECccCCCCH-HHHHHHH--------HH
Confidence            66666666678899999999987777777665 555443     247999999999987322 2333332        33


Q ss_pred             HHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          172 ILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                      +.+.++..    ....+.||.++.++++|++.|.+.+.+..
T Consensus       148 l~~~~~~~----~~i~~vSA~~g~gv~~L~~~l~~~l~~~~  184 (308)
T 3iev_A          148 IHKKHPEL----TEIVPISALKGANLDELVKTILKYLPEGE  184 (308)
T ss_dssp             HHHHCTTC----CCEEECBTTTTBSHHHHHHHHHHHSCBCC
T ss_pred             HHHhccCC----CeEEEEeCCCCCCHHHHHHHHHHhCccCC
Confidence            33444321    12234566778999999999999887643

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.87  E-value=1.4e-21  Score=157.93  Aligned_cols=168  Identities=17%  Similarity=0.156  Sum_probs=118.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      ...+|+++|.+|+|||||+|+|++....... ..+++|+......... ++..+.||||||+.+..   ..+.+.+....
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs-~~~~tTr~~i~~i~~~-~~~~l~l~DTpG~~~~~---~~l~~~~~~~~   80 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPIS-PRPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPM---DALGEFMDQEV   80 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCC-SSSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCC---SHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCceeeec-CCCCceeEEEEEEEEe-CCcEEEEecCccccchh---hHHHHHHHHHH
Confidence            4568999999999999999999998865432 2344555544444444 77899999999998643   23444566666


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCccc-HHHHhhhcCCchHHHHHHHc
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDET-LEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  176 (225)
                      ..++..+|++++|+|++++++..+..+++.+.+...   ..|+++|+||+|+....  . +.+..        +++   +
T Consensus        81 ~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~---~~p~ilV~NK~Dl~~~~--~~~~~~~--------~~~---~  144 (301)
T 1wf3_A           81 YEALADVNAVVWVVDLRHPPTPEDELVARALKPLVG---KVPILLVGNKLDAAKYP--EEAMKAY--------HEL---L  144 (301)
T ss_dssp             HHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTT---TSCEEEEEECGGGCSSH--HHHHHHH--------HHT---S
T ss_pred             HHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcC---CCCEEEEEECcccCCch--HHHHHHH--------HHh---c
Confidence            677889999999999987788777666666655321   37999999999986542  2 22221        111   1


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      +     +....+.||.++.++++|++.|.+.+.+.
T Consensus       145 ~-----~~~~~~iSA~~g~gv~~l~~~l~~~l~~~  174 (301)
T 1wf3_A          145 P-----EAEPRMLSALDERQVAELKADLLALMPEG  174 (301)
T ss_dssp             T-----TSEEEECCTTCHHHHHHHHHHHHTTCCBC
T ss_pred             C-----cCcEEEEeCCCCCCHHHHHHHHHHhcccC
Confidence            1     11234567788899999999998776543

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.87  E-value=1.7e-20  Score=141.64  Aligned_cols=173  Identities=16%  Similarity=0.234  Sum_probs=115.4

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcH--HHHHH
Q 036158           15 PSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSE--FVSKE   92 (225)
Q Consensus        15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~   92 (225)
                      +....++|+|+|.+|+|||||+|+|++.... ......+.|.......    .+..+.+|||||+........  +....
T Consensus        19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   93 (195)
T 3pqc_A           19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYL----VNSKYYFVDLPGYGYAKVSKKERMLWKR   93 (195)
T ss_dssp             CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEE----ETTTEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEE----ECCcEEEEECCCCccccCChhhHHHHHH
Confidence            3456789999999999999999999988732 2233444455444332    245789999999876543322  22223


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158           93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI  172 (225)
Q Consensus        93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (225)
                      +..........+|++++|+|+....+..+...++++...     ..|+++|+||+|+....  .......+     +++.
T Consensus        94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~~~--~~~~~~~~-----~~~~  161 (195)
T 3pqc_A           94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKVKMS--ERAKKLEE-----HRKV  161 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCGG--GHHHHHHH-----HHHH
T ss_pred             HHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhcCChH--HHHHHHHH-----HHHH
Confidence            333333334577999999999877777777777777664     37999999999987543  44444444     4555


Q ss_pred             HHHcC-CcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          173 LQLCD-NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       173 ~~~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      ....+ .+++      ..|+.++.+++++++.|.+.+.+
T Consensus       162 ~~~~~~~~~~------~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          162 FSKYGEYTII------PTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             HHSSCCSCEE------ECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             HhhcCCCceE------EEecCCCCCHHHHHHHHHHHhhc
Confidence            54433 2222      34556679999999999988765

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.87  E-value=1.5e-20  Score=142.09  Aligned_cols=172  Identities=16%  Similarity=0.261  Sum_probs=106.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcH--HHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSE--FVSKEI   93 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~   93 (225)
                      ....++|+|+|.+|+|||||+|+|++..........++.|.......  .  +..+.+|||||+.+......  +....+
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   95 (195)
T 1svi_A           20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--I--NDELHFVDVPGYGFAKVSKSEREAWGRM   95 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE--E--TTTEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--E--CCcEEEEECCCCCccccCHHHHHHHHHH
Confidence            34679999999999999999999998763322233444555544433  2  34799999999887654332  112222


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                      ..........+|++++|+|+.++.+..+.++++++.+     ...|+++|+||+|.....  .......+     +++.+
T Consensus        96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~p~i~v~nK~Dl~~~~--~~~~~~~~-----~~~~~  163 (195)
T 1svi_A           96 IETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY-----YGIPVIVIATKADKIPKG--KWDKHAKV-----VRQTL  163 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGGSCGG--GHHHHHHH-----HHHHH
T ss_pred             HHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEECcccCChH--HHHHHHHH-----HHHHH
Confidence            2222223346699999999987788777777777665     237999999999987643  34333333     33323


Q ss_pred             HH-cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          174 QL-CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       174 ~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      .. .+.+++      ..|+.++.++++|++.|.+.++
T Consensus       164 ~~~~~~~~~------~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          164 NIDPEDELI------LFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             TCCTTSEEE------ECCTTTCTTHHHHHHHHHHHHT
T ss_pred             cccCCCceE------EEEccCCCCHHHHHHHHHHHhc
Confidence            21 122222      3455667899999999987664

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.84  E-value=6.3e-20  Score=136.56  Aligned_cols=168  Identities=16%  Similarity=0.198  Sum_probs=107.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ...++|+++|.+|+|||||+|+|++......  ..++.|.......+.+ ++..+.+|||||.......           
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~-----------   71 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQ--EAGGITQHIGAYQVTV-NDKKITFLDTPGHEAFTTM-----------   71 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTCSSCS--SCCSSSTTCCCCEEEE-TTEEEEESCCCSSSSSSCS-----------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCccccC--CCCceeEeeeEEEEEe-CCceEEEEECCCCHHHHHH-----------
Confidence            4568999999999999999999998765322  1233333443445556 7788999999998765321           


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      .......+|++++|+|++++......+.+..+.   .  ...|+++|+||+|+.............+     ...+.+.+
T Consensus        72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~---~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~  141 (178)
T 2lkc_A           72 RARGAQVTDIVILVVAADDGVMPQTVEAINHAK---A--ANVPIIVAINKMDKPEANPDRVMQELME-----YNLVPEEW  141 (178)
T ss_dssp             CCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHG---G--GSCCEEEEEETTTSSCSCHHHHHHHHTT-----TTCCBTTT
T ss_pred             HHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHH---h--CCCCEEEEEECccCCcCCHHHHHHHHHh-----cCcChhHc
Confidence            124567889999999997665555544443332   2  2479999999999875421122221111     00011111


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                      +..+..+    ..|+.++.++++|++.|.+.+....
T Consensus       142 ~~~~~~~----~~Sa~~~~gv~~l~~~l~~~~~~~~  173 (178)
T 2lkc_A          142 GGDTIFC----KLSAKTKEGLDHLLEMILLVSEMEE  173 (178)
T ss_dssp             TSSEEEE----ECCSSSSHHHHHHHHHHHHHHHHTT
T ss_pred             CCcccEE----EEecCCCCCHHHHHHHHHHhhhhhc
Confidence            2112222    3466777999999999998877654

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.84  E-value=2.8e-19  Score=138.82  Aligned_cols=181  Identities=15%  Similarity=0.117  Sum_probs=107.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ....++|+|+|.+|+|||||+|+|++.... . ......|.........+ .+..+.||||||+.+..........  ..
T Consensus        26 ~~~~~kI~vvG~~~vGKSsLin~l~~~~~~-~-~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~--~~  100 (228)
T 2qu8_A           26 NPHKKTIILSGAPNVGKSSFMNIVSRANVD-V-QSYSFTTKNLYVGHFDH-KLNKYQIIDTPGLLDRAFENRNTIE--MT  100 (228)
T ss_dssp             CTTSEEEEEECSTTSSHHHHHHHHTTTCEE-E-ECC-----CEEEEEEEE-TTEEEEEEECTTTTTSCGGGCCHHH--HH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCc-c-CCCCCcceeeeeeeeec-CCCeEEEEECCCCcCcccchhhhHH--HH
Confidence            356799999999999999999999988753 2 22345566666666666 6789999999999754211111110  01


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      .+......+|++|+|+|++++.+........++..+.......|+++|+||+|+....... .+....     +.++...
T Consensus       101 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~-----~~~~~~~  174 (228)
T 2qu8_A          101 TITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLS-IDNKLL-----IKQILDN  174 (228)
T ss_dssp             HHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCC-HHHHHH-----HHHHHHH
T ss_pred             HHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhH-HHHHHH-----HHHHHHh
Confidence            1112245679999999997554422222333444332221247999999999987543111 111111     3444444


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      .+..+..+    ..|+.++.+++++++.|.+.+.+.
T Consensus       175 ~~~~~~~~----~~SA~~g~gi~~l~~~l~~~i~~~  206 (228)
T 2qu8_A          175 VKNPIKFS----SFSTLTGVGVEQAKITACELLKND  206 (228)
T ss_dssp             CCSCEEEE----ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             cCCCceEE----EEecccCCCHHHHHHHHHHHHHHH
Confidence            44112222    345667799999999998877654

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.84  E-value=2.4e-20  Score=148.93  Aligned_cols=173  Identities=18%  Similarity=0.264  Sum_probs=100.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCC----CCceeEEEEEEEEee-CC--ceEEEEeCCCCCCCCCCcH---
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGS----SGVTKTCEMQRTMLK-DG--QVVNVIDTPGLFDSSADSE---   87 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~----~~~t~~~~~~~~~~~-~~--~~~~liDtPG~~~~~~~~~---   87 (225)
                      ..++|+|+|.+|+|||||+|+|++...+......    ...|.........+. ++  ..+.||||||+++......   
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~   86 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ   86 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence            4689999999999999999999998876543210    122333333333321 33  2899999999987643322   


Q ss_pred             HHH----HHHHHHHhh---------cCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158           88 FVS----KEIVKCIGM---------TKDGIHAVLVVFSVR-NRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN  153 (225)
Q Consensus        88 ~~~----~~~~~~~~~---------~~~~~~~ii~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~  153 (225)
                      .+.    .++..++..         ...++|+++++++.. ..+...+.++++.+..      ..|+++|+||+|.....
T Consensus        87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~~~~  160 (274)
T 3t5d_A           87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLTPE  160 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCCCHH
Confidence            111    111222221         234578999998654 4678888777776654      38999999999987543


Q ss_pred             cccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          154 DETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                        ....+..+     +.+.+..++.+++.+      ++..+.+++++.+.|.++++
T Consensus       161 --e~~~~~~~-----i~~~l~~~~i~v~~~------sa~~~~~~~~l~~~l~~~~p  203 (274)
T 3t5d_A          161 --ECQQFKKQ-----IMKEIQEHKIKIYEF------PETDDEEENKLVKKIKDRLP  203 (274)
T ss_dssp             --HHHHHHHH-----HHHHHHHTTCCCCCC-----------------CHHHHHTCS
T ss_pred             --HHHHHHHH-----HHHHHHHcCCeEEcC------CCCCChhHHHHHHHHhcCCC
Confidence              45555444     666677777664444      34556889999998877653

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.83  E-value=1.5e-20  Score=159.44  Aligned_cols=167  Identities=19%  Similarity=0.271  Sum_probs=112.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (225)
                      ++|+++|.+|+|||||+|+|++.....+ ...+++|++.....+.+ ++..+.||||||+....  .+.....+...+..
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v-~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~   77 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIV-EDEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNP--QDIISQKMKEVTLN   77 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTSSG--GGCCCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCcee-cCCCCCccceeeEEEEE-CCeEEEEEECCCccccc--cchHHHHHHHHHHH
Confidence            5799999999999999999998875433 34677888888888888 88899999999987431  11223345555556


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc
Q 036158          100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR  179 (225)
Q Consensus       100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (225)
                      ++..+|++|+|+|+..+++..+..+.+++++.     .+|+++|+||+|....    .....       ..+.. ..+. 
T Consensus        78 ~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~-----~~p~ilv~NK~D~~~~----~~~~~-------~~~~~-~lg~-  139 (439)
T 1mky_A           78 MIREADLVLFVVDGKRGITKEDESLADFLRKS-----TVDTILVANKAENLRE----FEREV-------KPELY-SLGF-  139 (439)
T ss_dssp             HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-----TCCEEEEEESCCSHHH----HHHHT-------HHHHG-GGSS-
T ss_pred             HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCccc----cHHHH-------HHHHH-hcCC-
Confidence            67788999999999878888887777777652     3899999999996421    01100       02221 2232 


Q ss_pred             EEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          180 CVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       180 ~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                          ....+.||.++.++.+|++.|.+.+.+..
T Consensus       140 ----~~~~~iSA~~g~gv~~L~~~i~~~l~~~~  168 (439)
T 1mky_A          140 ----GEPIPVSAEHNINLDTMLETIIKKLEEKG  168 (439)
T ss_dssp             ----CSCEECBTTTTBSHHHHHHHHHHHHHHTT
T ss_pred             ----CCEEEEeccCCCCHHHHHHHHHHhccccc
Confidence                22345688889999999999998887643

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.83  E-value=7.2e-20  Score=133.97  Aligned_cols=158  Identities=22%  Similarity=0.257  Sum_probs=104.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (225)
                      ++|+++|.+|+|||||+|++.+...... ...++.|.......+.+ ++..+.+|||||......    ....+...+..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~----~~~~~~~~~~~   75 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVV-ADVPGVTRDLKEGVVET-DRGRFLLVDTGGLWSGDK----WEKKIQEKVDR   75 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEE-TTEEEEEEECGGGCSSSS----CCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeec-cCCCCceecceEEEEEe-CCceEEEEECCCCCCccc----hHHHHHHHHHH
Confidence            6899999999999999999998764222 23445566666666776 778999999999886432    12233344445


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc
Q 036158          100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR  179 (225)
Q Consensus       100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (225)
                      ....+|++++|+|+.++++..+..+.+++.+.     ..|+++|+||+|.....     +.        ..++. ..+. 
T Consensus        76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~-----~~--------~~~~~-~~~~-  135 (161)
T 2dyk_A           76 ALEDAEVVLFAVDGRAELTQADYEVAEYLRRK-----GKPVILVATKVDDPKHE-----LY--------LGPLY-GLGF-  135 (161)
T ss_dssp             HTTTCSEEEEEEESSSCCCHHHHHHHHHHHHH-----TCCEEEEEECCCSGGGG-----GG--------CGGGG-GGSS-
T ss_pred             HHHhCCEEEEEEECCCcccHhHHHHHHHHHhc-----CCCEEEEEECcccccch-----Hh--------HHHHH-hCCC-
Confidence            56788999999999877777776666666652     37999999999976431     11        11111 2232 


Q ss_pred             EEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          180 CVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       180 ~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                          ......|+.++.+++++++.+.+.
T Consensus       136 ----~~~~~~Sa~~~~gv~~l~~~l~~~  159 (161)
T 2dyk_A          136 ----GDPIPTSSEHARGLEELLEAIWER  159 (161)
T ss_dssp             ----CSCEECBTTTTBSHHHHHHHHHHH
T ss_pred             ----CCeEEEecccCCChHHHHHHHHHh
Confidence                123455677789999999998764

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.83  E-value=3.1e-19  Score=134.45  Aligned_cols=170  Identities=13%  Similarity=0.061  Sum_probs=105.4

Q ss_pred             CCCCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHH
Q 036158           12 PTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVS   90 (225)
Q Consensus        12 ~~~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~   90 (225)
                      ........++|+|+|.+|+|||||+|+|++...........  +.......+... ....+.||||||.......     
T Consensus        15 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----   87 (189)
T 2gf9_A           15 VPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTV--GIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI-----   87 (189)
T ss_dssp             CCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCC--CCEEEEEEEEETTEEEEEEEEECCSCCSSCCS-----
T ss_pred             CCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCce--eEEEEEEEEEECCeEEEEEEEeCCCcHHHhhh-----
Confidence            33444557899999999999999999999876432222222  222222333331 2347999999997754321     


Q ss_pred             HHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchH
Q 036158           91 KEIVKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPL  169 (225)
Q Consensus        91 ~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~  169 (225)
                            +..+...+|++|+|+|+.++.+... ..++..+.....  ...|+++|+||+|+........+         ..
T Consensus        88 ------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~---------~~  150 (189)
T 2gf9_A           88 ------TTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSW--DNAQVILVGNKCDLEDERVVPAE---------DG  150 (189)
T ss_dssp             ------GGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHH---------HH
T ss_pred             ------HHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccccccCCCHH---------HH
Confidence                  2345668899999999974322221 223344443321  24799999999998654311111         13


Q ss_pred             HHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          170 KEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      +++.+..+..++      ..|+.++.+++++++.|.+.+.++
T Consensus       151 ~~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~i~~~  186 (189)
T 2gf9_A          151 RRLADDLGFEFF------EASAKENINVKQVFERLVDVICEK  186 (189)
T ss_dssp             HHHHHHHTCEEE------ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCeEE------EEECCCCCCHHHHHHHHHHHHHHH
Confidence            445555554433      345566789999999998877654

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.82  E-value=7.9e-21  Score=155.72  Aligned_cols=176  Identities=16%  Similarity=0.129  Sum_probs=113.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (225)
                      .+|+|+|.+|+|||||+|+|++.....  ...+.+|..+....+.++++..+.|+||||+.+.......+...+.+.+. 
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i--~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~-  235 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKI--ADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIE-  235 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEE--SSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH-
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCcc--ccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHH-
Confidence            469999999999999999999876432  23455666666666777445899999999986433223334444444443 


Q ss_pred             cCCCccEEEEEEeCCC---CCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158          100 TKDGIHAVLVVFSVRN---RFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus       100 ~~~~~~~ii~v~~~~~---~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                         .+|++|+|+|+.+   +-...+ ..++..+..+...-...|+++|+||+|+....     +.        +.++.+.
T Consensus       236 ---~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~-----e~--------~~~l~~~  299 (342)
T 1lnz_A          236 ---RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA-----EN--------LEAFKEK  299 (342)
T ss_dssp             ---HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH-----HH--------HHHHHHH
T ss_pred             ---hccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH-----HH--------HHHHHHH
Confidence               3599999999974   222222 23444444432111358999999999976431     11        2333344


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC-CCCCH
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG-QPYTD  218 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~-~~~~~  218 (225)
                      ++..    ......|+.++.++++|++.|.+++.+... ..|.+
T Consensus       300 l~~~----~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~~~~y~~  339 (342)
T 1lnz_A          300 LTDD----YPVFPISAVTREGLRELLFEVANQLENTPEFPLYDE  339 (342)
T ss_dssp             CCSC----CCBCCCSSCCSSTTHHHHHHHHHHHTSCCCCCSSCS
T ss_pred             hhcC----CCEEEEECCCCcCHHHHHHHHHHHHhhCccccCCCc
Confidence            3322    134456778889999999999999988765 34443

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.82  E-value=1.9e-20  Score=159.64  Aligned_cols=183  Identities=16%  Similarity=0.210  Sum_probs=121.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCC---cHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSAD---SEFVSKE   92 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~---~~~~~~~   92 (225)
                      ....++|+++|.+|+|||||+|+|++...... ...+++|.+.....+.+ ++..+.||||||+.+....   .+.. ..
T Consensus       192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~-~~~~gtt~~~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~-~~  268 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIV-SNVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKY-SV  268 (456)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEE-CC------CTTSEEEEE-TTEEEEETTGGGTTTBTTBCCCCSHH-HH
T ss_pred             ccccceeEEecCCCCCHHHHHHHHhCCCcccc-CCCCCeEEEEEEEEEEE-CCceEEEEECCCCCcCcccchHHHHH-HH
Confidence            34578999999999999999999998764433 23456666665556666 7889999999998653311   1111 11


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158           93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI  172 (225)
Q Consensus        93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (225)
                      +.  ...+...+|++|+|+|+..+++..+.+++..+.+.     ..|+++|+||||+........+++.+.     +++.
T Consensus       269 ~~--~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~-----~~~~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~  336 (456)
T 4dcu_A          269 LR--ALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA-----GKAVVIVVNKWDAVDKDESTMKEFEEN-----IRDH  336 (456)
T ss_dssp             HH--HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-----TCEEEEEEECGGGSCCCSSHHHHHHHH-----HHHH
T ss_pred             HH--HHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHc-----CCCEEEEEEChhcCCCchHHHHHHHHH-----HHHh
Confidence            11  11233456999999999888888887777777652     379999999999886553344444433     4444


Q ss_pred             HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCCCH
Q 036158          173 LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTD  218 (225)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~~~  218 (225)
                      +...+..     .....||.++.++++|++.+.+...+......+.
T Consensus       337 ~~~~~~~-----~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~t~  377 (456)
T 4dcu_A          337 FQFLDYA-----PILFMSALTKKRIHTLMPAIIKASENHSLRVQTN  377 (456)
T ss_dssp             CGGGTTS-----CEEECCTTTCTTGGGHHHHHHHHHHHHTCCCCHH
T ss_pred             cccCCCC-----CEEEEcCCCCcCHHHHHHHHHHHHHHhcccCCHH
Confidence            4332221     1234566778999999999999888876655443

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.82  E-value=1.7e-20  Score=159.07  Aligned_cols=182  Identities=16%  Similarity=0.195  Sum_probs=114.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcH--HHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSE--FVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~~   94 (225)
                      ...++|+++|.+|+|||||+|+|++...... ...+++|.+.....+.+ ++..+.||||||+.+.....+  +....+.
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~-~~~~gtT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIV-SNVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEE-C---------CCEEEEE-TTEEEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceee-cCCCCceeeeeEEEEEE-CCeEEEEEECCCcCcCccccchHHHHHHHH
Confidence            3568999999999999999999998875433 23556677666666777 788899999999865432111  1111111


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      .  ..+...+|++++|+|+.++.+..+..++..+.+     ...|+++|+||||+........+++..+     +.+.+.
T Consensus       251 ~--~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~-----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~-----~~~~l~  318 (436)
T 2hjg_A          251 A--LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE-----AGKAVVIVVNKWDAVDKDESTMKEFEEN-----IRDHFQ  318 (436)
T ss_dssp             H--HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-----TTCEEEEEEECGGGSCCCTTHHHHHHHH-----HHHHCG
T ss_pred             H--HHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHH-----cCCcEEEEEECccCCCcchHHHHHHHHH-----HHHhcc
Confidence            1  123345699999999987888777666555543     2489999999999876542233333333     333333


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCCC
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYT  217 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~~  217 (225)
                      ....-     .....||.++.++++|++.+.+...+.....-+
T Consensus       319 ~~~~~-----~~~~~SA~tg~~v~~l~~~i~~~~~~~~~~~~t  356 (436)
T 2hjg_A          319 FLDYA-----PILFMSALTKKRIHTLMPAIIKASENHSLRVQT  356 (436)
T ss_dssp             GGTTS-----CEEECCTTTCTTGGGHHHHHHHHHHHHTCCCCH
T ss_pred             cCCCC-----CEEEEecccCCCHHHHHHHHHHHHHHhhcCCCH
Confidence            22221     123456677899999999999888876654433

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.82  E-value=1.6e-18  Score=128.99  Aligned_cols=165  Identities=16%  Similarity=0.167  Sum_probs=105.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEI   93 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~   93 (225)
                      ....++|+|+|.+|+|||||+|+|++.....  ...++.+.......+.+ ++  ..+.+|||||......         
T Consensus         6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~---------   73 (181)
T 3tw8_B            6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSG--SYITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRT---------   73 (181)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHCSCC-----CCTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCSS---------
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCC--ccCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhhh---------
Confidence            3456999999999999999999999877532  22344455555555666 55  5799999999654422         


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                        .+..+...+|++++|+|+.++.+...  ...++..+.......|+++|+||+|.........++         ...+.
T Consensus        74 --~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~  140 (181)
T 3tw8_B           74 --ITSTYYRGTHGVIVVYDVTSAESFVN--VKRWLHEINQNCDDVCRILVGNKNDDPERKVVETED---------AYKFA  140 (181)
T ss_dssp             --CCGGGGTTCSEEEEEEETTCHHHHHH--HHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred             --hHHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHH---------HHHHH
Confidence              12245678899999999975422222  222333322222247999999999976543111111         34444


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ...+.+++      ..|+.++.+++++++.|.+.+.+.
T Consensus       141 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~~  172 (181)
T 3tw8_B          141 GQMGIQLF------ETSAKENVNVEEMFNCITELVLRA  172 (181)
T ss_dssp             HHHTCCEE------ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HHcCCeEE------EEECCCCCCHHHHHHHHHHHHHHH
Confidence            45555443      345566789999999998887664

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.82  E-value=1.6e-18  Score=131.23  Aligned_cols=173  Identities=13%  Similarity=0.117  Sum_probs=105.6

Q ss_pred             CCCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHH
Q 036158           13 TSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKE   92 (225)
Q Consensus        13 ~~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~   92 (225)
                      .++....++|+|+|.+|+|||||+|+|++........   ..|.......+.. .+..+.||||||....          
T Consensus        11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~---~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~----------   76 (199)
T 4bas_A           11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHI---TATVGYNVETFEK-GRVAFTVFDMGGAKKF----------   76 (199)
T ss_dssp             -----CEEEEEEECCTTSCHHHHHHHHSCCC----CC---CCCSSEEEEEEEE-TTEEEEEEEECCSGGG----------
T ss_pred             ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccccc---ccccceeEEEEEe-CCEEEEEEECCCCHhH----------
Confidence            4556788999999999999999999999887543111   2233344444555 7889999999997533          


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc---------ccccEEEEEecCCCCCCCcccHHHHhhh
Q 036158           93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK---------ISDYMIVVFTGGDELEDNDETLEDYLGR  163 (225)
Q Consensus        93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~vv~~k~D~~~~~~~~~~~~~~~  163 (225)
                       ...+..++..+|++|+|+|+.++.+-..  ...++.......         ...|+++|+||+|+....  ..+++...
T Consensus        77 -~~~~~~~~~~~d~ii~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~  151 (199)
T 4bas_A           77 -RGLWETYYDNIDAVIFVVDSSDHLRLCV--VKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK--TAAELVEI  151 (199)
T ss_dssp             -GGGGGGGCTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC--CHHHHHHH
T ss_pred             -HHHHHHHHhcCCEEEEEEECCcHHHHHH--HHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC--CHHHHHHH
Confidence             2333456778999999999985433222  223333332221         147999999999987653  33333322


Q ss_pred             cCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158          164 ECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG  213 (225)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~  213 (225)
                       .  .+..+.+..+  +..+    ..|+.++.+++++++.|.+.+.+..+
T Consensus       152 -~--~~~~~~~~~~--~~~~----~~Sa~~g~gv~~l~~~l~~~~~~~~~  192 (199)
T 4bas_A          152 -L--DLTTLMGDHP--FVIF----ASNGLKGTGVHEGFSWLQETASRQSG  192 (199)
T ss_dssp             -H--THHHHHTTSC--EEEE----ECBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred             -h--cchhhccCCe--eEEE----EeeCCCccCHHHHHHHHHHHHHHHhc
Confidence             0  0111112222  2222    34566778999999999988877644

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.82  E-value=1.8e-18  Score=126.97  Aligned_cols=162  Identities=15%  Similarity=0.126  Sum_probs=99.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      +.++|+++|.+|+|||||+|++++......   ...++.......+.+ ++.  .+.+|||||..+..    ..   .. 
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~----~~---~~-   69 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEK---YDPTIEDFYRKEIEV-DSSPSVLEILDTAGTEQFA----SM---RD-   69 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSC---CCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCCH----HH---HH-
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCccc---CCCCcceeEEEEEEE-CCEEEEEEEEECCCchhhH----HH---HH-
Confidence            468999999999999999999997664322   122222222334444 443  58999999976441    11   11 


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                         .....+|++++|+|+.++.+... ...+..+.+... ....|+++|+||+|+........++         ..++..
T Consensus        70 ---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~  136 (167)
T 1kao_A           70 ---LYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLESEREVSSSE---------GRALAE  136 (167)
T ss_dssp             ---HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred             ---HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcccccccCCHHH---------HHHHHH
Confidence               22335599999999974322221 223333433322 1247999999999976433111111         234444


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      ..+.+++      ..|+.++.+++++++.|.+.+.+
T Consensus       137 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~  166 (167)
T 1kao_A          137 EWGCPFM------ETSAKSKTMVDELFAEIVRQMNY  166 (167)
T ss_dssp             HHTSCEE------EECTTCHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCEE------EecCCCCcCHHHHHHHHHHHHhh
Confidence            4454433      33566789999999999887765

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.81  E-value=1.8e-19  Score=143.85  Aligned_cols=167  Identities=16%  Similarity=0.176  Sum_probs=111.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCc--HHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS--EFVSKEIVK   95 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~--~~~~~~~~~   95 (225)
                      +.++|+++|.+|+|||||+|+|++... .. ...+++|.......+.+ .+..+.+|||||+.+.....  ....+.+..
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~-~v-~~~~g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~   78 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQ-RV-GNWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIAC   78 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCE-EE-EECTTSSSEEEEEEEEC-SSCEEEEEECCCCSCSCC----CCHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCc-cc-CCCCCeeEEEEEEEEEe-CCCceEEEECcCCCccccccccCCHHHHHHH
Confidence            468999999999999999999999874 23 23567777777777777 67899999999998765211  112222222


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      .. .....+|++++|+|+.. . .....+...+.+.     ..|+++|+||+|.....  ..        ......+.+.
T Consensus        79 ~~-~~~~~~d~ii~VvD~~~-~-~~~~~~~~~l~~~-----~~p~ivv~NK~Dl~~~~--~~--------~~~~~~l~~~  140 (274)
T 3i8s_A           79 HY-ILSGDADLLINVVDASN-L-ERNLYLTLQLLEL-----GIPCIVALNMLDIAEKQ--NI--------RIEIDALSAR  140 (274)
T ss_dssp             HH-HHHTCCSEEEEEEEGGG-H-HHHHHHHHHHHHH-----TCCEEEEEECHHHHHHT--TE--------EECHHHHHHH
T ss_pred             HH-HhhcCCCEEEEEecCCC-h-HHHHHHHHHHHhc-----CCCEEEEEECccchhhh--hH--------HHHHHHHHHh
Confidence            21 22357899999999973 2 2233344444443     48999999999975432  11        1113444445


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      .+.+++      +.|+.++.++++|++.|.+.+...
T Consensus       141 lg~~~i------~~SA~~g~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          141 LGCPVI------PLVSTRGRGIEALKLAIDRYKANE  170 (274)
T ss_dssp             HTSCEE------ECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred             cCCCEE------EEEcCCCCCHHHHHHHHHHHHhcC
Confidence            554433      345677899999999998776544

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.81  E-value=9.7e-20  Score=135.49  Aligned_cols=164  Identities=18%  Similarity=0.183  Sum_probs=104.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      +..+|+++|.+|+|||||+|+|.+...... ...+++|.......+.+ ++..+.+|||||+.+.....+..  .+...+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~-~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~--~~~~~~   78 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIV-TDIAGTTRDVLREHIHI-DGMPLHIIDTAGLREASDEVERI--GIERAW   78 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCC-CSSTTCCCSCEEEEEEE-TTEEEEEEECCCCSCCSSHHHHH--HHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccee-eCCCCceeceeeEEEEE-CCeEEEEEECCCcccchhHHHHH--HHHHHH
Confidence            457999999999999999999998764222 22445565555566666 67789999999987542111110  111111


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                       .++..+|++++|+|+.++.+.....++..+.+...  ...|+++|+||+|+..... .   +. +           ..+
T Consensus        79 -~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~-~---~~-~-----------~~~  139 (172)
T 2gj8_A           79 -QEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLP--AKLPITVVRNKADITGETL-G---MS-E-----------VNG  139 (172)
T ss_dssp             -HHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSC--TTCCEEEEEECHHHHCCCC-E---EE-E-----------ETT
T ss_pred             -HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcc--cCCCEEEEEECccCCcchh-h---hh-h-----------ccC
Confidence             23457899999999976655555556666655432  2379999999999743210 0   00 0           011


Q ss_pred             CcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                        ..    ....||.++.++++|++.|.+.+..
T Consensus       140 --~~----~~~~SA~~g~gv~~l~~~l~~~~~~  166 (172)
T 2gj8_A          140 --HA----LIRLSARTGEGVDVLRNHLKQSMGF  166 (172)
T ss_dssp             --EE----EEECCTTTCTTHHHHHHHHHHHC--
T ss_pred             --Cc----eEEEeCCCCCCHHHHHHHHHHHhhh
Confidence              11    2345677789999999999776544

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.81  E-value=9.9e-21  Score=161.35  Aligned_cols=169  Identities=19%  Similarity=0.196  Sum_probs=106.6

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158           14 SPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEI   93 (225)
Q Consensus        14 ~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (225)
                      .+.+..++|+|+|.+|+|||||+|+|++.....+ ...++.|.+.....+.+ .+..+.||||||+...   .+...+.+
T Consensus        18 ~~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~-~~~~~~liDT~G~~~~---~~~~~~~~   92 (456)
T 4dcu_A           18 GSHMGKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIG---DEPFLAQI   92 (456)
T ss_dssp             -----CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTT-CSSCCEEECCCC---------CCHHHH
T ss_pred             hhhcCCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEE-CCceEEEEECCCCCCc---chHHHHHH
Confidence            3345678999999999999999999998775433 34678888888888888 7889999999998733   22334556


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                      ...+..+...+|++|+|+|+..+++..+.++++.+.+     ..+|+++|+||+|..... ....++        +    
T Consensus        93 ~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~-----~~~pvilV~NK~D~~~~~-~~~~e~--------~----  154 (456)
T 4dcu_A           93 RQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTEMR-ANIYDF--------Y----  154 (456)
T ss_dssp             HHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT-----CCSCEEEEEECC----------CCS--------G----
T ss_pred             HHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH-----cCCCEEEEEECccchhhh-hhHHHH--------H----
Confidence            6666666677899999999987888888877777754     248999999999976432 011111        1    


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                       ..+.     ......||.++.++.+|++.+.+.+.+.
T Consensus       155 -~lg~-----~~~~~iSA~~g~gv~~L~~~i~~~l~~~  186 (456)
T 4dcu_A          155 -SLGF-----GEPYPISGTHGLGLGDLLDAVAEHFKNI  186 (456)
T ss_dssp             -GGSS-----SSEEECCTTTCTTHHHHHHHHHTTGGGS
T ss_pred             -HcCC-----CceEEeecccccchHHHHHHHHhhcccc
Confidence             0111     1122457778899999999998776543

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.81  E-value=1e-18  Score=128.93  Aligned_cols=163  Identities=11%  Similarity=0.119  Sum_probs=100.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ...++|+|+|.+|+|||||+|++++......  ..+..+.......+.+ ++  ..+.+|||||..+.           .
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~   69 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDK--HITTLGASFLTKKLNI-GGKRVNLAIWDTAGQERF-----------H   69 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCCSS--CCCCCSCEEEEEEEES-SSCEEEEEEEECCCC---------------
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCcC--CCCccceEEEEEEEEE-CCEEEEEEEEECCCcHhh-----------h
Confidence            4468999999999999999999997764222  1222233333334444 33  37889999996533           2


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                      .........+|++++|+|+.++.+... ..++..+......  ..|+++|+||+|+........++         ..++.
T Consensus        70 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~---------~~~~~  138 (170)
T 1z08_A           70 ALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN--EICLCIVGNKIDLEKERHVSIQE---------AESYA  138 (170)
T ss_dssp             ---CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGG--GSEEEEEEECGGGGGGCCSCHHH---------HHHHH
T ss_pred             hhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECcccccccccCHHH---------HHHHH
Confidence            233456778999999999974322222 2233444443322  37999999999986543112111         34455


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      +..+..++      ..|+.++.+++++++.|.+.+.+
T Consensus       139 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~  169 (170)
T 1z08_A          139 ESVGAKHY------HTSAKQNKGIEELFLDLCKRMIE  169 (170)
T ss_dssp             HHTTCEEE------EEBTTTTBSHHHHHHHHHHHHHC
T ss_pred             HHcCCeEE------EecCCCCCCHHHHHHHHHHHHhh
Confidence            55565443      34556778999999999877653

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.81  E-value=1.7e-18  Score=131.71  Aligned_cols=169  Identities=17%  Similarity=0.146  Sum_probs=101.5

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEe-eCCceEEEEeCCCCCCCCCCcHHHHHH
Q 036158           14 SPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTML-KDGQVVNVIDTPGLFDSSADSEFVSKE   92 (225)
Q Consensus        14 ~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~   92 (225)
                      .+....++|+|+|.+|+|||||+|+|++......   ...++.........+ .....+.||||||..+....       
T Consensus        19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------   88 (201)
T 3oes_A           19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEG---YDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL-------   88 (201)
T ss_dssp             ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSC---CCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCC-------
T ss_pred             CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCC---CCCccceEEEEEEEECCEEEEEEEEECCCccchHHH-------
Confidence            3456789999999999999999999998764322   112222221222222 13457899999998765322       


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHH
Q 036158           93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK  170 (225)
Q Consensus        93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~  170 (225)
                          +..+...+|++++|+|+.++.+.  .....++..+...  ....|+++|+||+|+.........+         ..
T Consensus        89 ----~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~---------~~  153 (201)
T 3oes_A           89 ----PYSFIIGVHGYVLVYSVTSLHSF--QVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVE---------GK  153 (201)
T ss_dssp             ----CGGGTTTCCEEEEEEETTCHHHH--HHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHH---------HH
T ss_pred             ----HHHHHhcCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHH---------HH
Confidence                22456688999999999743221  1222333333222  1247999999999976443111111         23


Q ss_pred             HHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158          171 EILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG  213 (225)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~  213 (225)
                      ++....+..++      ..|+.++.+++++++.|.+.+.+...
T Consensus       154 ~~~~~~~~~~~------~~Sa~~~~~v~~l~~~l~~~i~~~~~  190 (201)
T 3oes_A          154 KLAESWGATFM------ESSARENQLTQGIFTKVIQEIARVEN  190 (201)
T ss_dssp             HHHHHHTCEEE------ECCTTCHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHhCCeEE------EEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence            44455554332      34667789999999999988877643

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.81  E-value=1.4e-18  Score=129.96  Aligned_cols=165  Identities=18%  Similarity=0.154  Sum_probs=101.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEI   93 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~   93 (225)
                      ..+.++|+|+|.+|+|||||+|+|++......   ...++.......+.+ ++  ..+.||||||..+..    ..   +
T Consensus        15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~----~~---~   83 (187)
T 2a9k_A           15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVED---YEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDYA----AI---R   83 (187)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHSCCCCS---CCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCCH----HH---H
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCc---CCCccceEEEEEEEE-CCEEEEEEEEECCCCcccH----HH---H
Confidence            45679999999999999999999997764221   222222333333444 44  378999999976431    11   1


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI  172 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (225)
                      .    .+...+|++++|+|+.+..+... ..++..+..... ....|+++|+||+|+........++         ++++
T Consensus        84 ~----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~  149 (187)
T 2a9k_A           84 D----NYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEE---------AKNR  149 (187)
T ss_dssp             H----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTCCEEEEEECGGGGGGCCSCHHH---------HHHH
T ss_pred             H----HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccCccCHHH---------HHHH
Confidence            1    22335699999999974322111 233344444332 1247999999999976543111111         3445


Q ss_pred             HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          173 LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      .+..+.+++      ..|+.++.+++++++.|.+.+.++
T Consensus       150 ~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~~  182 (187)
T 2a9k_A          150 AEQWNVNYV------ETSAKTRANVDKVFFDLMREIRAR  182 (187)
T ss_dssp             HHHTTCEEE------ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHcCCeEE------EeCCCCCCCHHHHHHHHHHHHHHh
Confidence            555565433      234556689999999998877654

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.81  E-value=1e-18  Score=128.97  Aligned_cols=164  Identities=13%  Similarity=0.117  Sum_probs=105.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ..+.++|+++|.+|+|||||+|+|.+.....     ...|.......+.+ ++..+.+|||||....           ..
T Consensus         4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-----~~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~-----------~~   66 (171)
T 1upt_A            4 MTREMRILILGLDGAGKTTILYRLQVGEVVT-----TIPTIGFNVETVTY-KNLKFQVWDLGGLTSI-----------RP   66 (171)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHSSCCC-----CCCCSSEEEEEEEE-TTEEEEEEEECCCGGG-----------GG
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCC-----cCCcCccceEEEEE-CCEEEEEEECCCChhh-----------hH
Confidence            3566999999999999999999998766421     12233444556666 6889999999997532           22


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                      .+..+...+|++++|+|+.++.+-..  ...++.......  ...|+++|+||+|+....  ..++....     +.  .
T Consensus        67 ~~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~-----~~--~  135 (171)
T 1upt_A           67 YWRCYYSNTDAVIYVVDSCDRDRIGI--SKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSSEMANS-----LG--L  135 (171)
T ss_dssp             GGGGGCTTCSEEEEEEETTCCTTHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHH-----HT--G
T ss_pred             HHHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhCCCEEEEEEECCCCcCCC--CHHHHHHH-----hC--c
Confidence            33456678999999999975533222  223333333221  347999999999987653  22222211     00  0


Q ss_pred             HHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          174 QLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       174 ~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ..+.. .+..    ...|+.++.+++++++.|.+.+.+.
T Consensus       136 ~~~~~~~~~~----~~~Sa~~~~gi~~l~~~l~~~i~~~  170 (171)
T 1upt_A          136 PALKDRKWQI----FKTSATKGTGLDEAMEWLVETLKSR  170 (171)
T ss_dssp             GGCTTSCEEE----EECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             hhccCCceEE----EECcCCCCcCHHHHHHHHHHHHhhc
Confidence            11111 1222    2456677799999999998887654

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.81  E-value=3.1e-18  Score=129.37  Aligned_cols=166  Identities=18%  Similarity=0.152  Sum_probs=107.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ...++|+|+|.+|+|||||+|+|++......  ..+..+.......+.+ ++  ..+.||||||......          
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~----------   80 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTES--YISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRT----------   80 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSC--CCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGCT----------
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCC--CCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhhhh----------
Confidence            4568999999999999999999997764322  2344455555555666 44  4799999999654321          


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                       .+..+...+|++|+|+|+.++.+.. ...++..+......  ..|+++|+||+|+........+         ...++.
T Consensus        81 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~~~~~~~---------~~~~~~  148 (196)
T 3tkl_A           81 -ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTKKVVDYT---------TAKEFA  148 (196)
T ss_dssp             -THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTTTCCSCHH---------HHHHHH
T ss_pred             -hHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccccccccCHH---------HHHHHH
Confidence             1123445789999999997432211 12344444443322  4799999999998755311111         134455


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG  213 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~  213 (225)
                      ...+.+++.      .|+.++.+++++++.|.+.+.+...
T Consensus       149 ~~~~~~~~~------~Sa~~g~gv~~l~~~l~~~i~~~~~  182 (196)
T 3tkl_A          149 DSLGIPFLE------TSAKNATNVEQSFMTMAAEIKKRMG  182 (196)
T ss_dssp             HHTTCCEEE------ECTTTCTTHHHHHHHHHHHHHHHC-
T ss_pred             HHcCCcEEE------EeCCCCCCHHHHHHHHHHHHHHHhc
Confidence            555655443      3555678999999999988877643

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.81  E-value=3e-19  Score=141.13  Aligned_cols=161  Identities=15%  Similarity=0.163  Sum_probs=105.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcH--HHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSE--FVSKEIVKCI   97 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~~~~~   97 (225)
                      ++|+++|.+|+|||||+|+|+|.... . ...+++|.+.....+.+ ++..+.||||||+.+......  ...+.+....
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~-v-~~~pg~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~   78 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQR-V-GNWPGVTVEKKTGEFLL-GEHLIEITDLPGVYSLVANAEGISQDEQIAAQS   78 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEE-E-EECTTSSSEEEEEEEEE-TTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCC-c-cCCCCceEEEEEEEEEE-CCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence            58999999999999999999998743 2 23567777777777777 788999999999987653210  1122222221


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      . ....+|++|+|+|+.. . .....+...+.+     ...|+++|+||+|.....  .        .......+.+..+
T Consensus        79 ~-~~~~~d~vi~VvDas~-~-~~~~~l~~~l~~-----~~~pvilv~NK~Dl~~~~--~--------~~~~~~~l~~~lg  140 (256)
T 3iby_A           79 V-IDLEYDCIINVIDACH-L-ERHLYLTSQLFE-----LGKPVVVALNMMDIAEHR--G--------ISIDTEKLESLLG  140 (256)
T ss_dssp             H-HHSCCSEEEEEEEGGG-H-HHHHHHHHHHTT-----SCSCEEEEEECHHHHHHT--T--------CEECHHHHHHHHC
T ss_pred             H-hhCCCCEEEEEeeCCC-c-hhHHHHHHHHHH-----cCCCEEEEEEChhcCCcC--C--------cHHHHHHHHHHcC
Confidence            1 1257899999999973 1 122223333322     248999999999975432  1        1111344444455


Q ss_pred             CcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                      .+++      +.|+.++.++++|++.|.++
T Consensus       141 ~~vi------~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          141 CSVI------PIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             SCEE------ECBGGGTBSHHHHHHHHHTC
T ss_pred             CCEE------EEECCCCCCHHHHHHHHHhh
Confidence            4433      45666779999999999887

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.80  E-value=3.6e-18  Score=127.49  Aligned_cols=167  Identities=16%  Similarity=0.146  Sum_probs=102.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      .+.++|+++|.+|+|||||+|+|++......   ...++.......... ++  ..+.+|||||..++....        
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~--------   71 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDS---YDPTIENTFTKLITV-NGQEYHLQLVDTAGQDEYSIFP--------   71 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSC---CCTTCCEEEEEEEEE-TTEEEEEEEEECCCCCTTCCCC--------
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCC---CCCCccccEEEEEEE-CCEEEEEEEEeCCCchhhhHHH--------
Confidence            3568999999999999999999996553222   122222222333444 45  367899999987653221        


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                         ..+...+|++++|+|+.++.+... ..++..+.+... ....|+++|+||+|+........++         ..++.
T Consensus        72 ---~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~  138 (181)
T 3t5g_A           72 ---QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG-KVQIPIMLVGNKKDLHMERVISYEE---------GKALA  138 (181)
T ss_dssp             ---GGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSCHHH---------HHHHH
T ss_pred             ---HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhcceecHHH---------HHHHH
Confidence               235567899999999974322222 122333333222 1247999999999976443112221         34455


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCC
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQ  214 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~  214 (225)
                      +..+..++      ..|+.++.+++++++.|.+.+.+..+.
T Consensus       139 ~~~~~~~~------~~Sa~~~~~v~~l~~~l~~~~~~~~~~  173 (181)
T 3t5g_A          139 ESWNAAFL------ESSAKENQTAVDVFRRIILEAEKMDGA  173 (181)
T ss_dssp             HHTTCEEE------ECCTTSHHHHHHHHHHHHHHHHTC---
T ss_pred             HHhCCcEE------EEecCCCCCHHHHHHHHHHHHHHhcCC
Confidence            55555433      345667899999999999988876553

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.80  E-value=4.3e-20  Score=156.57  Aligned_cols=164  Identities=19%  Similarity=0.185  Sum_probs=104.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      .++|+++|.+|+|||||+|+|++.....+ ...+++|++.....+.+ .+..+.||||||+....   ......+...+.
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~---~~~~~~~~~~~~   77 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGD---EPFLAQIRQQAE   77 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTT-CSSCCEEEC------------CHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEE-CCceEEEEECCCCCCcc---hhHHHHHHHHHH
Confidence            37899999999999999999998775433 34677888888888888 78899999999987332   113445555555


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN  178 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (225)
                      .+...+|++|+|+|+..+++..+.++.+.+++     ..+|+++|+||+|..... ...        .+..     ..+ 
T Consensus        78 ~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~-----~~~pvilv~NK~D~~~~~-~~~--------~~~~-----~lg-  137 (436)
T 2hjg_A           78 IAMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTEMR-ANI--------YDFY-----SLG-  137 (436)
T ss_dssp             HHHHHCSEEEEEEETTTCSCHHHHHHHHHHTT-----CCSCEEEEEECCCC------CC--------CSSG-----GGS-
T ss_pred             HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCccch-hhH--------HHHH-----HcC-
Confidence            66667899999999987888877666665543     248999999999976432 010        1111     112 


Q ss_pred             cEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          179 RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                          +....+.||.++.++.+|++.+.+.+.+.
T Consensus       138 ----~~~~~~iSA~~g~gv~~L~~~i~~~l~~~  166 (436)
T 2hjg_A          138 ----FGEPYPISGTHGLGLGDLLDAVAEHFKNI  166 (436)
T ss_dssp             ----SCCCEECBTTTTBTHHHHHHHHHHTGGGC
T ss_pred             ----CCCeEEEeCcCCCChHHHHHHHHHhcCcc
Confidence                12334567888999999999998888653

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.80  E-value=5.3e-19  Score=131.43  Aligned_cols=164  Identities=16%  Similarity=0.142  Sum_probs=99.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEI   93 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~   93 (225)
                      ....++|+|+|.+|+|||||+|+|++........  +..+.......+.. ++  ..+.+|||||.....       .  
T Consensus        12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~-------~--   79 (179)
T 1z0f_A           12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCP--HTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFR-------A--   79 (179)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCT--TSCCCCEEEEEEEE-TTEEEEEEEEECTTGGGTC-------H--
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CccceEEEEEEEEE-CCeEEEEEEEECCCChHhh-------h--
Confidence            3457999999999999999999999876432222  22222222233333 33  478999999965432       1  


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI  172 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (225)
                        .+..+...+|++++|+|+.++.+... ..++..+.....  ...|+++|+||+|+........+         ..+++
T Consensus        80 --~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~---------~~~~~  146 (179)
T 1z0f_A           80 --VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIILIGNKADLEAQRDVTYE---------EAKQF  146 (179)
T ss_dssp             --HHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHH---------HHHHH
T ss_pred             --hHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHH---------HHHHH
Confidence              11223346799999999975422222 223334444322  24789999999998643311111         13445


Q ss_pred             HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          173 LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      .+..+..++      ..|+.++.+++++++.|.+.+.+
T Consensus       147 ~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~  178 (179)
T 1z0f_A          147 AEENGLLFL------EASAKTGENVEDAFLEAAKKIYQ  178 (179)
T ss_dssp             HHHTTCEEE------ECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             HHHcCCEEE------EEeCCCCCCHHHHHHHHHHHHhh
Confidence            555554433      23556678999999998876643

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.80  E-value=3.3e-18  Score=127.38  Aligned_cols=166  Identities=16%  Similarity=0.117  Sum_probs=101.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ...++|+++|.+|+|||||+|+|++...... ...+..+.......+.. ++.  .+.+|||||....           .
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~-----------~   74 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAG-TFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERF-----------R   74 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCC-CCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC---------------
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCCC-CcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHHH-----------H
Confidence            4568999999999999999999998764322 12233333333333444 443  7899999996533           2


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                      ..+..+...+|++++|+|+.++.+..+ ..++..+.....  ...|+++|+||+|+........++         ..++.
T Consensus        75 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~  143 (180)
T 2g6b_A           75 SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAHERVVKRED---------GEKLA  143 (180)
T ss_dssp             ----CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTSCCCSCHHH---------HHHHH
T ss_pred             HHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccCcccccCHHH---------HHHHH
Confidence            223455667899999999974432222 233444444332  247999999999987543111111         23344


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                      +..+..++      ..|+.++.+++++++.|.+.+.++.
T Consensus       144 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~~~  176 (180)
T 2g6b_A          144 KEYGLPFM------ETSAKTGLNVDLAFTAIAKELKRRS  176 (180)
T ss_dssp             HHHTCCEE------ECCTTTCTTHHHHHHHHHHHHHC--
T ss_pred             HHcCCeEE------EEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            44454433      3455677899999999988876653

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.80  E-value=5.7e-19  Score=131.67  Aligned_cols=165  Identities=21%  Similarity=0.185  Sum_probs=100.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKD-GQVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ....++|+|+|.+|+|||||+|+|++...........+.+  .....+.+.+ ...+.||||||.....           
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------   75 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAA--FFSQTLAVNDATVKFEIWDTAGQERYH-----------   75 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCS--EEEEEEEETTEEEEEEEEECCCSGGGG-----------
T ss_pred             CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeE--EEEEEEEECCEEEEEEEEeCCCChhhh-----------
Confidence            3556899999999999999999999876533222222222  2223333311 3479999999965321           


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                      ..+......+|++|+|+|+.++.+.. ...++..+.....  ...|+++|+||+|+........++         ++++.
T Consensus        76 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~---------~~~~~  144 (181)
T 2efe_B           76 SLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN--PNMVMALAGNKSDLLDARKVTAED---------AQTYA  144 (181)
T ss_dssp             GGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTCCSCHHH---------HHHHH
T ss_pred             hhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCcccccccCCHHH---------HHHHH
Confidence            11223455789999999997443322 2233444443321  247899999999986543111111         34455


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      +..+.+++      ..|+.++.+++++++.|.+.+.+
T Consensus       145 ~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~~  175 (181)
T 2efe_B          145 QENGLFFM------ETSAKTATNVKEIFYEIARRLPR  175 (181)
T ss_dssp             HHTTCEEE------ECCSSSCTTHHHHHHHHHHTCC-
T ss_pred             HHcCCEEE------EEECCCCCCHHHHHHHHHHHHHh
Confidence            55554433      23556678999999999776644

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.80  E-value=3.1e-19  Score=134.88  Aligned_cols=167  Identities=17%  Similarity=0.095  Sum_probs=100.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ....++|+|+|.+|+|||||+|+|++...........+.+.......+.. ....+.||||||..+..           .
T Consensus        20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~   87 (192)
T 2fg5_A           20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGN-ELHKFLIWDTAGQERFH-----------S   87 (192)
T ss_dssp             -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSS-SEEEEEEEEECCSGGGG-----------G
T ss_pred             cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCC-EEEEEEEEcCCCchhhH-----------h
Confidence            35679999999999999999999998764322222333333333222221 34589999999965331           1


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      .+..+...+|++|+|+|+.++.+... ..++..+.+...  ...|+++|+||+|+........++         .+++.+
T Consensus        88 ~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~~~~v~~~~---------~~~~~~  156 (192)
T 2fg5_A           88 LAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGP--ENIVMAIAGNKCDLSDIREVPLKD---------AKEYAE  156 (192)
T ss_dssp             GTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred             hhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccccccccCHHH---------HHHHHH
Confidence            12234457799999999974422222 223334433321  247999999999986432111111         344555


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ..+..++      ..|+.++.+++++++.|.+.+.+.
T Consensus       157 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~~  187 (192)
T 2fg5_A          157 SIGAIVV------ETSAKNAINIEELFQGISRQIPPL  187 (192)
T ss_dssp             TTTCEEE------ECBTTTTBSHHHHHHHHHHTCC--
T ss_pred             HcCCEEE------EEeCCCCcCHHHHHHHHHHHHHhh
Confidence            5554433      345566789999999998766543

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.80  E-value=3.8e-19  Score=131.15  Aligned_cols=163  Identities=16%  Similarity=0.094  Sum_probs=99.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ...++|+++|.+|+|||||+|+|++...........+.+...  ....+. ....+.+|||||+....           .
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Dt~G~~~~~-----------~   70 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMT--KTVQYQNELHKFLIWDTAGLERFR-----------A   70 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEE--EEEEETTEEEEEEEEEECCSGGGG-----------G
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEE--EEEEECCeEEEEEEEcCCCchhhh-----------c
Confidence            346899999999999999999999877432222222323222  233331 22579999999975321           1


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      ........+|++++|+|+.++.+... ..++..+.....  ...|+++|.||+|.........+         ....+..
T Consensus        71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~~~~v~~~---------~~~~~~~  139 (170)
T 1z0j_A           71 LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP--PSIVVAIAGNKCDLTDVREVMER---------DAKDYAD  139 (170)
T ss_dssp             GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTSEEEEEEECTTCGGGCCSCHH---------HHHHHHH
T ss_pred             ccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECCccccccccCHH---------HHHHHHH
Confidence            12234457799999999975433222 234444444311  24689999999998654311111         1334444


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      ..+.+++      ..|+.++.+++++++.|.+.+.
T Consensus       140 ~~~~~~~------~~Sa~~~~~i~~l~~~i~~~i~  168 (170)
T 1z0j_A          140 SIHAIFV------ETSAKNAININELFIEISRRIP  168 (170)
T ss_dssp             HTTCEEE------ECBTTTTBSHHHHHHHHHHHCC
T ss_pred             HcCCEEE------EEeCCCCcCHHHHHHHHHHHHh
Confidence            5554433      3455667899999999977653

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.80  E-value=3.1e-18  Score=125.74  Aligned_cols=163  Identities=18%  Similarity=0.150  Sum_probs=98.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      .+.++|+++|.+|+|||||+|+|++......   ..+++.......+.+ ++  ..+.+|||||..+..       .   
T Consensus         2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~-------~---   67 (168)
T 1u8z_A            2 LALHKVIMVGSGGVGKSALTLQFMYDEFVED---YEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDYA-------A---   67 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSC---CCTTCCEEEEEEEEE-TTEEEEEEEEECCC---CH-------H---
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCccCCC---CCCCcceEEEEEEEE-CCEEEEEEEEECCCcchhH-------H---
Confidence            3568999999999999999999997764222   222222222233444 44  378999999975431       1   


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                       .+..+...+|++++|+|+.++.+... ..++..+...... ...|+++|+||+|+........++         ..+..
T Consensus        68 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~  136 (168)
T 1u8z_A           68 -IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVEE---------AKNRA  136 (168)
T ss_dssp             -HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGGCCSCHHH---------HHHHH
T ss_pred             -HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccccccCccCHHH---------HHHHH
Confidence             11222335699999999974322221 2333444443321 247999999999986543112221         34444


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      +..+.+++      ..|+.++.+++++++.+.+.+.+
T Consensus       137 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~  167 (168)
T 1u8z_A          137 DQWNVNYV------ETSAKTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             HHHTCEEE------ECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHcCCeEE------EeCCCCCCCHHHHHHHHHHHHHh
Confidence            55554433      33555678999999999887654

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.80  E-value=5.2e-18  Score=128.59  Aligned_cols=161  Identities=15%  Similarity=0.170  Sum_probs=99.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC----------------------------
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG----------------------------   68 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------------------   68 (225)
                      ...++|+|+|.+|+|||||+|+|++......  ..+..+.......+.+ ++                            
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHEN--TNTTIGASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITN   81 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSS--CCCCCSCEEEEEEEET-TC----------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCC--cCccccceeEEEEEEe-cCcccccccccccccccccccccccccccc
Confidence            4569999999999999999999998764321  1222222333333333 22                            


Q ss_pred             -----------ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccc
Q 036158           69 -----------QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKI  136 (225)
Q Consensus        69 -----------~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~  136 (225)
                                 ..+.||||||......           ........+|++|+|+|+.++.+..+ ..++..+....    
T Consensus        82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~----  146 (208)
T 3clv_A           82 QHNNYNENLCNIKFDIWDTAGQERYAS-----------IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS----  146 (208)
T ss_dssp             ---CCCTTTCEEEEEEEECTTGGGCTT-----------THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS----
T ss_pred             ccccccCccceeEEEEEECCCcHHHHH-----------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC----
Confidence                       6799999999664421           11223457799999999975432222 22233333321    


Q ss_pred             cccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          137 SDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       137 ~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ..|+++|+||+| ........++         ++++++..+.+++.      .|+..+.+++++++.|.+.+.++
T Consensus       147 ~~piilv~NK~D-~~~~~~~~~~---------~~~~~~~~~~~~~~------~Sa~~~~~i~~l~~~l~~~~~~~  205 (208)
T 3clv_A          147 NYIIILVANKID-KNKFQVDILE---------VQKYAQDNNLLFIQ------TSAKTGTNIKNIFYMLAEEIYKN  205 (208)
T ss_dssp             CCEEEEEEECTT-CC-CCSCHHH---------HHHHHHHTTCEEEE------ECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCC-cccccCCHHH---------HHHHHHHcCCcEEE------EecCCCCCHHHHHHHHHHHHHHh
Confidence            279999999999 4322112222         34555555654443      34556689999999998877654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.80  E-value=4.1e-19  Score=130.86  Aligned_cols=162  Identities=15%  Similarity=0.130  Sum_probs=97.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ..++|+++|.+|+|||||+|+|++...........+.+.  ....+.+. ....+.+|||||.....           ..
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~G~~~~~-----------~~   71 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAF--LTQTVCLDDTTVKFEIWDTAGQERYH-----------SL   71 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEE--EEEEEEETTEEEEEEEEEECCSGGGG-----------GG
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEE--EEEEEEECCEEEEEEEEeCCCcHHhh-----------hh
Confidence            468999999999999999999997664322222222222  22333331 23479999999965331           11


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      ...+...+|++++|+|++++.+... ..++..+.....  ...|+++|.||+|.........++         ..++...
T Consensus        72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~Dl~~~~~~~~~~---------~~~~~~~  140 (170)
T 1r2q_A           72 APMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS--PNIVIALSGNKADLANKRAVDFQE---------AQSYADD  140 (170)
T ss_dssp             HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred             hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCccccccCHHH---------HHHHHHH
Confidence            2234557899999999974422222 223333333222  247889999999976432111111         3344444


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      .+..++      ..|+.++.+++++++.|.+.+.
T Consensus       141 ~~~~~~------~~Sa~~g~gi~~l~~~i~~~~~  168 (170)
T 1r2q_A          141 NSLLFM------ETSAKTSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             TTCEEE------ECCTTTCTTHHHHHHHHHHTSC
T ss_pred             cCCeEE------EEeCCCCCCHHHHHHHHHHHHh
Confidence            454433      3455667899999999976553

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.80  E-value=1.7e-18  Score=130.79  Aligned_cols=165  Identities=18%  Similarity=0.156  Sum_probs=100.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ...++|+|+|.+|+|||||+|+|++...........+.+...  ..+... ....+.||||||.......          
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~----------   90 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFST--RTVMLGTAAVKAQIWDTAGLERYRAI----------   90 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEE--EEEEETTEEEEEEEEEESCCCTTCTT----------
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEE--EEEEECCEEEEEEEEeCCCchhhhhh----------
Confidence            446899999999999999999999876533322222222222  223321 2347899999998754321          


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc-cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK-KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                       +..+...+|++|+|+|+.++.+..  ....++..+... ....|+++|+||+|+........+         ..+.+..
T Consensus        91 -~~~~~~~~d~vi~v~D~~~~~s~~--~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~---------~~~~~~~  158 (193)
T 2oil_A           91 -TSAYYRGAVGALLVFDLTKHQTYA--VVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTE---------EARMFAE  158 (193)
T ss_dssp             -HHHHHTTCCEEEEEEETTCHHHHH--THHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHH---------HHHHHHH
T ss_pred             -hHHHhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHH---------HHHHHHH
Confidence             112345779999999997432211  122333333221 134789999999998654311111         1344445


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ..+..++.      .|+.++.+++++++.|.+.+.++
T Consensus       159 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~~  189 (193)
T 2oil_A          159 NNGLLFLE------TSALDSTNVELAFETVLKEIFAK  189 (193)
T ss_dssp             HTTCEEEE------ECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HcCCEEEE------EeCCCCCCHHHHHHHHHHHHHHH
Confidence            55544433      34556789999999998776553

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.80  E-value=5.1e-18  Score=127.27  Aligned_cols=163  Identities=13%  Similarity=0.105  Sum_probs=105.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .+.++|+++|.+|+|||||+|++++.. ...    ...|.......+.+ ++..+.+|||||..           .+...
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~----~~~t~~~~~~~~~~-~~~~~~~~Dt~G~~-----------~~~~~   78 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDT----ISPTLGFNIKTLEH-RGFKLNIWDVGGQK-----------SLRSY   78 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSS----CCCCSSEEEEEEEE-TTEEEEEEEECCSH-----------HHHTT
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCc----ccccCccceEEEEE-CCEEEEEEECCCCH-----------hHHHH
Confidence            567999999999999999999999877 211    12233344555666 78899999999964           23344


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      +..+...+|++++|+|+.++.+-.  ....++.+....  ....|+++|+||+|+....  ..++..+.     +.  +.
T Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~-----~~--~~  147 (186)
T 1ksh_A           79 WRNYFESTDGLIWVVDSADRQRMQ--DCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEA-----LE--LD  147 (186)
T ss_dssp             GGGGCTTCSEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHH-----TT--GG
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHH--HHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC--CHHHHHHH-----hC--hh
Confidence            456678899999999997543322  222333333322  1347999999999987653  33322221     00  01


Q ss_pred             HcC-CcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          175 LCD-NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       175 ~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ... ..+..    ...|+.++.+++++++.|.+.+.++
T Consensus       148 ~~~~~~~~~----~~~Sa~~~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          148 SIRSHHWRI----QGCSAVTGEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             GCCSSCEEE----EECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             hccCCceEE----EEeeCCCCCCHHHHHHHHHHHHHhc
Confidence            111 12222    2446667799999999999888765

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.80  E-value=1.9e-18  Score=130.32  Aligned_cols=165  Identities=15%  Similarity=0.088  Sum_probs=100.4

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEI   93 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~   93 (225)
                      ....++|+|+|.+|+|||||+|+|++........  +..+.......+.+ ++  ..+.||||||........       
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~-------   87 (191)
T 2a5j_A           18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMVNI-DGKQIKLQIWDTAGQESFRSIT-------   87 (191)
T ss_dssp             TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEE-TTEEEEEEEECCTTGGGTSCCC-------
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CcccceeEEEEEEE-CCEEEEEEEEECCCchhhhhhH-------
Confidence            4567899999999999999999999776432221  22222333334444 44  478999999976543221       


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI  172 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (225)
                          ..+...+|++|+|+|+.++.+... ..++..+.....  ...|+++|+||+|+........++         ..++
T Consensus        88 ----~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~~~v~~~~---------~~~~  152 (191)
T 2a5j_A           88 ----RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS--SNMVIMLIGNKSDLESRRDVKREE---------GEAF  152 (191)
T ss_dssp             ----HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHH---------HHHH
T ss_pred             ----HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCCccccCHHH---------HHHH
Confidence                123457899999999974322221 223334433222  247999999999986432111111         3444


Q ss_pred             HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          173 LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ....+..++.      .|+.++.+++++++.|.+.+.++
T Consensus       153 ~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~~  185 (191)
T 2a5j_A          153 AREHGLIFME------TSAKTACNVEEAFINTAKEIYRK  185 (191)
T ss_dssp             HHHHTCEEEE------ECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHcCCEEEE------EeCCCCCCHHHHHHHHHHHHHHH
Confidence            4555554433      34556689999999988766543

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.80  E-value=6.3e-18  Score=126.76  Aligned_cols=162  Identities=19%  Similarity=0.186  Sum_probs=99.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ..++|+++|.+|+|||||+|+|++......   ..+++.........+ ++.  .+.+|||||..+......        
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~--------   70 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDE---YDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMRD--------   70 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCC---CCTTCCEEEEEEEEE-TTEEEEEEEEECCCC---CTTHH--------
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCC---CCCCchheEEEEEEE-CCcEEEEEEEECCCcHHHHHHHH--------
Confidence            468999999999999999999997764222   223333333344444 454  477899999765432111        


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                         .+...+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+....  ...+.        ..++..
T Consensus        71 ---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~--~~~~~--------~~~~~~  136 (189)
T 4dsu_A           71 ---QYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPSRT--VDTKQ--------AQDLAR  136 (189)
T ss_dssp             ---HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSSCS--SCHHH--------HHHHHH
T ss_pred             ---HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCcccc--cCHHH--------HHHHHH
Confidence               12234699999999974322222 223333433221 2347999999999986432  11111        344555


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ..+.+++.      .|+.++.+++++++.|.+.+.+.
T Consensus       137 ~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~~  167 (189)
T 4dsu_A          137 SYGIPFIE------TSAKTRQGVDDAFYTLVREIRKH  167 (189)
T ss_dssp             HHTCCEEE------CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HcCCeEEE------EeCCCCCCHHHHHHHHHHHHHHh
Confidence            55554433      35566789999999998877654

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.79  E-value=1.5e-18  Score=130.61  Aligned_cols=165  Identities=16%  Similarity=0.101  Sum_probs=101.6

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ..+.++|+|+|.+|+|||||+|+|++......    ...|.......+.. .+..+.||||||..+           +..
T Consensus        19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~   82 (188)
T 1zd9_A           19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNED----MIPTVGFNMRKITK-GNVTIKLWDIGGQPR-----------FRS   82 (188)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCS----CCCCCSEEEEEEEE-TTEEEEEEEECCSHH-----------HHT
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHHcCCCCCc----cCCCCceeEEEEEe-CCEEEEEEECCCCHh-----------HHH
Confidence            35679999999999999999999997664311    12233334444555 788999999999642           222


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                      .+..+...+|++|+|+|+.+..+..  ....++......  ....|+++|+||+|+....  ..++.... ..      .
T Consensus        83 ~~~~~~~~~d~ii~v~D~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~-~~------~  151 (188)
T 1zd9_A           83 MWERYCRGVSAIVYMVDAADQEKIE--ASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEK-MN------L  151 (188)
T ss_dssp             THHHHHTTCSEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHH-TT------G
T ss_pred             HHHHHHccCCEEEEEEECCCHHHHH--HHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHH-hC------h
Confidence            3334456789999999997442222  233344443322  1347999999999987543  22222222 00      0


Q ss_pred             HHcC-CcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          174 QLCD-NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       174 ~~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      .... ..+..    ...|+.++.+++++++.|.+.+.++
T Consensus       152 ~~~~~~~~~~----~~~SA~~g~gv~~l~~~l~~~~~~~  186 (188)
T 1zd9_A          152 SAIQDREICC----YSISCKEKDNIDITLQWLIQHSKSR  186 (188)
T ss_dssp             GGCCSSCEEE----EECCTTTCTTHHHHHHHHHHTCC--
T ss_pred             hhhccCCeeE----EEEECCCCCCHHHHHHHHHHHHHhh
Confidence            0011 11222    2456677899999999998766543

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.79  E-value=1.8e-18  Score=127.55  Aligned_cols=162  Identities=15%  Similarity=0.240  Sum_probs=98.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      ..++|+++|++|+|||||+|+|.+......  ..++.|.......+.+ ++..+.+|||||+........  .+.+....
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~--~~~~~~~~   76 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENVYIG--NWPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSI--DEIIARDY   76 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEEE-TTEEEEEEECCCCSCSSSSSH--HHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCeecc--CCCCcceeeeEEEEEE-CCcEEEEEECCCcccCCCcch--hHHHHHHH
Confidence            357899999999999999999998764221  2334455544455566 678999999999886542221  11222111


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      .. ...+|++++|+|+.+ . .   ....++.+....  ..|+++|.||+|+....  ..        .....++.+..+
T Consensus        77 ~~-~~~~~~~i~v~D~~~-~-~---~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~--~~--------~~~~~~~~~~~~  138 (165)
T 2wji_A           77 II-NEKPDLVVNIVDATA-L-E---RNLYLTLQLMEM--GANLLLALNKMDLAKSL--GI--------EIDVDKLEKILG  138 (165)
T ss_dssp             HH-HHCCSEEEEEEETTC-H-H---HHHHHHHHHHHT--TCCEEEEEECHHHHHHT--TC--------CCCHHHHHHHHT
T ss_pred             Hh-cCCCCEEEEEecCCc-h-h---HhHHHHHHHHhc--CCCEEEEEEchHhcccc--Ch--------hhHHHHHHHHhC
Confidence            11 125799999999873 2 1   122233332222  47999999999964321  10        111344444445


Q ss_pred             CcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                      .++      ...||+++.+++++++.+.+.+
T Consensus       139 ~~~------~~~SA~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          139 VKV------VPLSAAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             SCE------EECBGGGTBSHHHHHHHHHHHT
T ss_pred             CCE------EEEEcCCCCCHHHHHHHHHHHh
Confidence            433      2456778899999999997654

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.79  E-value=2.6e-18  Score=130.71  Aligned_cols=163  Identities=12%  Similarity=0.069  Sum_probs=100.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ..++|+|+|.+|+|||||+|+|++........  +..+.......+... ....+.||||||....           ...
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----------~~~   73 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFV--STVGIDFKVKTIYRNDKRIKLQIWDTAGLERY-----------RTI   73 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCC--CCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-----------HHH
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcC--CccceeEEEEEEEECCeEEEEEEEECCCchhh-----------cch
Confidence            45899999999999999999999877432222  222222323333331 1348999999997532           223


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      +..+...+|++|+|+|+.++.+... ..++..+.....  ...|+++|+||+|+........+         ...++.+.
T Consensus        74 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~---------~~~~~~~~  142 (203)
T 1zbd_A           74 TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVLLVGNKCDMEDERVVSSE---------RGRQLADH  142 (203)
T ss_dssp             HHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--SSCEEEEEEECTTCTTSCCSCHH---------HHHHHHHH
T ss_pred             HHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCcccccCHH---------HHHHHHHH
Confidence            3456668899999999974322111 223333333221  24799999999998654311111         13445555


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      .+.+++      ..|+.++.+++++++.|.+.+.+
T Consensus       143 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~  171 (203)
T 1zbd_A          143 LGFEFF------EASAKDNINVKQTFERLVDVICE  171 (203)
T ss_dssp             HTCEEE------ECBTTTTBSSHHHHHHHHHHHHH
T ss_pred             CCCeEE------EEECCCCCCHHHHHHHHHHHHHH
Confidence            555433      33555668888888888776654

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.79  E-value=1.9e-18  Score=137.69  Aligned_cols=168  Identities=18%  Similarity=0.197  Sum_probs=111.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      +.++|+++|++|+|||||+|+|++... .. ...++.|.......+.+ .+..+.+|||||+.+.......  +.+... 
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-~~-~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~--~~~~~~-   75 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQ-HV-GNWPGVTVEKKEGIMEY-REKEFLVVDLPGIYSLTAHSID--ELIARN-   75 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCE-EE-EECTTSSCEEEEEEEEE-TTEEEEEEECCCCSCCCSSCHH--HHHHHH-
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCc-cc-CCCCCeEEEeeEEEEEE-CCceEEEEeCCCccccccCCHH--HHHHHH-
Confidence            458999999999999999999999875 22 23566777777777777 7888999999999876543221  111111 


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      ......+|++++|+|+.. . .   +.+.+..+.... ...|+++|+||+|.....          ........+.+..+
T Consensus        76 ~~~~~~~d~vi~v~D~~~-~-~---~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~----------~~~~~~~~l~~~lg  139 (271)
T 3k53_A           76 FILDGNADVIVDIVDSTC-L-M---RNLFLTLELFEM-EVKNIILVLNKFDLLKKK----------GAKIDIKKMRKELG  139 (271)
T ss_dssp             HHHTTCCSEEEEEEEGGG-H-H---HHHHHHHHHHHT-TCCSEEEEEECHHHHHHH----------TCCCCHHHHHHHHS
T ss_pred             hhhccCCcEEEEEecCCc-c-h---hhHHHHHHHHhc-CCCCEEEEEEChhcCccc----------ccHHHHHHHHHHcC
Confidence            122357899999999973 2 1   222222232211 117999999999964321          01112445555556


Q ss_pred             CcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158          178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG  213 (225)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~  213 (225)
                      .+++      +.|+..+.+++++++.+.+.......
T Consensus       140 ~~~~------~~Sa~~g~gi~~l~~~i~~~~~~~~~  169 (271)
T 3k53_A          140 VPVI------PTNAKKGEGVEELKRMIALMAEGKVT  169 (271)
T ss_dssp             SCEE------ECBGGGTBTHHHHHHHHHHHHHTCCC
T ss_pred             CcEE------EEEeCCCCCHHHHHHHHHHHHhcccc
Confidence            5443      45666778999999999998876543

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.79  E-value=3.3e-18  Score=135.31  Aligned_cols=165  Identities=19%  Similarity=0.199  Sum_probs=109.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .+.++|+|+|.+|+|||||+|+|++.... . ...++.|.......+.. .+..+.||||||+........  .+.+...
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~-~-~~~pg~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~--~e~v~~~   77 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQY-V-ANWPGVTVEKKEGVFTY-KGYTINLIDLPGTYSLGYSSI--DEKIARD   77 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEE-E-EECTTSCCEEEEEEEEE-TTEEEEEEECCCCSSCCSSSH--HHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCc-c-cCCCCceEEEEEEEEEE-CCeEEEEEECCCcCccCCCCH--HHHHHHH
Confidence            34689999999999999999999997753 2 23457777777767776 678999999999987653321  1122211


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      .. ....+|++++|+|+.. +. ..   +.++.++..  ...|+++|+||+|.....  .        ......++.+..
T Consensus        78 ~~-~~~~~d~ii~V~D~t~-~~-~~---~~~~~~l~~--~~~pvilv~NK~Dl~~~~--~--------i~~~~~~l~~~l  139 (258)
T 3a1s_A           78 YL-LKGDADLVILVADSVN-PE-QS---LYLLLEILE--MEKKVILAMTAIDEAKKT--G--------MKIDRYELQKHL  139 (258)
T ss_dssp             HH-HHSCCSEEEEEEETTS-CH-HH---HHHHHHHHT--TTCCEEEEEECHHHHHHT--T--------CCBCHHHHHHHH
T ss_pred             HH-hhcCCCEEEEEeCCCc-hh-hH---HHHHHHHHh--cCCCEEEEEECcCCCCcc--c--------hHHHHHHHHHHc
Confidence            11 1147899999999973 32 12   223333322  248999999999965332  1        111245555555


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      +.+++      +.|+.++.++++|++.+.+..+.
T Consensus       140 g~~vi------~~SA~~g~gi~el~~~i~~~~~~  167 (258)
T 3a1s_A          140 GIPVV------FTSSVTGEGLEELKEKIVEYAQK  167 (258)
T ss_dssp             CSCEE------ECCTTTCTTHHHHHHHHHHHHHS
T ss_pred             CCCEE------EEEeeCCcCHHHHHHHHHHHhhc
Confidence            65443      34556679999999999988763

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.79  E-value=6.5e-18  Score=128.84  Aligned_cols=164  Identities=16%  Similarity=0.135  Sum_probs=104.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ...++|+|+|.+|+|||||+|+|++......  ..+..+.......+.+ ++  ..+.||||||.......         
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~---------   73 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTND--YISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRTI---------   73 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTT--CCCSSCCCEEEEEEEE-TTEEEEEEEECCTTTTTTTCC---------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCcccceeEEEEEEE-CCEEEEEEEEeCCChHHHHHH---------
Confidence            4468999999999999999999998764322  2233333344444555 44  37999999997654322         


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                        +..+...+|++|+|+|+.++.+... ..++..+.....  ...|+++|+||+|+........++         ..++.
T Consensus        74 --~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~  140 (206)
T 2bcg_Y           74 --TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT--STVLKLLVGNKCDLKDKRVVEYDV---------AKEFA  140 (206)
T ss_dssp             --CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTCCSCHHH---------HHHHH
T ss_pred             --HHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccccccCHHH---------HHHHH
Confidence              2245668899999999974432222 223334433322  247899999999987543111111         33444


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ...+.+++      ..|+..+.+++++++.|.+.+.+.
T Consensus       141 ~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~i~~~  172 (206)
T 2bcg_Y          141 DANKMPFL------ETSALDSTNVEDAFLTMARQIKES  172 (206)
T ss_dssp             HHTTCCEE------ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHcCCeEE------EEeCCCCCCHHHHHHHHHHHHHHH
Confidence            45554433      335566789999999998887664

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.79  E-value=2.6e-19  Score=136.06  Aligned_cols=170  Identities=14%  Similarity=0.090  Sum_probs=94.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEI   93 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~   93 (225)
                      ....++|+|+|.+|+|||||+|+|++...........+  .......+.+ ++  ..+.||||||.....       ..+
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-------~~~   94 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLG--VDFQMKTLIV-DGERTVLQLWDTAGQERFR-------SIA   94 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHHCCCC------------CEEEEEEE-TTEEEEEEEEECTTCTTCH-------HHH
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCcc--ceeEEEEEEE-CCEEEEEEEEECCCCcchh-------hhH
Confidence            35679999999999999999999997764222111112  2222233344 33  469999999976431       111


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI  172 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (225)
                      .    .+...+|++|+|+|+.++.+... ..++..+.....  ...|+++|+||+|+....  . .+...........++
T Consensus        95 ~----~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~~~--~-~~~~~~v~~~~~~~~  165 (199)
T 2p5s_A           95 K----SYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAH--ETVPIMLVGNKADIRDTA--A-TEGQKCVPGHFGEKL  165 (199)
T ss_dssp             H----HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGHHHH--H-HTTCCCCCHHHHHHH
T ss_pred             H----HHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCCEEEEEECccccccc--c-cccccccCHHHHHHH
Confidence            1    22335699999999974432222 223444444322  247999999999975211  0 000000001113344


Q ss_pred             HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          173 LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      ....+..++      ..|+..+.++++++..|.+.+.+
T Consensus       166 ~~~~~~~~~------~~SA~~g~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          166 AMTYGALFC------ETSAKDGSNIVEAVLHLAREVKK  197 (199)
T ss_dssp             HHHHTCEEE------ECCTTTCTTHHHHHHHHHHHHTC
T ss_pred             HHHcCCeEE------EeeCCCCCCHHHHHHHHHHHHHh
Confidence            445554433      34556678999999999877653

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.79  E-value=1.5e-18  Score=127.90  Aligned_cols=162  Identities=12%  Similarity=0.151  Sum_probs=100.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ..++|+++|.+|+|||||+|+|++......  ..+..+.......+.+ ++  ..+.+|||||........         
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~---------   69 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPS--FITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTIT---------   69 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCCC---------
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCC--CCCccceeEEEEEEEE-CCEEEEEEEEeCCCChhhhhhH---------
Confidence            358999999999999999999997764222  2223333344444555 33  378999999976443221         


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                        ..+...+|++++|+|+.++.+... ..++..+.....  ...|+++|+||+|+.... ...++         ..++.+
T Consensus        70 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~-~~~~~---------~~~~~~  135 (170)
T 1g16_A           70 --TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDMETRV-VTADQ---------GEALAK  135 (170)
T ss_dssp             --HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCTTCC-SCHHH---------HHHHHH
T ss_pred             --HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCCcCc-cCHHH---------HHHHHH
Confidence              123457799999999974322211 234444444322  247999999999984321 11111         334445


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ..+..++      ..|+.++.+++++++.|.+.+.++
T Consensus       136 ~~~~~~~------~~Sa~~~~gv~~l~~~l~~~~~~~  166 (170)
T 1g16_A          136 ELGIPFI------ESSAKNDDNVNEIFFTLAKLIQEK  166 (170)
T ss_dssp             HHTCCEE------ECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             HcCCeEE------EEECCCCCCHHHHHHHHHHHHHHH
Confidence            5554433      345566789999999999888765

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.79  E-value=1.4e-18  Score=130.98  Aligned_cols=164  Identities=13%  Similarity=0.077  Sum_probs=101.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ..+.++|+|+|.+|+|||||+|+|++...+...   ...|.......+.+ ++..+.||||||.....           .
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~-----------~   82 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN---ILPTIGFSIEKFKS-SSLSFTVFDMSGQGRYR-----------N   82 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSS---CCCCSSEEEEEEEC-SSCEEEEEEECCSTTTG-----------G
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCC---cCCccceeEEEEEE-CCEEEEEEECCCCHHHH-----------H
Confidence            466799999999999999999999987733222   22344455566666 67899999999976442           2


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc----ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK----ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE  171 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~  171 (225)
                      .+..+...+|++|+|+|+.++.+.  .....++.......    ...|+++|+||+|+....  ..++.         .+
T Consensus        83 ~~~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~---------~~  149 (190)
T 2h57_A           83 LWEHYYKEGQAIIFVIDSSDRLRM--VVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAV--TSVKV---------SQ  149 (190)
T ss_dssp             GGGGGGGGCSEEEEEEETTCHHHH--HHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCC--CHHHH---------HH
T ss_pred             HHHHHHhcCCEEEEEEECCCHHHH--HHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCC--CHHHH---------HH
Confidence            223455678999999999743211  12223333332221    247999999999986542  22222         22


Q ss_pred             HHH--HcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          172 ILQ--LCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       172 ~~~--~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      .+.  .... .+..    ...|+.++.+++++++.|.+.+++.
T Consensus       150 ~~~~~~~~~~~~~~----~~~Sa~~~~gi~~l~~~l~~~i~~~  188 (190)
T 2h57_A          150 LLCLENIKDKPWHI----CASDAIKGEGLQEGVDWLQDQIQTV  188 (190)
T ss_dssp             HHTGGGCCSSCEEE----EECBTTTTBTHHHHHHHHHHHC---
T ss_pred             HhChhhccCCceEE----EEccCCCCcCHHHHHHHHHHHHHHh
Confidence            221  1111 1222    2346677799999999998876543

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.79  E-value=7.4e-18  Score=126.22  Aligned_cols=164  Identities=15%  Similarity=0.126  Sum_probs=104.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ...++|+|+|.+|+|||||+|+|++......  ..+..+.......+.+ ++  ..+.+|||||....           .
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~   73 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDD--SNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQERF-----------R   73 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTT--CCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------H
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHHH-----------H
Confidence            4568999999999999999999997764322  2233333444444555 44  48999999996532           2


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                      ..+..+...+|++|+|+|+.++.+... ..++..+.....  ...|+++|+||+|+.........+         ..++.
T Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~  142 (186)
T 2bme_A           74 SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS--QNIVIILCGNKKDLDADREVTFLE---------ASRFA  142 (186)
T ss_dssp             HHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHH---------HHHHH
T ss_pred             HHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHHH---------HHHHH
Confidence            334566778999999999974322221 223333444322  247999999999986432111111         33444


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ...+..++      ..|+.++.+++++++.+.+.+.+.
T Consensus       143 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~~  174 (186)
T 2bme_A          143 QENELMFL------ETSALTGENVEEAFVQCARKILNK  174 (186)
T ss_dssp             HHTTCEEE------ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHcCCEEE------EecCCCCCCHHHHHHHHHHHHHHH
Confidence            44454333      235566789999999988776553

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.79  E-value=2.2e-18  Score=131.92  Aligned_cols=165  Identities=13%  Similarity=0.152  Sum_probs=101.9

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHH
Q 036158           15 PSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKE   92 (225)
Q Consensus        15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~   92 (225)
                      +....++|+|+|.+|+|||||+|+|++......  ..+..+.......+.+ ++  ..+.||||||.......       
T Consensus        16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~-------   85 (213)
T 3cph_A           16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPS--FITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTI-------   85 (213)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHCCCCCS--SSCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTCC-------
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcc--cCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHH-------
Confidence            345679999999999999999999997664222  2233344444455555 45  47999999997644221       


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158           93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE  171 (225)
Q Consensus        93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~  171 (225)
                          +..+...+|++|+|+|+.++.+... ..++..+......  ..|+++|+||+|+.... ...++         ..+
T Consensus        86 ----~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~~-~~~~~---------~~~  149 (213)
T 3cph_A           86 ----TTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDMETRV-VTADQ---------GEA  149 (213)
T ss_dssp             ----CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTT--CSEEEEEEECTTCSSCC-SCHHH---------HHH
T ss_pred             ----HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCcccc-cCHHH---------HHH
Confidence                1223457899999999974322211 2344444443322  37999999999984321 11111         334


Q ss_pred             HHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          172 ILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      +....+.+++      ..|+.++.+++++++.|.+.+.+.
T Consensus       150 ~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~~  183 (213)
T 3cph_A          150 LAKELGIPFI------ESSAKNDDNVNEIFFTLAKLIQEK  183 (213)
T ss_dssp             HHHHHTCCEE------ECBTTTTBSSHHHHHHHHHHHHHH
T ss_pred             HHHHcCCEEE------EEeCCCCCCHHHHHHHHHHHHHHH
Confidence            4444554433      345566788999999988777653

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.79  E-value=3.4e-19  Score=131.33  Aligned_cols=163  Identities=17%  Similarity=0.119  Sum_probs=97.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      +.++|+++|.+|+|||||+|+|++.......  .+..+.......+.+ ++  ..+.+|||||.....           .
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~-----------~   67 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENK--EPTIGAAFLTQRVTI-NEHTVKFEIWDTAGQERFA-----------S   67 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTC--CCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGG-----------G
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEEEEE-CCEEEEEEEEECCCChhhh-----------h
Confidence            3589999999999999999999977643222  222223333333444 33  379999999965321           1


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      .+..+...+|++++|+|+.++.+..+ ..++..+.....  ...|+++|+||+|+.....  ..+..    .....++..
T Consensus        68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~--~~~v~----~~~~~~~~~  139 (170)
T 1ek0_A           68 LAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS--KDIIIALVGNKIDXLQEGG--ERKVA----REEGEKLAE  139 (170)
T ss_dssp             GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGSSC--CCCSC----HHHHHHHHH
T ss_pred             hhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCcccccc--ccCCC----HHHHHHHHH
Confidence            12234457799999999974422222 223333333322  2478999999999875421  00000    011234444


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                      ..+..++      ..|+.++.+++++++.|.+.+
T Consensus       140 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i  167 (170)
T 1ek0_A          140 EKGLLFF------ETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             HHTCEEE------ECCTTTCTTHHHHHHHHHTTS
T ss_pred             HcCCEEE------EEeCCCCCCHHHHHHHHHHHH
Confidence            4454433      334556789999999987644

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.79  E-value=9.2e-18  Score=127.72  Aligned_cols=165  Identities=18%  Similarity=0.156  Sum_probs=101.2

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHH
Q 036158           15 PSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKE   92 (225)
Q Consensus        15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~   92 (225)
                      +..+.++|+|+|.+|+|||||+|+|++......   ..+++.......+.+ ++.  .+.||||||..+..    ..   
T Consensus        10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~----~~---   78 (206)
T 2bov_A           10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVED---YEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDYA----AI---   78 (206)
T ss_dssp             -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTT---CCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCCH----HH---
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCC---CCCccceEEEEEEEE-CCEEEEEEEEcCCChhhhH----HH---
Confidence            345679999999999999999999997764221   222222333334444 443  79999999976541    11   


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158           93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE  171 (225)
Q Consensus        93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~  171 (225)
                      .    ..+...+|++++|+|+++..+... ..++..+..... ....|+++|+||+|+........++         ..+
T Consensus        79 ~----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~---------~~~  144 (206)
T 2bov_A           79 R----DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEE---------AKN  144 (206)
T ss_dssp             H----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGGGCCSCHHH---------HHH
T ss_pred             H----HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCccccccccHHH---------HHH
Confidence            1    122335699999999974322111 223334443322 1247999999999986543112221         344


Q ss_pred             HHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          172 ILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      +.+..+..++.      .|+.++.+++++++.|.+.+.+
T Consensus       145 ~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~i~~  177 (206)
T 2bov_A          145 RAEQWNVNYVE------TSAKTRANVDKVFFDLMREIRA  177 (206)
T ss_dssp             HHHHHTCEEEE------ECTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHhCCeEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence            55555554433      3445668999999999877755

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.79  E-value=7.7e-19  Score=132.74  Aligned_cols=164  Identities=13%  Similarity=0.172  Sum_probs=98.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEI   93 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~   93 (225)
                      ....++|+|+|.+|+|||||+|+|++......  ..+..+.......+.+ ++  ..+.||||||....       ....
T Consensus        23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~-------~~~~   92 (192)
T 2il1_A           23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEA--CKSTVGVDFKIKTVEL-RGKKIRLQIWDTAGQERF-------NSIT   92 (192)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEEE-TTEEEEEEEEEECCSGGG-------HHHH
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHhcCCCCcC--CCCccceeEEEEEEEE-CCeEEEEEEEeCCCcHHH-------HHHH
Confidence            35578999999999999999999998764322  1233334444445555 44  37899999996532       1112


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI  172 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (225)
                          ..+...+|++|+|+|+.++.+..+ ..++..+.....  ...|+++|+||+|+........++         .+++
T Consensus        93 ----~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilV~NK~Dl~~~~~v~~~~---------~~~~  157 (192)
T 2il1_A           93 ----SAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS--EDAELLLVGNKLDCETDREITRQQ---------GEKF  157 (192)
T ss_dssp             ----HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHH---------HHHH
T ss_pred             ----HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHHH---------HHHH
Confidence                223345699999999975433222 223344444322  247999999999976443111111         2333


Q ss_pred             HHHc-CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          173 LQLC-DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       173 ~~~~-~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      .+.. +..++      ..|+.++.+++++++.|.+.+.+
T Consensus       158 ~~~~~~~~~~------~~SA~~g~gi~~l~~~l~~~i~~  190 (192)
T 2il1_A          158 AQQITGMRFC------EASAKDNFNVDEIFLKLVDDILK  190 (192)
T ss_dssp             HHTSTTCEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHhcCCCeEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence            3332 22222      34566779999999999877654

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.79  E-value=1.1e-18  Score=131.66  Aligned_cols=166  Identities=13%  Similarity=0.073  Sum_probs=101.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ..+.++|+|+|.+|+|||||+|+|++.......  .+..+.......+.+. ....+.||||||.......         
T Consensus        12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---------   80 (195)
T 1x3s_A           12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPEL--AATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL---------   80 (195)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTC--CCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCS---------
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHcCCCCccC--CCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhh---------
Confidence            345689999999999999999999977643221  2222233333334441 1247999999997644221         


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI  172 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (225)
                        +..+...+|++|+|+|+.++.+..  ....++.++...  ....|+++|+||+|+.... ...++         ..++
T Consensus        81 --~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~---------~~~~  146 (195)
T 1x3s_A           81 --TPSYYRGAQGVILVYDVTRRDTFV--KLDNWLNELETYCTRNDIVNMLVGNKIDKENRE-VDRNE---------GLKF  146 (195)
T ss_dssp             --HHHHHTTCCEEEEEEETTCHHHHH--THHHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-SCHHH---------HHHH
T ss_pred             --hHHHhccCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCcCCCcEEEEEECCcCcccc-cCHHH---------HHHH
Confidence              112345779999999997432221  222333433221  1247899999999984332 11111         3344


Q ss_pred             HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          173 LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                      ....+..++      ..|+.++.+++++++.|.+.+.+..
T Consensus       147 ~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~~~  180 (195)
T 1x3s_A          147 ARKHSMLFI------EASAKTCDGVQCAFEELVEKIIQTP  180 (195)
T ss_dssp             HHHTTCEEE------ECCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred             HHHcCCEEE------EecCCCCCCHHHHHHHHHHHHHhhh
Confidence            445554433      3355667899999999998887653

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.79  E-value=1.1e-17  Score=125.88  Aligned_cols=166  Identities=12%  Similarity=0.068  Sum_probs=102.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEE-EEEEEeeC----------CceEEEEeCCCCCCCCCC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCE-MQRTMLKD----------GQVVNVIDTPGLFDSSAD   85 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~~----------~~~~~liDtPG~~~~~~~   85 (225)
                      ...++|+|+|.+|+|||||+|+|++.......  .+..+.... ...+...+          ...+.||||||....   
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---   83 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKF--ITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF---   83 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSC--CCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG---
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCc--ccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH---
Confidence            45689999999999999999999976642221  112222222 22334312          248999999997432   


Q ss_pred             cHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhc
Q 036158           86 SEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRE  164 (225)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~  164 (225)
                              ...+..+...+|++|+|+|+.++.+... ..++..+..... ....|+++|+||+|+........+      
T Consensus        84 --------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~------  148 (195)
T 3bc1_A           84 --------RSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLEDQRAVKEE------  148 (195)
T ss_dssp             --------HHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGGGCCSCHH------
T ss_pred             --------HHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccCHH------
Confidence                    2334456778899999999974432222 233333433221 124799999999998653211111      


Q ss_pred             CCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          165 CPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                         ..+++....+.+++      ..|+..+.+++++++.|.+.+.+.
T Consensus       149 ---~~~~~~~~~~~~~~------~~Sa~~~~~v~~l~~~l~~~~~~~  186 (195)
T 3bc1_A          149 ---EARELAEKYGIPYF------ETSAANGTNISHAIEMLLDLIMKR  186 (195)
T ss_dssp             ---HHHHHHHHHTCCEE------ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHcCCCEE------EEECCCCCCHHHHHHHHHHHHHHH
Confidence               13445555554443      345566789999999998877553

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.79  E-value=5.7e-18  Score=125.45  Aligned_cols=166  Identities=19%  Similarity=0.147  Sum_probs=95.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ...++|+++|.+|+|||||+|+|.+...... ....+.+...  ..+.+ ++.  .+.+|||||.....         ..
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~--~~~~~-~~~~~~~~~~D~~g~~~~~---------~~   68 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYE--RTLTV-DGEDTTLVVVDTWEAEKLD---------KS   68 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEE--EEEEE-TTEEEEEEEECCC----------------C
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeE--EEEEE-CCEEEEEEEEecCCCCccc---------hh
Confidence            3568999999999999999999998775333 2233333322  33444 443  78999999976421         01


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                      .....+...+|++++|+|++++.+... ..++..+.... .....|+++|+||+|+........++         .+.+.
T Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~piilv~NK~Dl~~~~~v~~~~---------~~~~~  138 (175)
T 2nzj_A           69 WSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTH-QADHVPIILVGNKADLARCREVSVEE---------GRACA  138 (175)
T ss_dssp             HHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSCHHH---------HHHHH
T ss_pred             hhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-ccCCCCEEEEEEChhhccccccCHHH---------HHHHH
Confidence            112235667899999999974322222 12333333321 11247999999999987543112111         22333


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ...+..++      ..|+.++.+++++++.|.+.+.+.
T Consensus       139 ~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~~~  170 (175)
T 2nzj_A          139 VVFDCKFI------ETSATLQHNVAELFEGVVRQLRLR  170 (175)
T ss_dssp             HHHTSEEE------ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HHcCCeEE------EEecCCCCCHHHHHHHHHHHHHHh
Confidence            33443332      345667789999999998877654

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.79  E-value=9.6e-18  Score=126.18  Aligned_cols=166  Identities=17%  Similarity=0.159  Sum_probs=99.3

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHH
Q 036158           15 PSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKE   92 (225)
Q Consensus        15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~   92 (225)
                      +..+.++|+++|.+|+|||||+|+|++......   ...++.......+.+ ++.  .+.||||||..+.          
T Consensus        17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~----------   82 (190)
T 3con_A           17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDE---YDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEY----------   82 (190)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSC---CCTTCCEEEEEEEEE-TTEEEEEEEEECCC--------------
T ss_pred             cccceeEEEEECcCCCCHHHHHHHHHcCCCccc---cCCccceEEEEEEEE-CCEEEEEEEEECCChHHH----------
Confidence            345678999999999999999999997654222   222233333334444 443  5899999996533          


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158           93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE  171 (225)
Q Consensus        93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~  171 (225)
                       ......+...+|++++|+++.+..+..+ ..++..+..... ....|+++|+||+|+.... ...+         ..++
T Consensus        83 -~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~-~~~~---------~~~~  150 (190)
T 3con_A           83 -SAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDLPTRT-VDTK---------QAHE  150 (190)
T ss_dssp             --------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCCC-SCHH---------HHHH
T ss_pred             -HHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCcCCccc-CCHH---------HHHH
Confidence             2223345678899999999974432222 223334444322 1247999999999976532 1111         1344


Q ss_pred             HHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          172 ILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                      +.+..+.+++      ..|+.++.+++++++.|.+.+.+..
T Consensus       151 ~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~~~  185 (190)
T 3con_A          151 LAKSYGIPFI------ETSAKTRQGVEDAFYTLVREIRQYR  185 (190)
T ss_dssp             HHHHHTCCEE------ECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             HHHHcCCeEE------EEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            5555554433      3355667899999999988877654

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.79  E-value=1e-17  Score=127.24  Aligned_cols=186  Identities=16%  Similarity=0.064  Sum_probs=99.5

Q ss_pred             CCCcccCCCCCCCCCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCC
Q 036158            1 MGGRVIDADSKPTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPG   78 (225)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG   78 (225)
                      ||.+...............++|+++|.+|+|||||+|++++.... ..  ..+++.......+.+ ++.  .+.+|||||
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~-~~--~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G   77 (201)
T 2q3h_A            2 MGPGEPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYP-TE--YIPTAFDNFSAVVSV-DGRPVRLQLCDTAG   77 (201)
T ss_dssp             ------------------CEEEEEECSTTSSHHHHHHHHHC-----------CCSSEEEEEEEEE-TTEEEEEEEEECCC
T ss_pred             CCCCCCCcccccCCCCCcceEEEEECCCCCCHHHHHHHHHhCCCC-CC--CCCcccceeEEEEEE-CCEEEEEEEEECCC
Confidence            344444444444455677899999999999999999999987632 21  222222332333444 454  677999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCccc
Q 036158           79 LFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDET  156 (225)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~  156 (225)
                      .......           +..+...+|++|+|+|++++.+..+.  .++..+.....   ..|+++|.||+|+.... ..
T Consensus        78 ~~~~~~~-----------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~-~~  142 (201)
T 2q3h_A           78 QDEFDKL-----------RPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLREDV-KV  142 (201)
T ss_dssp             STTCSSS-----------GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGGGCH-HH
T ss_pred             CHHHHHH-----------hHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhhch-hh
Confidence            8765321           22456688999999999744332222  24444444322   47999999999986532 11


Q ss_pred             HHHHhh---h-cCCchHHHHHHHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          157 LEDYLG---R-ECPKPLKEILQLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       157 ~~~~~~---~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ...+..   . ........+....+. .+      ...|+.++.+++++++.|.+.+.+.
T Consensus       143 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------~~~Sa~~g~gi~~l~~~l~~~~~~~  196 (201)
T 2q3h_A          143 LIELDKCKEKPVPEEAAKLLAEEIKAASY------IECSALTQKNLKEVFDAAIVAGIQY  196 (201)
T ss_dssp             HHHHHTTTCCCCCHHHHHHHHHHHTCSEE------EECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             hhhhcccccccCCHHHHHHHHHhcCCcEE------EEEecCCCCCHHHHHHHHHHHHhcc
Confidence            111110   0 001113344444443 32      2345667799999999998777654

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.79  E-value=6.1e-19  Score=150.42  Aligned_cols=164  Identities=14%  Similarity=0.173  Sum_probs=91.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      .++|+++|.+|+|||||+|+|++.....+ ...+++|.+.....+.+ ++..+.||||||+.++...   ..........
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v-s~~~gtT~d~~~~~i~~-~g~~l~liDT~G~~~~~~~---ve~~gi~~~~  307 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQERAIV-SHMPGTTRDYIEECFIH-DKTMFRLTDTAGLREAGEE---IEHEGIRRSR  307 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC-------------------CEEEEE-TTEEEEEEC-----------------------
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCccc-CCCCCceEEEEEEEEEE-CCeEEEEEECCCCCcchhH---HHHHHHHHHH
Confidence            57899999999999999999998864333 23556777777677777 8889999999999754211   1111112234


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEEGA-AIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      .+...+|++++|+|+.++.+..+.. ...++.. +.   ..|+++|+||+|+....  ....  ++     +.+.   ..
T Consensus       308 ~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~-l~---~~piIvV~NK~Dl~~~~--~~~~--~~-----l~~~---~~  371 (476)
T 3gee_A          308 MKMAEADLILYLLDLGTERLDDELTEIRELKAA-HP---AAKFLTVANKLDRAANA--DALI--RA-----IADG---TG  371 (476)
T ss_dssp             CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHH-CT---TSEEEEEEECTTSCTTT--HHHH--HH-----HHHH---HT
T ss_pred             hhcccCCEEEEEEECCCCcchhhhHHHHHHHHh-cC---CCCEEEEEECcCCCCcc--chhH--HH-----HHhc---CC
Confidence            5677899999999998666653221 2223333 22   37999999999987654  2211  11     1111   01


Q ss_pred             CcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      .      .....|++++.++++|++.|.+.+.
T Consensus       372 ~------~~i~vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          372 T------EVIGISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             S------CEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred             C------ceEEEEECCCCCHHHHHHHHHHHHh
Confidence            1      2234577788999999999999887

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.79  E-value=1.6e-17  Score=124.15  Aligned_cols=167  Identities=25%  Similarity=0.205  Sum_probs=100.5

Q ss_pred             CCCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHH
Q 036158           13 TSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVS   90 (225)
Q Consensus        13 ~~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~   90 (225)
                      .....+.++|+|+|.+|+|||||+|+|++......   ...++.......... ++.  .+.+|||||.........   
T Consensus        12 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~---   84 (183)
T 3kkq_A           12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDD---YDPTIEDSYLKHTEI-DNQWAILDVLDTAGQEEFSAMRE---   84 (183)
T ss_dssp             --CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSC---CCTTCCEEEEEEEEE-TTEEEEEEEEECCSCGGGCSSHH---
T ss_pred             CccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCC---CCCCccceeEEEEEe-CCcEEEEEEEECCCchhhHHHHH---
Confidence            34456789999999999999999999997653222   122222222333444 454  466799999764432111   


Q ss_pred             HHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchH
Q 036158           91 KEIVKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPL  169 (225)
Q Consensus        91 ~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~  169 (225)
                              .+...+|++++|+|+.++.+... ..++..+..... ....|+++|+||+|+........++         .
T Consensus        85 --------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~---------~  146 (183)
T 3kkq_A           85 --------QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMHLRKVTRDQ---------G  146 (183)
T ss_dssp             --------HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-SSCCCEEEEEECTTCSTTCCSCHHH---------H
T ss_pred             --------HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCCchhccCcCHHH---------H
Confidence                    12234699999999974322211 223333333221 2347999999999986543112211         3


Q ss_pred             HHHHHHcCCcEEEeeCCCccccc-cHHHHHHHHHHHHHHHHH
Q 036158          170 KEILQLCDNRCVLFDNKTKDTAK-RTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~i~~~~~~  210 (225)
                      .++.+..+..++..      |+. ++.+++++++.|.+.+.+
T Consensus       147 ~~~~~~~~~~~~~~------Sa~~~~~~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          147 KEMATKYNIPYIET------SAKDPPLNVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHTCCEEEE------BCSSSCBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCeEEEe------ccCCCCCCHHHHHHHHHHHHhh
Confidence            44555556554443      344 568999999999887764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.78  E-value=8.4e-19  Score=148.77  Aligned_cols=186  Identities=17%  Similarity=0.215  Sum_probs=111.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH-H
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIV-K   95 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~-~   95 (225)
                      ...++|+++|++|+|||||+|+|++.....+ ...+++|.+.....+.+ ++..+.+|||||+........+..+.+. .
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v-~~~~gtT~d~~~~~i~~-~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~  255 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNKERALV-SPIPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNY  255 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEE-CCCC------CCEEEEE-TTEEEEESSCSCC-----------CCSCCH
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCCccccc-CCCCCCcCCceEEEEEE-CCEEEEEEECCCCccccccchhhHHHHHHH
Confidence            3468999999999999999999999875333 33556676666666777 7889999999998533211100000000 0


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      ....+...+|++++|+|+..+.+..+..+...+..     ...|+++|+||||+.+......+++...     +.+.+..
T Consensus       256 ~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~-----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~  325 (439)
T 1mky_A          256 RVVDSIEKADVVVIVLDATQGITRQDQRMAGLMER-----RGRASVVVFNKWDLVVHREKRYDEFTKL-----FREKLYF  325 (439)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-----TTCEEEEEEECGGGSTTGGGCHHHHHHH-----HHHHCGG
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCCCchhhHHHHHHHH-----HHHHhcc
Confidence            00112234699999999986777666555554443     2379999999999876532223333222     2222222


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCCCHH
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYTDE  219 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~~~~  219 (225)
                      ....     .....||.++.++++|++.+.+...+.....-+..
T Consensus       326 ~~~~-----~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~i~t~~  364 (439)
T 1mky_A          326 IDYS-----PLIFTSADKGWNIDRMIDAMNLAYASYTTKVPSSA  364 (439)
T ss_dssp             GTTS-----CEEECBTTTTBSHHHHHHHHHHHHHHHTCCCCHHH
T ss_pred             CCCC-----cEEEEECCCCCCHHHHHHHHHHHHHhhcccCCHHH
Confidence            2211     12345777889999999999999888766554433

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.78  E-value=1.4e-18  Score=129.81  Aligned_cols=161  Identities=16%  Similarity=0.127  Sum_probs=100.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ...++|+++|.+|+|||||+|++++...... ..    |.......+.+ ++..+.+|||||......           .
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~----t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~-----------~   78 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEVVTT-KP----TIGFNVETLSY-KNLKLNVWDLGGQTSIRP-----------Y   78 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEEE-CS----STTCCEEEEEE-TTEEEEEEEEC----CCT-----------T
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCcCcc-CC----cCccceEEEEE-CCEEEEEEECCCCHhHHH-----------H
Confidence            5679999999999999999999997765222 11    21122334555 678999999999875432           2


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      +..+...+|++++|+|+.++.+-.  ....++......  ....|+++|+||+|+....  ..++...         .+.
T Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~---------~~~  145 (183)
T 1moz_A           79 WRCYYADTAAVIFVVDSTDKDRMS--TASKELHLMLQEEELQDAALLVFANKQDQPGAL--SASEVSK---------ELN  145 (183)
T ss_dssp             GGGTTTTEEEEEEEEETTCTTTHH--HHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC--CHHHHHH---------HTT
T ss_pred             HHHHhccCCEEEEEEECCCHHHHH--HHHHHHHHHHcChhhCCCeEEEEEECCCCCCCC--CHHHHHH---------HhC
Confidence            234567889999999997543322  233444444332  2347999999999986542  2222211         111


Q ss_pred             Hc--C-CcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          175 LC--D-NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       175 ~~--~-~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ..  . ..+.    ....|+.++.+++++++.|.+.+.++
T Consensus       146 ~~~~~~~~~~----~~~~Sa~~~~gi~~l~~~l~~~~~~~  181 (183)
T 1moz_A          146 LVELKDRSWS----IVASSAIKGEGITEGLDWLIDVIKEE  181 (183)
T ss_dssp             TTTCCSSCEE----EEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             cccccCCceE----EEEccCCCCcCHHHHHHHHHHHHHhc
Confidence            11  1 1111    23456777899999999999887654

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.78  E-value=4.8e-18  Score=128.40  Aligned_cols=166  Identities=13%  Similarity=0.092  Sum_probs=104.6

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEI   93 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~   93 (225)
                      ....++|+++|.+|+|||||+|++++......   ...++.......+.. ++.  .+.+|||||.....          
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~----------   85 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTA---YVPTVFENFSHVMKY-KNEEFILHLWDTAGQEEYD----------   85 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSS---CCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGT----------
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCCCc---cCCeeeeeeEEEEEE-CCEEEEEEEEECCCcHHHH----------
Confidence            45679999999999999999999998764211   122222222223344 444  56999999965332          


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE  171 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~  171 (225)
                       .....+...+|++++|+|+.++.+..+  ..++..+....   ...|+++|.||+|+.........       .....+
T Consensus        86 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~-------~~~~~~  154 (194)
T 3reg_A           86 -RLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI---DTAKTVLVGLKVDLRKDGSDDVT-------KQEGDD  154 (194)
T ss_dssp             -TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTSEEEEEEECGGGCCTTTTCCC-------HHHHHH
T ss_pred             -HHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccCCCCccc-------HHHHHH
Confidence             233456778999999999985433222  23444444432   23799999999998753211100       111344


Q ss_pred             HHHHcCCc-EEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          172 ILQLCDNR-CVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       172 ~~~~~~~~-~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                      +.+..+.. ++      ..|+.++.+++++++.|.+.+.++.
T Consensus       155 ~~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~~~  190 (194)
T 3reg_A          155 LCQKLGCVAYI------EASSVAKIGLNEVFEKSVDCIFSNK  190 (194)
T ss_dssp             HHHHHTCSCEE------ECBTTTTBSHHHHHHHHHHHHHCSC
T ss_pred             HHHhcCCCEEE------EeecCCCCCHHHHHHHHHHHHHhcC
Confidence            55555544 33      3456677999999999998887654

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.78  E-value=5.2e-18  Score=129.17  Aligned_cols=166  Identities=16%  Similarity=0.145  Sum_probs=101.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ...++|+|+|.+|+|||||+|+|++......  ..+..+.......+.+ ++  ..+.||||||....           .
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~   92 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSER--QGSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQERF-----------R   92 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEE-TTEEEEEEEECCTTCGGG-----------H
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCCCCCC--CCCCcceEEEEEEEEE-CCEEEEEEEEECCCcHhH-----------H
Confidence            4468999999999999999999997664211  1122222333344455 44  48999999996532           1


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                      ..+..++..+|++|+|+|+.++.+... ..++..+.....  ...|+++|.||+|+........++         .+++.
T Consensus        93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~~~~v~~~~---------~~~~~  161 (201)
T 2hup_A           93 TITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG--SNIVQLLIGNKSDLSELREVSLAE---------AQSLA  161 (201)
T ss_dssp             HHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred             HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCccccccccCHHH---------HHHHH
Confidence            223344567899999999974322211 233344443321  247999999999986532111111         34455


Q ss_pred             HHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158          174 QLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG  213 (225)
Q Consensus       174 ~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~  213 (225)
                      ...+. .++      ..|+.++.+++++++.|.+.+.++..
T Consensus       162 ~~~~~~~~~------~~SA~~g~gi~~l~~~l~~~i~~~~~  196 (201)
T 2hup_A          162 EHYDILCAI------ETSAKDSSNVEEAFLRVATELIMRHG  196 (201)
T ss_dssp             HHTTCSEEE------ECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred             HHcCCCEEE------EEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence            55554 332      34556678999999999888776644

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.78  E-value=6.4e-18  Score=124.21  Aligned_cols=162  Identities=19%  Similarity=0.132  Sum_probs=88.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      .++|+++|.+|+|||||+|++.+...... ....+.+..   ....+. ....+.+|||||.....           ...
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~i~D~~g~~~~~-----------~~~   66 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTYD---RSIVVDGEEASLMVYDIWEQDGGR-----------WLP   66 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEEE---EEEEETTEEEEEEEEECC--------------------
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccceE---EEEEECCEEEEEEEEECCCCccch-----------hhh
Confidence            47999999999999999999998764322 222333332   122331 22378899999976432           222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      ..+...+|++++|+|++++.+... ..++..+.... .....|+++|.||+|+........++         ...+....
T Consensus        67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~~~~  136 (166)
T 3q72_A           67 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRAR-QTDDVPIILVGNKSDLVRSREVSVDE---------GRACAVVF  136 (166)
T ss_dssp             ------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCCSCHHH---------HHHHHHHT
T ss_pred             hhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEeccccccccccCHHH---------HHHHHHHh
Confidence            335567899999999974422221 12223333221 12347999999999987543112111         23344444


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      +.+++      ..|+.++.+++++++.|.+.+.+.
T Consensus       137 ~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~~  165 (166)
T 3q72_A          137 DCKFI------ETSAALHHNVQALFEGVVRQIRLR  165 (166)
T ss_dssp             TCEEE------ECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred             CCcEE------EeccCCCCCHHHHHHHHHHHHHhc
Confidence            54332      346677799999999998887654

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.78  E-value=2.5e-18  Score=126.90  Aligned_cols=164  Identities=18%  Similarity=0.130  Sum_probs=97.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      +.++|+++|.+|+|||||+|+|++...........+.+.   ...... ++  ..+.+|||||..+..       .....
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~~~Dt~G~~~~~-------~~~~~   70 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY---RQVISC-DKSICTLQITDTTGSHQFP-------AMQRL   70 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE---EEEEEE-TTEEEEEEEEECCSCSSCH-------HHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE---EEEEEE-CCEEEEEEEEECCCchhhH-------HHHHH
Confidence            358999999999999999999998764322111111111   112222 33  368999999976541       11112


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                          +...+|++++|+|++++.+... ..++..+.+........|+++|+||+|+.........         ....+..
T Consensus        71 ----~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~---------~~~~~~~  137 (172)
T 2erx_A           71 ----SISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSS---------EAEALAR  137 (172)
T ss_dssp             ----HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHH---------HHHHHHH
T ss_pred             ----hcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHH---------HHHHHHH
Confidence                2234699999999974322221 3344555554322234799999999997654311111         1233444


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ..+..++      ..|+.++.+++++++.|.+.+.++
T Consensus       138 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~~  168 (172)
T 2erx_A          138 TWKCAFM------ETSAKLNHNVKELFQELLNLEKRR  168 (172)
T ss_dssp             HHTCEEE------ECBTTTTBSHHHHHHHHHHTCCSS
T ss_pred             HhCCeEE------EecCCCCcCHHHHHHHHHHHHhhh
Confidence            4454333      345566789999999998766543

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.78  E-value=4.1e-18  Score=125.32  Aligned_cols=160  Identities=17%  Similarity=0.090  Sum_probs=99.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ..++|+++|.+|+|||||+|+|++......  ..+..+.......+.+ ++  ..+.+|||||..+.....         
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~---------   71 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKD--YKKTIGVDFLERQIQV-NDEDVRLMLWDTAGQEEFDAIT---------   71 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCC--SSCCCSSSEEEEEEEE-TTEEEEEEEECCTTGGGTTCCC---------
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCCCCCC--CCCceEEEEEEEEEEE-CCEEEEEEEEcCCCcHhHHHHH---------
Confidence            468999999999999999999997664222  1222222333334444 33  379999999976443211         


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                        ..+...+|++++|+|++++.+... ..++..+....   ...|+++|+||+|.........++         ..++.+
T Consensus        72 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~  137 (168)
T 1z2a_A           72 --KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLDDSCIKNEE---------AEGLAK  137 (168)
T ss_dssp             --HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGGGCSSCHHH---------HHHHHH
T ss_pred             --HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCcccccCHHH---------HHHHHH
Confidence              123457799999999974322111 22333343332   247999999999986543111111         344555


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      ..+.+++      ..|+.++.+++++++.|.+.+.
T Consensus       138 ~~~~~~~------~~Sa~~~~~i~~l~~~l~~~~~  166 (168)
T 1z2a_A          138 RLKLRFY------RTSVKEDLNVSEVFKYLAEKHL  166 (168)
T ss_dssp             HHTCEEE------ECBTTTTBSSHHHHHHHHHHHH
T ss_pred             HcCCeEE------EEecCCCCCHHHHHHHHHHHHh
Confidence            5555433      3455667899999999987664

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.78  E-value=2.3e-19  Score=150.68  Aligned_cols=169  Identities=16%  Similarity=0.161  Sum_probs=111.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ....++|+|+|++|+|||||+|+|++...... ...+++|.......+.+.+...+.||||||+.++............ 
T Consensus        31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~-~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~-  108 (423)
T 3qq5_A           31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIV-SDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKAR-  108 (423)
T ss_dssp             -CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHH-
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHcCCCCcc-CCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHH-
Confidence            45678999999999999999999998875433 3456677777777777733449999999999876543222222222 


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                         .....+|++|+|+|+  .....+..++..+.+.     ..|+++|+||+|.......   +.        ..++.+.
T Consensus       109 ---~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~-----~~piIvV~NK~Dl~~~~~~---~~--------~~~l~~~  167 (423)
T 3qq5_A          109 ---RVFYRADCGILVTDS--APTPYEDDVVNLFKEM-----EIPFVVVVNKIDVLGEKAE---EL--------KGLYESR  167 (423)
T ss_dssp             ---HHHTSCSEEEEECSS--SCCHHHHHHHHHHHHT-----TCCEEEECCCCTTTTCCCT---HH--------HHHSSCC
T ss_pred             ---HHHhcCCEEEEEEeC--CChHHHHHHHHHHHhc-----CCCEEEEEeCcCCCCccHH---HH--------HHHHHHH
Confidence               234467999999998  4556667777777764     3799999999998766421   11        1222222


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG  213 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~  213 (225)
                      ++.      .....|++++.+++++++.|.+.+++...
T Consensus       168 ~g~------~v~~vSAktg~gI~eL~~~L~~~l~~~~e  199 (423)
T 3qq5_A          168 YEA------KVLLVSALQKKGFDDIGKTISEILPGDEE  199 (423)
T ss_dssp             TTC------CCCCCSSCCTTSTTTHHHHHHHHSCCCCC
T ss_pred             cCC------CEEEEECCCCCCHHHHHHHHHHhhhhhcc
Confidence            232      34556778889999999999998866633

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.78  E-value=1e-18  Score=134.45  Aligned_cols=172  Identities=16%  Similarity=0.198  Sum_probs=103.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEI   93 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~   93 (225)
                      ....++|+|+|.+|+|||||+|+|++...........+.+.  .........+  ..+.||||||.........      
T Consensus         8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~------   79 (218)
T 4djt_A            8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVN--HPVTFLDDQGNVIKFNVWDTAGQEKKAVLKD------   79 (218)
T ss_dssp             --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEE--EEEEEEBTTSCEEEEEEEEECSGGGTSCCCH------
T ss_pred             ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceee--EEEEEEeCCCcEEEEEEEecCCchhhchHHH------
Confidence            35679999999999999999999997764322111222222  2222222122  4699999999765432222      


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI  172 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (225)
                           .....+|++|+|+|+.++.+..+ ..++..+......  ..|+++|+||+|+........+         ...++
T Consensus        80 -----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~~---------~~~~~  143 (218)
T 4djt_A           80 -----VYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGN--EAPIVVCANKIDIKNRQKISKK---------LVMEV  143 (218)
T ss_dssp             -----HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCS--SSCEEEEEECTTCC----CCHH---------HHHHH
T ss_pred             -----HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccccccCHH---------HHHHH
Confidence                 23446899999999985433222 2344455444332  3799999999997644211111         12233


Q ss_pred             HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCCCCCC
Q 036158          173 LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGGQPYT  217 (225)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~~~~~  217 (225)
                      ....+..++      ..|+.++.+++++++.|.+.+.+.....+.
T Consensus       144 ~~~~~~~~~------~~Sa~~g~gv~~l~~~l~~~~~~~~~~~~~  182 (218)
T 4djt_A          144 LKGKNYEYF------EISAKTAHNFGLPFLHLARIFTGRPDLIFV  182 (218)
T ss_dssp             TTTCCCEEE------EEBTTTTBTTTHHHHHHHHHHHCCTTCCBC
T ss_pred             HHHcCCcEE------EEecCCCCCHHHHHHHHHHHHhcccccccc
Confidence            333333333      345566789999999999999887665543

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.78  E-value=5.3e-18  Score=128.02  Aligned_cols=168  Identities=11%  Similarity=0.068  Sum_probs=103.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCC------CCCceeEEEEEEEE---e-eCCceEEEEeCCCCCCCCCC
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAG------SSGVTKTCEMQRTM---L-KDGQVVNVIDTPGLFDSSAD   85 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~---~-~~~~~~~liDtPG~~~~~~~   85 (225)
                      ....++|+|+|.+|+|||||+|.+.+.........      ....|.........   . .....+.+|||||.....  
T Consensus        11 ~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--   88 (198)
T 3t1o_A           11 REINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN--   88 (198)
T ss_dssp             TEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS--
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH--
Confidence            35579999999999999999998887553221110      01223333332221   1 012379999999987542  


Q ss_pred             cHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc----ccccccEEEEEecCCCCCCCcccHHHHh
Q 036158           86 SEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFG----KKISDYMIVVFTGGDELEDNDETLEDYL  161 (225)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~vv~~k~D~~~~~~~~~~~~~  161 (225)
                               ..+..++..+|++|+|+|+.++......+.++.+..++.    .....|+++|.||+|+....  ..++  
T Consensus        89 ---------~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~--~~~~--  155 (198)
T 3t1o_A           89 ---------ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDAL--PVEM--  155 (198)
T ss_dssp             ---------HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCC--CHHH--
T ss_pred             ---------HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccccc--CHHH--
Confidence                     122235668899999999975444444444444433322    12357999999999976542  2221  


Q ss_pred             hhcCCchHHHHHHHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          162 GRECPKPLKEILQLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       162 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                             +++.++..+. .+      ...|+.++.+++++++.|.+.+.++
T Consensus       156 -------~~~~~~~~~~~~~------~~~Sa~~~~gv~~l~~~l~~~i~~~  193 (198)
T 3t1o_A          156 -------VRAVVDPEGKFPV------LEAVATEGKGVFETLKEVSRLVLAR  193 (198)
T ss_dssp             -------HHHHHCTTCCSCE------EECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             -------HHHHHHhcCCceE------EEEecCCCcCHHHHHHHHHHHHHHH
Confidence                   3444444443 22      2456677899999999998877664

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.78  E-value=6.2e-18  Score=129.73  Aligned_cols=120  Identities=18%  Similarity=0.224  Sum_probs=76.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeC--CceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKD--GQVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ...++|+++|.+|+|||||+|+|++.... ..  ..+++  .....+.+.+  +..+.+|||||...           +.
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~   68 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYR-DT--QTSIT--DSSAIYKVNNNRGNSLTLIDLPGHES-----------LR   68 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCC-CB--CCCCS--CEEEEEECSSTTCCEEEEEECCCCHH-----------HH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcc-cc--cCCcc--eeeEEEEecCCCccEEEEEECCCChh-----------HH
Confidence            45689999999999999999999977632 21  22222  2333355522  56899999999752           12


Q ss_pred             H-HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc----cccccEEEEEecCCCCCCC
Q 036158           95 K-CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK----KISDYMIVVFTGGDELEDN  153 (225)
Q Consensus        95 ~-~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~vv~~k~D~~~~~  153 (225)
                      . .+..++..+|++|+|+|+.+ .........+++...+..    ....|+++|+||+|+....
T Consensus        69 ~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  131 (214)
T 2fh5_B           69 FQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK  131 (214)
T ss_dssp             HHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred             HHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence            2 23334667899999999973 222233344444433221    2347999999999987654

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.78  E-value=1.7e-17  Score=123.22  Aligned_cols=165  Identities=16%  Similarity=0.073  Sum_probs=101.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ...++|+++|.+|+|||||+|++++......  ..+..+.......+.+ ++  ..+.+|||||....           .
T Consensus         5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~   70 (177)
T 1wms_A            5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQ--LFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQERF-----------R   70 (177)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEEE-TTEEEEEEEEECCCCGGG-----------H
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCceeeeEEEEEEEE-CCEEEEEEEEeCCCchhh-----------h
Confidence            4568999999999999999999997664222  1222233333344455 44  38999999996432           2


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE  171 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~  171 (225)
                      ..+..+...+|++++|+|++++.+... ..++..+......  ....|+++|+||+|..... ...++         ..+
T Consensus        71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-~~~~~---------~~~  140 (177)
T 1wms_A           71 SLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-VSTEE---------AQA  140 (177)
T ss_dssp             HHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-SCHHH---------HHH
T ss_pred             hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccc-cCHHH---------HHH
Confidence            334456778899999999974432221 2334444443321  1347999999999986321 11221         233


Q ss_pred             HHH-HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          172 ILQ-LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       172 ~~~-~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      +.. ..+..++      ..|+.++.+++++++.|.+.+.+.
T Consensus       141 ~~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~~  175 (177)
T 1wms_A          141 WCRDNGDYPYF------ETSAKDATNVAAAFEEAVRRVLAT  175 (177)
T ss_dssp             HHHHTTCCCEE------ECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             HHHhcCCceEE------EEeCCCCCCHHHHHHHHHHHHHhh
Confidence            333 2233332      345567799999999998877553

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.77  E-value=2.1e-18  Score=139.41  Aligned_cols=169  Identities=15%  Similarity=0.193  Sum_probs=111.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCC-CCCCCcHHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF-DSSADSEFVSKEIVKC   96 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~-~~~~~~~~~~~~~~~~   96 (225)
                      ...+|+++|++|+|||||+|+|++....... ..+++|+......+.. ++..+.++||||+. ..   ...+...+...
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s-~~~~tTr~~~~gi~~~-~~~~i~~iDTpG~~~~~---~~~l~~~~~~~   81 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITS-RKAQTTRHRIVGIHTE-GAYQAIYVDTPGLHMEE---KRAINRLMNKA   81 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECC-CCSSCCSSCEEEEEEE-TTEEEEEESSSSCCHHH---HHHHHHHHTCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccC-CCCCcceeeEEEEEEE-CCeeEEEEECcCCCccc---hhhHHHHHHHH
Confidence            3468999999999999999999998764432 2344555444444555 67899999999986 21   11222233334


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      +..+...+|++++|+|+.+ ++..+..+++.+..     ...|+++++||+|..... ..+.+.        +.++.+..
T Consensus        82 ~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~-----~~~P~ilvlNK~D~~~~~-~~~~~~--------l~~l~~~~  146 (301)
T 1ega_A           82 ASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE-----GKAPVILAVNKVDNVQEK-ADLLPH--------LQFLASQM  146 (301)
T ss_dssp             TTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS-----SSSCEEEEEESTTTCCCH-HHHHHH--------HHHHHTTS
T ss_pred             HHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh-----cCCCEEEEEECcccCccH-HHHHHH--------HHHHHHhc
Confidence            4566788999999999985 88777766655542     237999999999976421 122222        23333333


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      +..     ...+.|+.++.++++|++.|.+.+++.
T Consensus       147 ~~~-----~~i~iSA~~g~~v~~l~~~i~~~l~~~  176 (301)
T 1ega_A          147 NFL-----DIVPISAETGLNVDTIAAIVRKHLPEA  176 (301)
T ss_dssp             CCS-----EEEECCTTTTTTHHHHHHHHHTTCCBC
T ss_pred             CcC-----ceEEEECCCCCCHHHHHHHHHHhCCcC
Confidence            321     123446667789999999998776543

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.77  E-value=3.1e-18  Score=128.07  Aligned_cols=164  Identities=15%  Similarity=0.110  Sum_probs=82.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ...++|+|+|.+|+|||||+|+|++......  ..++.+.......+.+ ++  ..+.||||||....           .
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~   71 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNST--FISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERF-----------R   71 (183)
T ss_dssp             SEEEEEEEECCCCC----------------C--HHHHHCEEEEEEEEEE-TTEEEEEEEEEC------------------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCcccceeEEEEEEE-CCEEEEEEEEcCCCChhh-----------h
Confidence            3468999999999999999999997653211  1222333344444555 45  57999999997533           2


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                      ..+..+...+|++|+|+|+.++.+... ..++..+.....  ...|+++|.||+|+........++         ..++.
T Consensus        72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~v~~~~---------~~~~~  140 (183)
T 2fu5_C           72 TITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS--ADVEKMILGNKCDVNDKRQVSKER---------GEKLA  140 (183)
T ss_dssp             --CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEEC--CCSCCCSCHHH---------HHHHH
T ss_pred             hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECccCCccCcCCHHH---------HHHHH
Confidence            233456678999999999975322221 223333333221  247999999999986543111111         34444


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      +..+.+++      ..|+.++.+++++++.|.+.+.++
T Consensus       141 ~~~~~~~~------~~Sa~~~~~i~~l~~~l~~~i~~~  172 (183)
T 2fu5_C          141 LDYGIKFM------ETSAKANINVENAFFTLARDIKAK  172 (183)
T ss_dssp             HHHTCEEE------ECCC---CCHHHHHHHHHHHHHHH
T ss_pred             HHcCCeEE------EEeCCCCCCHHHHHHHHHHHHHHH
Confidence            55554433      345567789999999988777553

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.77  E-value=1.6e-18  Score=130.76  Aligned_cols=167  Identities=12%  Similarity=0.044  Sum_probs=102.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ...++|+|+|.+|+|||||+|+|++...........+.+.......... ....+.||||||..           .+...
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~-----------~~~~~   88 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHE-KRVKLQIWDTAGQE-----------RYRTI   88 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETT-TTEEEEEECHHHHH-----------HCHHH
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECC-EEEEEEEEeCCChH-----------HHHHH
Confidence            4578999999999999999999997653222111112222222222222 34579999999943           22333


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      ...+...+|++|+|+|+.++.+.. ...+++.+.....  ...|+++|+||+|+........++         .+.+...
T Consensus        89 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~  157 (191)
T 3dz8_A           89 TTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSW--DNAQVILVGNKCDMEEERVVPTEK---------GQLLAEQ  157 (191)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred             HHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccccccCHHH---------HHHHHHH
Confidence            444566789999999997432221 1234444444321  247999999999975443111111         3344455


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                      .+..++      ..|+.++.+++++++.|.+.+.+..
T Consensus       158 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~~~  188 (191)
T 3dz8_A          158 LGFDFF------EASAKENISVRQAFERLVDAICDKM  188 (191)
T ss_dssp             HTCEEE------ECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             cCCeEE------EEECCCCCCHHHHHHHHHHHHHHhc
Confidence            555433      3455667899999999988876653

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.77  E-value=5.2e-18  Score=127.61  Aligned_cols=164  Identities=13%  Similarity=0.107  Sum_probs=104.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .+.++|+++|.+|+|||||+|++.+...... .    .|.......+.+ ++..+.+|||||.......           
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~----~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~-----------   82 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTT-V----PTVGVNLETLQY-KNISFEVWDLGGQTGVRPY-----------   82 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEEE-C----SSTTCCEEEEEE-TTEEEEEEEECCSSSSCCC-----------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCCc-C----CCCceEEEEEEE-CCEEEEEEECCCCHhHHHH-----------
Confidence            4679999999999999999999987664322 1    122233344555 6789999999998754321           


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      +..+...+|++++|+|+.++.+-..  ...++.+....  ....|+++|+||+|+....  ..++....     +.  ..
T Consensus        83 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~-----~~--~~  151 (189)
T 2x77_A           83 WRCYFSDTDAVIYVVDSTDRDRMGV--AKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQ-----LG--VS  151 (189)
T ss_dssp             CSSSSTTCCEEEEEEETTCCTTHHH--HHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHH-----TT--GG
T ss_pred             HHHHhhcCCEEEEEEeCCCHHHHHH--HHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHH-----hC--hh
Confidence            2245678899999999975433222  23334443322  1247999999999987553  22322222     00  01


Q ss_pred             HcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          175 LCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       175 ~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                      .+.. .+.    ....|+.++.+++++++.|.+.+.+..
T Consensus       152 ~~~~~~~~----~~~~Sa~~~~gi~~l~~~l~~~i~~~~  186 (189)
T 2x77_A          152 SIMNRTWT----IVKSSSKTGDGLVEGMDWLVERLREQG  186 (189)
T ss_dssp             GCCSSCEE----EEECCTTTCTTHHHHHHHHHHHHHHTC
T ss_pred             hccCCceE----EEEccCCCccCHHHHHHHHHHHHHhcc
Confidence            1111 122    224566777999999999998887754

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.77  E-value=6.2e-18  Score=125.69  Aligned_cols=168  Identities=15%  Similarity=0.073  Sum_probs=102.6

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC---ceEEEEeCCCCCCCCCCcHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG---QVVNVIDTPGLFDSSADSEFVSKE   92 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~liDtPG~~~~~~~~~~~~~~   92 (225)
                      ....++|+++|.+|+|||||+|+|++.......  .+..+.......+.+ ++   ..+.+|||||.......       
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~~~~Dt~G~~~~~~~-------   72 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQY--KQTIGLDFFLRRITL-PGNLNVTLQIWDIGGQTIGGKM-------   72 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHH--HHTTTSSEEEEEEEE-TTTEEEEEEEEECTTCCTTCTT-------
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCC--CCceeEEEEEEEEEe-CCCCEEEEEEEECCCCccccch-------
Confidence            346799999999999999999999976642111  112222333444555 33   58999999997654321       


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhccccccc-EEEEEecCCCCCCCcccHHHHhhhcCCchHH
Q 036158           93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDY-MIVVFTGGDELEDNDETLEDYLGRECPKPLK  170 (225)
Q Consensus        93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~-~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~  170 (225)
                          +..+...+|++++|+|+.++.+..+ ..++..+..........| +++|.||+|+........++         ..
T Consensus        73 ----~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~---------~~  139 (178)
T 2hxs_A           73 ----LDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEK---------HL  139 (178)
T ss_dssp             ----HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHH---------HH
T ss_pred             ----hhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHH---------HH
Confidence                1123457899999999974432222 233344444322111244 78999999976432111111         33


Q ss_pred             HHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          171 EILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                      ++.+..+..++      ..|+.++.+++++++.|.+.+.+..
T Consensus       140 ~~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~~~  175 (178)
T 2hxs_A          140 RFCQENGFSSH------FVSAKTGDSVFLCFQKVAAEILGIK  175 (178)
T ss_dssp             HHHHHHTCEEE------EECTTTCTTHHHHHHHHHHHHTTCC
T ss_pred             HHHHHcCCcEE------EEeCCCCCCHHHHHHHHHHHHHhhh
Confidence            44444454433      3455667899999999988776543

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.77  E-value=4.5e-18  Score=128.02  Aligned_cols=165  Identities=14%  Similarity=0.098  Sum_probs=97.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEI   93 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~   93 (225)
                      ....++|+|+|.+|+|||||+|+|++.......  .+..+.......+.+ ++  ..+.||||||..+           +
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~   82 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRT--EATIGVDFRERAVDI-DGERIKIQLWDTAGQER-----------F   82 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSC--CCCCSCCEEEEEEEE-TTEEEEEEEEECCCSHH-----------H
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCCcceEEEEEEEEE-CCEEEEEEEEECCCchh-----------h
Confidence            456799999999999999999999976643222  222233333344444 44  4799999999532           2


Q ss_pred             H-HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158           94 V-KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE  171 (225)
Q Consensus        94 ~-~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~  171 (225)
                      . ..+..+...+|++|+|+|+.+..+... ..++..+..... ....|+++|+||+|+........+         ..++
T Consensus        83 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~---------~~~~  152 (189)
T 1z06_A           83 RKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRSAIQVPTD---------LAQK  152 (189)
T ss_dssp             HTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGGGCCSCHH---------HHHH
T ss_pred             hhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceeCHH---------HHHH
Confidence            2 223334567899999999974322211 223444444321 234799999999998643211111         1334


Q ss_pred             HHHHcCCcEEEeeCCCccccccH---HHHHHHHHHHHHHHHH
Q 036158          172 ILQLCDNRCVLFDNKTKDTAKRT---EQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~---~~v~~l~~~i~~~~~~  210 (225)
                      +....+..++.      .|+.++   .+++++++.|.+.+.+
T Consensus       153 ~~~~~~~~~~~------~Sa~~~~~~~~i~~l~~~l~~~i~~  188 (189)
T 1z06_A          153 FADTHSMPLFE------TSAKNPNDNDHVEAIFMTLAHKLKS  188 (189)
T ss_dssp             HHHHTTCCEEE------CCSSSGGGGSCHHHHHHHHC-----
T ss_pred             HHHHcCCEEEE------EeCCcCCcccCHHHHHHHHHHHHhh
Confidence            44455544433      344555   7899999988766543

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.77  E-value=1.1e-17  Score=128.56  Aligned_cols=162  Identities=12%  Similarity=0.083  Sum_probs=100.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeE--EEEEEEEeeC-----------CceEEEEeCCCCCCCC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKT--CEMQRTMLKD-----------GQVVNVIDTPGLFDSS   83 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~--~~~~~~~~~~-----------~~~~~liDtPG~~~~~   83 (225)
                      ...++|+|+|.+|+|||||+|+|++.....    ....|..  .....+.+..           ...+.||||||..   
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~---   95 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNP----KFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE---   95 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCC----EEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH---
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCCCCc----CCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH---
Confidence            446899999999999999999999866421    1122222  2222333422           3579999999942   


Q ss_pred             CCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCCcccHHHHh
Q 036158           84 ADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYL  161 (225)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~vv~~k~D~~~~~~~~~~~~~  161 (225)
                              .+...+..++..+|++|+|+|+.+..+  ......++..+....  ...|+++|+||+|+........+   
T Consensus        96 --------~~~~~~~~~~~~~d~iilV~D~~~~~s--~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~---  162 (217)
T 2f7s_A           96 --------RFRSLTTAFFRDAMGFLLMFDLTSQQS--FLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNER---  162 (217)
T ss_dssp             --------HHHHHHHHHHTTCCEEEEEEETTCHHH--HHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHH---
T ss_pred             --------hHHhHHHHHhcCCCEEEEEEECcCHHH--HHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHH---
Confidence                    233344455678899999999974322  122334444432211  34799999999998643211111   


Q ss_pred             hhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          162 GRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                            ...++....+..++.      .|+.++.+++++++.|.+.+.+
T Consensus       163 ------~~~~~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~i~~  199 (217)
T 2f7s_A          163 ------QARELADKYGIPYFE------TSAATGQNVEKAVETLLDLIMK  199 (217)
T ss_dssp             ------HHHHHHHHTTCCEEE------EBTTTTBTHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHCCCcEEE------EECCCCCCHHHHHHHHHHHHHH
Confidence                  134455555655443      3455668999999998877655

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.77  E-value=3e-18  Score=127.32  Aligned_cols=162  Identities=15%  Similarity=0.093  Sum_probs=99.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      .+.++|+|+|.+|+|||||+|+|++......  ..+..+.......+.+ ++  ..+.+|||||......          
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~----------   78 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNT--YQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRS----------   78 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSS--CCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGG----------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCceeeEEEEEEEEE-CCeEEEEEEEECCCcHHHHH----------
Confidence            4568999999999999999999997664322  2333344444445555 44  3799999999653321          


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                       .+..+...+|++++|+|+.++.+.. ...++..+.....  ...|+++|+||+|+........++         .....
T Consensus        79 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~  146 (179)
T 2y8e_A           79 -LIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG--SDVIIMLVGNKTDLSDKRQVSTEE---------GERKA  146 (179)
T ss_dssp             -GSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT--TSSEEEEEEECGGGGGGCCSCHHH---------HHHHH
T ss_pred             -HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCcccccCcCCHHH---------HHHHH
Confidence             1112334679999999997432211 1233344443322  247899999999976543111111         23344


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      ...+..++.      .|+.++.+++++++.|.+.+.
T Consensus       147 ~~~~~~~~~------~Sa~~~~~i~~l~~~l~~~~~  176 (179)
T 2y8e_A          147 KELNVMFIE------TSAKAGYNVKQLFRRVAAALP  176 (179)
T ss_dssp             HHHTCEEEE------EBTTTTBSHHHHHHHHHHTCC
T ss_pred             HHcCCeEEE------EeCCCCCCHHHHHHHHHHHHh
Confidence            444544433      345566899999999876553

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.77  E-value=3.2e-18  Score=126.20  Aligned_cols=164  Identities=20%  Similarity=0.138  Sum_probs=93.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .++|+++|.+|+|||||+|+|++.......  ....+.......+.+ ++  ..+.+|||||..+....       +.  
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~-------~~--   69 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAH--EMENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGGW-------LQ--   69 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEE-TTEEEEEEEECCCCC-----------------
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccc--cCCCcCCeeeEEEEE-CCeEEEEEEEECCCccccchh-------hh--
Confidence            478999999999999999999876543221  222334444444445 44  36889999998754210       11  


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                       ..+...+|++++|+|++++.+... ..++..+..... ....|+++|.||+|+........++         ..++.+.
T Consensus        70 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~~~  138 (169)
T 3q85_A           70 -DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARSREVSLEE---------GRHLAGT  138 (169)
T ss_dssp             -CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred             -hhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhccc-CCCCCEEEEeeCcchhhcccCCHHH---------HHHHHHH
Confidence             111224699999999974322111 123333333221 1247999999999976433112111         3445555


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      .+..++      ..|+.++.+++++++.+.+.+...
T Consensus       139 ~~~~~~------~~Sa~~~~~v~~l~~~l~~~i~~~  168 (169)
T 3q85_A          139 LSCKHI------ETSAALHHNTRELFEGAVRQIRLR  168 (169)
T ss_dssp             TTCEEE------ECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             cCCcEE------EecCccCCCHHHHHHHHHHHHHhc
Confidence            555433      345667799999999998877654

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.77  E-value=1.3e-17  Score=125.15  Aligned_cols=169  Identities=15%  Similarity=0.227  Sum_probs=108.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ..+.++|+++|++|+|||||+|+|++......  ..++.|.......+.+ ++..+.+|||||.........  .+.+..
T Consensus         4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~--~~~~~~   78 (188)
T 2wjg_A            4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIG--NWPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSI--DEIIAR   78 (188)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEE--ECTTSCCEEEEEEEEE-TTEEEEEEECCCCSCCSSSSH--HHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCcccc--CCCCeeccceEEEEEe-CCcEEEEEECCCcCccccccH--HHHHHH
Confidence            34678999999999999999999998764322  2345566666666777 788999999999886642211  111211


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      .... ...+|++++|+|..+ + .   ....++.....  ...|+++|.||+|.....  .        ......++.+.
T Consensus        79 ~~~~-~~~~~~~i~v~d~~~-~-~---~~~~~~~~~~~--~~~piilv~nK~Dl~~~~--~--------~~~~~~~~~~~  140 (188)
T 2wjg_A           79 DYII-NEKPDLVVNIVDATA-L-E---RNLYLTLQLME--MGANLLLALNKMDLAKSL--G--------IEIDVDKLEKI  140 (188)
T ss_dssp             HHHH-HHCCSEEEEEEEGGG-H-H---HHHHHHHHHHT--TTCCEEEEEECHHHHHHT--T--------CCCCHHHHHHH
T ss_pred             HHHh-ccCCCEEEEEecchh-H-H---HHHHHHHHHHh--cCCCEEEEEEhhhccccc--c--------chHHHHHHHHH
Confidence            1111 124699999999862 2 1   22333333322  247999999999965322  1        11224555555


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG  213 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~  213 (225)
                      ++..++      ..|+..+.+++++++.+.+.+.+...
T Consensus       141 ~~~~~~------~~Sa~~~~~v~~l~~~i~~~~~~~~~  172 (188)
T 2wjg_A          141 LGVKVV------PLSAAKKMGIEELKKAISIAVKDKKT  172 (188)
T ss_dssp             HTSCEE------ECBGGGTBSHHHHHHHHHHHHTTC--
T ss_pred             hCCCeE------EEEecCCCCHHHHHHHHHHHHHhccC
Confidence            565433      34566778999999999999887764

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.77  E-value=8.3e-17  Score=117.73  Aligned_cols=161  Identities=19%  Similarity=0.180  Sum_probs=97.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      +.++|+++|.+|+|||||+|++++......   ...++.......+.. ++  ..+.+|||||..+..    ...   ..
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~----~~~---~~   70 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDE---CDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYS----AMR---DQ   70 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCCSC---CCTTCCEEEEEEEEE-TTEEEEEEEEECCCCSSCC----HHH---HH
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCccc---cCCccceEEEEEEEE-CCEEEEEEEEECCCchhhh----HHH---HH
Confidence            357899999999999999999997764222   122222222233344 33  358899999976542    111   11


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                          +...+|++++|+++.+..+... ..++..+..... ....|+++|+||+|.....  ...+.        ..++.+
T Consensus        71 ----~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~nK~Dl~~~~--~~~~~--------~~~~~~  135 (166)
T 2ce2_X           71 ----YMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDLAART--VESRQ--------AQDLAR  135 (166)
T ss_dssp             ----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCCC--SCHHH--------HHHHHH
T ss_pred             ----hhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEchhhhhcc--cCHHH--------HHHHHH
Confidence                2234699999999874322221 233344444322 1247999999999987532  11111        344555


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      ..+.+++.      .|+.++.+++++++.|.+.+.+
T Consensus       136 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~  165 (166)
T 2ce2_X          136 SYGIPYIE------TSAKTRQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             HHTCCEEE------ECTTTCTTHHHHHHHHHHHHHT
T ss_pred             HcCCeEEE------ecCCCCCCHHHHHHHHHHHHHh
Confidence            55554443      3455668999999999887654

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.77  E-value=3.5e-18  Score=125.36  Aligned_cols=160  Identities=11%  Similarity=0.047  Sum_probs=98.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (225)
                      ++|+++|.+|+|||||+|++++......     ..|.......+.+ .+..+.+|||||....           ...+..
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~-----------~~~~~~   63 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDKI-----------RPLWRH   63 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCC-----CCCSSCCEEEEEC-SSCEEEEEECCCCGGG-----------HHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCcc-----cCcCceeEEEEEE-CCEEEEEEEcCCChhh-----------HHHHHH
Confidence            4799999999999999999987653211     1233333445555 6789999999997532           223334


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158          100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus       100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      +...+|++++|+|+.++.+-.  ....++.+....  ....|+++|+||+|+....  ..++.... ..      .....
T Consensus        64 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~-~~------~~~~~  132 (164)
T 1r8s_A           64 YFQNTQGLIFVVDSNDRERVN--EAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDK-LG------LHSLR  132 (164)
T ss_dssp             HTTTCSEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHH-TT------GGGCS
T ss_pred             HhccCCEEEEEEECCCHHHHH--HHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHH-hC------ccccc
Confidence            567889999999997542222  233444444332  1247999999999986543  22222221 00      01111


Q ss_pred             C-cEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          178 N-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       178 ~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      . .+.    ....|+.++.+++++++.|.+.+.++
T Consensus       133 ~~~~~----~~~~Sa~~~~gi~~l~~~l~~~i~~~  163 (164)
T 1r8s_A          133 HRNWY----IQATCATSGDGLYEGLDWLSNQLRNQ  163 (164)
T ss_dssp             SCCEE----EEECBTTTTBTHHHHHHHHHHHC---
T ss_pred             CccEE----EEEcccCCCcCHHHHHHHHHHHHhhc
Confidence            1 122    22456677899999999998776543

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.77  E-value=2.5e-17  Score=125.52  Aligned_cols=164  Identities=14%  Similarity=0.127  Sum_probs=103.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ...++|+|+|.+|+|||||+|+|++......  ..+..+.......+.+ ++  ..+.||||||...           +.
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~   89 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPG--QGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQER-----------FR   89 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTT--CCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GH
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhCCCCCC--CCCccceeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HH
Confidence            3468999999999999999999997664221  2223333444445555 44  3789999999642           23


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                      .....++..+|++|+|+|+.++.+... ..++..+.....  ...|+++|.||+|+........++         ..++.
T Consensus        90 ~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~~~~v~~~~---------~~~~~  158 (201)
T 2ew1_A           90 SITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS--NKVITVLVGNKIDLAERREVSQQR---------AEEFS  158 (201)
T ss_dssp             HHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCSSCHHH---------HHHHH
T ss_pred             HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccccccCHHH---------HHHHH
Confidence            334566788999999999974322211 233444444322  247899999999986432111111         23344


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ...+..++      ..|+.++.+++++++.|.+.+.+.
T Consensus       159 ~~~~~~~~------~~Sa~~g~gv~~l~~~l~~~i~~~  190 (201)
T 2ew1_A          159 EAQDMYYL------ETSAKESDNVEKLFLDLACRLISE  190 (201)
T ss_dssp             HHHTCCEE------ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHcCCEEE------EEeCCCCCCHHHHHHHHHHHHHHH
Confidence            44454333      345667799999999998777554

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.77  E-value=2.1e-18  Score=131.64  Aligned_cols=167  Identities=16%  Similarity=0.029  Sum_probs=99.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEI   93 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~   93 (225)
                      ..+.++|+++|.+|+|||||++++++......   ..+++.......+.+ ++.  .+.+|||||.....          
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~----------   92 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGE---YIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYD----------   92 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHHHSCCCC----CCCCSEEEEEEEEEC-C-CEEEEEEEEECCSGGGT----------
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCC---cCCeecceeEEEEEE-CCEEEEEEEEECCCchhhH----------
Confidence            35679999999999999999999996654222   223333333334444 444  45699999975432          


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhh-----cCC
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR-----ECP  166 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~-----~~~  166 (225)
                       .....+...+|++++|+|++++.+..+.  .++..+....   ...|+++|+||+|+....  ...+...+     ...
T Consensus        93 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~  166 (204)
T 4gzl_A           93 -RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDK--DTIEKLKEKKLTPITY  166 (204)
T ss_dssp             -TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHTCH--HHHHHHHHTTCCCCCH
T ss_pred             -HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhccch--hhhhhhhccccccccH
Confidence             2233466789999999999854333332  3444444432   248999999999987543  21111111     011


Q ss_pred             chHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          167 KPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                      .....+.+..+...     ....||.++.+++++++.|.+.
T Consensus       167 ~~~~~~~~~~~~~~-----~~~~SA~~g~gi~~l~~~l~~~  202 (204)
T 4gzl_A          167 PQGLAMAKEIGAVK-----YLECSALTQRGLKTVFDEAIRA  202 (204)
T ss_dssp             HHHHHHHHHTTCSE-----EEECCTTTCTTHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCcE-----EEEeeCCCCCCHHHHHHHHHHH
Confidence            11333444444321     2234666779999999998654

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.77  E-value=6.2e-17  Score=120.38  Aligned_cols=168  Identities=18%  Similarity=0.177  Sum_probs=101.7

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHH
Q 036158           15 PSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKE   92 (225)
Q Consensus        15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~   92 (225)
                      +....++|+|+|.+|+|||||+|+|++......   ..+++.......+.+ ++  ..+.+|||||..+......     
T Consensus         5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~-----   75 (181)
T 2fn4_A            5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSD---YDPTIEDSYTKICSV-DGIPARLDILDTAGQEEFGAMRE-----   75 (181)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSS---CCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTTTSCCHH-----
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCcCccc---cCCCcCceEEEEEEE-CCEEEEEEEEECCCchhhHHHHH-----
Confidence            345679999999999999999999998753221   222232222234444 44  3788999999875532211     


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158           93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE  171 (225)
Q Consensus        93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~  171 (225)
                        .    +...+|++++|+|+.++.+... ..++..+..... ....|+++|+||+|+........++         ...
T Consensus        76 --~----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~---------~~~  139 (181)
T 2fn4_A           76 --Q----YMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD-RDDFPVVLVGNKADLESQRQVPRSE---------ASA  139 (181)
T ss_dssp             --H----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-SSCCCEEEEEECGGGGGGCCSCHHH---------HHH
T ss_pred             --H----HHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccCHHH---------HHH
Confidence              1    1234699999999974322121 123333322221 1247999999999986543111111         233


Q ss_pred             HHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158          172 ILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG  213 (225)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~  213 (225)
                      +....+..++      ..|+.++.+++++++.|.+.+.+...
T Consensus       140 ~~~~~~~~~~------~~Sa~~~~gv~~l~~~l~~~~~~~~~  175 (181)
T 2fn4_A          140 FGASHHVAYF------EASAKLRLNVDEAFEQLVRAVRKYQE  175 (181)
T ss_dssp             HHHHTTCEEE------ECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHcCCeEE------EecCCCCCCHHHHHHHHHHHHHHhhc
Confidence            4444444333      34556678999999999988876643

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.77  E-value=2e-17  Score=127.16  Aligned_cols=171  Identities=18%  Similarity=0.134  Sum_probs=94.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ...++|+++|.+|+|||||+|+|++......   ...++.......+.+ ++.  .+.||||||..+..           
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~-----------   96 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPES---YTPTVFERYMVNLQV-KGKPVHLHIWDTAGQDDYD-----------   96 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC----------CCCCCEEEEEEEEE-TTEEEEEEEEEC------------------
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCC---CCCccceeEEEEEEE-CCEEEEEEEEECCCchhhh-----------
Confidence            4568999999999999999999998764221   112222222333444 343  78999999965432           


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhh-----cCCc
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR-----ECPK  167 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~-----~~~~  167 (225)
                      .....+...+|++++|+|+.++.+....  .++..+....   ...|+++|+||+|+....  ...+....     ....
T Consensus        97 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~  171 (214)
T 2j1l_A           97 RLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC---KKVPIIVVGCKTDLRKDK--SLVNKLRRNGLEPVTYH  171 (214)
T ss_dssp             --------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECGGGGSCH--HHHHHHHHTTCCCCCHH
T ss_pred             HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhhccc--hhhhhhcccccCcccHH
Confidence            2223456688999999999744222221  2344444332   237999999999987653  22221110     0111


Q ss_pred             hHHHHHHHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158          168 PLKEILQLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG  213 (225)
Q Consensus       168 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~  213 (225)
                      ...++.+..+. .++      ..|+.++.+++++++.|.+.+.+..+
T Consensus       172 ~~~~~~~~~~~~~~~------~~SA~~g~gi~el~~~l~~~~~~~~~  212 (214)
T 2j1l_A          172 RGQEMARSVGAVAYL------ECSARLHDNVHAVFQEAAEVALSSRG  212 (214)
T ss_dssp             HHHHHHHHTTCSEEE------ECBTTTTBSHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHhcCCCEEE------EecCCCCCCHHHHHHHHHHHHHHhhc
Confidence            23445555554 333      34556778999999999988876643

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.77  E-value=2.6e-18  Score=128.56  Aligned_cols=159  Identities=13%  Similarity=0.094  Sum_probs=97.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ..+.++|+++|.+|+|||||+|+|++...... ....+.    ....+.+ ++..+.+|||||.....           .
T Consensus        18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~t~~~----~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~   80 (181)
T 2h17_A           18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGS----NVEEIVI-NNTRFLMWDIGGQESLR-----------S   80 (181)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHTTSCEEE-ECCSSS----SCEEEEE-TTEEEEEEEESSSGGGT-----------C
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCcc-CCcCce----eeEEEEE-CCEEEEEEECCCCHhHH-----------H
Confidence            45679999999999999999999998775222 112222    2234455 67899999999975432           2


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                      .+..+...+|++++|+|+.++.+...  ...++......  ....|+++|+||+|+....  ..++..+. ..      +
T Consensus        81 ~~~~~~~~~d~ii~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~-~~------~  149 (181)
T 2h17_A           81 SWNTYYTNTEFVIVVVDSTDRERISV--TREELYKMLAHEDLRKAGLLIFANKQDVKECM--TVAEISQF-LK------L  149 (181)
T ss_dssp             GGGGGGTTCCEEEEEEETTCTTTHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHH-TT------G
T ss_pred             HHHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhChhhCCCeEEEEEECCCcccCC--CHHHHHHH-hC------c
Confidence            23345678899999999975533322  23333333322  1347999999999986542  22222111 00      0


Q ss_pred             HHcC-CcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158          174 QLCD-NRCVLFDNKTKDTAKRTEQVGKLLSLVNS  206 (225)
Q Consensus       174 ~~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~i~~  206 (225)
                      .... ..+..    ...|+.++.+++++++.|.+
T Consensus       150 ~~~~~~~~~~----~~~Sa~~g~gi~~l~~~l~~  179 (181)
T 2h17_A          150 TSIKDHQWHI----QACCALTGEGLCQGLEWMMS  179 (181)
T ss_dssp             GGCCSSCEEE----EECBTTTTBTHHHHHHHHHT
T ss_pred             ccccCCceEE----EEccCCCCcCHHHHHHHHHh
Confidence            1111 11222    24566777999999998864

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.76  E-value=4.4e-18  Score=131.10  Aligned_cols=163  Identities=16%  Similarity=0.126  Sum_probs=98.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ...++|+|+|.+|+|||||+++++..... ... .+....+........ ++  ..+.||||+|...+.           
T Consensus        11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~-~~~-~~Tig~d~~~k~~~~-~~~~v~l~iwDtaGqe~~~-----------   76 (216)
T 4dkx_A           11 LRKFKLVFLGEQSVGKTSLITRFMYDSFD-NTY-QATIGIDFLSKTMYL-EDRTIRLQLWDTAGLERFR-----------   76 (216)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCC------------CEEEEEEC-SSCEEEEEEECCSCTTTCG-----------
T ss_pred             CCcEEEEEECcCCcCHHHHHHHHHhCCCC-CCc-CCccceEEEEEEEEe-cceEEEEEEEECCCchhhh-----------
Confidence            45689999999999999999999866532 211 111122222223333 33  378899999977542           


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                      .....++..++++++|+|.+++-+-.. ..++..+....+.  ..|+++|.||+|+.....-..++         ..++.
T Consensus        77 ~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~--~~piilVgNK~Dl~~~r~V~~~e---------~~~~a  145 (216)
T 4dkx_A           77 SLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGS--DVIIMLVGNKTDLADKRQVSIEE---------GERKA  145 (216)
T ss_dssp             GGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT--SSEEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred             hHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCC--CCeEEEEeeccchHhcCcccHHH---------HhhHH
Confidence            222345678899999999985432222 2344444444333  37899999999976543212222         34455


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      +..+..++      .+||+++.+|+++++.|.+.+..
T Consensus       146 ~~~~~~~~------e~SAktg~nV~e~F~~i~~~i~~  176 (216)
T 4dkx_A          146 KELNVMFI------ETSAKAGYNVKQLFRRVAAALPG  176 (216)
T ss_dssp             HHHTCEEE------EEBTTTTBSHHHHHHHHHHHC--
T ss_pred             HHhCCeeE------EEeCCCCcCHHHHHHHHHHHHHh
Confidence            55565432      35677889999999998766543

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.76  E-value=1e-17  Score=127.36  Aligned_cols=164  Identities=14%  Similarity=0.122  Sum_probs=96.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ...++|+|+|.+|+|||||+|+|++.......  .+..+.......+.+ ++  ..+.||||||....           .
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~-----------~   88 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDS--NHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQERF-----------R   88 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEEE-TTEEEEEEEECCTTHHHH-----------S
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCccC--CCcccceeEEEEEEE-CCeeeEEEEEcCCCcHhH-----------H
Confidence            45699999999999999999999987643221  222232333334444 44  58999999995322           1


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                      ..+..+...+|++|+|+|+.++.+... ..++..+.....  ...|+++|+||+|+.........+         ..++.
T Consensus        89 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~v~~~~---------~~~~~  157 (200)
T 2o52_A           89 SVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS--PNIVVILCGNKKDLDPEREVTFLE---------ASRFA  157 (200)
T ss_dssp             CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC--TTCEEEEEEECGGGGGGCCSCHHH---------HHHHH
T ss_pred             HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCcccccccCHHH---------HHHHH
Confidence            222234567899999999974322221 223333333222  247999999999976432111111         23344


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ...+..++.      .|+.++.+++++++.|.+.+.++
T Consensus       158 ~~~~~~~~~------~SA~~g~gi~~l~~~l~~~i~~~  189 (200)
T 2o52_A          158 QENELMFLE------TSALTGENVEEAFLKCARTILNK  189 (200)
T ss_dssp             HHTTCEEEE------ECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHcCCEEEE------EeCCCCCCHHHHHHHHHHHHHHH
Confidence            444544333      35566789999999998776553

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.76  E-value=8e-18  Score=123.64  Aligned_cols=161  Identities=15%  Similarity=0.122  Sum_probs=95.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      +.++|+++|.+|+|||||+|+|++......   ...++.......+.+. ....+.+|||||......    ...   . 
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----~~~---~-   70 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEK---YDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA----MRD---L-   70 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCS---CCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT----HHH---H-
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCC---CCCCccceEEEEEEECCEEEEEEEEECCChHHHHH----HHH---H-
Confidence            458999999999999999999997654221   1122222222233331 123789999999875431    111   1 


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                         +...+|++++|+|++++.+... ..+++.+..... ....|+++|+||+|+........++         ..++.+.
T Consensus        71 ---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~  137 (167)
T 1c1y_A           71 ---YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDERVVGKEQ---------GQNLARQ  137 (167)
T ss_dssp             ---HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-CSCCCEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred             ---HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-cCCCcEEEEEECccccccccCCHHH---------HHHHHHH
Confidence               2234699999999974322121 233444444322 2347999999999986543111111         3334444


Q ss_pred             c-CCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          176 C-DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       176 ~-~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                      . +..++      ..|+.++.+++++++.|.+.+
T Consensus       138 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i  165 (167)
T 1c1y_A          138 WCNCAFL------ESSAKSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             TTSCEEE------ECBTTTTBSHHHHHHHHHHHH
T ss_pred             ccCCcEE------EecCCCCCCHHHHHHHHHHHH
Confidence            3 33322      345667789999999998765

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.76  E-value=5.9e-18  Score=128.91  Aligned_cols=169  Identities=16%  Similarity=0.078  Sum_probs=76.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeC---CceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKD---GQVVNVIDTPGLFDSSADSEFVSKEI   93 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~liDtPG~~~~~~~~~~~~~~~   93 (225)
                      ...++|+|+|.+|+|||||+|+|++..........+....+.....+.+++   ...+.||||||..           .+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-----------~~   86 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD-----------LY   86 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTH-----------HH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH-----------HH
Confidence            456899999999999999999999872111111111111123344455522   3479999999963           23


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccccEEEEEecCCCCC-CCcccHHHHhhhcCCchHH
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGK-KISDYMIVVFTGGDELE-DNDETLEDYLGRECPKPLK  170 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~~vv~~k~D~~~-~~~~~~~~~~~~~~~~~~~  170 (225)
                      ...+..+...+|++|+|+|+.++.+... ..++..+...... ....|+++|+||+|... ......+         ...
T Consensus        87 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~---------~~~  157 (208)
T 2yc2_C           87 KEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLD---------MAQ  157 (208)
T ss_dssp             HHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHH---------HHH
T ss_pred             HHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHH---------HHH
Confidence            4455667788999999999974432222 2334444443220 02479999999999865 2211111         134


Q ss_pred             HHHHHcCCcEEEeeCCCcccccc-HHHHHHHHHHHHHHHHHc
Q 036158          171 EILQLCDNRCVLFDNKTKDTAKR-TEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~i~~~~~~~  211 (225)
                      ++.+..+..++      ..|+.+ +.+++++++.|.+.+.+.
T Consensus       158 ~~~~~~~~~~~------~~Sa~~~~~gi~~l~~~i~~~~~~~  193 (208)
T 2yc2_C          158 DWATTNTLDFF------DVSANPPGKDADAPFLSIATTFYRN  193 (208)
T ss_dssp             HHHHHTTCEEE------ECCC-------CHHHHHHHHHHHHH
T ss_pred             HHHHHcCCEEE------EeccCCCCcCHHHHHHHHHHHHHHH
Confidence            55555554333      345566 789999999998876554

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.76  E-value=1.4e-17  Score=126.18  Aligned_cols=176  Identities=14%  Similarity=0.070  Sum_probs=98.2

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158           14 SPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEI   93 (225)
Q Consensus        14 ~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (225)
                      .+....++|+++|.+|+|||||+|.+.+....... .....+.......+.......+.+|||||...+.......    
T Consensus        15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~----   89 (196)
T 3llu_A           15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNET-LFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDY----   89 (196)
T ss_dssp             -----CCEEEEEESTTSSHHHHHHHHHSCCCGGGG-GGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCH----
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHHhcCCCcce-eeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhc----
Confidence            34567899999999999999999999885432211 1111122111111211144689999999987643221000    


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcc--cHHHHhhhcCCchHHH
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDE--TLEDYLGRECPKPLKE  171 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~--~~~~~~~~~~~~~~~~  171 (225)
                          ..++..+|++|+|+|+.++.......+..++.+........|+++|.||+|+......  .......+    ...+
T Consensus        90 ----~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~----~~~~  161 (196)
T 3llu_A           90 ----EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQR----ANDD  161 (196)
T ss_dssp             ----HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHH----HHHH
T ss_pred             ----ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHH----HHHH
Confidence                1223367999999999865334445556666665322335799999999998653200  01111111    1222


Q ss_pred             HHHHc--CCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          172 ILQLC--DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       172 ~~~~~--~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                      +.+..  .....+    ...||.+ .+++++++.+.+.
T Consensus       162 ~~~~~~~~~~~~~----~e~Sa~~-~~v~~~f~~l~~~  194 (196)
T 3llu_A          162 LADAGLEKLHLSF----YLTSIYD-HSIFEAFSKVVQK  194 (196)
T ss_dssp             HHHTTCTTSCEEE----EEECTTS-THHHHHHHHHHHH
T ss_pred             HHHhhhhcCCcce----EEEEech-hhHHHHHHHHHHH
Confidence            33311  112222    2456677 8999999888654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.76  E-value=1.5e-17  Score=123.85  Aligned_cols=169  Identities=14%  Similarity=0.094  Sum_probs=95.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee--CCceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK--DGQVVNVIDTPGLFDSSADSEFVSKEI   93 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (225)
                      ....++|+++|.+|+|||||+|+|++......  ..+..+.......+.+.  ....+.+|||||....           
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----------   71 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQ--YKATIGADFLTKEVTVDGDKVATMQVWDTAGQERF-----------   71 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTT--C---CCCSCEEEEECCSSSCCEEEEEECCC----------------
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcc--cCCccceEEEEEEEEEcCCcEEEEEEEECCCChHh-----------
Confidence            34679999999999999999999998764322  12222233333444442  1347999999996432           


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHH
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK  170 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~  170 (225)
                      ...+..+...+|++|+|+|+.++.+... ..++..+......  ....|+++|+||+|+.........+        ...
T Consensus        72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~--------~~~  143 (182)
T 1ky3_A           72 QSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEK--------SAQ  143 (182)
T ss_dssp             -----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHH--------HHH
T ss_pred             hhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHH--------HHH
Confidence            2333456778999999999974422221 2233344333221  1347999999999975332111111        123


Q ss_pred             HHHH-HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          171 EILQ-LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       171 ~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ++.. ..+..++      ..|+.++.+++++++.|.+.+.+.
T Consensus       144 ~~~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~~  179 (182)
T 1ky3_A          144 ELAKSLGDIPLF------LTSAKNAINVDTAFEEIARSALQQ  179 (182)
T ss_dssp             HHHHHTTSCCEE------EEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCeEE------EEecCCCCCHHHHHHHHHHHHHHh
Confidence            3333 2223333      345566789999999998776543

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.76  E-value=6.4e-18  Score=127.91  Aligned_cols=165  Identities=19%  Similarity=0.176  Sum_probs=100.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ...++|+|+|.+|+|||||+|+|++...........+.+   ....... ++  ..+.||||||..+..    ..   ..
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~---~~~~~~~-~~~~~~~~l~Dt~G~~~~~----~~---~~   74 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDT---YRQVISC-DKSVCTLQITDTTGSHQFP----AM---QR   74 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEE---EEEEEEE-TTEEEEEEEEECCGGGSCH----HH---HH
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccc---eeEEEEE-CCEEEEEEEEeCCChHHhH----HH---HH
Confidence            456999999999999999999999766432211111111   1122223 33  378999999976431    11   11


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                          .+...+|++++|+|++++.+... ..++..+.+........|+++|+||+|+.... ...++         ...+.
T Consensus        75 ----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~---------~~~~~  140 (199)
T 2gf0_A           75 ----LSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE-VDTRE---------AQAVA  140 (199)
T ss_dssp             ----HHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS-SCHHH---------HHHHH
T ss_pred             ----HhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccc-cCHHH---------HHHHH
Confidence                22335699999999974322221 23445555543322347999999999986532 11111         23344


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                      ...+..++      ..|+.++.+++++++.|.+.+.++.
T Consensus       141 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~~~  173 (199)
T 2gf0_A          141 QEWKCAFM------ETSAKMNYNVKELFQELLTLETRRN  173 (199)
T ss_dssp             HHHTCEEE------ECBTTTTBSHHHHHHHHHHHCSSSC
T ss_pred             HHhCCeEE------EEecCCCCCHHHHHHHHHHHHhhhh
Confidence            44454333      3455667899999999988876654

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.76  E-value=1.3e-17  Score=125.20  Aligned_cols=162  Identities=14%  Similarity=0.104  Sum_probs=98.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .+.++|+++|.+|+|||||+|+|++...... .    .|.......+.+ ++..+.+|||||.....           ..
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~----~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~~   76 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-S----PTIGSNVEEIVI-NNTRFLMWDIGGQESLR-----------SS   76 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEE-E----CCSCSSCEEEEE-TTEEEEEEECCC----C-----------GG
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCcC-c----CCCccceEEEEE-CCEEEEEEECCCCHhHH-----------HH
Confidence            4569999999999999999999997664322 1    122222334555 67899999999986432           11


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      +..+...+|++++|+|+.++.+-..  ...++.+....  ....|+++|+||+|+....  ..++.         .+.+.
T Consensus        77 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i---------~~~~~  143 (187)
T 1zj6_A           77 WNTYYTNTEFVIVVVDSTDRERISV--TREELYKMLAHEDLRKAGLLIFANKQDVKECM--TVAEI---------SQFLK  143 (187)
T ss_dssp             GHHHHTTCCEEEEEEETTCTTTHHH--HHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC--CHHHH---------HHHHT
T ss_pred             HHHHhcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhchhhCCCeEEEEEECCCCcCCC--CHHHH---------HHHhC
Confidence            2233457899999999975533222  22333333322  1347999999999986542  22222         11221


Q ss_pred             H--cC-CcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          175 L--CD-NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       175 ~--~~-~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                      .  .. ..+..    ...|+.++.+++++++.|.+.+.+..
T Consensus       144 ~~~~~~~~~~~----~~~Sa~~g~gi~~l~~~l~~~~~~~~  180 (187)
T 1zj6_A          144 LTSIKDHQWHI----QACCALTGEGLCQGLEWMMSRLKIRL  180 (187)
T ss_dssp             GGGCCSSCEEE----EECBTTTTBTHHHHHHHHHHHHCC--
T ss_pred             hhhhcCCCcEE----EEccCCCCcCHHHHHHHHHHHHHHHh
Confidence            1  11 12222    24566778999999999988775553

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.76  E-value=3.2e-17  Score=123.76  Aligned_cols=167  Identities=14%  Similarity=0.033  Sum_probs=101.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ...++|+++|.+|+|||||+|+|++......   ..+++.......+.+ ++  ..+.+|||||..+...          
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~----------   81 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEE---YVPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDR----------   81 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCS---CCCSSCCCEEEEEES-SSCEEEEEEECCCCSSSSTT----------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCC---CCCcccceeEEEEEE-CCEEEEEEEEECCCCcchhH----------
Confidence            4568999999999999999999997753211   122222222233444 34  4789999999875531          


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhh----cC-Cc
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR----EC-PK  167 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~----~~-~~  167 (225)
                       ....+...+|++|+|+|+.++.+....  .++..+.+...   ..|+++|.||+|+....  ...+.+..    .. .+
T Consensus        82 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~  155 (194)
T 2atx_A           82 -LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP---NVPFLLIGTQIDLRDDP--KTLARLNDMKEKPICVE  155 (194)
T ss_dssp             -TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECTTSTTCH--HHHHHHTTTTCCCCCHH
T ss_pred             -HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcccc--cchhhcccccCcccCHH
Confidence             223456788999999999744222221  34445554322   47999999999987542  11111110    00 11


Q ss_pred             hHHHHHHHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          168 PLKEILQLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       168 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      ...++.+..+. .+      ...|+.++.+++++++.|.+.+.
T Consensus       156 ~~~~~~~~~~~~~~------~~~Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          156 QGQKLAKEIGACCY------VECSALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             HHHHHHHHHTCSCE------EECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCcEE------EEeeCCCCCCHHHHHHHHHHHHh
Confidence            23344444443 22      23456677999999999977653

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.75  E-value=2.7e-18  Score=132.52  Aligned_cols=166  Identities=16%  Similarity=0.061  Sum_probs=102.2

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           15 PSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      .....++|+|+|.+|+|||||+|+++............+.+.......... ....+.+|||||.........       
T Consensus        11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~-------   82 (221)
T 3gj0_A           11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GPIKFNVWDTAGQEKFGGLRD-------   82 (221)
T ss_dssp             CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETT-EEEEEEEEEECSGGGTSCCCH-------
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEeCCChHHHhHHHH-------
Confidence            345679999999999999999999654332222122334444443333322 334799999999764432211       


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                          .+...+|++|+|+|++++.+... ..++..+.+..   ...|+++|+||+|+....  ...    +     ...+.
T Consensus        83 ----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~~----~-----~~~~~  144 (221)
T 3gj0_A           83 ----GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKDRK--VKA----K-----SIVFH  144 (221)
T ss_dssp             ----HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS---TTCCEEEEEECTTSSSCS--SCG----G-----GCCHH
T ss_pred             ----HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCcccccc--ccH----H-----HHHHH
Confidence                23447899999999985432222 23334444432   237999999999986543  111    1     22233


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                      ...+..++      ..|+.++.+++++++.|.+.+....
T Consensus       145 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~l~~~~  177 (221)
T 3gj0_A          145 RKKNLQYY------DISAKSNYNFEKPFLWLARKLIGDP  177 (221)
T ss_dssp             HHHTCEEE------ECBGGGTBTTTHHHHHHHHHHHTCT
T ss_pred             HHcCCEEE------EEeCCCCCCHHHHHHHHHHHHHhCc
Confidence            34454433      3466777899999999998876654

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.75  E-value=8.7e-18  Score=143.84  Aligned_cols=168  Identities=20%  Similarity=0.258  Sum_probs=111.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAF-----KSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSK   91 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~-----~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~   91 (225)
                      .+.++|+++|+.++|||||+|+|++....     .......+.|.......+.+ ++..+.||||||+.           
T Consensus        17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh~-----------   84 (482)
T 1wb1_A           17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHA-----------   84 (482)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHH-----------
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECCChH-----------
Confidence            55789999999999999999999987611     01122445666666666777 77899999999963           


Q ss_pred             HHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158           92 EIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE  171 (225)
Q Consensus        92 ~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~  171 (225)
                      .+...+......+|++|+|+|+++.....+.+.+..+...     ..|.++|+||+|....  ...+...++     +++
T Consensus        85 ~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~-----~ip~IvviNK~Dl~~~--~~~~~~~~~-----l~~  152 (482)
T 1wb1_A           85 DLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF-----NIPIIVVITKSDNAGT--EEIKRTEMI-----MKS  152 (482)
T ss_dssp             HHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCBCEEEECTTSSCH--HHHHHHHHH-----HHH
T ss_pred             HHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHc-----CCCEEEEEECCCcccc--hhHHHHHHH-----HHH
Confidence            2333344456678999999999877777777777666542     2677999999998742  234444444     566


Q ss_pred             HHHHc-CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          172 ILQLC-DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       172 ~~~~~-~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ++... +...   ....+.|+.++.++++|++.|.+.+...
T Consensus       153 ~l~~~~~~~~---~~ii~vSA~~g~gI~~L~~~L~~~i~~~  190 (482)
T 1wb1_A          153 ILQSTHNLKN---SSIIPISAKTGFGVDELKNLIITTLNNA  190 (482)
T ss_dssp             HHHHSSSGGG---CCEEECCTTTCTTHHHHHHHHHHHHHHS
T ss_pred             HHhhhccccc---ceEEEEECcCCCCHHHHHHHHHHhhcCc
Confidence            66655 3210   1123456677799999999999987643

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.75  E-value=5.9e-19  Score=149.98  Aligned_cols=164  Identities=17%  Similarity=0.201  Sum_probs=101.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      ..++|+++|.+|+|||||+|+|++...... ...+++|.+.....+.+ ++..+.||||||+.++....+   ..-....
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v-~~~~gtT~d~~~~~i~~-~g~~v~liDT~G~~~~~~~ve---~~gi~~~  297 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIV-TDLPGTTRDVVESQLVV-GGIPVQVLDTAGIRETSDQVE---KIGVERS  297 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCC-SCCTTCCHHHHHHEEEE-TTEEEEECC----------------------
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccc-cCCCCeeEEEEEEEEEE-CCEEEEEEECCccccchhHHH---HHHHHHH
Confidence            357899999999999999999998764333 23456666665555666 788999999999875421111   1111223


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      ......+|++++|+|+.++.+..+..+++.+..       .|+++|+||+|+....  ... ...+     +.     .+
T Consensus       298 ~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~-------~piivV~NK~Dl~~~~--~~~-~~~~-----~~-----~~  357 (462)
T 3geh_A          298 RQAANTADLVLLTIDAATGWTTGDQEIYEQVKH-------RPLILVMNKIDLVEKQ--LIT-SLEY-----PE-----NI  357 (462)
T ss_dssp             -CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT-------SCEEEEEECTTSSCGG--GST-TCCC-----CT-----TC
T ss_pred             hhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC-------CcEEEEEECCCCCcch--hhH-HHHH-----hc-----cC
Confidence            356678999999999987777777555554432       6999999999986543  111 0000     00     01


Q ss_pred             CcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                      .+      ....|++++.++++|++.|.+.+....
T Consensus       358 ~~------~i~iSAktg~Gi~eL~~~i~~~~~~~~  386 (462)
T 3geh_A          358 TQ------IVHTAAAQKQGIDSLETAILEIVQTGK  386 (462)
T ss_dssp             CC------EEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred             Cc------EEEEECCCCCCHHHHHHHHHHHHhccC
Confidence            11      234566677899999999988876643

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.75  E-value=2.7e-17  Score=127.16  Aligned_cols=164  Identities=18%  Similarity=0.116  Sum_probs=99.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ...++|+|+|.+|+|||||+|+|++.......  .+..+.......+.+ ++  ..+.||||||...+..          
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~----------   77 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDS--KSTIGVEFATRTLEI-EGKRIKAQIWDTAGQERYRA----------   77 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTTC----------
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCcccceeEEEEEEE-CCEEEEEEEEECCCccchhh----------
Confidence            45689999999999999999999987643221  222233333334455 44  4899999999765432          


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                       .+..+...+|++|+|+|+.++.+... ..++..+.....  ...|+++|+||+|+........++         ..++.
T Consensus        78 -~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~~~v~~~~---------~~~~~  145 (223)
T 3cpj_B           78 -ITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD--DNVAVGLIGNKSDLAHLRAVPTEE---------SKTFA  145 (223)
T ss_dssp             -CCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGGGCCSCHHH---------HHHHH
T ss_pred             -hHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccccccCHHH---------HHHHH
Confidence             12345678899999999974432222 223334433321  247999999999986532111111         33444


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ...+..++      ..|+.++.+++++++.|.+.+.+.
T Consensus       146 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~~  177 (223)
T 3cpj_B          146 QENQLLFT------ETSALNSENVDKAFEELINTIYQK  177 (223)
T ss_dssp             HHTTCEEE------ECCCC-CCCHHHHHHHHHHHHTTC
T ss_pred             HHcCCEEE------EEeCCCCCCHHHHHHHHHHHHHHH
Confidence            44454333      235566789999999998877654

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.75  E-value=3.3e-17  Score=122.61  Aligned_cols=162  Identities=15%  Similarity=0.102  Sum_probs=100.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ...++|+++|.+|+|||||+|+|.+......     ..|.......+.+ ++..+.+|||||....           ...
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~-----~~t~g~~~~~~~~-~~~~l~i~Dt~G~~~~-----------~~~   76 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDISHI-----TPTQGFNIKSVQS-QGFKLNVWDIGGQRKI-----------RPY   76 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECSSCGGG-----------HHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcc-----cCcCCeEEEEEEE-CCEEEEEEECCCCHHH-----------HHH
Confidence            5679999999999999999999998753211     1222233445566 6789999999996532           222


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      +..+...+|++++|+|+.++.+...  ...++.+.+..  ....|+++|.||+|+....  ..++..+. ..      +.
T Consensus        77 ~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~-~~------~~  145 (181)
T 1fzq_A           77 WRSYFENTDILIYVIDSADRKRFEE--TGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEG-LN------LH  145 (181)
T ss_dssp             HHHHHTTCSEEEEEEETTCGGGHHH--HHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHH-TT------GG
T ss_pred             HHHHhCCCCEEEEEEECcCHHHHHH--HHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHHHHHHH-hC------ch
Confidence            3344567899999999974432222  22333433322  1347999999999987553  22222111 00      00


Q ss_pred             HcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          175 LCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       175 ~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      .... .+..    ...||.++.+++++++.|.+.+.+
T Consensus       146 ~~~~~~~~~----~~~Sa~~g~gi~~l~~~l~~~~~~  178 (181)
T 1fzq_A          146 TIRDRVWQI----QSCSALTGEGVQDGMNWVCKNVNA  178 (181)
T ss_dssp             GCCSSCEEE----EECCTTTCTTHHHHHHHHHHTC--
T ss_pred             hccCCceEE----EEccCCCCCCHHHHHHHHHHHHHh
Confidence            1111 1222    345677789999999999876644

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.75  E-value=5e-17  Score=124.94  Aligned_cols=173  Identities=13%  Similarity=0.039  Sum_probs=101.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ....++|+|+|.+|+|||||+|+|++......   ...++.......+.+. ....+.||||||.....           
T Consensus        24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------   89 (214)
T 3q3j_B           24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPET---YVPTVFENYTACLETEEQRVELSLWDTSGSPYYD-----------   89 (214)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCCSS---CCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGT-----------
T ss_pred             ccceEEEEEECcCCCCHHHHHHHHhcCCCCCC---cCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHH-----------
Confidence            45679999999999999999999997764222   1111112122223331 23478999999975432           


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhh----hcCCch
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLG----RECPKP  168 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~----~~~~~~  168 (225)
                      .....++..+|++|+|+|++++.+...  ..++..+....   ...|+++|.||+|+..... .......    ......
T Consensus        90 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~v~~~~  165 (214)
T 3q3j_B           90 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC---PSTRVLLIGCKTDLRTDLS-TLMELSHQKQAPISYEQ  165 (214)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC---TTSEEEEEEECGGGGGCHH-HHHHHHHTTCCCCCHHH
T ss_pred             HHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccchh-hhhhhcccccCccCHHH
Confidence            223356778999999999985433222  23445555543   2379999999999865310 0000000    001112


Q ss_pred             HHHHHHHcCC-cEEEeeCCCccccccHHH-HHHHHHHHHHHHHHcC
Q 036158          169 LKEILQLCDN-RCVLFDNKTKDTAKRTEQ-VGKLLSLVNSVIVQNG  212 (225)
Q Consensus       169 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-v~~l~~~i~~~~~~~~  212 (225)
                      ..++....+. .++      ..||.++.+ ++++++.+.+.+.+..
T Consensus       166 ~~~~~~~~~~~~~~------e~SA~~g~g~v~~lf~~l~~~~~~~~  205 (214)
T 3q3j_B          166 GCAIAKQLGAEIYL------EGSAFTSEKSIHSIFRTASMLCLNKP  205 (214)
T ss_dssp             HHHHHHHHTCSEEE------ECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHcCCCEEE------EeccCCCcccHHHHHHHHHHHHhccC
Confidence            3445555554 332      345566788 9999999988876554

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.75  E-value=3.9e-17  Score=124.36  Aligned_cols=166  Identities=12%  Similarity=0.064  Sum_probs=101.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEI   93 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~   93 (225)
                      ....++|+|+|.+|+|||||+|+|++......  ..+..+.......+.+ ++  ..+.||||||......         
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~---------   72 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQ--YKATIGADFLTKEVMV-DDRLVTMQIWDTAGQERFQS---------   72 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSS--CCCCCSEEEEEEEEES-SSCEEEEEEEEECSSGGGSC---------
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCC--CCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHH---------
Confidence            35679999999999999999999998764322  2233334444444444 33  4799999999754321         


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHH
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK  170 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~  170 (225)
                        .+......+|++|+|+|+.++.+... ..++..+......  ....|+++|+||+|+.... ...++         ..
T Consensus        73 --~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~---------~~  140 (207)
T 1vg8_A           73 --LGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-VATKR---------AQ  140 (207)
T ss_dssp             --SCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-SCHHH---------HH
T ss_pred             --hHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccc-cCHHH---------HH
Confidence              12235567899999999974422221 2233334333321  1247999999999986322 11111         23


Q ss_pred             HHHH-HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          171 EILQ-LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       171 ~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ++.. ..+..++      ..|+.++.+++++++.|.+.+.+.
T Consensus       141 ~~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~~~  176 (207)
T 1vg8_A          141 AWCYSKNNIPYF------ETSAKEAINVEQAFQTIARNALKQ  176 (207)
T ss_dssp             HHHHHTTSCCEE------ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCceEE------EEeCCCCCCHHHHHHHHHHHHHHh
Confidence            3333 2222322      345667789999999998777553

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.75  E-value=1.6e-17  Score=140.77  Aligned_cols=168  Identities=16%  Similarity=0.142  Sum_probs=106.6

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhCCcccccc-----------------------------CCCCCceeEEEEEEEE
Q 036158           14 SPSNGERNLVLVGRTGNGKSATANSILGKRAFKSK-----------------------------AGSSGVTKTCEMQRTM   64 (225)
Q Consensus        14 ~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~-----------------------------~~~~~~t~~~~~~~~~   64 (225)
                      .+..+.++|+++|++|+|||||+|+|++.......                             ....+.|.+.....+.
T Consensus        12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~   91 (439)
T 3j2k_7           12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE   91 (439)
T ss_pred             CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence            34567899999999999999999999765321110                             1124678888777788


Q ss_pred             eeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCC-------HHHHHHHHHHHHHhccccc
Q 036158           65 LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFS-------EEEGAAIHILESLFGKKIS  137 (225)
Q Consensus        65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~-------~~~~~~~~~l~~~~~~~~~  137 (225)
                      + ++..+.||||||+.++           ...+......+|++|+|+|++++..       ..+.+.+..+... +   .
T Consensus        92 ~-~~~~~~iiDTPGh~~f-----------~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~-~---v  155 (439)
T 3j2k_7           92 T-EKKHFTILDAPGHKSF-----------VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-G---V  155 (439)
T ss_pred             c-CCeEEEEEECCChHHH-----------HHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc-C---C
Confidence            7 7789999999997543           2223334557899999999986543       3445555544432 1   1


Q ss_pred             ccEEEEEecCCCCCCC--cccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHH
Q 036158          138 DYMIVVFTGGDELEDN--DETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLS  202 (225)
Q Consensus       138 ~~~~vv~~k~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~  202 (225)
                      +++++++||+|+....  ....++...+     +.++++.++......-...+.||.++.++.++.+
T Consensus       156 ~~iIvviNK~Dl~~~~~~~~~~~~i~~~-----~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          156 KHLIVLINKMDDPTVNWSNERYEECKEK-----LVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             CeEEEEeecCCCcccchHHHHHHHHHHH-----HHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            3489999999985432  1223333333     5666666554210001123456677788887443

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.75  E-value=5.8e-19  Score=134.13  Aligned_cols=164  Identities=18%  Similarity=0.130  Sum_probs=96.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ...++|+|+|.+|+|||||+|+|++.......  .+..+.......+.+ ++  ..+.||||||.......         
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~---------   98 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTI---------   98 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHH--HHHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCCC---------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCc--CCcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHHH---------
Confidence            44689999999999999999999986642221  223334444455555 44  47999999997654321         


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc-cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK-KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                        +..+...+|++|+|+|+.++.+..  ....++..+... ....|+++|+||+|+.......         .....++.
T Consensus        99 --~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~---------~~~~~~~~  165 (199)
T 3l0i_B           99 --TSSYYRGAHGIIVVYDVTDQESFN--NVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVD---------YTTAKEFA  165 (199)
T ss_dssp             --SCC--CCCSEEEECC-CCCSHHHH--HHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCC---------SCC-CHHH
T ss_pred             --HHHHhhcCCEEEEEEECCCHHHHH--HHHHHHHHHHHhccCCCCEEEEEECccCCccccCC---------HHHHHHHH
Confidence              223566889999999997543222  222333333221 1247999999999986543111         11123344


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ...+..      ....|+.++.+++++++.|.+.+.+.
T Consensus       166 ~~~~~~------~~~vSA~~g~gv~~l~~~l~~~l~~~  197 (199)
T 3l0i_B          166 DSLGIP------FLETSAKNATNVEQSFMTMAAEIKKR  197 (199)
T ss_dssp             HTTTCC------BCCCCC---HHHHHHHHHHTTTTTTT
T ss_pred             HHcCCe------EEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            444432      34567788899999999997765543

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.75  E-value=4.7e-17  Score=123.73  Aligned_cols=167  Identities=16%  Similarity=0.138  Sum_probs=101.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ...++|+++|.+|+|||||+|++.+.......  .+..+.... ..+.+ ++  ..+.||||||..+..           
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~-----------   87 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVY--VPTVFENYI-ADIEV-DGKQVELALWDTAGQEDYD-----------   87 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSC--CCSSCCCCE-EEEEE-TTEEEEEEEECCCCSGGGT-----------
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCccc--CCcccceEE-EEEEE-CCEEEEEEEEECCCchhHH-----------
Confidence            45689999999999999999999977643221  122222111 22344 44  378999999965432           


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhh----c-CCc
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR----E-CPK  167 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~----~-~~~  167 (225)
                      .....+...+|++|+|+|++++.+...  ..++..+.+...   ..|+++|+||+|+....  ...+...+    . ..+
T Consensus        88 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~  162 (201)
T 2gco_A           88 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRQDE--HTRRELAKMKQEPVRSE  162 (201)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGTTCH--HHHHHHHTTTCCCCCHH
T ss_pred             HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEecHHhhcCc--cchhhhcccccCcCCHH
Confidence            222345678899999999974322222  234444544322   37999999999987652  22211111    0 011


Q ss_pred             hHHHHHHHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          168 PLKEILQLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       168 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      ...++....+. .++      ..|+.++.+++++++.|.+.+.
T Consensus       163 ~~~~~~~~~~~~~~~------~~SA~~g~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          163 EGRDMANRISAFGYL------ECSAKTKEGVREVFEMATRAGL  199 (201)
T ss_dssp             HHHHHHHHTTCSEEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcEEE------EeeCCCCCCHHHHHHHHHHHHh
Confidence            23444444443 222      3456677999999999987653

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.75  E-value=3.2e-17  Score=130.47  Aligned_cols=163  Identities=15%  Similarity=0.188  Sum_probs=102.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      .++|+++|.+|+|||||+|+|++.... . ...+++|.......+..  +..+.+|||||.........  .+.+.....
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~-v-~~~pg~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~~~--~e~v~~~~~   76 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQR-V-GNWPGVTVERKSGLVKK--NKDLEIQDLPGIYSMSPYSP--EAKVARDYL   76 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCC-C-CSSSCCCCSCEEEECTT--CTTEEEEECCCCSCSSCSSH--HHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCc-c-cCCCCCcEEEEEEEEec--CCeEEEEECCCcCccCCCCh--HHHHHHHHH
Confidence            478999999999999999999997643 2 23456666554444432  66899999999987643221  122222211


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN  178 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (225)
                      . ...+|++++|+|+.. . .   ..+.+..++..  ...|+++|+||+|.....  .        .......+.+..+.
T Consensus        77 ~-~~~~d~vi~V~D~t~-~-e---~~~~~~~~l~~--~~~p~ilv~NK~Dl~~~~--~--------~~~~~~~l~~~lg~  138 (272)
T 3b1v_A           77 L-SQRADSILNVVDATN-L-E---RNLYLTTQLIE--TGIPVTIALNMIDVLDGQ--G--------KKINVDKLSYHLGV  138 (272)
T ss_dssp             H-TTCCSEEEEEEEGGG-H-H---HHHHHHHHHHH--TCSCEEEEEECHHHHHHT--T--------CCCCHHHHHHHHTS
T ss_pred             h-cCCCCEEEEEecCCc-h-H---hHHHHHHHHHh--cCCCEEEEEEChhhCCcC--C--------cHHHHHHHHHHcCC
Confidence            1 146899999999973 2 1   12223333221  247999999999965322  1        11123444444454


Q ss_pred             cEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          179 RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      +++      +.||.++.++++|++.|.+.+...
T Consensus       139 ~vi------~~SA~~g~gi~el~~~i~~~~~~~  165 (272)
T 3b1v_A          139 PVV------ATSALKQTGVDQVVKKAAHTTTST  165 (272)
T ss_dssp             CEE------ECBTTTTBSHHHHHHHHHHSCTTT
T ss_pred             CEE------EEEccCCCCHHHHHHHHHHHHhhc
Confidence            433      345667799999999998776543

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.74  E-value=3.7e-17  Score=122.19  Aligned_cols=170  Identities=15%  Similarity=0.063  Sum_probs=102.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ...++|+++|.+|+|||||+|++++......   ...++.......+.+ ++.  .+.+|||||.....           
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------   67 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGE---YIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYD-----------   67 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSS---CCCCSCCEEEEEEEE-TTEEEEEEEECCCCSGGGT-----------
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCC---cCCcccceeEEEEEE-CCEEEEEEEEECCCCHhHH-----------
Confidence            3568999999999999999999997654222   112222222223344 443  57799999986432           


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhh---hc-CCch
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLG---RE-CPKP  168 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~---~~-~~~~  168 (225)
                      .....+...+|++++|+|++++.+..+.  .++..+.+..+   ..|+++|+||+|+.... ...+....   +. ....
T Consensus        68 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~  143 (186)
T 1mh1_A           68 RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDDK-DTIEKLKEKKLTPITYPQ  143 (186)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHHTCH-HHHHHHHHTTCCCCCHHH
T ss_pred             HHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEcccccccc-hhhhhhcccccccCCHHH
Confidence            2223456788999999999754332222  24445554332   47999999999986542 11111111   00 0112


Q ss_pred             HHHHHHHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          169 LKEILQLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       169 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ..++....+. +++      ..|+.++.+++++++.|.+.+.+.
T Consensus       144 ~~~~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~~~  181 (186)
T 1mh1_A          144 GLAMAKEIGAVKYL------ECSALTQRGLKTVFDEAIRAVLCP  181 (186)
T ss_dssp             HHHHHHHTTCSEEE------ECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred             HHHHHHhcCCcEEE------EecCCCccCHHHHHHHHHHHHhcc
Confidence            3344444443 322      345667799999999998877543

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.74  E-value=2.7e-17  Score=124.51  Aligned_cols=164  Identities=18%  Similarity=0.169  Sum_probs=97.6

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEI   93 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~   93 (225)
                      ....++|+|+|.+|+|||||+|+|++...... .  ..++.......+.+ ++  ..+.+|||||..+     ....   
T Consensus        25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-~--~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----~~~~---   92 (196)
T 2atv_A           25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWE-Y--DPTLESTYRHQATI-DDEVVSMEILDTAGQED-----TIQR---   92 (196)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHSCCCSC-C--CTTCCEEEEEEEEE-TTEEEEEEEEECCCCCC-----CHHH---
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCcc-c--CCCCCceEEEEEEE-CCEEEEEEEEECCCCCc-----ccch---
Confidence            35679999999999999999999998764222 1  11111122223344 33  4699999999875     1111   


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI  172 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (225)
                      ..    +...+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+........++         ..++
T Consensus        93 ~~----~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~---------~~~~  158 (196)
T 2atv_A           93 EG----HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHSRQVSTEE---------GEKL  158 (196)
T ss_dssp             HH----HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGGCCSCHHH---------HHHH
T ss_pred             hh----hhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECcccccccccCHHH---------HHHH
Confidence            11    2234599999999974322221 223444444322 1247999999999986532111111         2334


Q ss_pred             HHHcCCcEEEeeCCCccccccHH-HHHHHHHHHHHHHHHc
Q 036158          173 LQLCDNRCVLFDNKTKDTAKRTE-QVGKLLSLVNSVIVQN  211 (225)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~~i~~~~~~~  211 (225)
                      .+..+..++      ..|+..+. +++++++.|.+.+.+.
T Consensus       159 ~~~~~~~~~------~~Sa~~g~~gi~~l~~~l~~~i~~~  192 (196)
T 2atv_A          159 ATELACAFY------ECSACTGEGNITEIFYELCREVRRR  192 (196)
T ss_dssp             HHHHTSEEE------ECCTTTCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhCCeEE------EECCCcCCcCHHHHHHHHHHHHHhh
Confidence            444444333      23455667 9999999998776554

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.74  E-value=9.4e-17  Score=121.31  Aligned_cols=161  Identities=11%  Similarity=0.076  Sum_probs=97.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .+.++|+|+|.+|+|||||+|++++......     ..|.......+.+ .+..+.+|||||.......           
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~-----------   89 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNICFTVWDVGGQDKIRPL-----------   89 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECC-----CTT-----------
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCcccc-----CCcCceeEEEEEE-CCEEEEEEECCCCHhHHHH-----------
Confidence            5679999999999999999999987664221     2233344445566 7789999999998654221           


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      +..+...+|++++|+|+.++.+-.  ....++.......  ...|+++|+||+|+....  ..+++... ..      ..
T Consensus        90 ~~~~~~~~d~iilv~D~~~~~s~~--~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~-~~------~~  158 (192)
T 2b6h_A           90 WRHYFQNTQGLIFVVDSNDRERVQ--ESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDK-LG------LQ  158 (192)
T ss_dssp             HHHHHHTCCEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHH-TT------GG
T ss_pred             HHHHhccCCEEEEEEECCCHHHHH--HHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHH-hC------cc
Confidence            112334679999999997543222  2334444433221  247999999999986542  22332222 00      00


Q ss_pred             HcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          175 LCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       175 ~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      .... .+..    ...|+.++.+++++++.|.+.+.
T Consensus       159 ~~~~~~~~~----~~~SA~~g~gi~~l~~~l~~~i~  190 (192)
T 2b6h_A          159 HLRSRTWYV----QATCATQGTGLYDGLDWLSHELS  190 (192)
T ss_dssp             GCSSCCEEE----EECBTTTTBTHHHHHHHHHHHTT
T ss_pred             cccCCceEE----EECcCCCcCCHHHHHHHHHHHHh
Confidence            1111 1222    34566778999999999977654

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.74  E-value=8.2e-17  Score=122.97  Aligned_cols=169  Identities=17%  Similarity=0.121  Sum_probs=101.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ...++|+++|.+|+|||||+|+|++......   ...++.......+.+ ++  ..+.||||||..+...          
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~----------   88 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEV---YVPTVFENYVADIEV-DGKQVELALWDTAGQEDYDR----------   88 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC----------CCEEEEEEEE-TTEEEEEEEEECTTCTTCTT----------
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCc---CCCcccceEEEEEEE-CCEEEEEEEEECCCcHHHHH----------
Confidence            4468999999999999999999998764322   111121222222444 44  3789999999875531          


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhc----C-Cc
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRE----C-PK  167 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~----~-~~  167 (225)
                       ....+...+|++|+|+|++++.+...  ..++..+.+...   ..|+++|+||+|+....  ...+.+.+.    . ..
T Consensus        89 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~  162 (207)
T 2fv8_A           89 -LRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP---NVPIILVANKKDLRSDE--HVRTELARMKQEPVRTD  162 (207)
T ss_dssp             -TGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGGGCH--HHHHHHHHTTCCCCCHH
T ss_pred             -HHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhhhccc--cchhhhhhcccCCCCHH
Confidence             22245678899999999974322222  234445544322   37999999999987542  222211110    0 01


Q ss_pred             hHHHHHHHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          168 PLKEILQLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       168 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ...++....+. .+      ...|+.++.++++|++.|.+.+.+.
T Consensus       163 ~~~~~~~~~~~~~~------~~~SA~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          163 DGRAMAVRIQAYDY------LECSAKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             HHHHHHHHTTCSEE------EECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHhcCCCEE------EEeeCCCCCCHHHHHHHHHHHHHHH
Confidence            12333334343 22      2346667799999999998877654

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.74  E-value=5.4e-18  Score=144.69  Aligned_cols=160  Identities=21%  Similarity=0.282  Sum_probs=107.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCC-CCCCCcHHH-HHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF-DSSADSEFV-SKEIVKC   96 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~-~~~~~~~~~-~~~~~~~   96 (225)
                      .++|+++|.+|+|||||+|+|++.....+ ...+++|.+.....+.+ ++..+.||||||+. ++....+.. ...... 
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~v-s~~~gTT~d~~~~~i~~-~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~-  319 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIV-TDIPGTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIERTLQ-  319 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCC-CCSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHHHH-
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCcc-CCCCCeeeeeEEEEEec-CCeEEEEEECCCccccchhhHHHHHHHHHHH-
Confidence            37999999999999999999998764323 33566777776667777 78899999999997 543221111 111122 


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                         +...+|++|+|+|+.++.+..+.++++.+    .   .+|+++|+||+|+....  ..++         +.+... .
T Consensus       320 ---~~~~aD~vl~VvD~s~~~s~~~~~il~~l----~---~~piivV~NK~DL~~~~--~~~~---------~~~~~~-~  377 (482)
T 1xzp_A          320 ---EIEKADIVLFVLDASSPLDEEDRKILERI----K---NKRYLVVINKVDVVEKI--NEEE---------IKNKLG-T  377 (482)
T ss_dssp             ---HHHHCSEEEEEEETTSCCCHHHHHHHHHH----T---TSSEEEEEEECSSCCCC--CHHH---------HHHHHT-C
T ss_pred             ---HhhcccEEEEEecCCCCCCHHHHHHHHHh----c---CCCEEEEEECccccccc--CHHH---------HHHHhc-C
Confidence               23356999999999867676665554333    2   37999999999986431  2211         222221 1


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      +.++      ...|+.++.++++|++.|.+.+.
T Consensus       378 ~~~~------i~iSAktg~Gi~eL~~~l~~~~~  404 (482)
T 1xzp_A          378 DRHM------VKISALKGEGLEKLEESIYRETQ  404 (482)
T ss_dssp             STTE------EEEEGGGTCCHHHHHHHHHHHTH
T ss_pred             CCcE------EEEECCCCCCHHHHHHHHHHHHh
Confidence            1222      34567778999999999988654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.74  E-value=1e-16  Score=132.56  Aligned_cols=174  Identities=14%  Similarity=0.121  Sum_probs=103.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (225)
                      +.|+++|.+|+|||||+|+|++.... . ....++|.+.....+.+ ++..+.++||||+... . .....+.+...+. 
T Consensus       180 ~~V~lvG~~naGKSTLln~L~~~~~~-~-~~~~~~T~d~~~~~i~~-~g~~v~l~DT~G~i~~-l-p~~lve~f~~tl~-  253 (364)
T 2qtf_A          180 PSIGIVGYTNSGKTSLFNSLTGLTQK-V-DTKLFTTMSPKRYAIPI-NNRKIMLVDTVGFIRG-I-PPQIVDAFFVTLS-  253 (364)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEE-TTEEEEEEECCCBCSS-C-CGGGHHHHHHHHH-
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCCcc-c-cCCcccccCCEEEEEEE-CCEEEEEEeCCCchhc-C-CHHHHHHHHHHHH-
Confidence            45999999999999999999988742 2 23445666666666777 6789999999998532 1 1223333433332 


Q ss_pred             cCCCccEEEEEEeCCCCC--CHHHHH-HHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158          100 TKDGIHAVLVVFSVRNRF--SEEEGA-AIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus       100 ~~~~~~~ii~v~~~~~~~--~~~~~~-~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      ....+|++++|+|+.++.  ...... ..+.+... +. ...|+++|.||+|.....   .......     +..+....
T Consensus       254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l-~~-~~~p~ilV~NK~Dl~~~~---~~~~~~~-----~~~l~~~l  323 (364)
T 2qtf_A          254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREI-GV-SGKPILVTLNKIDKINGD---LYKKLDL-----VEKLSKEL  323 (364)
T ss_dssp             GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH-TC-CSCCEEEEEECGGGCCSC---HHHHHHH-----HHHHHHHH
T ss_pred             HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHh-Cc-CCCCEEEEEECCCCCCch---HHHHHHH-----HHHHHHHh
Confidence            455789999999987442  111111 22333332 21 237899999999987542   2211111     22223333


Q ss_pred             -CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158          177 -DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG  213 (225)
Q Consensus       177 -~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~  213 (225)
                       .....    ..+.|+.++.++++|++.|.+++..+..
T Consensus       324 ~~~~~~----~~~~SA~~g~gi~~L~~~I~~~l~~~~~  357 (364)
T 2qtf_A          324 YSPIFD----VIPISALKRTNLELLRDKIYQLATQLSL  357 (364)
T ss_dssp             CSCEEE----EEECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred             cCCCCc----EEEEECCCCcCHHHHHHHHHHHhcccCC
Confidence             21111    1456677789999999999999888764

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.74  E-value=1.1e-17  Score=135.76  Aligned_cols=178  Identities=12%  Similarity=0.119  Sum_probs=101.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCC----CCC--ceeEE--------------------------------
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAG----SSG--VTKTC--------------------------------   58 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~----~~~--~t~~~--------------------------------   58 (225)
                      ...++|+|+|.+|+|||||+|+|+|....+....    .+.  .++..                                
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE  101 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence            4568999999999999999999999876333211    010  00000                                


Q ss_pred             -------------------EEEEEEeeCCceEEEEeCCCCCCCCC--CcHHHHHHHHHHHhhcCCCccEEEEEEeC-CCC
Q 036158           59 -------------------EMQRTMLKDGQVVNVIDTPGLFDSSA--DSEFVSKEIVKCIGMTKDGIHAVLVVFSV-RNR  116 (225)
Q Consensus        59 -------------------~~~~~~~~~~~~~~liDtPG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ii~v~~~-~~~  116 (225)
                                         ....+..+.+..+.||||||+.+...  ........+...+..+...+|++++|++. +..
T Consensus       102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~  181 (315)
T 1jwy_B          102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD  181 (315)
T ss_dssp             HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred             HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence                               00011222456899999999975321  11122334445555566678999999986 434


Q ss_pred             CCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCcccccc--
Q 036158          117 FSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKR--  193 (225)
Q Consensus       117 ~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  193 (225)
                      +...+ ..+++.+..     ...|+++|+||+|....... ..+....        .+..++..+..+.+   .++.+  
T Consensus       182 ~~~~~~~~i~~~~~~-----~~~~~i~v~NK~Dl~~~~~~-~~~~~~~--------~~~~~~~~~~~v~~---~sa~~~~  244 (315)
T 1jwy_B          182 LANSDALQLAKEVDP-----EGKRTIGVITKLDLMDKGTD-AMEVLTG--------RVIPLTLGFIGVIN---RSQEDII  244 (315)
T ss_dssp             STTCSHHHHHHHHCS-----SCSSEEEEEECTTSSCSSCC-CHHHHTT--------SSSCCTTCEEECCC---CCHHHHS
T ss_pred             hhhhHHHHHHHHhCC-----CCCcEEEEEcCcccCCcchH-HHHHHhC--------CCccCCCCeEEEec---CChhhhc
Confidence            44333 244444432     24799999999998765411 1111111        00111233443333   34444  


Q ss_pred             -HHHHHHHHHHHHHHHHHc
Q 036158          194 -TEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       194 -~~~v~~l~~~i~~~~~~~  211 (225)
                       +.++.++++.+.+++++.
T Consensus       245 ~~~gv~~l~~~~~~~~~~~  263 (315)
T 1jwy_B          245 AKKSIRESLKSEILYFKNH  263 (315)
T ss_dssp             SSCCHHHHHHHHHHHHHTC
T ss_pred             cCCCHHHHHHHHHHHHhCC
Confidence             678999999999888764

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.74  E-value=5.7e-17  Score=121.50  Aligned_cols=169  Identities=14%  Similarity=0.090  Sum_probs=99.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ...++|+++|.+|+|||||+|+|.+...... . .+... ......+.+. ....+.+|||||...+.           .
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-~-~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~   70 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPEN-Y-VPTVF-ENYTASFEIDTQRIELSLWDTSGSPYYD-----------N   70 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSS-C-CCCSE-EEEEEEEECSSCEEEEEEEEECCSGGGT-----------T
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcCCCCCC-C-CCccc-eeEEEEEEECCEEEEEEEEECCCChhhh-----------h
Confidence            4568999999999999999999997654211 1 11111 1112233331 22478999999975432           1


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhh---cC-CchH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR---EC-PKPL  169 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~---~~-~~~~  169 (225)
                      ....+...+|++|+|+|+.++.+...  ..++..+.+...   ..|+++|.||+|+.... ....++...   .. .+..
T Consensus        71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~  146 (184)
T 1m7b_A           71 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQG  146 (184)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHHH
T ss_pred             hHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEEcchhhcch-hhHhhhhhcccCCCCHHHH
Confidence            22345678899999999975432222  223344444322   37999999999986432 111111110   00 1113


Q ss_pred             HHHHHHcCC-cEEEeeCCCccccc-cHHHHHHHHHHHHHHHH
Q 036158          170 KEILQLCDN-RCVLFDNKTKDTAK-RTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       170 ~~~~~~~~~-~~~~~~~~~~~~~~-~~~~v~~l~~~i~~~~~  209 (225)
                      .++.+..+. .++      ..|+. .+.+++++++.+.+.+-
T Consensus       147 ~~~~~~~~~~~~~------e~Sa~~~~~gi~~l~~~i~~~~l  182 (184)
T 1m7b_A          147 ANMAKQIGAATYI------ECSALQSENSVRDIFHVATLACV  182 (184)
T ss_dssp             HHHHHHHTCSEEE------ECBTTTBHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCcEEE------EeeecCCCcCHHHHHHHHHHHHh
Confidence            444444442 222      34555 57899999999987654

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.73  E-value=5.9e-17  Score=122.80  Aligned_cols=170  Identities=20%  Similarity=0.166  Sum_probs=99.1

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHH
Q 036158           15 PSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKE   92 (225)
Q Consensus        15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~   92 (225)
                      +....++|+|+|.+|+|||||+|+|.+.......  .+.++.......+.+ ++.  .+.+|||||.....   .    .
T Consensus        19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~---~----~   88 (195)
T 3cbq_A           19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAH--EPENPEDTYERRIMV-DKEEVTLVVYDIWEQGDAG---G----W   88 (195)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGG--TTTSCTTEEEEEEEE-TTEEEEEEEECCCCCSGGG---H----H
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccC--CCCcccceEEEEEEE-CCEEEEEEEEecCCCccch---h----h
Confidence            3466799999999999999999999865432111  122233333333444 443  67889999976321   1    1


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158           93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE  171 (225)
Q Consensus        93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~  171 (225)
                      +..   .++..+|++|+|+|++++.+-.. ..++..+..... ....|+++|.||+|+........++         ..+
T Consensus        89 ~~~---~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~---------~~~  155 (195)
T 3cbq_A           89 LRD---HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARSREVSLEE---------GRH  155 (195)
T ss_dssp             HHH---HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCTTTCCSCHHH---------HHH
T ss_pred             hHH---HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeechhccccCCcCHHH---------HHH
Confidence            111   12335699999999974322111 223333333211 1247999999999986543212222         233


Q ss_pred             HHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158          172 ILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG  213 (225)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~  213 (225)
                      +.+..+..++      ..|+..+.+++++++.|.+.+.+...
T Consensus       156 ~a~~~~~~~~------e~Sa~~~~~v~~lf~~l~~~i~~~~~  191 (195)
T 3cbq_A          156 LAGTLSCKHI------ETSAALHHNTRELFEGAVRQIRLRRG  191 (195)
T ss_dssp             HHHHTTCEEE------EEBTTTTBSHHHHHHHHHHHHHTTC-
T ss_pred             HHHHhCCEEE------EEcCCCCCCHHHHHHHHHHHHHHhcC
Confidence            4444444332      34556678999999999888766543

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.73  E-value=6.4e-17  Score=122.01  Aligned_cols=163  Identities=10%  Similarity=0.032  Sum_probs=97.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .+..+|+++|.+|+|||||+|++.+......     ..|.......+.+ ++..+.+|||||.....           ..
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~~   83 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATL-----QPTWHPTSEELAI-GNIKFTTFDLGGHIQAR-----------RL   83 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCCCC-----CCCCSCEEEEEEE-TTEEEEEEECCCSGGGT-----------TS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCcc-----ccCCCCCeEEEEE-CCEEEEEEECCCCHHHH-----------HH
Confidence            5568999999999999999999997664221     2233334455666 67899999999986432           12


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchH---HH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPL---KE  171 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~---~~  171 (225)
                      +..+...+|++++|+|+.++.+-..  ...++.+....  ....|+++|.||+|+....  ..++..+. .....   +.
T Consensus        84 ~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~-~~~~~~~~~~  158 (190)
T 1m2o_B           84 WKDYFPEVNGIVFLVDAADPERFDE--ARVELDALFNIAELKDVPFVILGNKIDAPNAV--SEAELRSA-LGLLNTTGSQ  158 (190)
T ss_dssp             GGGGCTTCCEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHH-TTCSSCCC--
T ss_pred             HHHHHhcCCEEEEEEECCChHHHHH--HHHHHHHHHcchhhcCCCEEEEEECCCCcCCC--CHHHHHHH-hCCccccccc
Confidence            2345678899999999975433222  22333333321  1347999999999986532  22222111 00000   00


Q ss_pred             HHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158          172 ILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNS  206 (225)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~  206 (225)
                      .+  .....+   ...+.|+.++.+++++++.|.+
T Consensus       159 ~~--~~~~~~---~~~~~Sa~~g~gi~~l~~~l~~  188 (190)
T 1m2o_B          159 RI--EGQRPV---EVFMCSVVMRNGYLEAFQWLSQ  188 (190)
T ss_dssp             -C--CSSCCE---EEEECBTTTTBSHHHHHHHHHT
T ss_pred             cc--cccceE---EEEEeECCcCCCHHHHHHHHHh
Confidence            00  011111   1234567778999999998854

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.73  E-value=1.4e-16  Score=119.78  Aligned_cols=164  Identities=21%  Similarity=0.123  Sum_probs=96.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEI   93 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~   93 (225)
                      ....++|+|+|.+|+|||||+|++++......   ...++.........+ ++  ..+.||||||...+...        
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~--------   85 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISE---YDPNLEDTYSSEETV-DHQPVHLRVMDTADLDTPRNC--------   85 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSC---CCTTCCEEEEEEEEE-TTEEEEEEEEECCC---CCCT--------
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCcc---cCCCccceeeEEEEE-CCEEEEEEEEECCCCCcchhH--------
Confidence            45679999999999999999999997763211   122222222223333 33  36889999998754321        


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGK-KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE  171 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~  171 (225)
                      .    .++..+|++++|+|++++.+-.. ..++..+...... ....|+++|.||+|+........++         ..+
T Consensus        86 ~----~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~---------~~~  152 (187)
T 3c5c_A           86 E----RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAE---------GVA  152 (187)
T ss_dssp             H----HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHH---------HHH
T ss_pred             H----HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHH---------HHH
Confidence            1    13346799999999974322222 2233334333211 1247999999999975432111111         344


Q ss_pred             HHHHcCCcEEEeeCCCcccc-ccHHHHHHHHHHHHHHHHH
Q 036158          172 ILQLCDNRCVLFDNKTKDTA-KRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~i~~~~~~  210 (225)
                      +.+..+..++      ..|+ .++.+++++++.|.+.+.+
T Consensus       153 ~~~~~~~~~~------e~Sa~~~g~gv~~lf~~l~~~i~~  186 (187)
T 3c5c_A          153 LAGRFGCLFF------EVSACLDFEHVQHVFHEAVREARR  186 (187)
T ss_dssp             HHHHHTCEEE------ECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred             HHHHcCCcEE------EEeecCccccHHHHHHHHHHHHhh
Confidence            4455554333      3455 5679999999999876643

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.73  E-value=1e-17  Score=144.63  Aligned_cols=119  Identities=13%  Similarity=0.175  Sum_probs=85.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccc--------------------cCCCCCceeEEEEEEEEeeCCceEEEEeC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKS--------------------KAGSSGVTKTCEMQRTMLKDGQVVNVIDT   76 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~--------------------~~~~~~~t~~~~~~~~~~~~~~~~~liDt   76 (225)
                      ....+|+|+|++|+|||||+|+|++......                    .....+.|.......+.+ .+..++||||
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~liDT   89 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-KDYLINLLDT   89 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-TTEEEEEECC
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-CCEEEEEEEC
Confidence            3568999999999999999999972211100                    000123454555566677 7889999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158           77 PGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED  152 (225)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~  152 (225)
                      ||+.++..       .    +..+...+|++|+|+|+.+.....+...+..+...     ..|+++|+||+|....
T Consensus        90 PG~~df~~-------~----~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~-----~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           90 PGHADFTE-------D----TYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR-----HTPIMTFINKMDRDTR  149 (528)
T ss_dssp             CCSTTCCH-------H----HHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT-----TCCEEEEEECTTSCCS
T ss_pred             CCchhHHH-------H----HHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCccc
Confidence            99987631       1    22345577999999999878888777777666542     3799999999998644

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.73  E-value=7.5e-17  Score=121.07  Aligned_cols=164  Identities=18%  Similarity=0.116  Sum_probs=99.7

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHH
Q 036158           14 SPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSK   91 (225)
Q Consensus        14 ~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~   91 (225)
                      ....+.++|+|+|.+|+|||||+|++++...... .   ..|.......+.+ ++.  .+.+|||||...+.        
T Consensus        15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~-~---~~t~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~--------   81 (184)
T 3ihw_A           15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQE-E---SPEGGRFKKEIVV-DGQSYLLLIRDEGGPPELQ--------   81 (184)
T ss_dssp             -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCC-C---CTTCEEEEEEEEE-TTEEEEEEEEECSSSCCHH--------
T ss_pred             CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCC-c---CCCcceEEEEEEE-CCEEEEEEEEECCCChhhh--------
Confidence            3456789999999999999999999997664322 1   1122222344555 553  67789999976431        


Q ss_pred             HHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHH
Q 036158           92 EIVKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK  170 (225)
Q Consensus        92 ~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~  170 (225)
                              ++..+|++++|+|++++.+... ..++..+.... .....|+++|.||+|+.......+.       .+...
T Consensus        82 --------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~v~-------~~~~~  145 (184)
T 3ihw_A           82 --------FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFR-NASEVPMVLVGTQDAISAANPRVID-------DSRAR  145 (184)
T ss_dssp             --------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTS-CGGGSCEEEEEECTTCBTTBCCCSC-------HHHHH
T ss_pred             --------eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECcccccccccccC-------HHHHH
Confidence                    1224699999999985432222 22333333221 1134799999999997532111111       01134


Q ss_pred             HHHHHcC-CcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          171 EILQLCD-NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       171 ~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                      ++....+ ..++      ..|+.++.+++++++.+.+.+.+..
T Consensus       146 ~~~~~~~~~~~~------e~Sa~~~~gv~~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          146 KLSTDLKRCTYY------ETCATYGLNVERVFQDVAQKVVALR  182 (184)
T ss_dssp             HHHHHTTTCEEE------EEBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             HHHHHcCCCeEE------EecCCCCCCHHHHHHHHHHHHHHHh
Confidence            4555554 3333      3455667899999999988776553

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.73  E-value=1.9e-17  Score=124.30  Aligned_cols=172  Identities=17%  Similarity=0.158  Sum_probs=98.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH---
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC---   96 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~---   96 (225)
                      ++|+++|.+|+|||||+|++++.... . ...++.|.....  +.+ .  .+.+|||||+.+.........+.+...   
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~-~~~~~~t~~~~~--~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   74 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVR-R-GKRPGVTRKIIE--IEW-K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVH   74 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCS-S-SSSTTCTTSCEE--EEE-T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCc-c-CCCCCccceeEE--Eec-C--CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence            68999999999999999999987632 2 223344444433  233 2  689999999875543332222223222   


Q ss_pred             -HhhcCCCccEEEEEEeCCCCCCHHHHHHH---------HHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCC
Q 036158           97 -IGMTKDGIHAVLVVFSVRNRFSEEEGAAI---------HILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECP  166 (225)
Q Consensus        97 -~~~~~~~~~~ii~v~~~~~~~~~~~~~~~---------~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~  166 (225)
                       +......++++++|+|.. .+......+.         +.+....  ....|+++|+||+|.....    .+.      
T Consensus        75 ~~~~~~~~~~~v~~v~d~~-s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~----~~~------  141 (190)
T 2cxx_A           75 FIEDNAKNIDVAVLVVDGK-AAPEIIKRWEKRGEIPIDVEFYQFLR--ELDIPTIVAVNKLDKIKNV----QEV------  141 (190)
T ss_dssp             HHHHHGGGCCEEEEEEETT-HHHHHHHHHHHTTCCCHHHHHHHHHH--HTTCCEEEEEECGGGCSCH----HHH------
T ss_pred             HHHhhhccCCEEEEEEcch-hhhhHHHhhhccCccHHHHHHHHHHH--hcCCceEEEeehHhccCcH----HHH------
Confidence             222244567888888875 2211101111         1111111  1247999999999976542    111      


Q ss_pred             chHHHHHHHcCCcEEEe-eCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158          167 KPLKEILQLCDNRCVLF-DNKTKDTAKRTEQVGKLLSLVNSVIVQNGG  213 (225)
Q Consensus       167 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~  213 (225)
                        ..++.+..+..+..+ ......|+.++.+++++++.|.+.+.+..+
T Consensus       142 --~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  187 (190)
T 2cxx_A          142 --INFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG  187 (190)
T ss_dssp             --HHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred             --HHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence              333444444321000 011345667789999999999988877643

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.72  E-value=4.1e-16  Score=128.90  Aligned_cols=170  Identities=15%  Similarity=0.117  Sum_probs=110.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcH-HHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSE-FVSKEIVK   95 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~-~~~~~~~~   95 (225)
                      ...++|+++|.+|+|||||+|+|++.... . ...+..|.......+.. .+..+.+|||||+.+...... ....   .
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~-~-~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~---~  238 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPE-I-ASYPFTTRGINVGQFED-GYFRYQIIDTPGLLDRPISERNEIEK---Q  238 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCE-E-ECCTTCSSCEEEEEEEE-TTEEEEEEECTTTSSSCSTTSCHHHH---H
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCc-c-CCCCCeeeceeEEEEEe-cCceEEEEeCCCccccchhhhhHHHH---H
Confidence            45689999999999999999999987732 2 22345566666666665 677899999999976432111 1111   1


Q ss_pred             HHhhcCCCccEEEEEEeCCCCC--CHH-HHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRF--SEE-EGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI  172 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~--~~~-~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (225)
                      .+......+|++++|+|+.+..  +.. ...++..+...++   ..|+++|+||+|.....  .+++         ..+.
T Consensus       239 ~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~~~~--~~~~---------~~~~  304 (357)
T 2e87_A          239 AILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVADEE--NIKR---------LEKF  304 (357)
T ss_dssp             HHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTCCHH--HHHH---------HHHH
T ss_pred             HHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccCChH--HHHH---------HHHH
Confidence            2222334679999999986433  333 3445566655443   38999999999976432  2221         2333


Q ss_pred             HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          173 LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                      +...+.++      ...|+.++.++++|++.|.+.+....
T Consensus       305 ~~~~~~~~------~~iSA~~g~gi~~l~~~i~~~l~~~~  338 (357)
T 2e87_A          305 VKEKGLNP------IKISALKGTGIDLVKEEIIKTLRPLA  338 (357)
T ss_dssp             HHHTTCCC------EECBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCe------EEEeCCCCcCHHHHHHHHHHHHHHHH
Confidence            44444333      34566677999999999998886643

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.72  E-value=1.3e-16  Score=129.17  Aligned_cols=126  Identities=18%  Similarity=0.153  Sum_probs=84.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH-HHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEI-VKC   96 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~-~~~   96 (225)
                      ..++|+++|.+|+|||||+|++++...... ....++|.........+.++..+.+|||||....       .+.+ ...
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~-~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~   73 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFD-TRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF-------MENYFTKQ   73 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGG-GGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH-------HHHHHTTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCcc-ccCcCCccceEEEEEEeCCceEEEEEECCCcHHH-------hhhhhhhH
Confidence            358999999999999999999988742222 1245567666666666545679999999996422       1111 123


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEG-AAIHILESLFGKKISDYMIVVFTGGDELE  151 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~vv~~k~D~~~  151 (225)
                      ...+...+|++|+|+|+.++.+..+. .+.+++.+........|+++|+||+|+..
T Consensus        74 ~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~  129 (307)
T 3r7w_A           74 KDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ  129 (307)
T ss_dssp             HHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred             HHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence            33445688999999999855443433 23444544432223489999999999865

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.72  E-value=1.3e-16  Score=133.71  Aligned_cols=167  Identities=19%  Similarity=0.213  Sum_probs=109.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc------cc--------ccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA------FK--------SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS   83 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~------~~--------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~   83 (225)
                      +.++|+++|++|+|||||+++|++...      +.        ......+.|.......+.. .+..+.||||||+.+  
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~~~iiDtpG~~~--   78 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHAD--   78 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHHH--
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEecc-CCeEEEEEECCChHH--
Confidence            568999999999999999999986421      00        0001234566665555555 678999999999642  


Q ss_pred             CCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccccc-EEEEEecCCCCCCCcccHHHHhh
Q 036158           84 ADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDY-MIVVFTGGDELEDNDETLEDYLG  162 (225)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~vv~~k~D~~~~~~~~~~~~~~  162 (225)
                               +...+......+|++|+|+|+.+.......+.+..+...     ..| +++++||+|+... ...++....
T Consensus        79 ---------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~-----~vp~iivviNK~Dl~~~-~~~~~~~~~  143 (397)
T 1d2e_A           79 ---------YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI-----GVEHVVVYVNKADAVQD-SEMVELVEL  143 (397)
T ss_dssp             ---------HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCCEEEEEECGGGCSC-HHHHHHHHH
T ss_pred             ---------HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCeEEEEEECcccCCC-HHHHHHHHH
Confidence                     333444566789999999999877777777777655542     245 7899999998642 122333333


Q ss_pred             hcCCchHHHHHHHcCCc---EEEeeCCCccccccHH---------H-HHHHHHHHHHHHHHc
Q 036158          163 RECPKPLKEILQLCDNR---CVLFDNKTKDTAKRTE---------Q-VGKLLSLVNSVIVQN  211 (225)
Q Consensus       163 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---------~-v~~l~~~i~~~~~~~  211 (225)
                      +     ++++++.++..   +..    .+.||.++.         + +.+|++.|.+.++..
T Consensus       144 ~-----~~~~l~~~~~~~~~~~~----i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p  196 (397)
T 1d2e_A          144 E-----IRELLTEFGYKGEETPI----IVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP  196 (397)
T ss_dssp             H-----HHHHHHHTTSCTTTSCE----EECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCC
T ss_pred             H-----HHHHHHHcCCCcccCcE----EEeehhhcccccCCCccCCcHHHHHHHHHHhCCCC
Confidence            3     56677666531   111    223444433         4 899999998877653

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.72  E-value=7.6e-16  Score=118.15  Aligned_cols=167  Identities=18%  Similarity=0.130  Sum_probs=97.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ...++|+|+|.+|+|||||+|++.+........ .+.++.......+.+ ++.  .+.+|||+|...      .  .  .
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~-~~~~~~l~~~Dt~g~~~------~--~--~  102 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMV-DGESATIILLDMWENKG------E--N--E  102 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEE-TTEEEEEEEECCTTTTH------H--H--H
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEE-CCeeeEEEEeecCCCcc------h--h--h
Confidence            456899999999999999999999754311111 112222222333445 444  568899999541      0  1  1


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEEG-AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                      .....++..+|++|+|++++++-+-... .++..+.+.. .....|+++|.||+|+........++         .+.+.
T Consensus       103 ~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~-~~~~~piilVgNK~DL~~~r~v~~~e---------~~~~a  172 (211)
T 2g3y_A          103 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR-QTEDIPIILVGNKSDLVRCREVSVSE---------GRACA  172 (211)
T ss_dssp             HHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSG-GGTTSCEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred             hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEChHHhcCceEeHHH---------HHHHH
Confidence            1223466788999999999743222221 1222232211 11247999999999986432111111         12222


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ...+..+      ...||+++.+++++++.|.+.+...
T Consensus       173 ~~~~~~~------~e~SAk~g~~v~elf~~l~~~i~~~  204 (211)
T 2g3y_A          173 VVFDCKF------IETSAAVQHNVKELFEGIVRQVRLR  204 (211)
T ss_dssp             HHHTCEE------EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HHcCCEE------EEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            3334322      2356777899999999998877554

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.72  E-value=1.3e-16  Score=121.90  Aligned_cols=169  Identities=14%  Similarity=0.080  Sum_probs=99.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ...++|+|+|.+|+|||||+|+|++......   ...+........+.+. ....+.||||||...+.           .
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~   91 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPEN---YVPTVFENYTASFEIDTQRIELSLWDTSGSPYYD-----------N   91 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSS---CCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGT-----------T
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCC---cCCccceeEEEEEEECCEEEEEEEEeCCCcHhhh-----------H
Confidence            4578999999999999999999998664211   1111111112233331 12479999999975432           1


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhh---cC-CchH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR---EC-PKPL  169 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~---~~-~~~~  169 (225)
                      ....+...+|++|+|+|+.++.+...  ..++..+.+...   ..|+++|.||+|+.... ....++...   .. .+..
T Consensus        92 ~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~  167 (205)
T 1gwn_A           92 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQG  167 (205)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHHH
T ss_pred             HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEechhhccch-hhhhhhcccccCCCCHHHH
Confidence            22345678899999999974432222  233444444322   37999999999986432 111111111   00 1113


Q ss_pred             HHHHHHcCC-cEEEeeCCCccccc-cHHHHHHHHHHHHHHHH
Q 036158          170 KEILQLCDN-RCVLFDNKTKDTAK-RTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       170 ~~~~~~~~~-~~~~~~~~~~~~~~-~~~~v~~l~~~i~~~~~  209 (225)
                      .++.+..+. .++      ..|++ ++.+++++++.+.+.+-
T Consensus       168 ~~~~~~~~~~~~~------e~SAk~~~~gv~~lf~~l~~~~l  203 (205)
T 1gwn_A          168 ANMAKQIGAATYI------ECSALQSENSVRDIFHVATLACV  203 (205)
T ss_dssp             HHHHHHHTCSEEE------ECCTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCEEE------EeeeccCCcCHHHHHHHHHHHHh
Confidence            444444442 222      34555 57899999999987654

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.72  E-value=1.5e-16  Score=130.12  Aligned_cols=160  Identities=13%  Similarity=0.089  Sum_probs=99.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      +.++|+|+|.+|+|||||+|+|++......     ..|.......+.. .+..+.||||||...+...           .
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-----~pT~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~-----------~  226 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDKIRPL-----------W  226 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECC-----CCS-----------H
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCc-----ccccceEEEEEec-CcEEEEEEECCCCHhHHHH-----------H
Confidence            457999999999999999999998774222     1355556666676 7889999999996544321           2


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      ..++..+|++|+|+|++++.+...  ...++.......  ...|+++|+||+|+....  ..++....         +..
T Consensus       227 ~~~~~~ad~vilV~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~---------~~~  293 (329)
T 3o47_A          227 RHYFQNTQGLIFVVDSNDRERVNE--AREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDK---------LGL  293 (329)
T ss_dssp             HHHHTTEEEEEEEEETTCSSSHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHH---------HTC
T ss_pred             HHHhccCCEEEEEEECCchHHHHH--HHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHH---------hch
Confidence            234457899999999975433322  222333322221  247999999999987553  22222211         111


Q ss_pred             c--C-CcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          176 C--D-NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       176 ~--~-~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      .  . ..+.+    ...|+.++.++++|++.|.+.+.+.
T Consensus       294 ~~~~~~~~~~----~~vSAk~g~gi~el~~~l~~~l~~~  328 (329)
T 3o47_A          294 HSLRHRNWYI----QATCATSGDGLYEGLDWLSNQLRNQ  328 (329)
T ss_dssp             TTCCSSCEEE----EECBTTTTBTHHHHHHHHHHHHTC-
T ss_pred             hhhhcCCCEE----EEEECCCCcCHHHHHHHHHHHHHhc
Confidence            0  1 11222    2346677899999999998877543

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.72  E-value=5.7e-17  Score=137.30  Aligned_cols=160  Identities=13%  Similarity=0.147  Sum_probs=101.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCcccccc-------------------------------CCCCCceeEEEEEEEE
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSK-------------------------------AGSSGVTKTCEMQRTM   64 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~-------------------------------~~~~~~t~~~~~~~~~   64 (225)
                      ..+.++|+++|++|+|||||+|+|++.......                               ....+.|.......+.
T Consensus        21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~  100 (434)
T 1zun_B           21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS  100 (434)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence            355689999999999999999999865311000                               0012445555555566


Q ss_pred             eeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEE
Q 036158           65 LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVF  144 (225)
Q Consensus        65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~  144 (225)
                      . .+..+.||||||+.++       ...+.    .....+|++|+|+|+.++......+.+..+... +   .+++++|+
T Consensus       101 ~-~~~~~~iiDtpGh~~f-------~~~~~----~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~-~---~~~iIvvi  164 (434)
T 1zun_B          101 T-AKRKFIIADTPGHEQY-------TRNMA----TGASTCDLAIILVDARYGVQTQTRRHSYIASLL-G---IKHIVVAI  164 (434)
T ss_dssp             C-SSEEEEEEECCCSGGG-------HHHHH----HHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT-T---CCEEEEEE
T ss_pred             c-CCceEEEEECCChHHH-------HHHHH----HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-C---CCeEEEEE
Confidence            6 6788999999997643       12222    234578999999999877777776666655442 2   14789999


Q ss_pred             ecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC--CcEEEeeCCCccccccHHHHHH
Q 036158          145 TGGDELEDNDETLEDYLGRECPKPLKEILQLCD--NRCVLFDNKTKDTAKRTEQVGK  199 (225)
Q Consensus       145 ~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~  199 (225)
                      ||+|+....+..++....+     ++++++.++  .....+   .+.|+.++.++++
T Consensus       165 NK~Dl~~~~~~~~~~i~~~-----~~~~~~~~g~~~~~~~~---i~vSA~~g~gi~~  213 (434)
T 1zun_B          165 NKMDLNGFDERVFESIKAD-----YLKFAEGIAFKPTTMAF---VPMSALKGDNVVN  213 (434)
T ss_dssp             ECTTTTTSCHHHHHHHHHH-----HHHHHHTTTCCCSEEEE---EECCTTTCTTTSS
T ss_pred             EcCcCCcccHHHHHHHHHH-----HHHHHHHhCCCccCceE---EEEeccCCCCccc
Confidence            9999875432233444444     666777766  221211   2334555667665

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.72  E-value=2.9e-17  Score=137.99  Aligned_cols=170  Identities=15%  Similarity=0.177  Sum_probs=108.8

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhCCcc-------ccc--------cCCCCCceeEEEEEEEEeeCCceEEEEeCCCC
Q 036158           15 PSNGERNLVLVGRTGNGKSATANSILGKRA-------FKS--------KAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL   79 (225)
Q Consensus        15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~-------~~~--------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (225)
                      ...+.++|+++|++|+|||||+|+|++...       +..        .....+.|.......+.. .+..+.||||||+
T Consensus         7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~~~iiDtpG~   85 (405)
T 2c78_A            7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGH   85 (405)
T ss_dssp             --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCS
T ss_pred             CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc-CCeEEEEEECCCh
Confidence            345679999999999999999999987310       000        000234455555555555 6789999999998


Q ss_pred             CCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccccc-EEEEEecCCCCCCCcccHH
Q 036158           80 FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDY-MIVVFTGGDELEDNDETLE  158 (225)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~vv~~k~D~~~~~~~~~~  158 (225)
                      .++       ...    +......+|++|+|+|+.++......+.+..+...     ..| +++++||+|+... ...++
T Consensus        86 ~~f-------~~~----~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~-----~ip~iivviNK~Dl~~~-~~~~~  148 (405)
T 2c78_A           86 ADY-------IKN----MITGAAQMDGAILVVSAADGPMPQTREHILLARQV-----GVPYIVVFMNKVDMVDD-PELLD  148 (405)
T ss_dssp             GGG-------HHH----HHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT-----TCCCEEEEEECGGGCCC-HHHHH
T ss_pred             HHH-------HHH----HHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc-----CCCEEEEEEECccccCc-HHHHH
Confidence            753       122    22334577999999999877777776666665542     245 8899999998642 12233


Q ss_pred             HHhhhcCCchHHHHHHHcCC---cEEEeeCCCccccccHHH------------------HHHHHHHHHHHHHHc
Q 036158          159 DYLGRECPKPLKEILQLCDN---RCVLFDNKTKDTAKRTEQ------------------VGKLLSLVNSVIVQN  211 (225)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~------------------v~~l~~~i~~~~~~~  211 (225)
                      ....+     ++++++.++.   ...    ..+.|+.++.+                  +.+|++.|.++++..
T Consensus       149 ~~~~~-----~~~~l~~~~~~~~~~~----~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p  213 (405)
T 2c78_A          149 LVEME-----VRDLLNQYEFPGDEVP----VIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTP  213 (405)
T ss_dssp             HHHHH-----HHHHHHHTTSCTTTSC----EEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHH-----HHHHHHHhcccccCCC----EEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCC
Confidence            33333     5666666552   111    12345555555                  888999988877643

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.71  E-value=3.3e-16  Score=131.67  Aligned_cols=170  Identities=17%  Similarity=0.245  Sum_probs=101.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCcccc-ccCCCCCceeEEEEEEEEee--------------C--------CceEE
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFK-SKAGSSGVTKTCEMQRTMLK--------------D--------GQVVN   72 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~--------------~--------~~~~~   72 (225)
                      ..+.++|+++|+.++|||||+++|++..... .....++.|....+....+.              +        ...+.
T Consensus         5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   84 (408)
T 1s0u_A            5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS   84 (408)
T ss_dssp             CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred             cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence            3567999999999999999999999764211 11122444554443332221              0        15799


Q ss_pred             EEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158           73 VIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRF-SEEEGAAIHILESLFGKKISDYMIVVFTGGDELE  151 (225)
Q Consensus        73 liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~  151 (225)
                      ||||||+.           .+...+......+|++|+|+|++++. .....+.+..+.. ++.   +|+++++||+|+..
T Consensus        85 iiDtPGh~-----------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~---~~iivv~NK~Dl~~  149 (408)
T 1s0u_A           85 FVDSPGHE-----------TLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGI---DKIIIVQNKIDLVD  149 (408)
T ss_dssp             EEECSSHH-----------HHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTC---CCEEEEEECTTSSC
T ss_pred             EEECCCHH-----------HHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCC---CeEEEEEEccCCCC
Confidence            99999953           23344445566889999999998665 5556666655543 222   58999999999876


Q ss_pred             CCcccHHHHhhhcCCchHHHHHHHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          152 DNDETLEDYLGRECPKPLKEILQLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ..  ...+..++     +++++..... .+    ...+.|+.++.++++|++.|.+.+...
T Consensus       150 ~~--~~~~~~~~-----i~~~l~~~~~~~~----~~i~vSA~~g~gi~~L~~~l~~~i~~~  199 (408)
T 1s0u_A          150 EK--QAEENYEQ-----IKEFVKGTIAENA----PIIPISAHHEANIDVLLKAIQDFIPTP  199 (408)
T ss_dssp             TT--TTTTHHHH-----HHHHHTTSTTTTC----CEEEC------CHHHHHHHHHHHSCCC
T ss_pred             HH--HHHHHHHH-----HHHHHhhcCCCCC----eEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence            53  21122222     3444443211 11    123456777899999999998876643

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.71  E-value=7.4e-17  Score=138.33  Aligned_cols=141  Identities=16%  Similarity=0.187  Sum_probs=93.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcccc-----------------------------ccCCCCCceeEEEEEEEEeeC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFK-----------------------------SKAGSSGVTKTCEMQRTMLKD   67 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~~   67 (225)
                      .+.++|+++|++|+|||||+|+|++.....                             ......+.|.......+.. .
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~  109 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-H  109 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-S
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-C
Confidence            456899999999999999999997552100                             0111246677777777777 7


Q ss_pred             CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccccE
Q 036158           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNR-------FSEEEGAAIHILESLFGKKISDYM  140 (225)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~  140 (225)
                      +..+.||||||+.++           ...+......+|++|+|+|++++       +.....+.+..+.. .+   .+|+
T Consensus       110 ~~~~~iiDTPG~~~f-----------~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~---~~~i  174 (483)
T 3p26_A          110 RANFTIVDAPGHRDF-----------VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LG---IHNL  174 (483)
T ss_dssp             SCEEEEECCCCCGGG-----------HHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TT---CCCE
T ss_pred             CceEEEEECCCcHHH-----------HHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cC---CCcE
Confidence            889999999998643           22222345578999999999754       33445555544443 22   2579


Q ss_pred             EEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158          141 IVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN  178 (225)
Q Consensus       141 ~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (225)
                      ++|+||+|+....+...++...+     +.+++...+.
T Consensus       175 IvviNK~Dl~~~~~~~~~~i~~~-----~~~~l~~~g~  207 (483)
T 3p26_A          175 IIAMNKMDNVDWSQQRFEEIKSK-----LLPYLVDIGF  207 (483)
T ss_dssp             EEEEECGGGGTTCHHHHHHHHHH-----HHHHHHHHTC
T ss_pred             EEEEECcCcccchHHHHHHHHHH-----HHHHHHHcCC
Confidence            99999999876543445555444     6666666654

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.71  E-value=8.1e-17  Score=133.44  Aligned_cols=152  Identities=15%  Similarity=0.211  Sum_probs=103.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT  100 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (225)
                      +|+++|++++|||||+|+|+          ..+.|.......+.+ ++..+.||||||+.++       ...+..    .
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~~-~~~~i~iiDtPGh~~f-------~~~~~~----~   80 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNNDK-EGRNMVFVDAHSYPKT-------LKSLIT----A   80 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEECS-SSSEEEEEECTTTTTC-------HHHHHH----H
T ss_pred             EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEec-CCeEEEEEECCChHHH-------HHHHHH----H
Confidence            99999999999999999998          234555666666777 6788999999999765       122222    2


Q ss_pred             CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccE-EEEEe-cCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158          101 KDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYM-IVVFT-GGDELEDNDETLEDYLGRECPKPLKEILQLCDN  178 (225)
Q Consensus       101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~vv~~-k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (225)
                      ...+|++|+|+| +........+.+..+...     ..|. ++++| |+|+ ..  ...++...+     ++++++..+.
T Consensus        81 ~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~-----~i~~~ivvvNNK~Dl-~~--~~~~~~~~~-----i~~~l~~~~~  146 (370)
T 2elf_A           81 LNISDIAVLCIP-PQGLDAHTGECIIALDLL-----GFKHGIIALTRSDST-HM--HAIDELKAK-----LKVITSGTVL  146 (370)
T ss_dssp             HHTCSEEEEEEC-TTCCCHHHHHHHHHHHHT-----TCCEEEEEECCGGGS-CH--HHHHHHHHH-----HHHHTTTSTT
T ss_pred             HHHCCEEEEEEc-CCCCcHHHHHHHHHHHHc-----CCCeEEEEEEeccCC-CH--HHHHHHHHH-----HHHHHHhcCC
Confidence            246799999999 767776676666665542     2455 88999 9998 32  233333333     4555554432


Q ss_pred             c-EEEeeCCCcccccc---HHHHHHHHHHHHHHHHH
Q 036158          179 R-CVLFDNKTKDTAKR---TEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       179 ~-~~~~~~~~~~~~~~---~~~v~~l~~~i~~~~~~  210 (225)
                      . +..+..  ..||.+   +.++++|++.|.+.+..
T Consensus       147 ~~~~ii~~--~~SA~~~~~g~gi~~L~~~l~~~~~~  180 (370)
T 2elf_A          147 QDWECISL--NTNKSAKNPFEGVDELKARINEVAEK  180 (370)
T ss_dssp             TTCEEEEC--CCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred             CceEEEec--ccccccCcCCCCHHHHHHHHHhhccc
Confidence            1 122210  045666   79999999999887764

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.71  E-value=9e-17  Score=122.04  Aligned_cols=157  Identities=13%  Similarity=0.126  Sum_probs=93.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .+..+|+++|++|+|||||+|++.+...... .    .|.......+.+ ++..+.+|||||......           .
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~-~----~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~-----------~   85 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-V----PTLHPTSEELTI-AGMTFTTFDLGGHIQARR-----------V   85 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-----------CCCCCSCEEEEE-TTEEEEEEEECC----CC-----------G
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCCcc-C----CCCCceeEEEEE-CCEEEEEEECCCcHhhHH-----------H
Confidence            4568999999999999999999998764221 1    122222345556 678999999999764421           2


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      +..++..+|++++|+|+.++-+-.  ....++.+....  ....|+++|.||+|+....  ..++.         ++.+.
T Consensus        86 ~~~~~~~~d~~i~v~D~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~---------~~~~~  152 (198)
T 1f6b_A           86 WKNYLPAINGIVFLVDCADHERLL--ESKEELDSLMTDETIANVPILILGNKIDRPEAI--SEERL---------REMFG  152 (198)
T ss_dssp             GGGGGGGCSEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCC--CHHHH---------HHHHT
T ss_pred             HHHHHhcCCEEEEEEECCCHHHHH--HHHHHHHHHHhCcccCCCcEEEEEECCCccccC--CHHHH---------HHHhC
Confidence            234556789999999997443222  223344443322  1347999999999986522  22221         22221


Q ss_pred             HcC--------------CcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158          175 LCD--------------NRCVLFDNKTKDTAKRTEQVGKLLSLVNS  206 (225)
Q Consensus       175 ~~~--------------~~~~~~~~~~~~~~~~~~~v~~l~~~i~~  206 (225)
                      ...              .+..   .....||.++.+++++++.|.+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~---~~~~~SA~~g~gv~~l~~~l~~  195 (198)
T 1f6b_A          153 LYGQTTGKGSVSLKELNARPL---EVFMCSVLKRQGYGEGFRWMAQ  195 (198)
T ss_dssp             CTTTCCCSSCCCTTTCCSCCE---EEEECBTTTTBSHHHHHHHHHT
T ss_pred             cccccccccccccccccCceE---EEEEEECCCCCCHHHHHHHHHH
Confidence            110              1111   1234577788999999999864

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.71  E-value=1.4e-16  Score=121.88  Aligned_cols=170  Identities=16%  Similarity=0.076  Sum_probs=101.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ...++|+++|.+|+|||||+|++++......   ..+++.......+.+ ++  ..+.||||||...+..          
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~----------   72 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTD---YIPTVFDNFSANVAV-DGQIVNLGLWDTAGQEDYSR----------   72 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSS---CCCSSCCCEEEEEEC-SSCEEEEEEECCCCCCCCCC----------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCcc---CCCccceeEEEEEEE-CCEEEEEEEEECCCcHHHHH----------
Confidence            4569999999999999999999997653211   111222222223334 33  3899999999876532          


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHh-hhcCCchHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL-GRECPKPLKE  171 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~-~~~~~~~~~~  171 (225)
                       .+..++..+|++|+|+|+.++.+....  .++..+....+   ..|+++|+||+|+....  ...... .........+
T Consensus        73 -~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~--~~~~~~~~~v~~~~~~~  146 (212)
T 2j0v_A           73 -LRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLRDDK--GYLADHTNVITSTQGEE  146 (212)
T ss_dssp             ---CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHTCH--HHHHTCSSCCCHHHHHH
T ss_pred             -HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeCHHhhhCc--cccccccCCCCHHHHHH
Confidence             122356788999999999744322221  34444444322   47999999999976542  110000 0000111344


Q ss_pred             HHHHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          172 ILQLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       172 ~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                      +....+. .++      ..|+.++.+++++++.|.+.+.+..
T Consensus       147 ~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~~~~  182 (212)
T 2j0v_A          147 LRKQIGAAAYI------ECSSKTQQNVKAVFDTAIKVVLQPP  182 (212)
T ss_dssp             HHHHHTCSEEE------ECCTTTCTTHHHHHHHHHHHHHCC-
T ss_pred             HHHHcCCceEE------EccCCCCCCHHHHHHHHHHHHhhhh
Confidence            4444453 332      3455667899999999988876543

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.71  E-value=1e-16  Score=119.19  Aligned_cols=158  Identities=18%  Similarity=0.096  Sum_probs=95.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      .+.++|+++|.+|+|||||+|++++..... ..  +. +.......+.+ ++  ..+.+|||||...     .       
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~--~t-~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----~-------   67 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LE--KT-ESEQYKKEMLV-DGQTHLVLIREEAGAPD-----A-------   67 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CS--SC-SSSEEEEEEEE-TTEEEEEEEEECSSSCC-----H-------
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cC--CC-cceeEEEEEEE-CCEEEEEEEEECCCCch-----h-------
Confidence            457999999999999999999999876432 11  11 11122233444 44  3688999999763     0       


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcc-cccccEEEEEecCCCCCCC--cccHHHHhhhcCCchHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEEG-AAIHILESLFGK-KISDYMIVVFTGGDELEDN--DETLEDYLGRECPKPLK  170 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~-~~~~~l~~~~~~-~~~~~~~vv~~k~D~~~~~--~~~~~~~~~~~~~~~~~  170 (225)
                          .++..+|++|+|+|++++.+.... .+++++...... ....|+++|.||+|+....  ....++         ..
T Consensus        68 ----~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~---------~~  134 (178)
T 2iwr_A           68 ----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDAR---------AR  134 (178)
T ss_dssp             ----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHH---------HH
T ss_pred             ----HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHH---------HH
Confidence                122346999999999754333222 233345554321 1247999999999974221  111111         23


Q ss_pred             HHHHHc-CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          171 EILQLC-DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       171 ~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      ++.... +..++      ..|+.++.+++++++.+.+.+.+
T Consensus       135 ~~~~~~~~~~~~------~~Sa~~~~~i~~lf~~l~~~~~~  169 (178)
T 2iwr_A          135 ALXADMKRCSYY------ETXATYGLNVDRVFQEVAQKVVT  169 (178)
T ss_dssp             HHHHHHSSEEEE------EEBTTTTBTHHHHHHHHHHHHHH
T ss_pred             HHHHhhcCCeEE------EEeccccCCHHHHHHHHHHHHHH
Confidence            333333 22222      34556678999999998876654

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.71  E-value=1.4e-16  Score=133.92  Aligned_cols=170  Identities=14%  Similarity=0.212  Sum_probs=107.3

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCcccc-ccCCCCCceeEEEEEEEEeeC----------------------CceEE
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFK-SKAGSSGVTKTCEMQRTMLKD----------------------GQVVN   72 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~----------------------~~~~~   72 (225)
                      ..+.++|+++|+.++|||||+++|++..... .....++.|....+....+..                      ...+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            4567899999999999999999999754211 111224445554443333210                      16799


Q ss_pred             EEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158           73 VIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRF-SEEEGAAIHILESLFGKKISDYMIVVFTGGDELE  151 (225)
Q Consensus        73 liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~  151 (225)
                      ||||||+.+           +...+......+|++|+|+|+++.. .....+.+..+... +.   +|+++|+||+|+..
T Consensus        87 iiDtPGh~~-----------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~---~~iivviNK~Dl~~  151 (410)
T 1kk1_A           87 FIDAPGHEA-----------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQ---KNIIIAQNKIELVD  151 (410)
T ss_dssp             EEECSSHHH-----------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSC
T ss_pred             EEECCChHH-----------HHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CC---CcEEEEEECccCCC
Confidence            999999642           2333334455779999999998665 55666666655442 22   58999999999765


Q ss_pred             CCcccHHHHhhhcCCchHHHHHHHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          152 DNDETLEDYLGRECPKPLKEILQLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ..  ...+..++     +++++..... .+    ...+.|+.++.++++|++.|.+.++..
T Consensus       152 ~~--~~~~~~~~-----i~~~l~~~~~~~~----~~i~vSA~~g~gi~~L~~~l~~~~~~p  201 (410)
T 1kk1_A          152 KE--KALENYRQ-----IKEFIEGTVAENA----PIIPISALHGANIDVLVKAIEDFIPTP  201 (410)
T ss_dssp             HH--HHHHHHHH-----HHHHHTTSTTTTC----CEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             HH--HHHHHHHH-----HHHHHHhcCcCCC----eEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence            42  22222233     4445543211 11    122446677799999999998876644

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.70  E-value=6.1e-16  Score=118.14  Aligned_cols=175  Identities=14%  Similarity=0.223  Sum_probs=98.6

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCc--HHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS--EFVSKEI   93 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~--~~~~~~~   93 (225)
                      ..+..+|+++|++|+|||||+|+|++...........+.|.....  +.+ ++ .+.++||||+.......  .+.+...
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~--~~~-~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~   98 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL--FEV-AD-GKRLVDLPGYGYAEVPEEMKRKWQRA   98 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE--EEE-ET-TEEEEECCCCC------CCHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE--EEe-cC-CEEEEECcCCcccccCHHHHHHHHHH
Confidence            455689999999999999999999987622111223344443322  333 22 68899999986532111  1112222


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                      ..........++++++|+|+....+..+.+..+++..     ...|++++.||+|.....  ........     ++.++
T Consensus        99 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-----~~~~~~~v~nK~D~~s~~--~~~~~~~~-----~~~~~  166 (210)
T 1pui_A           99 LGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-----SNIAVLVLLTKADKLASG--ARKAQLNM-----VREAV  166 (210)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGGSCHH--HHHHHHHH-----HHHHH
T ss_pred             HHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-----cCCCeEEEEecccCCCch--hHHHHHHH-----HHHHH
Confidence            2222222356799999999976666555555555543     236888999999976432  11111222     44455


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      ...+.....    .+.|+..+.+++++++.|.++..+
T Consensus       167 ~~~~~~~~~----~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          167 LAFNGDVQV----ETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             GGGCSCEEE----EECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             HhcCCCCce----EEEeecCCCCHHHHHHHHHHHHhh
Confidence            444432222    234556678999999999887655

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.70  E-value=6.2e-17  Score=120.64  Aligned_cols=167  Identities=16%  Similarity=0.061  Sum_probs=92.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ...++|+++|.+|+|||||+|++++......   ..+++.......+... ....+.+|||||.....           .
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~   71 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTD---YVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYN-----------R   71 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC-------------CBCCCC-------CEEECCCC-CTTT-----------T
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCC---CCCeeeeeEEEEEEECCEEEEEEEEECCCChhhh-----------h
Confidence            4568999999999999999999997653211   1111111111112220 22356799999976543           1


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHh---hhcCCchHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL---GRECPKPLK  170 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~---~~~~~~~~~  170 (225)
                      .+..+...+|++++|+|+.++.+....  .++..+.....   ..|+++|+||+|+....  ......   .....+...
T Consensus        72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~~--~~~~~~~~~~~v~~~~~~  146 (182)
T 3bwd_D           72 LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP---GVPIVLVGTKLDLRDDK--QFFIDHPGAVPITTVQGE  146 (182)
T ss_dssp             TGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHTCH--HHHHHC--CCCCCHHHHH
T ss_pred             hHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhhcCc--ccccccccCCCCCHHHHH
Confidence            223456688999999999744332222  24444544322   47999999999976542  110000   000011134


Q ss_pred             HHHHHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          171 EILQLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       171 ~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                      ++....+. .++      ..|+.++.+++++++.|.+.+
T Consensus       147 ~~~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i  179 (182)
T 3bwd_D          147 ELKKLIGAPAYI------ECSSKSQENVKGVFDAAIRVV  179 (182)
T ss_dssp             HHHHHHTCSEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHcCCCEEE------EEECCCCCCHHHHHHHHHHHH
Confidence            44444453 332      345667799999999997765

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.70  E-value=1.1e-16  Score=128.83  Aligned_cols=173  Identities=12%  Similarity=0.135  Sum_probs=97.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCC----CCC----------------------ceeE-------------
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAG----SSG----------------------VTKT-------------   57 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~----~~~----------------------~t~~-------------   57 (225)
                      ...++|+|+|.+|+|||||+|+|++....+....    .++                      +|..             
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i  103 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence            4568999999999999999999999875422110    011                      1100             


Q ss_pred             ----------EEEEEEEeeCCceEEEEeCCCCCCCCC--CcHHHHHHHHHHHhhcCCCccEEE-EEEeCCCCCCHHHH-H
Q 036158           58 ----------CEMQRTMLKDGQVVNVIDTPGLFDSSA--DSEFVSKEIVKCIGMTKDGIHAVL-VVFSVRNRFSEEEG-A  123 (225)
Q Consensus        58 ----------~~~~~~~~~~~~~~~liDtPG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ii-~v~~~~~~~~~~~~-~  123 (225)
                                .....+..+....+.||||||+.+...  ..+.....+...+..+...++.++ +|+|+...++..+. .
T Consensus       104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~  183 (299)
T 2aka_B          104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  183 (299)
T ss_dssp             CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred             cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence                      001111222246899999999985431  012122233344444444566555 78898755555442 2


Q ss_pred             HHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHH
Q 036158          124 AIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSL  203 (225)
Q Consensus       124 ~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~  203 (225)
                      +++.+..     ...|+++|+||+|...... ...+....        .+..+...+.   .....||.++.++++|++.
T Consensus       184 ~~~~~~~-----~~~~~i~V~NK~Dl~~~~~-~~~~~~~~--------~~~~~~~~~~---~v~~~SA~~~~gi~~l~~~  246 (299)
T 2aka_B          184 IAKEVDP-----QGQRTIGVITKLDLMDEGT-DARDVLEN--------KLLPLRRGYI---GVVNRSQKDIDGKKDITAA  246 (299)
T ss_dssp             HHHHHCT-----TCSSEEEEEECGGGSCTTC-CCHHHHTT--------CSSCCTTCEE---ECCCCCCBCTTSCBCHHHH
T ss_pred             HHHHhCC-----CCCeEEEEEEccccCCCCc-hHHHHHhC--------CcCcCCCCcE---EEECCChhhccccccHHHH
Confidence            3333321     2479999999999876531 11222111        0001111222   2345677788899999888


Q ss_pred             HHH
Q 036158          204 VNS  206 (225)
Q Consensus       204 i~~  206 (225)
                      |.+
T Consensus       247 l~~  249 (299)
T 2aka_B          247 LAA  249 (299)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            866

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.70  E-value=2.3e-16  Score=132.41  Aligned_cols=171  Identities=16%  Similarity=0.123  Sum_probs=103.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCcee--------------EEEEEEEEe----eCCceEEEEeCC
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTK--------------TCEMQRTML----KDGQVVNVIDTP   77 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~--------------~~~~~~~~~----~~~~~~~liDtP   77 (225)
                      ..+.++|+++|++|+|||||+|+|++....... .....+.              ........+    .....+.|||||
T Consensus         5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP   83 (403)
T 3sjy_A            5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKL-GYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP   83 (403)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSS-EEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCccccccc-CccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence            456799999999999999999999985421110 0000000              000000000    012579999999


Q ss_pred             CCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCccc
Q 036158           78 GLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRF-SEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDET  156 (225)
Q Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~  156 (225)
                      |+.++       ...+    ......+|++|+|+|+.+.. .....+.+..+... +.   +|+++|+||+|+....  .
T Consensus        84 Gh~~~-------~~~~----~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~---~~iivviNK~Dl~~~~--~  146 (403)
T 3sjy_A           84 GHEVL-------MATM----LSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GV---KNLIIVQNKVDVVSKE--E  146 (403)
T ss_dssp             CCGGG-------HHHH----HHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSCHH--H
T ss_pred             CcHHH-------HHHH----HHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CC---CCEEEEEECccccchH--H
Confidence            97543       2222    23345679999999998665 55556666655543 22   5899999999987542  3


Q ss_pred             HHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          157 LEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                      ..+..++     +.+.+..++....   ...+.|+.++.++++|++.|.+.+....
T Consensus       147 ~~~~~~~-----i~~~l~~~~~~~~---~ii~vSA~~g~gi~~L~~~l~~~l~~~~  194 (403)
T 3sjy_A          147 ALSQYRQ-----IKQFTKGTWAENV---PIIPVSALHKINIDSLIEGIEEYIKTPY  194 (403)
T ss_dssp             HHHHHHH-----HHHHHTTSTTTTC---CEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHH-----HHHHHHhhCCCCC---EEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence            3333333     4555544332111   1234566778999999999998776543

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.69  E-value=1.7e-18  Score=149.12  Aligned_cols=163  Identities=14%  Similarity=0.154  Sum_probs=111.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      ..++|+++|++|+|||||+|+|.+......  ..++.|.+...+.+.++.+..+.||||||+.++...           .
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~--~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~-----------~   69 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAM--EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAM-----------R   69 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHS--SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTS-----------B
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccc--cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHH-----------H
Confidence            357899999999999999999997764332  345566666555566555678999999998765422           2


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH---HH
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI---LQ  174 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~---~~  174 (225)
                      ......+|++|+|+|++++....+.+.+..+...     ..|+++++||+|+...........        +.+.   .+
T Consensus        70 ~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~-----~vPiIVViNKiDl~~~~~~~v~~~--------l~~~~~~~e  136 (537)
T 3izy_P           70 ARGTQVTDIVILVVAADDGVMKQTVESIQHAKDA-----HVPIVLAINKCDKAEADPEKVKKE--------LLAYDVVCE  136 (537)
T ss_dssp             BSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTT-----TCCEEECCBSGGGTTTSCCSSSSH--------HHHTTSCCC
T ss_pred             HHHHccCCEEEEEEECCCCccHHHHHHHHHHHHc-----CCcEEEEEecccccccchHHHHHH--------HHhhhhhHH
Confidence            2456678999999999877777777766655542     368999999999865432111111        1111   11


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      .++..+    ...+.|+.++.++++|++.|..+...
T Consensus       137 ~~~~~~----~iv~vSAktG~GI~eLle~I~~l~~~  168 (537)
T 3izy_P          137 DYGGDV----QAVHVSALTGENMMALAEATIALAEM  168 (537)
T ss_dssp             CSSSSE----EECCCCSSSSCSSHHHHHHHHHHHTT
T ss_pred             hcCCCc----eEEEEECCCCCCchhHHHHHHHhhhc
Confidence            112222    23456778889999999999887753

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.68  E-value=2.2e-16  Score=130.62  Aligned_cols=133  Identities=20%  Similarity=0.203  Sum_probs=82.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCC--ce----------------------------------------
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSG--VT----------------------------------------   55 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~--~t----------------------------------------   55 (225)
                      ..++|+|+|.+|+|||||+|+|+|....+.......  .+                                        
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            456999999999999999999999775433221110  00                                        


Q ss_pred             ----------eEEEEEEEEeeCCceEEEEeCCCCCCCCC--CcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHH
Q 036158           56 ----------KTCEMQRTMLKDGQVVNVIDTPGLFDSSA--DSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGA  123 (225)
Q Consensus        56 ----------~~~~~~~~~~~~~~~~~liDtPG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~  123 (225)
                                .......+..+....+.||||||+.....  ........+...+..+...+|++|+|++.. ........
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~-~~~~~~~~  191 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPA-NQDLATSD  191 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEET-TSCGGGCH
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecc-cCCcCCHH
Confidence                      00001111222345799999999987532  122344455566666677889999998764 11222223


Q ss_pred             HHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158          124 AIHILESLFGKKISDYMIVVFTGGDELEDN  153 (225)
Q Consensus       124 ~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~  153 (225)
                      .+..+.....  ...|+++|+||+|.....
T Consensus       192 ~~~l~~~~~~--~~~~~i~V~nK~Dl~~~~  219 (360)
T 3t34_A          192 AIKISREVDP--SGDRTFGVLTKIDLMDKG  219 (360)
T ss_dssp             HHHHHHHSCT--TCTTEEEEEECGGGCCTT
T ss_pred             HHHHHHHhcc--cCCCEEEEEeCCccCCCc
Confidence            4444444322  236899999999988654

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.68  E-value=5.7e-16  Score=135.27  Aligned_cols=116  Identities=16%  Similarity=0.208  Sum_probs=79.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-----------------CCceEEEEeCCCCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-----------------DGQVVNVIDTPGLF   80 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~liDtPG~~   80 (225)
                      ..++|+++|++|+|||||+++|++.......  ..+.|.......+.+.                 ....++||||||+.
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e--~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe   81 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASRE--AGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE   81 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCcccc--CCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence            3578999999999999999999976542211  1123322222222210                 11259999999998


Q ss_pred             CCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158           81 DSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELE  151 (225)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~  151 (225)
                      ++....           ......+|++|+|+|+++++...+.+.+..+...     ..|+++++||+|+..
T Consensus        82 ~F~~~~-----------~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~-----~vPiIVViNKiDl~~  136 (594)
T 1g7s_A           82 AFTTLR-----------KRGGALADLAILIVDINEGFKPQTQEALNILRMY-----RTPFVVAANKIDRIH  136 (594)
T ss_dssp             CCTTSB-----------CSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGST
T ss_pred             HHHHHH-----------HHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHc-----CCeEEEEeccccccc
Confidence            764221           2345678999999999877777777777766542     379999999999864

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.67  E-value=2.3e-16  Score=130.40  Aligned_cols=151  Identities=18%  Similarity=0.238  Sum_probs=77.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCC-----CCceeEEEEEEEEee-CCc--eEEEEeCCCCCCCCCCc---
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGS-----SGVTKTCEMQRTMLK-DGQ--VVNVIDTPGLFDSSADS---   86 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~-----~~~t~~~~~~~~~~~-~~~--~~~liDtPG~~~~~~~~---   86 (225)
                      ..++|+|+|++|+|||||+|+|++...+......     ...|.........+. .+.  .+.+|||||+++.....   
T Consensus        36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~  115 (361)
T 2qag_A           36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF  115 (361)
T ss_dssp             CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence            4588999999999999999999987654332211     112333333333221 232  68999999997653211   


Q ss_pred             ----HHHHHHHHHHHhh---------cCCCccEEEEEEeC-CCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158           87 ----EFVSKEIVKCIGM---------TKDGIHAVLVVFSV-RNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED  152 (225)
Q Consensus        87 ----~~~~~~~~~~~~~---------~~~~~~~ii~v~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~  152 (225)
                          ..+...+..++..         ....+|+++|+++. ...+...+..+++.+.    .  ..|+++|+||+|....
T Consensus       116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~----~--~~piIlV~NK~Dl~~~  189 (361)
T 2qag_A          116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH----N--KVNIVPVIAKADTLTL  189 (361)
T ss_dssp             CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC----S---SCEEEEEECCSSSCH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc----c--CCCEEEEEECCCCCCH
Confidence                1122222222221         12346788888875 4567776655554442    2  3799999999998754


Q ss_pred             CcccHHHHhhhcCCchHHHHHHHcCCcEE
Q 036158          153 NDETLEDYLGRECPKPLKEILQLCDNRCV  181 (225)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (225)
                      .  .+..+..+     +.+.++.++.+++
T Consensus       190 ~--ev~~~k~~-----i~~~~~~~~i~~~  211 (361)
T 2qag_A          190 K--ERERLKKR-----ILDEIEEHNIKIY  211 (361)
T ss_dssp             H--HHHHHHHH-----HHHHTTCC-CCSC
T ss_pred             H--HHHHHHHH-----HHHHHHHCCCCEE
Confidence            2  34333333     4555555554443

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.67  E-value=3.8e-16  Score=117.06  Aligned_cols=169  Identities=18%  Similarity=0.153  Sum_probs=87.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCc-cccccCCCCCceeEEEEEEEEe------eCCceEEEEeCCCCCCCCCCcHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKR-AFKSKAGSSGVTKTCEMQRTML------KDGQVVNVIDTPGLFDSSADSEFVSK   91 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~-~~~~~~~~~~~t~~~~~~~~~~------~~~~~~~liDtPG~~~~~~~~~~~~~   91 (225)
                      .++|+|+|.+|+|||||+|+|.+.. .+..   ....|.........+      .....+.+|||||...+         
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~---~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------   69 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLG---MQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEF---------   69 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC--------------CSEEEEEEEC---------CEEEEEEECSHHHH---------
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCC---CcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHH---------
Confidence            4789999999999999999999863 2211   111222222222211      13458999999995421         


Q ss_pred             HHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158           92 EIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE  171 (225)
Q Consensus        92 ~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~  171 (225)
                        ......++.+++++++|+|.+++... ...+..++.+........|+++|.||+|+....  ...+....    ...+
T Consensus        70 --~~~~~~~~~~~~~~i~v~d~~~~~~s-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~----~~~~  140 (184)
T 2zej_A           70 --YSTHPHFMTQRALYLAVYDLSKGQAE-VDAMKPWLFNIKARASSSPVILVGTHLDVSDEK--QRKACMSK----ITKE  140 (184)
T ss_dssp             --HTTSHHHHHHSEEEEEEEEGGGCHHH-HHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHH--HHHHHHHH----HHHH
T ss_pred             --HHhhHHHccCCcEEEEEEeCCcchhH-HHHHHHHHHHHHhhCCCCcEEEEEECCCcccch--hhHHHHHH----HHHH
Confidence              11112233356999999998743211 112223333322111237899999999975431  22111111    0122


Q ss_pred             HHHHcCCcEEEeeCCCccccccH-HHHHHHHHHHHHHHHH
Q 036158          172 ILQLCDNRCVLFDNKTKDTAKRT-EQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~~l~~~i~~~~~~  210 (225)
                      +.+..+....  ......||+++ .++++|++.|.+.+.+
T Consensus       141 ~~~~~~~~~~--~~~~~~Sa~~~~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          141 LLNKRGFPAI--RDYHFVNATEESDALAKLRKTIINESLN  178 (184)
T ss_dssp             TTTCTTSCEE--EEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred             HHHhcCCcch--hheEEEecccCchhHHHHHHHHHHHHhc
Confidence            2222233210  01223455566 4899999999877654

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.67  E-value=3.1e-16  Score=118.12  Aligned_cols=129  Identities=9%  Similarity=0.138  Sum_probs=76.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ...++|+++|.+|+|||||+|+|.+........ ....+..     ..+ .+..+.+|||||.........       .+
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~-~~~~~~~-----~~~-~~~~~~l~Dt~G~~~~~~~~~-------~~  111 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV-SQEPLSA-----ADY-DGSGVTLVDFPGHVKLRYKLS-------DY  111 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------------CC-CCTTCSEEEETTCCBSSCCHH-------HH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccc-cCCCcee-----eee-cCCeEEEEECCCCchHHHHHH-------HH
Confidence            567899999999999999999999876322110 1111111     112 466789999999976542221       12


Q ss_pred             HhhcCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcc-----cccccEEEEEecCCCCCCCcccHHHHhhh
Q 036158           97 IGMTKDGIHAVLVVFSVR-NRFSEEEGAAIHILESLFGK-----KISDYMIVVFTGGDELEDNDETLEDYLGR  163 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~-~~~~~~~~~~~~~l~~~~~~-----~~~~~~~vv~~k~D~~~~~~~~~~~~~~~  163 (225)
                      +......+|++|+|+|+. +.  ........++...+..     ....|+++|+||+|.....  ..++..+.
T Consensus       112 ~~~~~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--~~~~~~~~  180 (193)
T 2ged_A          112 LKTRAKFVKGLIFMVDSTVDP--KKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR--PPSKIKDA  180 (193)
T ss_dssp             HHHHGGGEEEEEEEEETTCCH--HHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC--CHHHHHHH
T ss_pred             HHhhcccCCEEEEEEECCCCc--hhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC--CHHHHHHH
Confidence            222224579999999987 22  1222233333333221     1247999999999987664  44444443

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.66  E-value=4.9e-16  Score=128.33  Aligned_cols=126  Identities=15%  Similarity=0.179  Sum_probs=89.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      .....+|+++|.||+|||||+|+|++....  ....+++|.++....+.+ .+..+.|+||||+............++..
T Consensus        69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~--v~~~pftT~~~~~g~~~~-~~~~i~l~D~pGl~~~a~~~~~~g~~~l~  145 (376)
T 4a9a_A           69 RTGVASVGFVGFPSVGKSTLLSKLTGTESE--AAEYEFTTLVTVPGVIRY-KGAKIQMLDLPGIIDGAKDGRGRGKQVIA  145 (376)
T ss_dssp             BCSSEEEEEECCCCHHHHHHHHHHHSBCCC--GGGTCSSCCCEEEEEEEE-TTEEEEEEECGGGCCC-----CHHHHHHH
T ss_pred             ecCCCeEEEECCCCCCHHHHHHHHhCCCCc--ccCCCCceeeeeeEEEEe-CCcEEEEEeCCCccCCchhhhHHHHHHHH
Confidence            344589999999999999999999998753  245678999999888888 88999999999998765555555556655


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc-ccccEEEEEecCCCC
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK-ISDYMIVVFTGGDEL  150 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~vv~~k~D~~  150 (225)
                      .+..    +|++++|+|+.+++  .+.+.++.-.+.++.+ ..+|..+++||+|..
T Consensus       146 ~i~~----ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~  195 (376)
T 4a9a_A          146 VART----CNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKG  195 (376)
T ss_dssp             HHHH----CSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred             HHHh----cCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence            5544    49999999997543  2333333222333333 346889999999963

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.48  E-value=5.8e-18  Score=129.01  Aligned_cols=168  Identities=14%  Similarity=0.011  Sum_probs=96.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ...++|+++|.+|+|||||+|++++......   ...++.......+... ....+.+|||||..+..           .
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~   93 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGE---YIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD-----------R   93 (204)
Confidence            4579999999999999999999997654211   1122222222222221 22356799999975432           2


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhh----hcCCchH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLG----RECPKPL  169 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~----~~~~~~~  169 (225)
                      ....+...+|++++|+|+.++.+..+.  .++..+.....   ..|+++|+||+|+.... ...+....    .......
T Consensus        94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~v~~~~~  169 (204)
T 3th5_A           94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDDK-DTIEKLKEKKLTPITYPQG  169 (204)
Confidence            223355678999999998744333322  34444444322   37999999999986542 11111100    0000112


Q ss_pred             HHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          170 KEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                      .++.+..+.     ......|+.++.+++++++.|.+.
T Consensus       170 ~~~~~~~~~-----~~~~~vSA~~g~gi~~l~~~l~~~  202 (204)
T 3th5_A          170 LAMAKEIGA-----VKYLECSALTQRGLKTVFDEAIRA  202 (204)
Confidence            222222221     123456778889999999988654

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.66  E-value=7.7e-16  Score=136.81  Aligned_cols=171  Identities=13%  Similarity=0.166  Sum_probs=104.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCC--------------------------------------------
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSS--------------------------------------------   52 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~--------------------------------------------   52 (225)
                      ...++|+|+|.+++|||||+|+|+|...++.+....                                            
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            456899999999999999999999987644432110                                            


Q ss_pred             -----CceeEEEEEEEEeeCCceEEEEeCCCCCCCCC--CcHHHHHHHHHHHhhcC-CCccEEEEEEeCCCCCCHHHH-H
Q 036158           53 -----GVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA--DSEFVSKEIVKCIGMTK-DGIHAVLVVFSVRNRFSEEEG-A  123 (225)
Q Consensus        53 -----~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~ii~v~~~~~~~~~~~~-~  123 (225)
                           +.+...-...+..+....++|+||||+.....  ....+...+...+..+. ..+|++++|+|+...+...+. .
T Consensus       129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~  208 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  208 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred             cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence                 01111122233444556799999999987432  11112222222222222 578999999999866666664 4


Q ss_pred             HHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH--cCCcEEEeeCCCccccccHHHHHHHH
Q 036158          124 AIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL--CDNRCVLFDNKTKDTAKRTEQVGKLL  201 (225)
Q Consensus       124 ~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~  201 (225)
                      +++.+..     ...|+++|+||+|....... ..            .+++.  ...+ ..|....+.||.++.++++|+
T Consensus       209 ll~~L~~-----~g~pvIlVlNKiDlv~~~~~-~~------------~il~~~~~~l~-lg~~~VV~iSA~~G~GvdeL~  269 (772)
T 3zvr_A          209 IAKEVDP-----QGQRTIGVITKLDLMDEGTD-AR------------DVLENKLLPLR-RGYIGVVNRSQKDIDGKKDIT  269 (772)
T ss_dssp             HHHHHCT-----TCSSEEEEEECTTSSCTTCC-SH------------HHHTTCSSCCS-SCEEECCCCCCEESSSSEEHH
T ss_pred             HHHHHHh-----cCCCEEEEEeCcccCCcchh-hH------------HHHHHHhhhhh-ccCCceEEecccccccchhHH
Confidence            5544433     23799999999998865411 11            11110  0000 013344566788889999999


Q ss_pred             HHHHH
Q 036158          202 SLVNS  206 (225)
Q Consensus       202 ~~i~~  206 (225)
                      +.|.+
T Consensus       270 eaI~~  274 (772)
T 3zvr_A          270 AALAA  274 (772)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99876

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.66  E-value=3.8e-15  Score=124.81  Aligned_cols=170  Identities=13%  Similarity=0.115  Sum_probs=102.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (225)
                      ..|+|+|++|+|||||+|+|++.....  ...+.+|.......+.+.+...++++||||+.+.......+...+.+.   
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i--~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~---  232 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKI--APYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRH---  232 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEE--CCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHH---
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccc--cCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHH---
Confidence            348999999999999999999886422  234445555555556663347899999999975321111111222222   


Q ss_pred             cCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158          100 TKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN  178 (225)
Q Consensus       100 ~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (225)
                       ...++.+++|+++. +-...+ ....+.+..+...-...|.++|+||+|....      +....     +.+.++..+.
T Consensus       233 -~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~------~~~~~-----l~~~l~~~g~  299 (416)
T 1udx_A          233 -IARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE------EAVKA-----LADALAREGL  299 (416)
T ss_dssp             -HTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH------HHHHH-----HHHHHHTTTS
T ss_pred             -HHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH------HHHHH-----HHHHHHhcCC
Confidence             24679999999985 211112 1222333332111123789999999996532      12222     3344443343


Q ss_pred             cEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158          179 RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG  213 (225)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~  213 (225)
                      .++      ..||.++.++++|++.|.+++.+...
T Consensus       300 ~vi------~iSA~~g~gi~eL~~~i~~~l~~~~~  328 (416)
T 1udx_A          300 AVL------PVSALTGAGLPALKEALHALVRSTPP  328 (416)
T ss_dssp             CEE------ECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred             eEE------EEECCCccCHHHHHHHHHHHHHhccc
Confidence            332      34455668999999999999987654

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.65  E-value=1.3e-15  Score=132.99  Aligned_cols=166  Identities=19%  Similarity=0.176  Sum_probs=99.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccc-------------cCCCCCceeEEEEEEEEeeC----CceEEEEeCCCCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKS-------------KAGSSGVTKTCEMQRTMLKD----GQVVNVIDTPGLF   80 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~-------------~~~~~~~t~~~~~~~~~~~~----~~~~~liDtPG~~   80 (225)
                      ...+|+++|+.|+|||||+++|+.......             .....+.|.......+.|..    +..++||||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            458999999999999999999986321100             01123445555555555531    2579999999997


Q ss_pred             CCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHH
Q 036158           81 DSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDY  160 (225)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~  160 (225)
                      ++.       ..+...+    ..+|++|+|+|+.++....+...+......     ..|+++++||+|....   ..++.
T Consensus        83 dF~-------~ev~~~l----~~aD~aILVVDa~~gv~~qt~~~~~~~~~~-----~ipiIvViNKiDl~~a---~~~~v  143 (599)
T 3cb4_D           83 DFS-------YEVSRSL----AACEGALLVVDAGQGVEAQTLANCYTAMEM-----DLEVVPVLNKIDLPAA---DPERV  143 (599)
T ss_dssp             GGH-------HHHHHHH----HHCSEEEEEEETTTCCCTHHHHHHHHHHHT-----TCEEEEEEECTTSTTC---CHHHH
T ss_pred             HHH-------HHHHHHH----HHCCEEEEEEECCCCCCHHHHHHHHHHHHC-----CCCEEEeeeccCcccc---cHHHH
Confidence            652       2333333    345999999999877776666655544431     3789999999998654   23333


Q ss_pred             hhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158          161 LGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG  213 (225)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~  213 (225)
                      .++     +.+   ..+..   .......|+.++.++++|++.|.+.++...+
T Consensus       144 ~~e-----i~~---~lg~~---~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~  185 (599)
T 3cb4_D          144 AEE-----IED---IVGID---ATDAVRCSAKTGVGVQDVLERLVRDIPPPEG  185 (599)
T ss_dssp             HHH-----HHH---HTCCC---CTTCEEECTTTCTTHHHHHHHHHHHSCCCCC
T ss_pred             HHH-----HHH---HhCCC---cceEEEeecccCCCchhHHHHHhhcCCCccc
Confidence            222     222   22321   0123456777889999999999888776543

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.64  E-value=1e-15  Score=133.50  Aligned_cols=166  Identities=19%  Similarity=0.211  Sum_probs=101.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcccccc-------------CCCCCceeEEEEEEEEee--C--CceEEEEeCCCC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSK-------------AGSSGVTKTCEMQRTMLK--D--GQVVNVIDTPGL   79 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~-------------~~~~~~t~~~~~~~~~~~--~--~~~~~liDtPG~   79 (225)
                      ....+|+++|+.|+|||||+++|+........             ....+.|.......+.|.  +  ...++||||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            34689999999999999999999753211000             011233443333344442  1  257899999999


Q ss_pred             CCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHH
Q 036158           80 FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLED  159 (225)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~  159 (225)
                      .++.       ..+...    ...+|++|+|+|+.++....+...+......     ..|+++++||+|+...   ..++
T Consensus        84 ~dF~-------~ev~r~----l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~-----~ipiIvviNKiDl~~a---~~~~  144 (600)
T 2ywe_A           84 VDFS-------YEVSRA----LAACEGALLLIDASQGIEAQTVANFWKAVEQ-----DLVIIPVINKIDLPSA---DVDR  144 (600)
T ss_dssp             GGGH-------HHHHHH----HHTCSEEEEEEETTTBCCHHHHHHHHHHHHT-----TCEEEEEEECTTSTTC---CHHH
T ss_pred             HhHH-------HHHHHH----HHhCCEEEEEEECCCCccHHHHHHHHHHHHC-----CCCEEEEEeccCcccc---CHHH
Confidence            8652       223333    3456999999999877777766655544431     3789999999998654   2333


Q ss_pred             HhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          160 YLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                      ..++        +.+..+..   .......|+.++.++++|++.|.+.++...
T Consensus       145 v~~e--------l~~~lg~~---~~~vi~vSAktg~GI~~Lle~I~~~lp~p~  186 (600)
T 2ywe_A          145 VKKQ--------IEEVLGLD---PEEAILASAKEGIGIEEILEAIVNRIPPPK  186 (600)
T ss_dssp             HHHH--------HHHTSCCC---GGGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             HHHH--------HHHhhCCC---cccEEEEEeecCCCchHHHHHHHHhccccc
Confidence            3222        22223321   012455677888999999999988887654

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.64  E-value=3.3e-15  Score=112.85  Aligned_cols=166  Identities=18%  Similarity=0.161  Sum_probs=93.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcc-ccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRA-FKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEI   93 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~   93 (225)
                      ...++|+++|.+|+|||||+|++.+... +...  ...++.+.....+.+ ++.  .+.+|||+|......       .+
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~l~~~Dt~~~~~~~~-------~~   73 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD--XEVLGEDTYERTLMV-DGESATIILLDMWENKGENE-------WL   73 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC------GGGCTTEEEEEEEE-TTEEEEEEEECCCCC----C-------TT
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc--ccccceeEEEEEEEE-CCeEEEEEEEEeccCcchhh-------hH
Confidence            3468999999999999999999986432 1111  112222222233455 454  567899999653100       01


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI  172 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (225)
                         ...++..+|++++|++++++-+-.. ..++..+.+... ....|+++|.||+|+........++         .+.+
T Consensus        74 ---~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~r~v~~~~---------~~~~  140 (192)
T 2cjw_A           74 ---HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRXREVSVSE---------GRAX  140 (192)
T ss_dssp             ---GGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECTTCGGGCCSCHHH---------HHHH
T ss_pred             ---HHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCeEEEEEechhhhccccccHHH---------HHHH
Confidence               1122335699999999974432222 223333443221 1247999999999976432111111         1222


Q ss_pred             HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          173 LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ....+..+      ...||.++.+++++++.+.+.+...
T Consensus       141 a~~~~~~~------~e~SA~~g~~v~~lf~~l~~~~~~~  173 (192)
T 2cjw_A          141 AVVFDXKF------IETSAAVQHNVKELFEGIVRQVRLR  173 (192)
T ss_dssp             HHHTTCEE------EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HHHhCCce------EEeccccCCCHHHHHHHHHHHHHhh
Confidence            22333322      2456777899999999998877544

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.64  E-value=1e-15  Score=134.34  Aligned_cols=160  Identities=16%  Similarity=0.166  Sum_probs=104.4

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccC-----------------------------CCCCceeEEEEEEEEee
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKA-----------------------------GSSGVTKTCEMQRTMLK   66 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~-----------------------------~~~~~t~~~~~~~~~~~   66 (225)
                      ..+.++|+++|++|+|||||+|+|++........                             ...+.|.......+.+ 
T Consensus       164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-  242 (611)
T 3izq_1          164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-  242 (611)
T ss_dssp             CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-
Confidence            3567999999999999999999999764321100                             0135676666666777 


Q ss_pred             CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhccccccc
Q 036158           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNR-------FSEEEGAAIHILESLFGKKISDY  139 (225)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~  139 (225)
                      .+..+.||||||+.+           +...+......+|++|+|+|+..+       ......+.+..+.. ++   .++
T Consensus       243 ~~~~~~iiDTPG~e~-----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lg---i~~  307 (611)
T 3izq_1          243 HRANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LG---IHN  307 (611)
T ss_dssp             SSCEEEEEECCSSSC-----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TT---CCE
T ss_pred             CCceEEEEECCCCcc-----------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cC---CCe
Confidence            788999999999864           234444567789999999999742       22334444444433 22   256


Q ss_pred             EEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc---EEEeeCCCccccccHHHHHHH
Q 036158          140 MIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR---CVLFDNKTKDTAKRTEQVGKL  200 (225)
Q Consensus       140 ~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~l  200 (225)
                      +++|+||+|+........++...+     +..++..++..   ...    .+.||.++.++.++
T Consensus       308 iIVVvNKiDl~~~~~~~~~ei~~~-----l~~~l~~~g~~~~~~~~----i~vSA~tG~gI~el  362 (611)
T 3izq_1          308 LIIAMNKMDNVDWSQQRFEEIKSK-----LLPYLVDIGFFEDNINW----VPISGFSGEGVYKI  362 (611)
T ss_dssp             EEEEEECTTTTTTCHHHHHHHHHH-----HHHHHHHHTCCGGGCEE----EECCTTTCTTTSSC
T ss_pred             EEEEEecccccchhHHHHHHHHHH-----HHHHHHhhcccccCccE----EeeecccCCCcccc
Confidence            999999999876443344544444     66667666642   222    23455566676643

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.64  E-value=3.9e-15  Score=129.07  Aligned_cols=119  Identities=16%  Similarity=0.243  Sum_probs=87.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccc--------------------cccCCCCCceeEEEEEEEEeeCCceEEEEeC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAF--------------------KSKAGSSGVTKTCEMQRTMLKDGQVVNVIDT   76 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~--------------------~~~~~~~~~t~~~~~~~~~~~~~~~~~liDt   76 (225)
                      ....+|+|+|+.++|||||..+|+.....                    .......+.|.......+.| ++..++||||
T Consensus        29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDT  107 (548)
T 3vqt_A           29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-RDRVVNLLDT  107 (548)
T ss_dssp             HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-TTEEEEEECC
T ss_pred             cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-CCEEEEEEeC
Confidence            35689999999999999999998732211                    01122345666667777888 8999999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158           77 PGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED  152 (225)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~  152 (225)
                      ||+.|+.       .++.+.+.    -+|++|+|+|+.++....+...++...+.     ..|.++++||+|....
T Consensus       108 PGHvDF~-------~Ev~raL~----~~DgAvlVvda~~GV~~qT~~v~~~a~~~-----~lp~i~fINK~Dr~~a  167 (548)
T 3vqt_A          108 PGHQDFS-------EDTYRVLT----AVDSALVVIDAAKGVEAQTRKLMDVCRMR-----ATPVMTFVNKMDREAL  167 (548)
T ss_dssp             CCGGGCS-------HHHHHHHH----SCSEEEEEEETTTBSCHHHHHHHHHHHHT-----TCCEEEEEECTTSCCC
T ss_pred             CCcHHHH-------HHHHHHHH----hcCceEEEeecCCCcccccHHHHHHHHHh-----CCceEEEEecccchhc
Confidence            9999984       23333333    45999999999889999998888887764     3799999999997655

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.64  E-value=2.7e-17  Score=140.54  Aligned_cols=161  Identities=14%  Similarity=0.170  Sum_probs=103.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      ..++|+++|++++|||||+++|.+......  ..++.|.+...+.+.+ ++..++||||||+.++...           +
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~--e~~GIT~~i~~~~v~~-~~~~i~~iDTPGhe~f~~~-----------~   68 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASG--EAGGITQHIGAYHVET-ENGMITFLDTPGHAAFTSM-----------R   68 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBT--TBCCCCCCSSCCCCCT-TSSCCCEECCCTTTCCTTS-----------B
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccc--cCCCeeEeEEEEEEEE-CCEEEEEEECCCcHHHHHH-----------H
Confidence            457899999999999999999987553211  2234555554455566 6778999999999876422           1


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      ......+|++|+|+|++++......+.+..+...     ..|+++++||+|+.......+...+.+ . ..   +.+.++
T Consensus        69 ~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~-----~vPiIVviNKiDl~~~~~~~v~~~l~~-~-~~---~~~~~~  138 (501)
T 1zo1_I           69 ARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAA-----QVPVVVAVNKIDKPEADPDRVKNELSQ-Y-GI---LPEEWG  138 (501)
T ss_dssp             CSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHT-----TCCEEEEEECSSSSTTCCCCTTCCCCC-C-CC---CTTCCS
T ss_pred             HHHHhhCCEEEEEeecccCccHHHHHHHHHHHhc-----CceEEEEEEeccccccCHHHHHHHHHH-h-hh---hHHHhC
Confidence            2345678999999999876666666666554432     378999999999865421122111111 0 00   011122


Q ss_pred             CcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158          178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNS  206 (225)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~  206 (225)
                      ..+.    ..+.|+.++.++++|++.|..
T Consensus       139 ~~~~----~v~vSAktG~gI~eLle~I~~  163 (501)
T 1zo1_I          139 GESQ----FVHVSAKAGTGIDELLDAILL  163 (501)
T ss_dssp             SSCE----EEECCTTTCTTCTTHHHHTTT
T ss_pred             CCcc----EEEEeeeeccCcchhhhhhhh
Confidence            1122    234566778999999999854

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.64  E-value=3.6e-15  Score=123.04  Aligned_cols=174  Identities=12%  Similarity=0.127  Sum_probs=96.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCC----CC----------------------ceeE-------------
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGS----SG----------------------VTKT-------------   57 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~----~~----------------------~t~~-------------   57 (225)
                      ...++|+|+|.+|+|||||+|+|+|....+.....    ++                      +|..             
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i  108 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  108 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence            34589999999999999999999998754222110    11                      0000             


Q ss_pred             ----------EEEEEEEeeCCceEEEEeCCCCCCCCCC--cHHHHHHHHHHHhhcC-CCccEEEEEEeCCCCCCHHHHHH
Q 036158           58 ----------CEMQRTMLKDGQVVNVIDTPGLFDSSAD--SEFVSKEIVKCIGMTK-DGIHAVLVVFSVRNRFSEEEGAA  124 (225)
Q Consensus        58 ----------~~~~~~~~~~~~~~~liDtPG~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~ii~v~~~~~~~~~~~~~~  124 (225)
                                .....+..+....++||||||+......  .....+.+...+..+. ...+++++|+++...+...+.  
T Consensus       109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~--  186 (353)
T 2x2e_A          109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA--  186 (353)
T ss_dssp             HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH--
T ss_pred             cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH--
Confidence                      0011112223568999999999864321  1222223333333333 344667777787654544442  


Q ss_pred             HHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHH
Q 036158          125 IHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLV  204 (225)
Q Consensus       125 ~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i  204 (225)
                      +..+.....  ...|+++|+||+|...... ...+......        ......+.   .....|+..+.++++|++.+
T Consensus       187 ~~i~~~~~~--~~~~~i~V~NK~Dl~~~~~-~~~~~~~~~~--------~~l~~~~~---~v~~~SA~~~~~i~~l~~~l  252 (353)
T 2x2e_A          187 LKVAKEVDP--QGQRTIGVITKLDLMDEGT-DARDVLENKL--------LPLRRGYI---GVVNRSQKDIDGKKDITAAL  252 (353)
T ss_dssp             HHHHHHHCT--TCTTEEEEEECGGGSCTTC-CCHHHHTTCS--------SCCTTCEE---ECCCCCHHHHHTTCCHHHHH
T ss_pred             HHHHHHhCc--CCCceEEEeccccccCcch-hHHHHHhCCc--------ccccCCce---EEEeCCcccccccccHHHHH
Confidence            233333322  2479999999999875531 1222221100        00111222   23456777888888888888


Q ss_pred             HH
Q 036158          205 NS  206 (225)
Q Consensus       205 ~~  206 (225)
                      .+
T Consensus       253 ~~  254 (353)
T 2x2e_A          253 AA  254 (353)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.63  E-value=4.5e-15  Score=120.95  Aligned_cols=168  Identities=15%  Similarity=0.070  Sum_probs=102.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ...++|+++|.+|+|||||+|++.+......   ..+++.......+.. ++.  .+.+|||||.....           
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~---~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~-----------  217 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGE---YIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYD-----------  217 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCS---CCCCSEEEEEEEEEE-TTEEEEEEEEEECCCGGGT-----------
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcc---cCCcccceeEEEEEE-CCEEEEEEEEeCCCchhhh-----------
Confidence            3458999999999999999999996654222   223333333333444 555  45599999976432           


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhh----cCCch
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR----ECPKP  168 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~----~~~~~  168 (225)
                      .....+...+|++++|+|+.++.+..+.  .++..+.....   ..|+++|+||+|+.... ...+.+...    .....
T Consensus       218 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~  293 (332)
T 2wkq_A          218 RLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRDDK-DTIEKLKEKKLTPITYPQ  293 (332)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHTCH-HHHHHHHHTTCCCCCHHH
T ss_pred             HHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhccccc-chhhhccccccccccHHH
Confidence            2233456788999999999754333222  23445544332   48999999999976542 111111110    01112


Q ss_pred             HHHHHHHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          169 LKEILQLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       169 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      ..++.+..+. .+      ...|+.++.+++++++.|.+.+.
T Consensus       294 ~~~~~~~~~~~~~------~~~Sa~~~~gi~~l~~~l~~~~~  329 (332)
T 2wkq_A          294 GLAMAKEIGAVKY------LECSALTQRGLKTVFDEAIRAVL  329 (332)
T ss_dssp             HHHHHHHTTCSEE------EECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCcEE------EEecCCCCcCHHHHHHHHHHHHh
Confidence            3344444443 22      23456677999999999987654

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.63  E-value=1.3e-14  Score=110.07  Aligned_cols=161  Identities=14%  Similarity=0.149  Sum_probs=96.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .++|+|+|++|+|||||+|+|.+.......  .+..+.......+.+ ++.  .+.+|||||........          
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~--~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~----------   71 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRIT----------   71 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCCC----------
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEEEEE-CCEEEEEEEEECCCchhhhhhh----------
Confidence            589999999999999999999987642221  222223333444555 554  57789999975432111          


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                       ......++++++|+|..+..+... ..++..+....  ....|+++|+||+|+........++         .+.+...
T Consensus        72 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~~~~~~~~~~---------a~~l~~~  139 (199)
T 2f9l_A           72 -SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLRHLRAVPTDE---------ARAFAEK  139 (199)
T ss_dssp             -HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred             -HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECcccccccCcCHHH---------HHHHHHH
Confidence             122346799999999874332222 12233333321  1247899999999976432111111         3455555


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      .+..  .+.    .|+..+.+++++++.|.+.+.+
T Consensus       140 ~~~~--~~d----~Sal~~~~i~~l~~~l~~~~~~  168 (199)
T 2f9l_A          140 NNLS--FIE----TSALDSTNVEEAFKNILTEIYR  168 (199)
T ss_dssp             TTCE--EEE----CCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCCe--EEE----EeCCCCCCHHHHHHHHHHHHHH
Confidence            5543  333    3555668899999888876654

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.63  E-value=7.2e-16  Score=137.25  Aligned_cols=124  Identities=18%  Similarity=0.223  Sum_probs=78.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCc-------------eeEE-------------------------
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGV-------------TKTC-------------------------   58 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~-------------t~~~-------------------------   58 (225)
                      ...++|+|+|.+|+|||||+|+|+|....++...+...             |...                         
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~  146 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA  146 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence            35689999999999999999999998865543322110             1100                         


Q ss_pred             --------------EEEEEEeeCC---ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH
Q 036158           59 --------------EMQRTMLKDG---QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEE  121 (225)
Q Consensus        59 --------------~~~~~~~~~~---~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~  121 (225)
                                    ....+.+|..   ..+.||||||+.+...        ....+..+...+|++|+|+|++...+..+
T Consensus       147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~--------~~~~~~~~i~~aD~vL~Vvda~~~~s~~e  218 (695)
T 2j69_A          147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA--------RNELSLGYVNNCHAILFVMRASQPCTLGE  218 (695)
T ss_dssp             HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT--------CHHHHTHHHHSSSEEEEEEETTSTTCHHH
T ss_pred             HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh--------HHHHHHHHHHhCCEEEEEEeCCCccchhH
Confidence                          0001111100   3699999999874311        11222234456799999999987777777


Q ss_pred             HHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158          122 GAAIHILESLFGKKISDYMIVVFTGGDELED  152 (225)
Q Consensus       122 ~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~  152 (225)
                      ...+...   +.. ...|+++|+||+|....
T Consensus       219 ~~~l~~~---l~~-~~~~iiiVlNK~Dl~~~  245 (695)
T 2j69_A          219 RRYLENY---IKG-RGLTVFFLVNAWDQVRE  245 (695)
T ss_dssp             HHHHHHH---TTT-SCCCEEEEEECGGGGGG
T ss_pred             HHHHHHH---HHh-hCCCEEEEEECcccccc
Confidence            6555321   111 23689999999997643

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.63  E-value=3.2e-15  Score=114.80  Aligned_cols=124  Identities=10%  Similarity=0.165  Sum_probs=74.6

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ....++|+++|++|+|||||+|+|.+........ ....|...     .+ ....+.+|||||+....       ..+..
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~-~~~~~~~~-----~~-~~~~~~l~Dt~G~~~~~-------~~~~~   74 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV-SQEPLSAA-----DY-DGSGVTLVDFPGHVKLR-------YKLSD   74 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCC-CSSCEEET-----TG-GGSSCEEEECCCCGGGT-------HHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeee-ecCceEEE-----Ee-eCceEEEEECCCcHHHH-------HHHHH
Confidence            3567899999999999999999999776422111 11112211     11 45678999999986442       12222


Q ss_pred             HHhhcCCCccEEEEEEeCC-C--CCCHHHHHHHHHHHHHhc-ccccccEEEEEecCCCCCCC
Q 036158           96 CIGMTKDGIHAVLVVFSVR-N--RFSEEEGAAIHILESLFG-KKISDYMIVVFTGGDELEDN  153 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~-~--~~~~~~~~~~~~l~~~~~-~~~~~~~~vv~~k~D~~~~~  153 (225)
                      ++......+|++|+|+|+. +  .+......+.+.+...-. .....|+++|+||+|+....
T Consensus        75 ~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  136 (218)
T 1nrj_B           75 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  136 (218)
T ss_dssp             HHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             HHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence            3322223479999999987 2  333223222233222110 11247999999999987664

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.62  E-value=2.3e-15  Score=127.45  Aligned_cols=140  Identities=21%  Similarity=0.304  Sum_probs=86.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCc-cccc----------------------------cCCCCCceeEEEEEEEEeeC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKR-AFKS----------------------------KAGSSGVTKTCEMQRTMLKD   67 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~-~~~~----------------------------~~~~~~~t~~~~~~~~~~~~   67 (225)
                      .+.++|+++|+.|+|||||+|+|++.. .+..                            .....+.|.......+.+ .
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-~   82 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-K   82 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-S
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec-C
Confidence            467899999999999999999998642 1100                            011345666666666777 7


Q ss_pred             CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccccE
Q 036158           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNR-------FSEEEGAAIHILESLFGKKISDYM  140 (225)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~  140 (225)
                      +..+.||||||+.++           ...+......+|++|+|+|+.+.       ......+.+..+.. .+   .+++
T Consensus        83 ~~~~~iiDtpG~~~f-----------~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~-~~---~~~i  147 (435)
T 1jny_A           83 KYFFTIIDAPGHRDF-----------VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MG---LDQL  147 (435)
T ss_dssp             SCEEEECCCSSSTTH-----------HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TT---CTTC
T ss_pred             CeEEEEEECCCcHHH-----------HHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH-cC---CCeE
Confidence            789999999998753           22233466789999999999754       22233344433333 11   1478


Q ss_pred             EEEEecCCCCCCC--cccHHHHhhhcCCchHHHHHHHcC
Q 036158          141 IVVFTGGDELEDN--DETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus       141 ~vv~~k~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      ++++||+|+....  +..++....+     +++++...+
T Consensus       148 ivviNK~Dl~~~~~~~~~~~~~~~~-----i~~~~~~~~  181 (435)
T 1jny_A          148 IVAVNKMDLTEPPYDEKRYKEIVDQ-----VSKFMRSYG  181 (435)
T ss_dssp             EEEEECGGGSSSTTCHHHHHHHHHH-----HHHHHHHTT
T ss_pred             EEEEEcccCCCccccHHHHHHHHHH-----HHHHHHHcC
Confidence            9999999987631  2233444444     677777766

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.62  E-value=1.1e-14  Score=133.51  Aligned_cols=167  Identities=19%  Similarity=0.202  Sum_probs=105.9

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhCCcc------c------c--ccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCC
Q 036158           15 PSNGERNLVLVGRTGNGKSATANSILGKRA------F------K--SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF   80 (225)
Q Consensus        15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~------~------~--~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~   80 (225)
                      ...+.++|+++|++++|||||+++|++...      +      +  ......+.|.......+.. .+..+.||||||+.
T Consensus       292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~-~~~kI~IIDTPGHe  370 (1289)
T 3avx_A          292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT-PTRHYAHVDCPGHA  370 (1289)
T ss_dssp             CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC-SSCEEEEEECCCHH
T ss_pred             ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcC-CCEEEEEEECCChH
Confidence            346679999999999999999999986410      0      0  0011234444443334444 66899999999965


Q ss_pred             CCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccccc-EEEEEecCCCCCCCcccHHH
Q 036158           81 DSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDY-MIVVFTGGDELEDNDETLED  159 (225)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~vv~~k~D~~~~~~~~~~~  159 (225)
                      +           +...+......+|++|+|+|++++....+.+.+..+...     ..| +++++||+|+.... ..++.
T Consensus       371 d-----------F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l-----gIP~IIVVINKiDLv~d~-e~le~  433 (1289)
T 3avx_A          371 D-----------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV-----GVPYIIVFLNKCDMVDDE-ELLEL  433 (1289)
T ss_dssp             H-----------HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH-----TCSCEEEEEECCTTCCCH-HHHHH
T ss_pred             H-----------HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc-----CCCeEEEEEeecccccch-hhHHH
Confidence            3           334444567789999999999877666676766655542     245 78999999986521 22333


Q ss_pred             HhhhcCCchHHHHHHHcCC-----cEEEeeCCCccccccH--------HHHHHHHHHHHHHHHH
Q 036158          160 YLGRECPKPLKEILQLCDN-----RCVLFDNKTKDTAKRT--------EQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--------~~v~~l~~~i~~~~~~  210 (225)
                      ...+     ++++++..+.     +++.      .|+.++        .++.+|++.|.+.++.
T Consensus       434 i~eE-----i~elLk~~G~~~~~vp~Ip------vSAktG~ng~~~w~eGI~eLleaL~~~Ip~  486 (1289)
T 3avx_A          434 VEME-----VRELLSQYDFPGDDTPIVR------GSALKALEGDAEWEAKILELAGFLDSYIPE  486 (1289)
T ss_dssp             HHHH-----HHHHHHHTTSCTTTCCEEE------CCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred             HHHH-----HHHHHHhccccccceeEEE------EEeccCCCCCccccccchhhHhHHhhhcCC
Confidence            3333     5667766652     2332      333333        5789999999876653

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.61  E-value=7.8e-15  Score=130.55  Aligned_cols=121  Identities=20%  Similarity=0.246  Sum_probs=81.9

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhCCccccc----------------cCCCCCceeEEEEEEEEeeCCceEEEEeCCC
Q 036158           15 PSNGERNLVLVGRTGNGKSATANSILGKRAFKS----------------KAGSSGVTKTCEMQRTMLKDGQVVNVIDTPG   78 (225)
Q Consensus        15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG   78 (225)
                      +.....+|+|+|++|+|||||+|+|+.......                .....+.|.......+.+ .+..++||||||
T Consensus         8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-~~~~i~liDTPG   86 (691)
T 1dar_A            8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDTPG   86 (691)
T ss_dssp             CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-TTEEEEEECCCS
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-CCeEEEEEECcC
Confidence            345679999999999999999999983211000                000234555566666777 788999999999


Q ss_pred             CCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158           79 LFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED  152 (225)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~  152 (225)
                      +.++.       ..+...+    ..+|++|+|+|+.+.....+...+..+...     ..|+++++||+|....
T Consensus        87 ~~df~-------~~~~~~l----~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           87 HVDFT-------IEVERSM----RVLDGAIVVFDSSQGVEPQSETVWRQAEKY-----KVPRIAFANKMDKTGA  144 (691)
T ss_dssp             STTCH-------HHHHHHH----HHCSEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCEEEEEECTTSTTC
T ss_pred             ccchH-------HHHHHHH----HHCCEEEEEEECCCCcchhhHHHHHHHHHc-----CCCEEEEEECCCcccC
Confidence            97652       2223333    345999999999877777777766665542     3799999999998754

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.61  E-value=1.5e-15  Score=129.29  Aligned_cols=140  Identities=16%  Similarity=0.226  Sum_probs=90.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCc-cccc-------------c---------------CCCCCceeEEEEEEEEeeC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKR-AFKS-------------K---------------AGSSGVTKTCEMQRTMLKD   67 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~-~~~~-------------~---------------~~~~~~t~~~~~~~~~~~~   67 (225)
                      .+.++|+++|++|+|||||+|+|++.. .+..             +               ....+.|.......+.. .
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-~   83 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-P   83 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-S
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-C
Confidence            456899999999999999999998642 1000             0               00134566655556666 6


Q ss_pred             CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCH-------HHHHHHHHHHHHhcccccccE
Q 036158           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSE-------EEGAAIHILESLFGKKISDYM  140 (225)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~  140 (225)
                      +..+.||||||+.++           ...+......+|++|+|+|+.++...       .+.+.+..+.. .+   .+++
T Consensus        84 ~~~~~iiDtPGh~~f-----------~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-~~---v~~i  148 (458)
T 1f60_A           84 KYQVTVIDAPGHRDF-----------IKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-LG---VRQL  148 (458)
T ss_dssp             SEEEEEEECCCCTTH-----------HHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-TT---CCEE
T ss_pred             CceEEEEECCCcHHH-----------HHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-cC---CCeE
Confidence            789999999997632           23334567789999999999744322       33333333332 11   1358


Q ss_pred             EEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158          141 IVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus       141 ~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      ++|+||+|+....+..++....+     +++++...+
T Consensus       149 ivviNK~Dl~~~~~~~~~~i~~~-----~~~~l~~~g  180 (458)
T 1f60_A          149 IVAVNKMDSVKWDESRFQEIVKE-----TSNFIKKVG  180 (458)
T ss_dssp             EEEEECGGGGTTCHHHHHHHHHH-----HHHHHHHHT
T ss_pred             EEEEEccccccCCHHHHHHHHHH-----HHHHHHHcC
Confidence            99999999874332344444444     666666665

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.59  E-value=1.7e-16  Score=138.81  Aligned_cols=169  Identities=16%  Similarity=0.200  Sum_probs=88.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccc-----------------------------cCCCCCceeEEEEEEEEee
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKS-----------------------------KAGSSGVTKTCEMQRTMLK   66 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~   66 (225)
                      ..+.++|+++|++|+|||||+|+|++......                             ....+++|.......+.+ 
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-  252 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-  252 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-
Confidence            35678999999999999999999974321110                             011345677777777777 


Q ss_pred             CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-----C--CHHHHHHHHHHHHHhccccccc
Q 036158           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNR-----F--SEEEGAAIHILESLFGKKISDY  139 (225)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~  139 (225)
                      .+..+.||||||+.++..           .+......+|++|+|+|+..+     +  .....+.+..+... +   .++
T Consensus       253 ~~~~i~iiDTPGh~~f~~-----------~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l-g---ip~  317 (592)
T 3mca_A          253 DKKIYEIGDAPGHRDFIS-----------GMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL-G---ISE  317 (592)
T ss_dssp             ------CCEEESSSEEEE-----------ECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS-S---CCC
T ss_pred             CCeEEEEEECCChHHHHH-----------HHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc-C---CCe
Confidence            678999999999876521           112234578999999999753     2  45555666555542 2   135


Q ss_pred             EEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH-HHcCCc---EEEeeCCCccccccHHHHH--------------HHH
Q 036158          140 MIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL-QLCDNR---CVLFDNKTKDTAKRTEQVG--------------KLL  201 (225)
Q Consensus       140 ~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~v~--------------~l~  201 (225)
                      +++|+||+|+.......++....+     +.+++ ...+..   +.+    .+.|+.++.++.              .|+
T Consensus       318 iIvviNKiDl~~~~~~~~~~i~~e-----l~~~l~~~~g~~~~~~~i----i~iSA~~G~gI~e~~~~~~~~w~~g~~Ll  388 (592)
T 3mca_A          318 IVVSVNKLDLMSWSEDRFQEIKNI-----VSDFLIKMVGFKTSNVHF----VPISAISGTNLIQKDSSDLYKWYKGPTLL  388 (592)
T ss_dssp             EEEEEECGGGGTTCHHHHHHHHHH-----HHHHHTTTSCCCGGGEEE----EEECSSSCSSSCSCCCCGGGGTCCSCCHH
T ss_pred             EEEEEeccccccccHHHHHHHHHH-----HHHHHHHhhCCCccceEE----EEEecccCcccccccccccccccchHHHH
Confidence            899999999876433344444444     56666 444541   111    234555666766              788


Q ss_pred             HHHHHHHH
Q 036158          202 SLVNSVIV  209 (225)
Q Consensus       202 ~~i~~~~~  209 (225)
                      +.|..+..
T Consensus       389 e~l~~~~p  396 (592)
T 3mca_A          389 SALDQLVP  396 (592)
T ss_dssp             HHHHTSCC
T ss_pred             HHHHhhcc
Confidence            88876544

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.59  E-value=1.3e-14  Score=126.00  Aligned_cols=166  Identities=15%  Similarity=0.161  Sum_probs=95.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEE----EEEee---CCceEEEEeCCCCCCCCCCcHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQ----RTMLK---DGQVVNVIDTPGLFDSSADSEF   88 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~----~~~~~---~~~~~~liDtPG~~~~~~~~~~   88 (225)
                      ....++|+++|.+|+|||||+|++++...........+.+......    .+...   .+..+.+|||||..........
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~  117 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF  117 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence            4567999999999999999999999876422111111111111000    11121   2468999999997655332221


Q ss_pred             HHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCch
Q 036158           89 VSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKP  168 (225)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~  168 (225)
                                 ....+|++|+|+|+.. . .....++..+.+...   ..|+++|.||+|.........++         
T Consensus       118 -----------~l~~~d~ii~V~D~s~-~-~~~~~~~~~l~~~~~---~~pvilV~NK~Dl~~~~~v~~~~---------  172 (535)
T 3dpu_A          118 -----------FMTRSSVYMLLLDSRT-D-SNKHYWLRHIEKYGG---KSPVIVVMNKIDENPSYNIEQKK---------  172 (535)
T ss_dssp             -----------HHHSSEEEEEEECGGG-G-GGHHHHHHHHHHHSS---SCCEEEEECCTTTCTTCCCCHHH---------
T ss_pred             -----------HccCCcEEEEEEeCCC-c-hhHHHHHHHHHHhCC---CCCEEEEEECCCcccccccCHHH---------
Confidence                       1224799999999873 2 333455666665432   37999999999987543212211         


Q ss_pred             HHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          169 LKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                      +++.....+.++      ...||.++.++++|++.|.+.+.+..
T Consensus       173 ~~~~~~~~~~~~------~~vSA~~g~gi~eL~~~l~~~~~~~~  210 (535)
T 3dpu_A          173 INERFPAIENRF------HRISCKNGDGVESIAKSLKSAVLHPD  210 (535)
T ss_dssp             HHHHCGGGTTCE------EECCC-----CTTHHHHHHHHHTCTT
T ss_pred             HHHHHHhcCCce------EEEecCcccCHHHHHHHHHHHHhccc
Confidence            333444444333      24466778999999999998887653

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.59  E-value=7.9e-14  Score=105.07  Aligned_cols=160  Identities=16%  Similarity=0.147  Sum_probs=95.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ..++|+|+|++|+|||||+|.|.+......  ..+..+.......+.+ ++.  .+.+|||||.........        
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~--~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~~--------   96 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLE--SKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAITS--------   96 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCCCCS--CCCCCSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCCCH--------
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCccceEEEEEEEEE-CCEEEEEEEEECCCCcchhhhhH--------
Confidence            358999999999999999999998764322  2233333344445555 555  456799999865432111        


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                         .....++++++|+|..+..+... ..++..+....  ....|+++++||+|+........+         ..+.+..
T Consensus        97 ---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~~~~~~~~~---------~a~~l~~  162 (191)
T 1oix_A           97 ---AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLRHLRAVPTD---------EARAFAE  162 (191)
T ss_dssp             ---HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECGGGGGGCCSCHH---------HHHHHHH
T ss_pred             ---HHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECcccccccccCHH---------HHHHHHH
Confidence               22346689999999863322111 12233333321  124789999999997543211111         1344555


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                      ..+.  ..++    .|+..+.+++++++.|.+.+
T Consensus       163 ~~~~--~~ld----~Sald~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          163 KNGL--SFIE----TSALDSTNVEAAFQTILTEI  190 (191)
T ss_dssp             HTTC--EEEE----CCTTTCTTHHHHHHHHHHHH
T ss_pred             HcCC--EEEE----EeCCCCCCHHHHHHHHHHHh
Confidence            5443  3333    45566689999999887643

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.58  E-value=2.1e-14  Score=127.80  Aligned_cols=120  Identities=21%  Similarity=0.284  Sum_probs=82.8

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccc----------c------CCCCCceeEEEEEEEEeeCCceEEEEeCCCC
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKS----------K------AGSSGVTKTCEMQRTMLKDGQVVNVIDTPGL   79 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~----------~------~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~   79 (225)
                      .....+|+|+|++|+|||||+|+|++......          .      ....+.|.......+.+ .+..++||||||+
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~   85 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-EGHRVNIIDTPGH   85 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-TTEEEEEECCCCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-CCeeEEEEECcCC
Confidence            45678999999999999999999984221100          0      00234455555566777 7889999999999


Q ss_pred             CCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158           80 FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED  152 (225)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~  152 (225)
                      .++.       ..+..++    ..+|++|+|+|+.++.+..+...+..+...     ..|+++|+||+|....
T Consensus        86 ~df~-------~~~~~~l----~~aD~~llVvDa~~g~~~~~~~~~~~~~~~-----~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           86 VDFT-------VEVERSL----RVLDGAVTVLDAQSGVEPQTETVWRQATTY-----GVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             SSCC-------HHHHHHH----HHCSEEEEEEETTTBSCHHHHHHHHHHHHT-----TCCEEEEEECTTSTTC
T ss_pred             cchH-------HHHHHHH----HHCCEEEEEECCCCCCcHHHHHHHHHHHHc-----CCCEEEEEECCCcccc
Confidence            8753       1222232    236999999999877887777777666542     3799999999998764

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.58  E-value=2e-15  Score=131.01  Aligned_cols=140  Identities=17%  Similarity=0.282  Sum_probs=80.8

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCcccc--ccCCCCCceeEEEEE--------------------------------
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFK--SKAGSSGVTKTCEMQ--------------------------------   61 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~--~~~~~~~~t~~~~~~--------------------------------   61 (225)
                      ....++|+|+|.+|+|||||+|+|++.....  ... .+.++......                                
T Consensus        62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~-~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~  140 (550)
T 2qpt_A           62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGP-EPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL  140 (550)
T ss_dssp             TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCS-SCCCCSEEEEECCSSSEEECCC------------------CCC
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCC-CCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence            3467899999999999999999999987531  211 22222211110                                


Q ss_pred             ----EEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhcc
Q 036158           62 ----RTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRN-RFSEEEGAAIHILESLFGK  134 (225)
Q Consensus        62 ----~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~-~~~~~~~~~~~~l~~~~~~  134 (225)
                          .+.++..  ..+.||||||+.+...........+...+..+...+|++|+|+|+.. .....+..+++.+..    
T Consensus       141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----  216 (550)
T 2qpt_A          141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----  216 (550)
T ss_dssp             TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----
T ss_pred             ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----
Confidence                0111000  36899999999853211000000011222223346699999999975 356666666655543    


Q ss_pred             cccccEEEEEecCCCCCCCcccHHHHhhh
Q 036158          135 KISDYMIVVFTGGDELEDNDETLEDYLGR  163 (225)
Q Consensus       135 ~~~~~~~vv~~k~D~~~~~~~~~~~~~~~  163 (225)
                       ...|+++|+||+|.....  .+.+....
T Consensus       217 -~~~pvilVlNK~Dl~~~~--el~~~~~~  242 (550)
T 2qpt_A          217 -HEDKIRVVLNKADMVETQ--QLMRVYGA  242 (550)
T ss_dssp             -CGGGEEEEEECGGGSCHH--HHHHHHHH
T ss_pred             -cCCCEEEEEECCCccCHH--HHHHHHHH
Confidence             236899999999987542  44444333

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.58  E-value=1.3e-14  Score=125.23  Aligned_cols=119  Identities=15%  Similarity=0.203  Sum_probs=80.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccc--------------------cCCCCCceeEEEEEEEEeeCCceEEEEeC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKS--------------------KAGSSGVTKTCEMQRTMLKDGQVVNVIDT   76 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~--------------------~~~~~~~t~~~~~~~~~~~~~~~~~liDt   76 (225)
                      ....+|+++|++|+|||||+|+|++......                    .....+.|.......+.+ .+..++||||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDT   89 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDT   89 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEEC
Confidence            4568999999999999999999986421110                    001223333334445666 7889999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158           77 PGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED  152 (225)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~  152 (225)
                      ||+.++.       ..+.    .+...+|++|+|+|+.++........+..+..     ...|+++++||+|....
T Consensus        90 PG~~df~-------~~~~----~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~-----~~ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           90 PGHEDFS-------EDTY----RTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRL-----RDTPILTFMNKLDRDIR  149 (529)
T ss_dssp             CCSTTCC-------HHHH----HGGGGCSEEEEEEETTTCSCHHHHHHHHHHTT-----TTCCEEEEEECTTSCCS
T ss_pred             CCChhHH-------HHHH----HHHHHCCEEEEEEeCCccchHHHHHHHHHHHH-----cCCCEEEEEcCcCCccc
Confidence            9998763       1122    24457799999999987776666555554432     13789999999998655

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.58  E-value=3.6e-15  Score=127.27  Aligned_cols=138  Identities=17%  Similarity=0.178  Sum_probs=77.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcc-cc----------------------------ccCCCCCceeEEEEEEEEeeC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRA-FK----------------------------SKAGSSGVTKTCEMQRTMLKD   67 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~-~~----------------------------~~~~~~~~t~~~~~~~~~~~~   67 (225)
                      .+.++|+++|+.++|||||+++|+.... +.                            ......+.|.......+.+ +
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-~  119 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-E  119 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-S
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec-C
Confidence            4568999999999999999999974221 00                            0001235566666556676 6


Q ss_pred             CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCC-------HHHHHHHHHHHHHhccccccc-
Q 036158           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFS-------EEEGAAIHILESLFGKKISDY-  139 (225)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~-  139 (225)
                      +..+.||||||+.++.           ..+......+|++|+|+|+.++..       ...++.+..+.. .    ..| 
T Consensus       120 ~~~~~iiDtPGh~~f~-----------~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~----~vp~  183 (467)
T 1r5b_A          120 HRRFSLLDAPGHKGYV-----------TNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-Q----GINH  183 (467)
T ss_dssp             SEEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-T----TCSS
T ss_pred             CeEEEEEECCCcHHHH-----------HHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-c----CCCE
Confidence            7899999999987542           222334568899999999975421       233444443332 1    244 


Q ss_pred             EEEEEecCCCCCCC--cccHHHHhhhcCCchHHHHHHHc
Q 036158          140 MIVVFTGGDELEDN--DETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus       140 ~~vv~~k~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      +++++||+|+....  ...++....+     +++++...
T Consensus       184 iivviNK~Dl~~~~~~~~~~~~i~~e-----~~~~l~~~  217 (467)
T 1r5b_A          184 LVVVINKMDEPSVQWSEERYKECVDK-----LSMFLRRV  217 (467)
T ss_dssp             EEEEEECTTSTTCSSCHHHHHHHHHH-----HHHHHHHH
T ss_pred             EEEEEECccCCCccccHHHHHHHHHH-----HHHHHHHh
Confidence            99999999986422  2233444444     56666555

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.55  E-value=4.2e-14  Score=118.53  Aligned_cols=169  Identities=17%  Similarity=0.253  Sum_probs=82.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCC----CCceeEEEEEEEEee-CC--ceEEEEeCCCCCCCCCCcHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGS----SGVTKTCEMQRTMLK-DG--QVVNVIDTPGLFDSSADSEFV   89 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~----~~~t~~~~~~~~~~~-~~--~~~~liDtPG~~~~~~~~~~~   89 (225)
                      .-.++|+|+|++|+|||||+|.|+|..........    ...|.......+.+. .+  ..++++||||++..... ...
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~-~~~  107 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN-SNC  107 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC------------
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccc-hhh
Confidence            44578999999999999999999987653222111    012222222222221 12  26899999999865321 111


Q ss_pred             HHHHH----HHHh-----------hcC--CCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158           90 SKEIV----KCIG-----------MTK--DGIHAVLVVFSVR-NRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELE  151 (225)
Q Consensus        90 ~~~~~----~~~~-----------~~~--~~~~~ii~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~  151 (225)
                      +..+.    ..+.           ...  +.+|+++|++... ..++..+..+++.+..      ..++++|+||+|...
T Consensus       108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~------~v~iIlVinK~Dll~  181 (418)
T 2qag_C          108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLT  181 (418)
T ss_dssp             CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT------TSEEEEEEESTTSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc------cCcEEEEEEcccCcc
Confidence            11111    1111           112  3456677776654 4677777656655532      379999999999875


Q ss_pred             CCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHH
Q 036158          152 DNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVN  205 (225)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~  205 (225)
                      ..  .+..+..+     +.+.+...+.+++.++      +....+++++...+.
T Consensus       182 ~~--ev~~~k~~-----i~~~~~~~~i~~~~~s------a~~~~~v~~~~~~l~  222 (418)
T 2qag_C          182 PE--ECQQFKKQ-----IMKEIQEHKIKIYEFP------ETDDEEENKLVKKIK  222 (418)
T ss_dssp             HH--HHHHHHHH-----HHHHHHHHTCCCCCCC---------------------
T ss_pred             HH--HHHHHHHH-----HHHHHHHcCCeEEeCC------CCCCcCHHHHHHHHH
Confidence            43  45554444     6666667676654443      233455555554443

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.54  E-value=8.4e-14  Score=116.29  Aligned_cols=90  Identities=16%  Similarity=0.087  Sum_probs=46.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee--------------------C---CceEEEEeC
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK--------------------D---GQVVNVIDT   76 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--------------------~---~~~~~liDt   76 (225)
                      ++|+++|.+|+|||||+|+|++.. ... ...+++|.........+.                    +   ...+.||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~-~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt   78 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVD-VEI-ANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV   78 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC-Ccc-cCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence            479999999999999999999887 222 234455554443322110                    1   247999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCC
Q 036158           77 PGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRN  115 (225)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~  115 (225)
                      ||+........    .+..........+|++++|+|+.+
T Consensus        79 pG~~~~a~~~~----~l~~~~l~~i~~aD~il~VvD~~~  113 (397)
T 1wxq_A           79 AGLVPGAHEGR----GLGNKFLDDLRMASALIHVVDATG  113 (397)
T ss_dssp             C-------------------CCCSSTTCSEEEEEEETTC
T ss_pred             CCcccchhhhh----hHHHHHHHHHhcCCEEEEEEeccc
Confidence            99975422112    122222345678999999999964

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.54  E-value=1.1e-13  Score=123.34  Aligned_cols=120  Identities=19%  Similarity=0.261  Sum_probs=82.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCcccccc----------------CCCCCceeEEEEEEEEeeCC-------ceEE
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSK----------------AGSSGVTKTCEMQRTMLKDG-------QVVN   72 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~-------~~~~   72 (225)
                      .....+|+|+|+.|+|||||+++|+........                ....+.|.......+.+ .+       ..++
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~~~~~~~~i~   85 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW-SGMAKQYEPHRIN   85 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEE-CCccccCCceeEE
Confidence            456789999999999999999999753210000                00234566555566666 44       7899


Q ss_pred             EEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158           73 VIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED  152 (225)
Q Consensus        73 liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~  152 (225)
                      ||||||+.++.       ..+..    +...+|++|+|+|+.+.........+..+...     ..|+++++||+|....
T Consensus        86 liDTPG~~df~-------~~~~~----~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~-----~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           86 IIDTPGHVDFT-------IEVER----SMRVLDGAVMVYCAVGGVQPQSETVWRQANKY-----KVPRIAFVNKMDRMGA  149 (704)
T ss_pred             EEeCCCccchH-------HHHHH----HHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHc-----CCCEEEEEeCCCcccc
Confidence            99999998652       12222    33456999999999877666666666554432     3789999999997654

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.54  E-value=1.2e-13  Score=122.59  Aligned_cols=117  Identities=26%  Similarity=0.299  Sum_probs=83.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCC----------------CCCceeEEEEEEEEeeCCceEEEEeCCCCC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAG----------------SSGVTKTCEMQRTMLKDGQVVNVIDTPGLF   80 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~   80 (225)
                      ....+|+++|++|+|||||+++|++.........                ..+.|...+...+.+ .+..++||||||+.
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~~nliDTpG~~   85 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGYG   85 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCSG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee-CCEEEEEEeCCCcc
Confidence            4568999999999999999999984332100000                123455555566666 77899999999987


Q ss_pred             CCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCC
Q 036158           81 DSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDEL  150 (225)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~  150 (225)
                      ++.       ..+...+    ..+|++++|+|+.+.+.......+..+...     ..|+++++||+|..
T Consensus        86 ~f~-------~~~~~~l----~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~-----~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           86 DFV-------GEIRGAL----EAADAALVAVSAEAGVQVGTERAWTVAERL-----GLPRMVVVTKLDKG  139 (665)
T ss_dssp             GGH-------HHHHHHH----HHCSEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCEEEEEECGGGC
T ss_pred             chH-------HHHHHHH----hhcCcEEEEEcCCcccchhHHHHHHHHHHc-----cCCEEEEecCCchh
Confidence            541       2233333    345999999999878888777777766652     37899999999986

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.53  E-value=5.2e-14  Score=113.82  Aligned_cols=121  Identities=15%  Similarity=0.116  Sum_probs=75.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT  100 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (225)
                      +|+++|.+|+||||+++.+.+...... ......|.......+  .....+.||||||...+..+.  +      ....+
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~-~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~--l------~~~~y   69 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLD-TLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPS--Y------DSERL   69 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGG-GTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCS--H------HHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCc-cceecCeeeeeeEEE--ccEEEEEEEECCCchhccchh--h------hhhhh
Confidence            589999999999999998876532111 112233333333332  234689999999998763211  0      01234


Q ss_pred             CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158          101 KDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED  152 (225)
Q Consensus       101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~  152 (225)
                      +++++++|+|+|+++++.....++.+++.+........|++++.||+|+...
T Consensus        70 yr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~  121 (331)
T 3r7w_B           70 FKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE  121 (331)
T ss_dssp             HTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred             ccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence            6688999999999866333333333344432222234799999999998754

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.50  E-value=1.2e-13  Score=115.56  Aligned_cols=152  Identities=16%  Similarity=0.218  Sum_probs=86.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCC--CCCceeEEEEEEEEeeCC---ceEEEEeCCCCCCCCCCcHH----
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAG--SSGVTKTCEMQRTMLKDG---QVVNVIDTPGLFDSSADSEF----   88 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~---~~~~liDtPG~~~~~~~~~~----   88 (225)
                      ..++++|+|++|+|||||+|.|+|.........  .++.+..  ...+.+...   ..++++|+||++... ....    
T Consensus        41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~--~i~~v~Q~~~l~~~ltv~D~~~~g~~~-~~~~~~~~  117 (427)
T 2qag_B           41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQ--SNTYDLQESNVRLKLTIVSTVGFGDQI-NKEDSYKP  117 (427)
T ss_dssp             CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEE--EEEEEEEC--CEEEEEEEEEECCCC-C-CHHHHSHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEe--eEEEEeecCccccccchhhhhhhhhcc-ccchhhhH
Confidence            345699999999999999999999864322111  1222322  222222122   278999999998642 2211    


Q ss_pred             ----HHHHHHHHHhhc-----------CCCccE-EEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158           89 ----VSKEIVKCIGMT-----------KDGIHA-VLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED  152 (225)
Q Consensus        89 ----~~~~~~~~~~~~-----------~~~~~~-ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~  152 (225)
                          +...+..++...           ...+|+ ++|+.|...+++..+.++++.|..      ..|+++|+||+|.+.+
T Consensus       118 i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~~------~~~vI~Vi~KtD~Lt~  191 (427)
T 2qag_B          118 IVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDS------KVNIIPIIAKADAISK  191 (427)
T ss_dssp             HHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTCS------CSEEEEEESCGGGSCH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHhh------CCCEEEEEcchhccch
Confidence                112222222221           112455 556667777888888777766642      3799999999998865


Q ss_pred             CcccHHHHhhhcCCchHHHHHHHcCCcEEEeeC
Q 036158          153 NDETLEDYLGRECPKPLKEILQLCDNRCVLFDN  185 (225)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (225)
                      .  ....+...     +++.+...|..++.|+.
T Consensus       192 ~--E~~~l~~~-----I~~~L~~~gi~I~~is~  217 (427)
T 2qag_B          192 S--ELTKFKIK-----ITSELVSNGVQIYQFPT  217 (427)
T ss_dssp             H--HHHHHHHH-----HHHHHBTTBCCCCCCC-
T ss_pred             H--HHHHHHHH-----HHHHHHHcCCcEEecCC
Confidence            3  55555554     56556666666666653

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.50  E-value=3.9e-13  Score=108.43  Aligned_cols=174  Identities=16%  Similarity=0.152  Sum_probs=80.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCC-----CCceeEEEEEEEEee---CCceEEEEeCCCCCCCCCC---
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGS-----SGVTKTCEMQRTMLK---DGQVVNVIDTPGLFDSSAD---   85 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~-----~~~t~~~~~~~~~~~---~~~~~~liDtPG~~~~~~~---   85 (225)
                      .-.++|+|+|++|+|||||+|+|++...++.....     ...|.......+...   ....+.+|||||+++....   
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            44589999999999999999999987433322100     011221222222221   1247899999999643211   


Q ss_pred             cHHHHHHH----HHHHhh---------cCCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158           86 SEFVSKEI----VKCIGM---------TKDGIHAVLVVFSVRN-RFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELE  151 (225)
Q Consensus        86 ~~~~~~~~----~~~~~~---------~~~~~~~ii~v~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~  151 (225)
                      ...+...+    ...+..         ....+++++|+.+... .++..+.+++   +... .  ..++++|+||.|...
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l---~~l~-~--~~~iilV~~K~Dl~~  169 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFM---KAIH-N--KVNIVPVIAKADTLT  169 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHH---HHHT-T--TSCEEEEECCGGGSC
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHH---HHHH-h--cCCEEEEEEeCCCCC
Confidence            01112111    111111         1123566777666432 4777664433   3332 2  268999999999865


Q ss_pred             CCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          152 DNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      ..  ......++     ..+.++..+..+      ...|+.++ ++++++..+.+.+.+
T Consensus       170 ~~--e~~~~~~~-----~~~~~~~~~~~~------~e~Sa~~~-~v~e~f~~l~~~i~~  214 (301)
T 2qnr_A          170 LK--ERERLKKR-----ILDEIEEHNIKI------YHLPDAES-DEDEDFKEQTRLLKA  214 (301)
T ss_dssp             HH--HHHHHHHH-----HHHHHHHTTCCC------CCCC----------CHHHHHHHHT
T ss_pred             HH--HHHHHHHH-----HHHHHHHcCCeE------EecCCccc-cccHHHHHHHHHhhc
Confidence            32  23323233     455666655432      34456677 889988888776654

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.49  E-value=1.8e-14  Score=127.16  Aligned_cols=118  Identities=18%  Similarity=0.249  Sum_probs=88.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccC----------------CCCCceeEEEEEEEEeeCCceEEEEeCCCCCCC
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKA----------------GSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDS   82 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (225)
                      ..||+|+|+.++|||||..+|+.........                ...+.|.......+.| ++..++||||||+.|+
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPGH~DF   80 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-ENTKVNIIDTPGHMDF   80 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC-SSCBCCCEECCCSSST
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE-CCEEEEEEECCCcHHH
Confidence            4689999999999999999987332111100                0124566666677788 8889999999999988


Q ss_pred             CCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158           83 SADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN  153 (225)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~  153 (225)
                      .       .++.+.    ..-+|++|+|+|+.++....+...++.+.+.     ..|.++++||+|....+
T Consensus        81 ~-------~Ev~ra----L~~~DgavlVVDa~~GV~~qT~~v~~~a~~~-----~lp~i~~INKmDr~~a~  135 (638)
T 3j25_A           81 L-------AEVYRS----LSVLDGAILLISAKDGVQAQTRILFHALRKM-----GIPTIFFINKIDQNGID  135 (638)
T ss_dssp             H-------HHHHHH----HTTCSEEECCEESSCTTCSHHHHHHHHHHHH-----TCSCEECCEECCSSSCC
T ss_pred             H-------HHHHHH----HHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc-----CCCeEEEEeccccccCC
Confidence            3       233333    3456999999999889988888888887775     36889999999987554

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.45  E-value=1.7e-13  Score=108.86  Aligned_cols=152  Identities=18%  Similarity=0.242  Sum_probs=89.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCC-----CCceeEEEEEEEEeeC---CceEEEEeCCCCCCCCCCc---H
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGS-----SGVTKTCEMQRTMLKD---GQVVNVIDTPGLFDSSADS---E   87 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~-----~~~t~~~~~~~~~~~~---~~~~~liDtPG~~~~~~~~---~   87 (225)
                      .++++|+|++|+|||||+|.|+|......+...     ...+.......+....   ...++++|+||++......   .
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            378999999999999999999986543222110     0111111111221111   1278999999998643221   1


Q ss_pred             HHHHH----HHHHHhh----------cCCCccEEEEEEeC-CCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158           88 FVSKE----IVKCIGM----------TKDGIHAVLVVFSV-RNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED  152 (225)
Q Consensus        88 ~~~~~----~~~~~~~----------~~~~~~~ii~v~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~  152 (225)
                      .+...    +......          ..-.+++.++++|. +.+++..+.++++.+.+.      .++++|++|+|.+..
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~lt~  155 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTMTL  155 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGSCH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccCCH
Confidence            11111    1111111          12346888888875 468898888777777652      799999999998865


Q ss_pred             CcccHHHHhhhcCCchHHHHHHHcCCcEEEe
Q 036158          153 NDETLEDYLGRECPKPLKEILQLCDNRCVLF  183 (225)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (225)
                      .  ....+...     +++.+...+..++.+
T Consensus       156 ~--e~~~~k~~-----i~~~l~~~~i~i~~~  179 (270)
T 3sop_A          156 E--EKSEFKQR-----VRKELEVNGIEFYPQ  179 (270)
T ss_dssp             H--HHHHHHHH-----HHHHHHHTTCCCSSC
T ss_pred             H--HHHHHHHH-----HHHHHHHcCccccCC
Confidence            3  55555555     677777777765543

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.45  E-value=8.7e-13  Score=117.88  Aligned_cols=129  Identities=22%  Similarity=0.246  Sum_probs=89.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCcccc----------------ccCCCCCceeEEEEEEEEeeC------CceEEE
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFK----------------SKAGSSGVTKTCEMQRTMLKD------GQVVNV   73 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~----------------~~~~~~~~t~~~~~~~~~~~~------~~~~~l   73 (225)
                      .....+|+|+|+.++|||||..+|+......                ......+.|.......+.|..      +..++|
T Consensus        10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl   89 (709)
T 4fn5_A           10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV   89 (709)
T ss_dssp             GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred             hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence            3556899999999999999999887332110                011234566666666777732      468999


Q ss_pred             EeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158           74 IDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN  153 (225)
Q Consensus        74 iDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~  153 (225)
                      |||||+.|+.       .++.+++..+    |++|+|+|+..+....+...++...+.     ..|.++++||+|.... 
T Consensus        90 IDTPGHvDF~-------~Ev~~aLr~~----DgavlvVDaveGV~~qT~~v~~~a~~~-----~lp~i~~iNKiDr~~a-  152 (709)
T 4fn5_A           90 IDTPGHVDFT-------IEVERSLRVL----DGAVVVFCGTSGVEPQSETVWRQANKY-----GVPRIVYVNKMDRQGA-  152 (709)
T ss_dssp             ECCCSCTTCH-------HHHHHHHHHC----SEEEEEEETTTCSCHHHHHHHHHHHHH-----TCCEEEEEECSSSTTC-
T ss_pred             EeCCCCcccH-------HHHHHHHHHh----CeEEEEEECCCCCchhHHHHHHHHHHc-----CCCeEEEEccccccCc-
Confidence            9999999983       3444444444    999999999889999888888877664     3799999999998655 


Q ss_pred             cccHHHHhhh
Q 036158          154 DETLEDYLGR  163 (225)
Q Consensus       154 ~~~~~~~~~~  163 (225)
                        .+....++
T Consensus       153 --~~~~~~~e  160 (709)
T 4fn5_A          153 --NFLRVVEQ  160 (709)
T ss_dssp             --CHHHHHHH
T ss_pred             --cHHHHHHH
Confidence              44544444

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.44  E-value=1.6e-13  Score=108.23  Aligned_cols=89  Identities=15%  Similarity=0.100  Sum_probs=52.2

Q ss_pred             CccEEEEEEeCCCC--CCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc-CC
Q 036158          103 GIHAVLVVFSVRNR--FSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC-DN  178 (225)
Q Consensus       103 ~~~~ii~v~~~~~~--~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  178 (225)
                      ++|++|+|+|++++  .+-.. ..++..+.+... ....|+++|.||+|+....  .+    .+     .+++.... +.
T Consensus       162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~-~~~~piilV~NK~Dl~~~~--~v----~~-----~~~~~~~~~~~  229 (255)
T 3c5h_A          162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLA-KTKKPIVVVLTKCDEGVER--YI----RD-----AHTFALSKKNL  229 (255)
T ss_dssp             ECCEEEEEEECBC----CHHHHHHHHHHHHHHHH-HTTCCEEEEEECGGGBCHH--HH----HH-----HHHHHHTSSSC
T ss_pred             cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhc-cCCCCEEEEEEcccccccH--HH----HH-----HHHHHHhcCCC
Confidence            58999999999754  34333 223334433211 1247999999999975321  12    12     33333321 22


Q ss_pred             cEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          179 RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      .+      ...||.++.+++++++.|.+.+.
T Consensus       230 ~~------~e~SAk~g~gv~elf~~l~~~l~  254 (255)
T 3c5h_A          230 QV------VETSARSNVNVDLAFSTLVQLID  254 (255)
T ss_dssp             CE------EECBTTTTBSHHHHHHHHHHHHH
T ss_pred             eE------EEEECCCCCCHHHHHHHHHHHhc
Confidence            22      23566777899999999977653

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.42  E-value=1e-13  Score=114.41  Aligned_cols=114  Identities=17%  Similarity=0.079  Sum_probs=66.2

Q ss_pred             CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 036158           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTG  146 (225)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k  146 (225)
                      .+..++||||||+...       ...       ....+|++++|++.......   +.+   ...   -...|.++|+||
T Consensus       170 ~~~~~iiiDTpGi~~~-------~~~-------~~~~aD~vl~V~d~~~~~~~---~~l---~~~---~~~~p~ivVlNK  226 (355)
T 3p32_A          170 AGFDVILIETVGVGQS-------EVA-------VANMVDTFVLLTLARTGDQL---QGI---KKG---VLELADIVVVNK  226 (355)
T ss_dssp             TTCCEEEEEECSCSSH-------HHH-------HHTTCSEEEEEEESSTTCTT---TTC---CTT---SGGGCSEEEEEC
T ss_pred             CCCCEEEEeCCCCCcH-------HHH-------HHHhCCEEEEEECCCCCccH---HHH---HHh---HhhcCCEEEEEC
Confidence            4568999999997632       111       12577999999997632111   111   110   122689999999


Q ss_pred             CCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEe-eCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          147 GDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLF-DNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       147 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      +|.....  .......+     +.+.+...+.....+ ......|+.++.++++|++.|.+++.+
T Consensus       227 ~Dl~~~~--~~~~~~~~-----l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          227 ADGEHHK--EARLAARE-----LSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             CCGGGHH--HHHHHHHH-----HHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             CCCcChh--HHHHHHHH-----HHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            9975432  33333333     444443332100000 112345677889999999999998876

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.40  E-value=5e-13  Score=109.81  Aligned_cols=90  Identities=17%  Similarity=0.135  Sum_probs=57.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC----------------ceEEEEeCCCCCCCC
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG----------------QVVNVIDTPGLFDSS   83 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~liDtPG~~~~~   83 (225)
                      ++|+++|.+|+|||||+|+|++... .. ...+++|..+....+.+++.                ..+.||||||+....
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~-~v-~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a   80 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGI-EA-ANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC-cc-cCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence            6899999999999999999998763 22 23445555554444555221                479999999998642


Q ss_pred             CCcHHHHHHHHHHHhhcCCCccEEEEEEeCCC
Q 036158           84 ADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRN  115 (225)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~  115 (225)
                      ...+.+...+..    ....+|++++|+|+.+
T Consensus        81 ~~~~gl~~~fl~----~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           81 SKGEGLGNKFLA----NIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHHGGGTCCHHH----HHHTCSEEEEEEECSC
T ss_pred             cccchHHHHHHH----HHHhcCeEEEEEecCC
Confidence            111112222222    2346799999999863

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.40  E-value=1.5e-12  Score=107.43  Aligned_cols=90  Identities=20%  Similarity=0.179  Sum_probs=58.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee--------------------CCceEEEEeCCCC
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK--------------------DGQVVNVIDTPGL   79 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--------------------~~~~~~liDtPG~   79 (225)
                      ++|+++|.+|+|||||+|+|++... .. ...+.+|..+......++                    ....+.+|||||+
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~-~v-~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl   79 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANA-LA-ANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL   79 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHT-TC-SSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC-cc-cCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence            5799999999999999999997652 11 223334444333333331                    1346999999999


Q ss_pred             CCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCC
Q 036158           80 FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRN  115 (225)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~  115 (225)
                      .......+.+...+...+    ..+|++++|+|+.+
T Consensus        80 ~~~a~~~~~lg~~fl~~i----r~ad~ii~VvD~~~  111 (368)
T 2dby_A           80 VKGAHKGEGLGNQFLAHI----REVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCCCSSSCTTHHHHHHH----HTCSEEEEEEECCC
T ss_pred             cccccccchHHHHHHHHH----HhCCEEEEEEECCC
Confidence            876543333334444333    35699999999863

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.40  E-value=7.8e-13  Score=120.03  Aligned_cols=118  Identities=20%  Similarity=0.274  Sum_probs=78.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccC--------------CCCCceeEEEEEEEEee---------------C
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKA--------------GSSGVTKTCEMQRTMLK---------------D   67 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~--------------~~~~~t~~~~~~~~~~~---------------~   67 (225)
                      ....+|+|+|+.|+|||||+|+|++........              ...+.|.......+.+.               .
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            346799999999999999999998653211110              11233433333344442               1


Q ss_pred             CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 036158           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGG  147 (225)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~  147 (225)
                      +..++||||||+.++..       .+..    +...+|++|+|+|+.++.+..+...+..+..   .  ..|+++++||+
T Consensus        97 ~~~i~liDTPG~~df~~-------~~~~----~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~---~--~~p~ilviNK~  160 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSS-------EVTA----ALRVTDGALVVVDTIEGVCVQTETVLRQALG---E--RIKPVVVINKV  160 (842)
T ss_dssp             EEEEEEECCCCCCSSCH-------HHHH----HHHTCSEEEEEEETTTBSCHHHHHHHHHHHH---T--TCEEEEEEECH
T ss_pred             CceEEEEECcCchhhHH-------HHHH----HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH---c--CCCeEEEEECC
Confidence            56899999999987641       2222    2346699999999987777777665554432   1  37899999999


Q ss_pred             CCC
Q 036158          148 DEL  150 (225)
Q Consensus       148 D~~  150 (225)
                      |..
T Consensus       161 D~~  163 (842)
T 1n0u_A          161 DRA  163 (842)
T ss_dssp             HHH
T ss_pred             Ccc
Confidence            976

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.38  E-value=4.9e-13  Score=109.97  Aligned_cols=114  Identities=15%  Similarity=0.102  Sum_probs=58.6

Q ss_pred             CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 036158           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTG  146 (225)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k  146 (225)
                      .+..+.|+||||+.+.    .   ..+       ...+|++++|+|+....   +.+.+..  ..+    ..|.++|+||
T Consensus       165 ~~~~~iliDT~Gi~~~----~---~~l-------~~~~d~vl~V~d~~~~~---~~~~i~~--~il----~~~~ivVlNK  221 (349)
T 2www_A          165 AGYDIILIETVGVGQS----E---FAV-------ADMVDMFVLLLPPAGGD---ELQGIKR--GII----EMADLVAVTK  221 (349)
T ss_dssp             TTCSEEEEECCCC--C----H---HHH-------HTTCSEEEEEECCC-----------------C----CSCSEEEECC
T ss_pred             CCCCEEEEECCCcchh----h---hhH-------HhhCCEEEEEEcCCcch---hHHHhHH--HHH----hcCCEEEEee
Confidence            5668999999998633    1   111       23679999999986331   1111111  111    2578999999


Q ss_pred             CCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEE-eeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          147 GDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVL-FDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       147 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      +|.....  ........     +...++........ .......|+.++.++++|++.|.++..+
T Consensus       222 ~Dl~~~~--~~~~~~~~-----l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          222 SDGDLIV--PARRIQAE-----YVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             CSGGGHH--HHHHHHHH-----HHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ecCCCch--hHHHHHHH-----HHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            9975321  11111111     22222111100000 0011235677789999999999988754

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.30  E-value=1.1e-11  Score=101.69  Aligned_cols=111  Identities=11%  Similarity=0.076  Sum_probs=63.0

Q ss_pred             CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 036158           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTG  146 (225)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k  146 (225)
                      .+..++|+||||+.+..       ..+       ...+|++++|+++....   ..+.+..  ..    ...|.++|+||
T Consensus       147 ~~~~i~liDTpG~~~~~-------~~~-------~~~aD~vl~Vvd~~~~~---~~~~l~~--~~----~~~p~ivv~NK  203 (341)
T 2p67_A          147 AGYDVVIVETVGVGQSE-------TEV-------ARMVDCFISLQIAGGGD---DLQGIKK--GL----MEVADLIVINK  203 (341)
T ss_dssp             TTCSEEEEEEECCTTHH-------HHH-------HTTCSEEEEEECC---------CCCCH--HH----HHHCSEEEECC
T ss_pred             cCCCEEEEeCCCccchH-------HHH-------HHhCCEEEEEEeCCccH---HHHHHHH--hh----hcccCEEEEEC
Confidence            46789999999987431       111       25789999999986321   1111110  00    12578999999


Q ss_pred             CCCCCCCcccHHHHhhhcCCchHHHHHHHcCC---cEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          147 GDELEDNDETLEDYLGRECPKPLKEILQLCDN---RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       147 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      +|.....  .+.....+     +++.+...+.   .+  +....+.|+.++.++++|++.|.+...
T Consensus       204 ~Dl~~~~--~~~~~~~~-----l~~~l~~~~~~~~~~--~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          204 DDGDNHT--NVAIARHM-----YESALHILRRKYDEW--QPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             CCTTCHH--HHHHHHHH-----HHHHHHHSCCSBTTB--CCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             CCCCChH--HHHHHHHH-----HHHHHHhccccccCC--CCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            9976431  23332223     3333333221   00  011234567778999999999988765

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.29  E-value=2e-11  Score=96.22  Aligned_cols=188  Identities=13%  Similarity=0.067  Sum_probs=96.0

Q ss_pred             CCCCCCceeEEEEcCCCCCHHHHHHHHh-----CCccccccCCCCCceeE----------EEEEEE--------------
Q 036158           13 TSPSNGERNLVLVGRTGNGKSATANSIL-----GKRAFKSKAGSSGVTKT----------CEMQRT--------------   63 (225)
Q Consensus        13 ~~~~~~~~~i~v~G~~g~GKSSlin~l~-----~~~~~~~~~~~~~~t~~----------~~~~~~--------------   63 (225)
                      .........+++.|+.|+||||+++.|.     |.++......+......          ......              
T Consensus         8 ~~~~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (262)
T 1yrb_A            8 HHHGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVES   87 (262)
T ss_dssp             CCTTCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHH
T ss_pred             ccCCcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEec
Confidence            3445566889999999999999999997     65543222111110000          000000              


Q ss_pred             ----------------EeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHH-HHH
Q 036158           64 ----------------MLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGA-AIH  126 (225)
Q Consensus        64 ----------------~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~-~~~  126 (225)
                                      .+..+..++||||||..+..     ....+...+...... +++++|+|+....+..+.. ...
T Consensus        88 ~~~~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~-----~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~  161 (262)
T 1yrb_A           88 YDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETF-----LFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRF  161 (262)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHH-----HHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHhhcCCEEEEeCCCccchh-----hhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHH
Confidence                            00012379999999975321     000111111123345 8999999886444443322 111


Q ss_pred             HHHHHhcccccccEEEEEecCCCCCCCc-ccHHHHhhhcCCchHHH-----------------HHHHcCCcEEEeeCCCc
Q 036158          127 ILESLFGKKISDYMIVVFTGGDELEDND-ETLEDYLGRECPKPLKE-----------------ILQLCDNRCVLFDNKTK  188 (225)
Q Consensus       127 ~l~~~~~~~~~~~~~vv~~k~D~~~~~~-~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~  188 (225)
                      ...... .....|+++|+||+|...... ..+.+++.+ .......                 .++..+..    ....+
T Consensus       162 ~~~~~~-~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~-~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~  235 (262)
T 1yrb_A          162 FALLID-LRLGATTIPALNKVDLLSEEEKERHRKYFED-IDYLTARLKLDPSMQGLMAYKMCSMMTEVLPP----VRVLY  235 (262)
T ss_dssp             HHHHHH-HHHTSCEEEEECCGGGCCHHHHHHHHHHHHC-HHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCC----CCCEE
T ss_pred             HHHHHh-cccCCCeEEEEecccccccccHHHHHHHHhC-hHHHHHHHhccccccchhHhHHHHHHHHhcCc----ccceE
Confidence            111111 112378999999999764320 011222111 0000111                 12332221    12334


Q ss_pred             cccccHHHHHHHHHHHHHHHHHcC
Q 036158          189 DTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       189 ~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                      .|+.++.++++|++.|.+.++...
T Consensus       236 ~SA~~~~gi~~l~~~i~~~~~~~~  259 (262)
T 1yrb_A          236 LSAKTREGFEDLETLAYEHYCTCG  259 (262)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             EEecCcccHHHHHHHHHHHhcccc
Confidence            567778999999999998887653

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.26  E-value=3.1e-13  Score=111.92  Aligned_cols=125  Identities=17%  Similarity=0.192  Sum_probs=72.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccc-----cccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAF-----KSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEI   93 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~-----~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (225)
                      ..+|+++|.+|+|||||+|+|++....     ......+++|+......  +  +..+.++||||+.+.....+.+..+.
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~--~--~~~~~liDtPG~~~~~~~~~~l~~~~  235 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP--L--DEESSLYDTPGIINHHQMAHYVGKQS  235 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE--S--SSSCEEEECCCBCCTTSGGGGSCHHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE--e--cCCeEEEeCCCcCcHHHHHHHhhHHH
Confidence            468999999999999999999986321     11233456665554433  3  23389999999987642222222222


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN  153 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~  153 (225)
                      ...+ .....++.++++++....+.......++.+.     ....|+++++||.|.+...
T Consensus       236 l~~~-~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~-----~~~~~~~~v~nk~d~~~~~  289 (368)
T 3h2y_A          236 LKLI-TPTKEIKPMVFQLNEEQTLFFSGLARFDYVS-----GGRRAFTCHFSNRLTIHRT  289 (368)
T ss_dssp             HHHH-SCSSCCCCEEEEECTTEEEEETTTEEEEEEE-----SSSEEEEEEECTTSCEEEE
T ss_pred             HHHh-ccccccCceEEEEcCCCEEEEcceEEEEEec-----CCCceEEEEecCccccccc
Confidence            2221 1235778899998874221111111122222     1236899999999987653

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.22  E-value=8.5e-11  Score=100.59  Aligned_cols=164  Identities=12%  Similarity=0.106  Sum_probs=92.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHh------CCccccccCCCCCcee-----------EEEEEE-----------------
Q 036158           17 NGERNLVLVGRTGNGKSATANSIL------GKRAFKSKAGSSGVTK-----------TCEMQR-----------------   62 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~------~~~~~~~~~~~~~~t~-----------~~~~~~-----------------   62 (225)
                      .+..+|+++|.+|+||||+++.|.      |.++............           ....+.                 
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            446789999999999999999998      6654322211100000           000111                 


Q ss_pred             EEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccccc-EE
Q 036158           63 TMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDY-MI  141 (225)
Q Consensus        63 ~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~  141 (225)
                      +.+ .+..++||||||....   ...+..++......  ..+|.+++|+|+....+  .....+.+.+.      .| ..
T Consensus       179 ~~~-~~~DvvIIDTpG~~~~---~~~l~~el~~~~~~--i~pd~vllVvDa~~g~~--~~~~a~~~~~~------~~i~g  244 (504)
T 2j37_W          179 FKN-ENFEIIIVDTSGRHKQ---EDSLFEEMLQVANA--IQPDNIVYVMDASIGQA--CEAQAKAFKDK------VDVAS  244 (504)
T ss_dssp             HHH-TTCCEEEEEECCCCTT---CHHHHHHHHHHHHH--HCCSEEEEEEETTCCTT--HHHHHHHHHHH------HCCCC
T ss_pred             HHH-CCCcEEEEeCCCCccc---chhHHHHHHHHHhh--hcCceEEEEEecccccc--HHHHHHHHHhh------cCceE
Confidence            011 4568999999998742   23344444333321  16799999999975433  23333333331      45 48


Q ss_pred             EEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEee------------CCCccccccHHH-HHHHHHHHHHH
Q 036158          142 VVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFD------------NKTKDTAKRTEQ-VGKLLSLVNSV  207 (225)
Q Consensus       142 vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~-v~~l~~~i~~~  207 (225)
                      +|+||+|.......             ..++...++.++.++.            .....++..+.+ +.+|++++.+.
T Consensus       245 vVlNK~D~~~~~g~-------------~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          245 VIVTKLDGHAKGGG-------------ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             EEEECTTSCCCCTH-------------HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             EEEeCCccccchHH-------------HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            99999997643211             1223334444443322            222345556667 88899888765

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.22  E-value=5e-11  Score=97.52  Aligned_cols=111  Identities=13%  Similarity=0.072  Sum_probs=59.3

Q ss_pred             CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHH-HHHHHHhcccccccEEEEEe
Q 036158           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAI-HILESLFGKKISDYMIVVFT  145 (225)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~vv~~  145 (225)
                      .+..+.|+||||+.+..   .    .+       ...+|.+++|++....   .+.+.+ ..+.+       .+.++++|
T Consensus       146 ~~~~~iliDT~Gi~~~~---~----~v-------~~~~d~vl~v~d~~~~---~~~~~i~~~i~~-------~~~ivvlN  201 (337)
T 2qm8_A          146 AGFDVILVETVGVGQSE---T----AV-------ADLTDFFLVLMLPGAG---DELQGIKKGIFE-------LADMIAVN  201 (337)
T ss_dssp             TTCCEEEEEECSSSSCH---H----HH-------HTTSSEEEEEECSCC---------CCTTHHH-------HCSEEEEE
T ss_pred             CCCCEEEEECCCCCcch---h----hH-------HhhCCEEEEEEcCCCc---ccHHHHHHHHhc-------cccEEEEE
Confidence            46789999999987531   1    11       2467999999987522   111111 11111       35678889


Q ss_pred             cCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC---cEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          146 GGDELEDNDETLEDYLGRECPKPLKEILQLCDN---RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       146 k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      |+|..... .......++     +...+.....   .+  .......|+..+.++++|++.|.++..
T Consensus       202 K~Dl~~~~-~~s~~~~~~-----l~~a~~l~~~~~~~~--~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          202 KADDGDGE-RRASAAASE-----YRAALHILTPPSATW--TPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             CCSTTCCH-HHHHHHHHH-----HHHHHTTBCCSBTTB--CCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             chhccCch-hHHHHHHHH-----HHHHHHhccccccCC--CCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            99975432 111112222     2222221110   00  001122566777899999999988776

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.22  E-value=1.4e-11  Score=102.13  Aligned_cols=92  Identities=17%  Similarity=0.190  Sum_probs=50.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeC----------------CceEEEEeCCCCC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKD----------------GQVVNVIDTPGLF   80 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtPG~~   80 (225)
                      ....+|+++|.+|+|||||+|+|++...  .....+++|..+....+.+++                ...+.+|||||+.
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~--~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~   97 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQA--SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV   97 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCc--cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence            4568899999999999999999998875  223455666666655665522                1249999999998


Q ss_pred             CCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 036158           81 DSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVR  114 (225)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~  114 (225)
                      ......+.+...+..    +...+|++++|+|+.
T Consensus        98 ~~as~~~glg~~~l~----~ir~aD~Il~VvD~~  127 (396)
T 2ohf_A           98 KGAHNGQGLGNAFLS----HISACDGIFHLTRAF  127 (396)
T ss_dssp             ---------CCHHHH----HHHTSSSEEEEEEC-
T ss_pred             cccchhhHHHHHHHH----HHHhcCeEEEEEecC
Confidence            654332222223333    334669999999975

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.22  E-value=5.4e-13  Score=110.51  Aligned_cols=124  Identities=19%  Similarity=0.198  Sum_probs=75.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCC-----ccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGK-----RAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEI   93 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~-----~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~   93 (225)
                      ..+|+++|.+|+|||||+|+|++.     ....+ ...+++|+......  +  +..+.++||||+.+.....+.+..+.
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~-~~~~gtT~~~~~~~--~--~~~~~liDtPG~~~~~~~~~~l~~~~  236 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITT-SYFPGTTLDMIEIP--L--ESGATLYDTPGIINHHQMAHFVDARD  236 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEE-EECTTSSCEEEEEE--C--STTCEEEECCSCCCCSSGGGGSCTTT
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceee-cCCCCeEEeeEEEE--e--CCCeEEEeCCCcCcHHHHHHHHhHHH
Confidence            467999999999999999999986     22222 23556666654433  3  33489999999986542222222222


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN  153 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~  153 (225)
                      ...+ .....+++++++++....+.......++.+.     ....|+++++||.|.+...
T Consensus       237 l~~~-~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~-----~~~~~~~~v~~k~d~~~~~  290 (369)
T 3ec1_A          237 LKII-TPKREIHPRVYQLNEGQTLFFGGLARLDYIK-----GGRRSFVCYMANELTVHRT  290 (369)
T ss_dssp             HHHH-SCSSCCCCEEEEECTTEEEEETTTEEEEEEE-----SSSEEEEEEECTTSCEEEE
T ss_pred             HHHH-hcccccCceEEEEcCCceEEECCEEEEEEcc-----CCCceEEEEecCCcccccc
Confidence            2222 1235789999999884221111111122221     1236899999999987543

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.18  E-value=5.8e-10  Score=93.23  Aligned_cols=170  Identities=18%  Similarity=0.132  Sum_probs=93.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCC---ceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSG---VTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ...++|+|++|+|||||+|.|.|......+....+   .|..  .+....+....++++|+||++......    .++..
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~--~~v~q~~~~~~ltv~D~~g~~~~~~~~----~~~L~  142 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME--RHPYKHPNIPNVVFWDLPGIGSTNFPP----DTYLE  142 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC--CEEEECSSCTTEEEEECCCGGGSSCCH----HHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee--EEeccccccCCeeehHhhcccchHHHH----HHHHH
Confidence            45899999999999999999999653322222211   1211  112222122368999999987432222    22222


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCC-------CCcccHHHHhhhcCCch
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELE-------DNDETLEDYLGRECPKP  168 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~-------~~~~~~~~~~~~~~~~~  168 (225)
                      .+..  ...+.+++ ++.. +.......+...+...     .+|+++|+||.|.+-       -+....++..+.     
T Consensus       143 ~~~L--~~~~~~~~-lS~G-~~~kqrv~la~aL~~~-----~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~-----  208 (413)
T 1tq4_A          143 KMKF--YEYDFFII-ISAT-RFKKNDIDIAKAISMM-----KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQD-----  208 (413)
T ss_dssp             HTTG--GGCSEEEE-EESS-CCCHHHHHHHHHHHHT-----TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHH-----
T ss_pred             HcCC--CccCCeEE-eCCC-CccHHHHHHHHHHHhc-----CCCeEEEEecCcccccCcccccCCHHHHHHHHHH-----
Confidence            2222  22345554 7765 3444555566666552     379999999988651       111123333333     


Q ss_pred             HHHHH----HHcC---CcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          169 LKEIL----QLCD---NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       169 ~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                      ++++.    ...+   ...+.+++....    +.++++|.+.|.+.+++..
T Consensus       209 l~~l~~~~l~~~g~~~~~iiliSsh~l~----~~~~e~L~d~I~~~Lpeg~  255 (413)
T 1tq4_A          209 IRLNCVNTFRENGIAEPPIFLLSNKNVC----HYDFPVLMDKLISDLPIYK  255 (413)
T ss_dssp             HHHHHHHHHHHTTCSSCCEEECCTTCTT----STTHHHHHHHHHHHSCGGG
T ss_pred             HHHHHHHHHHhcCCCCCcEEEEecCcCC----ccCHHHHHHHHHHhCccch
Confidence            33333    2222   234555554322    2579999999988887654

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=99.14  E-value=2.1e-10  Score=99.79  Aligned_cols=110  Identities=20%  Similarity=0.178  Sum_probs=64.3

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccc-cccCCCCCceeEEEEEEEE--eeCCceEEEEeCCCCCCCCC-CcHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAF-KSKAGSSGVTKTCEMQRTM--LKDGQVVNVIDTPGLFDSSA-DSEFVSK   91 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~-~~~~~~~~~t~~~~~~~~~--~~~~~~~~liDtPG~~~~~~-~~~~~~~   91 (225)
                      ..+..+|+|+|.+|+|||||+|+|+|.... .......+.|.........  ...+..+.|+||||+.+... .......
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~  114 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSW  114 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHH
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHH
Confidence            345688999999999999999999998742 2222222344443322221  12467899999999987543 2221122


Q ss_pred             HHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHH
Q 036158           92 EIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESL  131 (225)
Q Consensus        92 ~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~  131 (225)
                      .+.-.+...    +  ++|+++...++..+...+..+.+.
T Consensus       115 ~fala~lls----s--~lv~n~~~~i~~~dl~~l~~v~e~  148 (592)
T 1f5n_A          115 IFALAVLLS----S--TFVYNSIGTINQQAMDQLYYVTEL  148 (592)
T ss_dssp             HHHHHHHHC----S--EEEEEEESCSSHHHHHTTHHHHTH
T ss_pred             HHHHHHHhc----C--eEEEECCCCccHHHHHHHHHHHHH
Confidence            111111112    2  455565557788877766655443

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.12  E-value=1.4e-10  Score=88.91  Aligned_cols=157  Identities=13%  Similarity=0.079  Sum_probs=83.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc-----ccccCCCCCcee--------EEEEEEEEe-----------------eC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA-----FKSKAGSSGVTK--------TCEMQRTML-----------------KD   67 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~-----~~~~~~~~~~t~--------~~~~~~~~~-----------------~~   67 (225)
                      ..++|+++|.+|+|||||+|.|++...     ....... +.+.        ......+..                 ..
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDV-VSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS  107 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSC-CCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCC-CCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence            457899999999999999999986421     0000001 1000        000011100                 02


Q ss_pred             CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 036158           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGG  147 (225)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~  147 (225)
                      +..+.+|||||.....  .            ......+.+++|+|+.....  .  ....... +    ..|.++|+||+
T Consensus       108 ~~d~iiidt~G~~~~~--~------------~~~~~~~~~i~vvd~~~~~~--~--~~~~~~~-~----~~~~iiv~NK~  164 (221)
T 2wsm_A          108 DCDLLLIENVGNLICP--V------------DFDLGENYRVVMVSVTEGDD--V--VEKHPEI-F----RVADLIVINKV  164 (221)
T ss_dssp             TCSEEEEEEEEBSSGG--G------------GCCCSCSEEEEEEEGGGCTT--H--HHHCHHH-H----HTCSEEEEECG
T ss_pred             CCCEEEEeCCCCCCCC--c------------hhccccCcEEEEEeCCCcch--h--hhhhhhh-h----hcCCEEEEecc
Confidence            3468889888852110  0            01124578899999864321  1  1111111 1    26889999999


Q ss_pred             CCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          148 DELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       148 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      |.........++.         .+.++..+.....+    ..|+.++.++++|++.|.+.+.+.
T Consensus       165 Dl~~~~~~~~~~~---------~~~~~~~~~~~~i~----~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          165 ALAEAVGADVEKM---------KADAKLINPRAKII----EMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             GGHHHHTCCHHHH---------HHHHHHHCTTSEEE----ECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             cCCcchhhHHHHH---------HHHHHHhCCCCeEE----EeecCCCCCHHHHHHHHHHHHHHH
Confidence            9753210122222         22333333222222    345567789999999998877554

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.11  E-value=1.1e-10  Score=97.01  Aligned_cols=92  Identities=16%  Similarity=0.146  Sum_probs=65.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC-----------------ceEEEEeCCCC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG-----------------QVVNVIDTPGL   79 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~liDtPG~   79 (225)
                      ....+|+++|++|+|||||+|+|++...... ...+++|..+....+.+ .+                 ..+.++||||+
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~-~~~p~tTi~p~~G~v~v-~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl   95 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNP-ANYPYATIDPEEAKVAV-PDERFDWLCEAYKPKSRVPAFLTVFDIAGL   95 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTST-TCCSSCCCCTTEEEEEE-CCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcccc-cCCCceeecceeeeeee-CCcchhhhhhhcccccccCcceEEEecccc
Confidence            4568999999999999999999999764333 33566676666666666 33                 35899999999


Q ss_pred             CCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 036158           80 FDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVR  114 (225)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~  114 (225)
                      .......+.+...+...+    ..+|++++|++..
T Consensus        96 ~~~~s~~e~L~~~fl~~i----r~~d~il~Vvd~~  126 (392)
T 1ni3_A           96 TKGASTGVGLGNAFLSHV----RAVDAIYQVVRAF  126 (392)
T ss_dssp             CCCCCSSSSSCHHHHHHH----TTCSEEEEEEECC
T ss_pred             ccCCcHHHHHHHHHHHHH----HHHHHHHHHHhcc
Confidence            865443333333343333    3679999999874

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=99.11  E-value=1.7e-10  Score=92.09  Aligned_cols=67  Identities=22%  Similarity=0.389  Sum_probs=43.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEF   88 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~   88 (225)
                      ...++|+++|.+|+|||||+|+|++.....++ ..+++|+..+.  +.+  +..+.|+||||+........+
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~--~~~--~~~~~l~DtpG~~~~~~~~~~  184 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTG-DRPGITTSQQW--VKV--GKELELLDTPGILWPKFEDEL  184 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CC--EEE--TTTEEEEECCCCCCSCCCCHH
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecC-CCCCeeeeeEE--EEe--CCCEEEEECcCcCCCCCCCHH
Confidence            35689999999999999999999998765443 34566666543  233  457999999999876655443

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.08  E-value=1.9e-10  Score=101.00  Aligned_cols=81  Identities=17%  Similarity=0.188  Sum_probs=45.0

Q ss_pred             ceEEEEeCCCCCCCC--CCcHHHHHHHHHHHhhcCC-CccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEe
Q 036158           69 QVVNVIDTPGLFDSS--ADSEFVSKEIVKCIGMTKD-GIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFT  145 (225)
Q Consensus        69 ~~~~liDtPG~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~  145 (225)
                      ..+.|+|.||+....  ..+......+...+..+.. ...+++++++.+..+.  ....++.+...-..  ..++++|+|
T Consensus       147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a--~~~~l~la~~v~~~--g~rtI~VlT  222 (608)
T 3szr_A          147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA--TTEALSMAQEVDPE--GDRTIGILT  222 (608)
T ss_dssp             CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT--TCHHHHHHHHHCSS--CCSEEEEEE
T ss_pred             CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc--cHHHHHHHHHHhhc--CCceEEEec
Confidence            469999999987632  2233344455555555433 3355666666542322  22344555554222  368999999


Q ss_pred             cCCCCCCC
Q 036158          146 GGDELEDN  153 (225)
Q Consensus       146 k~D~~~~~  153 (225)
                      |+|.+...
T Consensus       223 K~Dlv~~g  230 (608)
T 3szr_A          223 KPDLVDKG  230 (608)
T ss_dssp             CGGGSSSS
T ss_pred             chhhcCcc
Confidence            99988654

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.07  E-value=9.2e-10  Score=89.27  Aligned_cols=143  Identities=13%  Similarity=0.118  Sum_probs=84.3

Q ss_pred             ceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCC-------CC-CCHHHHHHH
Q 036158           54 VTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVR-------NR-FSEEEGAAI  125 (225)
Q Consensus        54 ~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~-------~~-~~~~~~~~~  125 (225)
                      .|.......+.+ .+..+.+|||+|.           +..+..+..++.+++++|+|++++       +. -...-.+.+
T Consensus       153 ~TiGi~~~~~~~-~~v~l~iwDtgGQ-----------e~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~  220 (327)
T 3ohm_A          153 PTTGIIEYPFDL-QSVIFRMVDVGGQ-----------RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESK  220 (327)
T ss_dssp             CCCSEEEEEEEE-TTEEEEEEEECCS-----------HHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHH
T ss_pred             ceeeEEEEEEEe-eceeeEEEEcCCc-----------hhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHH
Confidence            355556666777 7889999999994           456677778999999999999764       11 112233455


Q ss_pred             HHHHHHhccc--ccccEEEEEecCCCCCCC--cccHHHHhhhc-----CC----chHHHHHHHc----CCcEEEeeCCCc
Q 036158          126 HILESLFGKK--ISDYMIVVFTGGDELEDN--DETLEDYLGRE-----CP----KPLKEILQLC----DNRCVLFDNKTK  188 (225)
Q Consensus       126 ~~l~~~~~~~--~~~~~~vv~~k~D~~~~~--~~~~~~~~~~~-----~~----~~~~~~~~~~----~~~~~~~~~~~~  188 (225)
                      .++.+.....  ...|+++++||+|+....  ...+..+..+.     ..    +.+.+.+...    ...++.+.    
T Consensus       221 ~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~----  296 (327)
T 3ohm_A          221 ALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHF----  296 (327)
T ss_dssp             HHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEE----
T ss_pred             HHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEE----
Confidence            5666655432  247899999999965310  00111111100     00    0112122111    12333343    


Q ss_pred             cccccHHHHHHHHHHHHHHHHHcC
Q 036158          189 DTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       189 ~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                      ++|....+|+.++..+.+.+..++
T Consensus       297 TsA~d~~nV~~vF~~v~~~Il~~~  320 (327)
T 3ohm_A          297 TCATDTENIRFVFAAVKDTILQLN  320 (327)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             EEeecCHHHHHHHHHHHHHHHHHh
Confidence            345566999999999998877654

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=98.92  E-value=2.5e-08  Score=81.21  Aligned_cols=84  Identities=11%  Similarity=0.106  Sum_probs=58.9

Q ss_pred             eeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCC--------CCCHHHHHHHH
Q 036158           55 TKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRN--------RFSEEEGAAIH  126 (225)
Q Consensus        55 t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~--------~~~~~~~~~~~  126 (225)
                      |.......+.+ .+..+.+|||+|.           +..+..+..++.+++++|+|+|+++        .-...-.+.+.
T Consensus       148 TiGi~~~~~~~-~~v~l~iwDtaGQ-----------e~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~  215 (340)
T 4fid_A          148 TTGIHEYDFVV-KDIPFHLIDVGGQ-----------RSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIA  215 (340)
T ss_dssp             CCSCEEEEEES-SSCEEEEEECCSC-----------HHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHH
T ss_pred             eeeeEEEEEEe-eeeeeccccCCCc-----------ccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHH
Confidence            45556666777 7789999999994           4566777789999999999999861        01122234455


Q ss_pred             HHHHHhccc--ccccEEEEEecCCCC
Q 036158          127 ILESLFGKK--ISDYMIVVFTGGDEL  150 (225)
Q Consensus       127 ~l~~~~~~~--~~~~~~vv~~k~D~~  150 (225)
                      ++.+.....  ...|++++.||+|+.
T Consensus       216 ~~~~i~~~~~~~~~piiLv~NK~DL~  241 (340)
T 4fid_A          216 VFKDIMTNEFLKGAVKLIFLNKMDLF  241 (340)
T ss_dssp             HHHHHHHCGGGTTSEEEEEEECHHHH
T ss_pred             HHHHHhhhhccCCCeEEEEEECchhh
Confidence            555554432  246999999999965

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.87  E-value=1.5e-09  Score=85.74  Aligned_cols=60  Identities=30%  Similarity=0.447  Sum_probs=40.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCC
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSA   84 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~   84 (225)
                      .+++++|.+|+|||||+|+|.+.....+. ..+++|+..+..  .  .+..+.||||||+.+...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~-~~~g~T~~~~~~--~--~~~~~~l~DtpG~~~~~~  159 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVG-AQPGITKGIQWF--S--LENGVKILDTPGILYKNI  159 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEE--E--CTTSCEEESSCEECCCCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccC-CCCCCccceEEE--E--eCCCEEEEECCCcccCcC
Confidence            69999999999999999999988764443 244555554322  2  245789999999997654

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.80  E-value=1.1e-07  Score=79.86  Aligned_cols=143  Identities=13%  Similarity=0.116  Sum_probs=78.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHh------CCccccccCCCCCc-----------eeEEEEEEEEe---------------
Q 036158           18 GERNLVLVGRTGNGKSATANSIL------GKRAFKSKAGSSGV-----------TKTCEMQRTML---------------   65 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~------~~~~~~~~~~~~~~-----------t~~~~~~~~~~---------------   65 (225)
                      +...|+++|++|+||||+++.|.      |.++..........           ......+....               
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            46789999999999999998886      33332111110000           00000000000               


Q ss_pred             -eCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEE
Q 036158           66 -KDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVF  144 (225)
Q Consensus        66 -~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~  144 (225)
                       ..+..++|+||||....   ......++.......  .+|.+++|+|+...  .......+.+.+.     .....+|+
T Consensus       179 ~~~~~DvVIIDTaGrl~~---d~~lm~el~~i~~~~--~pd~vlLVvDA~~g--q~a~~~a~~f~~~-----~~i~gVIl  246 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKE---DKALIEEMKQISNVI--HPHEVILVIDGTIG--QQAYNQALAFKEA-----TPIGSIIV  246 (443)
T ss_dssp             HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGG--GGHHHHHHHHHHS-----CTTEEEEE
T ss_pred             HhCCCCEEEEECCCcccc---hHHHHHHHHHHHHhh--cCceEEEEEeCCCc--hhHHHHHHHHHhh-----CCCeEEEE
Confidence             02357999999997642   344444444432222  57999999998743  2223333333332     25667999


Q ss_pred             ecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeC
Q 036158          145 TGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDN  185 (225)
Q Consensus       145 ~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (225)
                      ||+|.....    .         .+.++...++.++.++..
T Consensus       247 TKlD~~~~g----G---------~~ls~~~~~g~PI~fig~  274 (443)
T 3dm5_A          247 TKLDGSAKG----G---------GALSAVAATGAPIKFIGT  274 (443)
T ss_dssp             ECCSSCSSH----H---------HHHHHHHTTCCCEEEEEC
T ss_pred             ECCCCcccc----c---------HHHHHHHHHCCCEEEEEc
Confidence            999965331    0         133455566777666554

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.74  E-value=2.6e-08  Score=76.40  Aligned_cols=25  Identities=20%  Similarity=0.448  Sum_probs=22.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ..++|+|+|.+|+|||||++.|+..
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4689999999999999999999854

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=98.61  E-value=1.2e-07  Score=79.98  Aligned_cols=110  Identities=18%  Similarity=0.182  Sum_probs=59.8

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCC-----------------ccccccCCCCCceeEEEEEE----EEeeC--CceEE
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGK-----------------RAFKSKAGSSGVTKTCEMQR----TMLKD--GQVVN   72 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~-----------------~~~~~~~~~~~~t~~~~~~~----~~~~~--~~~~~   72 (225)
                      ..+...|+|+|++++|||||+|.|+|.                 ..+...+.....|...-...    ...+.  ...+.
T Consensus        64 ~~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vv  143 (447)
T 3q5d_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL  143 (447)
T ss_dssp             TSBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEE
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEE
Confidence            346678999999999999999999964                 22322222222233222111    11112  24699


Q ss_pred             EEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHH
Q 036158           73 VIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESL  131 (225)
Q Consensus        73 liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~  131 (225)
                      |+||||+.+... +.+....+......   -.+.+||-+  ...+...+.+.+..+.++
T Consensus       144 llDTeG~~~~~~-~~~~d~~ifal~~l---LSs~~IyN~--~~~i~~~~l~~L~~~~e~  196 (447)
T 3q5d_A          144 LMDTQGTFDSQS-TLRDSATVFALSTM---ISSIQVYNL--SQNVQEDDLQHLQLFTEY  196 (447)
T ss_dssp             EEEEECCCSSHH-HHHHHHHHHHHHHH---HCSEEEEEE--SSSCCHHHHHHHHHHHHH
T ss_pred             EEcCCccccccc-chhhhHHHHHHHHH---HhhHHHHhh--cccccHHHHHHHHHHHHH
Confidence            999999986532 11111122211111   125555544  336677777777665553

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.60  E-value=4.6e-08  Score=82.38  Aligned_cols=121  Identities=18%  Similarity=0.162  Sum_probs=67.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCC------ccccccCCCC----------------------C-ceeEEE-E--EEE-E
Q 036158           18 GERNLVLVGRTGNGKSATANSILGK------RAFKSKAGSS----------------------G-VTKTCE-M--QRT-M   64 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~------~~~~~~~~~~----------------------~-~t~~~~-~--~~~-~   64 (225)
                      +...|+++|++|+||||+++.|.+.      ++.-......                      . .+.+.. .  ..+ .
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~  177 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK  177 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence            3468999999999999999998752      2111100000                      0 111100 0  000 1


Q ss_pred             eeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccc-ccEEEE
Q 036158           65 LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKIS-DYMIVV  143 (225)
Q Consensus        65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~vv  143 (225)
                      + .+..++|+||||....   ...+..++...  .....+|.+++|+|+....  .   .+..+.. |... . ....+|
T Consensus       178 ~-~~~D~vIIDT~G~~~~---~~~l~~~l~~i--~~~~~~d~vllVvda~~g~--~---~~~~~~~-~~~~-~~~i~gvV  244 (432)
T 2v3c_C          178 F-KKADVLIIDTAGRHKE---EKGLLEEMKQI--KEITNPDEIILVIDGTIGQ--Q---AGIQAKA-FKEA-VGEIGSII  244 (432)
T ss_dssp             T-SSCSEEEEECCCSCSS---HHHHHHHHHHT--TSSSCCSEEEEEEEGGGGG--G---HHHHHHH-HHTT-SCSCEEEE
T ss_pred             h-hCCCEEEEcCCCCccc---cHHHHHHHHHH--HHHhcCcceeEEeeccccH--H---HHHHHHH-Hhhc-ccCCeEEE
Confidence            2 4557999999997632   33344444322  2233689999999986442  1   2222322 3222 1 238899


Q ss_pred             EecCCCCC
Q 036158          144 FTGGDELE  151 (225)
Q Consensus       144 ~~k~D~~~  151 (225)
                      +||+|...
T Consensus       245 lnK~D~~~  252 (432)
T 2v3c_C          245 VTKLDGSA  252 (432)
T ss_dssp             EECSSSCS
T ss_pred             EeCCCCcc
Confidence            99999754

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=98.57  E-value=3.3e-07  Score=75.17  Aligned_cols=141  Identities=15%  Similarity=0.154  Sum_probs=82.8

Q ss_pred             eeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC--------CHHHHHHHH
Q 036158           55 TKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRF--------SEEEGAAIH  126 (225)
Q Consensus        55 t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~--------~~~~~~~~~  126 (225)
                      |.......+.+ ++..+.+|||+|...           .+..+..++.+++++|||+|+++.-        ...-.+...
T Consensus       180 T~Gi~~~~~~~-~~~~l~iwDt~GQe~-----------~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~  247 (353)
T 1cip_A          180 TTGIVETHFTF-KDLHFKMFDVGGQRS-----------ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMK  247 (353)
T ss_dssp             CCSEEEEEEEE-TTEEEEEEEECCSGG-----------GGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHH
T ss_pred             eeceEEEEEee-CCeeEEEEeCCCchh-----------hhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHH
Confidence            45555666777 688999999999642           3455567889999999999997321        122344555


Q ss_pred             HHHHHhccc--ccccEEEEEecCCCCCCC--cccHHHH----hhhcCCchHHHHHH----Hc-----CCcEEEeeCCCcc
Q 036158          127 ILESLFGKK--ISDYMIVVFTGGDELEDN--DETLEDY----LGRECPKPLKEILQ----LC-----DNRCVLFDNKTKD  189 (225)
Q Consensus       127 ~l~~~~~~~--~~~~~~vv~~k~D~~~~~--~~~~~~~----~~~~~~~~~~~~~~----~~-----~~~~~~~~~~~~~  189 (225)
                      ++.++....  ...|+++++||.|+....  ...+..+    ..........+.+.    ..     ...+..+    .+
T Consensus       248 ~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~----et  323 (353)
T 1cip_A          248 LFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTH----FT  323 (353)
T ss_dssp             HHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEE----EC
T ss_pred             HHHHHHcCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEE----EE
Confidence            666655432  247999999999974210  0000000    00000011222222    22     2233333    34


Q ss_pred             ccccHHHHHHHHHHHHHHHHHc
Q 036158          190 TAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       190 ~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ||..+.++.+++..+.+.+...
T Consensus       324 SA~~~~nV~~vF~~v~~~i~~~  345 (353)
T 1cip_A          324 CATDTKNVQFVFDAVTDVIIKN  345 (353)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHH
T ss_pred             ECcCchhHHHHHHHHHHHHHHH
Confidence            5667799999999998777654

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.53  E-value=9e-07  Score=74.36  Aligned_cols=144  Identities=15%  Similarity=0.116  Sum_probs=78.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHh------CCccccccCCC---------------CCceeEEE-------------EEEE
Q 036158           18 GERNLVLVGRTGNGKSATANSIL------GKRAFKSKAGS---------------SGVTKTCE-------------MQRT   63 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~------~~~~~~~~~~~---------------~~~t~~~~-------------~~~~   63 (225)
                      +...|+++|++|+||||++..|.      |.++.-.....               .+......             ....
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a  175 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF  175 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence            46789999999999999998886      33321110000               00000000             0000


Q ss_pred             EeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEE
Q 036158           64 MLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVV  143 (225)
Q Consensus        64 ~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv  143 (225)
                      .. .+..+.|+||||..... .+.....++.......  .++.+++|+|+...  .......+.+.+..     .+..+|
T Consensus       176 ~~-~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~--~pd~vlLVlDa~~g--q~a~~~a~~f~~~~-----~~~gVI  244 (433)
T 3kl4_A          176 VK-NKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVL--KPDDVILVIDASIG--QKAYDLASRFHQAS-----PIGSVI  244 (433)
T ss_dssp             TT-TTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHH--CCSEEEEEEEGGGG--GGGHHHHHHHHHHC-----SSEEEE
T ss_pred             Hh-cCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhh--CCcceEEEEeCccc--hHHHHHHHHHhccc-----CCcEEE
Confidence            01 24578999999975411 1223344444433222  46899999998633  22233444444332     567899


Q ss_pred             EecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeC
Q 036158          144 FTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDN  185 (225)
Q Consensus       144 ~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (225)
                      +||+|.....    ..         ..++....+.++.++..
T Consensus       245 lTKlD~~a~~----G~---------als~~~~~g~Pi~fig~  273 (433)
T 3kl4_A          245 ITKMDGTAKG----GG---------ALSAVVATGATIKFIGT  273 (433)
T ss_dssp             EECGGGCSCH----HH---------HHHHHHHHTCEEEEEEC
T ss_pred             Eecccccccc----hH---------HHHHHHHHCCCEEEEEC
Confidence            9999965321    11         23445556777665544

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=98.47  E-value=1.1e-06  Score=72.24  Aligned_cols=83  Identities=17%  Similarity=0.195  Sum_probs=54.5

Q ss_pred             eeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC---------CHHHHHHH
Q 036158           55 TKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRF---------SEEEGAAI  125 (225)
Q Consensus        55 t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~---------~~~~~~~~  125 (225)
                      |.......+.+ ++..+.+|||+|..           ..+..+..++.+++++|||+|+++ +         ...-.+..
T Consensus       188 T~Gi~~~~~~~-~~~~l~i~Dt~Gq~-----------~~r~~w~~~f~~~~~iIfv~dls~-~dq~l~ed~~~n~~~es~  254 (362)
T 1zcb_A          188 TKGIHEYDFEI-KNVPFKMVDVGGQR-----------SERKRWFECFDSVTSILFLVSSSE-FDQVLMEDRQTNRLTESL  254 (362)
T ss_dssp             CSSEEEEEEEE-TTEEEEEEEECC------------------CTTSCTTCCEEEEEEETTC-TTCEETTEEEEEHHHHHH
T ss_pred             ccceEEEEeee-CCeEEEEEeccchh-----------hhhhhHHHHhCCCCEEEEEEECcc-ccccccccccccHHHHHH
Confidence            44555566777 78899999999964           334555678889999999999973 1         12233445


Q ss_pred             HHHHHHhccc--ccccEEEEEecCCCC
Q 036158          126 HILESLFGKK--ISDYMIVVFTGGDEL  150 (225)
Q Consensus       126 ~~l~~~~~~~--~~~~~~vv~~k~D~~  150 (225)
                      .++.......  ...|+++++||.|+.
T Consensus       255 ~~~~~i~~~~~~~~~piILv~NK~DL~  281 (362)
T 1zcb_A          255 NIFETIVNNRVFSNVSIILFLNKTDLL  281 (362)
T ss_dssp             HHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred             HHHHHHhcchhhCCCCEEEEEEChhhh
Confidence            5555554432  247999999999975

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.40  E-value=1.3e-05  Score=65.15  Aligned_cols=145  Identities=16%  Similarity=0.119  Sum_probs=76.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcccccc------CCC-C-Cc---------eeEEEEEEEE---------------
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSK------AGS-S-GV---------TKTCEMQRTM---------------   64 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~------~~~-~-~~---------t~~~~~~~~~---------------   64 (225)
                      .+.-.|+++|++|+||||+++.|.+.......      ... . +.         .....+....               
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~  206 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH  206 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence            44678999999999999999998764321000      000 0 00         0000000000               


Q ss_pred             -eeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEE
Q 036158           65 -LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVV  143 (225)
Q Consensus        65 -~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv  143 (225)
                       ...+..+.++||+|......   ....++.......  .+|-.++++|+...  .   ..++.++.+...  .....++
T Consensus       207 ~~~~~~d~vliDtaG~~~~~~---~l~~eL~~i~ral--~~de~llvLDa~t~--~---~~~~~~~~~~~~--~~it~ii  274 (328)
T 3e70_C          207 AKARGIDVVLIDTAGRSETNR---NLMDEMKKIARVT--KPNLVIFVGDALAG--N---AIVEQARQFNEA--VKIDGII  274 (328)
T ss_dssp             HHHHTCSEEEEEECCSCCTTT---CHHHHHHHHHHHH--CCSEEEEEEEGGGT--T---HHHHHHHHHHHH--SCCCEEE
T ss_pred             HHhccchhhHHhhccchhHHH---HHHHHHHHHHHHh--cCCCCEEEEecHHH--H---HHHHHHHHHHHh--cCCCEEE
Confidence             00123577899999864322   2333333322111  36889999997633  2   233333332111  1456899


Q ss_pred             EecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCC
Q 036158          144 FTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK  186 (225)
Q Consensus       144 ~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (225)
                      +||.|.....             -.+..+....+.++.++...
T Consensus       275 lTKlD~~a~~-------------G~~l~~~~~~~~pi~~i~~G  304 (328)
T 3e70_C          275 LTKLDADARG-------------GAALSISYVIDAPILFVGVG  304 (328)
T ss_dssp             EECGGGCSCC-------------HHHHHHHHHHTCCEEEEECS
T ss_pred             EeCcCCccch-------------hHHHHHHHHHCCCEEEEeCC
Confidence            9999963321             11345666667777776654

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.40  E-value=1.6e-05  Score=63.89  Aligned_cols=145  Identities=14%  Similarity=0.107  Sum_probs=76.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcccc------ccCCC-C-Cc---------eeEEEEEEEE----------------
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFK------SKAGS-S-GV---------TKTCEMQRTM----------------   64 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~------~~~~~-~-~~---------t~~~~~~~~~----------------   64 (225)
                      +.-.|+++|++||||||+++.|.+.....      ..... . +.         .....+....                
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~  180 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM  180 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999987432110      00000 0 00         0000000000                


Q ss_pred             eeCCceEEEEeCCCCCCCCCCcHHHHHHH---HHHHh-hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccE
Q 036158           65 LKDGQVVNVIDTPGLFDSSADSEFVSKEI---VKCIG-MTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYM  140 (225)
Q Consensus        65 ~~~~~~~~liDtPG~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  140 (225)
                      ...+..+.++||+|.....   .....++   +..+. .....++.+++++|+..+  ......+..+.+..     ...
T Consensus       181 ~~~~~d~~llDt~G~~~~~---~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~--~~~~~~~~~~~~~~-----~~t  250 (304)
T 1rj9_A          181 KARGYDLLFVDTAGRLHTK---HNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG--QNGLEQAKKFHEAV-----GLT  250 (304)
T ss_dssp             HHHTCSEEEECCCCCCTTC---HHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBC--THHHHHHHHHHHHH-----CCS
T ss_pred             HhCCCCEEEecCCCCCCch---HHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHH--HHHHHHHHHHHHHc-----CCc
Confidence            0012357799999986432   2222222   22222 234567888889997633  22333333333321     456


Q ss_pred             EEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeC
Q 036158          141 IVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDN  185 (225)
Q Consensus       141 ~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (225)
                      .+++||.|.....             -.+-.+....+.+..++..
T Consensus       251 ~iivTh~d~~a~g-------------g~~l~i~~~~~~pi~~ig~  282 (304)
T 1rj9_A          251 GVIVTKLDGTAKG-------------GVLIPIVRTLKVPIKFVGV  282 (304)
T ss_dssp             EEEEECTTSSCCC-------------TTHHHHHHHHCCCEEEEEC
T ss_pred             EEEEECCcccccc-------------cHHHHHHHHHCCCeEEEeC
Confidence            8999999854221             1134566667777777654

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.36  E-value=2e-06  Score=73.15  Aligned_cols=147  Identities=11%  Similarity=0.117  Sum_probs=79.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcc------ccccCCCCCc-----------eeEEEEEEEE---------------
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRA------FKSKAGSSGV-----------TKTCEMQRTM---------------   64 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~------~~~~~~~~~~-----------t~~~~~~~~~---------------   64 (225)
                      ...-.|+|+|++|||||||++.|.+...      .-........           ...+.+....               
T Consensus       291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~  370 (503)
T 2yhs_A          291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA  370 (503)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence            4457899999999999999999875321      1000000000           0000010000               


Q ss_pred             -eeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH---hhc-CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccccc
Q 036158           65 -LKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI---GMT-KDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDY  139 (225)
Q Consensus        65 -~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  139 (225)
                       ...+..++|+||+|....   ...+..++.+..   ... ...++-++||+|+..+  ......++.+.+.+     ..
T Consensus       371 a~~~~~DvVLIDTaGrl~~---~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~-----~i  440 (503)
T 2yhs_A          371 AKARNIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAV-----GL  440 (503)
T ss_dssp             HHHTTCSEEEECCCCSCCC---HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHT-----CC
T ss_pred             HHhcCCCEEEEeCCCccch---hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhc-----CC
Confidence             012346889999997533   233333433332   211 2346889999998633  22233344444322     34


Q ss_pred             EEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCC
Q 036158          140 MIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK  186 (225)
Q Consensus       140 ~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (225)
                      ..+|+||.|.....             -.+..++..++.++.++...
T Consensus       441 tgvIlTKLD~takg-------------G~~lsi~~~~~~PI~fig~G  474 (503)
T 2yhs_A          441 TGITLTKLDGTAKG-------------GVIFSVADQFGIPIRYIGVG  474 (503)
T ss_dssp             SEEEEECGGGCSCC-------------THHHHHHHHHCCCEEEEECS
T ss_pred             CEEEEEcCCCcccc-------------cHHHHHHHHHCCCEEEEecC
Confidence            57899999953221             12455666777777776554

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.32  E-value=2.6e-06  Score=68.27  Aligned_cols=144  Identities=13%  Similarity=0.096  Sum_probs=74.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh------CCccccccCCCCCc-ee----------EEEEEE--------------E-Eee
Q 036158           19 ERNLVLVGRTGNGKSATANSIL------GKRAFKSKAGSSGV-TK----------TCEMQR--------------T-MLK   66 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~------~~~~~~~~~~~~~~-t~----------~~~~~~--------------~-~~~   66 (225)
                      ...|+++|++|+||||+++.|.      +.++.-........ +.          ......              + ...
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~  177 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL  177 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence            5678899999999999998876      33321111110000 00          000000              0 000


Q ss_pred             -CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEe
Q 036158           67 -DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFT  145 (225)
Q Consensus        67 -~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~  145 (225)
                       .+..++|+||||.... ...+.+..++.....  ...+|.+++|+++...  ......++.+.+    . .....+|+|
T Consensus       178 ~~~~D~ViIDTpg~~~~-~~~~~l~~el~~i~~--~~~~d~vllVvda~~g--~~~~~~~~~~~~----~-~~i~gvVln  247 (297)
T 1j8m_F          178 SEKMEIIIVDTAGRHGY-GEEAALLEEMKNIYE--AIKPDEVTLVIDASIG--QKAYDLASKFNQ----A-SKIGTIIIT  247 (297)
T ss_dssp             HTTCSEEEEECCCSCCT-TCHHHHHHHHHHHHH--HHCCSEEEEEEEGGGG--GGHHHHHHHHHH----T-CTTEEEEEE
T ss_pred             hCCCCEEEEeCCCCccc-ccHHHHHHHHHHHHH--HhcCCEEEEEeeCCch--HHHHHHHHHHHh----h-CCCCEEEEe
Confidence             3457999999997641 122333333332211  1157999999998632  222223332222    1 133788999


Q ss_pred             cCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeC
Q 036158          146 GGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDN  185 (225)
Q Consensus       146 k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (225)
                      |+|.....    .         ...++....+.++.++..
T Consensus       248 k~D~~~~~----g---------~~~~~~~~~~~pi~~i~~  274 (297)
T 1j8m_F          248 KMDGTAKG----G---------GALSAVAATGATIKFIGT  274 (297)
T ss_dssp             CGGGCTTH----H---------HHHHHHHTTTCCEEEEEC
T ss_pred             CCCCCcch----H---------HHHHHHHHHCcCEEEEeC
Confidence            99964321    1         133456666777666544

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=98.31  E-value=7.3e-06  Score=69.02  Aligned_cols=123  Identities=16%  Similarity=0.116  Sum_probs=66.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHh-------CCccccccCCCCCc-e----------eEEEEEE--------------E-
Q 036158           17 NGERNLVLVGRTGNGKSATANSIL-------GKRAFKSKAGSSGV-T----------KTCEMQR--------------T-   63 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~-------~~~~~~~~~~~~~~-t----------~~~~~~~--------------~-   63 (225)
                      .+...|+++|++|+||||+...|.       |.++.-........ .          .......              + 
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~  177 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK  177 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence            445789999999999999998876       55442211111000 0          0000000              0 


Q ss_pred             Eee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEE
Q 036158           64 MLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIV  142 (225)
Q Consensus        64 ~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v  142 (225)
                      ... .+..++|+||||....   ......++.....  ...++.+++|+++....  .....++.+.    .. ....-+
T Consensus       178 ~~~~~~~D~VIIDTpG~l~~---~~~l~~~L~~~~~--~~~p~~vllVvda~~g~--~~~~~~~~f~----~~-l~i~gv  245 (433)
T 2xxa_A          178 EAKLKFYDVLLVDTAGRLHV---DEAMMDEIKQVHA--SINPVETLFVVDAMTGQ--DAANTAKAFN----EA-LPLTGV  245 (433)
T ss_dssp             HHHHTTCSEEEEECCCCCTT---CHHHHHHHHHHHH--HSCCSEEEEEEETTBCT--THHHHHHHHH----HH-SCCCCE
T ss_pred             HHHhCCCCEEEEECCCcccc---cHHHHHHHHHHHH--hhcCcceeEEeecchhH--HHHHHHHHHh----cc-CCCeEE
Confidence            001 3557999999997543   2333444433321  22679999999986432  2222222222    21 122457


Q ss_pred             EEecCCCCC
Q 036158          143 VFTGGDELE  151 (225)
Q Consensus       143 v~~k~D~~~  151 (225)
                      |+||+|...
T Consensus       246 VlnK~D~~~  254 (433)
T 2xxa_A          246 VLTKVDGDA  254 (433)
T ss_dssp             EEECTTSSS
T ss_pred             EEecCCCCc
Confidence            999999653

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=98.25  E-value=1.5e-05  Score=66.96  Aligned_cols=125  Identities=18%  Similarity=0.192  Sum_probs=69.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhC-----------------CccccccCCCCCceeEEEEEE----EEeeCC--ceEEE
Q 036158           17 NGERNLVLVGRTGNGKSATANSILG-----------------KRAFKSKAGSSGVTKTCEMQR----TMLKDG--QVVNV   73 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~-----------------~~~~~~~~~~~~~t~~~~~~~----~~~~~~--~~~~l   73 (225)
                      .+...|+|+|..++|||+|+|.|++                 ...|...+...+.|...-...    ...+.+  ..+.|
T Consensus        65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll  144 (457)
T 4ido_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL  144 (457)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred             CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence            4667888999999999999997752                 234444444444555543321    222233  36999


Q ss_pred             EeCCCCCCCCCCcHHHHHHHHH-HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHH---hccc----ccccEEEEEe
Q 036158           74 IDTPGLFDSSADSEFVSKEIVK-CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESL---FGKK----ISDYMIVVFT  145 (225)
Q Consensus        74 iDtPG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~---~~~~----~~~~~~vv~~  145 (225)
                      +||.|+.+.....+ ....|.. .+...    ..+||=...  .+...+.+.+..+.++   ...+    ..+..+.++-
T Consensus       145 lDTEG~~d~~~~~~-~d~~ifaLa~LLS----S~~IyN~~~--~i~~~~L~~L~~~tel~~~i~~~~~~~~Fp~f~wlvR  217 (457)
T 4ido_A          145 MDTQGTFDSQSTLR-DSATVFALSTMIS----SIQVYNLSQ--NVQEDDLQHLQLFTEYGRLAMEETFLKPFQSLIFLVR  217 (457)
T ss_dssp             EEECCBTCTTCCHH-HHHHHHHHHHHHC----SEEEEEEES--SCCHHHHHHHHHHHHHHHHHSCCCSSCSEEEEEEEEE
T ss_pred             EeccCCCCcccCcc-ccHHHHHHHHHHh----hheeecccc--cCCHHHHHHHHHHHHHHHHHhhhcccccCCceEEEEe
Confidence            99999997755432 2222221 11122    555554443  5666666666555443   2221    1234566666


Q ss_pred             cCC
Q 036158          146 GGD  148 (225)
Q Consensus       146 k~D  148 (225)
                      -+-
T Consensus       218 Df~  220 (457)
T 4ido_A          218 DWS  220 (457)
T ss_dssp             TCC
T ss_pred             cCC
Confidence            554

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.23  E-value=3.4e-07  Score=73.60  Aligned_cols=59  Identities=27%  Similarity=0.360  Sum_probs=34.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCC------CCceeEEEEEEEEeeCCceEEEEeCCCCCCC
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGS------SGVTKTCEMQRTMLKDGQVVNVIDTPGLFDS   82 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (225)
                      .-.++|+|++|+|||||+|+|.+.....++...      ..+|+....  +.. .  ...++||||+..+
T Consensus       173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~--~~~-~--~g~v~dtpg~~~~  237 (307)
T 1t9h_A          173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL--IHT-S--GGLVADTPGFSSL  237 (307)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCE--EEE-T--TEEEESSCSCSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHH--hhc-C--CEEEecCCCcccc
Confidence            458999999999999999999987643332222      123332222  222 2  3478999998754

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.21  E-value=7.6e-06  Score=65.79  Aligned_cols=96  Identities=15%  Similarity=0.094  Sum_probs=53.8

Q ss_pred             CceEEEEeCCCCCCCCCCcHHHHHHHHHHH---hh-cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEE
Q 036158           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCI---GM-TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVV  143 (225)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv  143 (225)
                      +..+.|+||||..   .....+..++....   .. ....++.+++|+++..+     ...+...+.+. .. ....-+|
T Consensus       186 ~~dvvIiDtpg~~---~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~-----~~~l~~a~~~~-~~-~~i~gvV  255 (306)
T 1vma_A          186 NKDVVIIDTAGRL---HTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG-----QNGLVQAKIFK-EA-VNVTGII  255 (306)
T ss_dssp             TCSEEEEEECCCC---SCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH-----HHHHHHHHHHH-HH-SCCCEEE
T ss_pred             CCCEEEEECCCch---hhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-----HHHHHHHHHHH-hc-CCCCEEE
Confidence            3469999999953   23344444443322   22 12357899999998621     12333333321 11 2445678


Q ss_pred             EecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCC
Q 036158          144 FTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK  186 (225)
Q Consensus       144 ~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (225)
                      +||.|.....             -.+.++....+.++.++...
T Consensus       256 lTk~D~~~~g-------------G~~l~~~~~~~~Pi~~i~~G  285 (306)
T 1vma_A          256 LTKLDGTAKG-------------GITLAIARELGIPIKFIGVG  285 (306)
T ss_dssp             EECGGGCSCT-------------THHHHHHHHHCCCEEEEECS
T ss_pred             EeCCCCccch-------------HHHHHHHHHHCCCEEEEeCC
Confidence            9999964332             11455666778777776553

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=98.13  E-value=2.1e-05  Score=65.38  Aligned_cols=84  Identities=14%  Similarity=0.152  Sum_probs=57.7

Q ss_pred             eeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCC--C------CCHHHHHHHH
Q 036158           55 TKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRN--R------FSEEEGAAIH  126 (225)
Q Consensus        55 t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~--~------~~~~~~~~~~  126 (225)
                      |.......+.+ ++..+.+|||+|...           ++..+..++.+++++|||+|+++  .      -...-.+...
T Consensus       204 TiGi~~~~~~~-~~v~l~iwDtaGQe~-----------~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~  271 (402)
T 1azs_C          204 TSGIFETKFQV-DKVNFHMFDVGGQRD-----------ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALN  271 (402)
T ss_dssp             CCSEEEEEEEE-TTEEEEEEEECCSGG-----------GGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHH
T ss_pred             eeeeEEEEeec-CCccceecccchhhh-----------hhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHH
Confidence            44455566777 678999999999643           34555678889999999999973  0      0122334555


Q ss_pred             HHHHHhccc--ccccEEEEEecCCCC
Q 036158          127 ILESLFGKK--ISDYMIVVFTGGDEL  150 (225)
Q Consensus       127 ~l~~~~~~~--~~~~~~vv~~k~D~~  150 (225)
                      ++.++....  ...|++++.||+|+.
T Consensus       272 ~~~~i~~~~~~~~~piiLvgNK~DL~  297 (402)
T 1azs_C          272 LFKSIWNNRWLRTISVILFLNKQDLL  297 (402)
T ss_dssp             HHHHHHTCTTCSSCCEEEEEECHHHH
T ss_pred             HHHHHHhcccCCCCeEEEEEEChhhh
Confidence            666654432  346899999999964

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.09  E-value=4.4e-05  Score=62.64  Aligned_cols=147  Identities=12%  Similarity=0.177  Sum_probs=76.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcccc------ccCCCCCc-------e----eEEEEEEEEe--------------
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFK------SKAGSSGV-------T----KTCEMQRTML--------------   65 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~------~~~~~~~~-------t----~~~~~~~~~~--------------   65 (225)
                      .+.-.|+++|++||||||+++.|.+.....      ........       +    ....+.....              
T Consensus       155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~  234 (359)
T 2og2_A          155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK  234 (359)
T ss_dssp             SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHH
Confidence            345689999999999999999987642110      00000000       0    0011111000              


Q ss_pred             ---eCCceEEEEeCCCCCCCCCCcHHHHHHHH---HHH-hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccc
Q 036158           66 ---KDGQVVNVIDTPGLFDSSADSEFVSKEIV---KCI-GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISD  138 (225)
Q Consensus        66 ---~~~~~~~liDtPG~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~  138 (225)
                         ..+....++||.|.....   +....++.   ..+ ......++-+++|+|....++...  .+..+.+..     .
T Consensus       235 ~~~~~~~d~~lldt~Gl~~~~---~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~--~~~~~~~~~-----g  304 (359)
T 2og2_A          235 RGKEEGYDVVLCDTSGRLHTN---YSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVV-----G  304 (359)
T ss_dssp             HHHHTTCSEEEEECCCCSSCC---HHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHT-----C
T ss_pred             HHHhCCCHHHHHHhcCCChhh---hhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHH--HHHHHHHhc-----C
Confidence               012346899999986432   22223232   122 223456787788888654444332  233333211     3


Q ss_pred             cEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCC
Q 036158          139 YMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK  186 (225)
Q Consensus       139 ~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (225)
                      ...+++||.|.....    -         ..-.+....+.++.++...
T Consensus       305 ~t~iiiThlD~~~~g----G---------~~lsi~~~~~~pI~~ig~G  339 (359)
T 2og2_A          305 ITGLILTKLDGSARG----G---------CVVSVVEELGIPVKFIGVG  339 (359)
T ss_dssp             CCEEEEESCTTCSCT----H---------HHHHHHHHHCCCEEEEECS
T ss_pred             CeEEEEecCcccccc----c---------HHHHHHHHhCCCEEEEeCC
Confidence            568899998854322    1         1334556667777776554

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.09  E-value=4.8e-05  Score=61.00  Aligned_cols=147  Identities=13%  Similarity=0.195  Sum_probs=76.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcccc------ccCCCCCc-------e----eEEEEEEEEe--------------
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFK------SKAGSSGV-------T----KTCEMQRTML--------------   65 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~------~~~~~~~~-------t----~~~~~~~~~~--------------   65 (225)
                      .+.-.++++|++||||||+++.|.+.....      ........       +    ....+.....              
T Consensus        98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~  177 (302)
T 3b9q_A           98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK  177 (302)
T ss_dssp             SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHH
Confidence            345689999999999999999987542110      00000000       0    0011110000              


Q ss_pred             ---eCCceEEEEeCCCCCCCCCCcHHHHHHHH---HHHh-hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccc
Q 036158           66 ---KDGQVVNVIDTPGLFDSSADSEFVSKEIV---KCIG-MTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISD  138 (225)
Q Consensus        66 ---~~~~~~~liDtPG~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~  138 (225)
                         ..+....++||.|.....   +....++.   ..+. .....++-+++|+|....++...  .+..+.+..     .
T Consensus       178 ~~~~~~~d~~lldt~gl~~~~---~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~--~~~~~~~~~-----g  247 (302)
T 3b9q_A          178 RGKEEGYDVVLCDTSGRLHTN---YSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVV-----G  247 (302)
T ss_dssp             HHHHTTCSEEEECCCCCSSCC---HHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHT-----C
T ss_pred             HHHHcCCcchHHhcCCCCcch---hHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHH--HHHHHHHhc-----C
Confidence               012346789999986432   22233332   2222 23346787788888654444332  233333211     3


Q ss_pred             cEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCC
Q 036158          139 YMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK  186 (225)
Q Consensus       139 ~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (225)
                      ..++++||.|.....    .         ..-.+....+.++.++.+.
T Consensus       248 ~t~iiiThlD~~~~~----g---------~~l~~~~~~~~pi~~i~~G  282 (302)
T 3b9q_A          248 ITGLILTKLDGSARG----G---------CVVSVVEELGIPVKFIGVG  282 (302)
T ss_dssp             CCEEEEECCSSCSCT----H---------HHHHHHHHHCCCEEEEECS
T ss_pred             CCEEEEeCCCCCCcc----C---------hheehHHHHCCCEEEEeCC
Confidence            568899998854321    1         1344556667777776553

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.08  E-value=2e-06  Score=68.87  Aligned_cols=141  Identities=16%  Similarity=0.148  Sum_probs=72.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCc-------cccccCCCCCcee-----------EEEEEE-----------EEeeCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKR-------AFKSKAGSSGVTK-----------TCEMQR-----------TMLKDG   68 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~-------~~~~~~~~~~~t~-----------~~~~~~-----------~~~~~~   68 (225)
                      +...|+++|++|+||||++..|.+.-       +.-........+.           ......           ... .+
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~~  182 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-SE  182 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-GG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-cC
Confidence            45689999999999999998875322       1100000000000           000000           011 34


Q ss_pred             ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCC
Q 036158           69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGD  148 (225)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D  148 (225)
                      ..+.|+||||....   ......++...+.  ...++.+++|+++...  ..   .+..+.+.+..  ....-+|+||.|
T Consensus       183 ~dlvIiDT~G~~~~---~~~~~~el~~~l~--~~~~~~~~lVl~at~~--~~---~~~~~~~~~~~--l~~~giVltk~D  250 (296)
T 2px0_A          183 YDHVFVDTAGRNFK---DPQYIDELKETIP--FESSIQSFLVLSATAK--YE---DMKHIVKRFSS--VPVNQYIFTKID  250 (296)
T ss_dssp             SSEEEEECCCCCTT---SHHHHHHHHHHSC--CCTTEEEEEEEETTBC--HH---HHHHHTTTTSS--SCCCEEEEECTT
T ss_pred             CCEEEEeCCCCChh---hHHHHHHHHHHHh--hcCCCeEEEEEECCCC--HH---HHHHHHHHHhc--CCCCEEEEeCCC
Confidence            57999999998743   2333333333321  2246788999988632  11   22222233321  134567889999


Q ss_pred             CCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEee
Q 036158          149 ELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFD  184 (225)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (225)
                      .....             ..+.++....+.++.++.
T Consensus       251 ~~~~~-------------g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          251 ETTSL-------------GSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             TCSCC-------------HHHHHHHHTCSCCCSEEC
T ss_pred             cccch-------------hHHHHHHHHHCcCEEEEE
Confidence            65332             114456666676655544

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.08  E-value=4e-05  Score=62.00  Aligned_cols=95  Identities=21%  Similarity=0.205  Sum_probs=52.7

Q ss_pred             CceEEEEeCCCCCCCCCCcHHHHHHHHH---HHhh-cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEE
Q 036158           68 GQVVNVIDTPGLFDSSADSEFVSKEIVK---CIGM-TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVV  143 (225)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv  143 (225)
                      +..++|+||||....   .+....++..   .+.. ....+|.+++|+++...  .   ..+..++. |... ....-+|
T Consensus       191 ~yD~VIIDTpg~l~~---~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~---~~l~~~~~-~~~~-~~i~GvV  260 (320)
T 1zu4_A          191 NYDLLLIDTAGRLQN---KTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--Q---NGVIQAEE-FSKV-ADVSGII  260 (320)
T ss_dssp             TCSEEEEECCCCGGG---HHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--H---HHHHHHHH-HTTT-SCCCEEE
T ss_pred             CCCEEEEcCCCcccc---cHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--H---HHHHHHHH-Hhhc-CCCcEEE
Confidence            457999999996532   2223333322   2221 22357999999998622  2   23344444 3222 2345689


Q ss_pred             EecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeC
Q 036158          144 FTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDN  185 (225)
Q Consensus       144 ~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (225)
                      +||.|.....             ..+.++....+.++.++..
T Consensus       261 ltk~d~~~~~-------------g~~~~~~~~~~~Pi~~i~~  289 (320)
T 1zu4_A          261 LTKMDSTSKG-------------GIGLAIKELLNIPIKMIGV  289 (320)
T ss_dssp             EECGGGCSCT-------------THHHHHHHHHCCCEEEEEC
T ss_pred             EeCCCCCCch-------------hHHHHHHHHHCcCEEEEeC
Confidence            9999964321             1144566667777766654

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.04  E-value=7.8e-06  Score=65.64  Aligned_cols=59  Identities=22%  Similarity=0.259  Sum_probs=36.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCC------CceeEEEEEEEEeeCCceEEEEeCCCCCCC
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSS------GVTKTCEMQRTMLKDGQVVNVIDTPGLFDS   82 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (225)
                      ...++++|++|+|||||+|+|. .....++....      .+|+....  ... . ..-.++||||+...
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~--~~~-~-~~g~v~d~pg~~~~  229 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRL--IPF-G-KGSFVGDTPGFSKV  229 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEE--EEE-T-TTEEEESSCCCSSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEE--EEc-C-CCcEEEECcCcCcC
Confidence            3578999999999999999999 55433322221      12332222  222 1 23478999998643

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=98.04  E-value=3.7e-05  Score=63.02  Aligned_cols=72  Identities=11%  Similarity=0.157  Sum_probs=47.5

Q ss_pred             CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCC--------CCCCHHHHHHHHHHHHHhccc--cc
Q 036158           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVR--------NRFSEEEGAAIHILESLFGKK--IS  137 (225)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~--------~~~~~~~~~~~~~l~~~~~~~--~~  137 (225)
                      ...+.+|||+|....           +..+..++.+++++|+|+|++        +.-...-.+...++.+.....  ..
T Consensus       182 ~v~l~iwDtaGQe~~-----------r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~  250 (354)
T 2xtz_A          182 GEVYRLFDVGGQRNE-----------RRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK  250 (354)
T ss_dssp             --EEEEEEECCSTTG-----------GGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSS
T ss_pred             ceeeEEEECCCchhh-----------hHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCC
Confidence            358999999997533           344557888999999999985        111122234445555554332  34


Q ss_pred             ccEEEEEecCCCC
Q 036158          138 DYMIVVFTGGDEL  150 (225)
Q Consensus       138 ~~~~vv~~k~D~~  150 (225)
                      .|++++.||+|+.
T Consensus       251 ~piiLvgNK~DL~  263 (354)
T 2xtz_A          251 TSFMLFLNKFDIF  263 (354)
T ss_dssp             CEEEEEEECHHHH
T ss_pred             CeEEEEEECcchh
Confidence            7999999999964

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.01  E-value=6.3e-05  Score=63.05  Aligned_cols=72  Identities=22%  Similarity=0.293  Sum_probs=40.7

Q ss_pred             CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 036158           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTG  146 (225)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k  146 (225)
                      .+..++|+||||....   ......++.......  .+|.+++|+|+...  ..   .+..++. |... ....-+|+||
T Consensus       179 ~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~--~pd~vlLVvDa~tg--q~---av~~a~~-f~~~-l~i~GVIlTK  246 (425)
T 2ffh_A          179 EARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--QE---ALSVARA-FDEK-VGVTGLVLTK  246 (425)
T ss_dssp             TTCSEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--TH---HHHHHHH-HHHH-TCCCEEEEES
T ss_pred             CCCCEEEEcCCCcccc---cHHHHHHHHHhhhcc--CCceEEEEEeccch--HH---HHHHHHH-HHhc-CCceEEEEeC
Confidence            3456999999997643   233333333322222  57889999998632  22   2233332 2221 1346789999


Q ss_pred             CCCC
Q 036158          147 GDEL  150 (225)
Q Consensus       147 ~D~~  150 (225)
                      .|..
T Consensus       247 lD~~  250 (425)
T 2ffh_A          247 LDGD  250 (425)
T ss_dssp             GGGC
T ss_pred             cCCc
Confidence            9964

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.99  E-value=3.7e-06  Score=68.87  Aligned_cols=58  Identities=31%  Similarity=0.543  Sum_probs=35.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCcc-ccccCCCC--C----ceeEEEEEEEEeeCCceEEEEeCCCCCC
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRA-FKSKAGSS--G----VTKTCEMQRTMLKDGQVVNVIDTPGLFD   81 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~-~~~~~~~~--~----~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (225)
                      -.++|+|++|+|||||+|.|.|... ..++....  +    +|+....  ..++.+  ..++||||+.+
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i--~~v~q~--~~l~dtpgv~e  280 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARL--YHFPHG--GDVIDSPGVRE  280 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEE--EECTTS--CEEEECHHHHT
T ss_pred             CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEE--EEECCC--CEecCcccHHH
Confidence            4789999999999999999998765 33322111  1    1222222  223222  35799999754

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.94  E-value=8.5e-06  Score=65.37  Aligned_cols=60  Identities=25%  Similarity=0.277  Sum_probs=36.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCC------CceeEEEEEEEEeeCCceEEEEeCCCCCCC
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSS------GVTKTCEMQRTMLKDGQVVNVIDTPGLFDS   82 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (225)
                      .-.++++|++|+|||||+|+|.|......+....      .+|.....  ...  .....++|+||+...
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~--~~~--~~~g~v~q~p~~~~~  234 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQL--LKF--DFGGYVVDTPGFANL  234 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCE--EEC--TTSCEEESSCSSTTC
T ss_pred             CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEE--EEc--CCCCEEEECcCCCcc
Confidence            3578999999999999999999876543322211      12222211  122  123478999997644

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.77  E-value=0.00018  Score=57.43  Aligned_cols=93  Identities=16%  Similarity=0.173  Sum_probs=51.3

Q ss_pred             CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 036158           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGG  147 (225)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~  147 (225)
                      +..++|+||||....   +.....++.......  .++.+++|+++..  ...   .++.++.+ ... ....-+|+||.
T Consensus       180 ~~D~viiDtpp~~~~---d~~~~~~l~~~~~~~--~~~~~~lv~~~~~--~~~---~~~~~~~~-~~~-~~i~givlnk~  247 (295)
T 1ls1_A          180 ARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMT--GQE---ALSVARAF-DEK-VGVTGLVLTKL  247 (295)
T ss_dssp             TCCEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGG--THH---HHHHHHHH-HHH-TCCCEEEEECG
T ss_pred             CCCEEEEeCCCCccc---cHHHHHHHHHHhhhc--CCCEEEEEEeCCC--cHH---HHHHHHHH-hhc-CCCCEEEEECC
Confidence            346999999986533   233344444433322  4688889999862  222   33333332 111 13456899999


Q ss_pred             CCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeC
Q 036158          148 DELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDN  185 (225)
Q Consensus       148 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (225)
                      |.....             ..+.++....+.++.++..
T Consensus       248 d~~~~~-------------g~~~~~~~~~~~pi~~i~~  272 (295)
T 1ls1_A          248 DGDARG-------------GAALSARHVTGKPIYFAGV  272 (295)
T ss_dssp             GGCSSC-------------HHHHHHHHHHCCCEEEEC-
T ss_pred             CCCccH-------------HHHHHHHHHHCcCEEEEeC
Confidence            964322             1134556666777666543

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.66  E-value=2.8e-06  Score=63.83  Aligned_cols=27  Identities=37%  Similarity=0.752  Sum_probs=22.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      .+...|+|+|++|+|||||++.|++..
T Consensus        17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           17 QGRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            345678999999999999999998654

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.58  E-value=2.9e-05  Score=57.40  Aligned_cols=24  Identities=21%  Similarity=0.506  Sum_probs=21.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           20 RNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      .+++++|++|+|||||++.|.|..
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999998764

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.56  E-value=2.8e-05  Score=58.39  Aligned_cols=24  Identities=33%  Similarity=0.570  Sum_probs=20.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           19 ERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ...++|+|++|+|||||++.|.+.
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            356899999999999999999874

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=97.54  E-value=0.00011  Score=58.21  Aligned_cols=104  Identities=12%  Similarity=0.166  Sum_probs=58.0

Q ss_pred             EEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158           73 VIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED  152 (225)
Q Consensus        73 liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~  152 (225)
                      +-+.||+-.      +..+++..    ....+|+++.|+|+..+.+.....+-    ++++   .+|.++|+||+|+...
T Consensus         3 i~w~PGhm~------ka~~~~~~----~l~~aDvVl~VvDAr~p~~~~~~~l~----~~l~---~kp~ilVlNK~DL~~~   65 (282)
T 1puj_A            3 IQWFPGHMA------KARREVTE----KLKLIDIVYELVDARIPMSSRNPMIE----DILK---NKPRIMLLNKADKADA   65 (282)
T ss_dssp             ------CTT------HHHHHHHH----HGGGCSEEEEEEETTSTTTTSCHHHH----HHCS---SSCEEEEEECGGGSCH
T ss_pred             CcCCchHHH------HHHHHHHH----HHhhCCEEEEEEeCCCCCccCCHHHH----HHHC---CCCEEEEEECcccCCH
Confidence            445788742      23333433    44456999999999866655432222    2223   3899999999998753


Q ss_pred             CcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          153 NDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      .  ..    +.     |.+..+..+..++.+      |+.++.++++|++.+.+++.+
T Consensus        66 ~--~~----~~-----~~~~~~~~g~~~i~i------SA~~~~gi~~L~~~i~~~l~~  106 (282)
T 1puj_A           66 A--VT----QQ-----WKEHFENQGIRSLSI------NSVNGQGLNQIVPASKEILQE  106 (282)
T ss_dssp             H--HH----HH-----HHHHHHTTTCCEEEC------CTTTCTTGGGHHHHHHHHHHH
T ss_pred             H--HH----HH-----HHHHHHhcCCcEEEE------ECCCcccHHHHHHHHHHHHHH
Confidence            1  11    11     344444444444433      334557888888888777653

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.52  E-value=0.00014  Score=58.16  Aligned_cols=106  Identities=13%  Similarity=0.077  Sum_probs=60.5

Q ss_pred             CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccccEEEEEec
Q 036158           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRF-SEEEGAAIHILESLFGKKISDYMIVVFTG  146 (225)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~vv~~k  146 (225)
                      +..+.+|||  ...+.           .....++.++|++|+|+|++++. +...  +-+++.....  ...|+++|+||
T Consensus        62 ~~~~~iwD~--qer~~-----------~l~~~~~~~ad~vilV~D~~~~~~s~~~--l~~~l~~~~~--~~~piilv~NK  124 (301)
T 1u0l_A           62 TGSGVIENV--LHRKN-----------LLTKPHVANVDQVILVVTVKMPETSTYI--IDKFLVLAEK--NELETVMVINK  124 (301)
T ss_dssp             SSSEEEEEE--CCCSC-----------EETTTTEESCCEEEEEECSSTTCCCHHH--HHHHHHHHHH--TTCEEEEEECC
T ss_pred             CCeEEEEEE--ccccc-----------eeeccccccCCEEEEEEeCCCCCCCHHH--HHHHHHHHHH--CCCCEEEEEeH
Confidence            347999999  33221           11224677899999999998554 3322  2223322211  24799999999


Q ss_pred             CCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHH
Q 036158          147 GDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVN  205 (225)
Q Consensus       147 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~  205 (225)
                      +|+....  .+    .+     ..+..+..+..+    .....||+++.++++++..+.
T Consensus       125 ~DL~~~~--~v----~~-----~~~~~~~~~~~~----~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          125 MDLYDED--DL----RK-----VRELEEIYSGLY----PIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             GGGCCHH--HH----HH-----HHHHHHHHTTTS----CEEECCTTTCTTHHHHHHHHS
T ss_pred             HHcCCch--hH----HH-----HHHHHHHHhhhC----cEEEEECCCCcCHHHHHHHhc
Confidence            9976432  21    11     233333333111    122456677789998887763

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.47  E-value=5.4e-05  Score=55.84  Aligned_cols=24  Identities=33%  Similarity=0.659  Sum_probs=21.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           20 RNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      ..++|+|++|||||||++.|.+..
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            468999999999999999998743

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=97.46  E-value=0.00045  Score=56.88  Aligned_cols=101  Identities=8%  Similarity=0.055  Sum_probs=62.3

Q ss_pred             HHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158           92 EIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE  171 (225)
Q Consensus        92 ~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~  171 (225)
                      .+.+.+.......+++++|+|+.+.    +..+...+.+.++   .+|+++|+||+|+.+.. ...+...+     .++.
T Consensus        58 ~f~~~l~~i~~~~~~il~VvD~~d~----~~~~~~~l~~~~~---~~p~ilV~NK~DL~~~~-~~~~~~~~-----~l~~  124 (368)
T 3h2y_A           58 DFLRILNGIGKSDALVVKIVDIFDF----NGSWLPGLHRFVG---NNKVLLVGNKADLIPKS-VKHDKVKH-----WMRY  124 (368)
T ss_dssp             HHHHHHHHHHHSCCEEEEEEETTSH----HHHCCTTHHHHSS---SSCEEEEEECGGGSCTT-SCHHHHHH-----HHHH
T ss_pred             HHHHHHHHHhccCcEEEEEEECCCC----cccHHHHHHHHhC---CCcEEEEEEChhcCCcc-cCHHHHHH-----HHHH
Confidence            3445555555577899999999742    2334455566554   37999999999987543 11122111     1344


Q ss_pred             HHHHcCCcE-EEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          172 ILQLCDNRC-VLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       172 ~~~~~~~~~-~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      ..+..+.+. ..    ...||.++.++++|++.|.++..
T Consensus       125 ~~~~~g~~~~~v----~~iSA~~g~gi~~L~~~l~~~~~  159 (368)
T 3h2y_A          125 SAKQLGLKPEDV----FLISAAKGQGIAELADAIEYYRG  159 (368)
T ss_dssp             HHHHTTCCCSEE----EECCTTTCTTHHHHHHHHHHHHT
T ss_pred             HHHHcCCCcccE----EEEeCCCCcCHHHHHhhhhhhcc
Confidence            555556521 11    23456777999999999987653

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=97.45  E-value=0.00011  Score=55.51  Aligned_cols=108  Identities=6%  Similarity=-0.023  Sum_probs=61.3

Q ss_pred             HHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc---ccccEEEEEecC-CCCCCCcccHHHHhhhcCC
Q 036158           91 KEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK---ISDYMIVVFTGG-DELEDNDETLEDYLGRECP  166 (225)
Q Consensus        91 ~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~vv~~k~-D~~~~~~~~~~~~~~~~~~  166 (225)
                      ..++..|..++.++|++|||+|+.++--.+.++.+..+...+.++   ...|++|+.||. |....  ....+..+. +.
T Consensus       113 ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--ms~~EI~e~-L~  189 (227)
T 3l82_B          113 YSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAHE-LH  189 (227)
T ss_dssp             ----CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--CCHHHHHHH-TT
T ss_pred             HHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--CCHHHHHHH-cC
Confidence            346667777788889999999986442222344444444444332   246889889996 55332  244444333 11


Q ss_pred             chHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          167 KPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                        +..    ....++..    +++|.++.++.+-++++.+.+..+
T Consensus       190 --L~~----l~R~W~Iq----~csA~TGeGL~EGLdWL~~~l~~k  224 (227)
T 3l82_B          190 --LNL----LNHPWLVQ----DTEAETLTGFLNGIEWILEEVESK  224 (227)
T ss_dssp             --GGG----GCSCEEEE----EEETTTCTTHHHHHHHHTTTTTTC
T ss_pred             --CcC----CCCCEEEE----EeECCCCcCHHHHHHHHHHHHHhh
Confidence              112    12334433    345667899999999997665443

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.44  E-value=7.2e-05  Score=57.78  Aligned_cols=27  Identities=26%  Similarity=0.288  Sum_probs=23.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      +.-.++|+|++|||||||++.|.|...
T Consensus        30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~   56 (235)
T 3tif_A           30 EGEFVSIMGPSGSGKSTMLNIIGCLDK   56 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            345689999999999999999998764

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.40  E-value=7.3e-05  Score=56.41  Aligned_cols=27  Identities=26%  Similarity=0.310  Sum_probs=22.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      .+.-.++|+|++|||||||++.|.|..
T Consensus        18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           18 AVGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            344578999999999999999998754

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.39  E-value=8e-05  Score=55.77  Aligned_cols=25  Identities=12%  Similarity=0.351  Sum_probs=21.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      +.-.|+|+|++|||||||++.|.+.
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhh
Confidence            3457999999999999999999875

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.38  E-value=8.5e-05  Score=56.92  Aligned_cols=25  Identities=24%  Similarity=0.267  Sum_probs=22.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      -.++|+|++|||||||++.|.|...
T Consensus        31 e~~~iiG~nGsGKSTLl~~l~Gl~~   55 (224)
T 2pcj_A           31 EFVSIIGASGSGKSTLLYILGLLDA   55 (224)
T ss_dssp             CEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4688999999999999999998753

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.36  E-value=9e-05  Score=55.95  Aligned_cols=27  Identities=30%  Similarity=0.485  Sum_probs=23.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      .+...|+|+|++|||||||++.|.+..
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~   46 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAAL   46 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999998754

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.36  E-value=7.9e-05  Score=56.80  Aligned_cols=26  Identities=27%  Similarity=0.406  Sum_probs=22.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      +.-.++|+|++|||||||++.|.+..
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            34578999999999999999998754

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.36  E-value=0.0001  Score=56.97  Aligned_cols=27  Identities=26%  Similarity=0.420  Sum_probs=23.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      +.-.++|+|++|||||||++.|.|...
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   56 (237)
T 2cbz_A           30 EGALVAVVGQVGCGKSSLLSALLAEMD   56 (237)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            345789999999999999999998763

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.35  E-value=9e-05  Score=56.59  Aligned_cols=27  Identities=19%  Similarity=0.324  Sum_probs=22.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      .+.-.++|+|++|||||||++.|.+..
T Consensus        14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           14 AQGTLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhccC
Confidence            444679999999999999999998754

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.34  E-value=0.00011  Score=56.94  Aligned_cols=25  Identities=40%  Similarity=0.440  Sum_probs=22.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      -.++++|++|||||||++.|.|...
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~~   49 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4689999999999999999998753

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=97.34  E-value=9.1e-05  Score=61.08  Aligned_cols=101  Identities=11%  Similarity=0.055  Sum_probs=60.3

Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158           93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI  172 (225)
Q Consensus        93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (225)
                      +.+.+.......+++++|+|+.+...    .+...+.+.++   .+|+++|+||+|+.+.. ...+...+     .+++.
T Consensus        61 f~~~L~~~~~~~~lil~VvD~~d~~~----s~~~~l~~~l~---~~piilV~NK~DLl~~~-~~~~~~~~-----~l~~~  127 (369)
T 3ec1_A           61 FLSMLHRIGESKALVVNIVDIFDFNG----SFIPGLPRFAA---DNPILLVGNKADLLPRS-VKYPKLLR-----WMRRM  127 (369)
T ss_dssp             HHHHHHHHHHHCCEEEEEEETTCSGG----GCCSSHHHHCT---TSCEEEEEECGGGSCTT-CCHHHHHH-----HHHHH
T ss_pred             HHHHHHHhhccCcEEEEEEECCCCCC----chhhHHHHHhC---CCCEEEEEEChhcCCCc-cCHHHHHH-----HHHHH
Confidence            33444444456699999999974432    23333444444   37999999999987653 11121111     13445


Q ss_pred             HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          173 LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      .+..+.+..   .....||.++.++++|++.+.++..
T Consensus       128 ~~~~g~~~~---~v~~iSA~~g~gi~~L~~~I~~~~~  161 (369)
T 3ec1_A          128 AEELGLCPV---DVCLVSAAKGIGMAKVMEAINRYRE  161 (369)
T ss_dssp             HHTTTCCCS---EEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred             HHHcCCCcc---cEEEEECCCCCCHHHHHHHHHhhcc
Confidence            566665310   1123466778999999999987764

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.34  E-value=0.00014  Score=53.81  Aligned_cols=25  Identities=36%  Similarity=0.577  Sum_probs=22.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      +...|+|+|++||||||+++.|.+.
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhc
Confidence            3467999999999999999999876

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.33  E-value=0.00011  Score=58.09  Aligned_cols=26  Identities=23%  Similarity=0.281  Sum_probs=22.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .-.++|+|++|||||||++.|.|...
T Consensus        34 Ge~~~iiGpnGsGKSTLl~~l~Gl~~   59 (275)
T 3gfo_A           34 GEVTAILGGNGVGKSTLFQNFNGILK   59 (275)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            35689999999999999999998653

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.32  E-value=0.00011  Score=57.76  Aligned_cols=26  Identities=23%  Similarity=0.397  Sum_probs=22.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .-.++|+|++|||||||++.|.|...
T Consensus        37 Ge~~~liG~nGsGKSTLl~~l~Gl~~   62 (266)
T 4g1u_C           37 GEMVAIIGPNGAGKSTLLRLLTGYLS   62 (266)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            35689999999999999999998754

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.32  E-value=0.00012  Score=57.36  Aligned_cols=26  Identities=31%  Similarity=0.431  Sum_probs=22.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .-.++|+|++|||||||++.|.|...
T Consensus        33 Ge~~~liG~nGsGKSTLlk~l~Gl~~   58 (257)
T 1g6h_A           33 GDVTLIIGPNGSGKSTLINVITGFLK   58 (257)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            34689999999999999999998754

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.32  E-value=0.00012  Score=57.54  Aligned_cols=26  Identities=23%  Similarity=0.298  Sum_probs=22.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .-.++|+|++|||||||++.|.|...
T Consensus        32 Ge~~~liG~nGsGKSTLlk~l~Gl~~   57 (262)
T 1b0u_A           32 GDVISIIGSSGSGKSTFLRCINFLEK   57 (262)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            35689999999999999999998753

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.32  E-value=0.00012  Score=56.97  Aligned_cols=26  Identities=31%  Similarity=0.379  Sum_probs=22.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .-.++|+|++|||||||++.|.|...
T Consensus        35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~   60 (247)
T 2ff7_A           35 GEVIGIVGRSGSGKSTLTKLIQRFYI   60 (247)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            34689999999999999999998753

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.32  E-value=0.00011  Score=55.87  Aligned_cols=25  Identities=20%  Similarity=0.208  Sum_probs=22.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      -.++|+|++|||||||++.|.|...
T Consensus        36 e~~~iiG~NGsGKSTLlk~l~Gl~~   60 (214)
T 1sgw_A           36 NVVNFHGPNGIGKTTLLKTISTYLK   60 (214)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4688999999999999999998753

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.31  E-value=0.00012  Score=56.20  Aligned_cols=26  Identities=31%  Similarity=0.483  Sum_probs=22.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .-.++|+|++|||||||++.|.|...
T Consensus        34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~   59 (229)
T 2pze_A           34 GQLLAVAGSTGAGKTSLLMMIMGELE   59 (229)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            34689999999999999999998753

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.30  E-value=0.00022  Score=53.62  Aligned_cols=31  Identities=16%  Similarity=0.178  Sum_probs=25.7

Q ss_pred             CCCCCCCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           12 PTSPSNGERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        12 ~~~~~~~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      +.....+...|+|+|.+||||||+.+.|.+.
T Consensus        14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCCCSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             ccccCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3444556678999999999999999999875

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.29  E-value=0.00013  Score=57.24  Aligned_cols=26  Identities=23%  Similarity=0.324  Sum_probs=22.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .-.++|+|++|||||||++.|.|...
T Consensus        50 Gei~~liG~NGsGKSTLlk~l~Gl~~   75 (263)
T 2olj_A           50 GEVVVVIGPSGSGKSTFLRCLNLLED   75 (263)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence            35689999999999999999998753

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.29  E-value=0.00014  Score=56.37  Aligned_cols=26  Identities=31%  Similarity=0.507  Sum_probs=22.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .-.++|+|++|+|||||++.|.|...
T Consensus        32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~   57 (240)
T 1ji0_A           32 GQIVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            34689999999999999999998753

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.28  E-value=0.00023  Score=55.15  Aligned_cols=27  Identities=19%  Similarity=0.220  Sum_probs=23.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      +.-.++|+|++|||||||++.|.|...
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLERFYQ   53 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            445789999999999999999998754

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.28  E-value=0.00013  Score=53.28  Aligned_cols=23  Identities=35%  Similarity=0.495  Sum_probs=19.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhC
Q 036158           19 ERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .-.++++|++|||||||++.+.+
T Consensus         9 gei~~l~G~nGsGKSTl~~~~~~   31 (171)
T 4gp7_A            9 LSLVVLIGSSGSGKSTFAKKHFK   31 (171)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CEEEEEECCCCCCHHHHHHHHcc
Confidence            35689999999999999997653

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.27  E-value=0.00014  Score=56.83  Aligned_cols=26  Identities=27%  Similarity=0.293  Sum_probs=22.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .-.++|+|++|||||||++.|.|...
T Consensus        41 Gei~~l~G~NGsGKSTLlk~l~Gl~~   66 (256)
T 1vpl_A           41 GEIFGLIGPNGAGKTTTLRIISTLIK   66 (256)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            34689999999999999999998753

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.27  E-value=0.00015  Score=56.55  Aligned_cols=24  Identities=29%  Similarity=0.462  Sum_probs=21.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           19 ERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      .-.++|+|++|+|||||++.|.|.
T Consensus        29 Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           29 GEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            346899999999999999999996

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.27  E-value=0.00014  Score=56.56  Aligned_cols=25  Identities=36%  Similarity=0.488  Sum_probs=22.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      -.++|+|++|+|||||++.|.|...
T Consensus        27 e~~~liG~NGsGKSTLlk~l~Gl~~   51 (249)
T 2qi9_C           27 EILHLVGPNGAGKSTLLARMAGMTS   51 (249)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCC
Confidence            4689999999999999999998753

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.27  E-value=0.00014  Score=56.93  Aligned_cols=26  Identities=35%  Similarity=0.423  Sum_probs=22.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      +.-.++|+|++|||||||++.|.|..
T Consensus        45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           45 SGTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            34578999999999999999999865

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.26  E-value=0.00013  Score=55.01  Aligned_cols=25  Identities=20%  Similarity=0.274  Sum_probs=22.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      +...|+|+|++|||||||++.|.+.
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHH
Confidence            4467999999999999999999874

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.26  E-value=0.0023  Score=47.61  Aligned_cols=69  Identities=7%  Similarity=-0.015  Sum_probs=41.3

Q ss_pred             CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 036158           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGG  147 (225)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~  147 (225)
                      ...++|+|||+...     .    .....+.    .+|.+++++..+ ..+......++.+.+........++.+|+|+.
T Consensus        75 ~yD~viiD~~~~~~-----~----~~~~~l~----~ad~viiv~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~  140 (206)
T 4dzz_A           75 DYDFAIVDGAGSLS-----V----ITSAAVM----VSDLVIIPVTPS-PLDFSAAGSVVTVLEAQAYSRKVEARFLITRK  140 (206)
T ss_dssp             TSSEEEEECCSSSS-----H----HHHHHHH----HCSEEEEEECSC-TTTHHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred             CCCEEEEECCCCCC-----H----HHHHHHH----HCCEEEEEecCC-HHHHHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence            35789999998541     1    1112222    248999999887 43434455566665532112234668999999


Q ss_pred             CCC
Q 036158          148 DEL  150 (225)
Q Consensus       148 D~~  150 (225)
                      +..
T Consensus       141 ~~~  143 (206)
T 4dzz_A          141 IEM  143 (206)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            843

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.26  E-value=0.00014  Score=57.01  Aligned_cols=27  Identities=30%  Similarity=0.401  Sum_probs=23.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      .+.-.++|+|++|||||||++.|.+..
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence            345679999999999999999998753

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.25  E-value=0.00015  Score=56.99  Aligned_cols=24  Identities=25%  Similarity=0.531  Sum_probs=21.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           19 ERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      .-.++|+|++|||||||++.|.|.
T Consensus        46 Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           46 GEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            346899999999999999999996

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.25  E-value=0.00016  Score=57.10  Aligned_cols=27  Identities=30%  Similarity=0.348  Sum_probs=23.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      +.-.++|+|++|||||||++.|.|...
T Consensus        44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~   70 (271)
T 2ixe_A           44 PGKVTALVGPNGSGKSTVAALLQNLYQ   70 (271)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            345689999999999999999998753

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.25  E-value=0.00016  Score=57.35  Aligned_cols=26  Identities=23%  Similarity=0.341  Sum_probs=22.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .-.++|+|++|||||||++.|.|...
T Consensus        47 Ge~~~liG~NGsGKSTLlk~l~Gl~~   72 (279)
T 2ihy_A           47 GDKWILYGLNGAGKTTLLNILNAYEP   72 (279)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            34689999999999999999998754

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.24  E-value=0.00016  Score=52.30  Aligned_cols=26  Identities=23%  Similarity=0.284  Sum_probs=22.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      +.-.++|+|++|+|||||++.|.|..
T Consensus        32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           32 KAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            34579999999999999999998765

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.23  E-value=0.00017  Score=56.71  Aligned_cols=27  Identities=30%  Similarity=0.428  Sum_probs=23.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      +.-.++|+|++|||||||++.|.|...
T Consensus        32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~   58 (266)
T 2yz2_A           32 EGECLLVAGNTGSGKSTLLQIVAGLIE   58 (266)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            345789999999999999999998753

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.22  E-value=0.00017  Score=56.29  Aligned_cols=26  Identities=31%  Similarity=0.497  Sum_probs=22.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .-.++|+|++|||||||++.|.|...
T Consensus        31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~   56 (253)
T 2nq2_C           31 GDILAVLGQNGCGKSTLLDLLLGIHR   56 (253)
T ss_dssp             TCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            34689999999999999999998754

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.22  E-value=0.00012  Score=55.53  Aligned_cols=23  Identities=22%  Similarity=0.206  Sum_probs=21.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCC
Q 036158           20 RNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      -.++|+|++|||||||++.|.|.
T Consensus        23 e~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999987

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.21  E-value=0.00019  Score=54.23  Aligned_cols=26  Identities=23%  Similarity=0.381  Sum_probs=22.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      +...|+|+|++||||||+++.|.+..
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            34578999999999999999998654

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.16  E-value=0.00022  Score=55.95  Aligned_cols=24  Identities=25%  Similarity=0.548  Sum_probs=21.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           20 RNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      -.++|+|++|+|||||++.|.|..
T Consensus        31 e~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           31 EKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999999875

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.15  E-value=0.00023  Score=53.29  Aligned_cols=25  Identities=28%  Similarity=0.407  Sum_probs=21.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      ...|+|+|++||||||+++.|.+..
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            4579999999999999999998654

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.14  E-value=0.0002  Score=57.37  Aligned_cols=25  Identities=28%  Similarity=0.426  Sum_probs=21.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      +.-.++|+|++|+|||||++.|.|.
T Consensus       125 ~Ge~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          125 KKNCLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhhh
Confidence            4467999999999999999999864

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.10  E-value=0.00026  Score=58.00  Aligned_cols=26  Identities=23%  Similarity=0.437  Sum_probs=22.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .-.++|+|++|||||||++.|.|...
T Consensus        30 Ge~~~llGpsGsGKSTLLr~iaGl~~   55 (359)
T 3fvq_A           30 GEILFIIGASGCGKTTLLRCLAGFEQ   55 (359)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             CCEEEEECCCCchHHHHHHHHhcCCC
Confidence            34689999999999999999999764

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.10  E-value=0.00019  Score=57.56  Aligned_cols=27  Identities=30%  Similarity=0.396  Sum_probs=23.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      +.-.++|+|++|||||||++.|.|...
T Consensus        79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~  105 (306)
T 3nh6_A           79 PGQTLALVGPSGAGKSTILRLLFRFYD  105 (306)
T ss_dssp             TTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcCCC
Confidence            345789999999999999999998653

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.08  E-value=0.00021  Score=53.23  Aligned_cols=23  Identities=22%  Similarity=0.303  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCc
Q 036158           21 NLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      .++++|++|+|||||++.|.+..
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhc
Confidence            58999999999999999998754

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.07  E-value=0.00029  Score=56.68  Aligned_cols=28  Identities=21%  Similarity=0.114  Sum_probs=24.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      ..+...|+|+|++|||||||++.|.+.-
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence            3556789999999999999999998754

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.07  E-value=0.00018  Score=53.48  Aligned_cols=21  Identities=29%  Similarity=0.632  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhCC
Q 036158           22 LVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        22 i~v~G~~g~GKSSlin~l~~~   42 (225)
                      |+|+|++|+|||||++.|+..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999999854

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.07  E-value=0.00022  Score=54.59  Aligned_cols=26  Identities=35%  Similarity=0.455  Sum_probs=16.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHh-CCc
Q 036158           18 GERNLVLVGRTGNGKSATANSIL-GKR   43 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~-~~~   43 (225)
                      +...|+|+|++||||||+++.|. +..
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCCEEEEECSCC----CHHHHHHC---
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            34578999999999999999999 753

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.07  E-value=0.00034  Score=52.49  Aligned_cols=26  Identities=27%  Similarity=0.428  Sum_probs=21.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      .....|+|+|++||||||+.+.|...
T Consensus        10 ~~~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           10 ARIPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHh
Confidence            34467999999999999999998743

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.07  E-value=0.0003  Score=57.56  Aligned_cols=26  Identities=27%  Similarity=0.409  Sum_probs=22.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .-.++|+|++|||||||++.|.|...
T Consensus        41 Ge~~~llGpnGsGKSTLLr~iaGl~~   66 (355)
T 1z47_A           41 GEMVGLLGPSGSGKTTILRLIAGLER   66 (355)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            34688999999999999999998764

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.06  E-value=0.00034  Score=55.66  Aligned_cols=26  Identities=31%  Similarity=0.483  Sum_probs=22.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .-.++|+|++|+|||||++.|.|...
T Consensus        64 Ge~~~i~G~NGsGKSTLlk~l~Gl~~   89 (290)
T 2bbs_A           64 GQLLAVAGSTGAGKTSLLMMIMGELE   89 (290)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            45689999999999999999998754

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.05  E-value=0.00032  Score=57.57  Aligned_cols=27  Identities=19%  Similarity=0.225  Sum_probs=23.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      +.-.++|+|++|||||||++.|.|...
T Consensus        53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~   79 (366)
T 3tui_C           53 AGQIYGVIGASGAGKSTLIRCVNLLER   79 (366)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence            345689999999999999999998764

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.04  E-value=0.00029  Score=57.75  Aligned_cols=25  Identities=32%  Similarity=0.461  Sum_probs=21.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      .-.|+|+|++|||||||+++|++.-
T Consensus       123 ~g~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          123 RGLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcc
Confidence            4489999999999999999998653

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.04  E-value=0.00033  Score=57.84  Aligned_cols=26  Identities=35%  Similarity=0.468  Sum_probs=22.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .-.++|+|++|||||||++.|.|...
T Consensus        29 Ge~~~llGpsGsGKSTLLr~iaGl~~   54 (381)
T 3rlf_A           29 GEFVVFVGPSGCGKSTLLRMIAGLET   54 (381)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCEEEEEcCCCchHHHHHHHHHcCCC
Confidence            34689999999999999999998764

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.04  E-value=0.0003  Score=57.81  Aligned_cols=27  Identities=30%  Similarity=0.523  Sum_probs=23.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      +.-.++|+|++|||||||++.|.+.-.
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~~~  200 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQEIP  200 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            345899999999999999999998653

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.04  E-value=0.00033  Score=57.40  Aligned_cols=26  Identities=27%  Similarity=0.372  Sum_probs=22.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .-.++|+|++|||||||++.|.|...
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaGl~~   54 (359)
T 2yyz_A           29 GEFVALLGPSGCGKTTTLLMLAGIYK   54 (359)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CCEEEEEcCCCchHHHHHHHHHCCCC
Confidence            34689999999999999999998754

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.03  E-value=0.00034  Score=57.44  Aligned_cols=26  Identities=31%  Similarity=0.452  Sum_probs=22.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .-.++|+|++|||||||++.|.|...
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaGl~~   54 (362)
T 2it1_A           29 GEFMALLGPSGSGKSTLLYTIAGIYK   54 (362)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCEEEEECCCCchHHHHHHHHhcCCC
Confidence            35689999999999999999998764

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.02  E-value=0.00027  Score=57.39  Aligned_cols=24  Identities=33%  Similarity=0.574  Sum_probs=21.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           20 RNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      -.++|+|++|||||||++.|.+.-
T Consensus       172 ~~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            479999999999999999999865

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.02  E-value=0.00032  Score=52.50  Aligned_cols=24  Identities=29%  Similarity=0.607  Sum_probs=21.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhC
Q 036158           18 GERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      +...|+|+|++||||||+++.|.+
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999999875

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.01  E-value=0.00037  Score=50.62  Aligned_cols=23  Identities=39%  Similarity=0.657  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCC
Q 036158           20 RNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ..|+|+|++||||||+.+.|.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999998753

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=97.01  E-value=0.00037  Score=57.47  Aligned_cols=25  Identities=32%  Similarity=0.545  Sum_probs=22.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      -.++|+|++|||||||++.|.|...
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~~   54 (372)
T 1g29_1           30 EFMILLGPSGCGKTTTLRMIAGLEE   54 (372)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCC
Confidence            4688999999999999999998764

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.00  E-value=0.00038  Score=57.38  Aligned_cols=26  Identities=38%  Similarity=0.533  Sum_probs=22.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .-.++|+|++|||||||++.|.|...
T Consensus        37 Ge~~~llGpnGsGKSTLLr~iaGl~~   62 (372)
T 1v43_A           37 GEFLVLLGPSGCGKTTTLRMIAGLEE   62 (372)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCCC
Confidence            35688999999999999999998754

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.99  E-value=0.00045  Score=53.45  Aligned_cols=26  Identities=27%  Similarity=0.452  Sum_probs=22.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh---CCcc
Q 036158           19 ERNLVLVGRTGNGKSATANSIL---GKRA   44 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~---~~~~   44 (225)
                      ...|+|+|++||||||+++.|.   |...
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~   55 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQNFGLQH   55 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence            4689999999999999999998   7653

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.98  E-value=0.00039  Score=53.79  Aligned_cols=26  Identities=23%  Similarity=0.231  Sum_probs=22.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      .+...|+|+|++|||||||++.|.+.
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34578999999999999999998763

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.97  E-value=0.00046  Score=50.27  Aligned_cols=24  Identities=38%  Similarity=0.547  Sum_probs=20.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhC
Q 036158           18 GERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      +...|+|+|++||||||+.+.|.+
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            346799999999999999998864

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.95  E-value=0.00046  Score=51.01  Aligned_cols=21  Identities=29%  Similarity=0.507  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhC
Q 036158           21 NLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .++|+|++||||||+++.|.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            588999999999999999975

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.95  E-value=0.00015  Score=53.13  Aligned_cols=24  Identities=21%  Similarity=0.315  Sum_probs=21.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           20 RNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      ..++|+|++|||||||++.|.+..
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999998754

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.94  E-value=0.00045  Score=51.64  Aligned_cols=27  Identities=22%  Similarity=0.224  Sum_probs=22.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      .+...|+|+|++||||||+.+.|.+.-
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l   49 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQML   49 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            345789999999999999999987543

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.92  E-value=0.00046  Score=57.23  Aligned_cols=27  Identities=33%  Similarity=0.452  Sum_probs=23.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      +.-.++|+|++|||||||++.|.|...
T Consensus        46 ~Ge~~~llGpsGsGKSTLLr~iaGl~~   72 (390)
T 3gd7_A           46 PGQRVGLLGRTGSGKSTLLSAFLRLLN   72 (390)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCCC
Confidence            345689999999999999999998653

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.92  E-value=0.0004  Score=59.68  Aligned_cols=25  Identities=32%  Similarity=0.436  Sum_probs=21.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      ...++|+|++|||||||+|+|++.-
T Consensus       260 g~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          260 KFSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3469999999999999999999754

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.91  E-value=0.00043  Score=57.12  Aligned_cols=27  Identities=30%  Similarity=0.401  Sum_probs=22.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      .+.-.|+|+|++|||||||++.|.+..
T Consensus       134 ~~g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          134 RKMGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            345679999999999999999998753

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.90  E-value=0.00031  Score=57.34  Aligned_cols=26  Identities=31%  Similarity=0.450  Sum_probs=22.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .-.++|+|++|||||||++.|.|...
T Consensus        26 Ge~~~llGpnGsGKSTLLr~iaGl~~   51 (348)
T 3d31_A           26 GEYFVILGPTGAGKTLFLELIAGFHV   51 (348)
T ss_dssp             TCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             CCEEEEECCCCccHHHHHHHHHcCCC
Confidence            34689999999999999999998764

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.89  E-value=0.00071  Score=52.62  Aligned_cols=27  Identities=19%  Similarity=0.278  Sum_probs=23.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHh---CCc
Q 036158           17 NGERNLVLVGRTGNGKSATANSIL---GKR   43 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~---~~~   43 (225)
                      .+...|+|+|++||||||+++.|.   |..
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~   54 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWR   54 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence            345789999999999999999998   654

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.88  E-value=0.00058  Score=50.13  Aligned_cols=24  Identities=17%  Similarity=0.293  Sum_probs=21.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           19 ERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ...++++|++|+|||||++.|++.
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHh
Confidence            367999999999999999999864

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.87  E-value=0.00049  Score=57.63  Aligned_cols=26  Identities=31%  Similarity=0.363  Sum_probs=22.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      +.-.|+|+|++|||||||+++|++.-
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg~l  191 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQEL  191 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHhhc
Confidence            34579999999999999999998743

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.87  E-value=0.0004  Score=52.77  Aligned_cols=24  Identities=21%  Similarity=0.295  Sum_probs=21.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           19 ERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      .-.++|+|++|+|||||++.|.+.
T Consensus        25 G~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           25 QAITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999999873

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=96.86  E-value=0.00076  Score=53.39  Aligned_cols=106  Identities=6%  Similarity=-0.004  Sum_probs=59.1

Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc---ccccEEEEEecC-CCCCCCcccHHHHhhhcCCch
Q 036158           93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKK---ISDYMIVVFTGG-DELEDNDETLEDYLGRECPKP  168 (225)
Q Consensus        93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~vv~~k~-D~~~~~~~~~~~~~~~~~~~~  168 (225)
                      ++..+..++.+.|++|||+|+.++-..+.++.+..|...+.++   ...|++|..||. |.....  ...+..+. +.  
T Consensus       200 lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Am--s~~EI~e~-L~--  274 (312)
T 3l2o_B          200 VIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRM--PCFYLAHE-LH--  274 (312)
T ss_dssp             CCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBC--CHHHHHHH-TT--
T ss_pred             HHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCC--CHHHHHHH-cC--
Confidence            4455556677789999999986432212333333333333222   236889888975 654332  44443333 11  


Q ss_pred             HHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          169 LKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      +..+    ...++..    +++|.++.|+.+-++++.+.+..+
T Consensus       275 L~~l----~r~W~Iq----~csA~tGeGL~EGldWL~~~l~~k  309 (312)
T 3l2o_B          275 LNLL----NHPWLVQ----DTEAETLTGFLNGIEWILEEVESK  309 (312)
T ss_dssp             GGGG----CSCEEEE----EEETTTCTTHHHHHHHHHHHSCC-
T ss_pred             CccC----CCcEEEE----ecccCCCcCHHHHHHHHHHHHHhh
Confidence            1111    2334433    345667899999999998776543

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.86  E-value=0.0006  Score=49.26  Aligned_cols=20  Identities=30%  Similarity=0.569  Sum_probs=18.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSI   39 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l   39 (225)
                      +.|+|+|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            57999999999999999999

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.86  E-value=0.00058  Score=54.77  Aligned_cols=26  Identities=23%  Similarity=0.213  Sum_probs=22.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      .....|+|+|++|||||||++.|.+.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            44578999999999999999998864

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.85  E-value=0.00063  Score=54.90  Aligned_cols=27  Identities=19%  Similarity=0.181  Sum_probs=22.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ....+.|+|+|++|||||||++.|.+.
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~l  115 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKAL  115 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            345678999999999999999888643

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.84  E-value=0.0007  Score=51.40  Aligned_cols=22  Identities=18%  Similarity=0.388  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ..|+|+|++||||||+.+.|.+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998865

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.83  E-value=0.0009  Score=50.20  Aligned_cols=27  Identities=19%  Similarity=0.307  Sum_probs=22.7

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhC
Q 036158           15 PSNGERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        15 ~~~~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      +......|+|.|.+||||||+.+.|..
T Consensus         6 ~~~~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            6 DKKKGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CCBCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             hhhcCCEEEEEcCCCCCHHHHHHHHHH
Confidence            344567899999999999999999864

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.83  E-value=0.0007  Score=51.85  Aligned_cols=26  Identities=19%  Similarity=0.284  Sum_probs=23.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      .+...|+|.|.+||||||+++.|.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            45678999999999999999999865

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.82  E-value=0.00074  Score=50.59  Aligned_cols=22  Identities=32%  Similarity=0.389  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ..|+|+|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999976

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.81  E-value=0.00031  Score=57.50  Aligned_cols=26  Identities=23%  Similarity=0.403  Sum_probs=22.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .-.++|+|++|||||||++.|.|...
T Consensus        31 Ge~~~llGpnGsGKSTLLr~iaGl~~   56 (353)
T 1oxx_K           31 GERFGILGPSGAGKTTFMRIIAGLDV   56 (353)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            34689999999999999999998764

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.79  E-value=0.00041  Score=56.98  Aligned_cols=25  Identities=20%  Similarity=0.381  Sum_probs=22.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      .-+++|+|++|||||||++.|.|..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999998764

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.79  E-value=0.00051  Score=55.40  Aligned_cols=26  Identities=27%  Similarity=0.340  Sum_probs=22.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      +...++|+|..|||||||+|.|++..
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cccEEEEEecCCCCHHHHHHHHHhhc
Confidence            35678999999999999999999764

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.79  E-value=0.00049  Score=50.47  Aligned_cols=25  Identities=32%  Similarity=0.436  Sum_probs=21.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      ...++++|++|+|||||++++.+.-
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            4578999999999999999988644

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.77  E-value=0.00094  Score=49.84  Aligned_cols=25  Identities=24%  Similarity=0.444  Sum_probs=21.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .....|+|+|.+||||||+.+.|..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4456899999999999999998853

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.76  E-value=0.0008  Score=48.61  Aligned_cols=22  Identities=23%  Similarity=0.143  Sum_probs=19.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ..|+|.|.+||||||+.+.|..
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998863

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.75  E-value=0.0009  Score=53.25  Aligned_cols=27  Identities=26%  Similarity=0.331  Sum_probs=23.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ......|+|+|++|||||||.+.|.+.
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~   54 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNH   54 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            455688999999999999999988753

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.73  E-value=0.00081  Score=50.24  Aligned_cols=22  Identities=32%  Similarity=0.454  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .+|+|+|.+||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999875

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.72  E-value=0.00061  Score=48.63  Aligned_cols=26  Identities=19%  Similarity=0.286  Sum_probs=22.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      +...++++|++|+|||||++++.+..
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            44578999999999999999998654

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.72  E-value=0.00089  Score=50.11  Aligned_cols=25  Identities=28%  Similarity=0.340  Sum_probs=21.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .....|+|+|++||||||+++.|.+
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4457899999999999999999875

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.71  E-value=0.0056  Score=48.88  Aligned_cols=86  Identities=17%  Similarity=0.196  Sum_probs=50.2

Q ss_pred             cCCCccEEEEEEeCCCCC-CHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158          100 TKDGIHAVLVVFSVRNRF-SEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus       100 ~~~~~~~ii~v~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      ++.++|++++|+|+.++. +... .+++..+..     ...|+++|+||+|+....  .++ ...+     +.+..+..+
T Consensus        76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-----~~~~~ilV~NK~DL~~~~--~v~-~~~~-----~~~~~~~~g  142 (302)
T 2yv5_A           76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-----FKVEPVIVFNKIDLLNEE--EKK-ELER-----WISIYRDAG  142 (302)
T ss_dssp             EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGCCHH--HHH-HHHH-----HHHHHHHTT
T ss_pred             HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-----CCCCEEEEEEcccCCCcc--ccH-HHHH-----HHHHHHHCC
Confidence            567889999999997543 4432 123333322     237899999999986431  111 1122     344444445


Q ss_pred             CcEEEeeCCCccccccHHHHHHHHHHH
Q 036158          178 NRCVLFDNKTKDTAKRTEQVGKLLSLV  204 (225)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i  204 (225)
                      ..++      ..||.++.++++|++.+
T Consensus       143 ~~~~------~~SA~~g~gi~~L~~~l  163 (302)
T 2yv5_A          143 YDVL------KVSAKTGEGIDELVDYL  163 (302)
T ss_dssp             CEEE------ECCTTTCTTHHHHHHHT
T ss_pred             CeEE------EEECCCCCCHHHHHhhc
Confidence            4332      33455667888887765

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.71  E-value=0.0012  Score=48.64  Aligned_cols=25  Identities=28%  Similarity=0.517  Sum_probs=21.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ...+|+|+|.+||||||+.+.|...
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3568999999999999999988643

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.70  E-value=0.001  Score=49.69  Aligned_cols=25  Identities=24%  Similarity=0.399  Sum_probs=20.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .+...|+|+|++||||||+.+.|..
T Consensus        23 ~~~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           23 NAMVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHH
Confidence            3446899999999999999998863

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.68  E-value=0.0015  Score=48.68  Aligned_cols=27  Identities=15%  Similarity=0.375  Sum_probs=22.5

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHh
Q 036158           14 SPSNGERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        14 ~~~~~~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      .+......|+|.|.+||||||+.+.|.
T Consensus        10 ~~~~~~~~I~l~G~~GsGKsT~~~~L~   36 (203)
T 1ukz_A           10 FSPDQVSVIFVLGGPGAGKGTQCEKLV   36 (203)
T ss_dssp             SCTTTCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHH
Confidence            344555789999999999999998886

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.67  E-value=0.0011  Score=48.71  Aligned_cols=23  Identities=22%  Similarity=0.485  Sum_probs=20.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHh
Q 036158           18 GERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      ....|+|+|.+||||||+.+.|.
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La   25 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLA   25 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34679999999999999999886

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.67  E-value=0.001  Score=48.91  Aligned_cols=23  Identities=17%  Similarity=0.430  Sum_probs=20.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhC
Q 036158           19 ERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ...|+|.|.+||||||+.+.|..
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.66  E-value=0.0011  Score=48.20  Aligned_cols=22  Identities=27%  Similarity=0.525  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ..|++.|.+||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999875

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.65  E-value=0.00094  Score=48.93  Aligned_cols=21  Identities=38%  Similarity=0.534  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhC
Q 036158           21 NLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ..+|+|++|+||||++.+|..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            678999999999999999853

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.63  E-value=0.00077  Score=57.13  Aligned_cols=26  Identities=19%  Similarity=0.371  Sum_probs=22.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      ...+++|+|++|||||||++.|.|..
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            44689999999999999999998764

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.63  E-value=0.0013  Score=48.42  Aligned_cols=24  Identities=13%  Similarity=0.346  Sum_probs=20.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhC
Q 036158           18 GERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ....|+|+|.+||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998863

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.62  E-value=0.0011  Score=49.26  Aligned_cols=21  Identities=29%  Similarity=0.526  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhC
Q 036158           21 NLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999998864

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.62  E-value=0.0014  Score=47.78  Aligned_cols=22  Identities=27%  Similarity=0.477  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ..|+|.|.+||||||+.+.|..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999874

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.61  E-value=0.0011  Score=57.45  Aligned_cols=28  Identities=25%  Similarity=0.386  Sum_probs=24.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .+.-.++|+|++|+|||||++.|.|...
T Consensus        45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~   72 (538)
T 1yqt_A           45 KEGMVVGIVGPNGTGKSTAVKILAGQLI   72 (538)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4556799999999999999999999653

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.60  E-value=0.001  Score=49.63  Aligned_cols=23  Identities=30%  Similarity=0.583  Sum_probs=20.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhC
Q 036158           19 ERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ...|+|+|.+||||||+.+.|.+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.59  E-value=0.014  Score=45.02  Aligned_cols=24  Identities=25%  Similarity=0.421  Sum_probs=20.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhC
Q 036158           18 GERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ....|+|.|++|+|||++++++..
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999999874

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.59  E-value=0.0015  Score=48.63  Aligned_cols=24  Identities=21%  Similarity=0.325  Sum_probs=21.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           19 ERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ...|+|.|.+||||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            467999999999999999998743

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.59  E-value=0.0014  Score=47.86  Aligned_cols=24  Identities=17%  Similarity=0.203  Sum_probs=20.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           19 ERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      .+.|+++|.+|||||||++.|...
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            467999999999999999998853

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.57  E-value=0.0013  Score=49.65  Aligned_cols=21  Identities=43%  Similarity=0.727  Sum_probs=19.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~   40 (225)
                      ++|+|+|.+||||||+.+.|.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQII   21 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            369999999999999999884

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.56  E-value=0.0019  Score=47.51  Aligned_cols=26  Identities=23%  Similarity=0.299  Sum_probs=22.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      .+...|+|+|.+||||||+.+.|...
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            45678999999999999999988743

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.56  E-value=0.024  Score=47.62  Aligned_cols=25  Identities=24%  Similarity=0.481  Sum_probs=21.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      +..-|++.|++|+|||+|.+++.+.
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            3466999999999999999999853

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.54  E-value=0.0017  Score=47.39  Aligned_cols=24  Identities=25%  Similarity=0.372  Sum_probs=20.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHh
Q 036158           17 NGERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      .....|+++|.+||||||+.+.|.
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~   32 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELA   32 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHH
Confidence            345679999999999999999886

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.51  E-value=0.0015  Score=49.33  Aligned_cols=21  Identities=43%  Similarity=0.694  Sum_probs=19.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~   40 (225)
                      ++|+|+|.+||||||+.+.|.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIV   21 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            369999999999999999885

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.51  E-value=0.0014  Score=48.13  Aligned_cols=22  Identities=23%  Similarity=0.312  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ..|+|.|.+||||||+.+.|..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998864

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.51  E-value=0.0018  Score=56.85  Aligned_cols=29  Identities=34%  Similarity=0.412  Sum_probs=24.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAF   45 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~   45 (225)
                      .+.-.++|+|++|+|||||++.|.|....
T Consensus       101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~P  129 (608)
T 3j16_B          101 RPGQVLGLVGTNGIGKSTALKILAGKQKP  129 (608)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCCCC
Confidence            44567999999999999999999997643

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.51  E-value=0.0016  Score=47.82  Aligned_cols=22  Identities=27%  Similarity=0.536  Sum_probs=19.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 036158           19 ERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      ...|+++|.+||||||+.+.|.
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La   26 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLA   26 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999885

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.50  E-value=0.0016  Score=49.30  Aligned_cols=23  Identities=30%  Similarity=0.538  Sum_probs=20.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHh
Q 036158           18 GERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      ..+.|+|+|.+||||||+.+.|.
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La   25 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQ   25 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            34789999999999999998875

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.49  E-value=0.0015  Score=57.07  Aligned_cols=27  Identities=37%  Similarity=0.519  Sum_probs=23.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      +.-.++++|++|+|||||++.|.|...
T Consensus       368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~  394 (582)
T 3b60_A          368 AGKTVALVGRSGSGKSTIASLITRFYD  394 (582)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhccC
Confidence            345789999999999999999998753

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.49  E-value=0.0018  Score=48.34  Aligned_cols=23  Identities=26%  Similarity=0.343  Sum_probs=20.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhC
Q 036158           19 ERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ...|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            46899999999999999999864

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.49  E-value=0.0018  Score=56.03  Aligned_cols=28  Identities=21%  Similarity=0.400  Sum_probs=23.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .+.-.++|+|++|+|||||++.|.|...
T Consensus        23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~   50 (538)
T 3ozx_A           23 KNNTILGVLGKNGVGKTTVLKILAGEII   50 (538)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            3446789999999999999999999754

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.48  E-value=0.0011  Score=52.24  Aligned_cols=21  Identities=29%  Similarity=0.555  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhCC
Q 036158           22 LVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        22 i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ++++|++|+|||||+++|.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999999864

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.47  E-value=0.0018  Score=48.08  Aligned_cols=26  Identities=23%  Similarity=0.257  Sum_probs=22.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      .....|+|+|.+||||||+.+.|...
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            34578999999999999999998754

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.47  E-value=0.0017  Score=47.74  Aligned_cols=22  Identities=23%  Similarity=0.443  Sum_probs=19.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 036158           19 ERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      ...|+|.|.+||||||+.+.|.
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~   24 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIV   24 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            4679999999999999998875

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.46  E-value=0.0019  Score=47.15  Aligned_cols=24  Identities=21%  Similarity=0.321  Sum_probs=20.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhC
Q 036158           18 GERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      +...|+|+|.+||||||+.+.|.+
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999875

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.45  E-value=0.002  Score=48.69  Aligned_cols=23  Identities=35%  Similarity=0.494  Sum_probs=20.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhC
Q 036158           19 ERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .+.|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998864

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.45  E-value=0.0019  Score=48.48  Aligned_cols=24  Identities=25%  Similarity=0.336  Sum_probs=21.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhC
Q 036158           18 GERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ....|+|.|.+||||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999874

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.45  E-value=0.0012  Score=53.89  Aligned_cols=26  Identities=19%  Similarity=0.189  Sum_probs=22.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      +.-+++|+|++|+|||||++.|.+..
T Consensus        70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           70 IGQRIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34579999999999999999999764

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.45  E-value=0.0012  Score=56.09  Aligned_cols=23  Identities=30%  Similarity=0.371  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCC
Q 036158           20 RNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      -.++|+|++|||||||++.|.|.
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl   52 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTA   52 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhcC
Confidence            56899999999999999998764

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.45  E-value=0.002  Score=56.23  Aligned_cols=27  Identities=37%  Similarity=0.500  Sum_probs=23.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      +.-.++++|++|+|||||++.|.|...
T Consensus       368 ~G~~~~ivG~sGsGKSTll~~l~g~~~  394 (582)
T 3b5x_A          368 QGKTVALVGRSGSGKSTIANLFTRFYD  394 (582)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            445789999999999999999998754

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.44  E-value=0.002  Score=56.49  Aligned_cols=28  Identities=21%  Similarity=0.388  Sum_probs=24.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .+.-.++|+|++|+|||||++.|.|...
T Consensus       115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~  142 (607)
T 3bk7_A          115 KDGMVVGIVGPNGTGKTTAVKILAGQLI  142 (607)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence            4556799999999999999999998754

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.43  E-value=0.0023  Score=50.79  Aligned_cols=26  Identities=23%  Similarity=0.478  Sum_probs=21.8

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhC
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ......|+|.|++||||||+.+.|..
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34457899999999999999999863

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.42  E-value=0.002  Score=47.61  Aligned_cols=23  Identities=26%  Similarity=0.518  Sum_probs=20.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHh
Q 036158           18 GERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      +...|+|+|.+||||||+.+.|.
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La   30 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIV   30 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHH
Confidence            44689999999999999998885

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.42  E-value=0.0022  Score=55.45  Aligned_cols=25  Identities=24%  Similarity=0.440  Sum_probs=22.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      -.++|+|++|||||||++.|.|...
T Consensus       295 ei~~i~G~nGsGKSTLl~~l~Gl~~  319 (538)
T 3ozx_A          295 EIIGILGPNGIGKTTFARILVGEIT  319 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4688999999999999999999764

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.41  E-value=0.0016  Score=57.07  Aligned_cols=28  Identities=29%  Similarity=0.453  Sum_probs=24.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .+.-.++++|++|+|||||++.|.|...
T Consensus       379 ~~G~~~~ivG~sGsGKSTll~~l~g~~~  406 (598)
T 3qf4_B          379 KPGQKVALVGPTGSGKTTIVNLLMRFYD  406 (598)
T ss_dssp             CTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence            3456899999999999999999998764

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.40  E-value=0.0013  Score=50.90  Aligned_cols=21  Identities=38%  Similarity=0.697  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhCC
Q 036158           22 LVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        22 i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ++++|++|+|||||+++|.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            999999999999999999864

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.40  E-value=0.0014  Score=57.25  Aligned_cols=27  Identities=30%  Similarity=0.337  Sum_probs=23.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      +.-.++++|++|+|||||++.|.|...
T Consensus       366 ~G~~~~ivG~sGsGKSTll~~l~g~~~  392 (578)
T 4a82_A          366 KGETVAFVGMSGGGKSTLINLIPRFYD  392 (578)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCCC
Confidence            345789999999999999999998764

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.39  E-value=0.0028  Score=48.48  Aligned_cols=27  Identities=19%  Similarity=0.361  Sum_probs=22.8

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ......|+|.|.+||||||+++.|...
T Consensus        23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           23 NAMSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            445688999999999999999988743

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.38  E-value=0.0024  Score=49.35  Aligned_cols=24  Identities=17%  Similarity=0.448  Sum_probs=21.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHh
Q 036158           17 NGERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      ...++|+|+|++||||||+.+.|.
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~   50 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLK   50 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHH
Confidence            456899999999999999999886

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.38  E-value=0.015  Score=45.60  Aligned_cols=23  Identities=26%  Similarity=0.536  Sum_probs=20.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhC
Q 036158           19 ERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ...++|.|++|+|||++++++..
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~   73 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVAT   73 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            45699999999999999999974

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.37  E-value=0.03  Score=45.69  Aligned_cols=22  Identities=32%  Similarity=0.542  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCC
Q 036158           21 NLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      .++|.|++|+||||+++.+.+.
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999998854

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.35  E-value=0.0018  Score=56.62  Aligned_cols=27  Identities=30%  Similarity=0.311  Sum_probs=23.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      +.-.++++|++|+|||||++.|.|...
T Consensus       368 ~Ge~~~ivG~sGsGKSTll~~l~g~~~  394 (587)
T 3qf4_A          368 PGSLVAVLGETGSGKSTLMNLIPRLID  394 (587)
T ss_dssp             TTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence            345789999999999999999998754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.34  E-value=0.0027  Score=54.87  Aligned_cols=26  Identities=23%  Similarity=0.376  Sum_probs=22.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .-.++|+|++|+|||||++.|.|...
T Consensus       312 Ge~~~i~G~NGsGKSTLlk~l~Gl~~  337 (538)
T 1yqt_A          312 GEVIGIVGPNGIGKTTFVKMLAGVEE  337 (538)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            34689999999999999999999764

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.34  E-value=0.0022  Score=46.20  Aligned_cols=22  Identities=23%  Similarity=0.315  Sum_probs=19.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ++|+|.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999988853

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.34  E-value=0.002  Score=49.00  Aligned_cols=22  Identities=27%  Similarity=0.468  Sum_probs=19.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 036158           19 ERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      ...|+|+|.+||||||+.+.|.
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999885

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.34  E-value=0.0021  Score=45.76  Aligned_cols=21  Identities=33%  Similarity=0.618  Sum_probs=18.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~   40 (225)
                      ...+|+|++|+||||++.+|.
T Consensus        24 g~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           24 GINLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            356888999999999998875

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.32  E-value=0.026  Score=47.17  Aligned_cols=24  Identities=25%  Similarity=0.563  Sum_probs=21.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           19 ERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ..-|++.|++|+|||+|.+++.+.
T Consensus       216 prGvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          216 PKGVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred             CCCCceECCCCchHHHHHHHHHHH
Confidence            356999999999999999999854

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.31  E-value=0.027  Score=47.16  Aligned_cols=24  Identities=25%  Similarity=0.524  Sum_probs=20.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           19 ERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ..-|++.|++|+|||++.+++.+.
T Consensus       206 prGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          206 PRGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            345999999999999999999853

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.30  E-value=0.0029  Score=55.46  Aligned_cols=25  Identities=24%  Similarity=0.401  Sum_probs=22.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      -.++|+|++|+|||||++.|.|...
T Consensus       383 ei~~i~G~NGsGKSTLlk~l~Gl~~  407 (607)
T 3bk7_A          383 EVIGIVGPNGIGKTTFVKMLAGVEE  407 (607)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4689999999999999999999764

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.28  E-value=0.0022  Score=48.29  Aligned_cols=21  Identities=29%  Similarity=0.488  Sum_probs=18.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~   40 (225)
                      ++|+|+|.+||||||+.+.|.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~   21 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIM   21 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            369999999999999998885

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.28  E-value=0.0017  Score=54.73  Aligned_cols=27  Identities=19%  Similarity=0.200  Sum_probs=23.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      .+.-+++|+|++|+|||||++.|.+..
T Consensus       155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          155 GRGQRMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             BTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            344579999999999999999999765

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.27  E-value=0.0021  Score=52.82  Aligned_cols=20  Identities=35%  Similarity=0.419  Sum_probs=17.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 036158           21 NLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~   40 (225)
                      -.+|+|++|+||||++++|.
T Consensus        25 ~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           25 ITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            46699999999999999976

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.26  E-value=0.0025  Score=48.34  Aligned_cols=22  Identities=18%  Similarity=0.347  Sum_probs=19.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 036158           19 ERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      ...|+|+|.+||||||+.+.|.
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La   26 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIK   26 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3679999999999999998875

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.25  E-value=0.0019  Score=48.97  Aligned_cols=22  Identities=23%  Similarity=0.385  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      -.++|+|++|+|||||++.|.+
T Consensus        24 ~~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           24 FFIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4688999999999999999874

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.25  E-value=0.0029  Score=48.39  Aligned_cols=25  Identities=32%  Similarity=0.425  Sum_probs=21.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHh
Q 036158           16 SNGERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      .....+|+|+|.+||||||+.+.|.
T Consensus        13 ~~~~~~I~l~G~~GsGKsT~a~~La   37 (233)
T 1ak2_A           13 SPKGVRAVLLGPPGAGKGTQAPKLA   37 (233)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHH
Confidence            3445789999999999999998885

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.25  E-value=0.0051  Score=48.56  Aligned_cols=24  Identities=38%  Similarity=0.491  Sum_probs=21.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHh
Q 036158           17 NGERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      .....|+|.|.+||||||+.+.|.
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            345789999999999999999886

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.24  E-value=0.0026  Score=46.78  Aligned_cols=21  Identities=24%  Similarity=0.460  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhC
Q 036158           21 NLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.22  E-value=0.0024  Score=46.40  Aligned_cols=21  Identities=38%  Similarity=0.651  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhC
Q 036158           21 NLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~   41 (225)
                      +|+|+|.+||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999998863

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.21  E-value=0.036  Score=45.97  Aligned_cols=24  Identities=25%  Similarity=0.515  Sum_probs=20.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           19 ERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ..-|++.|++|+|||+|.+++.+.
T Consensus       182 prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          182 PKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CCceEEeCCCCCCHHHHHHHHHHh
Confidence            356999999999999999999854

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.21  E-value=0.0019  Score=50.75  Aligned_cols=21  Identities=38%  Similarity=0.697  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhCC
Q 036158           22 LVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        22 i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ++|+|++|+|||||+++|.+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHH
Confidence            999999999999999999864

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.21  E-value=0.0037  Score=45.88  Aligned_cols=21  Identities=24%  Similarity=0.548  Sum_probs=19.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~   40 (225)
                      ..|+|.|.+||||||+.+.|.
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~   27 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIV   27 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999998885

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.18  E-value=0.14  Score=41.13  Aligned_cols=25  Identities=32%  Similarity=0.476  Sum_probs=21.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      +...|+|.|++|+|||+|.+++...
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCceEEEECCCCccHHHHHHHHHHH
Confidence            3467999999999999999999853

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.18  E-value=0.003  Score=48.56  Aligned_cols=23  Identities=26%  Similarity=0.481  Sum_probs=20.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHh
Q 036158           18 GERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      ..+.|+|.|++||||||+.+.|.
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la   30 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999886

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.17  E-value=0.003  Score=48.95  Aligned_cols=25  Identities=24%  Similarity=0.280  Sum_probs=20.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ...+.|+|.|.+||||||+.+.|..
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999988854

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.16  E-value=0.0012  Score=49.62  Aligned_cols=21  Identities=24%  Similarity=0.461  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhC
Q 036158           21 NLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .|+|.|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            589999999999999999874

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.16  E-value=0.003  Score=49.08  Aligned_cols=21  Identities=29%  Similarity=0.283  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhC
Q 036158           21 NLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .|+|+|++||||||+.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998853

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.15  E-value=0.0022  Score=46.79  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=15.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 036158           19 ERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      ...|+|.|.+||||||+.+.|.
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La   26 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLH   26 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4679999999999999999885

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.15  E-value=0.003  Score=46.70  Aligned_cols=23  Identities=17%  Similarity=0.508  Sum_probs=20.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhC
Q 036158           19 ERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ...|+|.|.+||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999988853

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.14  E-value=0.0049  Score=48.18  Aligned_cols=79  Identities=16%  Similarity=0.157  Sum_probs=47.6

Q ss_pred             CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcE
Q 036158          101 KDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC  180 (225)
Q Consensus       101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (225)
                      ...+|+++.|+|+..+.+..... ++ +   .    .+|.++|+||+|+....  ..+    .     |.+.++..+.++
T Consensus        19 l~~~D~vl~VvDar~P~~~~~~~-l~-l---l----~k~~iivlNK~DL~~~~--~~~----~-----~~~~~~~~g~~v   78 (262)
T 3cnl_A           19 LRLVNTVVEVRDARAPFATSAYG-VD-F---S----RKETIILLNKVDIADEK--TTK----K-----WVEFFKKQGKRV   78 (262)
T ss_dssp             HTTCSEEEEEEETTSTTTTSCTT-SC-C---T----TSEEEEEEECGGGSCHH--HHH----H-----HHHHHHHTTCCE
T ss_pred             HhhCCEEEEEeeCCCCCcCcChH-HH-h---c----CCCcEEEEECccCCCHH--HHH----H-----HHHHHHHcCCeE
Confidence            34669999999997665543211 12 1   1    28999999999987531  222    1     344444445443


Q ss_pred             EEeeCCCccccccHHHHHHHHHHHHH
Q 036158          181 VLFDNKTKDTAKRTEQVGKLLSLVNS  206 (225)
Q Consensus       181 ~~~~~~~~~~~~~~~~v~~l~~~i~~  206 (225)
                       .+      |+.++.++++|++.+.+
T Consensus        79 -~i------Sa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           79 -IT------THKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             -EE------CCTTSCHHHHHHHHCCC
T ss_pred             -EE------ECCCCcCHHHHHHHHHH
Confidence             33      34455778888777643

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.13  E-value=0.0033  Score=46.79  Aligned_cols=25  Identities=20%  Similarity=0.357  Sum_probs=21.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .-+..|+|+|.+||||||+.+.|..
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            3468899999999999999988863

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.13  E-value=0.0025  Score=49.45  Aligned_cols=26  Identities=23%  Similarity=0.312  Sum_probs=21.8

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhC
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ......|+++|.+||||||+.+.|..
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34457899999999999999998864

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.13  E-value=0.0022  Score=51.91  Aligned_cols=24  Identities=29%  Similarity=0.454  Sum_probs=20.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           20 RNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      ..++++|++|+|||||++.|.+.-
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            458999999999999999998643

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.12  E-value=0.0037  Score=54.79  Aligned_cols=25  Identities=28%  Similarity=0.448  Sum_probs=22.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccc
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAF   45 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~   45 (225)
                      .++|+|++|+|||||++.|.|....
T Consensus       380 iv~iiG~NGsGKSTLlk~l~Gl~~p  404 (608)
T 3j16_B          380 ILVMMGENGTGKTTLIKLLAGALKP  404 (608)
T ss_dssp             EEEEESCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCCC
Confidence            4799999999999999999997643

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.12  E-value=0.003  Score=46.24  Aligned_cols=21  Identities=38%  Similarity=0.567  Sum_probs=18.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~   40 (225)
                      +.|+|+|.+||||||+.+.|.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La   23 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLA   23 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            469999999999999998875

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.11  E-value=0.0032  Score=47.83  Aligned_cols=21  Identities=29%  Similarity=0.593  Sum_probs=18.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~   40 (225)
                      +.|+|.|.+||||||+.+.|.
T Consensus         1 m~I~l~G~~GsGKsT~a~~La   21 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVK   21 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            368999999999999998885

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=96.10  E-value=0.0024  Score=61.00  Aligned_cols=27  Identities=30%  Similarity=0.335  Sum_probs=23.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      +.-+|+++|++|||||||++.|++-..
T Consensus      1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1130 (1321)
T 4f4c_A         1104 PGQTLALVGPSGCGKSTVVALLERFYD 1130 (1321)
T ss_dssp             TTCEEEEECSTTSSTTSHHHHHTTSSC
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCcc
Confidence            445799999999999999999998653

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.10  E-value=0.0023  Score=50.82  Aligned_cols=24  Identities=17%  Similarity=0.195  Sum_probs=20.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           19 ERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      .-.++|+|++|+|||||++.|.+.
T Consensus        35 G~~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           35 GEVIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHH
Confidence            346889999999999999988754

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.09  E-value=0.0031  Score=45.51  Aligned_cols=21  Identities=19%  Similarity=0.463  Sum_probs=18.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~   40 (225)
                      ..|+|.|.+||||||+.+.|.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La   23 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELA   23 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHH
Confidence            469999999999999998885

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.09  E-value=0.029  Score=47.29  Aligned_cols=25  Identities=24%  Similarity=0.531  Sum_probs=21.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      +..-|++.|++|+|||+|.+++.+.
T Consensus       242 pprGILLyGPPGTGKTlLAkAiA~e  266 (467)
T 4b4t_H          242 PPKGILLYGPPGTGKTLCARAVANR  266 (467)
T ss_dssp             CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHhc
Confidence            4467999999999999999999853

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.07  E-value=0.0039  Score=48.61  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=20.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhC
Q 036158           19 ERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ...|+++|.+||||||+.+.|..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            36799999999999999998863

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.06  E-value=0.0034  Score=48.76  Aligned_cols=23  Identities=30%  Similarity=0.543  Sum_probs=20.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhC
Q 036158           19 ERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ...|+|+|.+||||||+.+.|.+
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998864

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.04  E-value=0.0043  Score=45.09  Aligned_cols=24  Identities=33%  Similarity=0.595  Sum_probs=20.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           19 ERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ...++|.|++|+|||++++.+...
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999988753

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.02  E-value=0.071  Score=39.40  Aligned_cols=21  Identities=38%  Similarity=0.610  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhC
Q 036158           21 NLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .++|.|++|+|||++++.+..
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            499999999999999988874

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.02  E-value=0.0045  Score=46.51  Aligned_cols=25  Identities=24%  Similarity=0.266  Sum_probs=21.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ....|+++|.+||||||+.+.|.+.
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~~   48 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEHQ   48 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999988743

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=95.98  E-value=0.11  Score=47.89  Aligned_cols=21  Identities=19%  Similarity=0.221  Sum_probs=19.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSI   39 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l   39 (225)
                      .-.++|+|++|+||||+++.+
T Consensus       662 g~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          662 QMFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             BCEEEEECCTTSSHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHH
Confidence            456899999999999999998

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.96  E-value=0.0037  Score=51.56  Aligned_cols=25  Identities=24%  Similarity=0.383  Sum_probs=21.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      +.-.++++|++|+|||||++.|.+.
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~~~  192 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALLEL  192 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            3457999999999999999998853

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=95.95  E-value=0.0063  Score=46.19  Aligned_cols=26  Identities=15%  Similarity=0.419  Sum_probs=20.8

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhC
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ..+...|.|+|++||||+|....|..
T Consensus        26 ~~k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           26 LAKAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             TTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34455677899999999999988764

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=95.90  E-value=0.0048  Score=44.46  Aligned_cols=21  Identities=43%  Similarity=0.651  Sum_probs=18.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~   40 (225)
                      -+|+|.|.+||||||+.+.|.
T Consensus         8 ~~i~l~G~~GsGKSTva~~La   28 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELG   28 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHH
Confidence            469999999999999998875

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=95.90  E-value=0.0034  Score=47.13  Aligned_cols=23  Identities=17%  Similarity=-0.025  Sum_probs=20.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhC
Q 036158           19 ERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .-.++++|++|+|||||+..|.+
T Consensus        20 G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           20 GVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999999986

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=95.88  E-value=0.0045  Score=46.75  Aligned_cols=21  Identities=38%  Similarity=0.691  Sum_probs=19.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~   40 (225)
                      +.|+|+|.+||||||+.+.|.
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La   26 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIK   26 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            679999999999999998885

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=95.88  E-value=0.0051  Score=46.31  Aligned_cols=22  Identities=32%  Similarity=0.502  Sum_probs=19.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ++|+++|++||||+|....|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999988764

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=95.86  E-value=0.0036  Score=47.81  Aligned_cols=24  Identities=13%  Similarity=0.173  Sum_probs=20.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           19 ERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      .-.++|+|++|+|||||+..|.+.
T Consensus        24 G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           24 GSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHH
Confidence            356899999999999999999863

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=95.86  E-value=0.00047  Score=52.86  Aligned_cols=23  Identities=30%  Similarity=0.381  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCc
Q 036158           21 NLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      .++|+|++|||||||+++|.+..
T Consensus        29 ~~~i~GpnGsGKSTll~~i~g~~   51 (227)
T 1qhl_A           29 VTTLSGGNGAGKSTTMAAFVTAL   51 (227)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            35789999999999999998754

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.83  E-value=0.0025  Score=58.60  Aligned_cols=25  Identities=28%  Similarity=0.529  Sum_probs=22.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      -+++|+|++|+|||||++.|.|...
T Consensus       700 eivaIiGpNGSGKSTLLklLaGll~  724 (986)
T 2iw3_A          700 SRIAVIGPNGAGKSTLINVLTGELL  724 (986)
T ss_dssp             CEEEECSCCCHHHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4789999999999999999998653

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.83  E-value=0.024  Score=47.56  Aligned_cols=25  Identities=20%  Similarity=0.409  Sum_probs=21.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      +..-|++.|++|+|||+|.+++.+.
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHH
Confidence            3467999999999999999999854

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=95.81  E-value=0.006  Score=47.22  Aligned_cols=23  Identities=35%  Similarity=0.718  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCC
Q 036158           20 RNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ..+++.|++|+||||++++|.+.
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            45999999999999999999753

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.79  E-value=0.0064  Score=46.54  Aligned_cols=26  Identities=23%  Similarity=0.272  Sum_probs=21.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhC
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ......|+|+|.+||||||+.+.|.+
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            44557899999999999999988864

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=95.76  E-value=0.0057  Score=58.44  Aligned_cols=27  Identities=30%  Similarity=0.437  Sum_probs=23.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      +.-.++|+|++|||||||++.|+|...
T Consensus       443 ~G~~vaivG~sGsGKSTll~ll~~~~~  469 (1321)
T 4f4c_A          443 AGQTVALVGSSGCGKSTIISLLLRYYD  469 (1321)
T ss_dssp             TTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred             CCcEEEEEecCCCcHHHHHHHhccccc
Confidence            345799999999999999999998764

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=95.73  E-value=0.047  Score=44.99  Aligned_cols=23  Identities=39%  Similarity=0.684  Sum_probs=20.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhC
Q 036158           19 ERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ...|+|.|++|+|||++++++..
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~  170 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAA  170 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999963

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.73  E-value=0.0065  Score=45.11  Aligned_cols=23  Identities=30%  Similarity=0.413  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCC
Q 036158           20 RNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ..+++.|++|+|||+|+.++...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            67999999999999999988753

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.73  E-value=0.0068  Score=48.60  Aligned_cols=24  Identities=29%  Similarity=0.446  Sum_probs=20.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           19 ERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ...|+|+|+||||||||...|...
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHh
Confidence            456899999999999999988643

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.71  E-value=0.0059  Score=45.78  Aligned_cols=21  Identities=33%  Similarity=0.618  Sum_probs=17.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~   40 (225)
                      ...+|+|++|+||||++.+|.
T Consensus        24 ~~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           24 GINLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHH
Confidence            456788999999999998864

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=95.71  E-value=0.0067  Score=45.99  Aligned_cols=25  Identities=16%  Similarity=0.343  Sum_probs=21.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ....++|.|++|+|||++++.+...
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999988743

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.69  E-value=0.0041  Score=49.40  Aligned_cols=24  Identities=17%  Similarity=0.296  Sum_probs=17.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhC
Q 036158           18 GERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      +.+.|+|.|++||||||+.+.|..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999988753

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.65  E-value=0.0079  Score=42.35  Aligned_cols=25  Identities=20%  Similarity=0.256  Sum_probs=21.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      ...|++.|++|+|||++..+|....
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhC
Confidence            3569999999999999999997543

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.65  E-value=0.0054  Score=44.48  Aligned_cols=24  Identities=33%  Similarity=0.522  Sum_probs=20.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           19 ERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ...++|.|++|+|||+++..+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999888643

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.65  E-value=0.0088  Score=48.41  Aligned_cols=24  Identities=38%  Similarity=0.511  Sum_probs=20.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           20 RNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      ..|+|+|+||||||||...|...-
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHC
Confidence            479999999999999999987543

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=95.64  E-value=0.0042  Score=55.16  Aligned_cols=22  Identities=32%  Similarity=0.542  Sum_probs=18.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 036158           19 ERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      .-.++|+|++|||||||++.++
T Consensus       348 Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          348 GTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             TSEEEEECSTTSSHHHHHTTTH
T ss_pred             CCEEEEEeeCCCCHHHHHHHHH
Confidence            3467899999999999998764

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=95.62  E-value=0.0061  Score=58.04  Aligned_cols=27  Identities=30%  Similarity=0.416  Sum_probs=23.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      +.-.++++|++|||||||++.|.|...
T Consensus       415 ~G~~~~ivG~sGsGKSTl~~ll~g~~~  441 (1284)
T 3g5u_A          415 SGQTVALVGNSGCGKSTTVQLMQRLYD  441 (1284)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345789999999999999999998764

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=95.59  E-value=0.0023  Score=53.29  Aligned_cols=20  Identities=30%  Similarity=0.429  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 036158           21 NLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~   40 (225)
                      .++|+|++|+|||||+++|.
T Consensus        62 ~~~lvG~NGaGKStLl~aI~   81 (415)
T 4aby_A           62 FCAFTGETGAGKSIIVDALG   81 (415)
T ss_dssp             EEEEEESHHHHHHHHTHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            78999999999999998874

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.56  E-value=0.0053  Score=56.50  Aligned_cols=25  Identities=28%  Similarity=0.416  Sum_probs=21.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      .-.++|+|++|+|||||++.|.+..
T Consensus       461 Ge~v~LiGpNGsGKSTLLk~LagG~  485 (986)
T 2iw3_A          461 ARRYGICGPNGCGKSTLMRAIANGQ  485 (986)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468999999999999999999543

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.54  E-value=0.011  Score=46.97  Aligned_cols=26  Identities=23%  Similarity=0.424  Sum_probs=21.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      .+...++++|++|+|||++.++|.+.
T Consensus        45 ~~~~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           45 RPIGSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             SCSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHHH
Confidence            34457999999999999999988754

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.50  E-value=0.006  Score=47.94  Aligned_cols=24  Identities=29%  Similarity=0.235  Sum_probs=20.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhC
Q 036158           18 GERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ..-.++|+|++|+|||||+..|.+
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH
Confidence            445789999999999999988875

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.48  E-value=0.013  Score=46.46  Aligned_cols=25  Identities=28%  Similarity=0.287  Sum_probs=20.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ...-+++.|++|+|||++.+++...
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3456777899999999999998743

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.46  E-value=0.011  Score=44.21  Aligned_cols=24  Identities=29%  Similarity=0.506  Sum_probs=20.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           19 ERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ...|+|+|+||+|||||...|...
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            456899999999999999998754

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.45  E-value=0.01  Score=47.05  Aligned_cols=25  Identities=24%  Similarity=0.468  Sum_probs=20.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .....++|.|++|+|||++.+++..
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            4456799999999999999987653

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.43  E-value=0.009  Score=47.32  Aligned_cols=22  Identities=27%  Similarity=0.525  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ..|+++|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998874

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=95.43  E-value=0.01  Score=48.67  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=20.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSI   39 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l   39 (225)
                      ....+|+|+|.+||||||++..|
T Consensus        31 ~~~~killlG~~~SGKST~~kq~   53 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQM   53 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHH
T ss_pred             cCccEEEEECCCCCcHHHHHHHH
Confidence            55789999999999999999875

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.41  E-value=0.0044  Score=53.68  Aligned_cols=26  Identities=23%  Similarity=0.377  Sum_probs=22.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      +...|+|+|.+||||||+++.|.+.-
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L  393 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARL  393 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhh
Confidence            45789999999999999999998653

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.41  E-value=0.0092  Score=44.35  Aligned_cols=21  Identities=24%  Similarity=0.406  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhC
Q 036158           21 NLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .|+|.|.+||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999988853

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=95.41  E-value=0.069  Score=48.26  Aligned_cols=27  Identities=26%  Similarity=0.505  Sum_probs=22.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      .+..-|+|.|++|+|||+|.+++.+..
T Consensus       236 ~~p~GILL~GPPGTGKT~LAraiA~el  262 (806)
T 3cf2_A          236 KPPRGILLYGPPGTGKTLIARAVANET  262 (806)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHTTT
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            344679999999999999999998643

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=95.39  E-value=0.068  Score=42.71  Aligned_cols=50  Identities=18%  Similarity=0.062  Sum_probs=31.6

Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCC
Q 036158          100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELED  152 (225)
Q Consensus       100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~  152 (225)
                      ...++|.+++|+++..+..... .+-+.+....  ...+++++|+||+|+..+
T Consensus        83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~--~~~~~~vivlnK~DL~~~  132 (307)
T 1t9h_A           83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVE--ANDIQPIICITKMDLIED  132 (307)
T ss_dssp             TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHH--TTTCEEEEEEECGGGCCC
T ss_pred             HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHH--HCCCCEEEEEECCccCch
Confidence            3457899999999974443333 2222332211  123788999999998765

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.39  E-value=0.0099  Score=46.94  Aligned_cols=23  Identities=35%  Similarity=0.618  Sum_probs=20.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhC
Q 036158           19 ERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ...+++.|++|+|||++++++.+
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHH
Confidence            46799999999999999999975

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.35  E-value=0.8  Score=36.28  Aligned_cols=21  Identities=19%  Similarity=0.325  Sum_probs=16.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhC
Q 036158           21 NLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~   41 (225)
                      -+++.|++|+|||++++++..
T Consensus        50 ~~L~~G~~G~GKT~la~~la~   70 (324)
T 3u61_B           50 IILHSPSPGTGKTTVAKALCH   70 (324)
T ss_dssp             EEEECSSTTSSHHHHHHHHHH
T ss_pred             EEEeeCcCCCCHHHHHHHHHH
Confidence            355556699999999999863

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.34  E-value=0.01  Score=45.62  Aligned_cols=33  Identities=21%  Similarity=0.288  Sum_probs=21.6

Q ss_pred             CCCCCCCCCCceeEEEEcCCCCCHHHHHHHHhC
Q 036158            9 DSKPTSPSNGERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus         9 ~~~~~~~~~~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      +-.+.........|++.|.+||||||+++.|..
T Consensus        17 ~~~~~~~~~~~~~i~~eG~~GsGKsT~~~~l~~   49 (236)
T 3lv8_A           17 NLYFQSNAMNAKFIVIEGLEGAGKSTAIQVVVE   49 (236)
T ss_dssp             ---------CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred             ccccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            334445556678899999999999999998863

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.32  E-value=0.013  Score=46.94  Aligned_cols=23  Identities=30%  Similarity=0.460  Sum_probs=19.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhC
Q 036158           19 ERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ...|+|+|+||||||||...|..
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCccCHHHHHHHHHH
Confidence            35688999999999999998863

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.32  E-value=0.0079  Score=42.26  Aligned_cols=23  Identities=17%  Similarity=0.225  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCC
Q 036158           20 RNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ..|++.|++|+|||++.+++...
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CcEEEECCCCccHHHHHHHHHHh
Confidence            56999999999999999988754

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.30  E-value=0.01  Score=48.09  Aligned_cols=22  Identities=27%  Similarity=0.382  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ..|+|+|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            5799999999999999988763

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=95.29  E-value=0.0089  Score=56.95  Aligned_cols=27  Identities=30%  Similarity=0.362  Sum_probs=23.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      +.-+++++|++|+|||||++.|.|...
T Consensus      1058 ~Ge~v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A         1058 KGQTLALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp             SSSEEEEECSSSTTHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            345789999999999999999998654

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.29  E-value=0.011  Score=47.92  Aligned_cols=20  Identities=35%  Similarity=0.629  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhC
Q 036158           22 LVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        22 i~v~G~~g~GKSSlin~l~~   41 (225)
                      +++.|++|+||||+++.|.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            99999999999999998876

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.29  E-value=0.0074  Score=48.55  Aligned_cols=20  Identities=35%  Similarity=0.534  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 036158           21 NLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~   40 (225)
                      ..+|+|++|+|||||+.+|.
T Consensus        26 ~~~i~G~NGsGKS~ll~ai~   45 (322)
T 1e69_A           26 VTAIVGPNGSGKSNIIDAIK   45 (322)
T ss_dssp             EEEEECCTTTCSTHHHHHHH
T ss_pred             cEEEECCCCCcHHHHHHHHH
Confidence            67899999999999999987

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.28  E-value=0.011  Score=46.94  Aligned_cols=24  Identities=25%  Similarity=0.500  Sum_probs=20.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           19 ERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ...|+|.|++|+|||++++++.+.
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCcCHHHHHHHHHHH
Confidence            456999999999999999999853

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=95.26  E-value=0.01  Score=49.06  Aligned_cols=25  Identities=32%  Similarity=0.481  Sum_probs=21.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ....++|+|++|+|||++++.|+..
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~   58 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLR   58 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHH
Confidence            4578999999999999999998753

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.26  E-value=0.011  Score=47.57  Aligned_cols=22  Identities=27%  Similarity=0.432  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ..|+|+|++||||||+...|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988864

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.22  E-value=0.0087  Score=46.58  Aligned_cols=25  Identities=20%  Similarity=0.291  Sum_probs=21.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .....|+|.|..||||||+++.|..
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~   46 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQ   46 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHH
Confidence            4457899999999999999988874

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.18  E-value=0.015  Score=45.38  Aligned_cols=26  Identities=27%  Similarity=0.307  Sum_probs=22.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      .....+++.|++|+|||++..++...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            44578999999999999999998753

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=95.18  E-value=0.013  Score=47.49  Aligned_cols=20  Identities=35%  Similarity=0.665  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 036158           21 NLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~   40 (225)
                      ..+|+|++|+||||++.+|.
T Consensus        25 ~~~i~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           25 INLIIGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            45788999999999999874

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=95.17  E-value=0.012  Score=48.76  Aligned_cols=22  Identities=32%  Similarity=0.526  Sum_probs=19.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 036158           19 ERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      ...|+|+|+||+|||||...|.
T Consensus         2 ~~~i~i~GptgsGKttla~~La   23 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLA   23 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHH
T ss_pred             CcEEEEECcchhhHHHHHHHHH
Confidence            3578999999999999998875

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=95.17  E-value=0.15  Score=41.58  Aligned_cols=85  Identities=14%  Similarity=0.182  Sum_probs=43.7

Q ss_pred             CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcE
Q 036158          101 KDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC  180 (225)
Q Consensus       101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (225)
                      ..++|.+++|....+..+...  +-+.|...  .....++++|+||+|+..+.   ..+..++     |....+..|.++
T Consensus       128 ~anvD~v~iv~a~~P~~~~~~--i~r~L~~a--~~~~~~~iivlNK~DL~~~~---~~~~~~~-----~~~~y~~~G~~v  195 (358)
T 2rcn_A          128 AANIDQIVIVSAILPELSLNI--IDRYLVGC--ETLQVEPLIVLNKIDLLDDE---GMDFVNE-----QMDIYRNIGYRV  195 (358)
T ss_dssp             EECCCEEEEEEESTTTCCHHH--HHHHHHHH--HHHTCEEEEEEECGGGCCHH---HHHHHHH-----HHHHHHTTTCCE
T ss_pred             HhcCCEEEEEEeCCCCCCHHH--HHHHHHHH--HhcCCCEEEEEECccCCCch---hHHHHHH-----HHHHHHhCCCcE
Confidence            357799998876653333332  22222111  11136779999999987542   1122223     444555556554


Q ss_pred             EEeeCCCccccccHHHHHHHHHH
Q 036158          181 VLFDNKTKDTAKRTEQVGKLLSL  203 (225)
Q Consensus       181 ~~~~~~~~~~~~~~~~v~~l~~~  203 (225)
                      +.++      +.++.++++|...
T Consensus       196 ~~~S------a~~~~gl~~L~~~  212 (358)
T 2rcn_A          196 LMVS------SHTQDGLKPLEEA  212 (358)
T ss_dssp             EECB------TTTTBTHHHHHHH
T ss_pred             EEEe------cCCCcCHHHHHHh
Confidence            4433      2334555655543

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.10  E-value=0.012  Score=44.31  Aligned_cols=22  Identities=23%  Similarity=0.404  Sum_probs=19.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ..++|.|++|+||||+++.+..
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999988864

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=95.10  E-value=0.009  Score=50.07  Aligned_cols=22  Identities=27%  Similarity=0.379  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      -.++|+|++|+|||||+++|.+
T Consensus        27 ~~~~i~G~nG~GKstll~ai~~   48 (430)
T 1w1w_A           27 NFTSIIGPNGSGKSNMMDAISF   48 (430)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4678999999999999999864

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=95.08  E-value=0.011  Score=50.66  Aligned_cols=24  Identities=29%  Similarity=0.482  Sum_probs=21.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhC
Q 036158           18 GERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      +...++|.|.||||||+++|+|..
T Consensus       166 ~~pHlLIaG~TGSGKSt~L~~li~  189 (512)
T 2ius_A          166 KMPHLLVAGTTGSGASVGVNAMIL  189 (512)
T ss_dssp             GSCSEEEECCTTSSHHHHHHHHHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999999874

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.07  E-value=0.0091  Score=48.69  Aligned_cols=25  Identities=20%  Similarity=0.256  Sum_probs=21.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      .-.++|+|++|+|||||++.|.+..
T Consensus       131 G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          131 QAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578999999999999999988654

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=95.04  E-value=0.012  Score=48.19  Aligned_cols=21  Identities=19%  Similarity=0.224  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhC
Q 036158           21 NLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .++++|++|+||||++++|.+
T Consensus        28 ~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           28 VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHH
Confidence            788999999999999999864

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.01  E-value=0.013  Score=43.98  Aligned_cols=23  Identities=30%  Similarity=0.424  Sum_probs=19.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhC
Q 036158           19 ERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ...|+|.|.+||||||+.+.|..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999988753

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=94.99  E-value=0.015  Score=44.54  Aligned_cols=23  Identities=39%  Similarity=0.566  Sum_probs=19.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHh
Q 036158           18 GERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      -+++++|+|.+||||||+...|.
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~   29 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIK   29 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHH
Confidence            35899999999999999998875

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=94.99  E-value=0.016  Score=44.46  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ..|++.|..||||||+++.|..
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	225
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	5e-27
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	2e-09
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	4e-05
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	1e-04
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	0.002
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	0.003
d1puja_	273	c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subti	0.004

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score =  101 bits (253), Expect = 5e-27
 Identities = 41/225 (18%), Positives = 85/225 (37%), Gaps = 25/225 (11%)

Query: 19  ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPG 78
              ++++G+ G GKS+T NSI+G+R        S   +   + R+    G  +N+IDTPG
Sbjct: 32  SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR--AGFTLNIIDTPG 89

Query: 79  LFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSV-RNRFSEEEGAAIHILESLFGKKIS 137
           L +    ++     I     +    I  +L V  +   R    +      +   FGK I 
Sbjct: 90  LIEGGYINDMALNIIKSF--LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIW 147

Query: 138 DYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC----------VLFDN-- 185
           +  IV  T       +    +++   +  + L ++++   +            VL +N  
Sbjct: 148 NKAIVALTHAQFSPPDGLPYDEFF-SKRSEALLQVVRSGASLKKDAQASDIPVVLIENSG 206

Query: 186 --KTKDTAKR-----TEQVGKLLSLVNSVIVQNGGQPYTDEIFAE 223
                D+ ++        +  L+  +  V +      + D+   +
Sbjct: 207 RCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVDKNLID 251

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.4 bits (130), Expect = 2e-09
 Identities = 30/162 (18%), Positives = 59/162 (36%), Gaps = 15/162 (9%)

Query: 16  SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTC-EMQRTMLKDGQVVNVI 74
            +   N+ + G TG+GKS+  N++ G    +  A  +GV +   E       +   V   
Sbjct: 53  DSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFW 112

Query: 75  DTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK 134
           D PG+  ++   +   +++                +     RF + +   I I +++   
Sbjct: 113 DLPGIGSTNFPPDTYLEKMKFY--------EYDFFIIISATRFKKND---IDIAKAI--S 159

Query: 135 KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC 176
            +      V T  D    N+   E     +  K L++I   C
Sbjct: 160 MMKKEFYFVRTKVDSDITNEADGEPQT-FDKEKVLQDIRLNC 200

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 40.7 bits (94), Expect = 4e-05
 Identities = 24/144 (16%), Positives = 54/144 (37%), Gaps = 3/144 (2%)

Query: 24  LVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS 83
           LVG    GKS   + +   +     A     T    +      DG+   + D PGL + +
Sbjct: 6   LVGFPSVGKSTLLSVVSSAKP--KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGA 63

Query: 84  ADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVV 143
                +  + ++ I  T   I  V+ +  +  R   ++   I+   S +  ++++   ++
Sbjct: 64  HQGVGLGHQFLRHIERT-RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQII 122

Query: 144 FTGGDELEDNDETLEDYLGRECPK 167
                ++ +  E LE +  +    
Sbjct: 123 VANKMDMPEAAENLEAFKEKLTDD 146

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 39.2 bits (90), Expect = 1e-04
 Identities = 14/85 (16%), Positives = 37/85 (43%), Gaps = 2/85 (2%)

Query: 21  NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLF 80
           ++ LVG    GKS+   ++         A     T +  +    + + +   + D PG+ 
Sbjct: 3   DVGLVGYPNAGKSSLLAAMTRAHP--KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGII 60

Query: 81  DSSADSEFVSKEIVKCIGMTKDGIH 105
           + +++ + +  E ++ I  T+  ++
Sbjct: 61  EGASEGKGLGLEFLRHIARTRVLLY 85

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 37/199 (18%), Positives = 64/199 (32%), Gaps = 18/199 (9%)

Query: 10  SKPTSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ 69
           SKP         + +VGR   GKS   N+IL K   ++       T    +   +  DG+
Sbjct: 1   SKP--EITDAIKVAIVGRPNVGKSTLFNAILNKE--RALVSPIPGTTRDPVDDEVFIDGR 56

Query: 70  VVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILE 129
               +DT GL                      D I    VV  V +           +  
Sbjct: 57  KYVFVDTAGLRRK--SRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAG 114

Query: 130 SLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKD 189
            +  ++     +VVF   D +        +    E  K  +E L   D   ++F      
Sbjct: 115 LM--ERRGRASVVVFNKWDLVVH-----REKRYDEFTKLFREKLYFIDYSPLIF-----T 162

Query: 190 TAKRTEQVGKLLSLVNSVI 208
           +A +   + +++  +N   
Sbjct: 163 SADKGWNIDRMIDAMNLAY 181

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 35.1 bits (79), Expect = 0.003
 Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 7/143 (4%)

Query: 23  VLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDS 82
           +  GR+  GKS     + GK+  + K    GVT+              +           
Sbjct: 4   IFAGRSNVGKSTLIYRLTGKKVRRGKRP--GVTRKIIEIEWKNHKIIDMPGFGFMMGLPK 61

Query: 83  SADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILES-----LFGKKIS 137
                   + +       K+   AVLVV         +       +        F +++ 
Sbjct: 62  EVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD 121

Query: 138 DYMIVVFTGGDELEDNDETLEDY 160
              IV     D++++  E +   
Sbjct: 122 IPTIVAVNKLDKIKNVQEVINFL 144

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

 Score = 35.2 bits (80), Expect = 0.004
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 24  LVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS 83
           ++G    GKS   N +  K   K+     G        +  +K G+ + ++DTPG+    
Sbjct: 117 IIGIPNVGKSTLINRLAKKNIAKT-----GDRPGITTSQQWVKVGKELELLDTPGILWPK 171

Query: 84  ADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEE 120
            + E V   +    G  KD I  +  V     RF EE
Sbjct: 172 FEDELVGLRLA-VTGAIKDSIINLQDVAVFGLRFLEE 207

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	225
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.93
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.92
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.88
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.87
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.87
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.86
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.84
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.84
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.84
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.84
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.83
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.82
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.81
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.81
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.8
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.8
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.79
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.78
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.77
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.77
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.77
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.76
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.76
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.76
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.75
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.75
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.75
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.74
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.74
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.74
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.74
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.74
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.74
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.73
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.73
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.73
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.73
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.73
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.72
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.72
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.71
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.71
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.71
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.7
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.7
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.7
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.7
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.69
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.68
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.67
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.67
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.67
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.66
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.66
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.65
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.65
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.65
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.64
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.64
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.62
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.62
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.62
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.59
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.56
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.56
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.56
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.51
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.51
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.48
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.48
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.45
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.45
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.4
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.26
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.23
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.22
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.22
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.2
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	99.15
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.98
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.96
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.85
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.84
d1okkd2	207	GTPase domain of the signal recognition particle r	98.71
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.69
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.68
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.64
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.55
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	98.5
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.06
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.87
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.64
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.54
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.51
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.47
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.45
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.44
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.42
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.42
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.41
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.41
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.4
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.37
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.36
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.33
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.3
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.29
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.28
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.27
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.26
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.25
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.25
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.24
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.23
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.22
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.21
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.17
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.16
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.16
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.15
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.14
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.13
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.1
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.1
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.1
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.07
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.05
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.04
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.01
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.96
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.93
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.93
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.93
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.93
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.93
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.91
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.91
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.91
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.88
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.88
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.86
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.86
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.85
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.84
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.82
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.82
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.8
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.77
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.76
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.75
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.75
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.71
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.71
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.63
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.58
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.55
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.49
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.47
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.43
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.39
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.39
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.37
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.36
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.28
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.26
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.2
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.16
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.12
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.06
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.03
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.03
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.0
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.79
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.77
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	95.75
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.7
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.64
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.64
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.64
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.64
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.62
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.58
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.58
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.57
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.56
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.55
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.5
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.49
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.45
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.45
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.44
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.37
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.33
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.28
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.27
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	95.26
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.24
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.09
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.98
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.91
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.77
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	94.69
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	94.67
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	94.54
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	94.36
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.35
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.32
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.28
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.21
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	93.93
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.67
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	93.6
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.54
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	93.53
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	93.53
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.46
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	93.4
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	93.29
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	93.2
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	93.11
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	93.1
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	92.8
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	92.71
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	92.68
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	92.65
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	92.42
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	92.35
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	92.34
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	91.74
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	91.71
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	91.7
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	91.69
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	91.64
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	91.2
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	91.19
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	90.64
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	90.63
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	90.49
d1xpua3	289	Transcription termination factor Rho, ATPase domai	90.1
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	89.39
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	88.34
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	88.17
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	88.12
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	87.9
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.75
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.12
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	86.68
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	86.33
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	85.37
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	84.27
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	83.79
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	82.93
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	81.5
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	80.9
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	80.55

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.93  E-value=2e-25  Score=174.77  Aligned_cols=200  Identities=20%  Similarity=0.292  Sum_probs=149.3

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ....++|+|+|.+|+|||||+|+|+|...+.+. ...++|+.+..+...+ .+..+.|+||||+.+.....++....+..
T Consensus        29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs-~~~~~T~~~~~~~~~~-~g~~i~viDTPGl~~~~~~~~~~~~~i~~  106 (257)
T d1h65a_          29 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSIS-PFQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKS  106 (257)
T ss_dssp             TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCcHHHHHHHHhCCCceeec-CCCCcceeEEEEEEEe-ccEEEEEEeeecccCCcchHHHHHHHHHH
Confidence            356799999999999999999999999988665 3567888888888888 88999999999999876656655555544


Q ss_pred             HHhhcCCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRN-RFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      +.  ....+|+++||++.+. +++..+...++.+.+.|+.+..+++++|+||+|..++.....++++.. ....+..++.
T Consensus       107 ~~--~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~~e~~~~~-~~~~l~~~i~  183 (257)
T d1h65a_         107 FL--LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK-RSEALLQVVR  183 (257)
T ss_dssp             HT--TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH-HHHHHHHHHH
T ss_pred             HH--hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCcHHHHHHh-hhHHHHHHHH
Confidence            43  3447899999998753 689999999999999999998899999999999987665677777655 3344566666


Q ss_pred             HcCC----------cEEEeeCCCcc--c--c-----ccHHHHHHHHHHHHHHHHHcCCCCCCHHH
Q 036158          175 LCDN----------RCVLFDNKTKD--T--A-----KRTEQVGKLLSLVNSVIVQNGGQPYTDEI  220 (225)
Q Consensus       175 ~~~~----------~~~~~~~~~~~--~--~-----~~~~~v~~l~~~i~~~~~~~~~~~~~~~~  220 (225)
                      .|..          +...+.+....  .  .     .....+.+++..+.+++...++..+.+..
T Consensus       184 ~~~~~~~~~~~~~~~~~l~en~~~~~~n~~~ekvlp~~~~~~~~lv~~i~~~~~~~~~~i~~~~~  248 (257)
T d1h65a_         184 SGASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVDKN  248 (257)
T ss_dssp             HHTTCCTTSGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTSSSCCEECCHH
T ss_pred             HHhhhhhhhccccCCEEEEecCCcccccccccccccCCcchHHHHHHHHHHHHHcCCCCccccHH
Confidence            6532          22233322110  0  0     01236889999999999888776655443

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=4.7e-24  Score=158.09  Aligned_cols=166  Identities=19%  Similarity=0.176  Sum_probs=118.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (225)
                      ..|+|+|.+|+|||||+|+|++.+..... ..+++|.......... .+..+.++||||+.......   ...+...+..
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~-~~~~tt~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~---~~~~~~~~~~   80 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVKVAPIS-PRPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPMDAL---GEFMDQEVYE   80 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCC-SSSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCCSHH---HHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeec-ccCCcccccccceeee-eeeeeeeccccccccccccc---chhccccccc
Confidence            47999999999999999999998754443 3556677777666666 78899999999998654322   2333444445


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc
Q 036158          100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR  179 (225)
Q Consensus       100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (225)
                      +...+|++|+|+|+..+.+..+..+++.+++...   ..|+++|+||+|+.+..    ++..        ..+.+..+..
T Consensus        81 ~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~---~~piilv~NK~Dl~~~~----~~~~--------~~~~~~~~~~  145 (178)
T d1wf3a1          81 ALADVNAVVWVVDLRHPPTPEDELVARALKPLVG---KVPILLVGNKLDAAKYP----EEAM--------KAYHELLPEA  145 (178)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTT---TSCEEEEEECGGGCSSH----HHHH--------HHHHHTSTTS
T ss_pred             ccccccceeeeechhhhhcccccchhhheecccc---chhhhhhhcccccccCH----HHHH--------HHHHhhcccC
Confidence            5678899999999987888887777777766433   37999999999986542    1111        1122222221


Q ss_pred             EEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          180 CVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       180 ~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      .+     ...||.++.++++|++.|.+++++
T Consensus       146 ~~-----~~iSA~~~~gi~~L~~~i~~~lpe  171 (178)
T d1wf3a1         146 EP-----RMLSALDERQVAELKADLLALMPE  171 (178)
T ss_dssp             EE-----EECCTTCHHHHHHHHHHHHTTCCB
T ss_pred             ce-----EEEecCCCCCHHHHHHHHHHhCCC
Confidence            11     124778899999999999988865

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.88  E-value=1.4e-22  Score=150.56  Aligned_cols=167  Identities=20%  Similarity=0.191  Sum_probs=108.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHH----HHHHHHH
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFV----SKEIVKC   96 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~----~~~~~~~   96 (225)
                      .|+++|.+|+|||||+|+|++.... + ...+++|+....  +.+   ..+.++||||++.........    ...+..+
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~-~-~~~~g~T~~~~~--~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~   74 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVR-R-GKRPGVTRKIIE--IEW---KNHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   74 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCS-S-SSSTTCTTSCEE--EEE---TTEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCce-e-eCCCCEeecccc--ccc---ccceecccCCceeccccccccccccchhhhhh
Confidence            5999999999999999999998753 2 345566766432  333   347899999997665544333    3334445


Q ss_pred             HhhcCCCccEEEEEEeCCC-----------CCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcC
Q 036158           97 IGMTKDGIHAVLVVFSVRN-----------RFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGREC  165 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~-----------~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~  165 (225)
                      +......+|++++|+|+..           .....+.++++.+.+.     ..|+++|+||+|+.+......+.+     
T Consensus        75 ~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~-----~~p~iiv~NK~D~~~~~~~~~~~~-----  144 (184)
T d2cxxa1          75 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL-----DIPTIVAVNKLDKIKNVQEVINFL-----  144 (184)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT-----TCCEEEEEECGGGCSCHHHHHHHH-----
T ss_pred             hhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc-----CCCEEEEEeeeehhhhHHHHHHHH-----
Confidence            5556677899999999752           2344455566666552     379999999999876532111111     


Q ss_pred             CchHHHHHHH-cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          166 PKPLKEILQL-CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       166 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                          .+.+.. ....   .....+.||.++.++++|++.|.++++|+
T Consensus       145 ----~~~~~~~~~~~---~~~~~~vSA~~g~gi~~L~~~i~~~l~e~  184 (184)
T d2cxxa1         145 ----AEKFEVPLSEI---DKVFIPISAKFGDNIERLKNRIFEVIRER  184 (184)
T ss_dssp             ----HHHHTCCGGGH---HHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             ----HHHhccccccc---CCeEEEEECCCCCCHHHHHHHHHHHccCC
Confidence                111110 0000   00112457778899999999999999874

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=2.3e-22  Score=149.71  Aligned_cols=174  Identities=19%  Similarity=0.289  Sum_probs=113.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcH-----HHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSE-----FVSK   91 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~-----~~~~   91 (225)
                      ...++|+|+|++|+|||||+|+|++........ ...+|..+....+.+ ++..+.++||||+........     ....
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~-~~~t~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   83 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSP-IPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNY   83 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-CC------CCEEEEE-TTEEEEESSCSCC-----------CCSCCH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCcceeec-ccccccccceeeecc-CCceeeeeccCCccccccccccccccchhH
Confidence            346999999999999999999999987654433 456666666666777 788999999999864321111     0011


Q ss_pred             HHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158           92 EIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE  171 (225)
Q Consensus        92 ~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~  171 (225)
                      .+...+    ..+|++++|+|+..+.......++..+...     ..|+++|+||+|..........++.+.     +.+
T Consensus        84 ~~~~~~----~~~dvii~v~d~~~~~~~~~~~~~~~~~~~-----~~~~i~v~nK~D~~~~~~~~~~~~~~~-----~~~  149 (186)
T d1mkya2          84 RVVDSI----EKADVVVIVLDATQGITRQDQRMAGLMERR-----GRASVVVFNKWDLVVHREKRYDEFTKL-----FRE  149 (186)
T ss_dssp             HHHHHH----HHCSEEEEEEETTTCCCHHHHHHHHHHHHT-----TCEEEEEEECGGGSTTGGGCHHHHHHH-----HHH
T ss_pred             HHHHHH----hcCCEEEEeecccccchhhHHHHHHHHHHc-----CCceeeeccchhhhcchhhhhhhHHHH-----HHH
Confidence            222222    346999999999878887777777776653     379999999999876543334444333     333


Q ss_pred             HHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          172 ILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      .+..++.     .+..+.||.++.++++|++.|.+.....
T Consensus       150 ~~~~~~~-----~~i~~vSa~~g~gv~~L~~~i~~~~~~~  184 (186)
T d1mkya2         150 KLYFIDY-----SPLIFTSADKGWNIDRMIDAMNLAYASY  184 (186)
T ss_dssp             HCGGGTT-----SCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HhcccCC-----CeEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            3333332     1233567788899999999998887764

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=1.4e-21  Score=144.73  Aligned_cols=170  Identities=12%  Similarity=0.126  Sum_probs=108.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (225)
                      ..|+++|.+|+|||||+|+|++......  ...+.|+...........+..+.++||||+.............+..    
T Consensus         2 ~~VaivG~~nvGKSTLin~L~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~----   75 (180)
T d1udxa2           2 ADVGLVGYPNAGKSSLLAAMTRAHPKIA--PYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLR----   75 (180)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEEC--CCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHH----
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCcee--ccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHH----
Confidence            3599999999999999999998876433  2344555555544555467789999999987543222222222222    


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc
Q 036158          100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR  179 (225)
Q Consensus       100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (225)
                      ....+++++++++..............++.........+|+++|+||+|+....  ..++         +.+.+...+.+
T Consensus        76 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~--~~~~---------~~~~~~~~~~~  144 (180)
T d1udxa2          76 HIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEE--AVKA---------LADALAREGLA  144 (180)
T ss_dssp             HHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHH--HHHH---------HHHHHHTTTSC
T ss_pred             HHHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhHH--HHHH---------HHHHHHhcCCe
Confidence            234669999999986332222223333443322222347999999999987542  2222         23334443444


Q ss_pred             EEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          180 CVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       180 ~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                      ++      ..||.++.|+++|++.|.+++++..
T Consensus       145 ~~------~iSA~tg~gid~L~~~i~~~l~~~~  171 (180)
T d1udxa2         145 VL------PVSALTGAGLPALKEALHALVRSTP  171 (180)
T ss_dssp             EE------ECCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred             EE------EEEcCCCCCHHHHHHHHHHHHhhcC
Confidence            43      3466788999999999999997653

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.86  E-value=7.7e-21  Score=142.47  Aligned_cols=172  Identities=16%  Similarity=0.262  Sum_probs=110.6

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcH--HHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSE--FVSKEI   93 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~--~~~~~~   93 (225)
                      ....++|+|+|++|+|||||+|+|+|..........++.|.....  ...  ...+.++|++|.+.......  +....+
T Consensus        20 ~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~--~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~   95 (195)
T d1svia_          20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNF--YII--NDELHFVDVPGYGFAKVSKSEREAWGRM   95 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEE--EEE--TTTEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccc--ccc--cccceEEEEEeeccccccccccchhhhH
Confidence            344578999999999999999999987643232333344433322  222  45677899998875543332  222333


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                      ..........++++++|+|+..+++..+.++++.+++.     ..|+++|+||+|+.+..  ..++..+.     +++.+
T Consensus        96 ~~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~-----~~piivv~NK~D~~~~~--~~~~~~~~-----~~~~l  163 (195)
T d1svia_          96 IETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY-----GIPVIVIATKADKIPKG--KWDKHAKV-----VRQTL  163 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCGG--GHHHHHHH-----HHHHH
T ss_pred             Hhhhhccccchhhhhhhhhccccccccccccccccccc-----cCcceechhhccccCHH--HHHHHHHH-----HHHHh
Confidence            34444556678999999999878888888888888764     37999999999987553  55555444     44444


Q ss_pred             HHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          174 QLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       174 ~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      ..-.. .++      ..||.++.|+++|++.|.+++.
T Consensus       164 ~~~~~~~~~------~~SA~~~~gi~el~~~i~~~l~  194 (195)
T d1svia_         164 NIDPEDELI------LFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             TCCTTSEEE------ECCTTTCTTHHHHHHHHHHHHT
T ss_pred             cccCCCCEE------EEeCCCCCCHHHHHHHHHHHhC
Confidence            32221 222      3456677999999999988863

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.84  E-value=3.3e-20  Score=136.12  Aligned_cols=167  Identities=19%  Similarity=0.237  Sum_probs=107.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT  100 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (225)
                      +|+|+|++|+|||||+|+|+|...... ...++.|.......+.. ....+.++||||+.+......  ...........
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~-~~~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~--~~~~~~~~~~~   77 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIV-EDEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNPQDII--SQKMKEVTLNM   77 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTSSGGGCC--CHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCccee-cccCceeeccccccccc-cccccccccccceeeeecccc--ccccccccccc
Confidence            699999999999999999998775433 23455565555555555 677899999999876432211  12222223333


Q ss_pred             CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcE
Q 036158          101 KDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRC  180 (225)
Q Consensus       101 ~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (225)
                      ...+|+++++++........+..++..+++.     ..|+++|+||+|.....   -.+.        ..++.+ .+.  
T Consensus        78 ~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~-----~~pviiv~NK~Dl~~~~---~~~~--------~~~~~~-~~~--  138 (171)
T d1mkya1          78 IREADLVLFVVDGKRGITKEDESLADFLRKS-----TVDTILVANKAENLREF---EREV--------KPELYS-LGF--  138 (171)
T ss_dssp             HTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-----TCCEEEEEESCCSHHHH---HHHT--------HHHHGG-GSS--
T ss_pred             cccCcEEEEeecccccccccccccccccccc-----cccccccchhhhhhhhh---hhHH--------HHHHHh-cCC--
Confidence            4577999999999878888887777777653     37999999999975321   1111        122222 221  


Q ss_pred             EEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158          181 VLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG  213 (225)
Q Consensus       181 ~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~  213 (225)
                         ....+.||+++.++++|++.|.+.+++...
T Consensus       139 ---~~~i~iSAk~g~gid~L~~~i~~~l~e~~~  168 (171)
T d1mkya1         139 ---GEPIPVSAEHNINLDTMLETIIKKLEEKGL  168 (171)
T ss_dssp             ---CSCEECBTTTTBSHHHHHHHHHHHHHHTTC
T ss_pred             ---CCeEEEecCCCCCHHHHHHHHHHhCCCCCC
Confidence               123456788899999999999999988754

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.84  E-value=9.7e-21  Score=140.15  Aligned_cols=168  Identities=20%  Similarity=0.253  Sum_probs=109.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccC-----CCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKA-----GSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKE   92 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~-----~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~   92 (225)
                      +.++|+++|++|+|||||+|+|++........     ...+.|.......+.+ .+..+.++||||..           .
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~d~~g~~-----------~   71 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHA-----------D   71 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHH-----------H
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeecccccccccc-CCcccccccccccc-----------c
Confidence            46799999999999999999999755322111     1112333333344555 77899999999954           2


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158           93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI  172 (225)
Q Consensus        93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (225)
                      +..........+|++++|+++.++....+++.+..+.+.     ..|+++|+||+|.....  ..+.....     .+++
T Consensus        72 ~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~-----~~p~iiv~NKiD~~~~~--~~~~~~~~-----~~~~  139 (179)
T d1wb1a4          72 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF-----NIPIIVVITKSDNAGTE--EIKRTEMI-----MKSI  139 (179)
T ss_dssp             HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCBCEEEECTTSSCHH--HHHHHHHH-----HHHH
T ss_pred             cccchhhhhhhccccccccccccccchhhhhhhhhhhhc-----CCcceeccccccccCHH--HHHHHHHH-----HHHH
Confidence            333333455678999999999878887777777666553     37999999999987553  33333222     4445


Q ss_pred             HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          173 LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ++......  ..+..+.||.++.++++|++.|.+.+.+.
T Consensus       140 ~~~~~~~~--~~~iv~iSA~~g~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         140 LQSTHNLK--NSSIIPISAKTGFGVDELKNLIITTLNNA  176 (179)
T ss_dssp             HHHSSSGG--GCCEEECCTTTCTTHHHHHHHHHHHHHHS
T ss_pred             HHHhhcCC--CCeEEEEEccCCcCHHHHHHHHHhcCCcc
Confidence            54432210  11223567788899999999999888765

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=5.6e-21  Score=138.76  Aligned_cols=158  Identities=18%  Similarity=0.194  Sum_probs=106.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (225)
                      ++|+++|.+|+|||||+|+|++.+..... ..++++.......+.+ .+..+.++||||+.+......   .........
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~---~~~~~~~~~   76 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDVLREHIHI-DGMPLHIIDTAGLREASDEVE---RIGIERAWQ   76 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSTTCCCSCEEEEEEE-TTEEEEEEECCCCSCCSSHHH---HHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEee-cccccccceEeeeeec-cCceeeeccccccccccccch---hHHHHHHHH
Confidence            78999999999999999999998764433 3455566655666666 788999999999987542222   222222334


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc
Q 036158          100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR  179 (225)
Q Consensus       100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (225)
                      +...+|+++++++............+..+.+....  ..|+++|+||+|+.... ..+.                ..+. 
T Consensus        77 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~iilv~NK~Dl~~~~-~~~~----------------~~~~-  136 (161)
T d2gj8a1          77 EIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPA--KLPITVVRNKADITGET-LGMS----------------EVNG-  136 (161)
T ss_dssp             HHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCT--TCCEEEEEECHHHHCCC-CEEE----------------EETT-
T ss_pred             HHHhccccceeeccccccchhhhhhhhhhhhhccc--ccceeeccchhhhhhhH-HHHH----------------HhCC-
Confidence            45578999999999766555555555544443332  47999999999975542 1110                1111 


Q ss_pred             EEEeeCCCccccccHHHHHHHHHHHHH
Q 036158          180 CVLFDNKTKDTAKRTEQVGKLLSLVNS  206 (225)
Q Consensus       180 ~~~~~~~~~~~~~~~~~v~~l~~~i~~  206 (225)
                      .    ...+.||+++.++++|++.|.+
T Consensus       137 ~----~~~~iSAk~~~gi~~L~~~l~~  159 (161)
T d2gj8a1         137 H----ALIRLSARTGEGVDVLRNHLKQ  159 (161)
T ss_dssp             E----EEEECCTTTCTTHHHHHHHHHH
T ss_pred             C----cEEEEECCCCCCHHHHHHHHHh
Confidence            1    1224577888999999999865

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.84  E-value=4.2e-20  Score=138.24  Aligned_cols=170  Identities=18%  Similarity=0.196  Sum_probs=118.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcc--------------ccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRA--------------FKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDS   82 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~--------------~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~   82 (225)
                      +++++|+++|+.++|||||+++|++...              ........+.|.......+.+ .++.+.++||||+.+ 
T Consensus         1 kp~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~-~~~~~~~iDtPGh~~-   78 (196)
T d1d2ea3           1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHAD-   78 (196)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHHH-
T ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEe-ceeeEEeecCcchHH-
Confidence            4678999999999999999999985210              001122356777777778888 889999999999653 


Q ss_pred             CCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhh
Q 036158           83 SADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLG  162 (225)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~  162 (225)
                                +...+......+|++++|+|+.++....+++.+..+... +.   +|++|++||+|...+. ..++.+..
T Consensus        79 ----------f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~-~~---~~iIv~iNK~D~~~~~-~~~~~i~~  143 (196)
T d1d2ea3          79 ----------YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI-GV---EHVVVYVNKADAVQDS-EMVELVEL  143 (196)
T ss_dssp             ----------HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT-TC---CCEEEEEECGGGCSCH-HHHHHHHH
T ss_pred             ----------HHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHh-cC---CcEEEEEecccccccH-HHHHHHHH
Confidence                      333444566788999999999988988888888777664 22   6889999999987542 34555554


Q ss_pred             hcCCchHHHHHHHcCCcEEEeeCCCccccccH----------HHHHHHHHHHHHHHH
Q 036158          163 RECPKPLKEILQLCDNRCVLFDNKTKDTAKRT----------EQVGKLLSLVNSVIV  209 (225)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~v~~l~~~i~~~~~  209 (225)
                      +     ++.++..++...-. -...+.|+..+          .++.+|++.|.+.++
T Consensus       144 ~-----i~~~l~~~~~~~~~-~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP  194 (196)
T d1d2ea3         144 E-----IRELLTEFGYKGEE-TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (196)
T ss_dssp             H-----HHHHHHHTTSCTTT-SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             H-----HHHHHHHhCCCccc-CEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence            5     67777666531000 00112344444          588999999877654

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.83  E-value=9e-21  Score=140.89  Aligned_cols=171  Identities=16%  Similarity=0.125  Sum_probs=106.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (225)
                      ..|+|+|++|+|||||+|+|++......  ...++|+........++++..+.++||||+.............+...+..
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~--~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~   79 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSAKPKIA--DYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIER   79 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEES--STTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCcee--cCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHH
Confidence            3699999999999999999998876322  34556666666666665677899999999854333333333444443333


Q ss_pred             cCCCccEEEEEEeCCC--CCCHHHHHH-HHHHHHHhccc-ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158          100 TKDGIHAVLVVFSVRN--RFSEEEGAA-IHILESLFGKK-ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus       100 ~~~~~~~ii~v~~~~~--~~~~~~~~~-~~~l~~~~~~~-~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                          ++.++++++...  .....+... ........... ..+|+++|+||+|.....     +.        +..+.+.
T Consensus        80 ----~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~-----~~--------~~~~~~~  142 (185)
T d1lnza2          80 ----TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA-----EN--------LEAFKEK  142 (185)
T ss_dssp             ----CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH-----HH--------HHHHHHH
T ss_pred             ----hhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH-----HH--------HHHHHHH
Confidence                377777776542  222222222 22222222222 347899999999976431     11        2223333


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG  213 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~  213 (225)
                      .+..+    .....||.++.|+++|++.|.+++++...
T Consensus       143 ~~~~~----~v~~iSA~~g~Gi~~L~~~i~~~L~~~p~  176 (185)
T d1lnza2         143 LTDDY----PVFPISAVTREGLRELLFEVANQLENTPE  176 (185)
T ss_dssp             CCSCC----CBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred             hccCC----cEEEEECCCCCCHHHHHHHHHHhhhhCCC
Confidence            33221    23456788899999999999999977544

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.82  E-value=5.8e-20  Score=138.53  Aligned_cols=139  Identities=17%  Similarity=0.247  Sum_probs=100.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccc---------------cCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKS---------------KAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD   81 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (225)
                      +++++|+++|+.++|||||+++|+.......               .....+.|.......+++ ++..++|+||||+.+
T Consensus         1 k~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~-~~~~i~iiDtPGh~d   79 (204)
T d2c78a3           1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHAD   79 (204)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSGG
T ss_pred             CCCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEe-CCeEEEEEeCCCchh
Confidence            4678999999999999999999974311000               000126777888888888 899999999999986


Q ss_pred             CCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHh
Q 036158           82 SSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL  161 (225)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~  161 (225)
                      +.       ..+.    .....+|++|+|+|+.+++...+.+.+..+... +   .++++|++||+|.... ++.+++..
T Consensus        80 f~-------~~~~----~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~-g---i~~iiv~iNK~D~~~~-~~~~~~~~  143 (204)
T d2c78a3          80 YI-------KNMI----TGAAQMDGAILVVSAADGPMPQTREHILLARQV-G---VPYIVVFMNKVDMVDD-PELLDLVE  143 (204)
T ss_dssp             GH-------HHHH----HHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT-T---CCCEEEEEECGGGCCC-HHHHHHHH
T ss_pred             hH-------HHHH----HHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc-C---CCeEEEEEEecccCCC-HHHHHHHH
Confidence            52       2232    334467999999999889999888888888774 2   1457888999998653 23455555


Q ss_pred             hhcCCchHHHHHHHcC
Q 036158          162 GRECPKPLKEILQLCD  177 (225)
Q Consensus       162 ~~~~~~~~~~~~~~~~  177 (225)
                      .+     ++..+...+
T Consensus       144 ~~-----i~~~l~~~~  154 (204)
T d2c78a3         144 ME-----VRDLLNQYE  154 (204)
T ss_dssp             HH-----HHHHHHHTT
T ss_pred             HH-----HHHHHHhcC
Confidence            55     666666544

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.81  E-value=1.6e-19  Score=138.41  Aligned_cols=172  Identities=14%  Similarity=0.153  Sum_probs=106.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEE------------------EEEeeCCceEEEEeCCCCCC
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQ------------------RTMLKDGQVVNVIDTPGLFD   81 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~------------------~~~~~~~~~~~liDtPG~~~   81 (225)
                      +.|+|+|++++|||||+|+|++.......  ..+.|......                  .+.+ .+..++++||||+.+
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iDtPGh~~   82 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGSAVASRE--AGGITQHIGATEIPMDVIEGICGDFLKKFSIRE-TLPGLFFIDTPGHEA   82 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGG-TCCEEEEECCCTTSC
T ss_pred             CEEEEEeCCCccHHHHHHHHHhhcchhee--cCceeeeccccccccccccccccccccceeecc-cccccccccccceec
Confidence            55999999999999999999976543221  11111111111                  1223 566899999999887


Q ss_pred             CCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcc----cH
Q 036158           82 SSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDE----TL  157 (225)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~----~~  157 (225)
                      +.....           .....+|++|+|+|+..++...+.+.+..+.+.     ..|+++++||+|.......    .+
T Consensus        83 f~~~~~-----------~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-----~~p~iivlNK~D~~~~~~~~~~~~~  146 (227)
T d1g7sa4          83 FTTLRK-----------RGGALADLAILIVDINEGFKPQTQEALNILRMY-----RTPFVVAANKIDRIHGWRVHEGRPF  146 (227)
T ss_dssp             CTTSBC-----------SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSTTCCCCTTCCH
T ss_pred             ccccch-----------hcccccceEEEEEecccCcccchhHHHHHhhcC-----CCeEEEEEECccCCCchhhhhhHHH
Confidence            642221           345678999999999888999999999888774     3799999999998754411    11


Q ss_pred             HHHhhh-----------cCCchHHHHHHHcCCcEEEe---------eCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          158 EDYLGR-----------ECPKPLKEILQLCDNRCVLF---------DNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       158 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ......           ........+.+. +.....+         -+..+.|+.++.++++|++.|..+.++.
T Consensus       147 ~~~~~~~~~~v~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~  219 (227)
T d1g7sa4         147 METFSKQDIQVQQKLDTKVYELVGKLHEE-GFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY  219 (227)
T ss_dssp             HHHHTTSCHHHHHHHHHHHHHHHHHHHHT-TCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHhhhcchHHHHHHHHHHHHHHHHHHHHh-hhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence            110000           000001111111 1111111         1123457888899999999999887664

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.81  E-value=2.2e-20  Score=135.43  Aligned_cols=156  Identities=21%  Similarity=0.286  Sum_probs=103.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCc--HHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADS--EFVSKEIVKCI   97 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~--~~~~~~~~~~~   97 (225)
                      ++|+++|.+|+|||||+|+|+|...... ...++.|.......+.. .+..+.++||||+.......  ..........+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIV-TDIPGTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCC-CCSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceee-eccccccccceeEEEEe-CCeeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            5899999999999999999998775433 23445555555555666 78899999999986433211  11112222222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                          ..+|++++|+|++++....+......+.       ..++++++||.|.....  ..++            +....+
T Consensus        79 ----~~ad~ii~v~d~~~~~~~~~~~~~~~~~-------~~~~i~~~~k~d~~~~~--~~~~------------~~~~~~  133 (160)
T d1xzpa2          79 ----EKADIVLFVLDASSPLDEEDRKILERIK-------NKRYLVVINKVDVVEKI--NEEE------------IKNKLG  133 (160)
T ss_dssp             ----HHCSEEEEEEETTSCCCHHHHHHHHHHT-------TSSEEEEEEECSSCCCC--CHHH------------HHHHHT
T ss_pred             ----HhCCEEEEEEeCCCCcchhhhhhhhhcc-------cccceeeeeeccccchh--hhHH------------HHHHhC
Confidence                3459999999998777766655444332       27899999999987653  2222            222222


Q ss_pred             CcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158          178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNS  206 (225)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~  206 (225)
                      ..    .+....||+++.++++|++.|.+
T Consensus       134 ~~----~~~~~vSA~~g~gi~~L~~~I~k  158 (160)
T d1xzpa2         134 TD----RHMVKISALKGEGLEKLEESIYR  158 (160)
T ss_dssp             CS----TTEEEEEGGGTCCHHHHHHHHHH
T ss_pred             CC----CcEEEEECCCCCCHHHHHHHHHh
Confidence            21    11234577888999999998854

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.80  E-value=1.6e-18  Score=126.17  Aligned_cols=161  Identities=14%  Similarity=0.083  Sum_probs=104.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      .++|+++|.+|+|||||+|+|.+....     ...+|.......+.. .+..+.+|||||..           .+.....
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~-----~~~~t~~~~~~~~~~-~~~~~~~~D~~G~~-----------~~~~~~~   64 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEH-RGFKLNIWDVGGQK-----------SLRSYWR   64 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCS-----SCCCCSSEEEEEEEE-TTEEEEEEEECCSH-----------HHHTTGG
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCC-----cccceEeeeeeeccc-cccceeeeecCcch-----------hhhhHHH
Confidence            579999999999999999999987642     233455555556666 78899999999943           3444556


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      .....++++++|+|..+..+..+  ....+......  ....|+++|.||+|+....  ..++....     +  .+...
T Consensus        65 ~~~~~~~~~i~v~d~~d~~~~~~--~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~-----~--~~~~~  133 (165)
T d1ksha_          65 NYFESTDGLIWVVDSADRQRMQD--CQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEA-----L--ELDSI  133 (165)
T ss_dssp             GGCTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHH-----T--TGGGC
T ss_pred             hhhhhhhcceeeeecccchhHHH--HHHhhhhhhhhcccCCCceEEEEecccccccc--CHHHHHHH-----H--Hhhhh
Confidence            67788999999999874433322  22222222211  1347999999999976543  33332222     0  01122


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      ..+.+.+   ...||.++.++++++++|.+.+.+
T Consensus       134 ~~~~~~~---~~~Sa~~g~gv~e~~~~l~~~i~~  164 (165)
T d1ksha_         134 RSHHWRI---QGCSAVTGEDLLPGIDWLLDDISS  164 (165)
T ss_dssp             CSSCEEE---EECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             hcCCCEE---EEEECCCCCCHHHHHHHHHHHHHc
Confidence            2222222   245677889999999999877654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=3.2e-19  Score=130.55  Aligned_cols=161  Identities=12%  Similarity=0.071  Sum_probs=99.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .++|+|+|.+|+|||||++++.+.......  .+..+.......+.. .+  ..+.+|||||..+.           ...
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~l~~wDt~G~e~~-----------~~~   70 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADDSFTPAF--VSTVGIDFKVKTIYR-NDKRIKLQIWDTAGQERY-----------RTI   70 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSC--CCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------HHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcCCCCccc--ccccccceeeEEEEe-ecceEEEEEEECCCchhh-----------HHH
Confidence            478999999999999999999876543222  222223333333333 33  37889999995432           233


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      ...++..+|++|+|+|..+.-+... ..++..+....  ....|+++|.||+|.........++         .+++.+.
T Consensus        71 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~~v~~~~---------~~~~~~~  139 (169)
T d3raba_          71 TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS--WDNAQVLLVGNKCDMEDERVVSSER---------GRQLADH  139 (169)
T ss_dssp             HHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHC--CSCCEEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred             HHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhccc--CCcceEEEEEeecccccccccchhh---------hHHHHHH
Confidence            4457788999999999974322221 22333333322  2247888999999966543111111         3344555


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      .+.+++      ..||.++.+++++++.|.+.+.+
T Consensus       140 ~~~~~~------e~Sak~g~gv~e~f~~l~~~i~e  168 (169)
T d3raba_         140 LGFEFF------EASAKDNINVKQTFERLVDVICE  168 (169)
T ss_dssp             HTCEEE------ECBTTTTBSHHHHHHHHHHHHHT
T ss_pred             cCCEEE------EecCCCCcCHHHHHHHHHHHHhh
Confidence            565433      34566778999999999887754

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=7.3e-19  Score=145.17  Aligned_cols=176  Identities=16%  Similarity=0.090  Sum_probs=110.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCC---CCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGS---SGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ..++|+|+|.+|+|||||+|+|+|..........   ..+|.....  +..++..+++||||||++......++....+ 
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~--~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~~-  131 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHP--YKHPNIPNVVFWDLPGIGSTNFPPDTYLEKM-  131 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEE--EECSSCTTEEEEECCCGGGSSCCHHHHHHHT-
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeee--eeccCCCeEEEEeCCCcccccccHHHHHHHh-
Confidence            4689999999999999999999997643332222   223444333  3344667899999999987665555433322 


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC-------cccHHHHhhhcCCc
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN-------DETLEDYLGRECPK  167 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~-------~~~~~~~~~~~~~~  167 (225)
                           ....+|++|++.+.  +++..+.++++.+++.     .+|+++|+||+|.....       ....+..+++ ..+
T Consensus       132 -----~~~~~d~~l~~~~~--~~~~~d~~l~~~l~~~-----~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~-ir~  198 (400)
T d1tq4a_         132 -----KFYEYDFFIIISAT--RFKKNDIDIAKAISMM-----KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQD-IRL  198 (400)
T ss_dssp             -----TGGGCSEEEEEESS--CCCHHHHHHHHHHHHT-----TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHH-HHH
T ss_pred             -----hhhcceEEEEecCC--CCCHHHHHHHHHHHHc-----CCCEEEEEeCcccccchhhhcccccccHHHHHHH-HHH
Confidence                 33456888888764  6888888888888774     38999999999954111       0122223222 222


Q ss_pred             hHHHHHHHcCC---cEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158          168 PLKEILQLCDN---RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG  213 (225)
Q Consensus       168 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~  213 (225)
                      ...+.++..+.   +++.+++...    ...++++|.+.+.+.+++..+
T Consensus       199 ~~~~~l~~~~~~~~~vflvS~~~~----~~~d~~~L~~~l~~~L~~~~~  243 (400)
T d1tq4a_         199 NCVNTFRENGIAEPPIFLLSNKNV----CHYDFPVLMDKLISDLPIYKR  243 (400)
T ss_dssp             HHHHHHHHTTCSSCCEEECCTTCT----TSTTHHHHHHHHHHHSCGGGH
T ss_pred             HHHHHHHHcCCCCCCEEEecCCcc----cccCHHHHHHHHHHHhHHHHH
Confidence            23444444332   3444444322    236889999999888776543

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.3e-17  Score=122.32  Aligned_cols=168  Identities=18%  Similarity=0.170  Sum_probs=104.6

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHH
Q 036158           15 PSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKE   92 (225)
Q Consensus        15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~   92 (225)
                      ++...++|+|+|.+|+|||||++++++.... ..  ...++.......+.+ ++.  .+.+|||+|..++......    
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~-~~--~~~t~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~~~----   73 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFV-SD--YDPTIEDSYTKICSV-DGIPARLDILDTAGQEEFGAMREQ----   73 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCC-SS--CCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTTTSCCHHH----
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCC-cc--cccccccceeeEecc-CCeeeeeeccccccccccccccch----
Confidence            3456789999999999999999999876532 21  222233333344554 443  6788999998866433221    


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158           93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE  171 (225)
Q Consensus        93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~  171 (225)
                             ....+|++|+|+|.++..+... ..++..+.+.... ...|+++|.||+|+........++         ...
T Consensus        74 -------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilvgnK~Dl~~~~~~~~~~---------~~~  136 (173)
T d2fn4a1          74 -------YMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDR-DDFPVVLVGNKADLESQRQVPRSE---------ASA  136 (173)
T ss_dssp             -------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTS-SCCCEEEEEECGGGGGGCCSCHHH---------HHH
T ss_pred             -------hhccceeeeeecccccccccchhhhhhHHHHHHhcc-CCCceEEEEEeechhhccccchhh---------hhH
Confidence                   2234699999999975433222 2233333332222 246999999999975432111111         334


Q ss_pred             HHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcCC
Q 036158          172 ILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNGG  213 (225)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~~  213 (225)
                      ..+..+..++      .+||.++.+++++++.+.+.+.+...
T Consensus       137 ~~~~~~~~~~------e~Sak~g~gv~e~f~~l~~~i~k~~~  172 (173)
T d2fn4a1         137 FGASHHVAYF------EASAKLRLNVDEAFEQLVRAVRKYQE  172 (173)
T ss_dssp             HHHHTTCEEE------ECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred             HHHhcCCEEE------EEeCCCCcCHHHHHHHHHHHHHHHhc
Confidence            4444444332      34667889999999999988877653

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=6.3e-18  Score=123.45  Aligned_cols=160  Identities=19%  Similarity=0.119  Sum_probs=93.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      ++|+|+|.+|+|||||++++.+......    ..++.......+.+ ++  ..+.+|||||...+.           ...
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~----~~~~~~~~~~~i~~-~~~~~~l~i~D~~g~e~~~-----------~~~   65 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPE----AEAAGHTYDRSIVV-DGEEASLMVYDIWEQDGGR-----------WLP   65 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC-------------CEEEEEEEEE-TTEEEEEEEEECC------------------CH
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCc----CCeeeeeecceeec-cccccceeeeecccccccc-----------eec
Confidence            6899999999999999999998653211    11222222233444 44  378899999975432           222


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEEG-AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      ..++..+|++|+|+|++++.+-... .++..+..... ....|+++|.||+|+.........+         .+++.+..
T Consensus        66 ~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~~~~v~~~~---------~~~~~~~~  135 (168)
T d2gjsa1          66 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSREVSVDE---------GRACAVVF  135 (168)
T ss_dssp             HHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCGGGCCSCHHH---------HHHHHHHH
T ss_pred             ccchhhhhhhceeccccccccccccccccchhhcccc-cccceEEEeecccchhhhcchhHHH---------HHHHHHhc
Confidence            3455688999999999854333322 23333433322 2346899999999976543111111         34445555


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      +.+++      ..||+++.+++++++.|.+.+.++
T Consensus       136 ~~~~~------e~Sak~~~~v~~~f~~l~~~i~~~  164 (168)
T d2gjsa1         136 DCKFI------ETSAALHHNVQALFEGVVRQIRLR  164 (168)
T ss_dssp             TSEEE------ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCEEE------EEeCCCCcCHHHHHHHHHHHHHHH
Confidence            55433      346677899999999988766554

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.77  E-value=2.1e-18  Score=129.14  Aligned_cols=169  Identities=14%  Similarity=0.192  Sum_probs=103.6

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccc-cCCCCCceeEEEEEEEEe----------------------eCCceEE
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKS-KAGSSGVTKTCEMQRTML----------------------KDGQVVN   72 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~----------------------~~~~~~~   72 (225)
                      ..+.++|+++|+.++|||||+|+|++...... .....+.|.........+                      .....++
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            45678999999999999999999997532111 011112222211111100                      0123589


Q ss_pred             EEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccccEEEEEecCCCCC
Q 036158           73 VIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRF-SEEEGAAIHILESLFGKKISDYMIVVFTGGDELE  151 (225)
Q Consensus        73 liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~  151 (225)
                      ++||||+.           .+...+......+|++++|+++.++. ....++.+..+... +.   +++++++||+|+..
T Consensus        82 ~iDtPGh~-----------~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~-~~---~~iiv~inK~D~~d  146 (195)
T d1kk1a3          82 FIDAPGHE-----------ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQ---KNIIIAQNKIELVD  146 (195)
T ss_dssp             EEECSSHH-----------HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSC
T ss_pred             eeccchhh-----------hhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh-cC---ccceeeeecccchh
Confidence            99999964           23333444455779999999998665 44455666655553 22   56888999999765


Q ss_pred             CCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          152 DNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      ..  ........     +.+.++........   ..+.||.++.++++|++.|.+.++
T Consensus       147 ~~--~~~~~~~~-----~~~~~~~~~~~~~~---iIpiSA~~G~ni~~Ll~~I~~~iP  194 (195)
T d1kk1a3         147 KE--KALENYRQ-----IKEFIEGTVAENAP---IIPISALHGANIDVLVKAIEDFIP  194 (195)
T ss_dssp             HH--HHHHHHHH-----HHHHHTTSTTTTCC---EEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             hH--HHHHHHHH-----HHHHhccccCCCCe---EEEEECCCCCCHHHHHHHHHHHCc
Confidence            42  23232333     45566554432111   235678889999999999987653

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.5e-18  Score=125.12  Aligned_cols=162  Identities=15%  Similarity=0.136  Sum_probs=102.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .++|+|+|.+|+|||||++++.+......  ..+..+.......+.. ++.  .+.+|||||...           +...
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~--~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~-----------~~~~   70 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPG--QGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQER-----------FRSI   70 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTT--CCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCc--ccccccceEEEEEEEE-CCEEEEEEEEECCCchh-----------hHHH
Confidence            37899999999999999999997654222  2333444445555555 443  578899999542           2344


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      ...++..++++++|++..++.+... .+.+..+.+...  ...|+++|.||+|.........++         .+++.+.
T Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~~ilvgnK~D~~~~~~v~~~~---------~~~~~~~  139 (171)
T d2ew1a1          71 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS--NKVITVLVGNKIDLAERREVSQQR---------AEEFSEA  139 (171)
T ss_dssp             HGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCSSCHHH---------HHHHHHH
T ss_pred             HHHHHhccceEEEeeecccchhhhhhhhhhhhhccccc--ccccEEEEEeecccccccchhhhH---------HHHHHHh
Confidence            4567789999999999874422221 233344433322  247899999999975443112221         3444555


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHH-HHHHHHHc
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSL-VNSVIVQN  211 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~-i~~~~~~~  211 (225)
                      .+.+++      .+||+++.++++++.. +.+++.+.
T Consensus       140 ~~~~~~------~~SAktg~gV~e~f~~l~~~l~~~~  170 (171)
T d2ew1a1         140 QDMYYL------ETSAKESDNVEKLFLDLACRLISEA  170 (171)
T ss_dssp             HTCCEE------ECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             CCCEEE------EEccCCCCCHHHHHHHHHHHHHHhc
Confidence            555432      3567788999999764 44666553

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.77  E-value=5.8e-18  Score=125.17  Aligned_cols=165  Identities=16%  Similarity=0.137  Sum_probs=104.3

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           15 PSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      ...+.++|+++|.+|||||||+++|.+.......     +|.......... .+..+.+|||||.....           
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~-----~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~-----------   75 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVVTTK-----PTIGFNVETLSY-KNLKLNVWDLGGQTSIR-----------   75 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEEC-----SSTTCCEEEEEE-TTEEEEEEEEC----CC-----------
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCccc-----cccceEEEEEee-CCEEEEEEecccccccc-----------
Confidence            4566899999999999999999999877643221     233333344555 77899999999976543           


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI  172 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (225)
                      ..+..+...+|++++|+|+.++.+..+  ..+++......  ....|+++|.||+|+....  ..++..+.     +.  
T Consensus        76 ~~~~~~~~~~~~ii~v~d~~d~~s~~~--~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~--~~~~i~~~-----~~--  144 (182)
T d1moza_          76 PYWRCYYADTAAVIFVVDSTDKDRMST--ASKELHLMLQEEELQDAALLVFANKQDQPGAL--SASEVSKE-----LN--  144 (182)
T ss_dssp             TTGGGTTTTEEEEEEEEETTCTTTHHH--HHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC--CHHHHHHH-----TT--
T ss_pred             hhHHhhhccceeEEEEeeecccccchh--HHHHHHHHHHhhccCCcceEEEEEeecccccc--CHHHHHHH-----HH--
Confidence            223346778999999999975544433  33333333222  1247999999999976442  33332222     00  


Q ss_pred             HHHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          173 LQLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       173 ~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      +..... .+.+    ..+||.++.++++++++|.+.++++
T Consensus       145 ~~~~~~~~~~~----~e~SA~~g~gv~e~~~~l~~~i~~~  180 (182)
T d1moza_         145 LVELKDRSWSI----VASSAIKGEGITEGLDWLIDVIKEE  180 (182)
T ss_dssp             TTTCCSSCEEE----EEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             HHHHhhCCCEE----EEEECCCCCCHHHHHHHHHHHHHHc
Confidence            111121 2222    3567888899999999999988774

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.77  E-value=7.7e-18  Score=123.69  Aligned_cols=163  Identities=17%  Similarity=0.134  Sum_probs=102.1

Q ss_pred             CCCCCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHH
Q 036158           13 TSPSNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKE   92 (225)
Q Consensus        13 ~~~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~   92 (225)
                      .++....++|+++|.+|+|||||+|+|.+.......     .+.......+.. .+..+.++|+||....          
T Consensus        10 ~~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~-----~~~~~~~~~i~~-~~~~~~i~d~~g~~~~----------   73 (176)
T d1fzqa_          10 KSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHIT-----PTQGFNIKSVQS-QGFKLNVWDIGGQRKI----------   73 (176)
T ss_dssp             SSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-----EETTEEEEEEEE-TTEEEEEEECSSCGGG----------
T ss_pred             hCCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcce-----eeeeeeEEEecc-CCeeEeEeeccccccc----------
Confidence            455677899999999999999999999987643221     122233444555 6789999999996532          


Q ss_pred             HHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHH
Q 036158           93 IVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK  170 (225)
Q Consensus        93 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~  170 (225)
                       ...+..+...+|++++|+|+.+..+..+  ...++......  ....|+++|.||+|+....  ......+.     +.
T Consensus        74 -~~~~~~~~~~~~~ii~v~d~~d~~s~~~--~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~--~~~~~~~~-----~~  143 (176)
T d1fzqa_          74 -RPYWRSYFENTDILIYVIDSADRKRFEE--TGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEG-----LN  143 (176)
T ss_dssp             -HHHHHHHHTTCSEEEEEEETTCGGGHHH--HHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHH-----TT
T ss_pred             -hhHHHHHhhccceeEEeeccccccchhh--hhhhhhhhhhhhccCCCeEEEEEEeccccccc--cHHHHHHH-----HH
Confidence             2233345667899999999975443332  22222222221  1247999999999987653  33322211     00


Q ss_pred             HHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158          171 EILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNS  206 (225)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~  206 (225)
                        +.....+.+.+   ...||.++.++++++++|.+
T Consensus       144 --~~~~~~~~~~~---~~~SA~tg~gv~e~~~~l~~  174 (176)
T d1fzqa_         144 --LHTIRDRVWQI---QSCSALTGEGVQDGMNWVCK  174 (176)
T ss_dssp             --GGGCCSSCEEE---EECCTTTCTTHHHHHHHHHH
T ss_pred             --HHHHHhcCCEE---EEEeCCCCCCHHHHHHHHHh
Confidence              11222222222   23577788999999998865

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=1.5e-17  Score=124.29  Aligned_cols=164  Identities=15%  Similarity=0.108  Sum_probs=101.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      .++|+|+|.+|+|||||++++++...... . .+..+.......+..+ ....+.+|||||...+...           +
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~-~-~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~-----------~   72 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSDDTYTND-Y-ISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI-----------T   72 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTT-C-CCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCC-----------C
T ss_pred             EEEEEEECCCCcCHHHHHHHHhhCCCCCC-c-CCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHH-----------H
Confidence            48899999999999999999986653222 1 1222222222333331 2237889999998755322           2


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEEGA-AIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      ..+...+|++|+|+|.+++.+..... .+..+.+...  ...|+++|.||+|.........++         ........
T Consensus        73 ~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~D~~~~~~~~~~~---------~~~~~~~~  141 (194)
T d2bcgy1          73 SSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT--STVLKLLVGNKCDLKDKRVVEYDV---------AKEFADAN  141 (194)
T ss_dssp             GGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTCCSCHHH---------HHHHHHHT
T ss_pred             HHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhccc--CCceEEEEEeccccccccchhHHH---------Hhhhhhcc
Confidence            24567889999999997443333222 3334443322  347999999999976654222221         23333344


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                      +..++      ..||.++.+++++++.+.+.+.++.
T Consensus       142 ~~~~~------e~SAk~g~gi~e~f~~l~~~i~~~~  171 (194)
T d2bcgy1         142 KMPFL------ETSALDSTNVEDAFLTMARQIKESM  171 (194)
T ss_dssp             TCCEE------ECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             CcceE------EEecCcCccHHHHHHHHHHHHHHHh
Confidence            44433      3466677999999999887776653

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.76  E-value=6e-18  Score=124.10  Aligned_cols=160  Identities=13%  Similarity=0.104  Sum_probs=103.3

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      +++.++|+++|.+|+|||||++++.+.....     ...|.......... ....+.+|||||....           ..
T Consensus         9 ~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~-----~~~t~~~~~~~~~~-~~~~~~i~D~~g~~~~-----------~~   71 (173)
T d1e0sa_           9 GNKEMRILMLGLDAAGKTTILYKLKLGQSVT-----TIPTVGFNVETVTY-KNVKFNVWDVGGQDKI-----------RP   71 (173)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHTTCCCCEE-----EEEETTEEEEEEEE-TTEEEEEEEESCCGGG-----------HH
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHhcCCCCC-----ccceeeeeEEEeec-cceeeEEecCCCcchh-----------hh
Confidence            3567999999999999999999998766322     22344444455555 7789999999996533           23


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                      .+......++++++|+|.++..+..  ...+++......  ....|++++.||+|+....  ...+...+     +  -+
T Consensus        72 ~~~~~~~~~~~ii~v~D~s~~~~~~--~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~--~~~~i~~~-----~--~~  140 (173)
T d1e0sa_          72 LWRHYYTGTQGLIFVVDCADRDRID--EARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEK-----L--GL  140 (173)
T ss_dssp             HHGGGTTTCCEEEEEEETTCGGGHH--HHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC--CHHHHHHH-----T--TG
T ss_pred             HHHhhhcccceEEEEEecccchhHH--HHHHHHHHHhhhcccccceeeeeeecccccccc--cHHHHHHH-----H--HH
Confidence            4456778899999999997432222  233334333322  2347999999999976543  32222211     0  01


Q ss_pred             HHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          174 QLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       174 ~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                      +.+.. .+..    ...||.++.++++++++|.+-
T Consensus       141 ~~~~~~~~~~----~e~SA~tg~gv~e~~~~l~~~  171 (173)
T d1e0sa_         141 TRIRDRNWYV----QPSCATSGDGLYEGLTWLTSN  171 (173)
T ss_dssp             GGCCSSCEEE----EECBTTTTBTHHHHHHHHHHH
T ss_pred             HHHHhCCCEE----EEeeCCCCcCHHHHHHHHHHh
Confidence            22222 2222    355778889999999999654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=3.6e-18  Score=124.25  Aligned_cols=156  Identities=18%  Similarity=0.126  Sum_probs=96.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      ++|+++|.+|+|||||+|++++...... . .+............. .+  ..+.+|||||..+......          
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~~~~~~~-~-~~ti~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~----------   69 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCKGIFTKD-Y-KKTIGVDFLERQIQV-NDEDVRLMLWDTAGQEEFDAITK----------   69 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCCCC-S-SCCCSSSEEEEEEEE-TTEEEEEEEECCTTGGGTTCCCH----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcc-c-ccccccccceeeeee-cCceeeeeeeccCCccchhhhhh----------
Confidence            7899999999999999999996553221 1 122222222222333 33  3789999999776543222          


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                       .....+|++++|+|..++.+.+. ..+++.+.+..+   ..|+++|.||+|+........+         ..+++.+..
T Consensus        70 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~iilVgnK~Dl~~~~~v~~~---------~~~~~~~~~  136 (164)
T d1z2aa1          70 -AYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG---DIPTALVQNKIDLLDDSCIKNE---------EAEGLAKRL  136 (164)
T ss_dssp             -HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHC---SCCEEEEEECGGGGGGCSSCHH---------HHHHHHHHH
T ss_pred             -hhhccCceEEEEEeccchhhhhhcccccccccccCC---CceEEEeeccCCcccceeeeeh---------hhHHHHHHc
Confidence             23457799999999975433222 223344444332   3799999999997654311111         134455555


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                      +.+++      ..||.++.+++++++.|.+-
T Consensus       137 ~~~~~------e~Sak~g~~v~e~f~~l~~~  161 (164)
T d1z2aa1         137 KLRFY------RTSVKEDLNVSEVFKYLAEK  161 (164)
T ss_dssp             TCEEE------ECBTTTTBSSHHHHHHHHHH
T ss_pred             CCEEE------EeccCCCcCHHHHHHHHHHH
Confidence            65432      34667789999999887543

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=9.8e-18  Score=122.64  Aligned_cols=163  Identities=17%  Similarity=0.149  Sum_probs=99.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .++|+|+|.+|+|||||++++++.... ..  ..++........... ++.  .+.+|||+|...+.           ..
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~-~~--~~~T~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~-----------~~   66 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFR-ES--YIPTVEDTYRQVISC-DKSICTLQITDTTGSHQFP-----------AM   66 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCC-SS--CCCCSCEEEEEEEEE-TTEEEEEEEEECCSCSSCH-----------HH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCC-Cc--cCcceeeccccceee-ccccceecccccccccccc-----------cc
Confidence            579999999999999999999976632 21  112222222233333 444  67789999977541           11


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      ...+...+|++++|+|++++-+... ..++..+.+..+.....|+++|.||+|+........++         .+++.+.
T Consensus        67 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e---------~~~~~~~  137 (171)
T d2erxa1          67 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSE---------AEALART  137 (171)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred             ccccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHH---------HHHHHHH
Confidence            1123345699999999974422222 23444444443333457999999999975443111111         3444555


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      .+.+++      .+||+++.+++++++.|.++++++
T Consensus       138 ~~~~~~------e~Sak~~~~v~e~f~~l~~~~~~~  167 (171)
T d2erxa1         138 WKCAFM------ETSAKLNHNVKELFQELLNLEKRR  167 (171)
T ss_dssp             HTCEEE------ECBTTTTBSHHHHHHHHHHTCCSS
T ss_pred             cCCeEE------EEcCCCCcCHHHHHHHHHHHHHHh
Confidence            554432      356778899999999988766543

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.75  E-value=7.2e-18  Score=127.11  Aligned_cols=169  Identities=15%  Similarity=0.120  Sum_probs=102.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCC-C-----CceeEEEEEEEE----------------------eeCC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGS-S-----GVTKTCEMQRTM----------------------LKDG   68 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~-~-----~~t~~~~~~~~~----------------------~~~~   68 (225)
                      .++++|+++|+.++|||||+|+|++.......... .     ............                      ....
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence            66789999999999999999999974321110000 0     000000000000                      0012


Q ss_pred             ceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccccEEEEEecC
Q 036158           69 QVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRF-SEEEGAAIHILESLFGKKISDYMIVVFTGG  147 (225)
Q Consensus        69 ~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~  147 (225)
                      +.+.++||||+.++           ...+......+|++|+|+++.+.+ ...+++.+..+... +.   +|++|++||+
T Consensus        86 r~~~iiD~PGH~df-----------~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~-~i---~~iIV~vNK~  150 (205)
T d2qn6a3          86 RRISFIDAPGHEVL-----------MATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GV---KNLIIVQNKV  150 (205)
T ss_dssp             EEEEEEECSCHHHH-----------HHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT-TC---CCEEEEEECG
T ss_pred             EEEEEeccchHHHH-----------HhhhhcceeccccccccccccccccchhHHHHHHHHHHc-CC---ceeeeccccC
Confidence            36899999997533           333334556789999999998776 55556666666553 32   5889999999


Q ss_pred             CCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          148 DELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       148 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      |+....  ........     ..+.+........   ...+.||.++.++++|++.|.+.+++
T Consensus       151 Dl~~~~--~~~~~~~~-----~~~~l~~~~~~~~---p~ipiSA~~g~nI~~L~e~i~~~ip~  203 (205)
T d2qn6a3         151 DVVSKE--EALSQYRQ-----IKQFTKGTWAENV---PIIPVSALHKINIDSLIEGIEEYIKT  203 (205)
T ss_dssp             GGSCHH--HHHHHHHH-----HHHHHTTSTTTTC---CEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             CCccch--HHHHHHHH-----HHHHhccccCCCC---eEEEEeCCCCCChHHHHHHHHhhCCC
Confidence            987543  22222222     3444443332111   12356778889999999999887664

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.5e-16  Score=115.81  Aligned_cols=161  Identities=17%  Similarity=0.159  Sum_probs=100.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      +..+|+|+|.+|+|||||++++++...... . .+.... .....+.+ ++.  .+.+|||+|...+.....        
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~-~-~~t~~~-~~~~~~~~-~~~~~~l~i~d~~g~~~~~~~~~--------   70 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDS-Y-DPTIEN-TFTKLITV-NGQEYHLQLVDTAGQDEYSIFPQ--------   70 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSC-C-CSSCCE-EEEEEEEE-TTEEEEEEEEECCCCCTTCCCCG--------
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcc-c-Ccceec-ccceEEec-CcEEEEeeecccccccccccccc--------
Confidence            458999999999999999999986553211 1 111111 11223344 443  678899999876543222        


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                         .....+|++|+|+|.+++-+-.. ..++..+.+..+. ...|+++|.||+|+.....-..++         .+++.+
T Consensus        71 ---~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~~~r~v~~~~---------~~~~a~  137 (167)
T d1xtqa1          71 ---TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHMERVISYEE---------GKALAE  137 (167)
T ss_dssp             ---GGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCS-SCCCEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred             ---hhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccc-cccceeeeccccccccccchhHHH---------HHHHHH
Confidence               35568899999999985433222 2233344443332 246999999999976543112221         344555


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      ..+..|+      ..||+++.+++++++.|.+.+.
T Consensus       138 ~~~~~~~------e~Sak~~~~v~~~f~~li~~~~  166 (167)
T d1xtqa1         138 SWNAAFL------ESSAKENQTAVDVFRRIILEAE  166 (167)
T ss_dssp             HHTCEEE------ECCTTCHHHHHHHHHHHHHHHH
T ss_pred             HcCCEEE------EEecCCCCCHHHHHHHHHHHhc
Confidence            5554432      3577888999999988865543

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=8.3e-18  Score=122.21  Aligned_cols=158  Identities=16%  Similarity=0.129  Sum_probs=99.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      ++|+|+|.+|+|||||+|++++......  ..+..+.......... ++  ..+.+|||||.....           ...
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~-----------~~~   66 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNT--YQATIGIDFLSKTMYL-EDRTIRLQLWDTAGQERFR-----------SLI   66 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSS--CCCCCSEEEEEEEEEC-SSCEEEEEEEEECCSGGGG-----------GGH
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCc--cccceeeeccceeecc-CCCceeeeecccCCcchhc-----------cch
Confidence            4899999999999999999997664222  1223333333333333 33  378999999976431           122


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      ...+..+|++++|+|..++.+... ..++..+......  ..|+++|.||+|+.+......++         ..++.+..
T Consensus        67 ~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~--~~~iilvgnK~Dl~~~~~~~~~~---------~~~~~~~~  135 (164)
T d1yzqa1          67 PSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGS--DVIIMLVGNKTDLADKRQVSIEE---------GERKAKEL  135 (164)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT--SSEEEEEEECTTCGGGCCSCHHH---------HHHHHHHT
T ss_pred             HHHhhccceEEEeeccccccchhhhHhhHHHHHHhcCC--CceEEEEecccchhhhhhhhHHH---------HHHHHHHc
Confidence            234567899999999975433322 2334444443333  47899999999976543222222         34455555


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                      +.+++      ..||.++.+++++++.|.+.+
T Consensus       136 ~~~~~------e~SAk~g~~v~e~f~~i~~~l  161 (164)
T d1yzqa1         136 NVMFI------ETSAKAGYNVKQLFRRVAAAL  161 (164)
T ss_dssp             TCEEE------ECCTTTCTTHHHHHHHHHHHS
T ss_pred             CCEEE------EecCCCCcCHHHHHHHHHHhh
Confidence            54432      456677899999999987644

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=5.8e-17  Score=118.52  Aligned_cols=165  Identities=20%  Similarity=0.163  Sum_probs=98.8

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEI   93 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~   93 (225)
                      +.+.++|+|+|.+|+|||||++++.+.... ..  ..++........+.. ++.  .+.+|||+|..+...        .
T Consensus         2 m~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~-~~--~~~t~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~--------~   69 (171)
T d2erya1           2 MQEKYRLVVVGGGGVGKSALTIQFIQSYFV-TD--YDPTIEDSYTKQCVI-DDRAARLDILDTAGQEEFGA--------M   69 (171)
T ss_dssp             CCCEEEEEEEECTTSSHHHHHHHHHHSCCC-SS--CCTTCCEEEEEEEEE-TTEEEEEEEEECC----CCH--------H
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCC-cc--cCcccccceeeeeee-cccccccccccccccccccc--------c
Confidence            345689999999999999999999876532 21  122222333334444 343  799999999876531        1


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI  172 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (225)
                      .   ......+|++++|+|.+++.+... ..++..+.+.... ...|+++|.||+|.........++         ..+.
T Consensus        70 ~---~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilvgnK~Dl~~~~~v~~~~---------~~~~  136 (171)
T d2erya1          70 R---EQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDR-DEFPMILIGNKADLDHQRQVTQEE---------GQQL  136 (171)
T ss_dssp             H---HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCSEEEEEECTTCTTSCSSCHHH---------HHHH
T ss_pred             c---cccccccceEEEeeccccccchhhHHHHhHHHHhhccc-CCCCEEEEEeccchhhhccchHHH---------HHHH
Confidence            1   112235699999999974432222 2223233332222 247899999999975443112211         3445


Q ss_pred             HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          173 LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      .+..+.+|+      ..||+++.++++++..|.+.+.+.
T Consensus       137 ~~~~~~~~~------e~Sak~~~~i~e~f~~l~~~i~k~  169 (171)
T d2erya1         137 ARQLKVTYM------EASAKIRMNVDQAFHELVRVIRKF  169 (171)
T ss_dssp             HHHTTCEEE------ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HHHcCCEEE------EEcCCCCcCHHHHHHHHHHHHHHh
Confidence            556565443      356677899999999999888764

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.74  E-value=1.8e-17  Score=120.44  Aligned_cols=158  Identities=16%  Similarity=0.126  Sum_probs=97.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      +++|+++|++|+|||||+|+|.+......    ..+|.......+.. ++..+.+||+||...           +...+.
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~----~~~T~~~~~~~~~~-~~~~~~i~D~~G~~~-----------~~~~~~   65 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNED----MIPTVGFNMRKITK-GNVTIKLWDIGGQPR-----------FRSMWE   65 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCS----CCCCCSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTTHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCc----ccccceeeeeeeee-eeEEEEEeecccccc-----------cccccc
Confidence            58999999999999999999987664221    22344445555666 788999999999431           222223


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      .....+|++++|+|+.+..+-.  ....++......  ....|+++|.||.|.....  ...+..+. ..      ...+
T Consensus        66 ~~~~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~--~~~~i~~~-~~------~~~~  134 (164)
T d1zd9a1          66 RYCRGVSAIVYMVDAADQEKIE--ASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEK-MN------LSAI  134 (164)
T ss_dssp             HHHTTCSEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHH-TT------GGGC
T ss_pred             ccccccchhhcccccccccccc--hhhhhhhhhhhhhcccCCcEEEEEeccccchhh--hHHHHHHH-HH------HHHH
Confidence            3456789999999987443222  222233332222  1247999999999976543  33333222 00      0111


Q ss_pred             CC-cEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          177 DN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       177 ~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                      .. .+..+    ..|+.++.++++++++|.+.
T Consensus       135 ~~~~~~~~----e~Sa~~g~gv~e~~~~l~~~  162 (164)
T d1zd9a1         135 QDREICCY----SISCKEKDNIDITLQWLIQH  162 (164)
T ss_dssp             CSSCEEEE----ECCTTTCTTHHHHHHHHHHT
T ss_pred             HhCCCEEE----EEeCcCCcCHHHHHHHHHHc
Confidence            11 22222    34566779999999988663

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=5.1e-17  Score=119.94  Aligned_cols=175  Identities=13%  Similarity=0.174  Sum_probs=101.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ....++|+++|.+|+|||||+|+|++.+........ +.+.......... .+......++++.................
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKT-PGRTQLINLFEVA-DGKRLVDLPGYGYAEVPEEMKRKWQRALG   90 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEEEEEEE-TTEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHhCCCceEeeccc-ccceeeccceecc-cccceeeeecccccchhhhhhhhhhhhhh
Confidence            456799999999999999999999998754333222 2222222222222 45555555555544333333333333333


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      ........++.++.+.+............+..+...     ..++++++||+|+....  ........     +++.+..
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~k~D~~~~~--~~~~~~~~-----~~~~l~~  158 (188)
T d1puia_          91 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDS-----NIAVLVLLTKADKLASG--ARKAQLNM-----VREAVLA  158 (188)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCHH--HHHHHHHH-----HHHHHGG
T ss_pred             hhhhhhhheeEEEEeecccccchhHHHHHHHHhhhc-----cccccchhhhhhccCHH--HHHHHHHH-----HHHHHHh
Confidence            333334456777777787766666666666666553     37889999999987653  44444444     5566655


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                      ......    ..+.||+++.|+++|++.|.+++
T Consensus       159 ~~~~~~----~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         159 FNGDVQ----VETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             GCSCEE----EEECBTTTTBSHHHHHHHHHHHH
T ss_pred             hCCCCc----EEEEeCCCCCCHHHHHHHHHHHh
Confidence            554322    23457788999999999998875

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=1.2e-17  Score=122.62  Aligned_cols=167  Identities=14%  Similarity=0.069  Sum_probs=93.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      .++|+++|.+|+|||||+|++++...........+.+.........-.....+.++||||....           .....
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~-----------~~~~~   70 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERF-----------QSLGV   70 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC---------------------
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhh-----------hhHHH
Confidence            4799999999999999999998766432211111222211111111112236889999996533           22334


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhccc--ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~--~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      .....++++++|+|.+++.+-.. ..++..+.+.....  ...|+++|.||+|+.........+        ..+++.+.
T Consensus        71 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~--------~~~~~~~~  142 (175)
T d1ky3a_          71 AFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEK--------SAQELAKS  142 (175)
T ss_dssp             CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHH--------HHHHHHHH
T ss_pred             HHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHH--------HHHHHHHH
Confidence            56778999999999975433222 23444444433221  246999999999975432111111        13445555


Q ss_pred             cCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          176 CDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       176 ~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      .+. +++      .+||.++.+++++++.|.+.+-+
T Consensus       143 ~~~~~~~------e~SA~~g~gv~e~f~~l~~~~l~  172 (175)
T d1ky3a_         143 LGDIPLF------LTSAKNAINVDTAFEEIARSALQ  172 (175)
T ss_dssp             TTSCCEE------EEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cCCCeEE------EEeCCCCcCHHHHHHHHHHHHHh
Confidence            542 332      35667789999999888765443

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=7e-17  Score=117.61  Aligned_cols=158  Identities=15%  Similarity=0.166  Sum_probs=95.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      +.++|+|+|.+|+|||||++++++......   ...+........... ++  ..+.+||++|.....           .
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~---~~~t~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~-----------~   66 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEK---YDPTIEDFYRKEIEV-DSSPSVLEILDTAGTEQFA-----------S   66 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSC---CCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCCH-----------H
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCc---cCCceeeeeeeeeec-CcceEeeccccCCCccccc-----------c
Confidence            568999999999999999999997653222   111222222223333 33  378889999976431           1


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc--ccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFG--KKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                      ........+|++++|+|.+++.+-..  ...+......  .....|+++|.||+|+........++         .+...
T Consensus        67 ~~~~~~~~a~~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~---------~~~~~  135 (167)
T d1kaoa_          67 MRDLYIKNGQGFILVYSLVNQQSFQD--IKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSE---------GRALA  135 (167)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHH--HHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHH---------HHHHH
T ss_pred             chHHHhhcccceeeeeeecchhhhhh--hhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHH---------HHHHH
Confidence            11123345699999999985433222  2333333221  12346899999999976543222111         23444


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                      +..+.+++      ..||+++.+++++++.|.+.
T Consensus       136 ~~~~~~~~------e~Sak~g~~i~e~f~~i~~~  163 (167)
T d1kaoa_         136 EEWGCPFM------ETSAKSKTMVDELFAEIVRQ  163 (167)
T ss_dssp             HHHTSCEE------EECTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCeEE------EECCCCCcCHHHHHHHHHHH
Confidence            44454432      45677889999999887654

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=7e-18  Score=123.47  Aligned_cols=157  Identities=16%  Similarity=0.046  Sum_probs=94.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEE--EEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEM--QRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      .++|+++|.+|+|||||++++++......    ...|.....  ..+... ....+.+|||||...           ...
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~----~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~-----------~~~   67 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK-----------FGG   67 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CC----EEEETTEEEEEEEECBTTCCEEEEEEECTTHHH-----------HSS
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcc----cccceeccccccccccccccccccccccccccc-----------cce
Confidence            47899999999999999999987663211    122322222  223221 123799999999432           223


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      ....+...+|++++|+|++++.+-+. ..++..+.+..   ...|+++|.||+|+....  ..+    +     ......
T Consensus        68 ~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~~~--~~~----~-----~~~~~~  133 (170)
T d1i2ma_          68 LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKDRK--VKA----K-----SIVFHR  133 (170)
T ss_dssp             CGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHH---CSCCEEEEEECCCCSCSC--CTT----T-----SHHHHS
T ss_pred             ecchhcccccchhhccccccccccchhHHHHHHHhhcc---CCCceeeecchhhhhhhh--hhh----H-----HHHHHH
Confidence            34456778999999999975533322 22333333332   248999999999976543  111    1     223333


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      ..+.++      ...||+++.+++++++.|.+.+..
T Consensus       134 ~~~~~~------~e~Sak~~~~v~e~f~~l~~~l~~  163 (170)
T d1i2ma_         134 KKNLQY------YDISAKSNYNFEKPFLWLARKLIG  163 (170)
T ss_dssp             SCSSEE------EEEBTTTTBTTTHHHHHHHHHHHT
T ss_pred             HcCCEE------EEEeCCCCCCHHHHHHHHHHHHcc
Confidence            334333      235667789999999888876544

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.5e-17  Score=121.06  Aligned_cols=164  Identities=18%  Similarity=0.155  Sum_probs=98.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      +.++|+|+|.+|||||||+|++++...... . .+..................+.+||+||.....           ...
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-----------~~~   68 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDE-Y-DPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-----------AMR   68 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCS-C-CCCSEEEEEEEEEETTEEEEEEEEEECCCGGGH-----------HHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCc-c-CCccceeeccceeeeceeeeeeeeeccCccccc-----------cch
Confidence            458999999999999999999997653221 1 112222222211111122378999999976431           111


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      ......++++++|+|.+++.+-+. ..++..+.+..+. ...|+++|.||+|+.... ...++         .+++.+..
T Consensus        69 ~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~-~~~~~---------~~~~~~~~  137 (166)
T d1ctqa_          69 DQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKCDLAART-VESRQ---------AQDLARSY  137 (166)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTC-SSCCEEEEEECTTCSCCC-SCHHH---------HHHHHHHH
T ss_pred             hhhhhcccccceeecccccccHHHHHHHHHHHHHhcCC-CCCeEEEEeccccccccc-ccHHH---------HHHHHHHh
Confidence            123345699999999975433222 2334444443322 247999999999975432 11111         33444554


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      +.+++      ..||.++.++++++..|.+.+++|
T Consensus       138 ~~~~~------e~Sak~g~gi~e~f~~i~~~i~~~  166 (166)
T d1ctqa_         138 GIPYI------ETSAKTRQGVEDAFYTLVREIRQH  166 (166)
T ss_dssp             TCCEE------ECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             CCeEE------EEcCCCCcCHHHHHHHHHHHHHhC
Confidence            54432      446677899999999998777654

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.8e-17  Score=120.73  Aligned_cols=158  Identities=16%  Similarity=0.164  Sum_probs=97.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .++|+|+|.+|+|||||++++++......  ..+..+.......... ++.  .+.+|||||.....           ..
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~-----------~~   69 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFMAD--CPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFR-----------AV   69 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSS--CTTSCCCCEEEEEEEE-TTEEEEEEEEECTTGGGTC-----------HH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCc--ccccccccceeEEEEE-CCEEEEEEEeccCCchhHH-----------HH
Confidence            37899999999999999999997664322  1223333344444444 444  78999999965442           11


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      .......+|++++|++.++.-+-.. ..++..+.....  ...|++++.||+|+........++         ...+.+.
T Consensus        70 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilvgnK~Dl~~~~~~~~~~---------~~~~~~~  138 (166)
T d1z0fa1          70 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIILIGNKADLEAQRDVTYEE---------AKQFAEE  138 (166)
T ss_dssp             HHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred             HHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhcc--ccceEEEEcccccchhhcccHHHH---------HHHHHHH
Confidence            1123446799999999974422221 233444444322  247899999999975443112111         3445555


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                      .+.+++      ..||+++.+++++++.|.+.
T Consensus       139 ~~~~~~------e~Saktg~~v~e~f~~i~~~  164 (166)
T d1z0fa1         139 NGLLFL------EASAKTGENVEDAFLEAAKK  164 (166)
T ss_dssp             TTCEEE------ECCTTTCTTHHHHHHHHHHH
T ss_pred             cCCEEE------EEeCCCCCCHHHHHHHHHHH
Confidence            554432      35667779999998887654

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=1.9e-17  Score=121.44  Aligned_cols=162  Identities=15%  Similarity=0.121  Sum_probs=82.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .++|+++|.+|+|||||+++|++......  ..+..+.......+.. ++.  .+.+|||||...+           ...
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~e~~-----------~~~   71 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSEDAFNST--FISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERF-----------RTI   71 (173)
T ss_dssp             EEEEEEECCCCC----------------C--HHHHHCEEEEEEEEEE-TTEEEEEEEEEC--------------------
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCc--cCccccceEEEEEEEE-CCEEEEEEEEECCCchhh-----------HHH
Confidence            47899999999999999999997653211  1223344555555665 443  6778999996543           223


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      ...+...+|++|+|+|+.++.+... ...+..+.....  ...|+++|.||.|.........++         .......
T Consensus        72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~~k~D~~~~~~~~~~~---------~~~~~~~  140 (173)
T d2fu5c1          72 TTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS--ADVEKMILGNKCDVNDKRQVSKER---------GEKLALD  140 (173)
T ss_dssp             CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEEC--CCSCCCSCHHH---------HHHHHHH
T ss_pred             HHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhcc--CCceEEEEEecccchhhcccHHHH---------HHHHHHh
Confidence            3456778999999999975443332 223334433322  347899999999977654222222         2333444


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      .+.+++      ..|+..+.+++++++.|.+.+.++
T Consensus       141 ~~~~~~------e~Sa~~g~gv~e~f~~l~~~i~~k  170 (173)
T d2fu5c1         141 YGIKFM------ETSAKANINVENAFFTLARDIKAK  170 (173)
T ss_dssp             HTCEEE------ECCC---CCHHHHHHHHHHHHHHH
T ss_pred             cCCEEE------EEeCCCCCCHHHHHHHHHHHHHHh
Confidence            454443      345567799999998888777654

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5e-17  Score=118.43  Aligned_cols=160  Identities=11%  Similarity=0.096  Sum_probs=96.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKD-GQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      .++|+|+|.+|+|||||++++.+...... . .+..............+ ...+.+|||+|..+.           ....
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~-~-~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~-----------~~~~   69 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCENKFNDK-H-ITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF-----------HALG   69 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCCSS-C-CCCCSCEEEEEEEESSSCEEEEEEEECCCC------------------
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcc-c-ccccccchheeeeccCCccceeeeeccCCccee-----------cccc
Confidence            37899999999999999999987654222 1 22222223333333311 247899999997643           2233


Q ss_pred             hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           98 GMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      ..+...+|++++|+|.+++-+-.. ...++.+.....  ...|+++|.||+|+.....-..++         .+++.+..
T Consensus        70 ~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~--~~~~~ilvgnK~Dl~~~~~v~~~e---------~~~~a~~~  138 (167)
T d1z08a1          70 PIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG--NEICLCIVGNKIDLEKERHVSIQE---------AESYAESV  138 (167)
T ss_dssp             CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHG--GGSEEEEEEECGGGGGGCCSCHHH---------HHHHHHHT
T ss_pred             hhhccCCceeEEEEeCCchhHHHhhhhhhhhcccccc--cccceeeeccccccccccccchHH---------HHHHHHHc
Confidence            456788999999999975433222 223333333322  347888899999976543212221         34455555


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                      +.+++      ..||+++.+++++++.|.+.+
T Consensus       139 ~~~~~------e~Sak~~~~v~e~F~~l~~~i  164 (167)
T d1z08a1         139 GAKHY------HTSAKQNKGIEELFLDLCKRM  164 (167)
T ss_dssp             TCEEE------EEBTTTTBSHHHHHHHHHHHH
T ss_pred             CCeEE------EEecCCCcCHHHHHHHHHHHH
Confidence            65442      346667799999998887654

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.3e-17  Score=121.40  Aligned_cols=162  Identities=15%  Similarity=0.099  Sum_probs=101.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      +.++|+++|..|+|||||+|+|.+......  ..+..+.......+.. ++.  .+.+|||||..+....          
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~----------   72 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFDPE--LAATIGVDFKVKTISV-DGNKAKLAIWDTAGQERFRTL----------   72 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTT--CCCCCSEEEEEEEEEE-TTEEEEEEEEEECSSGGGCCS----------
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCc--cccceeecceeEEEEE-eccccEEEEEECCCchhhHHH----------
Confidence            457899999999999999999997664222  2223333333334444 333  7999999997654321          


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc--ccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFG--KKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL  173 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~  173 (225)
                       .......+|++++|+++.++.+  ......++.++..  .....+++++.||.|..+.. ...+         ...++.
T Consensus        73 -~~~~~~~~~~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~-v~~~---------~~~~~~  139 (177)
T d1x3sa1          73 -TPSYYRGAQGVILVYDVTRRDT--FVKLDNWLNELETYCTRNDIVNMLVGNKIDKENRE-VDRN---------EGLKFA  139 (177)
T ss_dssp             -HHHHHTTCCEEEEEEETTCHHH--HHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-SCHH---------HHHHHH
T ss_pred             -HHHHHhcCCEEEEEEECCCccc--cccchhhhhhhcccccccceeeEEEeecccccccc-ccHH---------HHHHHH
Confidence             1123457799999999874322  2233344444432  23457889999999976542 1111         134455


Q ss_pred             HHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          174 QLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      +..+..++      ..||.++.+++++++.+.+.+.++
T Consensus       140 ~~~~~~~~------e~Sa~tg~gv~e~f~~l~~~l~~~  171 (177)
T d1x3sa1         140 RKHSMLFI------EASAKTCDGVQCAFEELVEKIIQT  171 (177)
T ss_dssp             HHTTCEEE------ECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             HHCCCEEE------EEeCCCCCCHHHHHHHHHHHHccC
Confidence            55564432      345667799999999887766654

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.73  E-value=5.8e-17  Score=118.25  Aligned_cols=162  Identities=18%  Similarity=0.164  Sum_probs=94.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      +..+|+|+|.+|+|||||+|+++.... ....  .++........+.. ++.  .+.+|||||..+.    ..+.     
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f-~~~~--~~T~~~~~~~~~~~-~~~~~~l~i~d~~g~~~~----~~~~-----   69 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDY--EPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY----AAIR-----   69 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCC-CSCC--CTTCCEEEEEEEEE-TTEEEEEEEEECCC---C----HHHH-----
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCC-Cccc--CCcccccccccccc-ccccccccccccccccch----hhhh-----
Confidence            457999999999999999999986553 2211  11111222223333 443  7889999997644    1111     


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                        ......+|++++|+|..++.+... ..+++.+.+... ....|+++|.||+|+.....-..++         .+++.+
T Consensus        70 --~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiivgnK~Dl~~~~~v~~~~---------~~~~~~  137 (168)
T d1u8za_          70 --DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEE---------AKNRAD  137 (168)
T ss_dssp             --HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred             --hhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhC-CCCCcEEEEeccccccccccccHHH---------HHHHHH
Confidence              122335699999999974433222 123333333222 2347899999999975432112221         344555


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      ..+.+++      ..||+++.+++++++.|.+-+.+
T Consensus       138 ~~~~~~~------e~Sak~g~gv~e~f~~l~~~i~~  167 (168)
T d1u8za_         138 QWNVNYV------ETSAKTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             HHTCEEE------ECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HcCCeEE------EEcCCCCcCHHHHHHHHHHHHHC
Confidence            5555432      34667789999999887665543

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.7e-17  Score=120.06  Aligned_cols=158  Identities=14%  Similarity=0.141  Sum_probs=95.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .++|+|+|.+|+|||||++++++.......  .+..+.......+.. ++.  .+.++||||..++.....         
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~e~~~~~~~---------   71 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRITS---------   71 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCCCH---------
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcc--cccccceeeeEEEEE-CCEEEEEEecccCCcHHHHHHHH---------
Confidence            378999999999999999999876643222  223333333344444 443  788999999765433222         


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                        .....+|++|+|+|.+++-+-.. .+++..+.+....  ..|+++|.||+|+........+.         .....+.
T Consensus        72 --~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~--~~piilvgnK~Dl~~~~~~~~~~---------~~~~~~~  138 (175)
T d2f9la1          72 --AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDLRHLRAVPTDE---------ARAFAEK  138 (175)
T ss_dssp             --HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred             --HHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCC--CCcEEEEEeeecccccccchHHH---------HHHhhcc
Confidence              23457799999999974422222 3344445544333  36999999999976432111111         2333444


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                      .+..++      ..|+.++.+++++++.+.+.
T Consensus       139 ~~~~~~------e~Sa~~g~~i~e~f~~l~~~  164 (175)
T d2f9la1         139 NNLSFI------ETSALDSTNVEEAFKNILTE  164 (175)
T ss_dssp             TTCEEE------ECCTTTCTTHHHHHHHHHHH
T ss_pred             cCceEE------EEecCCCcCHHHHHHHHHHH
Confidence            444443      34556678898887665543

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=1.5e-17  Score=121.29  Aligned_cols=160  Identities=16%  Similarity=0.112  Sum_probs=96.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      +.++|+|+|.+|+|||||++++........ . .+............. ++  ..+.+|||+|.....           .
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~-~-~~t~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~-----------~   68 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPN-I-NPTIGASFMTKTVQY-QNELHKFLIWDTAGLERFR-----------A   68 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTT-C-CCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGG-----------G
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcc-c-ccccccccccccccc-cccccceeeeecCCchhhh-----------H
Confidence            568999999999999999999997664222 1 111122222222222 22  257799999976432           1


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      ....+...+|++|+|+|++++-+-.. ..++..+.+...  ...|+++|.||+|+........++         .+++.+
T Consensus        69 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilvgnK~Dl~~~~~v~~~~---------~~~~~~  137 (167)
T d1z0ja1          69 LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP--PSIVVAIAGNKCDLTDVREVMERD---------AKDYAD  137 (167)
T ss_dssp             GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTSEEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred             HHHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhccC--CcceEEEecccchhccccchhHHH---------HHHHHH
Confidence            12234567899999999974422222 122233333322  347999999999976433111111         344555


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                      ..+..+      ..+||+++.++++++..|.+.+
T Consensus       138 ~~~~~~------~e~SAk~~~nV~e~f~~l~~~i  165 (167)
T d1z0ja1         138 SIHAIF------VETSAKNAININELFIEISRRI  165 (167)
T ss_dssp             HTTCEE------EECBTTTTBSHHHHHHHHHHHC
T ss_pred             HcCCEE------EEEecCCCCCHHHHHHHHHHhC
Confidence            555433      2456777899999999887654

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.73  E-value=3.2e-17  Score=124.64  Aligned_cols=143  Identities=13%  Similarity=0.135  Sum_probs=98.3

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhCCcccc-------------------------------ccCCCCCceeEEEEEEE
Q 036158           15 PSNGERNLVLVGRTGNGKSATANSILGKRAFK-------------------------------SKAGSSGVTKTCEMQRT   63 (225)
Q Consensus        15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~-------------------------------~~~~~~~~t~~~~~~~~   63 (225)
                      ..++.+||+++|+.++|||||+++|+......                               ......+.|.......+
T Consensus         5 ~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~   84 (222)
T d1zunb3           5 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF   84 (222)
T ss_dssp             TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred             ccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEE
Confidence            34678999999999999999999996322100                               00112234555555556


Q ss_pred             EeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEE
Q 036158           64 MLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVV  143 (225)
Q Consensus        64 ~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv  143 (225)
                      .+ .++.+.++||||+.++       ...+.+    ....+|++++|+|+.++....+.+.+..+... +-   ++++++
T Consensus        85 ~~-~~~~~~iiD~PGH~df-------v~~~~~----g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~-gv---~~iiv~  148 (222)
T d1zunb3          85 ST-AKRKFIIADTPGHEQY-------TRNMAT----GASTCDLAIILVDARYGVQTQTRRHSYIASLL-GI---KHIVVA  148 (222)
T ss_dssp             EC-SSEEEEEEECCCSGGG-------HHHHHH----HHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT-TC---CEEEEE
T ss_pred             ec-cceEEEEEeccchhhh-------hhhhcc----ccccCceEEEEeccccCcccchHHHHHHHHHc-CC---CEEEEE
Confidence            66 7889999999999866       222322    33466999999999988988888877766653 32   578999


Q ss_pred             EecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158          144 FTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN  178 (225)
Q Consensus       144 ~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (225)
                      +||+|.....+........+     +..+++..+.
T Consensus       149 vNK~D~~~~~~~~~~~~~~~-----l~~~~~~~~~  178 (222)
T d1zunb3         149 INKMDLNGFDERVFESIKAD-----YLKFAEGIAF  178 (222)
T ss_dssp             EECTTTTTSCHHHHHHHHHH-----HHHHHHTTTC
T ss_pred             EEccccccccceehhhhHHH-----HhhhhHhhcc
Confidence            99999887654445555445     6667776654

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.4e-17  Score=120.07  Aligned_cols=160  Identities=15%  Similarity=0.122  Sum_probs=95.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .++|+|+|.+|+|||||+|++.+...... . .+..........+.. ++  ..+.+|||||...+           ...
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~-~-~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~-----------~~~   70 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDD-S-NHTIGVEFGSKIINV-GGKYVKLQIWDTAGQERF-----------RSV   70 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTT-C-CCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------HHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcc-c-ccccccceeeEEEEe-cCcceeEEEEECCCchhh-----------hhh
Confidence            37899999999999999999987653222 1 222222222222222 22  36889999996532           233


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      +......+|++++|+|.+++-+... ...+..+.....  ...|+++|.||+|.........+ .        ...+...
T Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piivv~nK~D~~~~~~~~~~-~--------~~~~~~~  139 (174)
T d2bmea1          71 TRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS--QNIVIILCGNKKDLDADREVTFL-E--------ASRFAQE  139 (174)
T ss_dssp             HHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHH-H--------HHHHHHH
T ss_pred             HHHHhhhCCEEEEEEecccchhHHHHhhhhcccccccC--CceEEEEEEecccccchhchhhh-H--------HHHHHHh
Confidence            4467788999999999974322211 223333333322  24799999999996543211111 1        2334444


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      .+.+++      ..||.++.++++++..+.+.+.
T Consensus       140 ~~~~~~------e~Sak~~~gi~e~f~~l~~~i~  167 (174)
T d2bmea1         140 NELMFL------ETSALTGENVEEAFVQCARKIL  167 (174)
T ss_dssp             TTCEEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CCCEEE------EeeCCCCcCHHHHHHHHHHHHH
Confidence            444332      3456677999999877765443

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.4e-17  Score=120.01  Aligned_cols=160  Identities=14%  Similarity=0.083  Sum_probs=96.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKD-GQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      ++|+|+|.+|+|||||++++++...... . .+..+............ ...+.++|++|.........           
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~-----------   70 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKRFQPV-H-DLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITR-----------   70 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCH-----------
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCC-c-ccceeeccceeeeeeeeeEEEEEeecccCccchhhHHH-----------
Confidence            6899999999999999999987664322 1 22222223233333312 24789999999875532222           


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      .....+|++++|+|.+++.+-.. ..++..+.+....  ..|+++|.||+|.........++         .....+..+
T Consensus        71 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~--~~piilv~nK~D~~~~~~~~~~~---------~~~~a~~~~  139 (173)
T d2a5ja1          71 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS--NMVIMLIGNKSDLESRRDVKREE---------GEAFAREHG  139 (173)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCHHH---------HHHHHHHHT
T ss_pred             HHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCC--CCeEEEEecCCchhhhhhhHHHH---------HHHHHHHcC
Confidence            23456799999999975433222 2344444444333  37899999999965433112111         344444545


Q ss_pred             CcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      .++      ...||.++.++++++..+.+.+.
T Consensus       140 ~~~------~e~Sa~tg~~V~e~f~~i~~~i~  165 (173)
T d2a5ja1         140 LIF------METSAKTACNVEEAFINTAKEIY  165 (173)
T ss_dssp             CEE------EEECTTTCTTHHHHHHHHHHHHH
T ss_pred             CEE------EEecCCCCCCHHHHHHHHHHHHH
Confidence            443      23566778999999887766443

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.6e-17  Score=121.25  Aligned_cols=163  Identities=12%  Similarity=0.106  Sum_probs=100.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeC-----------CceEEEEeCCCCCCCCCCcH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKD-----------GQVVNVIDTPGLFDSSADSE   87 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------~~~~~liDtPG~~~~~~~~~   87 (225)
                      .++|+++|.+|+|||||+++|++.......  .+..+.......+..+.           ...+.+|||||.        
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~--------   74 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKF--ITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ--------   74 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEE--EEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH--------
T ss_pred             EEEEEEECCCCcCHHHHHHHHhcCCCCCcc--CCcccceeeEEEEEEecccccccccccceEEeccccCCcc--------
Confidence            378999999999999999999976632211  11112222222222211           136899999994        


Q ss_pred             HHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcC
Q 036158           88 FVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGREC  165 (225)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~  165 (225)
                         +.+...+..+..++|++|+|+|+++..+  ......++.+....  ....|+++|.||+|+........+       
T Consensus        75 ---e~~~~~~~~~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~-------  142 (186)
T d2f7sa1          75 ---ERFRSLTTAFFRDAMGFLLMFDLTSQQS--FLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNER-------  142 (186)
T ss_dssp             ---HHHHHHHHHHHTTCCEEEEEEETTCHHH--HHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHH-------
T ss_pred             ---hhhHHHHHHHHhcCCEEEEEEecccccc--ceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHH-------
Confidence               2334444455678899999999974321  22233444433322  234678999999997544311111       


Q ss_pred             CchHHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          166 PKPLKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                        ..+++.+.++.+++      ..||.++.+++++++.|.+.+.++
T Consensus       143 --e~~~~~~~~~~~~~------e~Sak~~~~i~e~f~~l~~~i~~k  180 (186)
T d2f7sa1         143 --QARELADKYGIPYF------ETSAATGQNVEKAVETLLDLIMKR  180 (186)
T ss_dssp             --HHHHHHHHTTCCEE------EEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHcCCEEE------EEeCCCCCCHHHHHHHHHHHHHHH
Confidence              13556666665543      345566789999999998877654

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=5.6e-17  Score=118.02  Aligned_cols=161  Identities=12%  Similarity=0.144  Sum_probs=99.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      -++|+++|.+|+|||||++++++......  ..+..+.......+.. ++.  .+.+|||||...+...           
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~--~~~t~~~~~~~~~i~~-~~~~~~~~i~Dt~G~~~~~~~-----------   67 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPS--FITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTI-----------   67 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCC-----------
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCc--cCCccceeEEEEEEEE-CCEEEEEEEEECCCchhhHHH-----------
Confidence            47899999999999999999997664222  1233334444445555 443  6778999997544321           


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGA-AIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      +..+...+|++++|+|..++-+..... .+..+....  ....+++++.+|.|.....  ...+.        .+++...
T Consensus        68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~i~~~~k~d~~~~~--~~~~~--------~~~~~~~  135 (166)
T d1g16a_          68 TTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA--NDEAQLLLVGNKSDMETRV--VTADQ--------GEALAKE  135 (166)
T ss_dssp             CHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCTTCC--SCHHH--------HHHHHHH
T ss_pred             HHHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccc--cCcceeeeecchhhhhhhh--hhHHH--------HHHHHHh
Confidence            123456789999999998543322222 222333322  2346788889998876543  22221        3445555


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      .+.+++      ..|+.++.+++++++.|.+.+.++
T Consensus       136 ~~~~~~------~~Sa~~~~~v~e~f~~l~~~i~~k  165 (166)
T d1g16a_         136 LGIPFI------ESSAKNDDNVNEIFFTLAKLIQEK  165 (166)
T ss_dssp             HTCCEE------ECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             cCCeEE------EECCCCCCCHHHHHHHHHHHHHhc
Confidence            565554      345567799999999998877653

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.9e-17  Score=121.05  Aligned_cols=161  Identities=16%  Similarity=0.147  Sum_probs=97.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .++|+++|.+|+|||||+++|+....... . .+..+.......... .+  ..+.+|||||.....           ..
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~-~-~~t~~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~-----------~~   71 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVKGQFHEF-Q-ESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQERYH-----------SL   71 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTT-C-CCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGG-----------GG
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcc-c-ccccccccccceeec-cceEEEEEeccCCCchhhh-----------hh
Confidence            57899999999999999999996653222 1 222222222223333 22  378999999975431           12


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      ...++..+|++++|+|..+..+... ..++..+.+....  ..|+++|.||+|+........++         .+++...
T Consensus        72 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilvgnK~Dl~~~~~v~~e~---------~~~~~~~  140 (170)
T d1r2qa_          72 APMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP--NIVIALSGNKADLANKRAVDFQE---------AQSYADD  140 (170)
T ss_dssp             HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred             HHHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCC--CceEEeecccccccccccccHHH---------HHHHHHh
Confidence            2234567899999999874432222 2233344433322  47899999999975443112211         3444444


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      .+.+++      ..||.++.+++++++.|.+.+.+
T Consensus       141 ~~~~~~------e~SAk~g~~V~e~f~~l~~~i~~  169 (170)
T d1r2qa_         141 NSLLFM------ETSAKTSMNVNEIFMAIAKKLPK  169 (170)
T ss_dssp             TTCEEE------ECCTTTCTTHHHHHHHHHHTSCC
T ss_pred             cCCEEE------EeeCCCCCCHHHHHHHHHHHHhh
Confidence            454332      35667789999999988765443

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=7e-16  Score=112.84  Aligned_cols=164  Identities=20%  Similarity=0.171  Sum_probs=98.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .++|+++|.+|+|||||+|++.+....... ..+.+........+.+ ++.  .+.+||+|+...     .   +++  .
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~-~~~t~~~~~~~~~~~~-~~~~~~~~~~d~~~~~g-----~---e~~--~   70 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDS-DCEVLGEDTYERTLMV-DGESATIILLDMWENKG-----E---NEW--L   70 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCC-C---CCTTEEEEEEEE-TTEEEEEEEECCTTTTH-----H---HHH--H
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccc-cccceeeecceeeecc-CCceeeeeeeccccccc-----c---ccc--c
Confidence            478999999999999999999876532221 1122222222233333 333  578999987431     1   112  2


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                      ...++..+|++|+|+|++++.+-.  .+..+.......  ....|+++|.||+|+.....-..++         .+++..
T Consensus        71 ~~~~~~~~~~~ilvfd~t~~~s~~--~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~---------~~~~a~  139 (172)
T d2g3ya1          71 HDHCMQVGDAYLIVYSITDRASFE--KASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSE---------GRACAV  139 (172)
T ss_dssp             HHCCCCCCSEEEEEEETTCHHHHH--HHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred             ccccccccceeeeeecccccchhh--hhhhhhhhhhhccccCCceEEEEeccccccccccccHHH---------HHHHHH
Confidence            234678999999999997443222  223333333222  2347999999999976543222222         234444


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      ..+.+++      ..||+++.+++++++.|.+.+..+
T Consensus       140 ~~~~~~~------e~Sak~g~~i~~~f~~l~~~i~~r  170 (172)
T d2g3ya1         140 VFDCKFI------ETSAAVQHNVKELFEGIVRQVRLR  170 (172)
T ss_dssp             HHTCEEE------ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HcCCeEE------EEeCCCCcCHHHHHHHHHHHHHHc
Confidence            4454432      356677899999999988877654

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=3.9e-16  Score=113.91  Aligned_cols=161  Identities=16%  Similarity=0.119  Sum_probs=96.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .++|+++|.+|+|||||++++++.... .....+..........+.. .+.  .+.+|||||....           ...
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~~-----------~~~   72 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKDGAFL-AGTFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERF-----------RSV   72 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC-----------------
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCC-cccccceeeeeeEEEEEEe-cCcEEEEEEEECCCchhh-----------HHH
Confidence            478999999999999999999876532 2222222233333334444 443  7889999997543           223


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      .......+|++++|+|..++.+... ...+..+.+...  ...|+++|.||+|.........++         ...+.+.
T Consensus        73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~~k~d~~~~~~v~~~~---------~~~~~~~  141 (170)
T d2g6ba1          73 THAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAHERVVKRED---------GEKLAKE  141 (170)
T ss_dssp             --CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTSCCCSCHHH---------HHHHHHH
T ss_pred             HHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccC--CCceEEEEEeeechhhcccccHHH---------HHHHHHH
Confidence            3356678899999999974332222 122222223222  246899999999977654222221         3455566


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHH
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIV  209 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~  209 (225)
                      .+.+++      ..|+.++.+++++++.|.+-++
T Consensus       142 ~~~~~~------e~Sak~g~gi~e~f~~l~~~i~  169 (170)
T d2g6ba1         142 YGLPFM------ETSAKTGLNVDLAFTAIAKELK  169 (170)
T ss_dssp             HTCCEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cCCEEE------EEeCCCCcCHHHHHHHHHHHcC
Confidence            665543      3355667899999998876553

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.2e-16  Score=117.38  Aligned_cols=164  Identities=17%  Similarity=0.140  Sum_probs=98.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCcee-EEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTK-TCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      ..+|+|+|.+|+|||||++++.+...... .   .+|. ......... ++.  .+.+|||+|.....           .
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~-~---~~t~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~-----------~   65 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEV-Y---VPTVFENYVADIEV-DGKQVELALWDTAGLEDYD-----------R   65 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSS-C---CCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGT-----------T
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCC-c---CCceeeeccccccc-cccceeeeccccCccchhc-----------c
Confidence            36899999999999999999987653211 1   1222 222222233 333  79999999976432           2


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhh----hc-CCch
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLG----RE-CPKP  168 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~----~~-~~~~  168 (225)
                      ....++..+|++|+|+|++++-+-+.  ..+...+.+..   ...|+++|.||+|.....  ...+...    +. ....
T Consensus        66 ~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~~~--~~~~~~~~~~~~~v~~~e  140 (177)
T d1kmqa_          66 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRNDE--HTRRELAKMKQEPVKPEE  140 (177)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTSCEEEEEECGGGTTCH--HHHHHHHHTTCCCCCHHH
T ss_pred             cchhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHhC---CCCceEEeeecccccchh--hHHHHHHHhhcccccHHH
Confidence            33456778999999999985432221  22334444332   237999999999986543  2111111    10 0112


Q ss_pred             HHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          169 LKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                      .+++.+..+.. .+    ..+||+++.+++++++.+.+.+
T Consensus       141 ~~~~a~~~~~~-~~----~E~SAkt~~gi~e~F~~i~~~~  175 (177)
T d1kmqa_         141 GRDMANRIGAF-GY----MECSAKTKDGVREVFEMATRAA  175 (177)
T ss_dssp             HHHHHHHTTCS-EE----EECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCc-EE----EEecCCCCcCHHHHHHHHHHHH
Confidence            34444444431 11    2456677899999999987664

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.70  E-value=1.1e-16  Score=124.77  Aligned_cols=126  Identities=19%  Similarity=0.232  Sum_probs=93.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcccc----------------ccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFK----------------SKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFD   81 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~   81 (225)
                      +..+|+++|+.|+|||||+.+|+-.....                ......+.|.......++| ++..++|+||||+.+
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~-~~~~~n~iDtPG~~d   83 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDAPGHVD   83 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEE-TTEEEEEECCCSSSS
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeecc-CCeEEEEecCCchhh
Confidence            44689999999999999999986322110                1112345667777788899 999999999999999


Q ss_pred             CCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHh
Q 036158           82 SSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYL  161 (225)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~  161 (225)
                      +.....       ..+    ..+|+.|+|+++.++....+...++...+.     ..|.++++||+|....   .+.+.+
T Consensus        84 F~~e~~-------~~l----~~~D~avlVvda~~Gv~~~T~~~w~~a~~~-----~lP~i~fINKmDr~~a---d~~~~l  144 (276)
T d2bv3a2          84 FTIEVE-------RSM----RVLDGAIVVFDSSQGVEPQSETVWRQAEKY-----KVPRIAFANKMDKTGA---DLWLVI  144 (276)
T ss_dssp             CSTTHH-------HHH----HHCCEEEEEEETTTSSCHHHHHHHHHHHTT-----TCCEEEEEECTTSTTC---CHHHHH
T ss_pred             hHHHHH-------HHH----HhhhheEEeccccCCcchhHHHHHHHHHHc-----CCCEEEEEeccccccc---ccchhH
Confidence            853222       222    244999999999989999999999888764     3899999999997655   555554


Q ss_pred             hh
Q 036158          162 GR  163 (225)
Q Consensus       162 ~~  163 (225)
                      .+
T Consensus       145 ~e  146 (276)
T d2bv3a2         145 RT  146 (276)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=9.8e-17  Score=117.87  Aligned_cols=169  Identities=16%  Similarity=0.216  Sum_probs=102.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (225)
                      ..|+|+|.+|+|||||+|+|++.+...... ...+++......... ....+.++|+||.....  ..............
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~~~~~~~~-~~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~   81 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQKISITSR-KAQTTRHRIVGIHTE-GAYQAIYVDTPGLHMEE--KRAINRLMNKAASS   81 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEECCC-CSSCCSSCEEEEEEE-TTEEEEEESSSSCCHHH--HHHHHHHHTCCTTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeecc-CCCceEEEEEeeeec-CCceeEeecCCCceecc--hhhhhhhhhhcccc
Confidence            469999999999999999999988654432 333333333333343 77788899999975321  11111111112223


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc
Q 036158          100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR  179 (225)
Q Consensus       100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (225)
                      ....+++++++.+.. +...........+.+   .  ..|.++|+||+|..... .....   .     ...+....+..
T Consensus        82 ~~~~~~~~l~~~d~~-~~~~~~~~~~~~l~~---~--~~~~i~v~~k~d~~~~~-~~~~~---~-----~~~~~~~~~~~  146 (179)
T d1egaa1          82 SIGDVELVIFVVEGT-RWTPDDEMVLNKLRE---G--KAPVILAVNKVDNVQEK-ADLLP---H-----LQFLASQMNFL  146 (179)
T ss_dssp             CCCCEEEEEEEEETT-CCCHHHHHHHHHHHS---S--SSCEEEEEESTTTCCCH-HHHHH---H-----HHHHHTTSCCS
T ss_pred             chhhcceeEEEEecC-ccchhHHHHHHHhhh---c--cCceeeeeeeeeccchh-hhhhh---H-----hhhhhhhcCCC
Confidence            345678888888876 444444444444432   2  36889999999987653 11111   1     23333333321


Q ss_pred             EEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          180 CVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       180 ~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                           ...+.||.++.++++|++.|.+.++|..
T Consensus       147 -----~~~~vSA~~g~gi~~L~~~i~~~lpe~~  174 (179)
T d1egaa1         147 -----DIVPISAETGLNVDTIAAIVRKHLPEAT  174 (179)
T ss_dssp             -----EEEECCTTTTTTHHHHHHHHHTTCCBCC
T ss_pred             -----CEEEEeCcCCCCHHHHHHHHHHhCCCCC
Confidence                 1223577888999999999988776553

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=4.2e-16  Score=113.60  Aligned_cols=160  Identities=20%  Similarity=0.183  Sum_probs=94.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .++|+|+|.+|+|||||++++.+.... ..   ..+|....+......++  ..+.+|||+|.....        ...  
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~-~~---~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~--------~~~--   67 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFI-WE---YDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI--------QRE--   67 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCC-SC---CCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH--------HHH--
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCC-Cc---cCCceeccccccccccccceEEEEeecccccccc--------cch--
Confidence            479999999999999999999976532 21   11232222222222244  378999999976431        111  


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHH-HHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAI-HILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                        .+...+|++++|+|..++.+......+ ..+... ......|+++|.||+|+.....-..++         .+++.+.
T Consensus        68 --~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilvgnK~Dl~~~r~V~~~e---------~~~~a~~  135 (168)
T d2atva1          68 --GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEI-KKPKNVTLILVGNKADLDHSRQVSTEE---------GEKLATE  135 (168)
T ss_dssp             --HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH-HTTSCCCEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred             --hhhcccccceeecccCCccchhhhhhhccccccc-ccccCcceeeeccchhhhhhccCcHHH---------HHHHHHH
Confidence              123356999999999855333333222 222222 222347999999999975432111111         3445555


Q ss_pred             cCCcEEEeeCCCccccccHH-HHHHHHHHHHHHHHH
Q 036158          176 CDNRCVLFDNKTKDTAKRTE-QVGKLLSLVNSVIVQ  210 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~-~v~~l~~~i~~~~~~  210 (225)
                      .+.+|+      .+||+++. +|++++..|.+.+.+
T Consensus       136 ~~~~~~------e~Saktg~gnV~e~F~~l~~~i~~  165 (168)
T d2atva1         136 LACAFY------ECSACTGEGNITEIFYELCREVRR  165 (168)
T ss_dssp             HTSEEE------ECCTTTCTTCHHHHHHHHHHHHHH
T ss_pred             hCCeEE------EEccccCCcCHHHHHHHHHHHHHH
Confidence            565432      33555556 599998877665543

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=2.4e-16  Score=116.57  Aligned_cols=163  Identities=12%  Similarity=0.062  Sum_probs=95.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEee-CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLK-DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      ++|+|+|.+|||||||++++++...... . .+.............. ....+.++||||..+.....           .
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~-~-~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~-----------~   69 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQ-Y-KATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG-----------V   69 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSS-C-CCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSC-----------C
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCC-c-CCccceeeeeeeeeeCCceEEEEeeecCCcccccccc-----------c
Confidence            7899999999999999999997663222 1 1222222222223321 22378899999976543221           2


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                      .....+|++++|+|..+..+... ..+++.+......  ....|+++|.||+|+.... ...++         ..+....
T Consensus        70 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~-~~~~~---------~~~~~~~  139 (184)
T d1vg8a_          70 AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-VATKR---------AQAWCYS  139 (184)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-SCHHH---------HHHHHHH
T ss_pred             ccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccc-hhHHH---------HHHHHHH
Confidence            34567899999999974322222 2233334433222  1236899999999975432 11111         2223222


Q ss_pred             -cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          176 -CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       176 -~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                       .+.++      ..+||.++.+++++++.+.+.+.++
T Consensus       140 ~~~~~~------~e~Sak~~~gI~e~f~~l~~~i~~~  170 (184)
T d1vg8a_         140 KNNIPY------FETSAKEAINVEQAFQTIARNALKQ  170 (184)
T ss_dssp             TTSCCE------EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             hcCCeE------EEEcCCCCcCHHHHHHHHHHHHHhc
Confidence             22233      2346677899999999886655443

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=6.1e-16  Score=112.84  Aligned_cols=162  Identities=25%  Similarity=0.215  Sum_probs=99.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      +.++|+++|.+|+|||||++++.+.... .... +.. .......... ++  ..+.+|||+|.........        
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~-~~~~-~t~-~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~--------   70 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFV-PDYD-PTI-EDSYLKHTEI-DNQWAILDVLDTAGQEEFSAMRE--------   70 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCC-TTCC-TTC-CEEEEEEEEE-TTEEEEEEEEECCSCGGGCSSHH--------
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCC-cccC-cce-eecccccccc-ccccccccccccccccccccchh--------
Confidence            5689999999999999999999876532 2111 111 1222223333 33  3788999999875532221        


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (225)
                         .++..+|++++|+|.+++-+-.. ..++..+.+... ....|++++.||+|+.....-..++         ..++.+
T Consensus        71 ---~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~-~~~~p~ilvgnK~Dl~~~~~v~~e~---------~~~~~~  137 (169)
T d1x1ra1          71 ---QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMHLRKVTRDQ---------GKEMAT  137 (169)
T ss_dssp             ---HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-SSCCCEEEEEECTTCSTTCCSCHHH---------HHHHHH
T ss_pred             ---hhhhhccEEEEecccccchhhhccchhhHHHHhhcc-ccCccEEEEecccchhhhceeehhh---------HHHHHH
Confidence               12345699999999985433222 223444444332 2347899999999987654222222         345566


Q ss_pred             HcCCcEEEeeCCCccccccH-HHHHHHHHHHHHHHHH
Q 036158          175 LCDNRCVLFDNKTKDTAKRT-EQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~-~~v~~l~~~i~~~~~~  210 (225)
                      ..+.+|+..      ||+++ .+|++++..+.+.+.+
T Consensus       138 ~~~~~~~e~------Sak~~~~nV~~~F~~l~~~i~~  168 (169)
T d1x1ra1         138 KYNIPYIET------SAKDPPLNVDKTFHDLVRVIRQ  168 (169)
T ss_dssp             HHTCCEEEE------BCSSSCBSHHHHHHHHHHHHHH
T ss_pred             HcCCEEEEE------cCCCCCcCHHHHHHHHHHHHHh
Confidence            666655443      33333 4899999888776654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=1.1e-16  Score=116.79  Aligned_cols=159  Identities=18%  Similarity=0.151  Sum_probs=96.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .++|+++|.+|+|||||++++++.......  .+..........+.. .+  ..+.+|||+|.....           ..
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~--~~t~~~~~~~~~i~~-~~~~~~l~i~d~~g~~~~~-----------~~   68 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENK--EPTIGAAFLTQRVTI-NEHTVKFEIWDTAGQERFA-----------SL   68 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTC--CCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGG-----------GG
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccc--cccccceeecccccc-ccccccccccccCCchhHH-----------HH
Confidence            479999999999999999999977643222  122222222233333 33  379999999975431           11


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhcccccccEEEEEecCCCCCCCcc-cHHHHhhhcCCchHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGA-AIHILESLFGKKISDYMIVVFTGGDELEDNDE-TLEDYLGRECPKPLKEILQ  174 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~-~~~~~~~~~~~~~~~~~~~  174 (225)
                      ....+..+|++++|+|..++.+..... ++..+....  ....+++++.||+|+...... .+.       ....+++.+
T Consensus        69 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~~~v~nk~d~~~~~~~~~v~-------~~~~~~~~~  139 (170)
T d1ek0a_          69 APMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA--SKDIIIALVGNKIDMLQEGGERKVA-------REEGEKLAE  139 (170)
T ss_dssp             HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CTTCEEEEEEECGGGGGSSCCCCSC-------HHHHHHHHH
T ss_pred             HHHHHhccceEEEEEeCCcccchhhhhhhhhhhcccc--ccccceeeeecccccccccchhhhh-------HHHHHHHHH
Confidence            123456789999999998543333322 222233322  234789999999997644211 110       011344555


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNS  206 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~  206 (225)
                      ..+.+|+      ..||+++.++++++..|.+
T Consensus       140 ~~~~~~~------e~Sak~g~gV~e~F~~i~~  165 (170)
T d1ek0a_         140 EKGLLFF------ETSAKTGENVNDVFLGIGE  165 (170)
T ss_dssp             HHTCEEE------ECCTTTCTTHHHHHHHHHT
T ss_pred             HcCCEEE------EecCCCCcCHHHHHHHHHH
Confidence            5565443      3456677999999988754

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=6.9e-16  Score=111.92  Aligned_cols=162  Identities=14%  Similarity=0.047  Sum_probs=93.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      .++|+|+|.+|+|||||+++++............+............ ....+.++|++|....          ......
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~~   70 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDG-ERIKIQLWDTAGQERF----------RKSMVQ   70 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETT-EEEEEEEEECCCSHHH----------HTTTHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeec-cceEEEEEeccCchhh----------ccccce
Confidence            37899999999999999999997664333222222222222222221 3347899999995421          111122


Q ss_pred             hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158           99 MTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      .+...+|++|+|+|..++-+-+. ..++..+.+.... ...|+++|.||.|+........++         .+++.+..+
T Consensus        71 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pi~lvgnK~Dl~~~~~v~~~~---------~~~~~~~~~  140 (165)
T d1z06a1          71 HYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLA-NDIPRILVGNKCDLRSAIQVPTDL---------AQKFADTHS  140 (165)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCC-SCCCEEEEEECTTCGGGCCSCHHH---------HHHHHHHTT
T ss_pred             eeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccC-CCCeEEEEeccccchhccchhHHH---------HHHHHHHCC
Confidence            34567899999999985433322 2233344333222 247999999999976543112221         345566666


Q ss_pred             CcEEEeeCCCccccccHHHHHHHHHHH
Q 036158          178 NRCVLFDNKTKDTAKRTEQVGKLLSLV  204 (225)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i  204 (225)
                      .+++..+...   ...+.+|+++++.|
T Consensus       141 ~~~~e~SAkt---~~~~~~V~e~F~~l  164 (165)
T d1z06a1         141 MPLFETSAKN---PNDNDHVEAIFMTL  164 (165)
T ss_dssp             CCEEECCSSS---GGGGSCHHHHHHHH
T ss_pred             CEEEEEeccc---CCcCcCHHHHHHHh
Confidence            6544322211   12346888888765

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=6.2e-16  Score=112.50  Aligned_cols=162  Identities=17%  Similarity=0.149  Sum_probs=95.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEe-eCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTML-KDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ..++|+|+|.+|+|||||++++...... ...  .++........+.. .....+.+||++|........          
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~-~~~--~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~----------   68 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFV-EKY--DPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMR----------   68 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCC-CSC--CCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHH----------
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCC-Ccc--CCccccccceeEEeeeeEEEeccccccCcccccccc----------
Confidence            4689999999999999999999876632 211  11111222222222 122379999999987653211          


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQL  175 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (225)
                       ..+...+|++|+|+|.+++.+-+. ..++..+.+... ....|+++|.||+|+........++         ...+.+.
T Consensus        69 -~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~-~~~~p~ilvgnK~Dl~~~~~~~~~~---------~~~~~~~  137 (167)
T d1c1ya_          69 -DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDERVVGKEQ---------GQNLARQ  137 (167)
T ss_dssp             -HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-CSCCCEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred             -cccccccceeEEeeeccchhhhHhHHHHHHHHHHhcC-CCCCeEEEEEEecCcccccccchhH---------HHHHHHH
Confidence             123345699999999975432222 223333333222 1246899999999976543222211         2333333


Q ss_pred             cCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          176 CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                      ... ...+    .+||+++.+++++++.|.+.+
T Consensus       138 ~~~-~~~~----e~Sak~g~gv~e~F~~l~~~i  165 (167)
T d1c1ya_         138 WCN-CAFL----ESSAKSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             TTS-CEEE----ECBTTTTBSHHHHHHHHHHHH
T ss_pred             hCC-CEEE----EEcCCCCcCHHHHHHHHHHHh
Confidence            222 1122    356778899999999887654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.5e-15  Score=112.40  Aligned_cols=167  Identities=16%  Similarity=0.080  Sum_probs=97.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEI   93 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~   93 (225)
                      ....++|+|+|.+|+|||||+++++.... ....  .++........+.. .+  ..+.+|||||...+..         
T Consensus         6 ~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f-~~~~--~~Ti~~~~~~~~~~-~~~~~~l~i~D~~g~e~~~~---------   72 (185)
T d2atxa1           6 GALMLKCVVVGDGAVGKTCLLMSYANDAF-PEEY--VPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDR---------   72 (185)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSC-CCSC--CCSSCCCEEEEEES-SSCEEEEEEECCCCSSSSTT---------
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHhhCCC-CCcC--CCceeeeeeEEEee-CCceEEeecccccccchhhh---------
Confidence            34568999999999999999999987553 2221  11112222222333 33  3688999999875432         


Q ss_pred             HHHHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhc----CCc
Q 036158           94 VKCIGMTKDGIHAVLVVFSVRNRFSEEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRE----CPK  167 (225)
Q Consensus        94 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~----~~~  167 (225)
                        ....++..+|++++|+|++++-+-+.  ..+...+++.. .  ..|+++|.||+|+..+. ..........    ..+
T Consensus        73 --~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~-~--~~~~ilvgnK~Dl~~~~-~~~~~~~~~~~r~v~~~  146 (185)
T d2atxa1          73 --LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-P--NVPFLLIGTQIDLRDDP-KTLARLNDMKEKPICVE  146 (185)
T ss_dssp             --TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-T--TCCEEEEEECTTSTTCH-HHHHHHTTTTCCCCCHH
T ss_pred             --hhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhcC-C--CCCeeEeeeccccccch-hhhhhhhhcccccccHH
Confidence              22346778999999999985433222  22333444332 2  37899999999976543 1111111110    011


Q ss_pred             hHHHHHHHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          168 PLKEILQLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       168 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                      ...++.+..+. .|+      .+||+++.+++++++.+.+.
T Consensus       147 ~~~~~a~~~~~~~~~------E~SAk~~~gv~e~F~~li~~  181 (185)
T d2atxa1         147 QGQKLAKEIGACCYV------ECSALTQKGLKTVFDEAIIA  181 (185)
T ss_dssp             HHHHHHHHHTCSCEE------ECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEE------EecCCCCcCHHHHHHHHHHH
Confidence            13344444442 222      35777889999998877543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.66  E-value=6.4e-16  Score=120.15  Aligned_cols=113  Identities=27%  Similarity=0.309  Sum_probs=86.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccC----------------CCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCC
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKA----------------GSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS   83 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~   83 (225)
                      .+|+++|+.++|||||+.+|+.........                ...+.|.......+.| ++..++++||||+.++.
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~-~~~~~n~iDtPGh~dF~   81 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGYGDFV   81 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCSGGGH
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccc-cccceeEEccCchhhhh
Confidence            579999999999999999986332111100                1234577777778899 89999999999998772


Q ss_pred             CCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCC
Q 036158           84 ADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDE  149 (225)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~  149 (225)
                             .+....+.    .+|++|+|+|+.++......+.++.+.+.     ..|.++++||+|.
T Consensus        82 -------~e~~~al~----~~D~avlvvda~~Gv~~~t~~~~~~~~~~-----~~p~~i~iNk~D~  131 (267)
T d2dy1a2          82 -------GEIRGALE----AADAALVAVSAEAGVQVGTERAWTVAERL-----GLPRMVVVTKLDK  131 (267)
T ss_dssp             -------HHHHHHHH----HCSEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCEEEEEECGGG
T ss_pred             -------hhhhhhhc----ccCceEEEeeccCCccchhHHHHHhhhhc-----ccccccccccccc
Confidence                   33333333    34999999999889999999999888875     3799999999996

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.66  E-value=1.1e-15  Score=109.69  Aligned_cols=156  Identities=12%  Similarity=0.052  Sum_probs=93.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhh
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGM   99 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~   99 (225)
                      ++|+|+|++|||||||+|+|.+.+......     +.......... ....+.++|+||....           ......
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~d~~g~~~~-----------~~~~~~   63 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVEY-KNISFTVWDVGGQDKI-----------RPLWRH   63 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCC-----CSSCCEEEEEC-SSCEEEEEECCCCGGG-----------HHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcccc-----ceeeEEEEEee-eeEEEEEecCCCcccc-----------hhhhhh
Confidence            589999999999999999999766432211     11122223344 6678999999997532           122233


Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcC
Q 036158          100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGK--KISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus       100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      ....+++++++++..++.+..  ....++.+....  ....|++++.||.|.....  ...+....       .....+.
T Consensus        64 ~~~~~~~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~--~~~~i~~~-------~~~~~~~  132 (160)
T d1r8sa_          64 YFQNTQGLIFVVDSNDRERVN--EAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDK-------LGLHSLR  132 (160)
T ss_dssp             HTTTCSEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHH-------TTGGGCS
T ss_pred             hhccceeEEEEEEecChHHHH--HHHHHHHHHHHhhcccCceEEEEeecccccccc--cHHHHHHH-------HHHHHHh
Confidence            456779999999987443322  223333333222  1347899999999976543  22222211       0011111


Q ss_pred             CcEEEeeCCCccccccHHHHHHHHHHHHH
Q 036158          178 NRCVLFDNKTKDTAKRTEQVGKLLSLVNS  206 (225)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~  206 (225)
                      ...+.   ..+.||+++.++++++++|.+
T Consensus       133 ~~~~~---~~~~SAktg~gi~e~~~~l~~  158 (160)
T d1r8sa_         133 HRNWY---IQATCATSGDGLYEGLDWLSN  158 (160)
T ss_dssp             SCCEE---EEECBTTTTBTHHHHHHHHHH
T ss_pred             hCCCE---EEEeECCCCCCHHHHHHHHHh
Confidence            11111   235678889999999999864

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.65  E-value=2.1e-15  Score=110.37  Aligned_cols=163  Identities=12%  Similarity=0.072  Sum_probs=96.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ++.++|+|+|.+|||||||+|+|.+........ ..+.+    ...... .+..+.++|++|......           .
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~-~~~~~----~~~~~~-~~~~~~~~d~~~~~~~~~-----------~   75 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSP-TIGSN----VEEIVI-NNTRFLMWDIGGQESLRS-----------S   75 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEEC-CSCSS----CEEEEE-TTEEEEEEECCC----CG-----------G
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCcccc-cccee----EEEEee-cceEEEEecccccccccc-----------c
Confidence            566999999999999999999999887643322 22211    122333 677899999998664321           1


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHc
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLC  176 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (225)
                      .......++++++|++..+..+....................|+++|.||.|.....  ..++..+.      .......
T Consensus        76 ~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~i~~~------~~~~~~~  147 (177)
T d1zj6a1          76 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM--TVAEISQF------LKLTSIK  147 (177)
T ss_dssp             GHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC--CHHHHHHH------HTGGGCC
T ss_pred             hhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccC--cHHHHHHH------HHHHhhH
Confidence            122344679999999987444443322222222222222457999999999976543  22222111      0000001


Q ss_pred             CCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          177 DNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                      ...+..    ...||.++.|+++++++|.+.+
T Consensus       148 ~~~~~~----~~~Sa~tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         148 DHQWHI----QACCALTGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             SSCEEE----EECBTTTTBTHHHHHHHHHHHH
T ss_pred             hcCCEE----EEEeCCCCCCHHHHHHHHHHHh
Confidence            112222    3457788899999999998765

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=2e-16  Score=118.97  Aligned_cols=119  Identities=11%  Similarity=0.176  Sum_probs=77.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      +++|+|+|++|+|||||+|+|++...      .+++|+......+.. ++..+.++||||.....       ..+.....
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~------~~~tt~~~~~~~~~~-~~~~~~l~D~~g~~~~~-------~~~~~~~~   68 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSV------RPTVVSQEPLSAADY-DGSGVTLVDFPGHVKLR-------YKLSDYLK   68 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSC------CCBCCCSSCEEETTG-GGSSCEEEECCCCGGGT-------HHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC------CCeEEecceEEEEEe-CCeEEEEEecccccchh-------hHHHHHHH
Confidence            57999999999999999999998764      233444555555555 77789999999976432       12233333


Q ss_pred             hcCCCccEEEEEEeCCCC-C-CHHHHHHH----HHHHHHhcccccccEEEEEecCCCCCCC
Q 036158           99 MTKDGIHAVLVVFSVRNR-F-SEEEGAAI----HILESLFGKKISDYMIVVFTGGDELEDN  153 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~-~-~~~~~~~~----~~l~~~~~~~~~~~~~vv~~k~D~~~~~  153 (225)
                      ......+.+++++++... . .....+.+    ..+....  ....|+++|+||+|.....
T Consensus        69 ~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          69 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSC--ENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             HHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHS--TTCCCEEEEEECTTSTTCC
T ss_pred             HHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHH--hccCCeEEEEEeecccccC
Confidence            344455888888887522 1 12222222    2222222  2347999999999987654

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.9e-15  Score=110.60  Aligned_cols=161  Identities=16%  Similarity=0.061  Sum_probs=96.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      .+.++|+|+|.+|+|||||+|+++........  .+............. .+  ..+.+|||+|..+.           .
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~-----------~   69 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQL--FHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQERF-----------R   69 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEEE-TTEEEEEEEEECCCCGGG-----------H
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCcc--ccceeeeeeeeeeee-cCceeeEeeecccCccee-----------h
Confidence            34579999999999999999999876532221  122222222333333 33  36789999996532           2


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhccc--ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKK--ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKE  171 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~--~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~  171 (225)
                      .........+|++++++|..++.+-.. ..+++.+.+.....  ...|+++|.||+|+.+.. ...++         .++
T Consensus        70 ~~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~-v~~~~---------~~~  139 (174)
T d1wmsa_          70 SLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-VSTEE---------AQA  139 (174)
T ss_dssp             HHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-SCHHH---------HHH
T ss_pred             hhhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhcc-CcHHH---------HHH
Confidence            233456678899999999974433222 23344444433221  236899999999975431 11111         344


Q ss_pred             HHHHcC-CcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          172 ILQLCD-NRCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       172 ~~~~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                      +.+..+ .++      ..+|+.++.+++++++.+.+-
T Consensus       140 ~~~~~~~~~~------~e~Sak~~~gI~e~f~~l~~~  170 (174)
T d1wmsa_         140 WCRDNGDYPY------FETSAKDATNVAAAFEEAVRR  170 (174)
T ss_dssp             HHHHTTCCCE------EECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHcCCCeE------EEEcCCCCcCHHHHHHHHHHH
Confidence            554443 232      235667779999998777543

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.7e-16  Score=117.00  Aligned_cols=168  Identities=17%  Similarity=0.120  Sum_probs=97.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIVK   95 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~~   95 (225)
                      +.++|+|+|.+|+|||||++++...... ..  ..++........... .+.  .+.+|||||..++.           .
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f~-~~--~~~t~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~-----------~   66 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKFP-SE--YVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYD-----------R   66 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCC-SS--CCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGT-----------T
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCC-CC--cCCceeeecceeEee-CCceeeeeccccccchhhh-----------h
Confidence            3589999999999999999999876532 21  112222222223333 333  78999999976442           2


Q ss_pred             HHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcC----CchH
Q 036158           96 CIGMTKDGIHAVLVVFSVRNRFSEEEG--AAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGREC----PKPL  169 (225)
Q Consensus        96 ~~~~~~~~~~~ii~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~----~~~~  169 (225)
                      ....++..+|++++|+|++++-+-+..  .+...+.. ..  ...|+++|.||+|+.... ...+.......    .+..
T Consensus        67 ~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~-~~--~~~~i~lvgnK~Dl~~~~-~~~~~~~~~~~~~v~~~~~  142 (191)
T d2ngra_          67 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HC--PKTPFLLVGTQIDLRDDP-STIEKLAKNKQKPITPETA  142 (191)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HC--TTCCEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHHH
T ss_pred             hhhhcccccceeecccccchHHHHHHHHHHHHHHHhh-cC--CCCceEEEeccccccccc-hhhhhhhhcccccccHHHH
Confidence            233567789999999999854322221  12233332 22  247999999999976542 11121111100    0112


Q ss_pred             HHHHHHcCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          170 KEILQLCDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       170 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      +++....+. .+      ...||+++.+++++++.+.+.+-+
T Consensus       143 ~~~~~~~~~~~~------~e~SAk~~~~V~e~f~~l~~~~~~  178 (191)
T d2ngra_         143 EKLARDLKAVKY------VECSALTQKGLKNVFDEAILAALE  178 (191)
T ss_dssp             HHHHHHTTCSCE------EECCTTTCTTHHHHHHHHHHHHTS
T ss_pred             HHHHHHcCCCeE------EEEeCCCCcCHHHHHHHHHHHHhc
Confidence            333334332 22      234667779999999877665443

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=1.7e-16  Score=121.90  Aligned_cols=141  Identities=16%  Similarity=0.199  Sum_probs=96.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccc-----------------------------cccCCCCCceeEEEEEEEEeeC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAF-----------------------------KSKAGSSGVTKTCEMQRTMLKD   67 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~~~~~   67 (225)
                      +++++|+++|+.++|||||+.+|+.....                             .......+.|..+....+.+ .
T Consensus         4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~   82 (239)
T d1f60a3           4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-P   82 (239)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-S
T ss_pred             CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEecc-C
Confidence            45689999999999999999988632110                             00011346777777788888 8


Q ss_pred             CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccccE
Q 036158           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNR-------FSEEEGAAIHILESLFGKKISDYM  140 (225)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~  140 (225)
                      +++++|+||||+.++           ...+......+|++|+|+++..+       .....++.+..... ++-   +++
T Consensus        83 ~~~i~iiDtPGH~df-----------~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~-~gv---~~i  147 (239)
T d1f60a3          83 KYQVTVIDAPGHRDF-----------IKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-LGV---RQL  147 (239)
T ss_dssp             SEEEEEEECCCCTTH-----------HHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-TTC---CEE
T ss_pred             CEEEEEEECCCcHHH-----------HHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH-cCC---CeE
Confidence            899999999999875           22233456688999999999743       12234444444443 332   578


Q ss_pred             EEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCC
Q 036158          141 IVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDN  178 (225)
Q Consensus       141 ~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (225)
                      ++++||+|....+...+.+...+     +..++...+.
T Consensus       148 iv~iNKmD~~~~d~~~~~~~~~e-----l~~~l~~~~~  180 (239)
T d1f60a3         148 IVAVNKMDSVKWDESRFQEIVKE-----TSNFIKKVGY  180 (239)
T ss_dssp             EEEEECGGGGTTCHHHHHHHHHH-----HHHHHHHHTC
T ss_pred             EEEEECCCCCCCCHHHHHHHHHH-----HHHHHHhcCC
Confidence            89999999887664555665555     6777766654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=6.8e-16  Score=111.14  Aligned_cols=163  Identities=8%  Similarity=0.005  Sum_probs=96.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT  100 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (225)
                      ||+++|.+|+|||||+|+|.+......     .+|.......... .+..+.++|++|....           .......
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~~~~~   64 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATL-----QPTWHPTSEELAI-GNIKFTTFDLGGHIQA-----------RRLWKDY   64 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCC-----CCCCSCEEEEECC-TTCCEEEEECCCSGGG-----------GGGGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCee-----eceeeEeEEEecc-CCeeEEEEeeccchhh-----------hhhHhhh
Confidence            799999999999999999998775322     2344444445555 6778999999986532           1223345


Q ss_pred             CCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc
Q 036158          101 KDGIHAVLVVFSVRNRFSEEEGA-AIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR  179 (225)
Q Consensus       101 ~~~~~~ii~v~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (225)
                      ...+++++++++..+........ .+..... .......|++++.||.|.....  ...+..+................+
T Consensus        65 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~i~~~k~d~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~  141 (166)
T d2qtvb1          65 FPEVNGIVFLVDAADPERFDEARVELDALFN-IAELKDVPFVILGNKIDAPNAV--SEAELRSALGLLNTTGSQRIEGQR  141 (166)
T ss_dssp             CTTCSEEEEEEETTCGGGHHHHHHHHHHHHT-CTTTTTCCEEEEEECTTSSSCC--CHHHHHHHHTCSSCCC---CCSSC
T ss_pred             hhheeeeeeeccccchhhhhhhhHHHHhhhh-hhccCCceEEEEeccccccccC--CHHHHHHHhhhhhhhHHHhhcccC
Confidence            66789999999987443332221 2222211 1223457899999999986543  223222110000000000000111


Q ss_pred             EEEeeCCCccccccHHHHHHHHHHHHH
Q 036158          180 CVLFDNKTKDTAKRTEQVGKLLSLVNS  206 (225)
Q Consensus       180 ~~~~~~~~~~~~~~~~~v~~l~~~i~~  206 (225)
                      .+   ....+||.++.++++++++|.+
T Consensus       142 ~~---~~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         142 PV---EVFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             CE---EEEEEBTTTTBSHHHHHHHHTT
T ss_pred             CC---EEEEeeCCCCCCHHHHHHHHhC
Confidence            11   1234578889999999999865

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4.3e-15  Score=109.57  Aligned_cols=168  Identities=16%  Similarity=0.092  Sum_probs=97.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      .+.++|+|+|.+|+|||||+|+++....... .  .++........+.. ++.  .+.+||++|.....           
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~-~--~~ti~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~-----------   67 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGE-Y--IPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYD-----------   67 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSS-C--CCCSCCEEEEEEEE-TTEEEEEEEECCCCSGGGT-----------
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCcc-c--ccceeeceeeeeec-cCcceEEEeecccccccch-----------
Confidence            3468999999999999999999997663222 1  11222222222333 333  67899999975432           


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhc-CCc---h
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEE--GAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRE-CPK---P  168 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~-~~~---~  168 (225)
                      .....++..+|++++|+|++++-+-..  ..++..++...   ...|+++|.||+|+.... ...++..... ...   .
T Consensus        68 ~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~---~~~piilvgnK~Dl~~~~-~~~~~~~~~~~~~~~~~~  143 (183)
T d1mh1a_          68 RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDK-DTIEKLKEKKLTPITYPQ  143 (183)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTSCEEEEEECHHHHTCH-HHHHHHHHTTCCCCCHHH
T ss_pred             hhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHhC---CCCcEEEEeecccchhhh-hhhhhhhhccccchhhHH
Confidence            222346778999999999985433222  12333343322   237999999999976543 1111111110 011   1


Q ss_pred             HHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          169 LKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                      ...+.+..+. +.++    .+||+++.+++++++.+.+.+
T Consensus       144 ~~~~a~~~~~-~~~~----E~SAk~~~~V~e~F~~l~~~i  178 (183)
T d1mh1a_         144 GLAMAKEIGA-VKYL----ECSALTQRGLKTVFDEAIRAV  178 (183)
T ss_dssp             HHHHHHHTTC-SEEE----ECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHcCC-ceEE----EcCCCCCcCHHHHHHHHHHHH
Confidence            2233333332 2222    346677799999988886554

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.62  E-value=2.7e-14  Score=103.10  Aligned_cols=164  Identities=12%  Similarity=0.077  Sum_probs=101.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      .+.++|+++|.+|||||||+|++++......     ..|.......... ++..+.++|+||.....           ..
T Consensus         3 ~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~   65 (169)
T d1upta_           3 TREMRILILGLDGAGKTTILYRLQVGEVVTT-----IPTIGFNVETVTY-KNLKFQVWDLGGLTSIR-----------PY   65 (169)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCC-----CCCSSEEEEEEEE-TTEEEEEEEECCCGGGG-----------GG
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhCCCCcce-----ecccceeeeeecc-CceEEEEeecccccccc-----------cc
Confidence            4568999999999999999999998765322     2233333344444 78899999999976431           22


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHH-H
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGA-AIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEIL-Q  174 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~-~  174 (225)
                      ........+.++++++..+........ .+...... ......|++++.||.|+....  ...+....        +. .
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~iv~nk~Dl~~~~--~~~~i~~~--------~~~~  134 (169)
T d1upta_          66 WRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEE-EELRKAILVVFANKQDMEQAM--TSSEMANS--------LGLP  134 (169)
T ss_dssp             GGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCC--CHHHHHHH--------HTGG
T ss_pred             chhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhh-hccccceEEEEEeeccccccc--cHHHHHHH--------HHHH
Confidence            223455779999999886333333222 11111111 122347889999999987553  22222221        11 1


Q ss_pred             HcCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          175 LCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      .+..+.+.+   .+.||.++.+++++++.|.+.++++
T Consensus       135 ~~~~~~~~~---~~~SA~~g~gv~e~~~~l~~~l~~k  168 (169)
T d1upta_         135 ALKDRKWQI---FKTSATKGTGLDEAMEWLVETLKSR  168 (169)
T ss_dssp             GCTTSCEEE---EECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             HHhcCCCEE---EEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            122222222   3457778899999999998887654

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=9.4e-15  Score=107.05  Aligned_cols=159  Identities=19%  Similarity=0.186  Sum_probs=91.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc--eEEEEeCCCCCCCCCCcHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ--VVNVIDTPGLFDSSADSEFVSKEIV   94 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtPG~~~~~~~~~~~~~~~~   94 (225)
                      .+.++|+++|..|+|||||++++++... ..   ...++.......+.. ++.  .+.+|||+|....         .  
T Consensus         3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f-~~---~~~t~~~~~~~~i~v-~~~~~~l~i~Dt~g~~~~---------~--   66 (175)
T d2bmja1           3 IPELRLGVLGDARSGKSSLIHRFLTGSY-QV---LEKTESEQYKKEMLV-DGQTHLVLIREEAGAPDA---------K--   66 (175)
T ss_dssp             CCEEEEEEECCTTTTHHHHHHHHHHSCC-CC---CCCSSCEEEEEEEEE-TTEEEEEEEEECSSCCCH---------H--
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCC-CC---cCCccceeEEEEeec-CceEEEEEEeeccccccc---------c--
Confidence            4679999999999999999999997764 22   112222222333444 554  6889999996521         1  


Q ss_pred             HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhccc-ccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHH
Q 036158           95 KCIGMTKDGIHAVLVVFSVRNRFSEEE-GAAIHILESLFGKK-ISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEI  172 (225)
Q Consensus        95 ~~~~~~~~~~~~ii~v~~~~~~~~~~~-~~~~~~l~~~~~~~-~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~  172 (225)
                           ++..+|++|+|+|.+++-+-+. ..+.+++.+..... ...|+++|.||.|........+..       ...+.+
T Consensus        67 -----~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~-------~~~~~~  134 (175)
T d2bmja1          67 -----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGD-------ARARAL  134 (175)
T ss_dssp             -----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCH-------HHHHHH
T ss_pred             -----cccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhH-------HHHHHH
Confidence                 1234699999999985433222 22344554432221 235889999988864332111111       012333


Q ss_pred             HHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHHH
Q 036158          173 LQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVI  208 (225)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~  208 (225)
                      ...... +.++    ..||+.+.++++++..+.+.+
T Consensus       135 ~~~~~~-~~~~----e~SAk~~~~v~~~F~~l~~~i  165 (175)
T d2bmja1         135 CADMKR-CSYY----ETCATYGLNVDRVFQEVAQKV  165 (175)
T ss_dssp             HHTSTT-EEEE----EEBTTTTBTHHHHHHHHHHHH
T ss_pred             HHHhCC-CeEE----EeCCCCCcCHHHHHHHHHHHH
Confidence            333221 2222    346667789999887666443

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=1.1e-14  Score=109.29  Aligned_cols=120  Identities=17%  Similarity=0.200  Sum_probs=72.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc
Q 036158           21 NLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT  100 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~  100 (225)
                      +|+++|++|+|||||+|+|++......   .++.+............+..+.++||||....       .   ...+...
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~-------~---~~~~~~~   68 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDT---QTSITDSSAIYKVNNNRGNSLTLIDLPGHESL-------R---FQLLDRF   68 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCB---CCCCSCEEEEEECSSTTCCEEEEEECCCCHHH-------H---HHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc---cCCeeEEEEEEEEeeeeeeeeeeeeccccccc-------c---chhhhhh
Confidence            699999999999999999998765332   22222222222322224568999999996411       1   1222334


Q ss_pred             CCCccEEEEEEeCCCCCCH--H-HHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158          101 KDGIHAVLVVFSVRNRFSE--E-EGAAIHILESLFGKKISDYMIVVFTGGDELEDN  153 (225)
Q Consensus       101 ~~~~~~ii~v~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~  153 (225)
                      ...++.+++|+|+.+....  + ...+.+.+..........|++||.||+|+....
T Consensus        69 ~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~  124 (207)
T d2fh5b1          69 KSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK  124 (207)
T ss_dssp             GGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred             hhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCC
Confidence            4577999999998732211  1 122223333222122236889999999987543

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=6.4e-14  Score=102.84  Aligned_cols=166  Identities=14%  Similarity=0.079  Sum_probs=94.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC--ceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG--QVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ..+|+++|.+|+|||||+++++..... ...  .++........... ++  ..+.+|||+|......           .
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~-~~~--~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~-----------~   66 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFP-ENY--VPTVFENYTASFEI-DTQRIELSLWDTSGSPYYDN-----------V   66 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCC-SSC--CCCSEEEEEEEEEC-SSCEEEEEEEEECCSGGGTT-----------T
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCC-Ccc--CCceeecccccccc-cceEEeeccccccccccccc-----------c
Confidence            368999999999999999999876532 211  11112233333343 33  3788999999764321           1


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHH-HH-HHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcC----CchHH
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEE-GA-AIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGREC----PKPLK  170 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~----~~~~~  170 (225)
                      ....+..+|++|+|+|++++-+-.. .. +...+.. ..  ...|+++|.||.|..... ....+......    .+...
T Consensus        67 ~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~-~~--~~~~iilVgnK~Dl~~~~-~~~~~~~~~~~~~V~~~e~~  142 (179)
T d1m7ba_          67 RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE-FC--PNTKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQGA  142 (179)
T ss_dssp             GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HC--TTCEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHHHH
T ss_pred             ccchhhhhhhhheeeecccCCCHHHHHHHHHHHHhc-cC--CcceEEEEEecccccccc-hhhHHHhhhhcCcchHHHHH
Confidence            2246778999999999975432222 11 2222322 22  247999999999976442 11111111100    11233


Q ss_pred             HHHHHcCCcEEEeeCCCccccccHH-HHHHHHHHHHHHH
Q 036158          171 EILQLCDNRCVLFDNKTKDTAKRTE-QVGKLLSLVNSVI  208 (225)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~~i~~~~  208 (225)
                      .+.+..+.. .++    .+||+++. +++++++.+.+.+
T Consensus       143 ~~a~~~~~~-~y~----E~SAk~~~n~i~~~F~~~~~~~  176 (179)
T d1m7ba_         143 NMAKQIGAA-TYI----ECSALQSENSVRDIFHVATLAC  176 (179)
T ss_dssp             HHHHHHTCS-EEE----ECBTTTBHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCC-eEE----EEeCCCCCcCHHHHHHHHHHHH
Confidence            444444431 112    24555556 5999998876654

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.56  E-value=4.9e-15  Score=108.77  Aligned_cols=169  Identities=11%  Similarity=0.002  Sum_probs=92.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKC   96 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~   96 (225)
                      ++..||+++|.+|||||||+|+|.+.......     .|.......+.+ ++..+.++|+++.......           
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------   73 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-----PTLHPTSEELTI-AGMTFTTFDLGGHIQARRV-----------   73 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-----------CCCCCSCEEEEE-TTEEEEEEEECC----CCG-----------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccee-----cccccceeEEEe-cccccccccccchhhhhhH-----------
Confidence            56799999999999999999999988753221     122222233444 6778999999997754321           


Q ss_pred             HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhh---cCCchHH--H
Q 036158           97 IGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGR---ECPKPLK--E  171 (225)
Q Consensus        97 ~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~---~~~~~~~--~  171 (225)
                      ........++++++++..+.......................|++++.||.|.....  ...+..+.   .......  .
T Consensus        74 ~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~--~~~~i~~~~~~~~~~~~~~~~  151 (186)
T d1f6ba_          74 WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI--SEERLREMFGLYGQTTGKGSV  151 (186)
T ss_dssp             GGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCC--CHHHHHHHHTCTTTCCCSSCC
T ss_pred             HhhhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccC--CHHHHHHHHhhcccchhhhhh
Confidence            123445679999999987443333222111111111112458999999999976543  22222111   0000000  0


Q ss_pred             HHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          172 ILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                      .......+.+   ...+.||.++.|+++++++|.+.
T Consensus       152 ~~~~~~~~~~---~~~~~SA~tg~Gi~e~~~~l~~~  184 (186)
T d1f6ba_         152 SLKELNARPL---EVFMCSVLKRQGYGEGFRWMAQY  184 (186)
T ss_dssp             CTTTCCSCCE---EEEECBTTTTBSHHHHHHHHHTT
T ss_pred             hHHHhhcCCC---EEEEEeCCCCCCHHHHHHHHHHh
Confidence            0000011111   13356888999999999998653

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.56  E-value=9.5e-15  Score=111.20  Aligned_cols=140  Identities=22%  Similarity=0.315  Sum_probs=83.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccc-----------------------------cccCCCCCceeEEEEEEEEeeC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAF-----------------------------KSKAGSSGVTKTCEMQRTMLKD   67 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~~~~~   67 (225)
                      +++++|+++|+.++|||||+.+|+.....                             .......+.|.......+++ +
T Consensus         1 kp~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~-~   79 (224)
T d1jnya3           1 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-K   79 (224)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-S
T ss_pred             CCccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEec-C
Confidence            35789999999999999999988632110                             01122345666666777788 7


Q ss_pred             CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCH-------HHHHHHHHHHHHhcccccccE
Q 036158           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSE-------EEGAAIHILESLFGKKISDYM  140 (225)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~  140 (225)
                      +..++|+||||+.++           ...+......+|++|+|+++.++...       ..++.+..... ++.   .++
T Consensus        80 ~~~i~iiDtPGH~df-----------~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~-~~~---~~i  144 (224)
T d1jnya3          80 KYFFTIIDAPGHRDF-----------VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGL---DQL  144 (224)
T ss_dssp             SCEEEECCCSSSTTH-----------HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTC---TTC
T ss_pred             CceeEEeeCCCcHHH-----------HHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHH-hCC---Cce
Confidence            899999999999865           23333456677999999999865322       22233333222 222   578


Q ss_pred             EEEEecCCCCCCC--cccHHHHhhhcCCchHHHHHHHcC
Q 036158          141 IVVFTGGDELEDN--DETLEDYLGRECPKPLKEILQLCD  177 (225)
Q Consensus       141 ~vv~~k~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  177 (225)
                      ++++||+|.....  ...++.....     +..++...+
T Consensus       145 Iv~iNK~D~~~~~~~~~~~~~v~~~-----i~~~~~~~~  178 (224)
T d1jnya3         145 IVAVNKMDLTEPPYDEKRYKEIVDQ-----VSKFMRSYG  178 (224)
T ss_dssp             EEEEECGGGSSSTTCHHHHHHHHHH-----HHHHHHHTT
T ss_pred             EEEEEcccCCCccccHHHHHHHHHH-----HHhHHHhcC
Confidence            9999999987543  1223333333     566666554

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=2.8e-13  Score=107.21  Aligned_cols=132  Identities=15%  Similarity=0.190  Sum_probs=78.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCC-ceeEEEEE-----------------------------------
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSG-VTKTCEMQ-----------------------------------   61 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~-~t~~~~~~-----------------------------------   61 (225)
                      ..++|+|+|..++|||||||+|+|.+..+++..+.. ..+...+.                                   
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence            457899999999999999999999886655432211 11111111                                   


Q ss_pred             -------------EEEeeCCceEEEEeCCCCCCCCCCc--HHHHHHHHHHHhhcCCCc-cEEEEEEeCCCCCCHHHHHHH
Q 036158           62 -------------RTMLKDGQVVNVIDTPGLFDSSADS--EFVSKEIVKCIGMTKDGI-HAVLVVFSVRNRFSEEEGAAI  125 (225)
Q Consensus        62 -------------~~~~~~~~~~~liDtPG~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~ii~v~~~~~~~~~~~~~~~  125 (225)
                                   .+..+.-.++.|+||||+.......  ......+...+..+.... +++++|.++...++..+  ..
T Consensus       105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~--~~  182 (299)
T d2akab1         105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD--AL  182 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCH--HH
T ss_pred             CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhH--HH
Confidence                         1122233469999999998654322  112222333333333334 56667777765555443  33


Q ss_pred             HHHHHHhcccccccEEEEEecCCCCCCC
Q 036158          126 HILESLFGKKISDYMIVVFTGGDELEDN  153 (225)
Q Consensus       126 ~~l~~~~~~~~~~~~~vv~~k~D~~~~~  153 (225)
                      ..+++.-+  ...++++|+||+|.....
T Consensus       183 ~~~~~~~~--~~~r~i~Vltk~D~~~~~  208 (299)
T d2akab1         183 KIAKEVDP--QGQRTIGVITKLDLMDEG  208 (299)
T ss_dssp             HHHHHHCT--TCSSEEEEEECGGGSCTT
T ss_pred             HHHHHhCc--CCCceeeEEeccccccch
Confidence            44444322  236899999999988664

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=5.2e-14  Score=112.74  Aligned_cols=117  Identities=19%  Similarity=0.253  Sum_probs=79.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcccc--------------ccCCCCCceeEEEEEEEEee---------------CCc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFK--------------SKAGSSGVTKTCEMQRTMLK---------------DGQ   69 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~---------------~~~   69 (225)
                      ..+|+|+|+.++|||||+.+|+......              ......+.|.......+.+.               ...
T Consensus        17 IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~   96 (341)
T d1n0ua2          17 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF   96 (341)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccce
Confidence            4569999999999999999997322110              01112334444444444331               234


Q ss_pred             eEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCC
Q 036158           70 VVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDE  149 (225)
Q Consensus        70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~  149 (225)
                      .++|+||||+.++.       .+....+.    -+|++++|+|+.++....+.+.++...+.     ..|+++++||+|.
T Consensus        97 ~inliDtPGh~dF~-------~ev~~al~----~~D~allVVda~eGv~~qT~~~~~~a~~~-----~~p~i~viNKiDr  160 (341)
T d1n0ua2          97 LINLIDSPGHVDFS-------SEVTAALR----VTDGALVVVDTIEGVCVQTETVLRQALGE-----RIKPVVVINKVDR  160 (341)
T ss_dssp             EEEEECCCCCCSSC-------HHHHHHHH----TCSEEEEEEETTTBSCHHHHHHHHHHHHT-----TCEEEEEEECHHH
T ss_pred             EEEEEcCCCcHHHH-------HHHHHHHh----hcCceEEEEecccCcchhHHHHHHHHHHc-----CCCeEEEEECccc
Confidence            69999999999884       23333333    45999999999889999998888777663     3799999999996


Q ss_pred             CC
Q 036158          150 LE  151 (225)
Q Consensus       150 ~~  151 (225)
                      ..
T Consensus       161 ~~  162 (341)
T d1n0ua2         161 AL  162 (341)
T ss_dssp             HH
T ss_pred             cc
Confidence            53

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.48  E-value=9e-14  Score=106.93  Aligned_cols=163  Identities=17%  Similarity=0.176  Sum_probs=88.8

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccc-----------------------------cccCCCCCceeEEEEEEEEee
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAF-----------------------------KSKAGSSGVTKTCEMQRTMLK   66 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~~~~   66 (225)
                      .+++++|+++|+.++|||||+.+|+.....                             .......+.|.......+.+ 
T Consensus        21 ~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~-   99 (245)
T d1r5ba3          21 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-   99 (245)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-
T ss_pred             CCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccc-
Confidence            356778999999999999999998521110                             00111234455555555666 


Q ss_pred             CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-------CHHHHHHHHHHHHHhccccccc
Q 036158           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRF-------SEEEGAAIHILESLFGKKISDY  139 (225)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~  139 (225)
                      .+.++.++||||+.++.           ..+......+|++++|+++.++.       ....++.+..+.. ++.   ++
T Consensus       100 ~~~~i~~iDtPGH~df~-----------~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~-~~i---~~  164 (245)
T d1r5ba3         100 EHRRFSLLDAPGHKGYV-----------TNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGI---NH  164 (245)
T ss_dssp             SSEEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTC---SS
T ss_pred             ccceeeeecccccccch-----------hhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH-cCC---Ce
Confidence            77899999999998763           22223455779999999997543       1234455544443 222   57


Q ss_pred             EEEEEecCCCCCCC--cccHHHHhhhcCCchHHHHHHHcCC-c---EEEeeCCCccccccHHHHHHHHH
Q 036158          140 MIVVFTGGDELEDN--DETLEDYLGRECPKPLKEILQLCDN-R---CVLFDNKTKDTAKRTEQVGKLLS  202 (225)
Q Consensus       140 ~~vv~~k~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~v~~l~~  202 (225)
                      +++++||+|.....  +..+++..++     +...+..... .   ...   ..+.||.++.++.++++
T Consensus       165 iiv~iNKmD~~~~~~~e~~~~ei~~~-----l~~~l~~i~~~~~~~~v~---~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         165 LVVVINKMDEPSVQWSEERYKECVDK-----LSMFLRRVAGYNSKTDVK---YMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             EEEEEECTTSTTCSSCHHHHHHHHHH-----HHHHHHHHHCCCHHHHEE---EEECBTTTTBTTSSCCC
T ss_pred             EEEEEEcCCCCccchhHHHHHHHHHH-----HHHHHHHHhCcCcccCCE---EEEeeccCCCCcccchh
Confidence            88999999986432  2234444444     4545444321 0   111   23456666777766544

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=5.5e-13  Score=99.04  Aligned_cols=113  Identities=16%  Similarity=0.137  Sum_probs=74.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      .++|+++|.+|||||||++++.    +..   ...+|.......+.. ....+.+|||+|...           ....+.
T Consensus         2 ~iKivllG~~~vGKTsll~r~~----f~~---~~~pTiG~~~~~~~~-~~~~~~~~D~~gq~~-----------~~~~~~   62 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR----IIH---GQDPTKGIHEYDFEI-KNVPFKMVDVGGQRS-----------ERKRWF   62 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH----HHH---SCCCCSSEEEEEEEE-TTEEEEEEEECC------------------CT
T ss_pred             eEEEEEECCCCCCHHHHHHHHh----cCC---CCCCeeeeEEEEEee-eeeeeeeecccceee-----------eccccc
Confidence            4799999999999999999993    222   122355566667777 788999999999642           334455


Q ss_pred             hcCCCccEEEEEEeCCCCCC--------HHHHHHHHHHHHHhcc--cccccEEEEEecCCCC
Q 036158           99 MTKDGIHAVLVVFSVRNRFS--------EEEGAAIHILESLFGK--KISDYMIVVFTGGDEL  150 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~--------~~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~  150 (225)
                      .+...+++++++++..+...        ....+.+.++...+..  ....|++++.||+|..
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~  124 (200)
T d1zcba2          63 ECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLL  124 (200)
T ss_dssp             TSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred             ccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhh
Confidence            67888999999998863221        1122334444444332  1347999999999965

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=3.4e-13  Score=99.64  Aligned_cols=163  Identities=16%  Similarity=0.163  Sum_probs=97.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      .++|+++|..|+|||||++++......         |.......+.. ....+.+|||.|...           +...+.
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~---------t~~~~~~~~~~-~~~~~~i~D~~Gq~~-----------~~~~~~   60 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEA---------GTGIVETHFTF-KDLHFKMFDVGGQRS-----------ERKKWI   60 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSC---------CCSEEEEEEEE-TTEEEEEEEECCSGG-----------GGGGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCC---------CccEEEEEEEe-eeeeeeeeccccccc-----------cccchh
Confidence            579999999999999999998744321         11222344555 778999999999653           345556


Q ss_pred             hcCCCccEEEEEEeCCCCCCH--------HHHHHHHHHHHHhcc--cccccEEEEEecCCCCCCC---------------
Q 036158           99 MTKDGIHAVLVVFSVRNRFSE--------EEGAAIHILESLFGK--KISDYMIVVFTGGDELEDN---------------  153 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~~~~--------~~~~~~~~l~~~~~~--~~~~~~~vv~~k~D~~~~~---------------  153 (225)
                      .++..++++++|++..+..+.        ...+....+......  ....|++++.||+|.....               
T Consensus        61 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~  140 (195)
T d1svsa1          61 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAG  140 (195)
T ss_dssp             GGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCS
T ss_pred             hcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcC
Confidence            788899999999988632211        112222333332222  1236999999999853210               


Q ss_pred             cccHHHHhhhcCCchHHHHHHH----cCC-cEEEeeCCCccccccHHHHHHHHHHHHHHHHHc
Q 036158          154 DETLEDYLGRECPKPLKEILQL----CDN-RCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQN  211 (225)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~  211 (225)
                      .....+....     ....+..    ... +++.+.    +||..+.+|+++++.+.+++.++
T Consensus       141 ~~~~~~~~~~-----~~~~f~~~~~~~~~~~~~~~~----tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         141 SNTYEEAAAY-----IQCQFEDLNKRKDTKEIYTHF----TCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             CSSHHHHHHH-----HHHHHHTTCSCTTTCCEEEEE----CCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHH-----HHHHHHHHhcccCCCcceeEE----EEeECCHhHHHHHHHHHHHHHhc
Confidence            0011111000     1111111    222 233332    46777899999999999887664

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.45  E-value=5e-13  Score=106.13  Aligned_cols=133  Identities=16%  Similarity=0.204  Sum_probs=72.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCc-eeEE-------------------------------------
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGV-TKTC-------------------------------------   58 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~-t~~~-------------------------------------   58 (225)
                      -.-++|+|+|..++|||||||+|+|....+++..+.+. .+..                                     
T Consensus        22 ~~lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (306)
T d1jwyb_          22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE  101 (306)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHH
Confidence            34578999999999999999999998865443221100 0000                                     


Q ss_pred             -------------------EEEEEEeeCCceEEEEeCCCCCCCCCCc--HHHHHHHHHHHhhcCCCccEEEE-EEeCCCC
Q 036158           59 -------------------EMQRTMLKDGQVVNVIDTPGLFDSSADS--EFVSKEIVKCIGMTKDGIHAVLV-VFSVRNR  116 (225)
Q Consensus        59 -------------------~~~~~~~~~~~~~~liDtPG~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ii~-v~~~~~~  116 (225)
                                         ....+..+.-..+.||||||+.......  ......+...+..+...++.+++ |.+....
T Consensus       102 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~  181 (306)
T d1jwyb_         102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD  181 (306)
T ss_dssp             HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred             HHHHHHHhcCCCCcccccceEEEecCCCCCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeeccccc
Confidence                               0111222234479999999998654221  11222233333444445576444 4565533


Q ss_pred             CCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCC
Q 036158          117 FSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDN  153 (225)
Q Consensus       117 ~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~  153 (225)
                      .....  .+..+++.-+  ...++++|+||+|.....
T Consensus       182 ~~~~~--~~~~~~~~~~--~~~r~i~Vitk~D~~~~~  214 (306)
T d1jwyb_         182 LANSD--ALQLAKEVDP--EGKRTIGVITKLDLMDKG  214 (306)
T ss_dssp             STTCS--HHHHHHHHCS--SCSSEEEEEECTTSSCSS
T ss_pred             ccccH--HHHHHHHhCc--CCCeEEEEEeccccccch
Confidence            33322  3344444322  236899999999987554

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=1.8e-12  Score=96.05  Aligned_cols=173  Identities=14%  Similarity=0.128  Sum_probs=102.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      +.++|+++|..|||||||++++..... .     ..+|.......+.. ....+.+|||+|....           ...+
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~-~-----~~pTiG~~~~~~~~-~~~~~~~~d~~g~~~~-----------~~~~   62 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHG-S-----GVPTTGIIEYPFDL-QSVIFRMVDVGGQRSE-----------RRKW   62 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTS-S-----CCCCCSCEEEEEEC-SSCEEEEEECCCSTTG-----------GGGG
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCC-C-----CCceeeEEEEEEec-cceeeeeccccccccc-----------cccc
Confidence            358999999999999999999975542 1     12344455555666 7789999999997643           3344


Q ss_pred             hhcCCCccEEEEEEeCCCCCC--------HHHHHHHHHHHHHhccc--ccccEEEEEecCCCCCCC--cccHHHHhhhcC
Q 036158           98 GMTKDGIHAVLVVFSVRNRFS--------EEEGAAIHILESLFGKK--ISDYMIVVFTGGDELEDN--DETLEDYLGREC  165 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~~--------~~~~~~~~~l~~~~~~~--~~~~~~vv~~k~D~~~~~--~~~~~~~~~~~~  165 (225)
                      ..+...+++++++++..+...        ....+.++.+.......  ...|++++.||.|..+..  ......+.....
T Consensus        63 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~  142 (200)
T d2bcjq2          63 IHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYD  142 (200)
T ss_dssp             GGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCC
T ss_pred             cccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhccccc
Confidence            467789999999998863211        11122233333333222  347999999999865221  011222111100


Q ss_pred             ---------CchHHHHHHH----cCCcEEEeeCCCccccccHHHHHHHHHHHHHHHHHcC
Q 036158          166 ---------PKPLKEILQL----CDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSVIVQNG  212 (225)
Q Consensus       166 ---------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~~~~~  212 (225)
                               ..........    .+..++.+.    +||+.+.+++++++.|.+++.+++
T Consensus       143 ~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~----tSAk~~~ni~~vF~~i~~~I~~~n  198 (200)
T d2bcjq2         143 GPQRDAQAAREFILKMFVDLNPDSDKIIYSHF----TCATDTENIRFVFAAVKDTILQLN  198 (200)
T ss_dssp             SCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEE----CCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHHHHHHhcccCCCceEEEE----eEEEcCHhHHHHHHHHHHHHHHHh
Confidence                     0001111111    122333333    367788999999999998887653

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.26  E-value=2.5e-12  Score=101.53  Aligned_cols=92  Identities=17%  Similarity=0.152  Sum_probs=71.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCC----------------ceEEEEeCCCCCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDG----------------QVVNVIDTPGLFD   81 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~liDtPG~~~   81 (225)
                      ..++|+++|.||||||||+|+|++...... ..++.+|.++....+..++.                ..+.++|.||+..
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~-anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNP-ANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTST-TCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCc-CCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            348999999999999999999997654333 45788888887777776432                2689999999998


Q ss_pred             CCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 036158           82 SSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVR  114 (225)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~  114 (225)
                      .......+..++...+..    +|++++|+++.
T Consensus        88 gA~~g~GLGn~fL~~ir~----~d~lihVV~~f  116 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVRA----VDAIYQVVRAF  116 (296)
T ss_dssp             CCCSSSSSCHHHHHHHTT----CSEEEEEEECC
T ss_pred             ccccccccHHHHHHHhhc----cceeEEEEecc
Confidence            776666666667666544    49999999874

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.23  E-value=2.3e-12  Score=102.76  Aligned_cols=89  Identities=16%  Similarity=0.089  Sum_probs=45.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEE-ee----------------------CCceEEEEeC
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTM-LK----------------------DGQVVNVIDT   76 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~----------------------~~~~~~liDt   76 (225)
                      ++|+++|.||+|||||+|+|++.++  ....++.+|.++...... .+                      ....+.++|+
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~--~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~   78 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDV--EIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV   78 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCC--chhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEEC
Confidence            4799999999999999999999875  334466666655433221 00                      1135999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 036158           77 PGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVR  114 (225)
Q Consensus        77 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~  114 (225)
                      ||+...........    .........+|++++|+|+.
T Consensus        79 pGli~ga~~g~~~~----~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          79 AGLVPGAHEGRGLG----NKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             C-------------------CCCSSTTCSEEEEEEETT
T ss_pred             CCcccchhcccchH----HHHHHhhccceEEEEEeccc
Confidence            99986543333222    33334556889999999974

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.22  E-value=3.5e-11  Score=90.89  Aligned_cols=113  Identities=16%  Similarity=0.191  Sum_probs=78.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHHh
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCIG   98 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~   98 (225)
                      ..+|+++|..|+|||||++.+.....        .+|.......+.+ ++..+.++|+.|....           +..+.
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~~~~--------~pTiG~~~~~~~~-~~~~~~~~D~~Gq~~~-----------r~~w~   65 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRILHV--------VLTSGIFETKFQV-DKVNFHMFDVGGQRDE-----------RRKWI   65 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHC--------CCCCSCEEEEEEE-TTEEEEEEECCCSTTT-----------TTGGG
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCCc--------CCCCCeEEEEEEE-CcEEEEEEecCcccee-----------ccchh
Confidence            47899999999999999999863321        1233344555666 7889999999997633           33445


Q ss_pred             hcCCCccEEEEEEeCCCC--------CCHHHHHHHHHHHHHhccc--ccccEEEEEecCCCCC
Q 036158           99 MTKDGIHAVLVVFSVRNR--------FSEEEGAAIHILESLFGKK--ISDYMIVVFTGGDELE  151 (225)
Q Consensus        99 ~~~~~~~~ii~v~~~~~~--------~~~~~~~~~~~l~~~~~~~--~~~~~~vv~~k~D~~~  151 (225)
                      .+...++++++|++..+.        -.....+.++.+...+...  ...|+++++||+|+.+
T Consensus        66 ~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~  128 (221)
T d1azta2          66 QCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLA  128 (221)
T ss_dssp             GGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHH
T ss_pred             hhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhh
Confidence            677899999999998621        1112234445555555443  3469999999999753

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.22  E-value=1.7e-12  Score=101.65  Aligned_cols=88  Identities=19%  Similarity=0.161  Sum_probs=64.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCc----------------eEEEEeCCCCCCCC
Q 036158           20 RNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQ----------------VVNVIDTPGLFDSS   83 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~----------------~~~liDtPG~~~~~   83 (225)
                      ++|+++|.+|+|||||+|+|++..+  ....++.+|.++....+.+++.+                .+.++|.||+...+
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~--~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga   80 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGI--EAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCC--ccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCc
Confidence            6899999999999999999998775  33456778878777777664331                48899999998765


Q ss_pred             CCcHHHHHHHHHHHhhcCCCccEEEEEEeC
Q 036158           84 ADSEFVSKEIVKCIGMTKDGIHAVLVVFSV  113 (225)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~  113 (225)
                      .....+..++.+.+..+    |+++.|+|.
T Consensus        81 ~~g~Glg~~FL~~ir~~----d~LihVVr~  106 (278)
T d1jala1          81 SKGEGLGNKFLANIRET----DAIGHVVRC  106 (278)
T ss_dssp             HHHGGGTCCHHHHHHTC----SEEEEEEEC
T ss_pred             ccCCCccHHHHHHHHhc----cceEEEeec
Confidence            44455566666666555    999999976

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.20  E-value=1.2e-11  Score=94.28  Aligned_cols=126  Identities=14%  Similarity=0.047  Sum_probs=64.2

Q ss_pred             eEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCC
Q 036158           70 VVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDE  149 (225)
Q Consensus        70 ~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~  149 (225)
                      .+.++||||+.+..     ........+. .....+.+++++|+.........................|.++|+||+|.
T Consensus        96 ~~~~id~~g~~~~~-----~~~~~~~~~~-~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D~  169 (244)
T d1yrba1          96 DYVLIDTPGQMETF-----LFHEFGVRLM-ENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDL  169 (244)
T ss_dssp             SEEEEECCSSHHHH-----HHSHHHHHHH-HTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGG
T ss_pred             ceeeeccccchhHH-----HHHHHHHHHH-hhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeecccc
Confidence            59999999986431     0101111111 12245788999998644444433222222211112234789999999998


Q ss_pred             CCCCcccHHHHh---hh---------cCCch-------HHHHHHHcCCcEEEeeCCCccccccHHHHHHHHHHHHHH
Q 036158          150 LEDNDETLEDYL---GR---------ECPKP-------LKEILQLCDNRCVLFDNKTKDTAKRTEQVGKLLSLVNSV  207 (225)
Q Consensus       150 ~~~~~~~~~~~~---~~---------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~  207 (225)
                      ....  ......   +.         .....       +...++.....    -...+.|+.++.++++|+..|.++
T Consensus       170 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         170 LSEE--EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPP----VRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             CCHH--HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCC----CCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccHH--HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCC----CcEEEEECCCCCCHHHHHHHHHHH
Confidence            8653  111110   00         00000       11111121111    123456778889999999999876

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=99.15  E-value=4.3e-11  Score=93.22  Aligned_cols=71  Identities=23%  Similarity=0.346  Sum_probs=46.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHH
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSK   91 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~   91 (225)
                      ....++|+|+|.+|+|||||+|+|.+.....++ ..+++|+..+..  .  .+..+.++||||+.-......+...
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~-~~pG~Tr~~~~i--~--~~~~~~l~DTPGi~~p~~~~~~~~~  179 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTG-DRPGITTSQQWV--K--VGKELELLDTPGILWPKFEDELVGL  179 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCE--E--ETTTEEEEECCCCCCSCCCCHHHHH
T ss_pred             CCCceEEEEEecCccchhhhhhhhhccceEEEC-CcccccccceEE--E--CCCCeEEecCCCccccCCccHHHHh
Confidence            456789999999999999999999999876654 467778765433  2  3667999999999866555554443

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.98  E-value=1.6e-10  Score=86.68  Aligned_cols=61  Identities=25%  Similarity=0.298  Sum_probs=40.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccC------CCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCC
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKA------GSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS   83 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~   83 (225)
                      ....+++|++|+|||||||+|.+.....+..      ....+|+..+.+.+.  ++  -.|+||||+.++.
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~--~g--g~iiDTPG~r~~~  161 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFD--FG--GYVVDTPGFANLE  161 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECT--TS--CEEESSCSSTTCC
T ss_pred             CCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEEC--CC--cEEEeCCcccccc
Confidence            4578999999999999999999875433321      123355555555442  22  4799999998765

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=2.4e-10  Score=90.85  Aligned_cols=24  Identities=25%  Similarity=0.306  Sum_probs=22.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHh
Q 036158           17 NGERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      ...++|+|.|++|+|||||+++|.
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~   75 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFG   75 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHH
Confidence            457999999999999999999996

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.85  E-value=8.8e-09  Score=76.58  Aligned_cols=96  Identities=15%  Similarity=0.119  Sum_probs=56.6

Q ss_pred             CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc----CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEE
Q 036158           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT----KDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVV  143 (225)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv  143 (225)
                      +..++||||||....   +.+...++.......    ...++-+++|+++...  .   ..+..+...|..  ...--++
T Consensus        93 ~~d~ilIDTaGr~~~---d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~---~~~~~~~~~~~~--~~~~~lI  162 (213)
T d1vmaa2          93 NKDVVIIDTAGRLHT---KKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--Q---NGLVQAKIFKEA--VNVTGII  162 (213)
T ss_dssp             TCSEEEEEECCCCSC---HHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--H---HHHHHHHHHHHH--SCCCEEE
T ss_pred             CCCEEEEeccccccc---hHHHHHHHHHHHhhhhhccccccceeEEeeccccC--c---chhhhhhhhccc--cCCceEE
Confidence            456899999997533   444455554444322    1246889999998622  2   233333333322  1466789


Q ss_pred             EecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCC
Q 036158          144 FTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK  186 (225)
Q Consensus       144 ~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (225)
                      +||.|.....             -.+-.+...++.++.++.+-
T Consensus       163 ~TKlDe~~~~-------------G~~l~~~~~~~~Pi~~i~~G  192 (213)
T d1vmaa2         163 LTKLDGTAKG-------------GITLAIARELGIPIKFIGVG  192 (213)
T ss_dssp             EECGGGCSCT-------------THHHHHHHHHCCCEEEEECS
T ss_pred             EecccCCCcc-------------cHHHHHHHHHCCCEEEEeCC
Confidence            9999965432             11445666778887777654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.84  E-value=4.8e-10  Score=84.23  Aligned_cols=60  Identities=27%  Similarity=0.403  Sum_probs=36.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCccccccCC------CCCceeEEEEEEEEeeCCceEEEEeCCCCCCCC
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRAFKSKAG------SSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSS   83 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~   83 (225)
                      ....+++|++|+|||||||+|++.....+...      ...+|+....+.  . ++  -.|+||||+.++.
T Consensus        97 ~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~--~-~g--g~iiDTPG~r~~~  162 (231)
T d1t9ha2          97 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIH--T-SG--GLVADTPGFSSLE  162 (231)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEE--E-TT--EEEESSCSCSSCC
T ss_pred             cceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEe--c-CC--CEEEECCcccccc
Confidence            35678999999999999999998754332211      222455554443  3 43  3588999998764

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.71  E-value=2.5e-08  Score=73.74  Aligned_cols=96  Identities=15%  Similarity=0.120  Sum_probs=55.3

Q ss_pred             CceEEEEeCCCCCCCCCCcHHHHHHHHH---HHhh-cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEE
Q 036158           68 GQVVNVIDTPGLFDSSADSEFVSKEIVK---CIGM-TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVV  143 (225)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv  143 (225)
                      +..++||||||....   +....+++..   .+.. ....++-++||+++...  .++...+....+.+     .+--++
T Consensus        88 ~~d~ilIDTaGr~~~---d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~-----~~~~lI  157 (207)
T d1okkd2          88 GYDLLFVDTAGRLHT---KHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG--QNGLEQAKKFHEAV-----GLTGVI  157 (207)
T ss_dssp             TCSEEEECCCCCCTT---CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBC--THHHHHHHHHHHHH-----CCSEEE
T ss_pred             CCCEEEcCccccchh---hHHHHHHHHHHHHHhhhcccCCCceEEEEeecccC--chHHHHHHHhhhcc-----CCceEE
Confidence            346899999997643   2333333333   2222 22367889999998633  23333332232222     455789


Q ss_pred             EecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCC
Q 036158          144 FTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK  186 (225)
Q Consensus       144 ~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (225)
                      +||.|......             .+-+....++.++.++.+-
T Consensus       158 ~TKlDet~~~G-------------~~l~~~~~~~~Pi~~i~~G  187 (207)
T d1okkd2         158 VTKLDGTAKGG-------------VLIPIVRTLKVPIKFVGVG  187 (207)
T ss_dssp             EECTTSSCCCT-------------THHHHHHHHCCCEEEEECS
T ss_pred             EeccCCCCCcc-------------HHHHHHHHHCCCEEEEeCC
Confidence            99999654321             1455666778777766553

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.69  E-value=2.4e-09  Score=84.89  Aligned_cols=113  Identities=12%  Similarity=0.067  Sum_probs=59.5

Q ss_pred             CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHH-HHHHHHhcccccccEEEEEec
Q 036158           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAI-HILESLFGKKISDYMIVVFTG  146 (225)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~vv~~k  146 (225)
                      +..+.|+.|.|.+...       ..       ....+|.+++|+....+   ++.+.+ .-+.+       ..=++|+||
T Consensus       143 g~d~iiiETVG~gq~e-------~~-------~~~~~D~~v~v~~p~~G---D~iQ~~k~gilE-------~aDi~vvNK  198 (323)
T d2qm8a1         143 GFDVILVETVGVGQSE-------TA-------VADLTDFFLVLMLPGAG---DELQGIKKGIFE-------LADMIAVNK  198 (323)
T ss_dssp             TCCEEEEEECSSSSCH-------HH-------HHTTSSEEEEEECSCC---------CCTTHHH-------HCSEEEEEC
T ss_pred             CCCeEEEeehhhhhhh-------hh-------hhcccceEEEEeeccch---hhhhhhhhhHhh-------hhheeeEec
Confidence            3468889999877431       11       12356999999877522   232222 12222       355999999


Q ss_pred             CCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEE-EeeCCCccccccHHHHHHHHHHHHHHHHH
Q 036158          147 GDELEDNDETLEDYLGRECPKPLKEILQLCDNRCV-LFDNKTKDTAKRTEQVGKLLSLVNSVIVQ  210 (225)
Q Consensus       147 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~l~~~i~~~~~~  210 (225)
                      +|..... .........     ++..+.......- ........|+.++.++++|.+.|.++...
T Consensus       199 aD~~~~~-~~~~~~~~~-----~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~  257 (323)
T d2qm8a1         199 ADDGDGE-RRASAAASE-----YRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSK  257 (323)
T ss_dssp             CSTTCCH-HHHHHHHHH-----HHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cccccch-HHHHHHHHH-----HHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence            9966442 122222111     2222221111000 01122345667789999999999887654

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=1.9e-08  Score=74.53  Aligned_cols=96  Identities=10%  Similarity=0.123  Sum_probs=55.2

Q ss_pred             CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhc---C-CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEE
Q 036158           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMT---K-DGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVV  143 (225)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv  143 (225)
                      +..++||||||....   +....+++.......   . ..++-+++|+++...  ..+........+.+     ..--++
T Consensus        91 ~~d~ilIDTaGr~~~---d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~-----~~~~lI  160 (211)
T d2qy9a2          91 NIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAV-----GLTGIT  160 (211)
T ss_dssp             TCSEEEECCCCCGGG---HHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHHHHS-----CCCEEE
T ss_pred             CCCEEEeccCCCccc---cHHHHHHHHHHHHHHhhhcccCcceeeeehhcccC--cchHHHHhhhhhcc-----CCceEE
Confidence            346899999996522   334444544443221   1 236789999998632  33322222222221     456789


Q ss_pred             EecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCC
Q 036158          144 FTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK  186 (225)
Q Consensus       144 ~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (225)
                      +||.|.....             -.+-.+...++.++.++.+-
T Consensus       161 lTKlDe~~~~-------------G~~l~~~~~~~~Pi~~i~~G  190 (211)
T d2qy9a2         161 LTKLDGTAKG-------------GVIFSVADQFGIPIRYIGVG  190 (211)
T ss_dssp             EECCTTCTTT-------------THHHHHHHHHCCCEEEEECS
T ss_pred             EeecCCCCCc-------------cHHHHHHHHHCCCEEEEeCC
Confidence            9999965432             11455666778887777654

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.64  E-value=6.5e-08  Score=71.68  Aligned_cols=97  Identities=8%  Similarity=0.030  Sum_probs=53.7

Q ss_pred             CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEec
Q 036158           67 DGQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTG  146 (225)
Q Consensus        67 ~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k  146 (225)
                      .+..++||||||..... .......++.......  .++-+++|+++....  +.........+.+     ..--+++||
T Consensus        93 ~~~d~IlIDTaGr~~~~-~~~~~~~el~~~~~~~--~~~~~~LVl~a~~~~--~~~~~~~~~~~~~-----~~~~lI~TK  162 (211)
T d1j8yf2          93 EKMEIIIVDTAGRHGYG-EEAALLEEMKNIYEAI--KPDEVTLVIDASIGQ--KAYDLASKFNQAS-----KIGTIIITK  162 (211)
T ss_dssp             TTCSEEEEECCCSCCTT-CHHHHHHHHHHHHHHH--CCSEEEEEEEGGGGG--GHHHHHHHHHHHC-----TTEEEEEEC
T ss_pred             cCCceEEEecCCcCccc-hhhHHHHHHHHHHhhc--CCceEEEEEecccCc--chHHHHhhhhccc-----CcceEEEec
Confidence            44579999999975321 1122233343333222  457899999986332  2323332222222     344578999


Q ss_pred             CCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEeeCC
Q 036158          147 GDELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFDNK  186 (225)
Q Consensus       147 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (225)
                      .|.....    -.         +-++...++.+..++.+-
T Consensus       163 lDet~~~----G~---------~l~~~~~~~lPi~~it~G  189 (211)
T d1j8yf2         163 MDGTAKG----GG---------ALSAVAATGATIKFIGTG  189 (211)
T ss_dssp             TTSCSCH----HH---------HHHHHHTTTCCEEEEECS
T ss_pred             ccCCCcc----cH---------HHHHHHHHCcCEEEEeCC
Confidence            9965431    11         345566677777776654

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.55  E-value=1.1e-07  Score=70.20  Aligned_cols=92  Identities=14%  Similarity=0.123  Sum_probs=55.5

Q ss_pred             CceEEEEeCCCCCCCCCCcHHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecC
Q 036158           68 GQVVNVIDTPGLFDSSADSEFVSKEIVKCIGMTKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGG  147 (225)
Q Consensus        68 ~~~~~liDtPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~  147 (225)
                      +..++||||||....   +.....++.......  .++-+++|+++...  .+.......+.+.+     ..--+++||.
T Consensus        92 ~~d~vlIDTaGr~~~---d~~~~~el~~~~~~~--~~~~~llv~~a~~~--~~~~~~~~~f~~~~-----~~~~~I~TKl  159 (207)
T d1ls1a2          92 ARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--QEALSVARAFDEKV-----GVTGLVLTKL  159 (207)
T ss_dssp             TCCEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--HHHHHHHHHHHHHT-----CCCEEEEECG
T ss_pred             cCcceeecccccchh---hhhhHHHHHHHHhhc--CCceEEEEeccccc--hhHHHHHHHHHhhC-----CCCeeEEeec
Confidence            346899999997633   445555665554333  56889999998633  33334444443332     3456899999


Q ss_pred             CCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEEEee
Q 036158          148 DELEDNDETLEDYLGRECPKPLKEILQLCDNRCVLFD  184 (225)
Q Consensus       148 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (225)
                      |.....             -.+-.+...++.++.++.
T Consensus       160 De~~~~-------------G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         160 DGDARG-------------GAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             GGCSSC-------------HHHHHHHHHHCCCEEEEC
T ss_pred             Cccccc-------------hHHHHHHHHHCCCEEEEe
Confidence            964432             113445566677765554

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=4.7e-07  Score=69.86  Aligned_cols=67  Identities=28%  Similarity=0.294  Sum_probs=48.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCc-cccccCCCCCceeEEEEEEEEe--eCCceEEEEeCCCCCCCC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKR-AFKSKAGSSGVTKTCEMQRTML--KDGQVVNVIDTPGLFDSS   83 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~-~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~liDtPG~~~~~   83 (225)
                      .+...|+|+|+.++|||+|+|.|++.. .+.......++|...-......  ..+..+.++||.|+.+..
T Consensus        30 ~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~~   99 (277)
T d1f5na2          30 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE   99 (277)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccccc
Confidence            346789999999999999999999866 3444444455666665544433  234579999999998754

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.06  E-value=1.4e-05  Score=56.82  Aligned_cols=24  Identities=21%  Similarity=0.506  Sum_probs=21.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           20 RNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      ++|+++|++|+|||||++.|.+.-
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~l   24 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhcC
Confidence            479999999999999999998754

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.87  E-value=2.7e-05  Score=57.77  Aligned_cols=26  Identities=31%  Similarity=0.369  Sum_probs=22.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ++.+.++|.|.-|||||||+|.++..
T Consensus         1 ~~iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           1 NPIAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             CCEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCCCEEEEeeCCCCCHHHHHHHHHhc
Confidence            35688999999999999999999864

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.64  E-value=1.3e-05  Score=56.42  Aligned_cols=22  Identities=18%  Similarity=0.367  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      +.|+|+|.+|||||||++.|..
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            5799999999999999999984

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.54  E-value=9.6e-05  Score=56.46  Aligned_cols=68  Identities=16%  Similarity=0.171  Sum_probs=45.0

Q ss_pred             cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCc
Q 036158          100 TKDGIHAVLVVFSVRNRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNR  179 (225)
Q Consensus       100 ~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (225)
                      ....+|+||+|+|+..+++..+..+.+.++       .+|.++|+||+|+.+..  ..+    .     |.+.++.-+..
T Consensus        12 ~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~-------~Kp~IlVlNK~DLv~~~--~~~----~-----w~~~f~~~~~~   73 (273)
T d1puja_          12 KLKLIDIVYELVDARIPMSSRNPMIEDILK-------NKPRIMLLNKADKADAA--VTQ----Q-----WKEHFENQGIR   73 (273)
T ss_dssp             HGGGCSEEEEEEETTSTTTTSCHHHHHHCS-------SSCEEEEEECGGGSCHH--HHH----H-----HHHHHHTTTCC
T ss_pred             HHHhCCEEEEEEECCCCCCCCCHHHHHHHc-------CCCeEEEEECccCCchH--HHH----H-----HHHHHHhcCCc
Confidence            344669999999998788877755544443       27999999999987552  222    2     44555554555


Q ss_pred             EEEeeC
Q 036158          180 CVLFDN  185 (225)
Q Consensus       180 ~~~~~~  185 (225)
                      ...++.
T Consensus        74 ~i~isa   79 (273)
T d1puja_          74 SLSINS   79 (273)
T ss_dssp             EEECCT
T ss_pred             cceeec
Confidence            554443

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.51  E-value=2.4e-05  Score=58.78  Aligned_cols=27  Identities=30%  Similarity=0.353  Sum_probs=23.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      +.-.|+|+|++|||||||++.|.|...
T Consensus        28 ~Ge~vaIvG~sGsGKSTLl~ll~gl~~   54 (241)
T d2pmka1          28 QGEVIGIVGRSGSGKSTLTKLIQRFYI   54 (241)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            346799999999999999999998764

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.47  E-value=3.8e-05  Score=54.07  Aligned_cols=25  Identities=28%  Similarity=0.489  Sum_probs=22.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .+..+|+|+|++||||||+.+.|..
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            4568999999999999999999864

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.45  E-value=2.5e-05  Score=55.42  Aligned_cols=24  Identities=21%  Similarity=0.441  Sum_probs=21.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           19 ERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ..+|+|+|++|||||||++.|...
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            368999999999999999999743

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.44  E-value=3.1e-05  Score=58.56  Aligned_cols=27  Identities=37%  Similarity=0.519  Sum_probs=23.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      +.-.++|+|++|||||||++.|+|...
T Consensus        40 ~Ge~iaivG~sGsGKSTLl~ll~gl~~   66 (253)
T d3b60a1          40 AGKTVALVGRSGSGKSTIASLITRFYD   66 (253)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcccC
Confidence            345799999999999999999998664

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.42  E-value=6e-05  Score=56.57  Aligned_cols=28  Identities=18%  Similarity=0.221  Sum_probs=24.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .+.-.++|+|++|||||||++.|.|...
T Consensus        26 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~   53 (242)
T d1mv5a_          26 QPNSIIAFAGPSGGGKSTIFSLLERFYQ   53 (242)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence            4456899999999999999999998764

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.42  E-value=4.1e-05  Score=56.92  Aligned_cols=26  Identities=27%  Similarity=0.309  Sum_probs=22.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .=.++++|++|||||||++.|.|-..
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~gl~~   56 (230)
T d1l2ta_          31 GEFVSIMGPSGSGKSTMLNIIGCLDK   56 (230)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCcchhhHhccCCCC
Confidence            45689999999999999999998764

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=4.3e-05  Score=56.87  Aligned_cols=26  Identities=35%  Similarity=0.468  Sum_probs=22.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .=.++++|++|||||||++.|.|...
T Consensus        26 Gei~~liGpsGsGKSTLl~~i~Gl~~   51 (232)
T d2awna2          26 GEFVVFVGPSGCGKSTLLRMIAGLET   51 (232)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCCC
Confidence            35689999999999999999998764

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.41  E-value=3.5e-05  Score=54.15  Aligned_cols=22  Identities=27%  Similarity=0.505  Sum_probs=20.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 036158           19 ERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      .++|+|+|++||||||+.+.|.
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La   25 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELA   25 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            4789999999999999999985

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.40  E-value=3.8e-05  Score=55.99  Aligned_cols=26  Identities=19%  Similarity=0.190  Sum_probs=22.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .-.++|+|++|||||||++.|.|...
T Consensus        27 Gei~~l~G~NGsGKSTLl~~i~gl~~   52 (200)
T d1sgwa_          27 GNVVNFHGPNGIGKTTLLKTISTYLK   52 (200)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCChHHHHHHHHhcccc
Confidence            34688999999999999999998653

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.37  E-value=4.2e-05  Score=58.74  Aligned_cols=27  Identities=33%  Similarity=0.480  Sum_probs=23.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      +.-.++|+|++|||||||++.|+|...
T Consensus        61 ~Ge~vaivG~nGsGKSTLl~~i~Gl~~   87 (281)
T d1r0wa_          61 KGEMLAITGSTGSGKTSLLMLILGELE   87 (281)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCCc
Confidence            345689999999999999999998664

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=5.4e-05  Score=57.13  Aligned_cols=28  Identities=29%  Similarity=0.312  Sum_probs=24.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .+.-.++|+|++|||||||++.|.|...
T Consensus        38 ~~Ge~vaivG~sGsGKSTLl~li~gl~~   65 (251)
T d1jj7a_          38 RPGEVTALVGPNGSGKSTVAALLQNLYQ   65 (251)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcccC
Confidence            3456799999999999999999998764

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.33  E-value=6.1e-05  Score=56.26  Aligned_cols=26  Identities=38%  Similarity=0.533  Sum_probs=22.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .-.++++|++|||||||++.|.|...
T Consensus        32 Ge~~~liGpsGaGKSTLl~~i~Gl~~   57 (239)
T d1v43a3          32 GEFLVLLGPSGCGKTTTLRMIAGLEE   57 (239)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCCC
Confidence            34689999999999999999998764

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.30  E-value=6.3e-05  Score=56.25  Aligned_cols=26  Identities=31%  Similarity=0.514  Sum_probs=22.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .=.++++|++|||||||++.|.|...
T Consensus        29 Ge~~~liG~sGaGKSTll~~i~gl~~   54 (240)
T d1g2912          29 GEFMILLGPSGCGKTTTLRMIAGLEE   54 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCCC
Confidence            34689999999999999999998764

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=6.2e-05  Score=56.27  Aligned_cols=26  Identities=19%  Similarity=0.227  Sum_probs=22.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .-.++++|++|||||||++.|.|...
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~Gl~~   56 (240)
T d3dhwc1          31 GQIYGVIGASGAGKSTLIRCVNLLER   56 (240)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCcc
Confidence            35689999999999999999998763

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.28  E-value=6.8e-05  Score=55.99  Aligned_cols=24  Identities=42%  Similarity=0.462  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           21 NLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .++++|++|||||||++.|.|...
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~~   49 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCC
Confidence            567999999999999999998764

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.27  E-value=7.6e-05  Score=55.91  Aligned_cols=26  Identities=31%  Similarity=0.507  Sum_probs=22.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .=.++++|++|+|||||++.|.|...
T Consensus        32 Gei~~liGpnGaGKSTl~~~i~Gl~~   57 (240)
T d1ji0a_          32 GQIVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            34689999999999999999999764

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=2.9e-05  Score=55.57  Aligned_cols=23  Identities=35%  Similarity=0.648  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCCc
Q 036158           21 NLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      -|+|+|++|+||+||++.|+...
T Consensus         5 ~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           5 TLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHC
T ss_pred             cEEEECCCCCCHHHHHHHHHHhC
Confidence            38889999999999999998543

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.25  E-value=4.5e-05  Score=56.64  Aligned_cols=27  Identities=30%  Similarity=0.438  Sum_probs=23.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      +.=.++++|++|||||||++.|.|-..
T Consensus        25 ~Ge~~~liGpsGaGKSTll~~l~Gl~~   51 (229)
T d3d31a2          25 SGEYFVILGPTGAGKTLFLELIAGFHV   51 (229)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence            334689999999999999999998764

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=0.001  Score=50.29  Aligned_cols=102  Identities=15%  Similarity=0.204  Sum_probs=50.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      ..-+++++|++|+|||+++..|...-....   .+.          .+ .+..+.-+|+..+........+..+.+...+
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~ri~~~~---vp~----------~l-~~~~i~~l~~~~liag~~~~g~~e~r~~~i~  103 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAWRIVQGD---VPE----------VM-ADCTIYSLDIGSLLAGTKYRGDFEKRFKALL  103 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHHHHTC---SCG----------GG-TTCEEEECCCC---CCCCCSSCHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHHHHHhCC---ccc----------cc-ccceeEEeeechHhccCccchhHHHHHHHHH
Confidence            346799999999999999988763321100   000          00 2334555666666544333333344444444


Q ss_pred             hhcCCCccEEEEEEeCCCCC------CHHHHHHHHHHHHHhcc
Q 036158           98 GMTKDGIHAVLVVFSVRNRF------SEEEGAAIHILESLFGK  134 (225)
Q Consensus        98 ~~~~~~~~~ii~v~~~~~~~------~~~~~~~~~~l~~~~~~  134 (225)
                      ...... +-+|+++|--+.+      +.........|+..+..
T Consensus       104 ~~~~~~-~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~r  145 (268)
T d1r6bx2         104 KQLEQD-TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS  145 (268)
T ss_dssp             HHHSSS-SCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS
T ss_pred             HHhhcc-CCceEEecchHHHhcCCCCCCccccHHHHhhHHHhC
Confidence            333222 4345555432233      22234566666665543

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.24  E-value=6.2e-05  Score=56.89  Aligned_cols=28  Identities=29%  Similarity=0.336  Sum_probs=24.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .+.-.++|+|++|||||||++.|.|...
T Consensus        42 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~   69 (255)
T d2hyda1          42 EKGETVAFVGMSGGGKSTLINLIPRFYD   69 (255)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHhcCC
Confidence            3456899999999999999999998664

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=5.2e-05  Score=56.55  Aligned_cols=26  Identities=35%  Similarity=0.451  Sum_probs=22.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      +.=.++++|++|+|||||++.|.|..
T Consensus        24 ~Gei~~iiG~nGaGKSTLl~~l~Gl~   49 (231)
T d1l7vc_          24 AGEILHLVGPNGAGKSTLLARMAGMT   49 (231)
T ss_dssp             TTCEEECBCCTTSSHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            34568999999999999999999854

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.22  E-value=9.3e-05  Score=55.34  Aligned_cols=26  Identities=27%  Similarity=0.293  Sum_probs=23.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .=.++|+|++|+|||||++.|.|...
T Consensus        28 Gei~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          28 GEIFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            35689999999999999999999764

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.21  E-value=0.0054  Score=45.26  Aligned_cols=25  Identities=28%  Similarity=0.476  Sum_probs=20.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ...+.+++.|++|+||||++.++..
T Consensus        31 ~~~~~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          31 RDLPHLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             TCCCCEEEECSTTSSHHHHHHTHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHH
Confidence            3345699999999999999988764

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.17  E-value=9.4e-05  Score=51.89  Aligned_cols=21  Identities=19%  Similarity=0.265  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhC
Q 036158           21 NLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .|+|+|.+|||||||++.|+.
T Consensus         3 ii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            468999999999999999874

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.16  E-value=0.00011  Score=55.58  Aligned_cols=26  Identities=31%  Similarity=0.431  Sum_probs=22.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .=.++++|++|||||||++.|.|...
T Consensus        30 Gei~~liG~nGaGKSTLl~~i~Gl~~   55 (254)
T d1g6ha_          30 GDVTLIIGPNGSGKSTLINVITGFLK   55 (254)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHHCCCc
Confidence            34689999999999999999999764

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.16  E-value=0.0001  Score=50.71  Aligned_cols=21  Identities=29%  Similarity=0.507  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhC
Q 036158           21 NLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~   41 (225)
                      -|++.|.+||||||+.+.|..
T Consensus         4 lIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           4 IILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            377899999999999998864

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.15  E-value=0.00011  Score=55.64  Aligned_cols=26  Identities=23%  Similarity=0.298  Sum_probs=22.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .=.++|+|++|||||||++.|.|...
T Consensus        28 GEi~~iiG~sGsGKSTLl~~i~Gl~~   53 (258)
T d1b0ua_          28 GDVISIIGSSGSGKSTFLRCINFLEK   53 (258)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCcc
Confidence            35689999999999999999998764

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.14  E-value=5.9e-05  Score=56.41  Aligned_cols=26  Identities=23%  Similarity=0.403  Sum_probs=23.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCcc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKRA   44 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~~   44 (225)
                      .=.++++|++|||||||++.|.|-..
T Consensus        31 Ge~~~iiG~sGsGKSTll~~i~gl~~   56 (242)
T d1oxxk2          31 GERFGILGPSGAGKTTFMRIIAGLDV   56 (242)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCcC
Confidence            35789999999999999999998764

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.13  E-value=0.00012  Score=52.57  Aligned_cols=24  Identities=17%  Similarity=0.304  Sum_probs=20.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhC
Q 036158           18 GERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .+++|+|+|++||||||+.+.|..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999988863

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.10  E-value=0.00011  Score=51.46  Aligned_cols=21  Identities=38%  Similarity=0.567  Sum_probs=19.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~   40 (225)
                      ++|+++|.+||||||+.+.|.
T Consensus         2 p~IvliG~~G~GKSTig~~La   22 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLA   22 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHH
Confidence            679999999999999998875

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.10  E-value=0.00017  Score=51.88  Aligned_cols=24  Identities=21%  Similarity=0.444  Sum_probs=20.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhC
Q 036158           18 GERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ++..|+|+|++||||||+...|..
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            446889999999999999988864

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.10  E-value=0.00016  Score=51.69  Aligned_cols=24  Identities=29%  Similarity=0.368  Sum_probs=21.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHh
Q 036158           17 NGERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      ...+.|+|-|++|||||||.+.|.
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~   43 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLS   43 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            456789999999999999999986

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.07  E-value=0.00016  Score=51.76  Aligned_cols=24  Identities=29%  Similarity=0.410  Sum_probs=21.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhC
Q 036158           18 GERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      +.++|+++|++||||||+...|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999988873

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.05  E-value=0.00015  Score=51.37  Aligned_cols=21  Identities=48%  Similarity=0.729  Sum_probs=19.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~   40 (225)
                      ++|+|+|++||||||+.+.|.
T Consensus         1 m~I~i~G~pGSGKsT~a~~La   21 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIV   21 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999998885

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.04  E-value=0.00025  Score=51.02  Aligned_cols=28  Identities=14%  Similarity=0.388  Sum_probs=23.5

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           15 PSNGERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        15 ~~~~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      +..+.+.|+|+|++||||||+...|...
T Consensus         4 ~~~~~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           4 SPDQVSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             CTTTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3456788999999999999999998743

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.01  E-value=0.00016  Score=50.39  Aligned_cols=23  Identities=26%  Similarity=0.524  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCC
Q 036158           20 RNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      .-|+|.|++||||||+.+.|...
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35889999999999999998743

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.00021  Score=49.29  Aligned_cols=22  Identities=41%  Similarity=0.664  Sum_probs=19.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ..|.|+|++||||||+.+.|..
T Consensus         3 k~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999988863

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.93  E-value=0.00023  Score=50.64  Aligned_cols=23  Identities=43%  Similarity=0.697  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCC
Q 036158           20 RNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ++|+|+|++||||||+...|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999888743

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.93  E-value=0.00028  Score=49.49  Aligned_cols=24  Identities=25%  Similarity=0.355  Sum_probs=20.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHh
Q 036158           17 NGERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      .....|.++|.+||||||+.+.|.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La   27 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQ   27 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            445789999999999999998886

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.93  E-value=0.00018  Score=56.21  Aligned_cols=24  Identities=33%  Similarity=0.574  Sum_probs=21.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           20 RNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      .+|+|.|++|||||||+|+|++.-
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEeeccccchHHHHHHhhhc
Confidence            469999999999999999999643

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.93  E-value=0.00029  Score=50.59  Aligned_cols=25  Identities=20%  Similarity=0.336  Sum_probs=22.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ...++|+|+|++||||||+...|..
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHH
Confidence            3458999999999999999998874

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.00014  Score=53.18  Aligned_cols=24  Identities=21%  Similarity=0.393  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           20 RNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      .-|+|+|++|+|||||++.|+...
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhC
Confidence            457899999999999999998543

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.91  E-value=0.00024  Score=50.43  Aligned_cols=22  Identities=27%  Similarity=0.486  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ++|+|+|++||||||+.+.|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999998863

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.91  E-value=0.00025  Score=50.11  Aligned_cols=21  Identities=19%  Similarity=0.455  Sum_probs=18.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~   40 (225)
                      ..|+|.|.+||||||+++.|.
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999999885

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00022  Score=50.19  Aligned_cols=22  Identities=27%  Similarity=0.447  Sum_probs=19.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ..|.|.|++|+|||||+..+..
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHH
Confidence            3589999999999999988874

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.00025  Score=50.21  Aligned_cols=22  Identities=27%  Similarity=0.454  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ++|+|+|++||||||..+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988863

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.00032  Score=48.93  Aligned_cols=24  Identities=38%  Similarity=0.547  Sum_probs=20.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhC
Q 036158           18 GERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ...-|+|+|++||||||+.+.|..
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456688899999999999999864

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00032  Score=51.12  Aligned_cols=22  Identities=27%  Similarity=0.339  Sum_probs=19.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 036158           19 ERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      ++.|+|.|++||||||+.+.|.
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~   23 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIV   23 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            5789999999999999999875

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.86  E-value=0.0003  Score=50.87  Aligned_cols=22  Identities=23%  Similarity=0.388  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .-|+++|.+||||||+.+.|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999999984

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.85  E-value=0.00027  Score=50.55  Aligned_cols=21  Identities=29%  Similarity=0.632  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhCC
Q 036158           22 LVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        22 i~v~G~~g~GKSSlin~l~~~   42 (225)
                      |+|+|++||||+||++.|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999999754

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.84  E-value=0.00032  Score=49.76  Aligned_cols=23  Identities=30%  Similarity=0.538  Sum_probs=20.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhC
Q 036158           19 ERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .++|+|+|++||||||+...|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            37899999999999999998863

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.82  E-value=0.00038  Score=48.65  Aligned_cols=23  Identities=26%  Similarity=0.432  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCC
Q 036158           20 RNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ..|+|.|.+||||||+.+.|...
T Consensus         4 kiI~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            45778899999999999998743

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.82  E-value=0.0003  Score=50.03  Aligned_cols=23  Identities=30%  Similarity=0.462  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCC
Q 036158           20 RNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      .-|+|+|++||||||+++.|...
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhh
Confidence            35789999999999999999754

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.80  E-value=0.00048  Score=48.64  Aligned_cols=24  Identities=33%  Similarity=0.339  Sum_probs=20.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhC
Q 036158           18 GERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ...-|+++|.+||||||+...++.
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            346788899999999999998863

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.00038  Score=49.85  Aligned_cols=23  Identities=22%  Similarity=0.413  Sum_probs=20.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhC
Q 036158           19 ERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ++.|+|+|++||||||....|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            37899999999999999988863

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.76  E-value=0.00049  Score=48.09  Aligned_cols=23  Identities=35%  Similarity=0.543  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCC
Q 036158           20 RNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      .-|+|.|++||||||+.+.|...
T Consensus         5 ~iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           5 NILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            45889999999999999999754

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.75  E-value=0.00045  Score=49.55  Aligned_cols=26  Identities=19%  Similarity=0.316  Sum_probs=22.6

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhC
Q 036158           16 SNGERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ..+++.|+|-|..||||||+++.|..
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHH
Confidence            35567899999999999999999874

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.00074  Score=48.55  Aligned_cols=83  Identities=17%  Similarity=0.200  Sum_probs=45.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCccccccCCCCCceeEEEEEEEEeeCCceEEEEeCCCCCCCCCCcHHHHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKRAFKSKAGSSGVTKTCEMQRTMLKDGQVVNVIDTPGLFDSSADSEFVSKEIVKCI   97 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~~~   97 (225)
                      ..-+++++|++|+|||+++..|...-....   .+.          .+ .+..+.-+|+..+........+..+.+...+
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~ri~~~~---vp~----------~L-~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il  107 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQRIINGE---VPE----------GL-KGRRVLALDMGALVAGAKYRGEFEERLKGVL  107 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHHHHTC---SCG----------GG-TTCEEEEECHHHHHTTTCSHHHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHHHHHhCC---CCH----------HH-cCceEEEeeHHHHhccCCccHHHHHHHHHHH
Confidence            346789999999999999977763221100   000          01 3455667787766543333334444455444


Q ss_pred             hhcC-CCccEEEEEEeCC
Q 036158           98 GMTK-DGIHAVLVVFSVR  114 (225)
Q Consensus        98 ~~~~-~~~~~ii~v~~~~  114 (225)
                      .... ..-++|+|+-++.
T Consensus       108 ~e~~~~~~~iILfIDeih  125 (195)
T d1jbka_         108 NDLAKQEGNVILFIDELH  125 (195)
T ss_dssp             HHHHHSTTTEEEEEETGG
T ss_pred             HHHhcCCCcEEEEcchHH
Confidence            3322 2335666665443

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.71  E-value=0.00038  Score=48.54  Aligned_cols=20  Identities=40%  Similarity=0.702  Sum_probs=18.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 036158           21 NLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~   40 (225)
                      +|+++|.+||||||+.+.|.
T Consensus         2 ~I~liG~~GsGKsTi~k~La   21 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALA   21 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            58999999999999998875

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.71  E-value=0.0046  Score=49.16  Aligned_cols=23  Identities=35%  Similarity=0.580  Sum_probs=18.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHh
Q 036158           18 GERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      ..-+++++|++|+|||+++..|.
T Consensus        42 ~k~n~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          42 TKNNPVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             SCCCCEEEECTTSCHHHHHHHHH
T ss_pred             CCCCCeEECCCCCCHHHHHHHHH
Confidence            34567899999999999997665

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.63  E-value=0.00049  Score=49.37  Aligned_cols=21  Identities=33%  Similarity=0.599  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhCC
Q 036158           22 LVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        22 i~v~G~~g~GKSSlin~l~~~   42 (225)
                      |+|+|++||||||+.+.|...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999998643

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.58  E-value=0.00066  Score=50.97  Aligned_cols=25  Identities=24%  Similarity=0.514  Sum_probs=20.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ...-|++.|++|+|||||..+|.+.
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3445889999999999999998753

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.00038  Score=49.60  Aligned_cols=23  Identities=22%  Similarity=0.346  Sum_probs=20.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHh
Q 036158           18 GERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      ....|.++|.+||||||+.+.|.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La   40 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALE   40 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            35678899999999999999886

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.49  E-value=0.00075  Score=48.35  Aligned_cols=25  Identities=28%  Similarity=0.542  Sum_probs=21.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      +...|.|+|++||||||+...|...
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3467899999999999999988643

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.47  E-value=0.00069  Score=47.48  Aligned_cols=20  Identities=20%  Similarity=0.479  Sum_probs=17.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 036158           21 NLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~   40 (225)
                      .|.++|.+||||||+.+.|.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHH
Confidence            47789999999999998885

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.43  E-value=0.00096  Score=47.57  Aligned_cols=23  Identities=26%  Similarity=0.323  Sum_probs=20.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHh
Q 036158           18 GERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      .++.|+|.|.+||||||+.+.|.
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999875

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.39  E-value=0.00092  Score=49.45  Aligned_cols=25  Identities=32%  Similarity=0.432  Sum_probs=21.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ..+.+++.|++|+||||+.+.+.+.
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3467999999999999999998753

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.39  E-value=0.00058  Score=52.16  Aligned_cols=24  Identities=17%  Similarity=0.321  Sum_probs=18.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHh
Q 036158           17 NGERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      .+++.|+|.|.+||||||+.++|.
T Consensus         2 ~k~pIIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           2 KKHPIISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHH
Confidence            466789999999999999998764

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.37  E-value=0.0011  Score=49.04  Aligned_cols=24  Identities=29%  Similarity=0.446  Sum_probs=20.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           19 ERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      .+.+++.|++|+||||+.+.|...
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhc
Confidence            356999999999999999998743

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.36  E-value=0.00082  Score=47.45  Aligned_cols=20  Identities=25%  Similarity=0.311  Sum_probs=17.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 036158           21 NLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~   40 (225)
                      .|+|.|.+||||||+++.|.
T Consensus         3 iivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            35678999999999999985

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.28  E-value=0.0014  Score=48.88  Aligned_cols=25  Identities=28%  Similarity=0.454  Sum_probs=21.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .....++|.|++|+|||++++.+..
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHH
Confidence            3446799999999999999998874

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.20  E-value=0.0016  Score=47.30  Aligned_cols=25  Identities=24%  Similarity=0.255  Sum_probs=22.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .+...|.+.|.+||||||+.+.|..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            5668899999999999999999873

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.16  E-value=0.0022  Score=47.62  Aligned_cols=26  Identities=27%  Similarity=0.342  Sum_probs=22.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      .....+++.|++|+||||++.+|...
T Consensus        50 ~~~~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          50 GVFRAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             TSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHH
Confidence            34467999999999999999999854

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.12  E-value=0.0019  Score=48.15  Aligned_cols=24  Identities=29%  Similarity=0.308  Sum_probs=20.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhC
Q 036158           18 GERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      +...|++.|++|+|||+++++|..
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhh
Confidence            345699999999999999999974

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.06  E-value=0.002  Score=46.88  Aligned_cols=24  Identities=25%  Similarity=0.324  Sum_probs=20.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhC
Q 036158           18 GERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      +.++|++-|++||||||....|..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457889999999999999988864

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.03  E-value=0.0017  Score=50.10  Aligned_cols=24  Identities=29%  Similarity=0.580  Sum_probs=21.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhC
Q 036158           18 GERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      +...|+++||||||||.|.++|..
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhh
Confidence            346689999999999999999884

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.03  E-value=0.0021  Score=47.17  Aligned_cols=22  Identities=27%  Similarity=0.486  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      +.+++.|++|+||||+++.|..
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            5689999999999999988875

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.00  E-value=0.0024  Score=49.20  Aligned_cols=26  Identities=23%  Similarity=0.216  Sum_probs=21.9

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHh
Q 036158           15 PSNGERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        15 ~~~~~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      ..+..+.|+|.|.+|||||||.+.|.
T Consensus        76 ~~k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          76 GQRIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCCCcHHHHHHH
Confidence            34667999999999999999987764

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.79  E-value=0.0022  Score=51.40  Aligned_cols=25  Identities=32%  Similarity=0.407  Sum_probs=21.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      +.--|+|.|+|||||||++.+++..
T Consensus       157 ~~GliLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         157 PHGIILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             hhceEEEEcCCCCCccHHHHHHhhh
Confidence            3456999999999999999998853

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.77  E-value=0.0031  Score=46.17  Aligned_cols=23  Identities=22%  Similarity=0.472  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCC
Q 036158           20 RNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      +.+++.|++|+||||+++.+...
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHH
Confidence            45899999999999999888743

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.0028  Score=45.85  Aligned_cols=23  Identities=17%  Similarity=0.365  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCC
Q 036158           20 RNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      |.|++.|++||||||....|...
T Consensus         4 piI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999888643

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.70  E-value=0.00047  Score=49.22  Aligned_cols=20  Identities=35%  Similarity=0.499  Sum_probs=16.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 036158           21 NLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~   40 (225)
                      ..+|+|++||||||++.+|.
T Consensus        26 ~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            34577999999999999874

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.64  E-value=0.0027  Score=47.28  Aligned_cols=21  Identities=19%  Similarity=0.210  Sum_probs=18.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~   40 (225)
                      ..|+|.|++|+|||||++.+.
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~   50 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGI   50 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHH
Confidence            468899999999999999876

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.64  E-value=0.0029  Score=47.22  Aligned_cols=22  Identities=36%  Similarity=0.694  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .-|++.|++|+|||+++++|..
T Consensus        43 ~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHH
Confidence            3599999999999999999984

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.64  E-value=0.0033  Score=45.45  Aligned_cols=21  Identities=38%  Similarity=0.532  Sum_probs=19.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~   40 (225)
                      +.|+|.|..||||||+.+.|.
T Consensus         4 ~iIgitG~igSGKStv~~~l~   24 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFA   24 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHH
Confidence            468999999999999999875

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.64  E-value=0.0034  Score=45.28  Aligned_cols=21  Identities=33%  Similarity=0.406  Sum_probs=19.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~   40 (225)
                      +.|+|.|..||||||+.+.|-
T Consensus         3 ~iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            568999999999999998875

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.62  E-value=0.0019  Score=48.39  Aligned_cols=21  Identities=29%  Similarity=0.423  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhCC
Q 036158           22 LVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        22 i~v~G~~g~GKSSlin~l~~~   42 (225)
                      +.+.|++|+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            455699999999999998743

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.58  E-value=0.0039  Score=46.72  Aligned_cols=23  Identities=35%  Similarity=0.693  Sum_probs=20.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhC
Q 036158           19 ERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ...+++.|++|+|||+++++|..
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHH
Confidence            35699999999999999999984

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.58  E-value=0.0035  Score=44.94  Aligned_cols=21  Identities=24%  Similarity=0.461  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhC
Q 036158           21 NLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988863

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.57  E-value=0.02  Score=39.33  Aligned_cols=26  Identities=23%  Similarity=0.284  Sum_probs=21.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           18 GERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      +...|++-|.-|+|||||++.+...-
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhc
Confidence            45679999999999999999887543

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.55  E-value=0.0039  Score=45.42  Aligned_cols=22  Identities=18%  Similarity=0.483  Sum_probs=19.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      +.+++.|++|+||||+++.+..
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHH
Confidence            4589999999999999988763

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.49  E-value=0.0039  Score=46.05  Aligned_cols=20  Identities=25%  Similarity=0.453  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 036158           21 NLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~   40 (225)
                      .+++.|++|+||||+++.+.
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~   55 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLA   55 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHH
Confidence            47889999999999998764

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.45  E-value=0.0054  Score=46.62  Aligned_cols=25  Identities=28%  Similarity=0.344  Sum_probs=21.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHh
Q 036158           16 SNGERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        16 ~~~~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      ...++-|+|-|.+|||||||...|.
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHH
Confidence            3456889999999999999997764

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.45  E-value=0.0047  Score=46.28  Aligned_cols=23  Identities=30%  Similarity=0.614  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCC
Q 036158           20 RNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      .-|++.|++|+|||++++++...
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHHH
Confidence            45999999999999999998853

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.44  E-value=0.0044  Score=45.16  Aligned_cols=22  Identities=27%  Similarity=0.508  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      +.+++.|++|+||||++..|..
T Consensus        36 ~~lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          36 PHLLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHH
Confidence            4589999999999999998874

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.37  E-value=0.0028  Score=48.37  Aligned_cols=18  Identities=39%  Similarity=0.673  Sum_probs=16.1

Q ss_pred             EEEEcCCCCCHHHHHHHH
Q 036158           22 LVLVGRTGNGKSATANSI   39 (225)
Q Consensus        22 i~v~G~~g~GKSSlin~l   39 (225)
                      -+|+|+.||||||++.+|
T Consensus        27 nvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEEECCTTTCSTHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHH
Confidence            467799999999999887

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.33  E-value=0.0075  Score=46.55  Aligned_cols=29  Identities=17%  Similarity=0.268  Sum_probs=23.1

Q ss_pred             CCCCCCceeEEEEcCCCCCHHHHHHHHhC
Q 036158           13 TSPSNGERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        13 ~~~~~~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .++..+.-.++++|++|+|||.|..+|..
T Consensus        46 ~~~~~p~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          46 GHEHKPVGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             SCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCCceEEEEECCCcchhHHHHHHHHh
Confidence            34445556799999999999999999863

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.28  E-value=0.0041  Score=50.40  Aligned_cols=22  Identities=32%  Similarity=0.656  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      -+|+++||||||||-|.++|.+
T Consensus        50 sNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ccEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999854

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.27  E-value=0.0039  Score=45.70  Aligned_cols=22  Identities=23%  Similarity=0.379  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ..|+|-|..||||||+++.|..
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999998764

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.26  E-value=0.053  Score=39.41  Aligned_cols=83  Identities=16%  Similarity=0.198  Sum_probs=45.2

Q ss_pred             CccEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEE
Q 036158          103 GIHAVLVVFSVRN-RFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCV  181 (225)
Q Consensus       103 ~~~~ii~v~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (225)
                      ++|.+++|+.+.. .+.....+.+..+.+.    ...+.+||+||+|+....  ..+.         +.+..+....-|.
T Consensus        10 NiD~vliV~s~~~P~~~~~~ldR~Lv~a~~----~~i~pvIvlnK~DL~~~~--~~~~---------~~~~~~~~~~~~~   74 (225)
T d1u0la2          10 NVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDED--DLRK---------VRELEEIYSGLYP   74 (225)
T ss_dssp             SCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHH--HHHH---------HHHHHHHHTTTSC
T ss_pred             cCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----cCCCEEEEEeCcccCCHH--HHHH---------HHHhhccccccee
Confidence            6799999998763 4444433322222222    236889999999986532  2221         2333433332222


Q ss_pred             EeeCCCccccccHHHHHHHHHHH
Q 036158          182 LFDNKTKDTAKRTEQVGKLLSLV  204 (225)
Q Consensus       182 ~~~~~~~~~~~~~~~v~~l~~~i  204 (225)
                      .+    ..|+.++.++++|.+.+
T Consensus        75 v~----~vSa~~~~g~~~L~~~l   93 (225)
T d1u0la2          75 IV----KTSAKTGMGIEELKEYL   93 (225)
T ss_dssp             EE----ECCTTTCTTHHHHHHHH
T ss_pred             EE----EeccccchhHhhHHHHh
Confidence            22    22334557788877766

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.24  E-value=0.0045  Score=44.73  Aligned_cols=21  Identities=19%  Similarity=0.295  Sum_probs=18.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~   40 (225)
                      .-+++.|++|+||||++..+.
T Consensus        25 h~lLl~Gp~G~GKtt~a~~~a   45 (207)
T d1a5ta2          25 HALLIQALPGMGDDALIYALS   45 (207)
T ss_dssp             SEEEEECCTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHH
Confidence            348999999999999998654

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.09  E-value=0.0061  Score=45.82  Aligned_cols=25  Identities=24%  Similarity=0.450  Sum_probs=21.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           19 ERNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      ..-|++.|++|+|||+|++++.+..
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHh
Confidence            3569999999999999999997533

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.0074  Score=44.27  Aligned_cols=23  Identities=26%  Similarity=0.329  Sum_probs=20.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhC
Q 036158           19 ERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      +..|+|=|..||||||+++.|..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            35799999999999999999873

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.91  E-value=0.0057  Score=48.58  Aligned_cols=18  Identities=33%  Similarity=0.649  Sum_probs=16.2

Q ss_pred             EEEEcCCCCCHHHHHHHH
Q 036158           22 LVLVGRTGNGKSATANSI   39 (225)
Q Consensus        22 i~v~G~~g~GKSSlin~l   39 (225)
                      -+|+|++|+||||++.+|
T Consensus        28 ~~i~G~NGsGKS~ileAi   45 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAI   45 (427)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            457799999999999997

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.77  E-value=0.0092  Score=46.99  Aligned_cols=24  Identities=33%  Similarity=0.630  Sum_probs=21.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHh
Q 036158           17 NGERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      .+..+|+++|+||||||-+.++|.
T Consensus        66 ~p~~niLfiGPTGvGKTElAk~LA   89 (364)
T d1um8a_          66 LSKSNILLIGPTGSGKTLMAQTLA   89 (364)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHH
T ss_pred             CCCcceeeeCCCCccHHHHHHHHH
Confidence            455679999999999999999885

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.69  E-value=0.0095  Score=42.82  Aligned_cols=22  Identities=27%  Similarity=0.573  Sum_probs=19.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .-|+|-|..||||||+++.|..
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999988763

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.67  E-value=0.086  Score=38.40  Aligned_cols=69  Identities=22%  Similarity=0.172  Sum_probs=39.0

Q ss_pred             CccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccccEEEEEecCCCCCCCcccHHHHhhhcCCchHHHHHHHcCCcEE
Q 036158          103 GIHAVLVVFSVR-NRFSEEEGAAIHILESLFGKKISDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKEILQLCDNRCV  181 (225)
Q Consensus       103 ~~~~ii~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (225)
                      ++|.+++|+.+. +.+.....+.+-.+.+.    ...+.+||+||+|+..+.  ..++.++.     +.+.....+-+++
T Consensus        10 NiD~~~iV~s~~~P~~~~~~idR~Lv~a~~----~~i~pvIvlnK~DL~~~~--~~~~~~~~-----~~~~y~~~g~~v~   78 (231)
T d1t9ha2          10 NVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIEDQ--DTEDTIQA-----YAEDYRNIGYDVY   78 (231)
T ss_dssp             CCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCCH--HHHHHHHH-----HHHHHHHHTCCEE
T ss_pred             ccCEEEEEEECCCCCCCHHHHHHHHHHHHH----cCCCEEEEEecccccccH--HHHHHHHH-----HHHHHhhccccce
Confidence            679899998874 34444433333333322    236789999999987653  33333333     3344444454444


Q ss_pred             E
Q 036158          182 L  182 (225)
Q Consensus       182 ~  182 (225)
                      .
T Consensus        79 ~   79 (231)
T d1t9ha2          79 L   79 (231)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=0.012  Score=42.50  Aligned_cols=21  Identities=29%  Similarity=0.425  Sum_probs=18.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~   40 (225)
                      .-|+|-|..||||||+++.|.
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~   24 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLV   24 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            458888999999999998875

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.36  E-value=0.011  Score=41.97  Aligned_cols=22  Identities=14%  Similarity=0.199  Sum_probs=19.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      -.+.|.|++|+|||+|...+..
T Consensus        24 ~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          24 SITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHH
Confidence            4688999999999999987764

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.35  E-value=0.013  Score=41.18  Aligned_cols=22  Identities=36%  Similarity=0.607  Sum_probs=19.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .=|++.|++|+||||+.-.|..
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4488999999999999988874

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.32  E-value=0.013  Score=42.98  Aligned_cols=22  Identities=32%  Similarity=0.495  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ..|+|.|..||||||+.+.|..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999853

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.28  E-value=0.014  Score=45.84  Aligned_cols=25  Identities=24%  Similarity=0.383  Sum_probs=21.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      +..-+++.|++|+|||++.++|.+.
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~~  177 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLEL  177 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999998643

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.21  E-value=0.013  Score=41.01  Aligned_cols=22  Identities=32%  Similarity=0.524  Sum_probs=18.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .=|++.|++|+||||+.-.|..
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHH
Confidence            4589999999999999987763

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=93.93  E-value=0.01  Score=46.09  Aligned_cols=26  Identities=31%  Similarity=0.405  Sum_probs=22.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ++.++|+|=|.-|+||||+++.|...
T Consensus         3 m~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           3 MGVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHH
Confidence            34689999999999999999998743

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.67  E-value=0.023  Score=43.68  Aligned_cols=27  Identities=26%  Similarity=0.512  Sum_probs=21.1

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHh
Q 036158           14 SPSNGERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        14 ~~~~~~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      ++..+.-.++++|++|+|||.+.+.|.
T Consensus        48 ~~~kp~~~~lf~Gp~G~GKt~lak~la   74 (315)
T d1qvra3          48 DPNRPIGSFLFLGPTGVGKTELAKTLA   74 (315)
T ss_dssp             CSSSCSEEEEEBSCSSSSHHHHHHHHH
T ss_pred             CCCCCceEEEEECCCcchHHHHHHHHH
Confidence            344444578899999999999998765

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.60  E-value=0.022  Score=41.14  Aligned_cols=22  Identities=18%  Similarity=0.388  Sum_probs=19.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 036158           19 ERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      ..-|++-|.-||||||+++.|.
T Consensus         3 Gk~I~iEG~DGsGKST~~~~L~   24 (214)
T d1tmka_           3 GKLILIEGLDRTGKTTQCNILY   24 (214)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEEECCCCCcHHHHHHHHH
Confidence            3569999999999999998876

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.54  E-value=0.017  Score=46.12  Aligned_cols=22  Identities=36%  Similarity=0.578  Sum_probs=18.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 036158           19 ERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      ...++|+|.||+|||++++.++
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHH
Confidence            3459999999999999997765

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=93.53  E-value=0.011  Score=45.83  Aligned_cols=21  Identities=24%  Similarity=0.547  Sum_probs=18.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~   40 (225)
                      ..|++.|++|+|||++++++.
T Consensus        29 h~vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHH
Confidence            369999999999999999875

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.53  E-value=0.019  Score=41.70  Aligned_cols=24  Identities=21%  Similarity=0.170  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhCCc
Q 036158           20 RNLVLVGRTGNGKSATANSILGKR   43 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~~~   43 (225)
                      -.+.|.|++|+|||+|...+....
T Consensus        35 ~~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          35 SITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTTT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            568899999999999998877443

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.46  E-value=0.019  Score=41.09  Aligned_cols=25  Identities=28%  Similarity=0.332  Sum_probs=21.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .+.--+++.|++++|||+|.++|..
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCceEEEEECCCCccHHHHHHHHHH
Confidence            3456789999999999999998764

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=93.40  E-value=0.022  Score=39.57  Aligned_cols=22  Identities=32%  Similarity=0.531  Sum_probs=18.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .=|++.|++|+||||+.-.|..
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHH
Confidence            4589999999999999977663

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.29  E-value=0.023  Score=41.10  Aligned_cols=21  Identities=19%  Similarity=0.387  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhCC
Q 036158           22 LVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        22 i~v~G~~g~GKSSlin~l~~~   42 (225)
                      +.+.|++|+|||-|++++...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999998754

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=93.20  E-value=0.026  Score=43.70  Aligned_cols=25  Identities=28%  Similarity=0.268  Sum_probs=22.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ..++|.|=|.-|+||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            4589999999999999999998854

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=93.11  E-value=0.023  Score=43.91  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=20.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhC
Q 036158           19 ERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .++|.|=|.-|+||||+++.|..
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC
T ss_pred             ceEEEEECCcCCCHHHHHHHHHH
Confidence            47899999999999999998864

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.10  E-value=0.024  Score=41.40  Aligned_cols=22  Identities=23%  Similarity=0.317  Sum_probs=18.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      -.++|.|++|+|||+|.-.++.
T Consensus        37 ~~~li~G~pGsGKT~~~lq~~~   58 (254)
T d1pzna2          37 AITEVFGEFGSGKTQLAHTLAV   58 (254)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            5688999999999999977653

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=92.80  E-value=0.03  Score=43.06  Aligned_cols=22  Identities=14%  Similarity=0.363  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhCC
Q 036158           21 NLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      .+++.|++|+|||.+.++|.+.
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHH
Confidence            3555799999999999999854

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=92.71  E-value=0.031  Score=41.69  Aligned_cols=21  Identities=19%  Similarity=0.281  Sum_probs=17.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~   40 (225)
                      --++|.|.||+|||+|+..+.
T Consensus        36 ~l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          36 EVIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHH
Confidence            347789999999999986654

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=92.68  E-value=0.03  Score=40.74  Aligned_cols=23  Identities=22%  Similarity=0.440  Sum_probs=19.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhC
Q 036158           19 ERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .-.++|.|++|+|||+|.-.+..
T Consensus        26 gsl~li~G~pGsGKT~l~~qia~   48 (242)
T d1tf7a2          26 DSIILATGATGTGKTLLVSRFVE   48 (242)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHH
Confidence            34588999999999999977663

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.65  E-value=0.045  Score=41.08  Aligned_cols=25  Identities=44%  Similarity=0.551  Sum_probs=21.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhCC
Q 036158           18 GERNLVLVGRTGNGKSATANSILGK   42 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l~~~   42 (225)
                      ....|+|.|..|.|||||...++..
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            3467899999999999999888743

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=92.42  E-value=0.37  Score=34.69  Aligned_cols=19  Identities=21%  Similarity=0.263  Sum_probs=16.9

Q ss_pred             eEEEEcCCCCCHHHHHHHH
Q 036158           21 NLVLVGRTGNGKSATANSI   39 (225)
Q Consensus        21 ~i~v~G~~g~GKSSlin~l   39 (225)
                      .++|.|+..+||||+++++
T Consensus        37 ~~iiTGpN~~GKSt~lk~i   55 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQT   55 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhh
Confidence            4789999999999999775

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=92.35  E-value=0.047  Score=40.85  Aligned_cols=25  Identities=24%  Similarity=0.357  Sum_probs=21.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .+..-+.+.|++++|||+|+++|..
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHH
Confidence            4566788999999999999988764

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=92.34  E-value=0.036  Score=40.14  Aligned_cols=22  Identities=18%  Similarity=0.244  Sum_probs=18.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 036158           19 ERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      .-.++|.|++|+|||+|...+.
T Consensus        34 G~l~~i~G~~G~GKT~~~l~~a   55 (258)
T d2i1qa2          34 QSVTEFAGVFGSGKTQIMHQSC   55 (258)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHH
Confidence            3568899999999999997765

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=91.74  E-value=0.032  Score=42.01  Aligned_cols=16  Identities=19%  Similarity=0.428  Sum_probs=13.9

Q ss_pred             eEEEEcCCCCCHHHHH
Q 036158           21 NLVLVGRTGNGKSATA   36 (225)
Q Consensus        21 ~i~v~G~~g~GKSSli   36 (225)
                      .++|+|.+||||||++
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            3788999999999876

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=91.71  E-value=0.069  Score=35.11  Aligned_cols=24  Identities=25%  Similarity=0.239  Sum_probs=18.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHh
Q 036158           17 NGERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      ...-+.+|.++||+|||+++-.++
T Consensus         6 ~~~~~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1           6 QSFQVAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             SSCEEEEEECCTTSCTTTHHHHHH
T ss_pred             cCCCEEEEEeCCCCCHHHHHHHHH
Confidence            345667889999999999885443

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.70  E-value=0.058  Score=35.06  Aligned_cols=24  Identities=13%  Similarity=0.102  Sum_probs=21.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHh
Q 036158           17 NGERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      +..+.|.+.|.+|+||||+.++|.
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~   27 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALL   27 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHH
Confidence            456899999999999999999996

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=91.69  E-value=0.047  Score=39.18  Aligned_cols=22  Identities=27%  Similarity=0.493  Sum_probs=17.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 036158           19 ERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      .-.+.|.|++|+|||+|.-.+.
T Consensus        26 G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          26 GRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHH
Confidence            3568889999999999985543

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.64  E-value=0.05  Score=39.54  Aligned_cols=23  Identities=13%  Similarity=0.092  Sum_probs=19.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhC
Q 036158           19 ERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .-.++|.|++|+|||+|.-.+..
T Consensus        37 G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          37 MAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             SEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999977763

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.20  E-value=1.8  Score=32.20  Aligned_cols=22  Identities=18%  Similarity=0.389  Sum_probs=18.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 036158           19 ERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      .-|++++|.+|+|||+++-.+.
T Consensus        68 GQr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          68 GQRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             TCBCEEEESTTSSHHHHHHHHH
T ss_pred             CCEEEeecCCCCChHHHHHHHH
Confidence            4578999999999999985554

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=91.19  E-value=0.044  Score=41.59  Aligned_cols=16  Identities=25%  Similarity=0.551  Sum_probs=14.1

Q ss_pred             eEEEEcCCCCCHHHHH
Q 036158           21 NLVLVGRTGNGKSATA   36 (225)
Q Consensus        21 ~i~v~G~~g~GKSSli   36 (225)
                      .++|.|.+||||||++
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            3788999999999876

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=90.64  E-value=0.067  Score=39.58  Aligned_cols=21  Identities=33%  Similarity=0.265  Sum_probs=17.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~   40 (225)
                      -..+|+|.+|+|||+|+-.|.
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHH
Confidence            356789999999999996553

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=90.63  E-value=0.095  Score=38.98  Aligned_cols=21  Identities=19%  Similarity=0.393  Sum_probs=17.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 036158           20 RNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~   40 (225)
                      ..+.|.|++|+|||||.=.+.
T Consensus        55 ~itei~G~~gsGKTtl~l~~~   75 (263)
T d1u94a1          55 RIVEIYGPESSGKTTLTLQVI   75 (263)
T ss_dssp             SEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEecCCCcHHHHHHHHHH
Confidence            568899999999999985554

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=90.49  E-value=0.083  Score=41.19  Aligned_cols=20  Identities=35%  Similarity=0.542  Sum_probs=16.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANS   38 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~   38 (225)
                      ....+|.|++|+||||++..
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHH
Confidence            46788999999999998844

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=90.10  E-value=0.085  Score=39.76  Aligned_cols=25  Identities=16%  Similarity=0.186  Sum_probs=21.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhC
Q 036158           17 NGERNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ...=+++++|.+|+|||+|+..+..
T Consensus        41 grGQr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          41 GRGQRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             BTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred             cCCCeeeEeCCCCCCHHHHHHHHHH
Confidence            4456899999999999999977764

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=89.39  E-value=2.5  Score=31.19  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=18.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSI   39 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l   39 (225)
                      ..-+++++|.+|+|||+|+-.+
T Consensus        66 ~GQr~~Ifg~~g~GKt~l~~~~   87 (276)
T d1fx0a3          66 RGQRELIIGDRQTGKTAVATDT   87 (276)
T ss_dssp             TTCBCBEEESSSSSHHHHHHHH
T ss_pred             CCceEeeccCCCCChHHHHHHH
Confidence            3457899999999999998543

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=88.34  E-value=0.14  Score=37.74  Aligned_cols=19  Identities=37%  Similarity=0.672  Sum_probs=16.5

Q ss_pred             eeEEEEcCCCCCHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANS   38 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~   38 (225)
                      .+|+|.|+-|+||||+.-.
T Consensus         2 r~Iai~gKGGvGKTT~a~n   20 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQN   20 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHH
Confidence            4789999999999999843

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=88.17  E-value=0.18  Score=37.55  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=18.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      .-+.+.|++++|||+|.-.+..
T Consensus        58 ~itei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          58 RITEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCccchHHHHHHHHH
Confidence            4678999999999999976663

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.12  E-value=0.17  Score=36.78  Aligned_cols=20  Identities=30%  Similarity=0.424  Sum_probs=17.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANSI   39 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l   39 (225)
                      ..++|.|+..+||||+++++
T Consensus        42 ~~~iiTGpN~~GKSt~lk~i   61 (234)
T d1wb9a2          42 RMLIITGPNMGGKSTYMRQT   61 (234)
T ss_dssp             CEEEEECCTTSSHHHHHHHH
T ss_pred             eEEEEeccCchhhHHHHHHH
Confidence            45789999999999999775

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=87.90  E-value=0.15  Score=33.97  Aligned_cols=17  Identities=24%  Similarity=0.335  Sum_probs=13.3

Q ss_pred             EEEcCCCCCHHH-HHHHH
Q 036158           23 VLVGRTGNGKSA-TANSI   39 (225)
Q Consensus        23 ~v~G~~g~GKSS-lin~l   39 (225)
                      +++|+..||||| |+..+
T Consensus         6 ~i~GpMfsGKTteLi~~~   23 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRL   23 (139)
T ss_dssp             EEECSTTSCHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHH
Confidence            467999999999 55554

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=87.75  E-value=0.11  Score=39.50  Aligned_cols=16  Identities=31%  Similarity=0.559  Sum_probs=14.2

Q ss_pred             eEEEEcCCCCCHHHHH
Q 036158           21 NLVLVGRTGNGKSATA   36 (225)
Q Consensus        21 ~i~v~G~~g~GKSSli   36 (225)
                      .-+++|.+|+|||||-
T Consensus        16 ~alfFGLSGTGKTTLs   31 (313)
T d2olra1          16 VAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEEccCCCCcccce
Confidence            4579999999999987

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=87.12  E-value=0.12  Score=39.49  Aligned_cols=17  Identities=29%  Similarity=0.520  Sum_probs=14.8

Q ss_pred             eeEEEEcCCCCCHHHHH
Q 036158           20 RNLVLVGRTGNGKSATA   36 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSli   36 (225)
                      -.-+++|.+|+|||||-
T Consensus        15 ~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          15 DVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             CEEEEEECTTSCHHHHT
T ss_pred             CEEEEEccCCCCccccc
Confidence            34689999999999987

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=86.68  E-value=0.13  Score=39.15  Aligned_cols=17  Identities=29%  Similarity=0.518  Sum_probs=14.7

Q ss_pred             eeEEEEcCCCCCHHHHH
Q 036158           20 RNLVLVGRTGNGKSATA   36 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSli   36 (225)
                      -.-+++|-+|+|||||-
T Consensus        15 d~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          15 DVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             CEEEEECCTTSSHHHHH
T ss_pred             CEEEEEccCCCCcccce
Confidence            34579999999999998

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=86.33  E-value=0.24  Score=36.23  Aligned_cols=22  Identities=27%  Similarity=0.424  Sum_probs=19.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhC
Q 036158           20 RNLVLVGRTGNGKSATANSILG   41 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~l~~   41 (225)
                      ..|+|.|++|+||+.+.+.|..
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHH
Confidence            3488999999999999999874

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.37  E-value=0.26  Score=36.78  Aligned_cols=22  Identities=23%  Similarity=0.397  Sum_probs=19.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 036158           19 ERNLVLVGRTGNGKSATANSIL   40 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l~   40 (225)
                      .=|++++|.+|+|||+|+-.+.
T Consensus        68 GQr~~If~~~g~GKt~l~~~i~   89 (276)
T d2jdid3          68 GGKIGLFGGAGVGKTVLIMELI   89 (276)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCEEEeeCCCCCCHHHHHHHHH
Confidence            4579999999999999986665

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=84.27  E-value=0.18  Score=32.54  Aligned_cols=20  Identities=25%  Similarity=0.184  Sum_probs=15.3

Q ss_pred             CCceeEEEEcCCCCCHHHHH
Q 036158           17 NGERNLVLVGRTGNGKSATA   36 (225)
Q Consensus        17 ~~~~~i~v~G~~g~GKSSli   36 (225)
                      ++..+++|.++||+|||...
T Consensus         5 ~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           5 KKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             STTCEEEECCCTTSSTTTTH
T ss_pred             HcCCcEEEEcCCCCChhHHH
Confidence            34567888899999999443

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=83.79  E-value=0.42  Score=35.12  Aligned_cols=22  Identities=32%  Similarity=0.557  Sum_probs=16.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHH
Q 036158           18 GERNLVLVGRTGNGKSATANSI   39 (225)
Q Consensus        18 ~~~~i~v~G~~g~GKSSlin~l   39 (225)
                      ....|++.|+-|+||||+.-.|
T Consensus        19 ~~~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          19 EHGLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHH
Confidence            3455667799999999986443

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=82.93  E-value=0.44  Score=35.16  Aligned_cols=21  Identities=24%  Similarity=0.438  Sum_probs=16.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHH
Q 036158           19 ERNLVLVGRTGNGKSATANSI   39 (225)
Q Consensus        19 ~~~i~v~G~~g~GKSSlin~l   39 (225)
                      ...|.+.|+-|+||||+.-.|
T Consensus         8 p~~i~~sGKGGVGKTTvaa~l   28 (296)
T d1ihua1           8 PPYLFFTGKGGVGKTSISCAT   28 (296)
T ss_dssp             CSEEEEECSTTSSHHHHHHHH
T ss_pred             CeEEEEECCCcChHHHHHHHH
Confidence            346678999999999977443

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=81.50  E-value=0.43  Score=35.39  Aligned_cols=19  Identities=37%  Similarity=0.614  Sum_probs=16.0

Q ss_pred             eeEEEEcCCCCCHHHHHHH
Q 036158           20 RNLVLVGRTGNGKSATANS   38 (225)
Q Consensus        20 ~~i~v~G~~g~GKSSlin~   38 (225)
                      .+|++-|+-|+||||+.-.
T Consensus         3 r~IaisgKGGVGKTT~a~N   21 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQN   21 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHH
Confidence            4688899999999998744

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=80.90  E-value=0.51  Score=32.99  Aligned_cols=21  Identities=24%  Similarity=0.477  Sum_probs=17.1

Q ss_pred             eeEEEEcC-CCCCHHHHHHHHh
Q 036158           20 RNLVLVGR-TGNGKSATANSIL   40 (225)
Q Consensus        20 ~~i~v~G~-~g~GKSSlin~l~   40 (225)
                      .++-|.|. +|+||||+.-.|.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La   23 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALL   23 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHH
Confidence            57889999 4999999985553