Citrus Sinensis ID: 036161

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------
VELMNSNNILIISNLAFCNSPFRTIHPVYCSIAPNTDGIDPDCYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIFNVTVDHLDTDKGRGGNIENIIIRNIKMERVKIPIKISRGSNGHPDEGRDPKAIPKIRGISFVNVFSVNTTKAPICMKNVSLLVLAPSVKWQCQFVSGFNGQVFPLPCPQLQNKSSSWCSFLEFSGEDLNFGVQMNCILGMETAFSKLRL
cEEEEEEcEEEEccEEEEcccccEEEEccccccccccccccccEEEccccEEEEcccccccccccccccccEEEEEEEEccccccEEEEEccccccEEEEEEEEEEEccccccEEEEEEEEEEEEEcccEEEEEEcccccccccccccccccEEEcEEEEcEEEEccccccEEEEcEEEEEcccccEEEEEEEEEEEccEEccccccccccccccccccccccccEEEEEEEEEEEccHHHHccccc
cEEEEcccEEEEEEEEEEcccccEEccEEccccccccccccccEEEEcccEEEEEccccccccEcccccccEEEEEEEEEcccccEEEEEcccccccEEEEEEEEEccccccEEEEEEEEEEEEEEcEEEEEEEEcccccccccccccccccEEEEEEEEEEEEEEEEEcEEEEEEEEEEccccccccEEEEEEEEcccccccccHHcccccccccccccccccHEHHHHHHccEccHHHHHHHccc
velmnsnniliisnlafcnspfrtihpvycsiapntdgidpdcyiesgnglvavksgwdhdgiamarpssniavrrvsgttptcsgvgigremsgrIFNVTVdhldtdkgrggnieNIIIRNIkmervkipikisrgsnghpdegrdpkaipkirgisFVNVFsvnttkapicmknvsllvlapsvkwqcqfvsgfngqvfplpcpqlqnkssswcsflefsgedlnfgvQMNCILGMETAFSKLRL
VELMNSNNILIISNLAFCNSPFRTIHPVYCSIAPNTDGIDPDCYIESGNGLVAVKSGWDHDGIAMARpssniavrrvsgttptcsgvgigremsgrIFNVTvdhldtdkgrggnieniiirnikmervKIPIkisrgsnghpdegrdpkaipkirgISFVNVFSVNTTKAPICMKNVSLLVLAPSVKWQCQFVSGFNGQVFPLPCPQLQNKSSSWCSFLEFSGEDLNFGVQMNCILGMETAFSKLRL
VELMnsnniliisnlAFCNSPFRTIHPVYCSIAPNTDGIDPDCYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIFNVTVDHLDTDKgrggnieniiirniKMERVKIPIKISRGSNGHPDEGRDPKAIPKIRGISFVNVFSVNTTKAPICMKNVSLLVLAPSVKWQCQFVSGFNGQVFPLPCPQLQNKSSSWCSFLEFSGEDLNFGVQMNCILGMETAFSKLRL
*******NILIISNLAFCNSPFRTIHPVYCSIAPNTDGIDPDCYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIFNVTVDHLDTDKGRGGNIENIIIRNIKMERVKIPIKI****************IPKIRGISFVNVFSVNTTKAPICMKNVSLLVLAPSVKWQCQFVSGFNGQVFPLPCPQLQNKSSSWCSFLEFSGEDLNFGVQMNCILGMETAF*****
VELMNSNNILIISNLAFCNSPFRTIHPVYCSIAPNTDGIDPDCYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIFNVTVDHLDTDKGRGGNIENIIIRNIKMERVKIPIKISRGSNGHPDEGRDPKAIPKIRGISFVNVFSVNTTKAPICMKNVSLLVLAPSVKWQCQFVSGFNGQVFPLPC**********CSFLEFSGEDLNFGVQMNCILGMETAFSKLRL
VELMNSNNILIISNLAFCNSPFRTIHPVYCSIAPNTDGIDPDCYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIFNVTVDHLDTDKGRGGNIENIIIRNIKMERVKIPIKISRGSNGHPDEGRDPKAIPKIRGISFVNVFSVNTTKAPICMKNVSLLVLAPSVKWQCQFVSGFNGQVFPLPCPQLQNKSSSWCSFLEFSGEDLNFGVQMNCILGMETAFSKLRL
VELMNSNNILIISNLAFCNSPFRTIHPVYCSIAPNTDGIDPDCYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIFNVTVDHLDTDKGRGGNIENIIIRNIKMERVKIPIKISRGSNGHPDEGRDPKAIPKIRGISFVNVFSVNTTKAPICMKNVSLLVLAPSVKWQCQFVSGFNGQVFPLPCPQLQNKSSSWCSFLEFSGEDLNFGVQMNCILGMETAFSKLRL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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VELMNSNNILIISNLAFCNSPFRTIHPVYCSIAPNTDGIDPDCYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIFNVTVDHLDTDKGRGGNIENIIIRNIKMERVKIPIKISRGSNGHPDEGRDPKAIPKIRGISFVNVFSVNTTKAPICMKNVSLLVLAPSVKWQCQFVSGFNGQVFPLPCPQLQNKSSSWCSFLEFSGEDLNFGVQMNCILGMETAFSKLRL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query247 2.2.26 [Sep-21-2011]
A7PZL3491 Probable polygalacturonas no no 0.910 0.458 0.336 1e-32
>sp|A7PZL3|PGLR_VITVI Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1 Back     alignment and function desciption
 Score =  140 bits (352), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/273 (33%), Positives = 131/273 (47%), Gaps = 48/273 (17%)

Query: 1   VELMNSNNILIISNLAFCNSPFRTIHPVYCS-------------IAPNTDGIDPD----- 42
           +ELM S +I I SNL   NSP   +HPVY                +PNTDGI+PD     
Sbjct: 202 IELMYSADIQI-SNLTLLNSPSWNVHPVYSRNILIQGITILAPVRSPNTDGINPDSCTNT 260

Query: 43  ----CYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIF 98
               CYI SG+  VAVKSGWD  GIA   P+  + +RR++  +P  + + +G EMSG I 
Sbjct: 261 RIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSAVIALGSEMSGGIQ 320

Query: 99  NVTVD-----------HLDTDKGRGGNIENIIIRNIKMERVKIPIKISRGSNGHPDEGRD 147
           +V  +            + T  GRGG +++I +R + M+ +K    ++     H D   D
Sbjct: 321 DVRAEDIVAINSESGIRIKTGIGRGGYVKDIYVRGMTMKTMKWAFWMTGNYGSHADNHYD 380

Query: 148 PKAIPKIRGISFVNVFSVNTTKAP------------ICMKNVS--LLVLAPSVKWQCQFV 193
           PKA P I+GI++ ++ + N + A             IC+ NV+  L   A  V W C  V
Sbjct: 381 PKAFPVIQGINYRDMVAENVSMAARLEGIPSDPFTGICISNVTIHLAAKAKKVPWTCTDV 440

Query: 194 SGFNGQVFPLPCPQLQNKSSSWCSFLEFSGEDL 226
            G +  V P PC  L ++     S   F  E L
Sbjct: 441 EGISSGVTPTPCSTLPDQGPEKTSLCNFPAESL 473

Vitis vinifera (taxid: 29760)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query247
224096000 445 predicted protein [Populus trichocarpa] 0.914 0.507 0.611 2e-80
225431447 488 PREDICTED: probable polygalacturonase [V 0.870 0.440 0.614 1e-76
296088539 528 unnamed protein product [Vitis vinifera] 0.870 0.407 0.614 1e-76
255571381 480 polygalacturonase, putative [Ricinus com 0.878 0.452 0.609 2e-75
147776708 479 hypothetical protein VITISV_043959 [Viti 0.862 0.444 0.594 1e-73
449532729332 PREDICTED: probable polygalacturonase-li 0.874 0.650 0.577 5e-72
224083446 394 predicted protein [Populus trichocarpa] 0.842 0.527 0.598 1e-71
449459262 472 PREDICTED: probable polygalacturonase-li 0.874 0.457 0.577 2e-71
356516364 477 PREDICTED: probable polygalacturonase-li 0.874 0.452 0.555 2e-70
357464681 775 Germin-like protein [Medicago truncatula 0.870 0.277 0.547 1e-69
>gi|224096000|ref|XP_002310517.1| predicted protein [Populus trichocarpa] gi|222853420|gb|EEE90967.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 167/273 (61%), Positives = 186/273 (68%), Gaps = 47/273 (17%)

Query: 1   VELMNSNNILIISNLAFCNSPFRTIHPVYCS-------------IAPNTDGIDPD----- 42
           VELMNSNNILI +NL FCN+PF TIHPVYCS              APNTDGIDPD     
Sbjct: 174 VELMNSNNILI-ANLTFCNAPFWTIHPVYCSNVVVKDMTILAPLKAPNTDGIDPDSSTNV 232

Query: 43  ----CYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIF 98
               CYIESG+ LVAVKSGWD  GI MARPSSNI VRRVSGTTPTCSGVGIG EMSG IF
Sbjct: 233 CIEDCYIESGDDLVAVKSGWDQYGIKMARPSSNIVVRRVSGTTPTCSGVGIGSEMSGGIF 292

Query: 99  NVTVDHL-----------DTDKGRGGNIENIIIRNIKMERVKIPIKISRGSNGHPDEGRD 147
           N+T++ L            TD GRGG I NI I N+ MERVK+PI+ SRGSN HPDEG D
Sbjct: 293 NITIEDLHVWDSAAGVRIKTDNGRGGYIANITISNVTMERVKVPIRFSRGSNDHPDEGWD 352

Query: 148 PKAIPKIRGISFVNVFSVNTTKAP------------ICMKNVSLLVLAPSVKWQCQFVSG 195
           PKA+P ++GIS  NV S N+TKAP            ICMKNVSLL +  S+ W C+FVSG
Sbjct: 353 PKAVPVVKGISIRNVISFNSTKAPVLEGVEDAPFGGICMKNVSLLGVVSSLSWHCEFVSG 412

Query: 196 FNGQVFPLPCPQLQ-NKSSSWCSFLEFSGEDLN 227
           F  +VFP PCPQLQ N SSSWCS+   S  +LN
Sbjct: 413 FADEVFPTPCPQLQSNISSSWCSYSWASSVNLN 445

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225431447|ref|XP_002274138.1| PREDICTED: probable polygalacturonase [Vitis vinifera] Back     alignment and taxonomy information
>gi|296088539|emb|CBI37530.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255571381|ref|XP_002526639.1| polygalacturonase, putative [Ricinus communis] gi|223534031|gb|EEF35751.1| polygalacturonase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147776708|emb|CAN76963.1| hypothetical protein VITISV_043959 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449532729|ref|XP_004173333.1| PREDICTED: probable polygalacturonase-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|224083446|ref|XP_002307030.1| predicted protein [Populus trichocarpa] gi|222856479|gb|EEE94026.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449459262|ref|XP_004147365.1| PREDICTED: probable polygalacturonase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356516364|ref|XP_003526865.1| PREDICTED: probable polygalacturonase-like [Glycine max] Back     alignment and taxonomy information
>gi|357464681|ref|XP_003602622.1| Germin-like protein [Medicago truncatula] gi|355491670|gb|AES72873.1| Germin-like protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query247
TAIR|locus:2119156475 AT4G33440 [Arabidopsis thalian 0.574 0.298 0.530 1.9e-37
TAIR|locus:2128524444 AT4G23820 [Arabidopsis thalian 0.554 0.308 0.392 4.8e-29
TAIR|locus:2152980449 AT5G41870 [Arabidopsis thalian 0.546 0.300 0.397 7.7e-28
TAIR|locus:2098038471 AT3G62110 [Arabidopsis thalian 0.526 0.276 0.393 6.8e-27
TAIR|locus:2202170506 AT1G19170 [Arabidopsis thalian 0.526 0.256 0.373 3.5e-22
TAIR|locus:2078531484 AT3G42950 [Arabidopsis thalian 0.562 0.287 0.306 2e-19
TAIR|locus:2101313469 AT3G48950 [Arabidopsis thalian 0.615 0.324 0.335 1.5e-18
TAIR|locus:2117964495 AT4G23500 [Arabidopsis thalian 0.582 0.290 0.321 2.1e-18
TAIR|locus:2082787476 AT3G61490 [Arabidopsis thalian 0.558 0.289 0.297 3.9e-18
TAIR|locus:2061396477 AT2G23900 [Arabidopsis thalian 0.619 0.320 0.316 1.8e-16
TAIR|locus:2119156 AT4G33440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 86/162 (53%), Positives = 107/162 (66%)

Query:    33 APNTDGIDPD---------CYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPT 83
             APNTDGIDPD         CYIESG+ LVAVKSGWD  G+A+ARPSSNI +RR+SGTT T
Sbjct:   255 APNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDQYGMAVARPSSNIVIRRISGTTRT 314

Query:    84 CSGVGIGREMSGRIFNVTVD--H---------LDTDKXXXXXXXXXXXXXXKMERVKIPI 132
             CSGVGIG EMSG IFN+TV+  H         + TDK               +E+VK+PI
Sbjct:   315 CSGVGIGSEMSGGIFNITVEDIHVWDSAAGLRIKTDKGRGGYISNITFNNVLLEKVKVPI 374

Query:   133 KISRGSNGHPDEGRDPKAIPKIRGISFVNVFSVNTTKAPICM 174
             + S GSN H D+  DPKA+P+++GI   NV S+N+ KAP+ +
Sbjct:   375 RFSSGSNDHSDDKWDPKALPRVKGIYISNVVSLNSRKAPMLL 416
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
TAIR|locus:2128524 AT4G23820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152980 AT5G41870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098038 AT3G62110 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202170 AT1G19170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078531 AT3G42950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101313 AT3G48950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117964 AT4G23500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082787 AT3G61490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061396 AT2G23900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 2e-14
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 3e-05
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 5e-04
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information 
 Score = 71.8 bits (176), Expect = 2e-14
 Identities = 58/206 (28%), Positives = 82/206 (39%), Gaps = 38/206 (18%)

Query: 1   VELMNSNNILIISNLAFCNSPFRTIHPVYCS---------IAP---NTDGIDPD------ 42
           V L    N+L+   L   NSP  T+HPV C           A    NTDG DP       
Sbjct: 241 VVLKGCRNVLL-EGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVL 299

Query: 43  ---CYIESGNGLVAVKSGWDHDGIAMARPSSNIAVR--RVSGTTPTCSGVGIGREMSGRI 97
              C  ++G+  +A+KSG   DG     PS NI +R    S       G+ +G EM G +
Sbjct: 300 IEGCRFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGH---GGLVLGSEMGGGV 356

Query: 98  FNVTVDHLD-----------TDKGRGGNIENIIIRNIKMERVKIPIKISRGSNGHPDEGR 146
            N+TV+              T+ GRGG + NI+  + KM  VK  + I++G        R
Sbjct: 357 QNITVEDCVMDNTDRGLRIKTNDGRGGGVRNIVFEDNKMRNVKTKLSINKGQITFSIVDR 416

Query: 147 DPKAIPKIRGISFVNVFSVNTTKAPI 172
                  + G    +    +   A  
Sbjct: 417 GGLIDFVLSGSPSKDDKLTSKEGAQT 442

Length = 542
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 247
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN02793443 Probable polygalacturonase 100.0
PLN02155394 polygalacturonase 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN03010409 polygalacturonase 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.93
PLN03003456 Probable polygalacturonase At3g15720 99.62
PLN02218431 polygalacturonase ADPG 99.62
PLN03010409 polygalacturonase 99.59
PLN02793443 Probable polygalacturonase 99.56
PLN02155394 polygalacturonase 99.53
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.48
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.42
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.18
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 98.66
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 97.46
smart00656190 Amb_all Amb_all domain. 96.91
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 96.91
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 96.66
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 96.2
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 96.18
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 95.35
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 95.32
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 93.57
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 93.56
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 92.78
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 92.08
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 90.81
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 90.62
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 90.6
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 84.33
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 80.93
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information 
Probab=100.00  E-value=2.4e-44  Score=339.40  Aligned_cols=197  Identities=28%  Similarity=0.484  Sum_probs=171.0

Q ss_pred             CeEeeecCcEEeeceEEeCCCCceEEEecCCC-------------CCCCcccce---------eeEEeeCCceEEEcCCC
Q 036161            1 VELMNSNNILIISNLAFCNSPFRTIHPVYCSI-------------APNTDGIDP---------DCYIESGNGLVAVKSGW   58 (247)
Q Consensus         1 i~~~~~~nv~~I~giti~nsp~w~i~~~~c~n-------------~~NtDGIdi---------nc~i~~gDD~Iaiksg~   58 (247)
                      |+|.+|+|++ |+||+++|||+||+++.+|++             +|||||||+         ||+|.+||||||||+| 
T Consensus       141 l~f~~~~nv~-I~gitl~NSp~w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksg-  218 (456)
T PLN03003        141 LKFRSCNNLR-LSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSG-  218 (456)
T ss_pred             EEEEecCCcE-EeCeEEecCCcEEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCC-
Confidence            5799999999 999999999999999999998             799999999         9999999999999998 


Q ss_pred             CCCCccCCCCeeeEEEEeEEEeCCCCCeEEEeeecC----CCEEEEEEEec-----------ccCCCCCccEEEEEEEEE
Q 036161           59 DHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMS----GRIFNVTVDHL-----------DTDKGRGGNIENIIIRNI  123 (247)
Q Consensus        59 ~~~G~~~~~ps~nI~I~n~~~~~~~~~gIsIGS~~~----g~v~NV~v~n~-----------Kt~~G~gG~v~nI~f~nI  123 (247)
                                ++||+|+||+|..  +|||+|||++.    +.|+||+|+||           |||+|++|+|+||+|+||
T Consensus       219 ----------s~NI~I~n~~c~~--GHGISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~Gg~G~v~nItf~nI  286 (456)
T PLN03003        219 ----------TSNIHISGIDCGP--GHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGI  286 (456)
T ss_pred             ----------CccEEEEeeEEEC--CCCeEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCCCCeEEEEEEEEeE
Confidence                      7999999999986  59999999975    45999999999           999999999999999999


Q ss_pred             EEecccccEEEEecCCCC-CCCCCC-CCCCCeEEeEEEEEEEEEecCCCC-------------EEEEeeEEEecC----C
Q 036161          124 KMERVKIPIKISRGSNGH-PDEGRD-PKAIPKIRGISFVNVFSVNTTKAP-------------ICMKNVSLLVLA----P  184 (247)
Q Consensus       124 ~~~~v~~pi~I~~~y~~~-~~~~~~-~~~~~~I~nItf~nI~~t~~~~~~-------------I~l~nV~i~~~~----~  184 (247)
                      +|+++.+||.|+++|+.. +...+. +...+.|+||+|+||+|+.+...+             |+|+||+|+...    .
T Consensus       287 ~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f~NI~GTs~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~  366 (456)
T PLN03003        287 TLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQ  366 (456)
T ss_pred             EecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEEEEeEEEEeCccceEEEEeCCCCCeeeEEEEEEEEEecCCCCCC
Confidence            999999999999999753 222222 234579999999999998765432             999999998752    2


Q ss_pred             CcceEEEeeecccCceeC-CCCCCCCCC
Q 036161          185 SVKWQCQFVSGFNGQVFP-LPCPQLQNK  211 (247)
Q Consensus       185 ~~~~~csnv~g~~~~v~p-~pC~~~~~~  211 (247)
                      ...|+|+||+|.+..+.| .||.++...
T Consensus       367 ~~~~~C~Nv~G~~~~~~~~~~C~~~~~~  394 (456)
T PLN03003        367 VAQGQCLNVRGASTIAVPGLECLELSTD  394 (456)
T ss_pred             ccCcEEeccccccCceECCCCccccCCC
Confidence            357999999999755554 589988664

>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
3jur_A448 The Crystal Structure Of A Hyperthermoactive Exopol 2e-07
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 Back     alignment and structure 
Iteration: 1

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 49/106 (46%), Gaps = 21/106 (19%)
Query: 17  FCNSPFRTIHPVYC-----------SIAPNTDGIDPD---------CYIESGNGLVAVKS 56
             NSP   IHPV             S  PN DGIDP+         C  ++G+  V +KS
Sbjct: 208 IINSPMWCIHPVLSENVIIRNIEISSTGPNNDGIDPESCKYMLIEKCRFDTGDDSVVIKS 267
Query: 57  GWDHDGIAMARPSSNIAVR-RVSGTTPTCSGVGIGREMSGRIFNVT 101
           G D DG  +  PS  I VR  +  +  +  G+ IG EMSG + NV 
Sbjct: 268 GRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGVRNVV 313

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query247
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 1e-39
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 5e-37
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 2e-35
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 3e-21
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 4e-21
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 2e-19
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 1e-18
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 2e-18
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 4e-17
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 2e-13
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 2e-08
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 2e-08
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 6e-08
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 2e-07
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 6e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
 Score =  141 bits (356), Expect = 1e-39
 Identities = 60/259 (23%), Positives = 99/259 (38%), Gaps = 51/259 (19%)

Query: 1   VELMNSNNILIISNLAFCNSPFRTIHPVYC-----------SIAPNTDGIDPD------- 42
           V+     N+L+   +   NSP   IHPV             S  PN DGIDP+       
Sbjct: 193 VQFYRCRNVLV-EGVKIINSPMWCIHPVLSENVIIRNIEISSTGPNNDGIDPESCKYMLI 251

Query: 43  --CYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRR-VSGTTPTCSGVGIGREMSGRIFN 99
             C  ++G+  V +KSG D DG  +  PS  I VR  +  +  +  G+ IG EMSG + N
Sbjct: 252 EKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGVRN 311

Query: 100 VTVDHLD-----------TDKGRGGNIENIIIRNIKMERV-KIPIKISRGSNGHPDEGRD 147
           V   +             T+  RGG +ENI   +     V +  I+I+   +       +
Sbjct: 312 VVARNNVYMNVERALRLKTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRYDNE-----E 366

Query: 148 PKAIPKIRGISFVNVFSVNTTKAP------------ICMKNVSLLVLAPSVKWQCQFVSG 195
            + +P +R +   N+ +     A             I + +  +     SV  +   +  
Sbjct: 367 GEYLPVVRSVFVKNLKATGGKYAVRIEGLENDYVKDILISDTIIEGAKISVLLEFGQLGM 426

Query: 196 FNGQVFPLPCPQLQNKSSS 214
            N  +      +L  +  +
Sbjct: 427 ENVIMNGSRFEKLYIEGKA 445
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query247
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.95
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.94
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.93
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.69
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.69
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.68
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.67
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.67
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.65
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.6
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.59
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.53
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.52
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.48
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.45
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.43
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 99.37
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.33
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.19
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.96
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 98.78
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 98.75
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 98.67
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 98.23
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 97.97
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 96.62
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 96.0
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 95.85
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 95.5
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 95.39
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 95.16
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 94.55
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 94.36
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 94.11
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 93.87
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 93.68
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 91.19
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 88.46
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 86.44
3riq_A543 Tailspike protein; right handed beta-helix, endorh 85.96
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 84.32
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 82.41
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 80.25
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=3.9e-40  Score=311.57  Aligned_cols=184  Identities=30%  Similarity=0.469  Sum_probs=162.0

Q ss_pred             CeEeeecCcEEeeceEEeCCCCceEEEecCCC-----------CCCCcccce---------eeEEeeCCceEEEcCCCCC
Q 036161            1 VELMNSNNILIISNLAFCNSPFRTIHPVYCSI-----------APNTDGIDP---------DCYIESGNGLVAVKSGWDH   60 (247)
Q Consensus         1 i~~~~~~nv~~I~giti~nsp~w~i~~~~c~n-----------~~NtDGIdi---------nc~i~~gDD~Iaiksg~~~   60 (247)
                      |+|.+|+|++ |+||+++|||+|++|+.+|+|           ++||||||+         ||+|++||||||||+++++
T Consensus       193 i~~~~~~nv~-i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~~~NtDGidi~~s~nV~I~n~~i~~gDDcIaiksg~~~  271 (448)
T 3jur_A          193 VQFYRCRNVL-VEGVKIINSPMWCIHPVLSENVIIRNIEISSTGPNNDGIDPESCKYMLIEKCRFDTGDDSVVIKSGRDA  271 (448)
T ss_dssp             EEEESCEEEE-EESCEEESCSSCSEEEESCEEEEEESCEEEECSTTCCSBCCBSCEEEEEESCEEEESSEEEEEBCCCHH
T ss_pred             EEEEcccceE-EEeeEEEeCCCceEeeeccCCEEEEeEEEeeccCCCccccccCCcCEEEEeeEEEeCCCcEEeccCccc
Confidence            5789999999 999999999999999999998           689999999         9999999999999999999


Q ss_pred             CCccCCCCeeeEEEEeEEEeCCC-CCeEEEeeecCCCEEEEEEEec-----------ccCCCCCccEEEEEEEEEEEecc
Q 036161           61 DGIAMARPSSNIAVRRVSGTTPT-CSGVGIGREMSGRIFNVTVDHL-----------DTDKGRGGNIENIIIRNIKMERV  128 (247)
Q Consensus        61 ~G~~~~~ps~nI~I~n~~~~~~~-~~gIsIGS~~~g~v~NV~v~n~-----------Kt~~G~gG~v~nI~f~nI~~~~v  128 (247)
                      +|+++++|++||+|+||+|+++. ++||+||||+.++|+||+|+||           ||++|+||.|+||+|+||+|.++
T Consensus       272 dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~~~~v~nV~v~n~~~~~t~~GirIKt~~g~gG~v~nI~f~ni~m~~v  351 (448)
T 3jur_A          272 DGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGVRNVVARNNVYMNVERALRLKTNSRRGGYMENIFFIDNVAVNV  351 (448)
T ss_dssp             HHHHHCCCEEEEEEESCEEECSSCSEEEEECSSCTTCEEEEEEESCEEESCSEEEEEECCTTTCSEEEEEEEESCEEEEE
T ss_pred             cccccCCCceeEEEEEeEEecCCCcceEEECCcccCcEEEEEEEEEEEecccceEEEEEEcCCCceEeeEEEEEEEEECC
Confidence            99999999999999999995432 4499999999999999999999           89999999999999999999999


Q ss_pred             cccE-EEEecCCCCCCCCCCCCCCCeEEeEEEEEEEEEecCCCC------------EEEEeeEEEecCCCcceEEEe
Q 036161          129 KIPI-KISRGSNGHPDEGRDPKAIPKIRGISFVNVFSVNTTKAP------------ICMKNVSLLVLAPSVKWQCQF  192 (247)
Q Consensus       129 ~~pi-~I~~~y~~~~~~~~~~~~~~~I~nItf~nI~~t~~~~~~------------I~l~nV~i~~~~~~~~~~csn  192 (247)
                      .+|+ .|+++|+..     ..+..+.|+||+|+||++++...+.            |+|+||+|+...  ....|.+
T Consensus       352 ~~~~i~I~~~Y~~~-----~~~~~~~i~nI~~~NI~~t~~~~~i~i~g~~~~p~~~I~~~nv~i~~~~--~~~~~~~  421 (448)
T 3jur_A          352 SEEVIRINLRYDNE-----EGEYLPVVRSVFVKNLKATGGKYAVRIEGLENDYVKDILISDTIIEGAK--ISVLLEF  421 (448)
T ss_dssp             SSEEEEEESCGGGC-----CCSCCCEEEEEEEESCEEEECSEEEEEECBTTBCEEEEEEEEEEEESCS--EEEEEEE
T ss_pred             ccccEEEEeeccCC-----CCCCCceEEEEEEEeEEEEecceEEEEEeCCCCCEeeEEEEEEEEEccc--cceeEec
Confidence            9988 999999754     1234579999999999999743221            999999998753  2355655
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>3riq_A Tailspike protein; right handed beta-helix, endorhamnosidase, lipopolysaccharide, viral protein; 1.50A {Siphovirus 9na} Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 247
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 8e-14
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 6e-11
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 1e-09
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 3e-09
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 4e-09
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 5e-09
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 9e-09
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 1e-08
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]

 Score = 67.9 bits (165), Expect = 8e-14
 Identities = 55/238 (23%), Positives = 86/238 (36%), Gaps = 62/238 (26%)

Query: 1   VELMNSNNILIISNLAFCNSPFRTIHPVYCSI-------------APNTDGIDP------ 41
           +++  S N  +  N++  NSP   +                    A NTDGIDP      
Sbjct: 154 IQINKSKNFTL-YNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNI 212

Query: 42  ---DCYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIF 98
                 I +G+  VA+K+            + NI++        T  G+ IG E  G ++
Sbjct: 213 TIAYSNIATGDDNVAIKAYKGRA------ETRNISILHN--DFGTGHGMSIGSETMG-VY 263

Query: 99  NVTVDH-----------LDTDKGRGGNIENIIIRNIKMERVKIPIKISRGSNGHPDEGRD 147
           NVTVD            + +DK   G +  +   N+ M+ V  PI I         E ++
Sbjct: 264 NVTVDDLKMNGTTNGLRIKSDKSAAGVVNGVRYSNVVMKNVAKPIVID-----TVYEKKE 318

Query: 148 PKAIPKIRGISFVNVFSVNTTKAP-----------ICMKNVSLLVLAPSVKWQCQFVS 194
              +P    I+F +V S                  + MKNV    L     WQ + V+
Sbjct: 319 GSNVPDWSDITFKDVTSETKGVVVLNGENAKKPIEVTMKNVK---LTSDSTWQIKNVN 373
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query247
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.94
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.53
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.47
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.45
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.41
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.39
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.37
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.34
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 98.72
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 96.01
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 94.57
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 92.18
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 87.04
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 85.07
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 83.9
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

Probab=100.00  E-value=8.3e-39  Score=290.70  Aligned_cols=175  Identities=21%  Similarity=0.253  Sum_probs=148.6

Q ss_pred             CeEeeecCcEEeeceEEeCCCCceEEEecCCC-----------------CCCCcccce---------eeEEeeCCceEEE
Q 036161            1 VELMNSNNILIISNLAFCNSPFRTIHPVYCSI-----------------APNTDGIDP---------DCYIESGNGLVAV   54 (247)
Q Consensus         1 i~~~~~~nv~~I~giti~nsp~w~i~~~~c~n-----------------~~NtDGIdi---------nc~i~~gDD~Iai   54 (247)
                      |.|.+|+|++ |+||+|+|||+|++++.+|+|                 ++||||||+         ||+|++|||||++
T Consensus       107 l~~~~~~nv~-i~gitl~nsp~w~~~~~~s~nv~i~~v~I~~~~~~~~~~~NtDGidi~~s~nV~I~n~~i~~gDDcIai  185 (339)
T d1ia5a_         107 FAAHSLTNSV-ISGLKIVNSPVQVFSVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVAV  185 (339)
T ss_dssp             EEEEEEEEEE-EESCEEECCSSCCEEEESCEEEEEESCEEECGGGTTTTCCSCCSEEEESCEEEEEESCEEECSSCSEEE
T ss_pred             EEEEecCCCE-EeceEEEcCCceEEEEecccEEEEEEEEEecccCCccCCCCCCccccCCCCeEEEeeeEEEcCCCeEEe
Confidence            4789999999 999999999999999999998                 479999999         9999999999999


Q ss_pred             cCCCCCCCccCCCCeeeEEEEeEEEeCCCCCeEEEee---ecCCCEEEEEEEec-----------ccCCCCCccEEEEEE
Q 036161           55 KSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGR---EMSGRIFNVTVDHL-----------DTDKGRGGNIENIII  120 (247)
Q Consensus        55 ksg~~~~G~~~~~ps~nI~I~n~~~~~~~~~gIsIGS---~~~g~v~NV~v~n~-----------Kt~~G~gG~v~nI~f  120 (247)
                      |++            +||+|+||+|..+  ||++|||   ++.+.|+||+|+||           ||++|++|.|+||+|
T Consensus       186 ks~------------~ni~i~n~~c~~g--hG~sigslG~~~~~~v~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nV~f  251 (339)
T d1ia5a_         186 NSG------------ENIYFSGGYCSGG--HGLSIGSVGGRSDNTVKNVTFVDSTIINSDNGVRIKTNIDTTGSVSDVTY  251 (339)
T ss_dssp             SSE------------EEEEEESCEEESS--SCEEEEEECSSSCCEEEEEEEEEEEEESCSEEEEEEEETTCCCEEEEEEE
T ss_pred             cCc------------cEEEEEEeEEecc--ccceecccccCccccEEEEEEECCcccCCcceeEEeeeCCCCEEEEEEEE
Confidence            985            7999999999974  8887655   56788999999999           999999999999999


Q ss_pred             EEEEEecc-cccEEEEecCCCCCCCCCCCCCCCeEEeEEEEEEEEEecCCCC-------------EEEEeeEEEecCCCc
Q 036161          121 RNIKMERV-KIPIKISRGSNGHPDEGRDPKAIPKIRGISFVNVFSVNTTKAP-------------ICMKNVSLLVLAPSV  186 (247)
Q Consensus       121 ~nI~~~~v-~~pi~I~~~y~~~~~~~~~~~~~~~I~nItf~nI~~t~~~~~~-------------I~l~nV~i~~~~~~~  186 (247)
                      +||+|+++ ++||.|+++|+....   .+...+.|+||+|+||+++.+....             |+|+||+|+..  +.
T Consensus       252 ~ni~~~~v~~~pI~I~~~Y~~~~~---~~~~~v~i~nI~~~Ni~gt~~~~~~~~~~~~~~~p~~ni~~~nV~itg~--~~  326 (339)
T d1ia5a_         252 KDITLTSIAKYGIVVQQNYGDTSS---TPTTGVPITDFVLDNVHGSVVSSGTNILISCGSGSCSDWTWTDVSVSGG--KT  326 (339)
T ss_dssp             EEEEEEEESSEEEEEEEEETCTTS---CCCSSSCEEEEEEEEEEEEECTTSEEEEEECCTTCEEEEEEEEEEEESS--BC
T ss_pred             EEEEEeccccccEEEEeecCCCCC---CCCCCcEEEeEEEEeEEEEecccCceEEEeCCCCCEeceEEEeEEEcCC--Cc
Confidence            99999998 579999999975322   2334457999999999999765432             88888888753  34


Q ss_pred             ceEEEeeec
Q 036161          187 KWQCQFVSG  195 (247)
Q Consensus       187 ~~~csnv~g  195 (247)
                      .+.|+||.+
T Consensus       327 ~~~C~nv~~  335 (339)
T d1ia5a_         327 SSKCTNVPS  335 (339)
T ss_dssp             CSCCBSCCT
T ss_pred             ceEeECCCc
Confidence            566777653
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure