Citrus Sinensis ID: 036165
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 566 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FGR2 | 534 | Pentatricopeptide repeat- | yes | no | 0.885 | 0.938 | 0.592 | 1e-174 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.830 | 0.539 | 0.354 | 6e-93 | |
| Q9STE1 | 857 | Pentatricopeptide repeat- | no | no | 0.821 | 0.542 | 0.333 | 9e-88 | |
| O81767 | 823 | Pentatricopeptide repeat- | no | no | 0.830 | 0.571 | 0.349 | 6e-87 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.828 | 0.672 | 0.329 | 2e-86 | |
| Q9C8L6 | 717 | Pentatricopeptide repeat- | no | no | 0.821 | 0.648 | 0.380 | 7e-86 | |
| Q9SV26 | 768 | Pentatricopeptide repeat- | no | no | 0.787 | 0.580 | 0.379 | 2e-85 | |
| P0C899 | 686 | Putative pentatricopeptid | no | no | 0.825 | 0.680 | 0.361 | 8e-85 | |
| Q9SS83 | 1028 | Pentatricopeptide repeat- | no | no | 0.881 | 0.485 | 0.328 | 4e-84 | |
| Q9LNU6 | 760 | Pentatricopeptide repeat- | no | no | 0.775 | 0.577 | 0.349 | 1e-83 |
| >sp|Q9FGR2|PP436_ARATH Pentatricopeptide repeat-containing protein At5g59600 OS=Arabidopsis thaliana GN=PCMP-E1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 610 bits (1574), Expect = e-174, Method: Compositional matrix adjust.
Identities = 298/503 (59%), Positives = 377/503 (74%), Gaps = 2/503 (0%)
Query: 66 KMPIISRSFHL-SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYT 124
K+ I+ SF L S +Y E IE RDR G++LHA L+ SG+ARLT+IA KL+TFY
Sbjct: 3 KLTIVPSSFRLLSIGSYVELIEANGRDRLFCRGRVLHAHLVTSGIARLTRIAAKLVTFYV 62
Query: 125 ECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPS 184
EC + AR +FDE+PK +I + + GA AR GY+QE++ F EM+ GLK + F++PS
Sbjct: 63 ECGKVLDARKVFDEMPKRDISGCVVMIGACARNGYYQESLDFFREMYKDGLKLDAFIVPS 122
Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
+LKA +L D G+ IH LVLK S+ +DAF+VSSLIDMYSK G V A+KVF ++ E+D
Sbjct: 123 LLKASRNLLDREFGKMIHCLVLKFSYESDAFIVSSLIDMYSKFGEVGNARKVFSDLGEQD 182
Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
+V NAM+SGY A EALNLV+++ +KP+V+TWN LISGFS ++ VS++ +
Sbjct: 183 LVVFNAMISGYANNSQADEALNLVKDMKLLGIKPDVITWNALISGFSHMRNEEKVSEILE 242
Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
LM G +PDVVSWTS+ISGLVHNF N++AFD FK+ML+ G P SATI ++LPAC + A
Sbjct: 243 LMCLDGYKPDVVSWTSIISGLVHNFQNEKAFDAFKQMLTHGLYPNSATIITLLPACTTLA 302
Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
M+ GKEIHG ++V G+E VRSAL+DMY KCGFISEA LF K ++ TVT+NSMIF
Sbjct: 303 YMKHGKEIHGYSVVTGLEDHGFVRSALLDMYGKCGFISEAMILFRKTPKKTTVTFNSMIF 362
Query: 425 GCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM 483
ANHG D+A+ELF+QME +KLDHL+FTA+LTAC H GL +LGQ LF +MQ KY+I+
Sbjct: 363 CYANHGLADKAVELFDQMEATGEKLDHLTFTAILTACSHAGLTDLGQNLFLLMQNKYRIV 422
Query: 484 PRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKH 543
PR EHYACMVDLLGRAG+L EAYEMIK M EPDLFVWGALL AC+NHGN+ELA IAAKH
Sbjct: 423 PRLEHYACMVDLLGRAGKLVEAYEMIKAMRMEPDLFVWGALLAACRNHGNMELARIAAKH 482
Query: 544 LSELEPESAANNMLLTDLYANAG 566
L+ELEPE++ N +LLT LYANAG
Sbjct: 483 LAELEPENSGNGLLLTSLYANAG 505
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 342 bits (876), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 181/511 (35%), Positives = 280/511 (54%), Gaps = 41/511 (8%)
Query: 92 RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
R++ G+ LH ++ SG + L+ FY + Q + AR +FDE+ + ++ W ++
Sbjct: 209 RSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSII 268
Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
Y G ++ ++VF +M + G++ ++ I SV C I G +HS+ +K F
Sbjct: 269 NGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFS 328
Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
+ ++L+DMYSKCG ++ AK VF EM ++ +V+ +M++GY + GLA EA+ L EE+
Sbjct: 329 REDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEM 388
Query: 272 GTPRVKPNVVT----------------------W-------------NTLISGFSKSGDQ 296
+ P+V T W N L+ ++K G
Sbjct: 389 EEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSM 448
Query: 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG-FCPTSATISS 355
+F MR K D++SW ++I G N +EA F +L + F P T++
Sbjct: 449 QEAELVFSEMRVK----DIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVAC 504
Query: 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN 415
+LPACAS + +G+EIHG + G D HV ++LVDMYAKCG + A LFD ++ ++
Sbjct: 505 VLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKD 564
Query: 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFN 474
V+W MI G HG+ EAI LFNQM + + D +SF ++L AC H GLV+ G R FN
Sbjct: 565 LVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFN 624
Query: 475 MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNI 534
+M+ + KI P EHYAC+VD+L R G L +AY I+ M PD +WGALL C+ H ++
Sbjct: 625 IMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDV 684
Query: 535 ELAEIAAKHLSELEPESAANNMLLTDLYANA 565
+LAE A+ + ELEPE+ +L+ ++YA A
Sbjct: 685 KLAEKVAEKVFELEPENTGYYVLMANIYAEA 715
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 324 bits (831), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 169/506 (33%), Positives = 271/506 (53%), Gaps = 41/506 (8%)
Query: 97 GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
G LH ++VSG+ I L++ Y++C A LF + + + W + Y +
Sbjct: 258 GVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQ 317
Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
G +E++T F+EM G+ + S+L + ++ ++IH +++HS D F+
Sbjct: 318 SGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFL 377
Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
S+LID Y KC V A+ +F + D+V AM+SGY+ GL ++L + + ++
Sbjct: 378 TSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKI 437
Query: 277 KPNVVTWNTL-----------------------------------ISGFSKSGDQVMVSK 301
PN +T ++ I ++K G + +
Sbjct: 438 SPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYE 497
Query: 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
+F+ + + D+VSW S+I+ + A D F++M G C +IS+ L ACA
Sbjct: 498 IFERLSKR----DIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACA 553
Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
+ + GK IHG I + D++ S L+DMYAKCG + A +F M E+N V+WNS
Sbjct: 554 NLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNS 613
Query: 422 MIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479
+I C NHG +++ LF++M E+ + D ++F ++++CCHVG V+ G R F M E
Sbjct: 614 IIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTED 673
Query: 480 YKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEI 539
Y I P+ EHYAC+VDL GRAGRL EAYE +K+M PD VWG LLGAC+ H N+ELAE+
Sbjct: 674 YGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEV 733
Query: 540 AAKHLSELEPESAANNMLLTDLYANA 565
A+ L +L+P ++ +L+++ +ANA
Sbjct: 734 ASSKLMDLDPSNSGYYVLISNAHANA 759
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 322 bits (825), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 178/510 (34%), Positives = 285/510 (55%), Gaps = 40/510 (7%)
Query: 92 RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
R + G +H + G +A LI Y+ + + +AR+LFDE+P ++ W A+
Sbjct: 164 RTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMI 223
Query: 152 GAYARRGYHQEAVTVFHEMHIQGLK-QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF 210
Y + G +EA+T+ + GL+ + + S+L AC D G IHS +KH
Sbjct: 224 SGYCQSGNAKEALTLSN-----GLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGL 278
Query: 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE 270
++ FV + LID+Y++ G + +KVFD M +D+++ N+++ Y A++L +E
Sbjct: 279 ESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQE 338
Query: 271 IGTPRVKPNVVTWNTLISGFSKSGD---------------------------QVMVSKLF 303
+ R++P+ +T +L S S+ GD VM +KL
Sbjct: 339 MRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLG 398
Query: 304 QLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG-FCPTSATISSIL 357
+ A+ V DV+SW ++ISG N EA + + M +G T S+L
Sbjct: 399 LVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVL 458
Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
PAC+ A +R+G ++HG + G+ D+ V ++L DMY KCG + +A +LF ++ N+V
Sbjct: 459 PACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSV 518
Query: 418 TWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
WN++I HG+ ++A+ LF +M +E K DH++F +L+AC H GLV+ GQ F MM
Sbjct: 519 PWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMM 578
Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
Q Y I P +HY CMVD+ GRAG+L A + IK+MS +PD +WGALL AC+ HGN++L
Sbjct: 579 QTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDL 638
Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
+IA++HL E+EPE ++LL+++YA+AG
Sbjct: 639 GKIASEHLFEVEPEHVGYHVLLSNMYASAG 668
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 320 bits (820), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 188/570 (32%), Positives = 293/570 (51%), Gaps = 101/570 (17%)
Query: 98 KILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARR 157
+ +HA +I SG + I +LI Y++C ++ R +FD++P+ NI+ W ++ +
Sbjct: 40 RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKL 99
Query: 158 GYHQEAVTVFHEM-------------------------------HIQGLKQNIFVIPSVL 186
G+ EA ++F M H +G N + SVL
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVL 159
Query: 187 KACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIV 246
AC L+D+ G ++HSL+ K F +D ++ S+L+DMYSKCG+V A++VFDEM ++++V
Sbjct: 160 SACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVV 219
Query: 247 AMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS--------------- 291
+ N++++ + Q G A EAL++ + + RV+P+ VT ++IS +
Sbjct: 220 SWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRV 279
Query: 292 ----KSGDQVMVSKLFQLMRAKGVE-------------PDVVSWTSVIS----------- 323
K + +++S F M AK +V++ TS+IS
Sbjct: 280 VKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAA 339
Query: 324 --------------------GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363
G N N+EA F + + CPT + ++IL ACA
Sbjct: 340 RLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADL 399
Query: 364 ANMRRGKEI------HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
A + G + HG G E D+ V ++L+DMY KCG + E +F KM ER+ V
Sbjct: 400 AELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCV 459
Query: 418 TWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
+WN+MI G A +GY +EA+ELF +M E +K DH++ VL+AC H G VE G+ F+ M
Sbjct: 460 SWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSM 519
Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
+ + P +HY CMVDLLGRAG L EA MI+ M +PD +WG+LL ACK H NI L
Sbjct: 520 TRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITL 579
Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
+ A+ L E+EP ++ +LL+++YA G
Sbjct: 580 GKYVAEKLLEVEPSNSGPYVLLSNMYAELG 609
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8L6|PPR80_ARATH Pentatricopeptide repeat-containing protein At1g53600, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E63 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 318 bits (815), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 181/476 (38%), Positives = 280/476 (58%), Gaps = 11/476 (2%)
Query: 94 LQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
L++GK A + G+A ++ + ++ Y + I AR LFD + + N+ W A+
Sbjct: 188 LRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMID 247
Query: 153 AYARRGYHQEAVTVFHEMHIQG-LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
Y + G+ ++ +F M +G +K N + + KAC G +IH LV +
Sbjct: 248 GYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLE 307
Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
D F+ +SL+ MYSK G + +AK VF M KD V+ N++++G VQR +EA L E++
Sbjct: 308 FDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKM 367
Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
++V+W +I GFS G+ +LF +M E D ++WT++IS V N
Sbjct: 368 PGK----DMVSWTDMIKGFSGKGEISKCVELFGMMP----EKDNITWTAMISAFVSNGYY 419
Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
+EA F +ML + CP S T SS+L A AS A++ G +IHG + M + DL V+++L
Sbjct: 420 EEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSL 479
Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDH 450
V MY KCG ++A +F +SE N V++N+MI G + +G+ +A++LF+ +E K+ +
Sbjct: 480 VSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNG 539
Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
++F A+L+AC HVG V+LG + F M+ Y I P +HYACMVDLLGR+G L +A +I
Sbjct: 540 VTFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLIS 599
Query: 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
TM +P VWG+LL A K H ++LAE+AAK L ELEP+SA ++L+ LY+ G
Sbjct: 600 TMPCKPHSGVWGSLLSASKTHLRVDLAELAAKKLIELEPDSATPYVVLSQLYSIIG 655
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SV26|PP297_ARATH Pentatricopeptide repeat-containing protein At4g01030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 316 bits (810), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 171/451 (37%), Positives = 264/451 (58%), Gaps = 5/451 (1%)
Query: 119 LITFYTECQNIHHARMLFDEIP----KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQG 174
+++ YT+ + A L DE+ K +I W +L YA +G ++A+ V M I G
Sbjct: 161 ILSSYTKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAG 220
Query: 175 LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
LK + I S+L+A + G+ IH +L++ D +V ++LIDMY K G + A+
Sbjct: 221 LKPSTSSISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVETTLIDMYIKTGYLPYAR 280
Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG 294
VFD M K+IVA N++VSG L +A L+ + +KP+ +TWN+L SG++ G
Sbjct: 281 MVFDMMDAKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLG 340
Query: 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354
+ M+ KGV P+VVSWT++ SG N A F +M +G P +AT+S
Sbjct: 341 KPEKALDVIGKMKEKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMS 400
Query: 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER 414
++L + + GKE+HG + + D +V +ALVDMY K G + A +F + +
Sbjct: 401 TLLKILGCLSLLHSGKEVHGFCLRKNLICDAYVATALVDMYGKSGDLQSAIEIFWGIKNK 460
Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLF 473
+ +WN M+ G A G +E I F+ M E + D ++FT+VL+ C + GLV+ G + F
Sbjct: 461 SLASWNCMLMGYAMFGRGEEGIAAFSVMLEAGMEPDAITFTSVLSVCKNSGLVQEGWKYF 520
Query: 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGN 533
++M+ +Y I+P EH +CMVDLLGR+G L EA++ I+TMS +PD +WGA L +CK H +
Sbjct: 521 DLMRSRYGIIPTIEHCSCMVDLLGRSGYLDEAWDFIQTMSLKPDATIWGAFLSSCKIHRD 580
Query: 534 IELAEIAAKHLSELEPESAANNMLLTDLYAN 564
+ELAEIA K L LEP ++AN M++ +LY+N
Sbjct: 581 LELAEIAWKRLQVLEPHNSANYMMMINLYSN 611
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 315 bits (806), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 173/478 (36%), Positives = 277/478 (57%), Gaps = 11/478 (2%)
Query: 94 LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
+++ + +H+++I+ L + + KL+ Y +++ AR +FDEIP+ N+ + +
Sbjct: 55 IRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRS 114
Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
Y G++ E V VF M ++ + + P VLKAC I G KIH K +
Sbjct: 115 YVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSST 174
Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
FV + L+ MY KCG + +A+ V DEM +D+V+ N++V GY Q +AL + E+ +
Sbjct: 175 LFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMES 234
Query: 274 PRVKPNVVTWNTLISGFSKSG-DQVM-VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
++ + T +L+ S + + VM V +F M K + VSW +I + N
Sbjct: 235 VKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSL----VSWNVMIGVYMKNAMP 290
Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
EA + + M + GF P + +I+S+LPAC + + GK+IHG + +L + +AL
Sbjct: 291 VEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENAL 350
Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMI--FGCANHGYCDEAIELFNQMEERKKL- 448
+DMYAKCG + +AR +F+ M R+ V+W +MI +G + G CD A+ LF+++++ +
Sbjct: 351 IDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRG-CD-AVALFSKLQDSGLVP 408
Query: 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508
D ++F L AC H GL+E G+ F +M + YKI PR EH ACMVDLLGRAG++ EAY
Sbjct: 409 DSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRF 468
Query: 509 IKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
I+ MS EP+ VWGALLGAC+ H + ++ +AA L +L PE + +LL+++YA AG
Sbjct: 469 IQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAG 526
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 312 bits (800), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 176/535 (32%), Positives = 290/535 (54%), Gaps = 36/535 (6%)
Query: 67 MPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTEC 126
M + S +++ ++ + L+ G H+ +I LA+ + L+ Y +C
Sbjct: 417 MDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKC 476
Query: 127 QNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVL 186
+ AR +F+ + + W + G+Y + EA +F M++ G+ + + S L
Sbjct: 477 GALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTL 536
Query: 187 KACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIV 246
KAC H+ + G+++H L +K D SSLIDMYSKCG ++ A+KVF + E +V
Sbjct: 537 KACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVV 596
Query: 247 AMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLIS------------------ 288
+MNA+++GY Q L EA+ L +E+ T V P+ +T+ T++
Sbjct: 597 SMNALIAGYSQNNL-EEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQI 655
Query: 289 ---GFSKSGDQVMVSKLFQLMRAKGVE------------PDVVSWTSVISGLVHNFCNDE 333
GFS G+ + +S L M ++G+ +V WT ++SG N +E
Sbjct: 656 TKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEE 715
Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
A +KEM G P AT ++L C+ +++R G+ IH + + D + L+D
Sbjct: 716 ALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLID 775
Query: 394 MYAKCGFISEARTLFDKMSER-NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL-DHL 451
MYAKCG + + +FD+M R N V+WNS+I G A +GY ++A+++F+ M + + D +
Sbjct: 776 MYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEI 835
Query: 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511
+F VLTAC H G V G+++F MM +Y I R +H ACMVDLLGR G L EA + I+
Sbjct: 836 TFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEA 895
Query: 512 MSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
+ +PD +W +LLGAC+ HG+ EI+A+ L ELEP++++ +LL+++YA+ G
Sbjct: 896 QNLKPDARLWSSLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQG 950
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 311 bits (796), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 178/510 (34%), Positives = 263/510 (51%), Gaps = 71/510 (13%)
Query: 93 ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP------------ 140
A + GK +H VSGL + + Y C + AR +FD +
Sbjct: 131 AFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLC 190
Query: 141 -----------------------KTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQ 177
+ NI W + + R GYH+EAV +F ++H G
Sbjct: 191 AYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCP 250
Query: 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF 237
+ + SVL + G + G IH V+K D V+S++IDMY K G V +F
Sbjct: 251 DQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLF 310
Query: 238 DEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQV 297
++ + NA ++G + GL +AL
Sbjct: 311 NQFEMMEAGVCNAYITGLSRNGLVDKAL-------------------------------- 338
Query: 298 MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSIL 357
++F+L + + +E +VVSWTS+I+G N + EA + F+EM G P TI S+L
Sbjct: 339 ---EMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSML 395
Query: 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV 417
PAC + A + G+ HG A+ + + ++HV SAL+DMYAKCG I+ ++ +F+ M +N V
Sbjct: 396 PACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLV 455
Query: 418 TWNSMIFGCANHGYCDEAIELFNQ-MEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
WNS++ G + HG E + +F M R K D +SFT++L+AC VGL + G + F MM
Sbjct: 456 CWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMM 515
Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
E+Y I PR EHY+CMV+LLGRAG+L EAY++IK M EPD VWGALL +C+ N++L
Sbjct: 516 SEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDL 575
Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
AEIAA+ L LEPE+ +LL+++YA G
Sbjct: 576 AEIAAEKLFHLEPENPGTYVLLSNIYAAKG 605
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 566 | ||||||
| 147860004 | 1321 | hypothetical protein VITISV_006763 [Viti | 0.918 | 0.393 | 0.650 | 0.0 | |
| 225434871 | 545 | PREDICTED: pentatricopeptide repeat-cont | 0.908 | 0.943 | 0.656 | 0.0 | |
| 356541211 | 548 | PREDICTED: pentatricopeptide repeat-cont | 0.879 | 0.908 | 0.677 | 0.0 | |
| 449450760 | 547 | PREDICTED: pentatricopeptide repeat-cont | 0.897 | 0.928 | 0.631 | 0.0 | |
| 255559020 | 547 | pentatricopeptide repeat-containing prot | 0.904 | 0.936 | 0.635 | 0.0 | |
| 357472867 | 550 | Pentatricopeptide repeat-containing prot | 0.863 | 0.889 | 0.667 | 0.0 | |
| 297796913 | 534 | pentatricopeptide repeat-containing prot | 0.867 | 0.919 | 0.601 | 1e-174 | |
| 15238469 | 534 | pentatricopeptide repeat-containing prot | 0.885 | 0.938 | 0.592 | 1e-172 | |
| 224054634 | 429 | predicted protein [Populus trichocarpa] | 0.701 | 0.925 | 0.694 | 1e-166 | |
| 357120134 | 466 | PREDICTED: pentatricopeptide repeat-cont | 0.742 | 0.901 | 0.513 | 1e-119 |
| >gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/521 (65%), Positives = 420/521 (80%), Gaps = 1/521 (0%)
Query: 47 SASDAGKPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIV 106
+A+ A + LIN + Y+ R+F S Y++ I++Y RDRAL G+ LHA L++
Sbjct: 772 AAAAAMQSLINRANVYRVYRNISTHRTFQSSSDTYAKAIDMYARDRALYRGRALHAHLVI 831
Query: 107 SGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTV 166
GLARLT A KL++FYTEC + +AR LFD+IP TNI RWI LTGA ARRG+++EA++
Sbjct: 832 IGLARLTYFAAKLMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSA 891
Query: 167 FHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSK 226
F EM +GL+ N FV+PS+LKACGHLSD TGE +H+++LK+SF +DA+++S+LI MYSK
Sbjct: 892 FSEMQKEGLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSK 951
Query: 227 CGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTL 286
CG VEKA +VFD +V+KD+V MNAMVSGY Q G EALBLV+++ VKPNVV+WNTL
Sbjct: 952 CGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTL 1011
Query: 287 ISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGF 346
I+GFS+ GD+ MVS++F+LM A GVEPDVVSWTSVISG V NF N E FD FKEML QGF
Sbjct: 1012 IAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGF 1071
Query: 347 CPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEART 406
CP+S TISS+LPAC + AN+R GKEIHG A+V+GVE D++VRSALVDMYAKCG+ISEA+
Sbjct: 1072 CPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKI 1131
Query: 407 LFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGL 465
LF M ERNTVTWNS+IFG ANHGYC+EAIELFNQMEE KLDHL+FTAVL AC H G+
Sbjct: 1132 LFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGM 1191
Query: 466 VELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525
VELG+ LF MQEKY+I PR EHYACMVDLLGRAG+L+EAY++IK M EPD FVWGALL
Sbjct: 1192 VELGESLFXKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALL 1251
Query: 526 GACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
GAC+NHGNIELAE+AA+HL ELEPES +++LL++LYA+AG
Sbjct: 1252 GACRNHGNIELAEVAAEHLFELEPESPGSSLLLSNLYADAG 1292
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225434871|ref|XP_002280683.1| PREDICTED: pentatricopeptide repeat-containing protein At5g59600-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/515 (65%), Positives = 416/515 (80%), Gaps = 1/515 (0%)
Query: 53 KPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARL 112
+ LIN + Y+ R+F S Y++ I++Y RDRAL G+ LHA L++ GLARL
Sbjct: 2 QSLINRANVYRVYRNISTHRTFQSSSDTYAKAIDMYARDRALYRGRALHAHLVIIGLARL 61
Query: 113 TQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHI 172
T A KL++FYTEC + +AR LFD+IP TNI RWI LTGA ARRG+++EA++ F EM
Sbjct: 62 TYFAAKLMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQK 121
Query: 173 QGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK 232
+GL+ N FV+PS+LKACGHLSD TGE +H+++LK+SF +DA+++S+LI MYSKCG VEK
Sbjct: 122 EGLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEK 181
Query: 233 AKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK 292
A +VFD +V+KD+V MNAMVSGY Q G EALNLV+++ VKPNVV+WNTLI+GFS+
Sbjct: 182 ACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALNLVQKMQQAGVKPNVVSWNTLIAGFSQ 241
Query: 293 SGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352
GD+ MVS++F+LM A GVEPDVVSWTSVISG V NF N E FD FKEML QGFCP+S T
Sbjct: 242 VGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVT 301
Query: 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS 412
ISS+LPAC + AN+R GKEIHG A+V+GVE D++VRSALVDMYAKCG+ISEA+ LF M
Sbjct: 302 ISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMP 361
Query: 413 ERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQR 471
ERNTVTWNS+IFG ANHGYC+EAIELFNQMEE KLDHL+FTAVL AC H G+VELG+
Sbjct: 362 ERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGES 421
Query: 472 LFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNH 531
LF MQEKY+I PR EHYACMVDLLGRAG+L+EAY++IK M EPD FVWGALLGAC+NH
Sbjct: 422 LFRKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNH 481
Query: 532 GNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
GNIELAE+AA+HL ELEPES +++LL++LYA+AG
Sbjct: 482 GNIELAEVAAEHLFELEPESPGSSLLLSNLYADAG 516
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356541211|ref|XP_003539074.1| PREDICTED: pentatricopeptide repeat-containing protein At5g59600-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/503 (67%), Positives = 401/503 (79%), Gaps = 5/503 (0%)
Query: 69 IISRSFHLS-PAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQ 127
IISR F S P +Y+E I++Y RDRAL +GK LHA L+ +G AR +A+ L++FYT C
Sbjct: 17 IISRHFFRSEPESYAELIDMYARDRALHAGKKLHAHLVTNGFARFNVVASNLVSFYTCCG 76
Query: 128 NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMH-IQGLKQN-IFVIPSV 185
+ HAR LFD+IP TN+ RWIAL G+ AR G++ A+ VF EM +QGL N +FVIPSV
Sbjct: 77 QLSHARKLFDKIPTTNVRRWIALIGSCARCGFYDHALAVFSEMQAVQGLTPNYVFVIPSV 136
Query: 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDI 245
LKACGH+ D TGEKIH +LK SF D+FV SSLI MYSKC VE A+KVFD M KD
Sbjct: 137 LKACGHVGDRITGEKIHGFILKCSFELDSFVSSSLIVMYSKCAKVEDARKVFDGMTVKDT 196
Query: 246 VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQL 305
VA+NA+V+GYVQ+G A EAL LVE + +KPNVVTWN+LISGFS+ GDQ VS++F+L
Sbjct: 197 VALNAVVAGYVQQGAANEALGLVESMKLMGLKPNVVTWNSLISGFSQKGDQGRVSEIFRL 256
Query: 306 MRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365
M A GVEPDVVSWTSVISG V NF N EAFDTFK+MLS GF PTSATIS++LPACA+AA
Sbjct: 257 MIADGVEPDVVSWTSVISGFVQNFRNKEAFDTFKQMLSHGFHPTSATISALLPACATAAR 316
Query: 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425
+ G+EIHG A+V GVEGD++VRSALVDMYAKCGFISEAR LF +M E+NTVTWNS+IFG
Sbjct: 317 VSVGREIHGYALVTGVEGDIYVRSALVDMYAKCGFISEARNLFSRMPEKNTVTWNSIIFG 376
Query: 426 CANHGYCDEAIELFNQMEER--KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM 483
ANHGYC+EAIELFNQME+ KLDHL+FTA LTAC HVG ELGQRLF +MQEKY I
Sbjct: 377 FANHGYCEEAIELFNQMEKEGVAKLDHLTFTAALTACSHVGDFELGQRLFKIMQEKYSIE 436
Query: 484 PRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKH 543
PR EHYACMVDLLGRAG+L EAY MIKTM EPDLFVWGALL AC+NH ++ELAE+AA H
Sbjct: 437 PRLEHYACMVDLLGRAGKLHEAYCMIKTMPIEPDLFVWGALLAACRNHRHVELAEVAAMH 496
Query: 544 LSELEPESAANNMLLTDLYANAG 566
L ELEPESAAN +LL+ +YA+AG
Sbjct: 497 LMELEPESAANPLLLSSVYADAG 519
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449450760|ref|XP_004143130.1| PREDICTED: pentatricopeptide repeat-containing protein At5g59600-like [Cucumis sativus] gi|449496662|ref|XP_004160192.1| PREDICTED: pentatricopeptide repeat-containing protein At5g59600-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/510 (63%), Positives = 401/510 (78%), Gaps = 2/510 (0%)
Query: 59 IFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATK 118
+F+ A + P I R F S Y E IE R+R L G+ LHA+LI+ G ARLT A K
Sbjct: 9 VFLRAPNRFPAILRGFCSSSDGYIELIETCGRNRDLNFGRSLHARLIIDGSARLTHFAAK 68
Query: 119 LITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQN 178
I FY C I AR+LFD+IP+TN RWI L GAY+R GY+ EA++VF E+ GL+ +
Sbjct: 69 FIAFYAACGKIKDARILFDKIPRTNPRRWIVLIGAYSRCGYYPEALSVFCELQRGGLRPS 128
Query: 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFD 238
++IPSVLKACGHLS+ TG K+H+L+LK+S +DA+V S+LIDMY+K G VEKA++VF+
Sbjct: 129 EYIIPSVLKACGHLSEKTTGRKLHTLILKNSLESDAYVCSALIDMYAKSGEVEKARRVFE 188
Query: 239 EMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVM 298
M KD+VA+NAMVSGY GLA EALNLVEE+ +KPN+VTWNTL++GFS+ G++ M
Sbjct: 189 SMAGKDLVALNAMVSGYAHHGLAEEALNLVEEMQVLGIKPNLVTWNTLVTGFSQIGEEEM 248
Query: 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358
V +LF+ M A G+EPDVVSWTSVISG V NF N+EAFDTF+ ML+ GF PTSATISS+LP
Sbjct: 249 VRELFKEMEANGIEPDVVSWTSVISGFVQNFRNEEAFDTFRRMLNAGFHPTSATISSLLP 308
Query: 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418
ACAS N R GKEIHG ++ +GVE D++VR+ALVDMYAKCG+ EA+ LF +MSERN+ T
Sbjct: 309 ACASVGNGRCGKEIHGHSLALGVEKDVYVRTALVDMYAKCGYFYEAKILFWRMSERNSAT 368
Query: 419 WNSMIFGCANHGYCDEAIELFNQM--EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476
WNSMIFG ANHGYC+EAIELF+QM ++ KKLDHL+FTA+LTAC H GLV+LG+ LF +M
Sbjct: 369 WNSMIFGYANHGYCNEAIELFHQMKDDDEKKLDHLTFTAILTACAHAGLVDLGRSLFQLM 428
Query: 477 QEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIEL 536
Q KY I+PR EHYACMVD+ GRAG+LAEAY++IKTM +PDL+VWGALLGAC+ HG IEL
Sbjct: 429 QSKYGIVPRVEHYACMVDVFGRAGKLAEAYDLIKTMPVKPDLYVWGALLGACRKHGEIEL 488
Query: 537 AEIAAKHLSELEPESAANNMLLTDLYANAG 566
AE AAKHLSELEP S N++LL+D+YANAG
Sbjct: 489 AEEAAKHLSELEPGSVGNSLLLSDIYANAG 518
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255559020|ref|XP_002520533.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223540375|gb|EEF41946.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/516 (63%), Positives = 399/516 (77%), Gaps = 4/516 (0%)
Query: 55 LINGI-FIEAHYKMPIISRSFHLSPA-AYSERIEIYIRDRALQSGKILHAQLIVSGLARL 112
+I GI F H+K+PII RSF S + E I+ Y RD AL GK LHA+LIVSGLA
Sbjct: 4 VIRGITFHGPHFKIPIIYRSFQSSSLHTFDELIKTYTRDHALNQGKHLHARLIVSGLASS 63
Query: 113 TQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHI 172
A+KLI+FYTE + + R LFD IPK N ++ L GAY+R G++Q+ + VF EM
Sbjct: 64 NNFASKLISFYTETRQLSIVRKLFDRIPKPNFYQRTVLIGAYSRHGFYQDVLDVFSEMQN 123
Query: 173 QGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK 232
+ L+ N FVIPSVL+ACGH+ D+ TG+ +HS++L+H F +D V ++LIDMYS+C VEK
Sbjct: 124 ERLRPNKFVIPSVLRACGHVFDLQTGKILHSVILRHLFESDVVVNTALIDMYSRCRHVEK 183
Query: 233 AKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK 292
A+KVFD M EKD+VA+NAMV GY Q G A E LVE++ +KPN+VTWNTLISGF++
Sbjct: 184 ARKVFDGMQEKDLVALNAMVLGYAQNGFAKEGFLLVEQMQMLDIKPNLVTWNTLISGFAQ 243
Query: 293 SGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352
+GD+VMV +LF LM G EPDV+SWTSVIS V N N+ AF FK+ML G P SAT
Sbjct: 244 AGDKVMVQELFGLMSMHGFEPDVISWTSVISRFVQNSHNEAAFAAFKQMLQHGAYPNSAT 303
Query: 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS 412
ISS+LPACAS AN+R G+E+HG A +GVE D++VRSA+VDMY+KCG ISEAR LF KM
Sbjct: 304 ISSLLPACASLANVRHGRELHGYAFAIGVEEDIYVRSAIVDMYSKCGLISEARMLFSKMP 363
Query: 413 ERNTVTWNSMIFGCANHGYCDEAIELFNQME--ERKKLDHLSFTAVLTACCHVGLVELGQ 470
ER+TVTWNSMIFG ANHGYCDEAIELFNQME E KK+DHLSFTAVLTAC H LVELGQ
Sbjct: 364 ERHTVTWNSMIFGYANHGYCDEAIELFNQMEKTEAKKIDHLSFTAVLTACSHGRLVELGQ 423
Query: 471 RLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKN 530
LF +M EKYKI+PR EHYACM+DLLGRAG+L+EAY+MIKTM EPDLFVWGALLGAC+
Sbjct: 424 SLFLLMHEKYKIVPRLEHYACMIDLLGRAGKLSEAYDMIKTMPVEPDLFVWGALLGACRQ 483
Query: 531 HGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
HG I+LAEIAA+HL+ELEP +A NNMLL++LYA+AG
Sbjct: 484 HGEIDLAEIAARHLAELEPRNAGNNMLLSNLYADAG 519
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357472867|ref|XP_003606718.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355507773|gb|AES88915.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/493 (66%), Positives = 384/493 (77%), Gaps = 4/493 (0%)
Query: 78 PAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFD 137
P +Y++ IE Y R+LQ GK LHA L +G R IA+ LIT YT C + AR LFD
Sbjct: 29 PESYAKLIETYTHSRSLQQGKKLHALLTTNGYVRFNLIASNLITLYTTCGQLSIARKLFD 88
Query: 138 EIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMH-IQGLKQN-IFVIPSVLKACGHLSDI 195
+IP+TNIHRWIAL AR G+H A+ VF EM + K N +FVIPSVLKACGH+ D
Sbjct: 89 KIPQTNIHRWIALIATCARCGFHDHALEVFSEMQTLNDQKSNSVFVIPSVLKACGHVGDR 148
Query: 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY 255
GE++H LVLK SF DAFV S+LI MYSKCG V A+KVFD MV KD+VAMNA+VSGY
Sbjct: 149 IYGEQVHCLVLKCSFEIDAFVSSALIVMYSKCGEVRDARKVFDGMVVKDLVAMNAVVSGY 208
Query: 256 VQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV 315
Q+GL EAL+LVE + V PNVVTWN LISGF++ D+ MVS++F+LM VEPDV
Sbjct: 209 AQQGLPNEALSLVENMKLMGVNPNVVTWNALISGFAQKCDREMVSEIFRLMNEDRVEPDV 268
Query: 316 VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGC 375
VSWTSV+SG V NF N+EAFD FK+ML GFCPTSATIS++LPACA+ A +R GKEIHG
Sbjct: 269 VSWTSVLSGFVQNFRNEEAFDAFKKMLLLGFCPTSATISALLPACATEARVRFGKEIHGY 328
Query: 376 AIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEA 435
A+V+GVE DL+VRSALVDMYAKCGFISEARTLF KM E+NTVT NSMIFG ANHG C+EA
Sbjct: 329 ALVIGVEDDLYVRSALVDMYAKCGFISEARTLFYKMPEKNTVTMNSMIFGYANHGCCEEA 388
Query: 436 IELFNQMEER--KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV 493
IELFNQME KLDHL+FTA LTAC HVG +ELGQRLF +MQEKY I PR EHYACMV
Sbjct: 389 IELFNQMEMEGVPKLDHLTFTAALTACSHVGDIELGQRLFKIMQEKYCIEPRLEHYACMV 448
Query: 494 DLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAA 553
DL GRAG+L EAY +IK+M +PDLFVWGALL AC+NHG++ELAE+AAKHLSELEPESA
Sbjct: 449 DLFGRAGKLEEAYGIIKSMPVKPDLFVWGALLAACRNHGHVELAEVAAKHLSELEPESAG 508
Query: 554 NNMLLTDLYANAG 566
N +LL+ LYA+AG
Sbjct: 509 NRLLLSSLYADAG 521
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297796913|ref|XP_002866341.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297312176|gb|EFH42600.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust.
Identities = 296/492 (60%), Positives = 378/492 (76%), Gaps = 1/492 (0%)
Query: 76 LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARML 135
LS +Y E IE RDR L G +LHA L+ SG+ARLT+IA KL++FY EC + AR +
Sbjct: 14 LSIGSYVELIEANSRDRLLCGGIVLHAHLVTSGIARLTRIAAKLVSFYVECGKVLDARKV 73
Query: 136 FDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI 195
FDE+PK +I W+ + GA AR GY+QE++ +F EM+ +GLK ++F++PS+LKA +L D
Sbjct: 74 FDEMPKRDISGWVVMIGACARYGYYQESLDIFREMNKEGLKLDVFIVPSLLKASRNLLDR 133
Query: 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGY 255
G+ IH LVLK SF +DAF+VSSLIDMYSK G V A+KVFD++ E+D+V NAM+SGY
Sbjct: 134 EFGKMIHCLVLKCSFESDAFIVSSLIDMYSKFGEVVNARKVFDDLGEQDLVVFNAMISGY 193
Query: 256 VQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV 315
A EALNLV+++ +KP+++TWN LISGFS G++ VS++ +LM G PDV
Sbjct: 194 ANNSQADEALNLVKDMKLLGIKPDIITWNALISGFSHMGNEEKVSEILELMCLDGYMPDV 253
Query: 316 VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGC 375
VSWTS+ISGLVHNF N++AFD FK+ML+ G P SATI+++LPAC + ANM+ GKEIHG
Sbjct: 254 VSWTSIISGLVHNFQNEKAFDAFKQMLTHGLYPNSATITTLLPACTTLANMKHGKEIHGY 313
Query: 376 AIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEA 435
++V G+E VRSAL+DMY KCGFISEA LF K ++ TVT+NSMIF ANHG D+A
Sbjct: 314 SVVTGLEDHGFVRSALLDMYGKCGFISEAMILFRKTPKKTTVTFNSMIFCYANHGLSDKA 373
Query: 436 IELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVD 494
+ELF+QME +KLDHL+FTA+LTAC H GL +LGQ LF++MQ KY+I PR EHYACMVD
Sbjct: 374 VELFDQMEATGEKLDHLTFTAILTACSHAGLTDLGQNLFHLMQTKYRIEPRLEHYACMVD 433
Query: 495 LLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAAN 554
LLGRAG+L EAYEM+KTM EPDLFVWGALLGAC+NHGN+ELA IAAK L+ELEPE++ N
Sbjct: 434 LLGRAGKLVEAYEMMKTMRMEPDLFVWGALLGACRNHGNMELARIAAKRLAELEPENSGN 493
Query: 555 NMLLTDLYANAG 566
+LLT LYA+ G
Sbjct: 494 GLLLTSLYADVG 505
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15238469|ref|NP_200768.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75170472|sp|Q9FGR2.1|PP436_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g59600 gi|10177776|dbj|BAB11040.1| unnamed protein product [Arabidopsis thaliana] gi|71143062|gb|AAZ23922.1| At5g59600 [Arabidopsis thaliana] gi|332009827|gb|AED97210.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust.
Identities = 298/503 (59%), Positives = 377/503 (74%), Gaps = 2/503 (0%)
Query: 66 KMPIISRSFHL-SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYT 124
K+ I+ SF L S +Y E IE RDR G++LHA L+ SG+ARLT+IA KL+TFY
Sbjct: 3 KLTIVPSSFRLLSIGSYVELIEANGRDRLFCRGRVLHAHLVTSGIARLTRIAAKLVTFYV 62
Query: 125 ECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPS 184
EC + AR +FDE+PK +I + + GA AR GY+QE++ F EM+ GLK + F++PS
Sbjct: 63 ECGKVLDARKVFDEMPKRDISGCVVMIGACARNGYYQESLDFFREMYKDGLKLDAFIVPS 122
Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
+LKA +L D G+ IH LVLK S+ +DAF+VSSLIDMYSK G V A+KVF ++ E+D
Sbjct: 123 LLKASRNLLDREFGKMIHCLVLKFSYESDAFIVSSLIDMYSKFGEVGNARKVFSDLGEQD 182
Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
+V NAM+SGY A EALNLV+++ +KP+V+TWN LISGFS ++ VS++ +
Sbjct: 183 LVVFNAMISGYANNSQADEALNLVKDMKLLGIKPDVITWNALISGFSHMRNEEKVSEILE 242
Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
LM G +PDVVSWTS+ISGLVHNF N++AFD FK+ML+ G P SATI ++LPAC + A
Sbjct: 243 LMCLDGYKPDVVSWTSIISGLVHNFQNEKAFDAFKQMLTHGLYPNSATIITLLPACTTLA 302
Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
M+ GKEIHG ++V G+E VRSAL+DMY KCGFISEA LF K ++ TVT+NSMIF
Sbjct: 303 YMKHGKEIHGYSVVTGLEDHGFVRSALLDMYGKCGFISEAMILFRKTPKKTTVTFNSMIF 362
Query: 425 GCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM 483
ANHG D+A+ELF+QME +KLDHL+FTA+LTAC H GL +LGQ LF +MQ KY+I+
Sbjct: 363 CYANHGLADKAVELFDQMEATGEKLDHLTFTAILTACSHAGLTDLGQNLFLLMQNKYRIV 422
Query: 484 PRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKH 543
PR EHYACMVDLLGRAG+L EAYEMIK M EPDLFVWGALL AC+NHGN+ELA IAAKH
Sbjct: 423 PRLEHYACMVDLLGRAGKLVEAYEMIKAMRMEPDLFVWGALLAACRNHGNMELARIAAKH 482
Query: 544 LSELEPESAANNMLLTDLYANAG 566
L+ELEPE++ N +LLT LYANAG
Sbjct: 483 LAELEPENSGNGLLLTSLYANAG 505
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224054634|ref|XP_002298341.1| predicted protein [Populus trichocarpa] gi|222845599|gb|EEE83146.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust.
Identities = 277/399 (69%), Positives = 334/399 (83%), Gaps = 2/399 (0%)
Query: 170 MHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS 229
M QGL N FVIPSVLK CGH+ D+ TG +HS++LK+S +D +V+SSLIDMYSKCG
Sbjct: 1 MQKQGLGANKFVIPSVLKCCGHVYDVQTGRILHSVILKYSIESDVYVISSLIDMYSKCGE 60
Query: 230 VEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISG 289
VEKA++VFD MVEKD+VA+NAM+SGY Q G A E L++++ +KPNV+TWN+LISG
Sbjct: 61 VEKARRVFDRMVEKDLVALNAMLSGYGQHGFAKEGFALMDKMEKLGIKPNVITWNSLISG 120
Query: 290 FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPT 349
F++ GD MVSK+F+LM + GVEPDV+SWTSVISGLV NF N+ AFD FK+ML +GF PT
Sbjct: 121 FAQKGDDAMVSKMFELMISNGVEPDVISWTSVISGLVQNFRNEAAFDAFKQMLGRGFLPT 180
Query: 350 SATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD 409
SATIS++L ACA+ AN+RRG+EIHG A+V+ VE D++VRSALVDMYAKCGFISEA LF
Sbjct: 181 SATISTVLAACATMANVRRGREIHGYAVVIRVEDDIYVRSALVDMYAKCGFISEASVLFY 240
Query: 410 KMSERNTVTWNSMIFGCANHGYCDEAIELFNQME--ERKKLDHLSFTAVLTACCHVGLVE 467
M ERNTVTWNSMIFG ANHGYCDEAIELF+QME E KLDHL+FTAVLTAC H G+VE
Sbjct: 241 MMPERNTVTWNSMIFGYANHGYCDEAIELFDQMEKSEGNKLDHLTFTAVLTACSHAGMVE 300
Query: 468 LGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGA 527
GQ LF +MQ+KYKI+PR EHYACMVDLLGRAG L EAY+MIK M +PDLFVWGALLGA
Sbjct: 301 HGQSLFLLMQQKYKIVPRLEHYACMVDLLGRAGNLNEAYDMIKKMPVKPDLFVWGALLGA 360
Query: 528 CKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
C+NHG+I LAE+AA+HL+ELEPE+A NNML+++LYA+AG
Sbjct: 361 CRNHGDIGLAEVAARHLAELEPENAGNNMLMSNLYADAG 399
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357120134|ref|XP_003561784.1| PREDICTED: pentatricopeptide repeat-containing protein At5g59600-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 221/430 (51%), Positives = 300/430 (69%), Gaps = 10/430 (2%)
Query: 147 WIALTGAYARRGYHQEAVTVFH-----EMHIQG-LKQNIFVIPSVLKACGHLSDIGTGEK 200
W+ + +R+GYH A+ +F + I+G + +P+ L+AC HL+D +G
Sbjct: 8 WMKQLMSSSRQGYHGLALRLFFTRLSLQASIRGTVDPYPAAVPTALRACAHLADAASGRL 67
Query: 201 IHSLV-LKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG 259
IH+LV + + +D V ++L+DMY+KCG V A+KVFDEM +D+V NA+++GY + G
Sbjct: 68 IHALVQTRPALASDEVVSTALLDMYAKCGLVYSARKVFDEMPVRDLVVWNALLAGYARHG 127
Query: 260 LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWT 319
L AL L ++ + P++VTWN +SGF+ +GD M S L M+ G++PDVV+WT
Sbjct: 128 LPEHALALAVKMRGLGLNPDLVTWNAAVSGFAMAGDDGMASDLVCAMQEDGLQPDVVTWT 187
Query: 320 SVISGLVHNFCNDEAFDTFKEMLSQG--FCPTSATISSILPACASAANMRRGKEIHGCAI 377
S++SG V NF A FK M++ G P+SATISSILPA A+ +M+ GKEIHG A+
Sbjct: 188 SLVSGSVLNFQYGRARTLFKGMVAGGARVRPSSATISSILPAFATVGDMKHGKEIHGYAV 247
Query: 378 VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIE 437
V GVE +L VRS+L+DMY KCG + EAR LFD M+ER+TVTWNSMIFG AN+G+C EA+
Sbjct: 248 VTGVEQELTVRSSLIDMYTKCGLVHEARHLFDNMAERSTVTWNSMIFGLANYGHCGEAVG 307
Query: 438 LFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496
LF+ M E K DHL+FTAVLTAC + G+VE G+ L+ +MQE+Y + PR EHYACMV LL
Sbjct: 308 LFDWMLREGAKPDHLTFTAVLTACSYGGMVEKGKGLYRVMQEEYGMEPRLEHYACMVHLL 367
Query: 497 GRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNM 556
GRAGRLAEA+ IK M EPD FVWGALLGAC++HGN+ELAE+AA L +EP +AA+ +
Sbjct: 368 GRAGRLAEAHVFIKAMPVEPDRFVWGALLGACRSHGNVELAEMAASRLLTVEPGNAASYL 427
Query: 557 LLTDLYANAG 566
LL+ A+AG
Sbjct: 428 LLSGALASAG 437
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 566 | ||||||
| TAIR|locus:2148393 | 534 | AT5G59600 "AT5G59600" [Arabido | 0.885 | 0.938 | 0.592 | 5.5e-157 | |
| TAIR|locus:2141171 | 857 | AT4G21300 [Arabidopsis thalian | 0.487 | 0.322 | 0.411 | 3e-81 | |
| TAIR|locus:2057630 | 727 | AT2G33680 "AT2G33680" [Arabido | 0.600 | 0.467 | 0.342 | 3.2e-77 | |
| TAIR|locus:2013079 | 894 | AT1G19720 "AT1G19720" [Arabido | 0.743 | 0.470 | 0.366 | 4.3e-77 | |
| TAIR|locus:2198546 | 760 | AT1G20230 "AT1G20230" [Arabido | 0.823 | 0.613 | 0.364 | 1.3e-75 | |
| TAIR|locus:505006130 | 970 | AT1G18485 [Arabidopsis thalian | 0.491 | 0.286 | 0.369 | 6.5e-74 | |
| TAIR|locus:2017744 | 703 | AT1G22830 [Arabidopsis thalian | 0.491 | 0.395 | 0.397 | 8.9e-74 | |
| TAIR|locus:2083961 | 768 | AT3G53360 "AT3G53360" [Arabido | 0.593 | 0.437 | 0.319 | 1.9e-73 | |
| TAIR|locus:2019160 | 643 | AT1G74630 [Arabidopsis thalian | 0.756 | 0.665 | 0.371 | 7.5e-73 | |
| TAIR|locus:2162207 | 830 | CRR21 "chlororespiratory reduc | 0.833 | 0.568 | 0.321 | 1.2e-72 |
| TAIR|locus:2148393 AT5G59600 "AT5G59600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1530 (543.6 bits), Expect = 5.5e-157, P = 5.5e-157
Identities = 298/503 (59%), Positives = 377/503 (74%)
Query: 66 KMPIISRSFHL-SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYT 124
K+ I+ SF L S +Y E IE RDR G++LHA L+ SG+ARLT+IA KL+TFY
Sbjct: 3 KLTIVPSSFRLLSIGSYVELIEANGRDRLFCRGRVLHAHLVTSGIARLTRIAAKLVTFYV 62
Query: 125 ECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPS 184
EC + AR +FDE+PK +I + + GA AR GY+QE++ F EM+ GLK + F++PS
Sbjct: 63 ECGKVLDARKVFDEMPKRDISGCVVMIGACARNGYYQESLDFFREMYKDGLKLDAFIVPS 122
Query: 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD 244
+LKA +L D G+ IH LVLK S+ +DAF+VSSLIDMYSK G V A+KVF ++ E+D
Sbjct: 123 LLKASRNLLDREFGKMIHCLVLKFSYESDAFIVSSLIDMYSKFGEVGNARKVFSDLGEQD 182
Query: 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304
+V NAM+SGY A EALNLV+++ +KP+V+TWN LISGFS ++ VS++ +
Sbjct: 183 LVVFNAMISGYANNSQADEALNLVKDMKLLGIKPDVITWNALISGFSHMRNEEKVSEILE 242
Query: 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364
LM G +PDVVSWTS+ISGLVHNF N++AFD FK+ML+ G P SATI ++LPAC + A
Sbjct: 243 LMCLDGYKPDVVSWTSIISGLVHNFQNEKAFDAFKQMLTHGLYPNSATIITLLPACTTLA 302
Query: 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIF 424
M+ GKEIHG ++V G+E VRSAL+DMY KCGFISEA LF K ++ TVT+NSMIF
Sbjct: 303 YMKHGKEIHGYSVVTGLEDHGFVRSALLDMYGKCGFISEAMILFRKTPKKTTVTFNSMIF 362
Query: 425 GCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM 483
ANHG D+A+ELF+QME +KLDHL+FTA+LTAC H GL +LGQ LF +MQ KY+I+
Sbjct: 363 CYANHGLADKAVELFDQMEATGEKLDHLTFTAILTACSHAGLTDLGQNLFLLMQNKYRIV 422
Query: 484 PRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKH 543
PR EHYACMVDLLGRAG+L EAYEMIK M EPDLFVWGALL AC+NHGN+ELA IAAKH
Sbjct: 423 PRLEHYACMVDLLGRAGKLVEAYEMIKAMRMEPDLFVWGALLAACRNHGNMELARIAAKH 482
Query: 544 LSELEPESAANNMLLTDLYANAG 566
L+ELEPE++ N +LLT LYANAG
Sbjct: 483 LAELEPENSGNGLLLTSLYANAG 505
|
|
| TAIR|locus:2141171 AT4G21300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 597 (215.2 bits), Expect = 3.0e-81, Sum P(2) = 3.0e-81
Identities = 116/282 (41%), Positives = 175/282 (62%)
Query: 286 LISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG 345
+I ++K G + ++F+ + + D+VSW S+I+ + A D F++M G
Sbjct: 482 VIDMYAKCGRMNLAYEIFERLSKR----DIVSWNSMITRCAQSDNPSAAIDIFRQMGVSG 537
Query: 346 FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR 405
C +IS+ L ACA+ + GK IHG I + D++ S L+DMYAKCG + A
Sbjct: 538 ICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAM 597
Query: 406 TLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTACCHV 463
+F M E+N V+WNS+I C NHG +++ LF++M E+ + D ++F ++++CCHV
Sbjct: 598 NVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHV 657
Query: 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGA 523
G V+ G R F M E Y I P+ EHYAC+VDL GRAGRL EAYE +K+M PD VWG
Sbjct: 658 GDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGT 717
Query: 524 LLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565
LLGAC+ H N+ELAE+A+ L +L+P ++ +L+++ +ANA
Sbjct: 718 LLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANA 759
|
|
| TAIR|locus:2057630 AT2G33680 "AT2G33680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 535 (193.4 bits), Expect = 3.2e-77, Sum P(2) = 3.2e-77
Identities = 123/359 (34%), Positives = 195/359 (54%)
Query: 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSG---------YVQRGLATEALNLV 268
S+++ YS+ G +A K+F M I + G Y++ G + L
Sbjct: 291 SAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLL- 349
Query: 269 EEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHN 328
++G R ++ L+ ++K+G K F ++ E DV WTS+ISG V N
Sbjct: 350 -KLGFER---HLFATTALVDMYAKAGCLADARKGFDCLQ----ERDVALWTSLISGYVQN 401
Query: 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388
N+EA ++ M + G P T++S+L AC+S A + GK++HG I G ++ +
Sbjct: 402 SDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIG 461
Query: 389 SALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQM-EERKK 447
SAL MY+KCG + + +F + ++ V+WN+MI G +++G DEA+ELF +M E +
Sbjct: 462 SALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGME 521
Query: 448 LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYE 507
D ++F +++AC H G VE G FNMM ++ + P+ +HYACMVDLL RAG+L EA E
Sbjct: 522 PDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKE 581
Query: 508 MIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
I++ + + L +W LL ACKNHG EL A + L L ++ + L+ +Y G
Sbjct: 582 FIESANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMALGSRESSTYVQLSGIYTALG 640
|
|
| TAIR|locus:2013079 AT1G19720 "AT1G19720" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
Identities = 155/423 (36%), Positives = 247/423 (58%)
Query: 143 NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIH 202
++ W A+ G +A+ +F +M + G+ N I S + AC L I G ++H
Sbjct: 316 DVFTWTAMISGLIHNGMRYQALDMFRKMFLAGVVPNAVTIMSAVSACSCLKVINQGSEVH 375
Query: 203 SLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLAT 262
S+ +K F D V +SL+DMYSKCG +E A+KVFD + KD+ N+M++GY Q G
Sbjct: 376 SIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNKDVYTWNSMITGYCQAGYCG 435
Query: 263 EALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG-VEPDVVSWTSV 321
+A L + ++PN++TWNT+ISG+ K+GD+ LFQ M G V+ + +W +
Sbjct: 436 KAYELFTRMQDANLRPNIITWNTMISGYIKNGDEGEAMDLFQRMEKDGKVQRNTATWNLI 495
Query: 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV 381
I+G + N DEA + F++M F P S TI S+LPACA+ + +EIHGC + +
Sbjct: 496 IAGYIQNGKKDEALELFRKMQFSRFMPNSVTILSLLPACANLLGAKMVREIHGCVLRRNL 555
Query: 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441
+ V++AL D YAK G I +RT+F M ++ +TWNS+I G HG A+ LFNQ
Sbjct: 556 DAIHAVKNALTDTYAKSGDIEYSRTIFLGMETKDIITWNSLIGGYVLHGSYGPALALFNQ 615
Query: 442 MEERKKLDHL-SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500
M+ + + + ++++ A +G V+ G+++F + Y I+P EH + MV L GRA
Sbjct: 616 MKTQGITPNRGTLSSIILAHGLMGNVDEGKKVFYSIANDYHIIPALEHCSAMVYLYGRAN 675
Query: 501 RLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTD 560
RL EA + I+ M+ + + +W + L C+ HG+I++A AA++L LEPE+ A +++
Sbjct: 676 RLEEALQFIQEMNIQSETPIWESFLTGCRIHGDIDMAIHAAENLFSLEPENTATESIVSQ 735
Query: 561 LYA 563
+YA
Sbjct: 736 IYA 738
|
|
| TAIR|locus:2198546 AT1G20230 "AT1G20230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
Identities = 176/483 (36%), Positives = 268/483 (55%)
Query: 93 ALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152
A + GK +H VSGL + + Y C + AR +FD + ++ AL
Sbjct: 131 AFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLC 190
Query: 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACG----HLSDIGTGEKIHSLVLKH 208
AYAR+G +E V + EM G++ NI +L H + +KIH L
Sbjct: 191 AYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHL---- 246
Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE----KDIVAMNAMVSGYVQRGLATEA 264
F D VSS++ + + + +++ KD ++AM+ Y + G
Sbjct: 247 GFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGI 306
Query: 265 LNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISG 324
++L + ++ V N I+G S++G ++F+L + + +E +VVSWTS+I+G
Sbjct: 307 ISLFNQF--EMMEAGVC--NAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAG 362
Query: 325 LVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGD 384
N + EA + F+EM G P TI S+LPAC + A + G+ HG A+ + + +
Sbjct: 363 CAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDN 422
Query: 385 LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ-ME 443
+HV SAL+DMYAKCG I+ ++ +F+ M +N V WNS++ G + HG E + +F M
Sbjct: 423 VHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMR 482
Query: 444 ERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLA 503
R K D +SFT++L+AC VGL + G + F MM E+Y I PR EHY+CMV+LLGRAG+L
Sbjct: 483 TRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQ 542
Query: 504 EAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563
EAY++IK M EPD VWGALL +C+ N++LAEIAA+ L LEPE+ +LL+++YA
Sbjct: 543 EAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYA 602
Query: 564 NAG 566
G
Sbjct: 603 AKG 605
|
|
| TAIR|locus:505006130 AT1G18485 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 510 (184.6 bits), Expect = 6.5e-74, Sum P(2) = 6.5e-74
Identities = 105/284 (36%), Positives = 167/284 (58%)
Query: 285 TLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ 344
+++S + G+ V LF M K + VSW +VI+G + N D A F++M+
Sbjct: 536 SVLSLYIHCGELCTVQALFDAMEDKSL----VSWNTVITGYLQNGFPDRALGVFRQMVLY 591
Query: 345 GFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEA 404
G ++ + AC+ ++R G+E H A+ +E D + +L+DMYAK G I+++
Sbjct: 592 GIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQS 651
Query: 405 RTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHV 463
+F+ + E++T +WN+MI G HG EAI+LF +M+ D L+F VLTAC H
Sbjct: 652 SKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHS 711
Query: 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI-KTMSTEPDLFVWG 522
GL+ G R + M+ + + P +HYAC++D+LGRAG+L +A ++ + MS E D+ +W
Sbjct: 712 GLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWK 771
Query: 523 ALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
+LL +C+ H N+E+ E A L ELEPE N +LL++LYA G
Sbjct: 772 SLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLG 815
|
|
| TAIR|locus:2017744 AT1G22830 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 463 (168.0 bits), Expect = 8.9e-74, Sum P(2) = 8.9e-74
Identities = 114/287 (39%), Positives = 159/287 (55%)
Query: 284 NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLS 343
N+LI+ +S+ D +FQ + A + +W S+ISG +N ++E KEML
Sbjct: 361 NSLITMYSRCSDLRHAFIVFQQVEANSLS----TWNSIISGFAYNERSEETSFLLKEMLL 416
Query: 344 QGFCPTSATISSILPACASAANMRRGKEIHGCAIV--MGVEGDLHVRSALVDMYAKCGFI 401
GF P T++SILP A N++ GKE H C I+ + L + ++LVDMYAK G I
Sbjct: 417 SGFHPNHITLASILPLFARVGNLQHGKEFH-CYILRRQSYKDCLILWNSLVDMYAKSGEI 475
Query: 402 SEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTAC 460
A+ +FD M +R+ VT+ S+I G G + A+ F M+ K DH++ AVL+AC
Sbjct: 476 IAAKRVFDSMRKRDKVTYTSLIDGYGRLGKGEVALAWFKDMDRSGIKPDHVTMVAVLSAC 535
Query: 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFV 520
H LV G LF M+ + I R EHY+CMVDL RAG L +A ++ T+ EP +
Sbjct: 536 SHSNLVREGHWLFTKMEHVFGIRLRLEHYSCMVDLYCRAGYLDKARDIFHTIPYEPSSAM 595
Query: 521 WGALLGACKNHGNIELAEIAA-KHLSELEPESAANNMLLTDLYANAG 566
LL AC HGN + E AA K L E +PE + MLL D+YA G
Sbjct: 596 CATLLKACLIHGNTNIGEWAADKLLLETKPEHLGHYMLLADMYAVTG 642
|
|
| TAIR|locus:2083961 AT3G53360 "AT3G53360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 522 (188.8 bits), Expect = 1.9e-73, Sum P(2) = 1.9e-73
Identities = 110/344 (31%), Positives = 195/344 (56%)
Query: 228 GSVEKAKKVFDEMVEK----DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW 283
G ++A VF +M D +++ +++ + ++ + + I ++
Sbjct: 350 GYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVC 409
Query: 284 NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLS 343
N+L++ ++ D LF+ R D VSW ++++ + + E FK ML
Sbjct: 410 NSLLTMYTFCSDLYCCFNLFEDFRNNA---DSVSWNTILTACLQHEQPVEMLRLFKLMLV 466
Query: 344 QGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISE 403
P T+ ++L C ++++ G ++H ++ G+ + +++ L+DMYAKCG + +
Sbjct: 467 SECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQ 526
Query: 404 ARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCH 462
AR +FD M R+ V+W+++I G A G+ +EA+ LF +M+ + +H++F VLTAC H
Sbjct: 527 ARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSH 586
Query: 463 VGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWG 522
VGLVE G +L+ MQ ++ I P EH +C+VDLL RAGRL EA I M EPD+ VW
Sbjct: 587 VGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWK 646
Query: 523 ALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
LL ACK GN+ LA+ AA+++ +++P ++ ++LL ++A++G
Sbjct: 647 TLLSACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSG 690
|
|
| TAIR|locus:2019160 AT1G74630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
Identities = 163/439 (37%), Positives = 247/439 (56%)
Query: 131 HARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK-QNIFVIPSVLKAC 189
+AR L P+ + + L Y+ +V VF EM +G + F V+KA
Sbjct: 57 YARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAV 116
Query: 190 GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMN 249
+ + TG ++H LKH + FV ++LI MY CG VE A+KVFDEM + ++VA N
Sbjct: 117 ENFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWN 176
Query: 250 AMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK 309
A+++ RG EI + N +WN +++G+ K+G+ ++F M +
Sbjct: 177 AVITACF-RGNDVAG---AREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHR 232
Query: 310 GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRG 369
D VSW+++I G+ HN +E+F F+E+ G P +++ +L AC+ + + G
Sbjct: 233 ----DDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFG 288
Query: 370 KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT-VTWNSMIFGCAN 428
K +HG G + V +AL+DMY++CG + AR +F+ M E+ V+W SMI G A
Sbjct: 289 KILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAM 348
Query: 429 HGYCDEAIELFNQMEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTE 487
HG +EA+ LFN+M D +SF ++L AC H GL+E G+ F+ M+ Y I P E
Sbjct: 349 HGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIE 408
Query: 488 HYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSEL 547
HY CMVDL GR+G+L +AY+ I M P VW LLGAC +HGNIELAE + L+EL
Sbjct: 409 HYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNEL 468
Query: 548 EPESAANNMLLTDLYANAG 566
+P ++ + +LL++ YA AG
Sbjct: 469 DPNNSGDLVLLSNAYATAG 487
|
|
| TAIR|locus:2162207 CRR21 "chlororespiratory reduction 21" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
Identities = 153/476 (32%), Positives = 267/476 (56%)
Query: 94 LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
++ GK HA IV+G+ + T L+ FY + I +A M+FD + + ++ W +
Sbjct: 290 VEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIISG 349
Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
Y ++G ++A+ + M ++ LK + + +++ A ++ G+++ ++HSF +D
Sbjct: 350 YVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFESD 409
Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
+ S+++DMY+KCGS+ AKKVFD VEKD++ N +++ Y + GL+ EAL L +
Sbjct: 410 IVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYGMQL 469
Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333
V PNV+TWN +I ++G +F M++ G+ P+++SWT++++G+V N C++E
Sbjct: 470 EGVPPNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPNLISWTTMMNGMVQNGCSEE 529
Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGD--LHVRSAL 391
A ++M G P + +I+ L ACA A++ G+ IHG I+ ++ + + ++L
Sbjct: 530 AILFLRKMQESGLRPNAFSITVALSACAHLASLHIGRTIHGY-IIRNLQHSSLVSIETSL 588
Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEE-RKKLDH 450
VDMYAKCG I++A +F N+MI A +G EAI L+ +E K D+
Sbjct: 589 VDMYAKCGDINKAEKVFGSKLYSELPLSNAMISAYALYGNLKEAIALYRSLEGVGLKPDN 648
Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510
++ T VL+AC H G + +F + K + P EHY MVDLL AG +A +I+
Sbjct: 649 ITITNVLSACNHAGDINQAIEIFTDIVSKRSMKPCLEHYGLMVDLLASAGETEKALRLIE 708
Query: 511 TMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566
M +PD + +L+ +C EL + ++ L E EPE++ N + +++ YA G
Sbjct: 709 EMPFKPDARMIQSLVASCNKQRKTELVDYLSRKLLESEPENSGNYVTISNAYAVEG 764
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FGR2 | PP436_ARATH | No assigned EC number | 0.5924 | 0.8851 | 0.9382 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 566 | |||
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-76 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-56 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-49 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-40 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-35 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-19 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-19 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-13 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 6e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 255 bits (654), Expect = 1e-76
Identities = 138/446 (30%), Positives = 229/446 (51%), Gaps = 41/446 (9%)
Query: 158 GYHQEAVTVFHEMHIQGLKQNIFVIPS-----VLKACGHLSDIGTGEKIHSLVLKHSFGT 212
G H+EA+ +F + F +P+ +++AC L I + ++ V F
Sbjct: 101 GRHREALELFEILEAGC----PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP 156
Query: 213 DAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLV---- 268
D ++++ ++ M+ KCG + A+++FDEM E+++ + ++ G V G EA L
Sbjct: 157 DQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMW 216
Query: 269 EEIGTPRVKPNVVTWNTLI-SGFSKSGDQV---------------------MVSKLFQLM 306
E+ + VV G +++G Q+ M SK +
Sbjct: 217 EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE 276
Query: 307 RAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
A+ V E V+W S+++G + ++EA + EM G T S ++ +
Sbjct: 277 DARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336
Query: 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421
A + K+ H I G D+ +ALVD+Y+K G + +AR +FD+M +N ++WN+
Sbjct: 337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNA 396
Query: 422 MIFGCANHGYCDEAIELFNQM-EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY 480
+I G NHG +A+E+F +M E +H++F AVL+AC + GL E G +F M E +
Sbjct: 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENH 456
Query: 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIA 540
+I PR HYACM++LLGR G L EAY MI+ +P + +W ALL AC+ H N+EL +A
Sbjct: 457 RIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLA 516
Query: 541 AKHLSELEPESAANNMLLTDLYANAG 566
A+ L + PE N ++L +LY ++G
Sbjct: 517 AEKLYGMGPEKLNNYVVLLNLYNSSG 542
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 202 bits (515), Expect = 3e-56
Identities = 119/466 (25%), Positives = 217/466 (46%), Gaps = 82/466 (17%)
Query: 92 RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALT 151
RA++ G + ++ + S + ++ +++ + + HA +F ++P+ ++ W L
Sbjct: 100 RAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLV 159
Query: 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211
G YA+ GY EA+ ++H M G++ +++ P VL+ CG + D+ G ++H+ V++ F
Sbjct: 160 GGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFE 219
Query: 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI 271
D VV++LI MY KCG V A+ VFD M +D ++ NAM+SGY + G E L
Sbjct: 220 LDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGL------ 273
Query: 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331
+LF MR V+PD+++ TSVIS
Sbjct: 274 -----------------------------ELFFTMRELSVDPDLMTITSVIS-------- 296
Query: 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391
AC + R G+E+HG + G D+ V ++L
Sbjct: 297 ---------------------------ACELLGDERLGREMHGYVVKTGFAVDVSVCNSL 329
Query: 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQME-ERKKLDH 450
+ MY G EA +F +M ++ V+W +MI G +G D+A+E + ME + D
Sbjct: 330 IQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE 389
Query: 451 LSFTAVLTACCHVGLVELGQRLFNMMQEK----YKIMPRTEHYACMVDLLGRAGRLAEAY 506
++ +VL+AC +G +++G +L + + K Y ++ ++++ + + +A
Sbjct: 390 ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA-----LIEMYSKCKCIDKAL 444
Query: 507 EMIKTMSTEPDLFVWGALL-GACKNHGNIELAEIAAKHLSELEPES 551
E+ + E D+ W +++ G N+ E + L L+P S
Sbjct: 445 EVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNS 489
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 182 bits (464), Expect = 3e-49
Identities = 121/451 (26%), Positives = 194/451 (43%), Gaps = 87/451 (19%)
Query: 94 LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGA 153
L G+ +HA ++ G + LIT Y +C ++ AR++FD +P+ + W A+
Sbjct: 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISG 262
Query: 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD 213
Y G E + +F M + ++ I SV+ AC L D G ++H V+K F D
Sbjct: 263 YFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD 322
Query: 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273
V +SLI MY GS +A+KVF M KD V+ AM+SGY + GL +AL
Sbjct: 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKAL-------- 374
Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333
+ + LM V PD +
Sbjct: 375 ---------------------------ETYALMEQDNVSPDEI----------------- 390
Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
TI+S+L ACA ++ G ++H A G+ + V +AL++
Sbjct: 391 ------------------TIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432
Query: 394 MYAKCGFISEARTLFDKMSERNTVTWNSMIFG-CANHGYCDEAIELFNQMEERKKLDHLS 452
MY+KC I +A +F + E++ ++W S+I G N+ C EA+ F QM K + ++
Sbjct: 433 MYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNN-RCFEALIFFRQMLLTLKPNSVT 491
Query: 453 FTAVLTACCHVGLVELGQRLF------NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506
A L+AC +G + G+ + + + + +P ++DL R GR+ A+
Sbjct: 492 LIAALSACARIGALMCGKEIHAHVLRTGIGFDGF--LPNA-----LLDLYVRCGRMNYAW 544
Query: 507 EMIKTMSTEPDLFVWGALLGACKNHGNIELA 537
S E D+ W LL HG +A
Sbjct: 545 NQFN--SHEKDVVSWNILLTGYVAHGKGSMA 573
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 156 bits (395), Expect = 1e-40
Identities = 123/480 (25%), Positives = 211/480 (43%), Gaps = 83/480 (17%)
Query: 73 SFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHA 132
F L + Y +E I ++++ K ++ + SG + +++ + +C + A
Sbjct: 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDA 177
Query: 133 RMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHL 192
R LFDE+P+ N+ W + G G ++EA +F EM G +L+A L
Sbjct: 178 RRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237
Query: 193 SDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMV 252
G+++H VLK D FV +LIDMYSKCG +E A+ VFD M EK VA N+M+
Sbjct: 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSML 297
Query: 253 SGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG------------------ 294
+GY G + EAL L E+ V + T++ +I FS+
Sbjct: 298 AGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP 357
Query: 295 -DQV-------MVSKLFQLMRAKGV-----EPDVVSWTSVISGLVHNFCNDEAFDTFKEM 341
D V + SK ++ A+ V +++SW ++I+G ++ +A + F+ M
Sbjct: 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERM 417
Query: 342 LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFI 401
+++G P T ++L AC + +G EI
Sbjct: 418 IAEGVAPNHVTFLAVLSACRYSGLSEQGWEI----------------------------- 448
Query: 402 SEARTLFDKMSERNTVTWNSMIFGC-----ANHGYCDEAIELFNQMEERKKLDHLSFTAV 456
F MSE + + +M + C G DEA + + + ++ + A+
Sbjct: 449 ------FQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVN--MWAAL 500
Query: 457 LTACCHVGLVELG----QRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512
LTAC +ELG ++L+ M EK +Y +++L +GR AEA ++++T+
Sbjct: 501 LTACRIHKNLELGRLAAEKLYGMGPEK------LNNYVVLLNLYNSSGRQAEAAKVVETL 554
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 9e-35
Identities = 93/370 (25%), Positives = 178/370 (48%), Gaps = 18/370 (4%)
Query: 97 GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYAR 156
G+ LH ++ +G+ T ++ LI Y++C +I AR +FD +P+ W ++ YA
Sbjct: 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYAL 302
Query: 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFV 216
GY +EA+ +++EM G+ + F +++ L+ + ++ H+ +++ F D
Sbjct: 303 HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA 362
Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV 276
++L+D+YSK G +E A+ VFD M K++++ NA+++GY G T+A+ + E + V
Sbjct: 363 NTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGV 422
Query: 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLM-RAKGVEPDVVSWTSVISGLVHNFCNDEAF 335
PN VT+ ++S SG ++FQ M ++P + + +I L DEA+
Sbjct: 423 APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482
Query: 336 DTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395
+ F PT +++L AC N+ G+ MG E L+ L+++Y
Sbjct: 483 AMIRR---APFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE-KLNNYVVLLNLY 538
Query: 396 AKCGFISEARTLFDKMSER-----NTVTW-------NSMIFGCANHGYCDEAIELFNQ-M 442
G +EA + + + + TW +S G H E + ++ M
Sbjct: 539 NSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELM 598
Query: 443 EERKKLDHLS 452
+E + +++
Sbjct: 599 KEISEYGYVA 608
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 90.7 bits (225), Expect = 6e-19
Identities = 88/389 (22%), Positives = 169/389 (43%), Gaps = 53/389 (13%)
Query: 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDI 245
+ C DI ++ LV + D + ++LI +K G V+ +VF EMV
Sbjct: 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV---- 499
Query: 246 VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLF-- 303
+G V+ NV T+ LI G +++G V+K F
Sbjct: 500 ------NAG---------------------VEANVHTFGALIDGCARAGQ---VAKAFGA 529
Query: 304 -QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEML--SQGFCPTSATISSILPAC 360
+MR+K V+PD V + ++IS + D AFD EM + P T+ +++ AC
Sbjct: 530 YGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589
Query: 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWN 420
A+A + R KE++ ++G V + V+ ++ G A +++D M ++ V +
Sbjct: 590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG-VKPD 648
Query: 421 SMIFGC----ANH-GYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFN 474
+ F A H G D+A E+ ++ KL +S+++++ AC + + L+
Sbjct: 649 EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE 708
Query: 475 MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM---IKTMSTEPDLFVWGALLGACKNH 531
++ K+ P ++ L +L +A E+ +K + P+ + LL A +
Sbjct: 709 DIKS-IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767
Query: 532 GNIELAEIAAKHLSELEPESAANNMLLTD 560
+ A++ LS+ + + N+++
Sbjct: 768 DD---ADVGLDLLSQAKEDGIKPNLVMCR 793
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 90.3 bits (224), Expect = 9e-19
Identities = 72/299 (24%), Positives = 138/299 (46%), Gaps = 19/299 (6%)
Query: 278 PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDT 337
P + T+N L+S + S D ++ +L++ G++ D +T++IS + D F+
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 338 FKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397
F EM++ G T +++ CA A + + +G V+ D V +AL+ +
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554
Query: 398 CGFISEARTLFDKMSERNT---------VTWNSMIFGCANHGYCDEAIELFNQMEERK-K 447
G + A FD ++E +T +++ CAN G D A E++ + E K
Sbjct: 555 SGAVDRA---FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611
Query: 448 LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYE 507
+T + +C G + +++ M++K + P ++ +VD+ G AG L +A+E
Sbjct: 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFE 670
Query: 508 MIKTMSTE---PDLFVWGALLGACKNHGNIELA-EIAAK-HLSELEPESAANNMLLTDL 561
+++ + + +L+GAC N N + A E+ +L P + N L+T L
Sbjct: 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITAL 729
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.8 bits (154), Expect = 8e-13
Identities = 21/50 (42%), Positives = 33/50 (66%)
Query: 278 PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327
P+VVT+NTLI G+ K G KLF M+ +G++P+V +++ +I GL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 6e-12
Identities = 63/301 (20%), Positives = 130/301 (43%), Gaps = 34/301 (11%)
Query: 166 VFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYS 225
VFHEM G++ N+ +++ C + + ++ + D V ++LI
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG 553
Query: 226 KCGSVEKAKKVFDEM------VEKDIVAMNAMVSGYVQRGLATEALNLVEEI------GT 273
+ G+V++A V EM ++ D + + A++ G A + + I GT
Sbjct: 554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT 613
Query: 274 PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333
P V + ++ S+ GD ++ M+ KGV+PD V +++++ H D+
Sbjct: 614 PEV------YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK 667
Query: 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393
AF+ ++ QG + + SS++ AC++A N ++ E++ + + + +AL
Sbjct: 668 AFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNAL-- 725
Query: 394 MYAKCGFISEARTLFDKMS----------ERNTVTWNSMIFGCANHGYCDEAIELFNQME 443
+ A C E L + NT+T++ ++ D ++L +Q +
Sbjct: 726 ITALC----EGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK 781
Query: 444 E 444
E
Sbjct: 782 E 782
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 3e-10
Identities = 15/49 (30%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCH 462
+ VT+N++I G G +EA++LFN+M++R K + +++ ++ C
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.3 bits (132), Expect = 8e-10
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 243 KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK 292
D+V N ++ GY ++G EAL L E+ +KPNV T++ LI G K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 2e-08
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361
PDVV++ ++I G +EA F EM +G P T S ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 45/217 (20%), Positives = 90/217 (41%), Gaps = 6/217 (2%)
Query: 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKH 208
AL A A G A V+ +H +K V + +C D I+ + K
Sbjct: 584 ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643
Query: 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDI----VAMNAMVSGYVQRGLATEA 264
D S+L+D+ G ++KA ++ + ++ I V+ ++++ +A
Sbjct: 644 GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA 703
Query: 265 LNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVS-KLFQLMRAKGVEPDVVSWTSVIS 323
L L E+I + +++P V T N LI+ + G+Q+ + ++ M+ G+ P+ ++++ ++
Sbjct: 704 LELYEDIKSIKLRPTVSTMNALITALCE-GNQLPKALEVLSEMKRLGLCPNTITYSILLV 762
Query: 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360
D D + G P I C
Sbjct: 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 2e-06
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 417 VTWNSMIFGCANHGYCDEAIELFNQMEER 445
VT+NS+I G G +EA+ELF +M+E+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 2e-05
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 10/39 (25%)
Query: 410 KMSERNTVTWNSMIFGCANHGYC-----DEAIELFNQME 443
K + + VT+N++I G C DEA+EL ++ME
Sbjct: 1 KGLKPDVVTYNTLI-----DGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 5e-05
Identities = 41/222 (18%), Positives = 93/222 (41%), Gaps = 27/222 (12%)
Query: 163 AVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLID 222
A++++ +M +G+K + +++ GH D+ +I K SSL+
Sbjct: 633 ALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692
Query: 223 MYSKCGSVEKAKKVFDEM----VEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP 278
S + +KA ++++++ + + MNA+++ + +AL ++ E+ + P
Sbjct: 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752
Query: 279 NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEA---- 334
N +T++ L+ + D + L + G++P++V + + F A
Sbjct: 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEP 812
Query: 335 ---FDT----------------FKEMLSQGFCPTSATISSIL 357
FD+ ++E +S G PT +S +L
Sbjct: 813 VVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVL 854
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDI 245
+SLI Y K G +E+A ++F EM EK +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 2e-04
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 390 ALVDMYAKCGFISEARTLFDKMSER----NTVTWNSMIFGCAN 428
L+D Y K G + EA LF++M +R N T++ +I G
Sbjct: 8 TLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 2e-04
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR 307
+KP+VVT+NTLI G ++G +L M
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 2e-04
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 8/37 (21%)
Query: 309 KGVEPDVVSWTSVISGLVHNFCN----DEAFDTFKEM 341
KG++PDVV++ ++I G C DEA + EM
Sbjct: 1 KGLKPDVVTYNTLIDG----LCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 281 VTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV 315
VT+NTLI G K+G +LF+ M+ +G+EPDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 417 VTWNSMIFGCANHGYCDEAIELFNQMEERK 446
VT+N++I G G +EA+ELF +M+ER
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERG 30
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 6e-04
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIV 246
++LID K G VE+A ++F EM E+ I
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 6e-04
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 280 VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP 313
+ T+N L+ +K+GD + + + M+A G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 281 VTWNTLISGFSKSGDQVMVSKLFQLMRAKGV 311
VT+N+LISG+ K+G +LF+ M+ KGV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 316 VSWTSVISGLVHNFCNDEAFDTFKEMLSQGF 346
V++ S+ISG +EA + FKEM +G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 566 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.86 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.84 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.79 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.78 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.75 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.73 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.71 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.67 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.67 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.66 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.65 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.64 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.64 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.63 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.62 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.62 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.62 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.62 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.61 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.58 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.54 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.53 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.53 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.51 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.51 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.5 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.5 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.5 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.48 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.46 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.46 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.45 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.45 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.43 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.4 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.38 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.38 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.36 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.35 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.35 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.33 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.3 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.28 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.28 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.26 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.26 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.26 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.26 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.24 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.22 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.19 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.17 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.16 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.14 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.12 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.11 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.09 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.08 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.08 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.08 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.08 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.07 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.07 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.03 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.97 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.95 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.93 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.93 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.92 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.92 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.9 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.9 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.89 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.88 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.87 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.85 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.85 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.83 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.8 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.77 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.76 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.76 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.75 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.7 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.7 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.65 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.62 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.61 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.61 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.6 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.59 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.56 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.56 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.54 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.54 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.52 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.52 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.52 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.52 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.47 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.46 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.45 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.43 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.42 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.41 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.4 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.38 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.34 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.31 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.28 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.24 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.23 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.18 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.18 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.16 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.15 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.14 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.12 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.08 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 98.08 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.05 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.05 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.04 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.03 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.99 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.99 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.97 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.94 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.91 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.87 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.86 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.84 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.83 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.83 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.81 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.79 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.78 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.78 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.75 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.73 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.73 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.71 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.69 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.67 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.66 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.65 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.61 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.6 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.59 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.59 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.59 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.58 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.57 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.57 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.57 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.56 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.55 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.54 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.52 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.52 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.5 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.42 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.41 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.41 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.39 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.35 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.29 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.28 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.27 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.25 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.22 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.21 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.2 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.19 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.18 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.18 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.18 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.13 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.12 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.11 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.09 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.03 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.01 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.01 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.96 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.96 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.94 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.94 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.93 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.9 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.86 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.74 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.71 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.62 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.58 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.55 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.52 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.41 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.37 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.34 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.34 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.27 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.27 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.22 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.21 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.2 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.1 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.05 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.04 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.02 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.98 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.93 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.87 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.86 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.86 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.85 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.79 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.76 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.72 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.71 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.71 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.7 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.67 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.67 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.56 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.48 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.44 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.42 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 95.4 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.4 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.26 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.12 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 95.12 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.11 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.1 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.03 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.01 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.99 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.92 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 94.88 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.83 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.81 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.77 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.71 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.7 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.51 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.44 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.33 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.29 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 94.07 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 94.06 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.04 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.94 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 93.93 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 93.87 | |
| PRK09687 | 280 | putative lyase; Provisional | 93.86 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.69 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 93.65 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.56 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 93.5 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 93.27 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.92 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.88 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.82 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 92.73 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.52 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 92.47 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.22 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.21 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 92.04 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 91.88 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 91.7 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 91.46 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.39 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.32 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 91.32 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.25 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.08 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 91.0 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.87 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 90.62 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 90.17 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.06 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 90.02 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.98 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 89.89 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 89.58 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.35 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 88.61 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 88.31 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.29 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 88.13 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 88.09 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 87.42 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.22 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 87.0 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 86.84 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 86.72 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 86.71 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 86.36 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 85.95 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.83 | |
| PRK09687 | 280 | putative lyase; Provisional | 85.13 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 85.11 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 85.09 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 85.06 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 84.89 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 84.89 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 84.88 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 84.19 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 83.82 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 83.55 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 83.28 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 83.27 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 83.21 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 83.08 | |
| KOG0403 | 645 | consensus Neoplastic transformation suppressor Pdc | 82.8 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 82.71 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 82.55 | |
| PF14863 | 141 | Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB | 82.54 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 81.75 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 81.6 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 81.31 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 81.19 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 81.12 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 81.03 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 80.68 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 80.51 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 80.5 | |
| cd08819 | 88 | CARD_MDA5_2 Caspase activation and recruitment dom | 80.08 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 80.06 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-73 Score=610.69 Aligned_cols=492 Identities=36% Similarity=0.612 Sum_probs=454.4
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHH
Q 036165 73 SFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152 (566)
Q Consensus 73 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 152 (566)
+..++..+|+.++++|+..+++..++++|..+++.|+.|++.++|.++.+|+++|++++|.++|++|+++|..+||++|.
T Consensus 182 g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~ 261 (857)
T PLN03077 182 GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMIS 261 (857)
T ss_pred CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHH
Confidence 34555566666666666666666666666666666667777788999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 036165 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK 232 (566)
Q Consensus 153 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 232 (566)
+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..+.+.|+.||..+|+.|+.+|++.|++++
T Consensus 262 ~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 341 (857)
T PLN03077 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 036165 233 AKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE 312 (566)
Q Consensus 233 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 312 (566)
|.++|++|.++|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.
T Consensus 342 A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~ 421 (857)
T PLN03077 342 AEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLI 421 (857)
T ss_pred HHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHH-------------------------------HHHHHCCCCCCHHHHHHHHHHHH
Q 036165 313 PDVVSWTSVISGLVHNFCNDEAFDTF-------------------------------KEMLSQGFCPTSATISSILPACA 361 (566)
Q Consensus 313 ~~~~~~~~li~~~~~~g~~~~A~~~~-------------------------------~~m~~~~~~~~~~~~~~ll~~~~ 361 (566)
|+..+|+.||.+|++.|++++|.++| ++|.. ++.||..||..++.+|+
T Consensus 422 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~ 500 (857)
T PLN03077 422 SYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACA 500 (857)
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHh
Confidence 86666666666666666555555554 55543 57899999999999999
Q ss_pred ccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 036165 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441 (566)
Q Consensus 362 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 441 (566)
+.|+++.+.+++..+.+.|+.++..++++++++|+++|++++|.++|+.+ .+|..+|++||.+|+++|+.++|.++|++
T Consensus 501 ~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~ 579 (857)
T PLN03077 501 RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNR 579 (857)
T ss_pred hhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred hhhc-CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHH
Q 036165 442 MEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFV 520 (566)
Q Consensus 442 ~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~ 520 (566)
|.+. ..||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++++++|++.|++++|.+++++|..+||..+
T Consensus 580 M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~ 659 (857)
T PLN03077 580 MVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAV 659 (857)
T ss_pred HHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHH
Confidence 9998 899999999999999999999999999999996669999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 521 WGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 521 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
|.+|+.+|..+|+.+.++.+.+++++++|+++.+|+.|+++|+..|
T Consensus 660 ~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g 705 (857)
T PLN03077 660 WGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAG 705 (857)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999876
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-68 Score=570.30 Aligned_cols=490 Identities=28% Similarity=0.520 Sum_probs=451.9
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHH
Q 036165 73 SFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152 (566)
Q Consensus 73 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 152 (566)
+.+++..+|..+++.|.+.+.+..+.+++..+++.+..++..++|.++.+|+++|+++.|.++|++|+++|+.+||.+|.
T Consensus 81 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~ 160 (857)
T PLN03077 81 RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVG 160 (857)
T ss_pred CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHH
Confidence 45778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 036165 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK 232 (566)
Q Consensus 153 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 232 (566)
+|++.|++++|+++|++|...|+.||..||+.++.+|+..++++.+.+++..+.+.|+.||..+++.|+.+|++.|++++
T Consensus 161 ~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~ 240 (857)
T PLN03077 161 GYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVS 240 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 036165 233 AKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE 312 (566)
Q Consensus 233 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 312 (566)
|.++|++|.++|..+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.
T Consensus 241 A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~ 320 (857)
T PLN03077 241 ARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFA 320 (857)
T ss_pred HHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999999999999999998888888888888888888877776
Q ss_pred C-------------------------------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036165 313 P-------------------------------DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361 (566)
Q Consensus 313 ~-------------------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 361 (566)
| |..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+
T Consensus 321 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~ 400 (857)
T PLN03077 321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACA 400 (857)
T ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHh
Confidence 6 455666677777777888888888899999999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 036165 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQ 441 (566)
Q Consensus 362 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 441 (566)
+.|+++.|.++++.+.+.|+.++..+++.|+++|+++|++++|.++|++|.++|..+|+.++.+|++.|+.++|..+|++
T Consensus 401 ~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~ 480 (857)
T PLN03077 401 CLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQ 480 (857)
T ss_pred ccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHH
Q 036165 442 MEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVW 521 (566)
Q Consensus 442 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 521 (566)
|....+||..||+.++.+|++.|+.+.+.+++..+.+. |+.++..++++|+++|+++|++++|.++|+++ +||..+|
T Consensus 481 m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~ 557 (857)
T PLN03077 481 MLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSW 557 (857)
T ss_pred HHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhH
Confidence 99879999999999999999999999999999999988 99888888888888888888888888888887 7888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhh--hCCCCchHHHHHHHHHhhcC
Q 036165 522 GALLGACKNHGNIELAEIAAKHLSE--LEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 522 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g 566 (566)
++++.+|.++|+.++|.++|++|.+ ..|+..+ +..+...|.+.|
T Consensus 558 n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~~~~g 603 (857)
T PLN03077 558 NILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT-FISLLCACSRSG 603 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc-HHHHHHHHhhcC
Confidence 8888888888888888888888876 4566655 444444555544
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-65 Score=537.51 Aligned_cols=486 Identities=17% Similarity=0.237 Sum_probs=454.3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHHHH
Q 036165 76 LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGL-ARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAY 154 (566)
Q Consensus 76 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 154 (566)
.+...|..++..+.+.|++++|.++|+.|.+.|+ .++..+++.++..|.+.|..++|..+|+.|..||..+|+.++.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3456788899999999999999999999999985 578888899999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 036165 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234 (566)
Q Consensus 155 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 234 (566)
++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc----CCCChhhHHHHHHHHHHcCChhHHHHHHHHhhh--CCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036165 235 KVFDEM----VEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT--PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRA 308 (566)
Q Consensus 235 ~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 308 (566)
++|++| ..||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999 458999999999999999999999999999976 68999999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHH
Q 036165 309 KGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388 (566)
Q Consensus 309 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 388 (566)
.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHhcCChHHHHHHHHHhhhc-CCCCHHHHHHHHHHHhcc
Q 036165 389 SALVDMYAKCGFISEARTLFDKMS----ERNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHV 463 (566)
Q Consensus 389 ~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 463 (566)
+.++.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|.+. ..||..||+.++.+|++.
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999995 499999999999999999999999999999988 899999999999999999
Q ss_pred CChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cC-------------------CHHHHHHHHHhcC---CCCC
Q 036165 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR----AG-------------------RLAEAYEMIKTMS---TEPD 517 (566)
Q Consensus 464 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g-------------------~~~~A~~~~~~~~---~~p~ 517 (566)
|++++|.+++++|.+. |+.||..+|++++..+.+ ++ ..++|..+|++|. ..||
T Consensus 768 G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd 846 (1060)
T PLN03218 768 DDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPT 846 (1060)
T ss_pred CCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCC
Confidence 9999999999999998 999999999999876432 22 2367999999998 5699
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hCCCCchHHHHHHHHH
Q 036165 518 LFVWGALLGACKNHGNIELAEIAAKHLSE-LEPESAANNMLLTDLY 562 (566)
Q Consensus 518 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~ 562 (566)
..||+.++.++.+.+..+.+..+++.+.. -.+.+...|..|.+-+
T Consensus 847 ~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~ 892 (1060)
T PLN03218 847 MEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF 892 (1060)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh
Confidence 99999999888888999999888887653 2344455566665543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-63 Score=521.82 Aligned_cols=448 Identities=28% Similarity=0.438 Sum_probs=422.4
Q ss_pred CchHHHHHHHHHHhhcCChHHHHHHhccCCC-----CCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHH
Q 036165 111 RLTQIATKLITFYTECQNIHHARMLFDEIPK-----TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSV 185 (566)
Q Consensus 111 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 185 (566)
.+...++.++..|.+.|++++|.++|+.|.. +|..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 4556788888888888888888888887743 57788999999999999999999999999999999999999999
Q ss_pred HHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc----CCCChhhHHHHHHHHHHcCCh
Q 036165 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM----VEKDIVAMNAMVSGYVQRGLA 261 (566)
Q Consensus 186 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~ 261 (566)
+.+|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++| ..+|..+|+.++.++++.|..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 999999999999999999885 478889999999999999999999999998 446888999999999999999
Q ss_pred hHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 036165 262 TEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEM 341 (566)
Q Consensus 262 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 341 (566)
+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|+.|. .+|..+||.+|.+|++.|++++|+++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 458999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHH
Q 036165 342 LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNS 421 (566)
Q Consensus 342 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 421 (566)
.+.|+.||..||+.++.+|++.|+++.|.+++..+.+.|+.|+..++++|+++|+++|++++|.++|++|.++|..+||+
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~ 396 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNA 396 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhc-CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 036165 422 MIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500 (566)
Q Consensus 422 l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 500 (566)
||.+|+++|+.++|.++|++|.+. ..||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++++++|++.|
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC
Confidence 999999999999999999999998 9999999999999999999999999999999987799999999999999999999
Q ss_pred CHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 501 RLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 501 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
++++|.+++++|..+|+..+|++|+.+|..+|+.+.|..+++++++.+|+++..|..|+++|.+.|
T Consensus 477 ~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G 542 (697)
T PLN03081 477 LLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSG 542 (697)
T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999999999876
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-62 Score=515.97 Aligned_cols=467 Identities=16% Similarity=0.246 Sum_probs=440.2
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC----CCcchHHHH
Q 036165 75 HLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK----TNIHRWIAL 150 (566)
Q Consensus 75 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l 150 (566)
+++.-.+..++..|.+.|.+++|..+++.|.. |+..+|+.++..|++.|+++.|.++|+.|.+ ||..+|+.+
T Consensus 403 ~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsL 478 (1060)
T PLN03218 403 DMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTL 478 (1060)
T ss_pred CchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 44555677889999999999999999998864 8999999999999999999999999999975 789999999
Q ss_pred HHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 036165 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSV 230 (566)
Q Consensus 151 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 230 (566)
|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++
T Consensus 479 I~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~ 558 (1060)
T PLN03218 479 ISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC------CCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHH
Q 036165 231 EKAKKVFDEMV------EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQ 304 (566)
Q Consensus 231 ~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 304 (566)
++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|++++|.++|+
T Consensus 559 deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~ 638 (1060)
T PLN03218 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD 638 (1060)
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999993 479999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCc
Q 036165 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGD 384 (566)
Q Consensus 305 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 384 (566)
+|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+
T Consensus 639 eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd 718 (1060)
T PLN03218 639 DMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT 718 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHhcCChHHHHHHHHHhhhc-CCCCHHHHHHHHHH
Q 036165 385 LHVRSALVDMYAKCGFISEARTLFDKMSE----RNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTA 459 (566)
Q Consensus 385 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~ 459 (566)
..+|+.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|+.++|.+++++|.+. ..||..+|+.++..
T Consensus 719 vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIgl 798 (1060)
T PLN03218 719 VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL 798 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999974 99999999999999999999999999999998 89999999999876
Q ss_pred Hhc----c-------------------CChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC---
Q 036165 460 CCH----V-------------------GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--- 513 (566)
Q Consensus 460 ~~~----~-------------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--- 513 (566)
|.+ . +..+.|..+|++|++. |+.||..+|+.++.++++.+..+.+..+++.|.
T Consensus 799 c~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~-Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~ 877 (1060)
T PLN03218 799 CLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA-GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISA 877 (1060)
T ss_pred HHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCC
Confidence 542 1 1236799999999999 999999999999999999999999999999987
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC
Q 036165 514 TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELE 548 (566)
Q Consensus 514 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 548 (566)
..|+..+|++++.++.+. .++|..+++.|.+.+
T Consensus 878 ~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 878 DSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred CCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 447789999999998433 478999999999744
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-61 Score=507.32 Aligned_cols=432 Identities=26% Similarity=0.377 Sum_probs=418.6
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHH
Q 036165 73 SFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152 (566)
Q Consensus 73 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 152 (566)
++.++..+|+.++.+|++.++++.+.++|..+.+.|+.||+.++|.++.+|+++|++++|.++|++|++||..+||.+|.
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~ 197 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIG 197 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHH
Confidence 35688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 036165 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK 232 (566)
Q Consensus 153 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 232 (566)
+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|+..|..+.+.+++..+.+.|+.||..+++.|+++|++.|++++
T Consensus 198 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 277 (697)
T PLN03081 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277 (697)
T ss_pred HHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 036165 233 AKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE 312 (566)
Q Consensus 233 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 312 (566)
|.++|++|.++|+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.
T Consensus 278 A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~ 357 (697)
T PLN03081 278 ARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP 357 (697)
T ss_pred HHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHH
Q 036165 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392 (566)
Q Consensus 313 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 392 (566)
||..+|+.||.+|++.|++++|.++|++|. .||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..+|+.++
T Consensus 358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll 433 (697)
T PLN03081 358 LDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL 433 (697)
T ss_pred CCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 999999999999999999999999999995 5789999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChH
Q 036165 393 DMYAKCGFISEARTLFDKMSE-----RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVE 467 (566)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 467 (566)
.+|.+.|.+++|.++|+.|.+ |+..+|+.++.+|++.|++++|.+++++|. ..|+..+|++++.+|...|+++
T Consensus 434 ~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~--~~p~~~~~~~Ll~a~~~~g~~~ 511 (697)
T PLN03081 434 SACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP--FKPTVNMWAALLTACRIHKNLE 511 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCcH
Confidence 999999999999999999963 889999999999999999999999998764 6899999999999999999999
Q ss_pred HHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 468 LGQRLFNMMQEKYKIMPR-TEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 468 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
.|..+++++. +..|+ ..+|..|+++|++.|++++|.++++.|.
T Consensus 512 ~a~~~~~~l~---~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 512 LGRLAAEKLY---GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred HHHHHHHHHh---CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999987 45564 6799999999999999999999999997
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-31 Score=287.83 Aligned_cols=482 Identities=14% Similarity=0.049 Sum_probs=331.3
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC-------------
Q 036165 75 HLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK------------- 141 (566)
Q Consensus 75 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------- 141 (566)
+.++..+..+...+...|+++.|..+++.+.+... .+...+..+...+...|++++|.+.|+.+.+
T Consensus 360 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 438 (899)
T TIGR02917 360 PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLI 438 (899)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHH
Confidence 34455566666666666666666666666665432 2344444555555555555555555544332
Q ss_pred ------------------------CCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhH
Q 036165 142 ------------------------TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGT 197 (566)
Q Consensus 142 ------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 197 (566)
.+..+|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++
T Consensus 439 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 439 LSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 233445555555555555555555555555432 1233344445555555566666
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCChhHHHHHHHHhhhC
Q 036165 198 GEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE---KDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274 (566)
Q Consensus 198 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 274 (566)
|.+.++.+.+.+ +.+..++..+...+.+.|+.++|...++++.. .+...+..++..+.+.|++++|..+++.+...
T Consensus 518 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 596 (899)
T TIGR02917 518 AIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA 596 (899)
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 666666655543 33455555566666666666666666666522 23445556666667777777777777766543
Q ss_pred CCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 036165 275 RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354 (566)
Q Consensus 275 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 354 (566)
. +.+...|..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|...|+++.+.. +.+..++.
T Consensus 597 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 673 (899)
T TIGR02917 597 A-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQI 673 (899)
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 2 4456667777777777777777777777776542 3345566677777777777777777777776643 34456677
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCCh
Q 036165 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--RNTVTWNSMIFGCANHGYC 432 (566)
Q Consensus 355 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 432 (566)
.+...+...|+++.|..+++.+.+..+ .+...+..+...+.+.|++++|...|+++.. |+..++..++.++...|++
T Consensus 674 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 674 GLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCH
Confidence 777777777777777777777776653 3566677778888888888888888887764 5556777778888888888
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036165 433 DEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512 (566)
Q Consensus 433 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 512 (566)
++|.+.++++.+..+.+...+..+...+...|++++|.+.|+++.+. .+.++..++.++..+.+.|+ .+|+.+++++
T Consensus 753 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~ 829 (899)
T TIGR02917 753 AEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKA 829 (899)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 88888888888877778888888888888899999999999988875 35567788888888988888 7798888887
Q ss_pred C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 513 S--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 513 ~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
. .+.++.++..+...+...|++++|...++++++.+|.++.++..++.+|.+.|
T Consensus 830 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 885 (899)
T TIGR02917 830 LKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATG 885 (899)
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC
Confidence 6 23456677788888999999999999999999999999999999999998776
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-30 Score=285.27 Aligned_cols=480 Identities=13% Similarity=0.045 Sum_probs=326.1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC---CCcchHHHHHHH
Q 036165 77 SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK---TNIHRWIALTGA 153 (566)
Q Consensus 77 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 153 (566)
++..+..+...+.+.|+++.|...++.+.+.. +.++..+..+...+.+.|++++|.+.|+++.+ .+...|..+...
T Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 406 (899)
T TIGR02917 328 SHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGIS 406 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34445555566666677777777777666554 23455666667777777777777777766544 234456666666
Q ss_pred HHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 036165 154 YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKA 233 (566)
Q Consensus 154 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 233 (566)
+...|++++|++.|+++.+.+.. .......++..+.+.|++++|.++++.+.+. .+.+..++..+...+...|++++|
T Consensus 407 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A 484 (899)
T TIGR02917 407 KLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKA 484 (899)
T ss_pred HHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHH
Confidence 67777777777777776654322 2233344555666667777777777776654 245566777777777777888888
Q ss_pred HHHHHhcCC---CChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036165 234 KKVFDEMVE---KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG 310 (566)
Q Consensus 234 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 310 (566)
.+.|+++.+ .+...+..+...+...|++++|.+.++++...+ +.+..++..+...+.+.|+.++|..+++++.+.+
T Consensus 485 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 563 (899)
T TIGR02917 485 REAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN 563 (899)
T ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 877777632 344566667777777777777777777776543 3455667777777777777777777777776553
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHH
Q 036165 311 VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390 (566)
Q Consensus 311 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 390 (566)
+.+...+..++..+...|++++|..+++.+.+.. +.+...+..+..++...|++++|...++.+.+.... +...+..
T Consensus 564 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 640 (899)
T TIGR02917 564 -PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLL 640 (899)
T ss_pred -ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHH
Confidence 3345566677777777777777777777776543 455667777777777778888887777777765432 5566667
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChH
Q 036165 391 LVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVE 467 (566)
Q Consensus 391 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 467 (566)
+..+|.+.|++++|..+|+++.+ .+..++..++..+...|++++|.++++.+.+..+.+...+..+...+...|+++
T Consensus 641 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 720 (899)
T TIGR02917 641 LADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYP 720 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHH
Confidence 77777777788887777777654 345667777777777777777777777777766666667777777777777777
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036165 468 LGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLS 545 (566)
Q Consensus 468 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 545 (566)
+|.+.++.+... .|+..++..++.++.+.|++++|.+.++++. .+.+..++..+...|...|++++|...+++++
T Consensus 721 ~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 797 (899)
T TIGR02917 721 AAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVV 797 (899)
T ss_pred HHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 777777777654 3444666667777777777777777777665 23456666667777777777777777777777
Q ss_pred hhCCCCchHHHHHHHHHhhcC
Q 036165 546 ELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 546 ~~~p~~~~~~~~l~~~~~~~g 566 (566)
+.+|+++..+..++++|...|
T Consensus 798 ~~~p~~~~~~~~l~~~~~~~~ 818 (899)
T TIGR02917 798 KKAPDNAVVLNNLAWLYLELK 818 (899)
T ss_pred HhCCCCHHHHHHHHHHHHhcC
Confidence 777777777777777766544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-22 Score=223.59 Aligned_cols=484 Identities=12% Similarity=0.044 Sum_probs=232.3
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHH----------------HHHHHHHhhcCChHHHHHHhc
Q 036165 74 FHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIA----------------TKLITFYTECQNIHHARMLFD 137 (566)
Q Consensus 74 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~g~~~~A~~~~~ 137 (566)
-|-+++.+......+...|+.++|.+.++++.+..+. ++... -.+...+...|++++|.+.|+
T Consensus 58 ~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~ 136 (1157)
T PRK11447 58 DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYD 136 (1157)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHH
Confidence 3455677777777777788888888888888777632 22221 222345677788888888777
Q ss_pred cCCCCCcchHH----HHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCC-
Q 036165 138 EIPKTNIHRWI----ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT- 212 (566)
Q Consensus 138 ~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~- 212 (566)
...+.+..... .........|++++|++.|+++.+.. +-+...+..+...+...|+.++|.+.++++.+.....
T Consensus 137 ~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~ 215 (1157)
T PRK11447 137 KLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRD 215 (1157)
T ss_pred HHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchH
Confidence 76553222111 11111223477778888888877753 2244455666677777778888888887775532100
Q ss_pred ---------------chh---HHH----------------------------------HHHHHHHhcCCHHHHHHHHHhc
Q 036165 213 ---------------DAF---VVS----------------------------------SLIDMYSKCGSVEKAKKVFDEM 240 (566)
Q Consensus 213 ---------------~~~---~~~----------------------------------~l~~~~~~~g~~~~A~~~~~~~ 240 (566)
+.. .+. .....+...|++++|+..|++.
T Consensus 216 ~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~a 295 (1157)
T PRK11447 216 AAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQA 295 (1157)
T ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 000 000 0112233444555555555444
Q ss_pred CC---CChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCc-cHHHH------------HHHHHHHhcCCCHHHHHHHHH
Q 036165 241 VE---KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP-NVVTW------------NTLISGFSKSGDQVMVSKLFQ 304 (566)
Q Consensus 241 ~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~------------~~ll~~~~~~~~~~~a~~~~~ 304 (566)
.. .+...+..+...+.+.|++++|+..|++..+..... ....+ ......+.+.|++++|...++
T Consensus 296 L~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~ 375 (1157)
T PRK11447 296 VRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQ 375 (1157)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 22 133444444455555555555555555444322110 00000 011223344455555555555
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCC--
Q 036165 305 LMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE-- 382 (566)
Q Consensus 305 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-- 382 (566)
++.+.. +.+...+..+..++...|++++|++.|++.++.. +.+...+..+...+. .++.++|..+++.+......
T Consensus 376 ~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~ 452 (1157)
T PRK11447 376 QARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSI 452 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHH
Confidence 544431 1223334444445555555555555555544432 122223333333332 23444444444433211000
Q ss_pred ------CcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHH
Q 036165 383 ------GDLHVRSALVDMYAKCGFISEARTLFDKMSE--R-NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSF 453 (566)
Q Consensus 383 ------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 453 (566)
.....+..+...+...|++++|+..|++..+ | +...+..+...|.+.|++++|...++++.+..+.+...+
T Consensus 453 ~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~ 532 (1157)
T PRK11447 453 DDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQV 532 (1157)
T ss_pred HHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 0011223344555566677777776666653 3 344555566666677777777777777665544455555
Q ss_pred HHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh---------hHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHH
Q 036165 454 TAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT---------EHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGAL 524 (566)
Q Consensus 454 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 524 (566)
..+...+...|+.++|...++.+... ...++. ..+..+...+...|+.++|.++++.- ++++..+..+
T Consensus 533 ~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~--p~~~~~~~~L 609 (1157)
T PRK11447 533 YAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ--PPSTRIDLTL 609 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC--CCCchHHHHH
Confidence 44555555666777777766654221 100000 00111222333334444444443311 1222333444
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhc
Q 036165 525 LGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565 (566)
Q Consensus 525 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 565 (566)
...+.+.|++++|+..++++++.+|+++.++..++.+|..+
T Consensus 610 a~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~ 650 (1157)
T PRK11447 610 ADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQ 650 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 44444444444444444444444444444444444444433
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-22 Score=224.60 Aligned_cols=470 Identities=10% Similarity=-0.021 Sum_probs=321.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCchHH-HHHHHHHHhhcCChHHHHHHhccCCC--C-CcchHHHHHHHHHhcCCh
Q 036165 85 IEIYIRDRALQSGKILHAQLIVSGLARLTQI-ATKLITFYTECQNIHHARMLFDEIPK--T-NIHRWIALTGAYARRGYH 160 (566)
Q Consensus 85 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~ 160 (566)
...+...|++++|.+.++.+++... ++... ...+.......|+.++|++.++++.+ | +...+..+...+...|++
T Consensus 119 A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~ 197 (1157)
T PRK11447 119 ARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRR 197 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCH
Confidence 3456778888888888888877643 33222 11122222345788888888887765 2 455677888888888888
Q ss_pred HHHHHHHHHhHHCCC------------------C--------------CCcchH---------------------HHHHH
Q 036165 161 QEAVTVFHEMHIQGL------------------K--------------QNIFVI---------------------PSVLK 187 (566)
Q Consensus 161 ~~A~~~~~~m~~~g~------------------~--------------p~~~~~---------------------~~ll~ 187 (566)
++|++.++++.+... . |+.... .....
T Consensus 198 ~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~ 277 (1157)
T PRK11447 198 DEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGL 277 (1157)
T ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHH
Confidence 888888887754310 0 111000 01123
Q ss_pred HHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh---hhHH------------H
Q 036165 188 ACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE--KDI---VAMN------------A 250 (566)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~------------~ 250 (566)
.+...|++++|...+++.++.. +.+...+..+..++.+.|++++|+..|++..+ |+. ..|. .
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 3456788899999999888864 44677888888899999999999999988743 221 1121 2
Q ss_pred HHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHH---------
Q 036165 251 MVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV--------- 321 (566)
Q Consensus 251 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------- 321 (566)
....+.+.|++++|...|++..... +.+...+..+...+...|++++|.+.|+++.+.. +.+...+..+
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCH
Confidence 2345677889999999999888753 3345667778888888899999999998887652 1223333333
Q ss_pred ---------------------------------HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHH
Q 036165 322 ---------------------------------ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRR 368 (566)
Q Consensus 322 ---------------------------------i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 368 (566)
...+...|++++|++.|++.++.. +-+...+..+...+...|++++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 233445677777777777776643 2234455666667777777777
Q ss_pred HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----Chh---------HHHHHHHHHHhcCChHHH
Q 036165 369 GKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER----NTV---------TWNSMIFGCANHGYCDEA 435 (566)
Q Consensus 369 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~---------~~~~l~~~~~~~~~~~~A 435 (566)
|...++.+.+..+. +...+..+...+.+.|+.++|...++.+... +.. .+..+...+...|+.++|
T Consensus 514 A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 514 ADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 77777777664432 3444444455556677777777777766531 111 122344566777888888
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-C
Q 036165 436 IELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-T 514 (566)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 514 (566)
.++++ ..+.+...+..+...+.+.|++++|+..++++.+. -+.+...+..++.+|...|++++|.+.+++.. .
T Consensus 593 ~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 593 EALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 88776 24556667788888999999999999999999875 24457788899999999999999999999877 2
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCch------HHHHHHHHHhhcC
Q 036165 515 EP-DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAA------NNMLLTDLYANAG 566 (566)
Q Consensus 515 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g 566 (566)
.| +...+..+..++...|++++|.+.++++++..|+++. .+..++.++..+|
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G 725 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTG 725 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcC
Confidence 33 5666777888899999999999999999988776553 5666788887665
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.9e-23 Score=192.53 Aligned_cols=434 Identities=15% Similarity=0.094 Sum_probs=290.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC---CCcchHHHHHHHHHh
Q 036165 80 AYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK---TNIHRWIALTGAYAR 156 (566)
Q Consensus 80 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 156 (566)
....+.+..-..|++.+|++-...+-+.+.. +....-.+-..+....+.+.....-....+ .-..+|..+.+.+-.
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKE 128 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHH
Confidence 4566666677788888888866666555432 222222233445555555544433322222 234578888888888
Q ss_pred cCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchh-HHHHHHHHHHhcCCHHHHHH
Q 036165 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAF-VVSSLIDMYSKCGSVEKAKK 235 (566)
Q Consensus 157 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~l~~~~~~~g~~~~A~~ 235 (566)
.|++.+|+.+++.|.+... -....|..+..++...|+.+.|.+.+.+.++. .|+.. ..+.+.......|++++|..
T Consensus 129 rg~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 8888888888888887532 25667888888888888888888888888775 34433 33445555556677777777
Q ss_pred HHHhcCCCC---hhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCcc-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 036165 236 VFDEMVEKD---IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN-VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV 311 (566)
Q Consensus 236 ~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 311 (566)
.+-+..+.+ .+.|+.|.-.+-.+|+...|++-|++.... .|+ ...|..|...|...+.++.|...+.+....
T Consensus 206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-- 281 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-- 281 (966)
T ss_pred HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence 766664332 245777777777777777777777766543 333 234555555555555555555555554433
Q ss_pred CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHH
Q 036165 312 EP-DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390 (566)
Q Consensus 312 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 390 (566)
.| ....+..+...|-.+|..|.|+..|++.+ +..+. -+..|+.
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral-----------------------------------~~~P~-F~~Ay~N 325 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRAL-----------------------------------ELQPN-FPDAYNN 325 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHH-----------------------------------hcCCC-chHHHhH
Confidence 22 23344444444555555555555555544 43222 3556777
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChH
Q 036165 391 LVDMYAKCGFISEARTLFDKMSE--R-NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVE 467 (566)
Q Consensus 391 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 467 (566)
|..++...|++.+|...+.+... | ...+.+.|...|...|.+++|..+|....+-.+.-...++.|...|.+.|+++
T Consensus 326 lanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~ 405 (966)
T KOG4626|consen 326 LANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLD 405 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHH
Confidence 77777777888888887777664 3 34567777888888888888888888877765656667888888888888888
Q ss_pred HHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036165 468 LGQRLFNMMQEKYKIMPR-TEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPD-LFVWGALLGACKNHGNIELAEIAAKHL 544 (566)
Q Consensus 468 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 544 (566)
+|+..++++. .+.|+ ...|+.+...|...|+.+.|.+.+.++. ..|. ....+.|...|..+|+..+|+..|+.+
T Consensus 406 ~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~a 482 (966)
T KOG4626|consen 406 DAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTA 482 (966)
T ss_pred HHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHH
Confidence 8888888887 45666 4678888888888888888888888776 4454 456788888888888888888888888
Q ss_pred hhhCCCCchHHHHHHH
Q 036165 545 SELEPESAANNMLLTD 560 (566)
Q Consensus 545 ~~~~p~~~~~~~~l~~ 560 (566)
+++.||.|.++.+|.-
T Consensus 483 LklkPDfpdA~cNllh 498 (966)
T KOG4626|consen 483 LKLKPDFPDAYCNLLH 498 (966)
T ss_pred HccCCCCchhhhHHHH
Confidence 8888888888877754
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-20 Score=195.24 Aligned_cols=475 Identities=11% Similarity=-0.020 Sum_probs=269.1
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC--C-CcchHHHHH
Q 036165 75 HLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK--T-NIHRWIALT 151 (566)
Q Consensus 75 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li 151 (566)
|-+++.+..+.+.+...|++++|+...+..++... .|...+..+ +..++.++|..+++++.+ | +...+..+.
T Consensus 75 P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~L----a~i~~~~kA~~~ye~l~~~~P~n~~~~~~la 149 (987)
T PRK09782 75 PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSL----AAIPVEVKSVTTVEELLAQQKACDAVPTLRC 149 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHH----HHhccChhHHHHHHHHHHhCCCChhHHHHHH
Confidence 34455566666666666666666666666666542 233333322 112566666666666543 2 233333333
Q ss_pred HH--------HHhcCChHHHHHHHHHhHHCCCCCCcchHHHH-HHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 036165 152 GA--------YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSV-LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLID 222 (566)
Q Consensus 152 ~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~ 222 (566)
.. |.+. ++|.+.++ .......|+..+.... .+.+...|+++.|.+++.++.+.+ +.+......|..
T Consensus 150 ~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ 224 (987)
T PRK09782 150 RSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFD 224 (987)
T ss_pred HHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 33 4433 33333333 2222233334444444 667777788888888888888776 334444555666
Q ss_pred HHHh-cCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCC-ccHHHHH----------------
Q 036165 223 MYSK-CGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK-PNVVTWN---------------- 284 (566)
Q Consensus 223 ~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~---------------- 284 (566)
+|.. .++ +++..+++...+.+...+..++..|.+.|+.++|.++++++...... |...++.
T Consensus 225 ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~ 303 (987)
T PRK09782 225 VLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALAN 303 (987)
T ss_pred HHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccc
Confidence 6666 355 77777766544557777788888888888888888888877432111 2222211
Q ss_pred --------------HHHHHHhcCCCHHHHH--------------------------------------------------
Q 036165 285 --------------TLISGFSKSGDQVMVS-------------------------------------------------- 300 (566)
Q Consensus 285 --------------~ll~~~~~~~~~~~a~-------------------------------------------------- 300 (566)
.++..+.+.++++.++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~ 383 (987)
T PRK09782 304 YTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLT 383 (987)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 1122223333333222
Q ss_pred -------------HHHHHHHHc-C-CCCChhhHHHHHHHHHhcCC---hhHHHHH----------------------HHH
Q 036165 301 -------------KLFQLMRAK-G-VEPDVVSWTSVISGLVHNFC---NDEAFDT----------------------FKE 340 (566)
Q Consensus 301 -------------~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~---~~~A~~~----------------------~~~ 340 (566)
++++..... + ...+.....-++..|.+.+. ..++..+ ++.
T Consensus 384 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (987)
T PRK09782 384 WQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPA 463 (987)
T ss_pred HHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHH
Confidence 222222110 0 00011222233344443333 1122111 000
Q ss_pred HHHC-CC-CC--CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C
Q 036165 341 MLSQ-GF-CP--TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--R 414 (566)
Q Consensus 341 m~~~-~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~ 414 (566)
.... +. ++ +...+..+..++.. ++.++|...+....... |+......+...+.+.|++++|...|+++.. +
T Consensus 464 ~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p 540 (987)
T PRK09782 464 IVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDM 540 (987)
T ss_pred HHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 0000 01 11 23334444444443 56666666666665543 3333333344455677888888888876654 4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036165 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVD 494 (566)
Q Consensus 415 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 494 (566)
+...+..+..++.+.|+.++|...+++..+..+.+...+..+.......|++++|...+++..+. .|+...+..+..
T Consensus 541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~ 617 (987)
T PRK09782 541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARAT 617 (987)
T ss_pred CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHH
Confidence 44455566667777888888888888777655444444444444555668888888888888754 566777778888
Q ss_pred HHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 495 LLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 495 ~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
++.+.|++++|...+++.. ..| +...+..+..++...|++++|+..++++++.+|+++.++..++.+|..+|
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLD 691 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 8888888888888888776 334 46666777777888888888888888888888888888888888887765
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-21 Score=181.33 Aligned_cols=392 Identities=18% Similarity=0.211 Sum_probs=298.0
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHH
Q 036165 87 IYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK---TNIHRWIALTGAYARRGYHQEA 163 (566)
Q Consensus 87 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 163 (566)
++....+.+...+--...++.. +.-..+|..+...+-..|++++|..+++.+.+ ..+..|..+..++..+|+.+.|
T Consensus 91 i~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a 169 (966)
T KOG4626|consen 91 IFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELA 169 (966)
T ss_pred hhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCccc
Confidence 3333444544444444444433 24557888899999999999999999998876 3567899999999999999999
Q ss_pred HHHHHHhHHCCCCCCcchHHH-HHHHHcccCChhHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 164 VTVFHEMHIQGLKQNIFVIPS-VLKACGHLSDIGTGEKIHSLVLKHSFGTD-AFVVSSLIDMYSKCGSVEKAKKVFDEMV 241 (566)
Q Consensus 164 ~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 241 (566)
.+.|.+..+ +.|+.....+ +...+-..|++.+|...+.+.++.. |. ...|+.|...+-.+|+...|+..|++..
T Consensus 170 ~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAv 245 (966)
T KOG4626|consen 170 VQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV 245 (966)
T ss_pred HHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhh
Confidence 999999988 4566554433 3333446799999999999998863 43 4578899999999999999999999996
Q ss_pred CCC---hhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCcc-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-hh
Q 036165 242 EKD---IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN-VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD-VV 316 (566)
Q Consensus 242 ~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~ 316 (566)
.-| ...|-.|...|...+.+++|+..|.+.... .|+ .+.+..+...|...|+++.|...+++.++. .|+ ..
T Consensus 246 kldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~ 321 (966)
T KOG4626|consen 246 KLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPD 321 (966)
T ss_pred cCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchH
Confidence 544 357999999999999999999999987764 454 567888888999999999999999999876 443 67
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHH
Q 036165 317 SWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396 (566)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 396 (566)
.|+.|..++-..|+..+|...|.+.+.- .|+ .....+.|...|.
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~----------------------------------hadam~NLgni~~ 365 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRL--CPN----------------------------------HADAMNNLGNIYR 365 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHh--CCc----------------------------------cHHHHHHHHHHHH
Confidence 8999999999999999999999888754 222 3445566777777
Q ss_pred hcCCHHHHHHHHHhcCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 036165 397 KCGFISEARTLFDKMSE--RN-TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLF 473 (566)
Q Consensus 397 ~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 473 (566)
..|.+++|.++|....+ |. ....+.|...|.++|+.++|+..|++..+-.+.-...|+.+...|...|+.+.|++.+
T Consensus 366 E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y 445 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCY 445 (966)
T ss_pred HhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHH
Confidence 77777777777776665 32 3456777777888888888888888777755555567888888888888888888888
Q ss_pred HHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHH
Q 036165 474 NMMQEKYKIMPR-TEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPD-LFVWGALLG 526 (566)
Q Consensus 474 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~ 526 (566)
.+++. +.|. .+..+.|...|...|+..+|.+-+++.. .+|| +..+-.++-
T Consensus 446 ~rAI~---~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh 498 (966)
T KOG4626|consen 446 TRAIQ---INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLH 498 (966)
T ss_pred HHHHh---cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHH
Confidence 87773 4554 3567778888888888888888887766 4554 344444443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-18 Score=184.39 Aligned_cols=462 Identities=11% Similarity=0.056 Sum_probs=325.4
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCCc---chHHHHHHHHHhcCChHHHH
Q 036165 88 YIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNI---HRWIALTGAYARRGYHQEAV 164 (566)
Q Consensus 88 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~ 164 (566)
+...|++++|...++.+++..+. ++.++..+..+|...|+.++|+..+++..+.++ ..+..+ ..+ +++.+|.
T Consensus 54 ~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L-a~i---~~~~kA~ 128 (987)
T PRK09782 54 AQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL-AAI---PVEVKSV 128 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH-HHh---ccChhHH
Confidence 33459999999999999998754 488899999999999999999999998877433 333333 222 8999999
Q ss_pred HHHHHhHHCCCCCC-cchHHHHHHHH-----cccCChhHHHHHHHHHHHcCCCCchhHHHHH-HHHHHhcCCHHHHHHHH
Q 036165 165 TVFHEMHIQGLKQN-IFVIPSVLKAC-----GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSL-IDMYSKCGSVEKAKKVF 237 (566)
Q Consensus 165 ~~~~~m~~~g~~p~-~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-~~~~~~~g~~~~A~~~~ 237 (566)
.+++++... .|+ ...+..+.... ....+.+.|.+.++ .......|+..+.... ..+|.+.|++++|++.+
T Consensus 129 ~~ye~l~~~--~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 129 TTVEELLAQ--QKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHHHh--CCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 999999986 344 33444444430 12334466666666 4333334445555555 89999999999999999
Q ss_pred HhcCCC---ChhhHHHHHHHHHH-cCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC-
Q 036165 238 DEMVEK---DIVAMNAMVSGYVQ-RGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE- 312 (566)
Q Consensus 238 ~~~~~~---~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~- 312 (566)
.++.+. +......|...|.. .++ +++..+++. .++-+......+...+.+.|+.++|.++++++...-..
T Consensus 206 ~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 206 NEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 999654 34446667778887 366 778777553 33467788889999999999999999999987543111
Q ss_pred C-------------------------------------------------------------------------------
Q 036165 313 P------------------------------------------------------------------------------- 313 (566)
Q Consensus 313 ~------------------------------------------------------------------------------- 313 (566)
|
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 360 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAE 360 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhH
Confidence 1
Q ss_pred --------------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHccCc---hHHHHHH--
Q 036165 314 --------------DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ-G-FCPTSATISSILPACASAAN---MRRGKEI-- 372 (566)
Q Consensus 314 --------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~-~~~~~~~~~~ll~~~~~~~~---~~~a~~~-- 372 (566)
+......+.-.....|+.++|..+|+..... + -.++......++..+.+.+. ..++..+
T Consensus 361 ~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 440 (987)
T PRK09782 361 ALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK 440 (987)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc
Confidence 1111111111234556677777777776541 1 22333344466666666655 2222211
Q ss_pred --------------------HHHHHHh-CC-CC--cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHH
Q 036165 373 --------------------HGCAIVM-GV-EG--DLHVRSALVDMYAKCGFISEARTLFDKMSE--RNTVTWNSMIFGC 426 (566)
Q Consensus 373 --------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~ 426 (566)
....... +. ++ +...+..+..++.. ++.++|...+.+... |+......+...+
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al 519 (987)
T PRK09782 441 PLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQA 519 (987)
T ss_pred ccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 1111111 11 22 56677777777776 788889997776664 5544333344455
Q ss_pred HhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 036165 427 ANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506 (566)
Q Consensus 427 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 506 (566)
...|++++|...|+++... +|+...+..+..++.+.|++++|...+++..+. . +.+...+..+...+.+.|++++|.
T Consensus 520 ~~~Gr~eeAi~~~rka~~~-~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l-~-P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 520 YQVEDYATALAAWQKISLH-DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR-G-LGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HHCCCHHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHhCCCHHHHH
Confidence 6899999999999997654 455556777788899999999999999999875 2 223333444444555679999999
Q ss_pred HHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 507 EMIKTMS-TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 507 ~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
..+++.. ..|+...|..+..++.+.|++++|+..++++++.+|+++.++..++.++...|
T Consensus 597 ~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G 657 (987)
T PRK09782 597 NDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSG 657 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 9999988 56888899999999999999999999999999999999999999999998775
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.6e-19 Score=183.89 Aligned_cols=399 Identities=10% Similarity=-0.001 Sum_probs=280.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 036165 147 WIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSK 226 (566)
Q Consensus 147 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 226 (566)
+......+.+.|++++|+..|++... ..|+...|..+..++...|++++|.+.++..++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 44566677777888888888887766 35566677777777777788888888888877754 3345567777777888
Q ss_pred cCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHHcCChhHHHHHHHHhhh---------------------------CCC
Q 036165 227 CGSVEKAKKVFDEMVEKD---IVAMNAMVSGYVQRGLATEALNLVEEIGT---------------------------PRV 276 (566)
Q Consensus 227 ~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~---------------------------~~~ 276 (566)
.|++++|...|..+...+ ......++..+........+...++.-.. ...
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 888888777665542111 11111111111100000111111110000 000
Q ss_pred CccH-HHHHHHHHH---HhcCCCHHHHHHHHHHHHHcC-CCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 036165 277 KPNV-VTWNTLISG---FSKSGDQVMVSKLFQLMRAKG-VEP-DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTS 350 (566)
Q Consensus 277 ~p~~-~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 350 (566)
.+.. ..+..+... ....+++++|.+.|+...+.+ ..| ....|+.+...+...|++++|+..|++.++.. +-..
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH
Confidence 0100 001111111 123467899999999988764 223 45678888888999999999999999998753 2335
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHH
Q 036165 351 ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--R-NTVTWNSMIFGCA 427 (566)
Q Consensus 351 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~ 427 (566)
..+..+...+...|++++|...++.+++..+. +..++..+...+...|++++|...|++..+ | +...+..+...+.
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence 57888888899999999999999999887543 678888999999999999999999998875 3 4667778888999
Q ss_pred hcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh-h-------HHHHHHHHHHhc
Q 036165 428 NHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT-E-------HYACMVDLLGRA 499 (566)
Q Consensus 428 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~-------~~~~l~~~~~~~ 499 (566)
+.|++++|+..|++..+..+.+...++.+..++...|++++|++.|++..+. .|+. . .++.....+...
T Consensus 445 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHh
Confidence 9999999999999999877778889999999999999999999999998864 3321 1 112222334457
Q ss_pred CCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCch
Q 036165 500 GRLAEAYEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAA 553 (566)
Q Consensus 500 g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 553 (566)
|++++|.+.+++.. ..| +...+..+...+.+.|++++|+..++++.++.+....
T Consensus 522 ~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 522 QDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 99999999999876 344 4557888999999999999999999999998876444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-19 Score=176.24 Aligned_cols=463 Identities=13% Similarity=0.100 Sum_probs=362.3
Q ss_pred CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCC------cchHHHHHHHHHhcCChHHHHH
Q 036165 92 RALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTN------IHRWIALTGAYARRGYHQEAVT 165 (566)
Q Consensus 92 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~ 165 (566)
..+..+..++...-... ..+|.+.+.|...|.-.|++..+..+.+.+...+ ..+|.-+.++|...|++++|..
T Consensus 250 ~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~ 328 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFK 328 (1018)
T ss_pred HHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 34455666666665554 3688899999999999999999999988776532 3468889999999999999999
Q ss_pred HHHHhHHCCCCCCcc--hHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC----CHHHHHHHHHh
Q 036165 166 VFHEMHIQGLKQNIF--VIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCG----SVEKAKKVFDE 239 (566)
Q Consensus 166 ~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~ 239 (566)
.|.+..+. .++.+ .+-.+.+.+...|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++.+
T Consensus 329 yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K 405 (1018)
T KOG2002|consen 329 YYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGK 405 (1018)
T ss_pred HHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence 99777664 44543 45567888999999999999999999874 666778888888887775 56777777777
Q ss_pred cCCC---ChhhHHHHHHHHHHcCChhHHHHHHHHh----hhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---
Q 036165 240 MVEK---DIVAMNAMVSGYVQRGLATEALNLVEEI----GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK--- 309 (566)
Q Consensus 240 ~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 309 (566)
..++ |...|-.+...+....-+.. +..|... ...+..+.+...|.+.......|+++.|...|......
T Consensus 406 ~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~ 484 (1018)
T KOG2002|consen 406 VLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE 484 (1018)
T ss_pred HHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh
Confidence 7554 55677777766666554444 6666554 34565688899999999999999999999999988654
Q ss_pred CCCCC------hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCchHHHHHHHHHHHHhCCC
Q 036165 310 GVEPD------VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT-ISSILPACASAANMRRGKEIHGCAIVMGVE 382 (566)
Q Consensus 310 ~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 382 (566)
...++ +.+--.+...+-..++.+.|.+.|+...+. .|.... |..++......++..+|...++.+.... .
T Consensus 485 ~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~ 561 (1018)
T KOG2002|consen 485 VANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-S 561 (1018)
T ss_pred hcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-c
Confidence 12222 223344667777788999999999999886 455443 4444444445678888999998888754 3
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHh------------cCChHHHHHHHHHhhhc
Q 036165 383 GDLHVRSALVDMYAKCGFISEARTLFDKMSE-----RNTVTWNSMIFGCAN------------HGYCDEAIELFNQMEER 445 (566)
Q Consensus 383 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~------------~~~~~~A~~~~~~~~~~ 445 (566)
.++..+..+.+.+.+...+..|.+-|..+.+ +|..+.-+|...|.+ .+..++|+++|.++.+.
T Consensus 562 ~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~ 641 (1018)
T KOG2002|consen 562 SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN 641 (1018)
T ss_pred CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc
Confidence 3666777788899999999989887766653 465666666665542 34568899999999998
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCCHHHH
Q 036165 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS----TEPDLFVW 521 (566)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~ 521 (566)
.|.|...=|.+.-+++..|++++|..+|.++.+. .. -...+|-.+.++|..+|++-.|.++|+... .+.++.+.
T Consensus 642 dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa-~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl 719 (1018)
T KOG2002|consen 642 DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREA-TS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVL 719 (1018)
T ss_pred CcchhhhccchhhhhhhccCchHHHHHHHHHHHH-Hh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHH
Confidence 8889999999999999999999999999999987 32 355679999999999999999999999876 34688899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhh
Q 036165 522 GALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 522 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 564 (566)
..|.+++.+.|.+.+|...+..++...|.++.+..+++-+..+
T Consensus 720 ~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kk 762 (1018)
T KOG2002|consen 720 HYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKK 762 (1018)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHH
Confidence 9999999999999999999999999999999999999887654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-19 Score=179.08 Aligned_cols=298 Identities=14% Similarity=0.078 Sum_probs=157.8
Q ss_pred HHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhc
Q 036165 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD---AFVVSSLIDMYSKC 227 (566)
Q Consensus 151 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~ 227 (566)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ...+..++..|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 444566777777777777777653 22344666666667777777777777777666432111 13455556666666
Q ss_pred CCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccH----HHHHHHHHHHhcCCCHHHHH
Q 036165 228 GSVEKAKKVFDEMVE---KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNV----VTWNTLISGFSKSGDQVMVS 300 (566)
Q Consensus 228 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~ 300 (566)
|++++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|.
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 666666666666643 23445566666666666666666666665543322111 12233344444455555555
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhC
Q 036165 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMG 380 (566)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 380 (566)
..++++.+.. +.+...+..+...+.+.|++++|.+.++++. +.+
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-----------------------------------~~~ 244 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVE-----------------------------------EQD 244 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----------------------------------HHC
Confidence 5555544431 1123344444444444455555555444444 332
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHH
Q 036165 381 VEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLT 458 (566)
Q Consensus 381 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 458 (566)
......++..++.+|.+.|++++|...++++.+ |+...+..++..+.+.|++++|..+++++.+. .|+..+++.++.
T Consensus 245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~-~P~~~~~~~l~~ 323 (389)
T PRK11788 245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR-HPSLRGFHRLLD 323 (389)
T ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CcCHHHHHHHHH
Confidence 222233444555555555555555555555443 44444455555556666666666666655543 344455555554
Q ss_pred HHhc---cCChHHHHHHHHHhHHhcCCCCChh
Q 036165 459 ACCH---VGLVELGQRLFNMMQEKYKIMPRTE 487 (566)
Q Consensus 459 ~~~~---~g~~~~a~~~~~~~~~~~~~~p~~~ 487 (566)
.+.. .|+.+++..+++++.++ ++.|++.
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHHH-HHhCCCC
Confidence 4432 33556666666666555 5555443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-19 Score=178.41 Aligned_cols=286 Identities=14% Similarity=0.128 Sum_probs=186.6
Q ss_pred HHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCChh
Q 036165 256 VQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD---VVSWTSVISGLVHNFCND 332 (566)
Q Consensus 256 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~ 332 (566)
...|++++|+..|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|...|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34444555555555544432 12233444444445555555555555554444321111 123444555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCc----HhHHHHHHHHHHhcCCHHHHHHHH
Q 036165 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGD----LHVRSALVDMYAKCGFISEARTLF 408 (566)
Q Consensus 333 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~ 408 (566)
+|..+|+++.+.. +.+..++..++..+...|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5555555555431 23344555555555555555555555555555433221 123455677778888888888888
Q ss_pred HhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC
Q 036165 409 DKMSE--R-NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLD-HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484 (566)
Q Consensus 409 ~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 484 (566)
+++.+ | +...+..+...+.+.|++++|.++++++.+..+.+ ..+++.++.++...|++++|...++++.+. .|
T Consensus 204 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p 280 (389)
T PRK11788 204 KKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YP 280 (389)
T ss_pred HHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC
Confidence 88764 3 35567778888999999999999999988763333 456788889999999999999999998865 56
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHhh
Q 036165 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLFVWGALLGACKN---HGNIELAEIAAKHLSE 546 (566)
Q Consensus 485 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 546 (566)
+...+..++..+.+.|++++|..+++++. ..|+..+++.++..+.. .|+.+++..+++++++
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 76777888999999999999999998876 55888888888877664 5588888888888875
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-18 Score=179.02 Aligned_cols=379 Identities=13% Similarity=0.021 Sum_probs=280.2
Q ss_pred HHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHc
Q 036165 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK---DIVAMNAMVSGYVQR 258 (566)
Q Consensus 182 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~ 258 (566)
+......+.+.|+++.|...|++.++. .|+...|..+..+|.+.|++++|++.++...+. +...|..+..++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 344566678899999999999999875 567888999999999999999999999998543 556888999999999
Q ss_pred CChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHH-------------HH------------c--CC
Q 036165 259 GLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM-------------RA------------K--GV 311 (566)
Q Consensus 259 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-------------~~------------~--~~ 311 (566)
|++++|+..|......+-. +......++..+........+...++.- .. . ..
T Consensus 208 g~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGF-RNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred CCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 9999999888766543211 1111111111111100001111111000 00 0 00
Q ss_pred CCC-hhhHHHHHHH---HHhcCChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcH
Q 036165 312 EPD-VVSWTSVISG---LVHNFCNDEAFDTFKEMLSQG-FCP-TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385 (566)
Q Consensus 312 ~~~-~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 385 (566)
.+. ...+..+... ....+++++|.+.|++..+.+ ..| ....+..+...+...|++++|...++..++..+. ..
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cH
Confidence 000 0011111111 122467899999999998765 233 3456777788888999999999999999886543 46
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc
Q 036165 386 HVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCH 462 (566)
Q Consensus 386 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 462 (566)
..+..+...+...|++++|...|++..+ .+...|..+...+...|++++|...|++..+..+.+...+..+..++.+
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH
Confidence 6788899999999999999999998765 4567889999999999999999999999999877788889999999999
Q ss_pred cCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCH-HH-------HHHHHHHHHhcCC
Q 036165 463 VGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDL-FV-------WGALLGACKNHGN 533 (566)
Q Consensus 463 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~-------~~~l~~~~~~~g~ 533 (566)
.|++++|+..++++... .+.++..++.+..++...|++++|.+.|++.. ..|+. .. ++..+..+...|+
T Consensus 446 ~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 446 EGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred CCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence 99999999999999874 34457889999999999999999999999976 33321 11 1112223345699
Q ss_pred HHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 534 IELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 534 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
+++|...++++++++|++...+..++.+|..+|
T Consensus 524 ~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g 556 (615)
T TIGR00990 524 FIEAENLCEKALIIDPECDIAVATMAQLLLQQG 556 (615)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999998876
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-18 Score=181.50 Aligned_cols=407 Identities=9% Similarity=0.011 Sum_probs=251.7
Q ss_pred CchHHHHHHHHHHhhcCChHHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHH
Q 036165 111 RLTQIATKLITFYTECQNIHHARMLFDEIPK---TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLK 187 (566)
Q Consensus 111 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 187 (566)
.++....-.+......|+.++|++++.+... .+...+..+...+...|++++|.++|++..+.. +.+......+..
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3445555566666677777777777766543 233346666677777777777777777766542 223444555556
Q ss_pred HHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHHcCChhHH
Q 036165 188 ACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE--K-DIVAMNAMVSGYVQRGLATEA 264 (566)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a 264 (566)
.+...|+.++|...++++++.. +.+.. +..+..++...|+.++|+..++++.+ | +...+..+...+...|..++|
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Confidence 6666777777777777776652 33444 66666666677777777777766633 2 334455556666666666667
Q ss_pred HHHHHHhhhCCCCccHH------HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh---hHHH
Q 036165 265 LNLVEEIGTPRVKPNVV------TWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN---DEAF 335 (566)
Q Consensus 265 ~~~~~~m~~~~~~p~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~ 335 (566)
+..++.... .|+.. ....++......+ ....+++ ++|+
T Consensus 170 l~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~------------------------------~~~~~r~~~ad~Al 216 (765)
T PRK10049 170 LGAIDDANL---TPAEKRDLEADAAAELVRLSFMPT------------------------------RSEKERYAIADRAL 216 (765)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccc------------------------------cChhHHHHHHHHHH
Confidence 666665443 22210 0000111110000 0111122 5566
Q ss_pred HHHHHHHHC-CCCCCHH-HHH----HHHHHHHccCchHHHHHHHHHHHHhCCC-CcHhHHHHHHHHHHhcCCHHHHHHHH
Q 036165 336 DTFKEMLSQ-GFCPTSA-TIS----SILPACASAANMRRGKEIHGCAIVMGVE-GDLHVRSALVDMYAKCGFISEARTLF 408 (566)
Q Consensus 336 ~~~~~m~~~-~~~~~~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 408 (566)
+.++.+.+. ...|+.. .+. ..+.++...|++++|+..++.+.+.+.+ |+. ....+..+|...|++++|+..|
T Consensus 217 ~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l 295 (765)
T PRK10049 217 AQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSIL 295 (765)
T ss_pred HHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHH
Confidence 666666543 1122211 111 1123334556667777777766665432 221 2222466777777777777777
Q ss_pred HhcCC--CC-----hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCC------------CC---HHHHHHHHHHHhccCCh
Q 036165 409 DKMSE--RN-----TVTWNSMIFGCANHGYCDEAIELFNQMEERKK------------LD---HLSFTAVLTACCHVGLV 466 (566)
Q Consensus 409 ~~~~~--~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------------~~---~~~~~~l~~~~~~~g~~ 466 (566)
+++.+ |. ......+..++...|++++|.++++++.+..+ |+ ...+..+...+...|++
T Consensus 296 ~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~ 375 (765)
T PRK10049 296 TELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDL 375 (765)
T ss_pred HHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCH
Confidence 77654 21 12344555567777888888888777776532 22 12456677788899999
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036165 467 ELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPD-LFVWGALLGACKNHGNIELAEIAAKHL 544 (566)
Q Consensus 467 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 544 (566)
++|+++++++... .+.+...+..++.++...|++++|++.++++. ..|+ ...+...+..+...|++++|+.+++++
T Consensus 376 ~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~l 453 (765)
T PRK10049 376 PQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDV 453 (765)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999874 45567788899999999999999999999987 4464 667777778889999999999999999
Q ss_pred hhhCCCCchHHH
Q 036165 545 SELEPESAANNM 556 (566)
Q Consensus 545 ~~~~p~~~~~~~ 556 (566)
++..|+++.+..
T Consensus 454 l~~~Pd~~~~~~ 465 (765)
T PRK10049 454 VAREPQDPGVQR 465 (765)
T ss_pred HHhCCCCHHHHH
Confidence 999999987654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.4e-18 Score=175.88 Aligned_cols=350 Identities=13% Similarity=0.014 Sum_probs=181.0
Q ss_pred hhcCChHHHHHHhccCCCC------CcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhH
Q 036165 124 TECQNIHHARMLFDEIPKT------NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGT 197 (566)
Q Consensus 124 ~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 197 (566)
.+..+|+..--+|...++. +..-.-.++..+.++|++++|+.+++........ +......++.+....|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHH
Confidence 3456666666666655541 2223444566667777777777777777665333 23334444455556777777
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCChhHHHHHHHHhhhC
Q 036165 198 GEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE---KDIVAMNAMVSGYVQRGLATEALNLVEEIGTP 274 (566)
Q Consensus 198 a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 274 (566)
|.+.++++.+.. +.+...+..+...+...|++++|...+++... .+...+..+...+...|++++|...++.+...
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 777777777653 34455566666666777777777777766632 23445666666666666666666666665443
Q ss_pred CCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 036165 275 RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354 (566)
Q Consensus 275 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 354 (566)
... +...+..+ ..+...|++++|...++.+.+....++...+..+..++...|++++|+..++++.+.. +.+...+.
T Consensus 174 ~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~ 250 (656)
T PRK15174 174 VPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRR 250 (656)
T ss_pred CCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 211 12222222 2345566666666666665544222233333344455555666666666666655432 22233333
Q ss_pred HHHHHHHccCchHH----HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 036165 355 SILPACASAANMRR----GKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHG 430 (566)
Q Consensus 355 ~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 430 (566)
.+...+...|++++ |...++.+.+..+. +.. .+..+...+...|
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~-------------------------------a~~~lg~~l~~~g 298 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVR-------------------------------IVTLYADALIRTG 298 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHH-------------------------------HHHHHHHHHHHCC
Confidence 44444444444442 34444444433221 333 4444444555555
Q ss_pred ChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHH
Q 036165 431 YCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT-EHYACMVDLLGRAGRLAEAYEMI 509 (566)
Q Consensus 431 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~ 509 (566)
++++|...+++..+..+.+...+..+..++...|++++|...++++... .|+. ..+..+..++...|++++|.+.|
T Consensus 299 ~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~~~~~~~~~a~al~~~G~~deA~~~l 375 (656)
T PRK15174 299 QNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE---KGVTSKWNRYAAAALLQAGKTSEAESVF 375 (656)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5555555555544443334444444455555555555555555554432 2222 12222334445555555555555
Q ss_pred HhcC
Q 036165 510 KTMS 513 (566)
Q Consensus 510 ~~~~ 513 (566)
+++.
T Consensus 376 ~~al 379 (656)
T PRK15174 376 EHYI 379 (656)
T ss_pred HHHH
Confidence 5443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-17 Score=172.96 Aligned_cols=352 Identities=8% Similarity=-0.042 Sum_probs=276.1
Q ss_pred HHhcCChHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHHHhccCCC---CCcchHHHHHHHHHhcCChHH
Q 036165 88 YIRDRALQSGKILHAQLIVSG--LARLTQIATKLITFYTECQNIHHARMLFDEIPK---TNIHRWIALTGAYARRGYHQE 162 (566)
Q Consensus 88 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 162 (566)
+.++.+|+.-.-++....++- -..+..-...++..+.+.|++++|..+++.... .+...+..++.+....|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 345677877666665554431 111222234456778888999999999987754 345566677778888999999
Q ss_pred HHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-
Q 036165 163 AVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV- 241 (566)
Q Consensus 163 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 241 (566)
|+..|+++.+.. +.+...+..+...+...|++++|...++++++.. +.+...+..+...+...|++++|...++.+.
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 999999999863 2345677778888899999999999999999864 4567788889999999999999999998773
Q ss_pred -CC-ChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHH
Q 036165 242 -EK-DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWT 319 (566)
Q Consensus 242 -~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 319 (566)
.| +...+..+ ..+...|++++|...++.+......++......+...+...|++++|...++.+.+.. +.+...+.
T Consensus 173 ~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~ 250 (656)
T PRK15174 173 EVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRR 250 (656)
T ss_pred hCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 23 33344343 3588899999999999998776434455555666788899999999999999998764 34677888
Q ss_pred HHHHHHHhcCChhH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 036165 320 SVISGLVHNFCNDE----AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395 (566)
Q Consensus 320 ~li~~~~~~g~~~~----A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 395 (566)
.+...+...|++++ |...|++..+.. +.+...+..+...+...|++++|...++.+.+..+. +......+..+|
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l 328 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 89999999999986 899999998763 445678889999999999999999999999987654 566777889999
Q ss_pred HhcCCHHHHHHHHHhcCC--CChhH-HHHHHHHHHhcCChHHHHHHHHHhhhc
Q 036165 396 AKCGFISEARTLFDKMSE--RNTVT-WNSMIFGCANHGYCDEAIELFNQMEER 445 (566)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~--~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~ 445 (566)
.+.|++++|...|+++.+ |+... +..+..++...|+.++|...|++..+.
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999998874 54433 344567788899999999999998876
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.3e-17 Score=171.62 Aligned_cols=426 Identities=10% Similarity=-0.015 Sum_probs=265.3
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC---CCcchHHH
Q 036165 73 SFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK---TNIHRWIA 149 (566)
Q Consensus 73 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 149 (566)
..+.++......+......|+.++|.+++....... +.+...+..+...+...|++++|..+|++..+ .+...+..
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~ 88 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRG 88 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 357778888999999999999999999999998733 34555688899999999999999999998543 45667888
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 036165 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS 229 (566)
Q Consensus 150 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 229 (566)
++..+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|...++++.+.. +.+...+..+..++...|.
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC
Confidence 9999999999999999999998862 33444 7788888899999999999999999975 4456666778888889999
Q ss_pred HHHHHHHHHhcCCCChh--------hHHHHHHHHH-----HcCCh---hHHHHHHHHhhhC-CCCccHH-HH----HHHH
Q 036165 230 VEKAKKVFDEMVEKDIV--------AMNAMVSGYV-----QRGLA---TEALNLVEEIGTP-RVKPNVV-TW----NTLI 287 (566)
Q Consensus 230 ~~~A~~~~~~~~~~~~~--------~~~~li~~~~-----~~g~~---~~a~~~~~~m~~~-~~~p~~~-~~----~~ll 287 (566)
.+.|++.++.... ++. ....++.... ..+++ ++|+..++.+.+. ...|+.. .+ ...+
T Consensus 166 ~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 166 SAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred hHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 9999999998865 221 1122222221 11223 6677777777643 1122211 11 1112
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHcc
Q 036165 288 SGFSKSGDQVMVSKLFQLMRAKGVE-PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCP---TSATISSILPACASA 363 (566)
Q Consensus 288 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~ 363 (566)
.++...|++++|...|+.+.+.+.. |+. .-..+..+|...|++++|+..|+++.+..... .......+..++...
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 3445567777777777777665422 221 11224556777777777777777766532111 122344445555666
Q ss_pred CchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCChHHHHHHHH
Q 036165 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN---TVTWNSMIFGCANHGYCDEAIELFN 440 (566)
Q Consensus 364 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~ 440 (566)
|++++|..+++.+.+..+. ....+.. ....|+ ...+..+...+...|+.++|++.++
T Consensus 324 g~~~eA~~~l~~~~~~~P~-~~~~~~~-------------------~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~ 383 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPP-FLRLYGS-------------------PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAR 383 (765)
T ss_pred ccHHHHHHHHHHHhhcCCc-eEeecCC-------------------CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666666554211 0000000 000011 1123334445555566666666666
Q ss_pred HhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCH
Q 036165 441 QMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR-TEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDL 518 (566)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~ 518 (566)
++....|.+...+..+...+...|++++|++.++++.+. .|+ ...+..++..+.+.|++++|..+++++. ..|+.
T Consensus 384 ~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l---~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 384 ELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL---EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 665555555555666666666666666666666665543 233 3444455555556666666666666555 33444
Q ss_pred HHHHHHHHH
Q 036165 519 FVWGALLGA 527 (566)
Q Consensus 519 ~~~~~l~~~ 527 (566)
.....+-+.
T Consensus 461 ~~~~~~~~~ 469 (765)
T PRK10049 461 PGVQRLARA 469 (765)
T ss_pred HHHHHHHHH
Confidence 333333333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-16 Score=165.85 Aligned_cols=455 Identities=10% Similarity=0.038 Sum_probs=292.4
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCCc-chHHHH--
Q 036165 74 FHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNI-HRWIAL-- 150 (566)
Q Consensus 74 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l-- 150 (566)
.|..+.+-..-.-...+.|++..|...+..+++......+.++ .++..+...|+.++|+..+++...++. ..+..+
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal 108 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA 108 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH
Confidence 3444554444445566788888888888888877643223344 777777777888888888887776533 333333
Q ss_pred HHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 036165 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSV 230 (566)
Q Consensus 151 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 230 (566)
...+...|++++|+++|+++.+.... +...+..++..+...++.++|.+.++.+.+. .|+...+..++..+...++.
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH
Confidence 44667778888888888888776322 3445555566667777777777777777664 34444444444444445555
Q ss_pred HHHHHHHHhcCC--C-ChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036165 231 EKAKKVFDEMVE--K-DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR 307 (566)
Q Consensus 231 ~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 307 (566)
.+|++.++++.+ | +...+..+..++.+.|-...|.++..+-... .+......+- .+.+.+..+
T Consensus 186 ~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~---f~~~~~~~l~--------~~~~a~~vr--- 251 (822)
T PRK14574 186 YDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL---VSAEHYRQLE--------RDAAAEQVR--- 251 (822)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc---cCHHHHHHHH--------HHHHHHHHh---
Confidence 557777777633 2 4455666666777777777776665542211 0111111100 011111111
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCH-H----HHHHHHHHHHccCchHHHHHHHHHHHHhCC
Q 036165 308 AKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ-GFCPTS-A----TISSILPACASAANMRRGKEIHGCAIVMGV 381 (566)
Q Consensus 308 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~-~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 381 (566)
.+..++..- -. +---.+.|+.-++.+... +-.|.. . ...-.+.++...+++.+++..++.+...+.
T Consensus 252 -~a~~~~~~~----~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~ 323 (822)
T PRK14574 252 -MAVLPTRSE----TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGY 323 (822)
T ss_pred -hcccccccc----hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC
Confidence 111110000 00 000124556666665542 111321 1 222445567778888888888888887776
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---------ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCC-----
Q 036165 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSER---------NTVTWNSMIFGCANHGYCDEAIELFNQMEERKK----- 447 (566)
Q Consensus 382 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----- 447 (566)
+....+..++.++|...+++++|..+++.+... +......|.-+|...+++++|..+++++.+..+
T Consensus 324 ~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~ 403 (822)
T PRK14574 324 KMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGV 403 (822)
T ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEec
Confidence 656667778888888888888888888877531 222246677888888888888888888887422
Q ss_pred -------CCH---HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC
Q 036165 448 -------LDH---LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP 516 (566)
Q Consensus 448 -------~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p 516 (566)
||+ ..+..++..+...|++.+|++.++.+... -+-|......+.+.+...|.+.+|++.++.+. ..|
T Consensus 404 ~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P 481 (822)
T PRK14574 404 YGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAP 481 (822)
T ss_pred cCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Confidence 222 23555677788999999999999999764 46678888999999999999999999998766 344
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHH
Q 036165 517 -DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNM 556 (566)
Q Consensus 517 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 556 (566)
+..+....+.++...|++++|..+.+.+++..|+++.+..
T Consensus 482 ~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~ 522 (822)
T PRK14574 482 RSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQE 522 (822)
T ss_pred ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHH
Confidence 5667778888888999999999999999999999986543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.9e-17 Score=159.38 Aligned_cols=420 Identities=14% Similarity=0.069 Sum_probs=302.2
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCC--CCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHH
Q 036165 142 TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK--QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219 (566)
Q Consensus 142 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 219 (566)
.|++..+.|.+-|...|++..+..+...+...... .-...|-.+.+++-..|++++|...|.+..+....-....+-.
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 35666777777777788888888888777664311 1233466677788888888888888888776542222334456
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHHcC----ChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhc
Q 036165 220 LIDMYSKCGSVEKAKKVFDEMVE--K-DIVAMNAMVSGYVQRG----LATEALNLVEEIGTPRVKPNVVTWNTLISGFSK 292 (566)
Q Consensus 220 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 292 (566)
+...+.+.|+++.+...|+.+.. | +..+...|...|+..+ ..+.|..++.+....- +.|...|..+...+..
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ 426 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh
Confidence 78888888888888888888833 2 4456666666666664 4566666666655432 4456677666665554
Q ss_pred CCCHHHHHHHHHHH----HHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCH------HHHHHHHHH
Q 036165 293 SGDQVMVSKLFQLM----RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ---GFCPTS------ATISSILPA 359 (566)
Q Consensus 293 ~~~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~------~~~~~ll~~ 359 (566)
. +...++.++..+ ...+..+.+...|.+...+...|++++|...|+..... ...+|. .+-..+...
T Consensus 427 ~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 T-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred c-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 4 444446666544 34555677888899999999999999999999888755 122333 233345555
Q ss_pred HHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHH
Q 036165 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAI 436 (566)
Q Consensus 360 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 436 (566)
.-..++.+.|.+.+..+.+..+. -+..|.-++.+....+...+|...+..+.. .++..+..+...+.....+..|.
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~ 584 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAK 584 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccc
Confidence 56677889999999998886432 334444444444455788889999988775 56677777888888888899999
Q ss_pred HHHHHhhhc--CCCCHHHHHHHHHHHhc------------cCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH
Q 036165 437 ELFNQMEER--KKLDHLSFTAVLTACCH------------VGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502 (566)
Q Consensus 437 ~~~~~~~~~--~~~~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 502 (566)
+-|+.+.+. ..+|..+..+|.+.|.. .+..+.|+++|.++... .+-|...-|.+.-+++..|++
T Consensus 585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~ 662 (1018)
T KOG2002|consen 585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRF 662 (1018)
T ss_pred cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCc
Confidence 988888776 55688887788776653 34567888888888763 345667778899999999999
Q ss_pred HHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCCCchHHHHHHHHHhhcC
Q 036165 503 AEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSEL--EPESAANNMLLTDLYANAG 566 (566)
Q Consensus 503 ~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g 566 (566)
.+|..+|.++. ......+|..+..+|...|++-.|+++|+..++. .-+++++...|+.++.+.|
T Consensus 663 ~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~ 730 (1018)
T KOG2002|consen 663 SEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAG 730 (1018)
T ss_pred hHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhh
Confidence 99999999987 2345678999999999999999999999999973 3467899999999998765
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.4e-18 Score=153.01 Aligned_cols=483 Identities=13% Similarity=0.065 Sum_probs=303.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHh----CCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC----CCcc-hHH
Q 036165 78 PAAYSERIEIYIRDRALQSGKILHAQLIVS----GLARLTQIATKLITFYTECQNIHHARMLFDEIPK----TNIH-RWI 148 (566)
Q Consensus 78 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~ 148 (566)
...+...+.-.-..|+-+.+..-+++-.-. ++..+-.+...|.+-|.......+|...++-+.+ ||.- .--
T Consensus 162 ~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkm 241 (840)
T KOG2003|consen 162 CGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKM 241 (840)
T ss_pred hhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeee
Confidence 344555555555566666555555432211 2222333344445555555556666666665544 2221 112
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHHCCCCCCcc----hHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 036165 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIF----VIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMY 224 (566)
Q Consensus 149 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 224 (566)
.+.+.+.+..++.+|++.|+-....-...+.. ..+.+...+.+.|.++.|...|+...+. .|+..+--.|+-++
T Consensus 242 nigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~ 319 (840)
T KOG2003|consen 242 NIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICA 319 (840)
T ss_pred eecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhh
Confidence 23445556666666666666555432112222 2233333455666666666666666654 35555444455555
Q ss_pred HhcCCHHHHHHHHHhcCC----------------CChhhHH-----HHHHHHHHcCC--hhHHHHHHHHhhhCCCCccHH
Q 036165 225 SKCGSVEKAKKVFDEMVE----------------KDIVAMN-----AMVSGYVQRGL--ATEALNLVEEIGTPRVKPNVV 281 (566)
Q Consensus 225 ~~~g~~~~A~~~~~~~~~----------------~~~~~~~-----~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~ 281 (566)
..-|+.++..+.|.+|.. |+....| ..+.-.-+.++ .++++-.--++...-+.|+-.
T Consensus 320 f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa 399 (840)
T KOG2003|consen 320 FAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA 399 (840)
T ss_pred eecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh
Confidence 556666666666666621 0111111 11122222111 111111111111111122210
Q ss_pred H---------------------HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh--cCChhHHHHHH
Q 036165 282 T---------------------WNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH--NFCNDEAFDTF 338 (566)
Q Consensus 282 ~---------------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~ 338 (566)
. -..-...+.+.|+++.|.+++....+..-......-+.|-..+.- -.++..|..+-
T Consensus 400 ~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqya 479 (840)
T KOG2003|consen 400 AGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYA 479 (840)
T ss_pred cccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHH
Confidence 0 001122466788888888888887665433333333333322222 33566666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CC
Q 036165 339 KEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RN 415 (566)
Q Consensus 339 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~ 415 (566)
+..+... +-+....+.-.......|++++|.+.+++.+...-......|| +.-.+...|++++|...|-++.. .+
T Consensus 480 d~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn 557 (840)
T KOG2003|consen 480 DIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNN 557 (840)
T ss_pred HHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhh
Confidence 6655432 3344444444445567789999999999998876554444454 34456788999999999987764 67
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 036165 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDL 495 (566)
Q Consensus 416 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 495 (566)
+...-.+...|....+...|++++-+....++.|+....-|...|-+.|+-.+|.+.+-.--. -++-+.++...|..-
T Consensus 558 ~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ay 635 (840)
T KOG2003|consen 558 AEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAY 635 (840)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHH
Confidence 777778888999999999999999999888999999999999999999999999988765543 466788999999999
Q ss_pred HHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 496 LGRAGRLAEAYEMIKTMS-TEPDLFVWGALLGAC-KNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 496 ~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
|....-+++|...|++.. .+|+..-|..++..| .+.|++++|..+|+...+..|++...+..|..+....|
T Consensus 636 yidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 636 YIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 999999999999999876 789999999888654 68999999999999999999999999999998876554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.4e-15 Score=154.10 Aligned_cols=428 Identities=9% Similarity=-0.011 Sum_probs=260.8
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCC---CcchHHHH
Q 036165 74 FHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKT---NIHRWIAL 150 (566)
Q Consensus 74 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l 150 (566)
.|.++.....++..+...|+.+.|...++..+.. -.........+...|...|++++|..+|+++.+. |...+..+
T Consensus 64 ~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gL 142 (822)
T PRK14574 64 GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGM 142 (822)
T ss_pred CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 3454333448888889999999999999999821 1122333334466888999999999999998762 45667788
Q ss_pred HHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 036165 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSV 230 (566)
Q Consensus 151 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 230 (566)
+..+...++.++|++.++++... .|+...+..++..+...++..+|.+.++++++.. +.+...+..+.....+.|-.
T Consensus 143 a~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~ 219 (822)
T PRK14574 143 IMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIV 219 (822)
T ss_pred HHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCc
Confidence 88999999999999999999875 5666666555444545566666999999999985 55777888899999999999
Q ss_pred HHHHHHHHhcCCC-ChhhHHH----HHHHHHHcC---------C---hhHHHHHHHHhhh-CCCCccH-----HHHHHHH
Q 036165 231 EKAKKVFDEMVEK-DIVAMNA----MVSGYVQRG---------L---ATEALNLVEEIGT-PRVKPNV-----VTWNTLI 287 (566)
Q Consensus 231 ~~A~~~~~~~~~~-~~~~~~~----li~~~~~~g---------~---~~~a~~~~~~m~~-~~~~p~~-----~~~~~ll 287 (566)
..|.++..+-+.- +...+.. .+.-.++.+ + .+.|+.-++.+.. .+-.|.. ....-.+
T Consensus 220 ~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl 299 (822)
T PRK14574 220 EPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRL 299 (822)
T ss_pred HHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHH
Confidence 9999988876431 1111111 111111111 1 1223333333332 1111211 1112233
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHc
Q 036165 288 SGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG-----FCPTSATISSILPACAS 362 (566)
Q Consensus 288 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~ll~~~~~ 362 (566)
-++...|+..++.+.++.+...+.+....+-..+.++|...+++++|+.+|+++.... ..++......|.-++..
T Consensus 300 ~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld 379 (822)
T PRK14574 300 GALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE 379 (822)
T ss_pred HHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh
Confidence 4445555555555555555555444333344555555555555555555555554322 01122223344444444
Q ss_pred cCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh-HHHHHHHHHHhcCChHHHHHHHHH
Q 036165 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV-TWNSMIFGCANHGYCDEAIELFNQ 441 (566)
Q Consensus 363 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~ 441 (566)
.+++++|..+++.+.+..+ .-...+ . .. .+...||-. .+..++..+...|+..+|++.+++
T Consensus 380 ~e~~~~A~~~l~~~~~~~p-~~~~~~-------~---~~-------~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~ 441 (822)
T PRK14574 380 SEQLDKAYQFAVNYSEQTP-YQVGVY-------G---LP-------GKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLED 441 (822)
T ss_pred cccHHHHHHHHHHHHhcCC-cEEecc-------C---CC-------CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444444444444443211 000000 0 00 000112211 233456667788889999999998
Q ss_pred hhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHH
Q 036165 442 MEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR-TEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLF 519 (566)
Q Consensus 442 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~ 519 (566)
+....|-|......+...+...|.+.+|++.++.+.. +.|+ ..+....+.++...|++++|..+.++.. ..|+..
T Consensus 442 l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~---l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 442 LSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES---LAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 8777888888888888888889999999988877664 3444 4566677788888889998888887766 345544
Q ss_pred HHHHHHH
Q 036165 520 VWGALLG 526 (566)
Q Consensus 520 ~~~~l~~ 526 (566)
....|-+
T Consensus 519 ~~~~l~r 525 (822)
T PRK14574 519 PSQELDR 525 (822)
T ss_pred hHHHHHH
Confidence 4444333
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-13 Score=130.20 Aligned_cols=464 Identities=13% Similarity=0.063 Sum_probs=349.4
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHH
Q 036165 89 IRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK---TNIHRWIALTGAYARRGYHQEAVT 165 (566)
Q Consensus 89 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 165 (566)
...-..++|+.++.++++.- +.+.. |.-+|++...++.|.+++....+ .+...|.+-...=-.+|+.+....
T Consensus 387 VelE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~k 461 (913)
T KOG0495|consen 387 VELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEK 461 (913)
T ss_pred HhccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHH
Confidence 33445666777777777763 22333 44566777778888888876654 477788887777778888888877
Q ss_pred HHHH----hHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHh
Q 036165 166 VFHE----MHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT--DAFVVSSLIDMYSKCGSVEKAKKVFDE 239 (566)
Q Consensus 166 ~~~~----m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 239 (566)
++.+ +...|+..+..-|..=...|-..|..-.+..+..-.+..|+.. -..+|..-...|.+.+.++-|..+|..
T Consensus 462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~ 541 (913)
T KOG0495|consen 462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH 541 (913)
T ss_pred HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence 7655 3456788888888888888888888888999988888888654 345788888889999999999999988
Q ss_pred cCC---CChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChh
Q 036165 240 MVE---KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVV 316 (566)
Q Consensus 240 ~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 316 (566)
..+ .+...|...+..=-..|..++...+|++.... ++-....|......+-..|+...|..++....+.. +.+..
T Consensus 542 alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnsee 619 (913)
T KOG0495|consen 542 ALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEE 619 (913)
T ss_pred HHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHH
Confidence 754 35566777777767788889999999888764 23334445555566677899999999999888763 33677
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHH
Q 036165 317 SWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396 (566)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 396 (566)
.|-+-+..-..+..+++|..+|.+.... .|+...|..-+..-.-.++.++|.++++..++.- +.-...|..+.+.+-
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHH
Confidence 8888888888999999999999988764 6777777777777777889999999998888753 334667888889999
Q ss_pred hcCCHHHHHHHHHhcCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 036165 397 KCGFISEARTLFDKMSE--RN-TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLF 473 (566)
Q Consensus 397 ~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 473 (566)
+.++++.|...|..-.+ |+ +..|-.+...--+.|+.-.|..++++..-..+.+...|...|+.-.+.|..+.|..+.
T Consensus 697 ~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999887775 54 4567777777778889999999999988888888899999999999999999999988
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCch
Q 036165 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAA 553 (566)
Q Consensus 474 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 553 (566)
.++.+. ++.+...|.--|....+.++-....+.+++. +-|+.+..++...+....++++|..-|+++++.+|++..
T Consensus 777 akALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD 852 (913)
T KOG0495|consen 777 AKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGD 852 (913)
T ss_pred HHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccch
Confidence 888774 5555666766666666666655555555554 345566666666677777777777777777777777777
Q ss_pred HHHHHHHHHhhcC
Q 036165 554 NNMLLTDLYANAG 566 (566)
Q Consensus 554 ~~~~l~~~~~~~g 566 (566)
++..+-..+...|
T Consensus 853 ~wa~fykfel~hG 865 (913)
T KOG0495|consen 853 AWAWFYKFELRHG 865 (913)
T ss_pred HHHHHHHHHHHhC
Confidence 7666666555544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-14 Score=129.75 Aligned_cols=413 Identities=15% Similarity=0.197 Sum_probs=282.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCC--h-------------------------HHH
Q 036165 80 AYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQN--I-------------------------HHA 132 (566)
Q Consensus 80 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~-------------------------~~A 132 (566)
+=+.+++. ..+|.+.++.-++++|.+.|.+.++.+...|++.-+-.+. + +-|
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 33555554 4578899999999999999998888888777766433221 1 112
Q ss_pred HHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCC
Q 036165 133 RMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT 212 (566)
Q Consensus 133 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 212 (566)
.-+|+ ....+..++..+|.++++--..+.|.+++++-.....+.+..+||.+|.+-.-. ..+++..+|+...+.|
T Consensus 197 dL~~E-~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 197 DLLFE-TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTP 271 (625)
T ss_pred HHHHh-hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCC
Confidence 22222 233456789999999999999999999999999888899999999999875433 3388999999999999
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHH----Hhc----CCCChhhHHHHHHHHHHcCChhH-HHHHHHHh----hhCCCCc-
Q 036165 213 DAFVVSSLIDMYSKCGSVEKAKKVF----DEM----VEKDIVAMNAMVSGYVQRGLATE-ALNLVEEI----GTPRVKP- 278 (566)
Q Consensus 213 ~~~~~~~l~~~~~~~g~~~~A~~~~----~~~----~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m----~~~~~~p- 278 (566)
|..++|+++.+..+.|+++.|.+.+ .+| .+|...+|..+|..+++.++..+ +..++.++ ..+..+|
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence 9999999999999999988766544 444 66888999999999999887744 44444443 3333333
Q ss_pred ---cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 036165 279 ---NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG----VEPD---VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCP 348 (566)
Q Consensus 279 ---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 348 (566)
|...|...+..|.+..+.+.|.++..-+.... +.|+ ..-|..+....+.....+.-...|+.|.-.-+-|
T Consensus 352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p 431 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFP 431 (625)
T ss_pred CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecC
Confidence 45677888899999999999999887765421 2222 2345567777888888999999999998887889
Q ss_pred CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh---HHHHHHHH
Q 036165 349 TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV---TWNSMIFG 425 (566)
Q Consensus 349 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~ 425 (566)
+..+...++.+....+.++-..++|..++..|..........++..+++..- .|+.. -+.....-
T Consensus 432 ~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~------------hp~tp~r~Ql~~~~ak 499 (625)
T KOG4422|consen 432 HSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL------------HPLTPEREQLQVAFAK 499 (625)
T ss_pred CchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC------------CCCChHHHHHHHHHHH
Confidence 9999999999999999999999999999988866555444444444443320 12111 11111111
Q ss_pred HHhcCChHHHH-HHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHH---HHHHHHHhcCC
Q 036165 426 CANHGYCDEAI-ELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA---CMVDLLGRAGR 501 (566)
Q Consensus 426 ~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~ 501 (566)
|+. ++.++. ..-.++.. ..-.....+.++-.+.+.|..++|.+++..+..+..-.|.....+ -+++.-.+.++
T Consensus 500 ~aa--d~~e~~e~~~~R~r~-~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~s 576 (625)
T KOG4422|consen 500 CAA--DIKEAYESQPIRQRA-QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNS 576 (625)
T ss_pred HHH--HHHHHHHhhHHHHHh-ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCC
Confidence 110 111111 11122222 233444555555666777777777777777755423334444444 34455556677
Q ss_pred HHHHHHHHHhcC
Q 036165 502 LAEAYEMIKTMS 513 (566)
Q Consensus 502 ~~~A~~~~~~~~ 513 (566)
...|..+++-|.
T Consensus 577 psqA~~~lQ~a~ 588 (625)
T KOG4422|consen 577 PSQAIEVLQLAS 588 (625)
T ss_pred HHHHHHHHHHHH
Confidence 777777777664
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7e-14 Score=138.23 Aligned_cols=469 Identities=12% Similarity=0.113 Sum_probs=323.9
Q ss_pred hcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhcc---CCCCCcchHHHHHHHHHhcCChHHHHHH
Q 036165 90 RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDE---IPKTNIHRWIALTGAYARRGYHQEAVTV 166 (566)
Q Consensus 90 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~ 166 (566)
..|+.++|..++.++++..+ .++..|-.|...|-..|+.+++...+-. +...|..-|..+.....+.|++++|.-.
T Consensus 151 arg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 34999999999999999874 5677899999999999999999887643 3345678899999999999999999999
Q ss_pred HHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHH----HHHHHHHHhcCCHHHHHHHHHhcCC
Q 036165 167 FHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV----SSLIDMYSKCGSVEKAKKVFDEMVE 242 (566)
Q Consensus 167 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 242 (566)
|.+..+.. +++...+--=...|-+.|+...|.+.+.++.....+.|..-+ -..++.+...++-+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999874 334444445566678899999999999999887543333322 3356677778888999999988844
Q ss_pred --C---ChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCc---------------------------cHHHHHHHHHHH
Q 036165 243 --K---DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP---------------------------NVVTWNTLISGF 290 (566)
Q Consensus 243 --~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---------------------------~~~~~~~ll~~~ 290 (566)
. +...++.++..+.+...++.+...+..+......+ +... ..++-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhh
Confidence 2 44578999999999999999999888876622222 2222 1233344
Q ss_pred hcCCCHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHH
Q 036165 291 SKSGDQVMVSKLFQLMRAKG--VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRR 368 (566)
Q Consensus 291 ~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 368 (566)
...+..+....+.....+.. ..-++..|.-+..+|...|++.+|+.+|..+......-+...|..+..++...|..+.
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 45555555666666666655 3335677888889999999999999999998877656667788888889999999999
Q ss_pred HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh------------HHHHHHHHHHhcCChHHHH
Q 036165 369 GKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV------------TWNSMIFGCANHGYCDEAI 436 (566)
Q Consensus 369 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~l~~~~~~~~~~~~A~ 436 (566)
|.+.++.++...+. +......|...+.+.|+.++|.+.+..+..||.. ........+.+.|+.++=+
T Consensus 468 A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 468 AIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999998886543 5667777888889999999999998887654411 1111122233334333322
Q ss_pred HHHHHhh----------------------------------------hcCC-----------C--------------CH-
Q 036165 437 ELFNQME----------------------------------------ERKK-----------L--------------DH- 450 (566)
Q Consensus 437 ~~~~~~~----------------------------------------~~~~-----------~--------------~~- 450 (566)
.+-..|. .... + +-
T Consensus 547 ~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwf 626 (895)
T KOG2076|consen 547 NTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWF 626 (895)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHH
Confidence 2111111 0000 0 00
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChh----HHHHHHHHHHhcCCHHHHHHHHHhcCC------CCC-HH
Q 036165 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTE----HYACMVDLLGRAGRLAEAYEMIKTMST------EPD-LF 519 (566)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~------~p~-~~ 519 (566)
..+.-++.++++.+++++|..+...+.+.+-+.-+.. .-...+.+....+++..|.+.++.|.. .|. ..
T Consensus 627 el~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~ 706 (895)
T KOG2076|consen 627 ELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLN 706 (895)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 1134556678888888888888887776543333333 223445666677888888777776651 121 22
Q ss_pred HHHHHHHH-----------------------------------HHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHH
Q 036165 520 VWGALLGA-----------------------------------CKNHGNIELAEIAAKHLSELEPESAANNMLLTDLY 562 (566)
Q Consensus 520 ~~~~l~~~-----------------------------------~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 562 (566)
.|+...+. ....+.+.-|...+-++...+|++|.....||-.+
T Consensus 707 l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglaf 784 (895)
T KOG2076|consen 707 LWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAF 784 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 23311111 22335678888889899999999998888877654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.4e-15 Score=132.85 Aligned_cols=337 Identities=13% Similarity=0.100 Sum_probs=216.3
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHc--ccCChhHH-HHHHHHHHHcCCCCchhHHHHH
Q 036165 144 IHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACG--HLSDIGTG-EKIHSLVLKHSFGTDAFVVSSL 220 (566)
Q Consensus 144 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~l 220 (566)
+.+=|.|+. ++.+|...++.-+|+.|.+.|++.+...-..+++..+ ...+..-+ .+.|-.|.+.| ..+..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 345555555 4568999999999999999998888776666665432 22222221 22333333333 2233333
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHH
Q 036165 221 IDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVS 300 (566)
Q Consensus 221 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 300 (566)
+.|++.+ ++-+...++..++..+|.++|+--..+.|.+++++-.....+.+..+||.+|.+-+-. ...
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGK 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccH
Confidence 2344433 5555556667778888888888888888888888877777777888888877664432 226
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHH-HHHHHHH
Q 036165 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE----AFDTFKEMLSQGFCPTSATISSILPACASAANMRR-GKEIHGC 375 (566)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~ 375 (566)
+++.+|....+.||..|+|+++++..+.|+++. |.+++.+|++.|+.|+..+|..++..+++.++..+ +..++..
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 777788777788888888888888888887653 45677778888888888888888887777777644 2333333
Q ss_pred HH----HhCCCC----cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CC---hhHHHHHHHHHHhcCChHHHH
Q 036165 376 AI----VMGVEG----DLHVRSALVDMYAKCGFISEARTLFDKMSE--------RN---TVTWNSMIFGCANHGYCDEAI 436 (566)
Q Consensus 376 ~~----~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~---~~~~~~l~~~~~~~~~~~~A~ 436 (566)
+. ...++| +...|...+..+.+..+.+-|.++..-... ++ ..-|..+....++....+...
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 222222 344555666666677777777776554442 11 123555666667777777778
Q ss_pred HHHHHhhhc-CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 036165 437 ELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR 498 (566)
Q Consensus 437 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 498 (566)
.+|+.|.-. .-|+..+...++++..-.|.++-.-++|..++.- |...+.....-+...+++
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~-ght~r~~l~eeil~~L~~ 480 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY-GHTFRSDLREEILMLLAR 480 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHhc
Confidence 888887777 6777777777778777777777777777777654 543333333333333333
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-12 Score=125.37 Aligned_cols=463 Identities=12% Similarity=0.074 Sum_probs=379.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC--------CCcchHHHHHHHH
Q 036165 83 ERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK--------TNIHRWIALTGAY 154 (566)
Q Consensus 83 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~ 154 (566)
.+.-++++...++.|+.++..+.+. ++.++.++-.-...--..|+.+...+++++-.. -|...|..=...|
T Consensus 411 dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 411 DLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 3445666677788899999988665 567888887777777788999988888875432 3555788888888
Q ss_pred HhcCChHHHHHHHHHhHHCCCCCC--cchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 036165 155 ARRGYHQEAVTVFHEMHIQGLKQN--IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK 232 (566)
Q Consensus 155 ~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 232 (566)
-..|..-.+..+.......|+.-. ..||..-...|.+.+.++-|..+|...++. ++.+..+|...+..--..|..+.
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHH
Confidence 888999889999988888876533 348888888999999999999999999986 46677888888888888899999
Q ss_pred HHHHHHhcCC---CChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036165 233 AKKVFDEMVE---KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK 309 (566)
Q Consensus 233 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 309 (566)
...+|.+... +....|-.....+-..|+...|..++....+.. +-+...+..-+.......+++.|..+|.+....
T Consensus 569 l~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 569 LEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 9999999843 456678888888888999999999999988764 336678888889999999999999999988764
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHH
Q 036165 310 GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPT-SATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR 388 (566)
Q Consensus 310 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 388 (566)
.|+...|.--+..-.-.+..++|..++++.++. -|+ ...|..+.+.+-+.++.+.|+..|..-.+. ++..+..+
T Consensus 648 --sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLW 722 (913)
T KOG0495|consen 648 --SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLW 722 (913)
T ss_pred --CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHH
Confidence 678888877777777789999999999998875 355 456777888899999999999888776554 33467788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCC
Q 036165 389 SALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGL 465 (566)
Q Consensus 389 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 465 (566)
..|...-.+.|.+-.|..++++..- .+...|-..|..-.+.|+.+.|..++.+..+.++.+...|..-|....+.++
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 8899999999999999999998764 4678899999999999999999999999999888888899998888877777
Q ss_pred hHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036165 466 VELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAEIAAKH 543 (566)
Q Consensus 466 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 543 (566)
-......+++. +-|+.+.-.+...+....+++.|.+.|++.. ..| ...+|.-+...+.++|.-+.-.+++++
T Consensus 803 kTks~DALkkc------e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~ 876 (913)
T KOG0495|consen 803 KTKSIDALKKC------EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKK 876 (913)
T ss_pred chHHHHHHHhc------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 55555554433 4477778888899999999999999999988 334 467788888889999999999999999
Q ss_pred HhhhCCCCchHHHHHH
Q 036165 544 LSELEPESAANNMLLT 559 (566)
Q Consensus 544 ~~~~~p~~~~~~~~l~ 559 (566)
....+|.....+...+
T Consensus 877 c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 877 CETAEPTHGELWQAVS 892 (913)
T ss_pred HhccCCCCCcHHHHHh
Confidence 9999998877665544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.9e-13 Score=122.26 Aligned_cols=447 Identities=12% Similarity=0.099 Sum_probs=338.5
Q ss_pred cCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC--CCcc-hHHHHHHHHHhcCChHHHHHHH
Q 036165 91 DRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK--TNIH-RWIALTGAYARRGYHQEAVTVF 167 (566)
Q Consensus 91 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~ 167 (566)
++++..|+.++++++... ..+..++-..+.+-.++..++.|+.++++... |.+. .|...+..=-.-|+...|.++|
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 567788999999999877 46777888889999999999999999998765 3332 3555555555679999999999
Q ss_pred HHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----
Q 036165 168 HEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK---- 243 (566)
Q Consensus 168 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 243 (566)
++-.+ ..|+...|.+.|..-.+.+.++.|..+++..+-. .|++..|-.....-.++|....|..+|+...+.
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 99877 5899999999999999999999999999998864 599999999999999999999999999988542
Q ss_pred --ChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCcc--HHHHHHHHHHHhcCCCHHHHHHH--------HHHHHHcCC
Q 036165 244 --DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN--VVTWNTLISGFSKSGDQVMVSKL--------FQLMRAKGV 311 (566)
Q Consensus 244 --~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~--------~~~~~~~~~ 311 (566)
+...+.+....=.+++.++.|.-+|+-..+. ++-+ ...|......--+-|+.....+. ++.+++. -
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-n 318 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-N 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-C
Confidence 2334555555556678888998888877654 2222 33444444443445655444333 2223332 2
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--HHH---HH-H----HHHHccCchHHHHHHHHHHHHhCC
Q 036165 312 EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA--TIS---SI-L----PACASAANMRRGKEIHGCAIVMGV 381 (566)
Q Consensus 312 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~---~l-l----~~~~~~~~~~~a~~~~~~~~~~~~ 381 (566)
+-|-.+|--.++.-...|+.+...++|+..+.. ++|-.. .+. -+ + -.-....+.+.+++++...++. +
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-I 396 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-I 396 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-c
Confidence 447778888888888899999999999999875 455331 111 11 1 1123567899999999999883 3
Q ss_pred CCcHhHHHHHHHHH----HhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHH
Q 036165 382 EGDLHVRSALVDMY----AKCGFISEARTLFDKMSE--RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTA 455 (566)
Q Consensus 382 ~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 455 (566)
+....+|..+--+| .++.++..|.+++..... |...++..-|..-.+.++++.+..+|++..+-.|.|..+|..
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~k 476 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSK 476 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHH
Confidence 33455555544444 578899999999987764 888889988998899999999999999999988889999999
Q ss_pred HHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHH-----
Q 036165 456 VLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLFVWGALLGACK----- 529 (566)
Q Consensus 456 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~----- 529 (566)
....-...|+.+.|..+|..+++...+......|.+.|+.=...|.++.|..++++.+ ..+-..+|.+...--.
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~ 556 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEG 556 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhcccccc
Confidence 9998899999999999999998763344445677888888889999999999999988 3355557777664433
Q ss_pred hcC-----------CHHHHHHHHHHHhh
Q 036165 530 NHG-----------NIELAEIAAKHLSE 546 (566)
Q Consensus 530 ~~g-----------~~~~A~~~~~~~~~ 546 (566)
+.| ....|..+|+++..
T Consensus 557 ~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 557 QEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred ccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 334 56788888888874
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4e-13 Score=126.25 Aligned_cols=479 Identities=10% Similarity=-0.006 Sum_probs=327.2
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhc--cCCCCCcchHHHHHHH
Q 036165 76 LSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFD--EIPKTNIHRWIALTGA 153 (566)
Q Consensus 76 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~li~~ 153 (566)
.+.+-+..+++-+..+.++..|.-+-+.+...+. ||.-.--+.+.+.-.|+.+.|..+.. .+.+.|.........+
T Consensus 14 ~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~--dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~ 91 (611)
T KOG1173|consen 14 LSLEKYRRLVRDALMQHRYKTALFWADKVAGLTN--DPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKC 91 (611)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccC--ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 4456677788888888888888888888876664 44444447788888888888887764 4556788888888999
Q ss_pred HHhcCChHHHHHHHHH----hHHCC---------CCCCcch----HHHHHHH-------HcccCChhHHHHHHHHHHHcC
Q 036165 154 YARRGYHQEAVTVFHE----MHIQG---------LKQNIFV----IPSVLKA-------CGHLSDIGTGEKIHSLVLKHS 209 (566)
Q Consensus 154 ~~~~g~~~~A~~~~~~----m~~~g---------~~p~~~~----~~~ll~~-------~~~~~~~~~a~~~~~~~~~~g 209 (566)
+.+..++++|+.++.. +.... +.+|..- -+.-.+. +....+.++|...+.+.+..
T Consensus 92 l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~- 170 (611)
T KOG1173|consen 92 LVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA- 170 (611)
T ss_pred HHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc-
Confidence 9999999999999882 21100 1111111 1111111 22334455666666555433
Q ss_pred CCCchhHHHHHHHHHHhc-CCHHHHHHHHHhcC-----CCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHH
Q 036165 210 FGTDAFVVSSLIDMYSKC-GSVEKAKKVFDEMV-----EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW 283 (566)
Q Consensus 210 ~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 283 (566)
|...+..+...-... -..++-..+|+.+. ..++.....+.....-...-++....-.+-.-.+..-+....
T Consensus 171 ---D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll 247 (611)
T KOG1173|consen 171 ---DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLL 247 (611)
T ss_pred ---chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHH
Confidence 233222222111110 01112222222210 011111111111110000000000000000111233445555
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036165 284 NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363 (566)
Q Consensus 284 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 363 (566)
..-..-|...+++.+..++.+.+.+. .++....+-.-|.++...|+..+-..+=.+|.+. .+....+|-.+.--|...
T Consensus 248 ~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 248 AEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHh
Confidence 56666777889999999999998876 3556667777788999999999988888888876 366678899999999999
Q ss_pred CchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHH
Q 036165 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFN 440 (566)
Q Consensus 364 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~ 440 (566)
|+.++|+..+.+....+.. -...|-.+...|.-.|.-++|+..+....+ .....+--+..-|.+.++.+.|.+.|.
T Consensus 326 ~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred cCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999998765433 346788899999999999999998876554 222233335566888999999999999
Q ss_pred HhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhc-CCC----CChhHHHHHHHHHHhcCCHHHHHHHHHhcC--
Q 036165 441 QMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY-KIM----PRTEHYACMVDLLGRAGRLAEAYEMIKTMS-- 513 (566)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 513 (566)
+.....|.|+..++-+.-.....+.+.+|..+|+...... .+. -...+++.|+.+|.+.+++++|...+++..
T Consensus 405 ~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 405 QALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred HHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 9999889999999999988889999999999999887320 011 134568899999999999999999999987
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHh
Q 036165 514 TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563 (566)
Q Consensus 514 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 563 (566)
.+.+..++.++.-.|...|+++.|+..|.+++.+.|+|...-..|+....
T Consensus 485 ~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 485 SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999888888887654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.3e-11 Score=111.99 Aligned_cols=440 Identities=11% Similarity=0.066 Sum_probs=326.1
Q ss_pred chHHHHHHHHHHhhcCChHHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcc-hHHHHHH
Q 036165 112 LTQIATKLITFYTECQNIHHARMLFDEIPK---TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIF-VIPSVLK 187 (566)
Q Consensus 112 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~ 187 (566)
+...+-...+.-...+++..|+.+|++... ++...|-.-+..=.++.....|..++++.... -|-+. .|-.-+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHH
Confidence 444454455555566778889999998765 57778999999999999999999999999875 34332 2333444
Q ss_pred HHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc--CCCChhhHHHHHHHHHHcCChhHHH
Q 036165 188 ACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM--VEKDIVAMNAMVSGYVQRGLATEAL 265 (566)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~ 265 (566)
.--..|++..|.++|+.-.+ ..|+...|.+.++.-.+...++.|..+++.. ..|++.+|-.....=.++|....|.
T Consensus 150 mEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHH
Confidence 44567999999999999887 4899999999999999999999999999998 5789999999999999999999999
Q ss_pred HHHHHhhhC-CC-CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChhHHHH-----
Q 036165 266 NLVEEIGTP-RV-KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD--VVSWTSVISGLVHNFCNDEAFD----- 336 (566)
Q Consensus 266 ~~~~~m~~~-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~----- 336 (566)
.+|....+. |- .-+...|.+...--.+...++.|.-++.-.++. ++.+ ...|.....---+-|+.....+
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 999987652 21 112333444444444567788999999888776 2222 3344444443344565544333
Q ss_pred ---HHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcH------hHHHHHHH---HHHhcCCHHHH
Q 036165 337 ---TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL------HVRSALVD---MYAKCGFISEA 404 (566)
Q Consensus 337 ---~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~---~~~~~g~~~~A 404 (566)
-|+.+++.+ +.|..++-..+..-...|+.+...++++.++..-++.+. .+|.-+=- .-....+++.+
T Consensus 307 Rk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 307 RKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 245555543 667778888888888899999999999999876443221 12211111 11346789999
Q ss_pred HHHHHhcCC--C-ChhHHHHH----HHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhH
Q 036165 405 RTLFDKMSE--R-NTVTWNSM----IFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477 (566)
Q Consensus 405 ~~~~~~~~~--~-~~~~~~~l----~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 477 (566)
..+|+...+ | ...|+.-+ ..--.++.+...|.+++...+.. -|-..+|...|..-.+.+.++.+.+++++..
T Consensus 386 r~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~-cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 386 RQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK-CPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc-CCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999987775 2 33344443 33445688999999999988764 5667789999998899999999999999999
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCch
Q 036165 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPD----LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAA 553 (566)
Q Consensus 478 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 553 (566)
+- + +.+..+|......=...|+.+.|..+|+-+..+|. ...|.+.|.--...|.++.|..+++++++..+...
T Consensus 465 e~-~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k- 541 (677)
T KOG1915|consen 465 EF-S-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK- 541 (677)
T ss_pred hc-C-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-
Confidence 64 2 34567888888888899999999999999886663 45688888888899999999999999999877655
Q ss_pred HHHHHHHH
Q 036165 554 NNMLLTDL 561 (566)
Q Consensus 554 ~~~~l~~~ 561 (566)
+++..+..
T Consensus 542 vWisFA~f 549 (677)
T KOG1915|consen 542 VWISFAKF 549 (677)
T ss_pred HHHhHHHH
Confidence 55555443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4e-12 Score=126.10 Aligned_cols=422 Identities=13% Similarity=0.074 Sum_probs=300.1
Q ss_pred HhhcCChHHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHH
Q 036165 123 YTECQNIHHARMLFDEIPK---TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGE 199 (566)
Q Consensus 123 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 199 (566)
....|++++|.+++.++.+ .+...|.+|...|-..|+.++++..+-..-..+ +-|...|..+.....+.|+++.|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHH
Confidence 3344999999999999876 356789999999999999999999876655443 346678889999999999999999
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh----h----hHHHHHHHHHHcCChhHHHHHHHHh
Q 036165 200 KIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDI----V----AMNAMVSGYVQRGLATEALNLVEEI 271 (566)
Q Consensus 200 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~----~~~~li~~~~~~g~~~~a~~~~~~m 271 (566)
-.+.++++.. +++...+-.-...|-+.|+...|.+-|.++.+-++ . .-...+..+...++-+.|.+.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999986 55666655678889999999999999999854322 2 2223456677777779999988887
Q ss_pred hh-CCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC---------------------------ChhhHHHHHH
Q 036165 272 GT-PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP---------------------------DVVSWTSVIS 323 (566)
Q Consensus 272 ~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------~~~~~~~li~ 323 (566)
.. .+-..+...++.++..+.+...++.+......+.....++ +...+ -++-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhh
Confidence 65 2234556678888889999999999988888776622222 22221 2233
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCH
Q 036165 324 GLVHNFCNDEAFDTFKEMLSQGFCPT--SATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFI 401 (566)
Q Consensus 324 ~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 401 (566)
++.+....+....+.....+..+.|+ ...|.-+..++.+.|++..|..++..+......-+..+|-.+..+|...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 44555555566666666666664443 4568899999999999999999999999876666788999999999999999
Q ss_pred HHHHHHHHhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhc---------CCCCHHHHHHHHHHHhccCChHHH
Q 036165 402 SEARTLFDKMSE--R-NTVTWNSMIFGCANHGYCDEAIELFNQMEER---------KKLDHLSFTAVLTACCHVGLVELG 469 (566)
Q Consensus 402 ~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~a 469 (566)
++|...|+++.. | +...--.|...+.+.|+.++|.+.++.+... ..|+..........+...|+.++=
T Consensus 466 e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 999999999886 3 3445555667788999999999999986522 123333333344455566665553
Q ss_pred HHHHHHhHHhc--------------------------------------------------------------CCCCC--
Q 036165 470 QRLFNMMQEKY--------------------------------------------------------------KIMPR-- 485 (566)
Q Consensus 470 ~~~~~~~~~~~--------------------------------------------------------------~~~p~-- 485 (566)
..+-..|+..+ ++..+
T Consensus 546 i~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddw 625 (895)
T KOG2076|consen 546 INTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDW 625 (895)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHH
Confidence 33322222110 00000
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCCHH---HH-HHHHHHHHhcCCHHHHHHHHHHHhhh
Q 036165 486 TEHYACMVDLLGRAGRLAEAYEMIKTMST----EPDLF---VW-GALLGACKNHGNIELAEIAAKHLSEL 547 (566)
Q Consensus 486 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p~~~---~~-~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (566)
-..+.-++..+.+.|++++|+.++..+.. ..+.. .+ ...+.++...+++..|...++.++..
T Consensus 626 fel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 626 FELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 01223466778888888888888877761 12222 22 34445667888888888888888865
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.9e-16 Score=143.98 Aligned_cols=256 Identities=15% Similarity=0.129 Sum_probs=89.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036165 285 TLISGFSKSGDQVMVSKLFQLMRAKG-VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363 (566)
Q Consensus 285 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 363 (566)
.+...+.+.|++++|.++++...... ...+...|..+.......++++.|...++++...+. -+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 45667777888888888886544433 233455555666666777888888888888876542 244445555555 577
Q ss_pred CchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHhcCChHHHHHH
Q 036165 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE-----RNTVTWNSMIFGCANHGYCDEAIEL 438 (566)
Q Consensus 364 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~ 438 (566)
+++++|..+.....+.. +++..+..++..+.+.++++++..+++.+.. .+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777766655433 3445556667777777777777777766431 3555666667777777777777777
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCC
Q 036165 439 FNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEP 516 (566)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p 516 (566)
+++..+..|.|......++..+...|+.+++.++++..... .+.|+..+..+..+|...|+.++|+.++++.. .+.
T Consensus 169 ~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 169 YRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 77777766666777777777777777777777777777664 24555666777777777777777777777765 233
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036165 517 DLFVWGALLGACKNHGNIELAEIAAKHLSE 546 (566)
Q Consensus 517 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (566)
|+.+...+..++...|+.++|.++.+++++
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 666667777777777777777777776654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.6e-13 Score=130.18 Aligned_cols=256 Identities=12% Similarity=-0.000 Sum_probs=149.9
Q ss_pred HHcCChhHHHHHHHHhhhCCCCccHHHHH--HHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH
Q 036165 256 VQRGLATEALNLVEEIGTPRVKPNVVTWN--TLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333 (566)
Q Consensus 256 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 333 (566)
.+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.+.++.+.+.. +-++.....+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 4455555555555555432 23322111 12334444555555555555554442 2234444455555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 036165 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413 (566)
Q Consensus 334 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 413 (566)
|.+++..+.+.+..++. ....+- ...+..++.......+.+...++++...+
T Consensus 206 a~~~l~~l~k~~~~~~~-~~~~l~---------------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~ 257 (398)
T PRK10747 206 LLDILPSMAKAHVGDEE-HRAMLE---------------------------QQAWIGLMDQAMADQGSEGLKRWWKNQSR 257 (398)
T ss_pred HHHHHHHHHHcCCCCHH-HHHHHH---------------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCH
Confidence 55555555544322111 110000 01222333333344455666666666653
Q ss_pred ---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHH
Q 036165 414 ---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYA 490 (566)
Q Consensus 414 ---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 490 (566)
.++.....+...+...|+.++|.+++++..+ .+++.... ++.+....++.+++.+..+...++ .+-|+..+.
T Consensus 258 ~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l 332 (398)
T PRK10747 258 KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWS 332 (398)
T ss_pred HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHH
Confidence 4566677777788888888888888877776 34454322 233334557888888888887764 344556677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Q 036165 491 CMVDLLGRAGRLAEAYEMIKTMS-TEPDLFVWGALLGACKNHGNIELAEIAAKHLSEL 547 (566)
Q Consensus 491 ~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (566)
.+...+.+.|++++|.+.|+++. ..|+..++..+...+.+.|+.++|.+.+++.+.+
T Consensus 333 ~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 333 TLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 78888888888888888888877 5588888888888888888888888888888764
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-12 Score=126.65 Aligned_cols=232 Identities=8% Similarity=0.038 Sum_probs=156.5
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHH
Q 036165 326 VHNFCNDEAFDTFKEMLSQGFCPTSATIS--SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISE 403 (566)
Q Consensus 326 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 403 (566)
...|+++.|...+.++.+. .|+..... .....+...|+++.|...++.+.+..+. ++.....+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHH
Confidence 4455555555555555432 23322111 2233444555555555555555554432 45556666666666666666
Q ss_pred HHHHHHhcCCC---Ch--------hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHH
Q 036165 404 ARTLFDKMSER---NT--------VTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRL 472 (566)
Q Consensus 404 A~~~~~~~~~~---~~--------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 472 (566)
|.+++..+.+. +. ..|..++.......+.+...++++.+.+..+.++.....+..++...|+.++|.++
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~ 285 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQI 285 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 66666665541 11 12333344444455667777888887766777888999999999999999999999
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC
Q 036165 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550 (566)
Q Consensus 473 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 550 (566)
+++..+. +|+.... ++.+....++.+++.+..++.. ..| |+..+..+...|.+.|++++|.+.|+++++..|+
T Consensus 286 L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 286 ILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred HHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 9998864 5555322 3344456699999999999887 345 5666889999999999999999999999999998
Q ss_pred CchHHHHHHHHHhhcC
Q 036165 551 SAANNMLLTDLYANAG 566 (566)
Q Consensus 551 ~~~~~~~l~~~~~~~g 566 (566)
+.. +..|+.++.++|
T Consensus 361 ~~~-~~~La~~~~~~g 375 (398)
T PRK10747 361 AYD-YAWLADALDRLH 375 (398)
T ss_pred HHH-HHHHHHHHHHcC
Confidence 755 668999998876
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-15 Score=142.18 Aligned_cols=242 Identities=19% Similarity=0.132 Sum_probs=92.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc
Q 036165 320 SVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT-ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC 398 (566)
Q Consensus 320 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 398 (566)
.+...+...|++++|++++++......+|+... +..+...+...++++.|...++.+...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 345666777777777777755444332333333 344445556677777777777777765544 45556666666 577
Q ss_pred CCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHhhhc--CCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 036165 399 GFISEARTLFDKMSE--RNTVTWNSMIFGCANHGYCDEAIELFNQMEER--KKLDHLSFTAVLTACCHVGLVELGQRLFN 474 (566)
Q Consensus 399 g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 474 (566)
+++++|..++...-+ ++...+..++..+...++++++.++++++... .+.+...|..+...+.+.|+.++|++.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777777765533 45555666677777777777777777776654 34566667777777777777777777777
Q ss_pred HhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC
Q 036165 475 MMQEKYKIMP-RTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPES 551 (566)
Q Consensus 475 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 551 (566)
++.+. .| |......++..+...|+.+++.++++... .+.|+..|..+..+|...|+.++|...++++.+.+|+|
T Consensus 171 ~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 171 KALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 77764 34 46667777777777777777666666554 23455667777777777777777777777777777777
Q ss_pred chHHHHHHHHHhhcC
Q 036165 552 AANNMLLTDLYANAG 566 (566)
Q Consensus 552 ~~~~~~l~~~~~~~g 566 (566)
+.....++.++...|
T Consensus 248 ~~~~~~~a~~l~~~g 262 (280)
T PF13429_consen 248 PLWLLAYADALEQAG 262 (280)
T ss_dssp HHHHHHHHHHHT---
T ss_pred ccccccccccccccc
Confidence 777777777777655
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-12 Score=118.51 Aligned_cols=447 Identities=12% Similarity=0.091 Sum_probs=315.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHH-HHHHHHHhhcCChHHHHHHhc----cCCCCC----cchHHH
Q 036165 79 AAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIA-TKLITFYTECQNIHHARMLFD----EIPKTN----IHRWIA 149 (566)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~----~~~~~~----~~~~~~ 149 (566)
..+..+.+.|.......+|...++.+++...-|+.-.. ..+-..+.+.+++..|++.+. +++.-+ +...+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 44566667777788888999999999988766665443 334567888889999998874 444422 335666
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCC------------chhHH
Q 036165 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT------------DAFVV 217 (566)
Q Consensus 150 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~------------~~~~~ 217 (566)
+.-.+++.|.++.|+..|+...+. .|+..+-..++-++...|+.++..+.|.+|+.....+ +....
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 777789999999999999998875 6777766666666677899999999999998754332 22222
Q ss_pred HHHH-----HHHHhcC--CHHHHHHHHHhc----CCCChhh-------------HH--------HHHHHHHHcCChhHHH
Q 036165 218 SSLI-----DMYSKCG--SVEKAKKVFDEM----VEKDIVA-------------MN--------AMVSGYVQRGLATEAL 265 (566)
Q Consensus 218 ~~l~-----~~~~~~g--~~~~A~~~~~~~----~~~~~~~-------------~~--------~li~~~~~~g~~~~a~ 265 (566)
+.-+ .-.-+.+ +.+++.-.--++ ..++-.. +. .-...+.++|+++.|+
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ai 439 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAI 439 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHH
Confidence 2221 1122211 223332222222 2232110 11 1123578899999999
Q ss_pred HHHHHhhhCCCCccHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036165 266 NLVEEIGTPRVKPNVVTWNTLISGFS--KSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLS 343 (566)
Q Consensus 266 ~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 343 (566)
++++-..+..-+.-...-+.|...+. -..++..|.+.-+...... .-+......-......+|++++|.+.|++.+.
T Consensus 440 eilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 440 EILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred HHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 99998876544433333333333322 2446777877777665431 11222222233344568999999999999976
Q ss_pred CCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHH
Q 036165 344 QGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWN 420 (566)
Q Consensus 344 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 420 (566)
..- .-...+..+.-.+-..|++++|.+.|-++...-. .+..+..-+.+.|....+...|++++..... .|+....
T Consensus 519 nda-sc~ealfniglt~e~~~~ldeald~f~klh~il~-nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ils 596 (840)
T KOG2003|consen 519 NDA-SCTEALFNIGLTAEALGNLDEALDCFLKLHAILL-NNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILS 596 (840)
T ss_pred Cch-HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHH
Confidence 531 1222333444566788999999998877654322 2677778889999999999999999987765 5677889
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHH-HHHHhc
Q 036165 421 SMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV-DLLGRA 499 (566)
Q Consensus 421 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~ 499 (566)
.|...|-+.|+-..|.+.+-.--+-.+-|..+..-|..-|....-+++++.+|++.. -+.|+..-|..++ .++.|.
T Consensus 597 kl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaa---liqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 597 KLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LIQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hcCccHHHHHHHHHHHHHhc
Confidence 999999999999999998877766688899999999999999999999999999986 5789999998877 566789
Q ss_pred CCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCC
Q 036165 500 GRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGN 533 (566)
Q Consensus 500 g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~ 533 (566)
|++.+|.++++... .+.|...+.-|.+.|...|-
T Consensus 674 gnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999999887 44678888888888887773
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-12 Score=128.16 Aligned_cols=222 Identities=12% Similarity=-0.006 Sum_probs=129.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhH-------HHHHHHH
Q 036165 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV-------RSALVDM 394 (566)
Q Consensus 322 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~ 394 (566)
...+...|+++.|...++.+.+.. +-+...+..+...+...|+++.+.+.+..+.+.+..+.... +..++..
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555544432 22333444444445555555555555555544433222111 1111111
Q ss_pred HHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHH--HHHHHHHhccCChHHH
Q 036165 395 YAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSF--TAVLTACCHVGLVELG 469 (566)
Q Consensus 395 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a 469 (566)
-......+...+.++...+ .+...+..+...+...|+.++|.+++++..+..+.+.... ....-.....++.+.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~ 318 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKL 318 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHH
Confidence 1112223444445554443 3666777777788888888888888888877644443211 1111222345677788
Q ss_pred HHHHHHhHHhcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHh--cC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036165 470 QRLFNMMQEKYKIMPRT--EHYACMVDLLGRAGRLAEAYEMIKT--MS-TEPDLFVWGALLGACKNHGNIELAEIAAKHL 544 (566)
Q Consensus 470 ~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 544 (566)
.+.++...+. .+-|+ ....++...+.+.|++++|.+.|++ .. ..|+...+..+...+.+.|+.++|.+++++.
T Consensus 319 ~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 319 EKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888877764 22233 5566788888888888888888883 33 4688888888888888888888888888887
Q ss_pred hh
Q 036165 545 SE 546 (566)
Q Consensus 545 ~~ 546 (566)
+.
T Consensus 397 l~ 398 (409)
T TIGR00540 397 LG 398 (409)
T ss_pred HH
Confidence 65
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.2e-11 Score=109.53 Aligned_cols=373 Identities=13% Similarity=0.057 Sum_probs=255.2
Q ss_pred CCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhh-HHHHHHHH
Q 036165 177 QNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVA-MNAMVSGY 255 (566)
Q Consensus 177 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~li~~~ 255 (566)
.|..-+-.....+-..|..+.|...+...+..- + ..|.+-+....-..+.+.+..+...+...+... ---+..++
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P---~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-P---WFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-C---cchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 344333333344456677777777777766431 2 233333333333344444444444443322211 11233455
Q ss_pred HHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC----ChhhHHHHHHHHHhcCCh
Q 036165 256 VQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP----DVVSWTSVISGLVHNFCN 331 (566)
Q Consensus 256 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~ 331 (566)
-.....+++++-.......|.+-+...-+....+.....|++.|+.+|+++.+. .| |..+|+.++ |+++.+-
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn--DPYRl~dmdlySN~L--Yv~~~~s 313 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN--DPYRLDDMDLYSNVL--YVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcchhHHHHhHHH--HHHhhhH
Confidence 555677888887888777777666555555555666778999999999998876 33 567777766 3333322
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036165 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411 (566)
Q Consensus 332 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 411 (566)
. +.++-+-...--+--+.|...+...|+-.++.++|..+|+..++.++. ....++.+..-|....+...|+.-++..
T Consensus 314 k--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 K--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred H--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 1 222222221111334456677777888888899999999999987655 5678888899999999999999999987
Q ss_pred CC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhH
Q 036165 412 SE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH 488 (566)
Q Consensus 412 ~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 488 (566)
.+ .|-..|-.|..+|.-.+.+.=|+-.|++.....|.|...|.+|..+|.+.++.++|++.|++...- | +.+...
T Consensus 391 vdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-~-dte~~~ 468 (559)
T KOG1155|consen 391 VDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-G-DTEGSA 468 (559)
T ss_pred HhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-c-ccchHH
Confidence 76 577789999999999999999999999999888889999999999999999999999999999875 3 335678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC------CCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHH
Q 036165 489 YACMVDLLGRAGRLAEAYEMIKTMST------EPDLFVW---GALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLT 559 (566)
Q Consensus 489 ~~~l~~~~~~~g~~~~A~~~~~~~~~------~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 559 (566)
+..|.+.|.+.++.++|...|++... ..+..+. .-|..-+.+.+++++|.........-+|.-.....++-
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlR 548 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLR 548 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 88999999999999999888877651 1233232 22445577889999998888877766665555555554
Q ss_pred HHH
Q 036165 560 DLY 562 (566)
Q Consensus 560 ~~~ 562 (566)
.+.
T Consensus 549 eir 551 (559)
T KOG1155|consen 549 EIR 551 (559)
T ss_pred HHH
Confidence 443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.1e-12 Score=124.18 Aligned_cols=288 Identities=12% Similarity=0.001 Sum_probs=214.1
Q ss_pred HHhcCCHHHHHHHHHhcCCC--C-hhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHH
Q 036165 224 YSKCGSVEKAKKVFDEMVEK--D-IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVS 300 (566)
Q Consensus 224 ~~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 300 (566)
....|+++.|++.+.+..+. + ...+-....+..+.|+++.|.+.+.+..+....+....-......+...|+++.|.
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 35679999999999888543 3 23344556778888999999999999876432222223334577888899999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HccCchHHHHHHHHHHH
Q 036165 301 KLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC---ASAANMRRGKEIHGCAI 377 (566)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~---~~~~~~~~a~~~~~~~~ 377 (566)
+.++.+.+.. +-+...+..+...+...|++++|.+.+..+.+.++.+.......-..+. ...+..+.+.+.+..+.
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999998874 3366788899999999999999999999999987543332212111221 22233333344555555
Q ss_pred HhCCC---CcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhH---HHHHHHHHHhcCChHHHHHHHHHhhhcCCCC
Q 036165 378 VMGVE---GDLHVRSALVDMYAKCGFISEARTLFDKMSE--RNTVT---WNSMIFGCANHGYCDEAIELFNQMEERKKLD 449 (566)
Q Consensus 378 ~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 449 (566)
+..+. .++..+..++..+...|+.++|.+++++..+ |+... ...........++.+.+.+.+++..+..+.|
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~ 332 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK 332 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC
Confidence 44332 3788889999999999999999999999886 44332 1222223344578889999999988876667
Q ss_pred H--HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 450 H--LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 450 ~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
+ ....++...+.+.|++++|.+.|+..... ...|+...+..+...+.+.|+.++|.+++++..
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7 77889999999999999999999964443 557999999999999999999999999999754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-12 Score=119.40 Aligned_cols=382 Identities=11% Similarity=0.022 Sum_probs=221.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHCCCCCC-cchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCc-hhHHHHHHHHH
Q 036165 147 WIALTGAYARRGYHQEAVTVFHEMHIQGLKQN-IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD-AFVVSSLIDMY 224 (566)
Q Consensus 147 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~ 224 (566)
+-...+-|.++|++++|++.|.+.++. .|| +.-|.....+|...|+|+++.+--.+.++. .|+ +..+..-.+++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 445677788999999999999999884 677 667778888889999999998888888775 344 34566666777
Q ss_pred HhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHH---------hhhCC--CCccHHHHHHHHHHHhcC
Q 036165 225 SKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEE---------IGTPR--VKPNVVTWNTLISGFSKS 293 (566)
Q Consensus 225 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~---------m~~~~--~~p~~~~~~~ll~~~~~~ 293 (566)
-..|++++|+.=.. -.++..++....-.--+.+++++ |.+.+ +-|......+....+-..
T Consensus 194 E~lg~~~eal~D~t---------v~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 194 EQLGKFDEALFDVT---------VLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HhhccHHHHHHhhh---------HHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 77888887764221 12222222222211222222221 11111 234443333333222110
Q ss_pred --------C--------------------CHHHHHHHHHHHHHc-CCCC--C---------hhhHHHHHHHHHhcCChhH
Q 036165 294 --------G--------------------DQVMVSKLFQLMRAK-GVEP--D---------VVSWTSVISGLVHNFCNDE 333 (566)
Q Consensus 294 --------~--------------------~~~~a~~~~~~~~~~-~~~~--~---------~~~~~~li~~~~~~g~~~~ 333 (566)
+ .+..+...+.+-... -..+ + ..+...-..-+.-.|+.-.
T Consensus 265 ~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~ 344 (606)
T KOG0547|consen 265 PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLG 344 (606)
T ss_pred ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchh
Confidence 0 122222222211100 0001 1 1111111122334566777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 036165 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413 (566)
Q Consensus 334 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 413 (566)
|..-|+..++....++. .|..+...|....+.++....|+.+.+.++. ++.+|..-..++.-.+++++|..-|++...
T Consensus 345 a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~ 422 (606)
T KOG0547|consen 345 AQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAIS 422 (606)
T ss_pred hhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777777665422222 2566666777777777777777777776544 556666666666666777777777777665
Q ss_pred ---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-----
Q 036165 414 ---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR----- 485 (566)
Q Consensus 414 ---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----- 485 (566)
.++..|-.+..+.-+.++++++...|++.++..|.-+..|+.....+...++++.|.+.|+..++. .|+
T Consensus 423 L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L---E~~~~~~~ 499 (606)
T KOG0547|consen 423 LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL---EPREHLII 499 (606)
T ss_pred cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh---cccccccc
Confidence 234445555555556667777777777777777777777777777777777777777777777643 333
Q ss_pred ----hhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Q 036165 486 ----TEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAEIAAKHLSEL 547 (566)
Q Consensus 486 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (566)
+.+--.++-.-.+ +++..|..+++++. ..| ....+..|...-.+.|+.++|+++|++...+
T Consensus 500 v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 500 VNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred ccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 1111122222222 67777777777766 222 3445666777777777777777777776654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.5e-12 Score=115.36 Aligned_cols=344 Identities=12% Similarity=0.044 Sum_probs=251.3
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHH--HHHH
Q 036165 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW--NTLI 287 (566)
Q Consensus 210 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--~~ll 287 (566)
...|...+-.....+-+.|..+.|...|......-+..|.+.+...--..+.+.+..+.. |.+.|..-+ -.+.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~-----~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVV-----GLPSDMHWMKKFFLK 234 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHh-----cCcccchHHHHHHHH
Confidence 345555555555667788999999999999876555555554443333333333332221 112111111 1244
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCc
Q 036165 288 SGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGF--CPTSATISSILPACASAAN 365 (566)
Q Consensus 288 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~ 365 (566)
.++-...+.+++..-.+.....|++.+...-+....+.-.+.++|+|+.+|+++.++.. --|..+|+.++-.-.....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 56666678888888888888888877766666666777889999999999999988731 1245667766654333222
Q ss_pred hHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHh
Q 036165 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQM 442 (566)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 442 (566)
+. ++.+-.-.--+--+.+...+.+-|.-.++.++|...|++..+ .....|+.|..-|....+...|.+.|+..
T Consensus 315 Ls----~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 315 LS----YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HH----HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 21 111111111122456777888999999999999999999886 34568999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCCHHH
Q 036165 443 EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST--EPDLFV 520 (566)
Q Consensus 443 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~ 520 (566)
.+..|.|...|-.|.++|.-.+...-|+-.|+++... -+-|+..|.+|+++|.+.++.++|.+-|.++.. ..+...
T Consensus 391 vdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 391 VDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred HhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 9999999999999999999999999999999999863 344789999999999999999999999999873 345588
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh-------hCCCCchHHHHHHHHHhh
Q 036165 521 WGALLGACKNHGNIELAEIAAKHLSE-------LEPESAANNMLLTDLYAN 564 (566)
Q Consensus 521 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~~~~~l~~~~~~ 564 (566)
+..|...|-+.++.++|.+.+++-++ ..|+-..+...|+..+.+
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k 519 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKK 519 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 99999999999999999999999987 345445555556655544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-13 Score=130.78 Aligned_cols=283 Identities=13% Similarity=0.070 Sum_probs=150.5
Q ss_pred ChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCChhHHHHH
Q 036165 260 LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG--VEPDVVSWTSVISGLVHNFCNDEAFDT 337 (566)
Q Consensus 260 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 337 (566)
+..+|+..|..+.+. +.-+......+..+|...+++++|+++|+.+.+.. ..-+...|.+.+--+ .+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL---q~-~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL---QD-EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH---Hh-hHHHHH
Confidence 456666666663332 23333455556666666666666666666665541 111444555444221 11 112222
Q ss_pred H-HHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh
Q 036165 338 F-KEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNT 416 (566)
Q Consensus 338 ~-~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 416 (566)
+ +.+.+. -+..+.+|..+...|.-+++.+.|++.|+.+++.+.. ....|+.+..-+.....+|.|...|+.....+.
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 2 222222 2444556666666666666666666666666554322 445555555555556666666666666655444
Q ss_pred hHHH---HHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 036165 417 VTWN---SMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV 493 (566)
Q Consensus 417 ~~~~---~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 493 (566)
..|+ -+...|.++++.+.|+-.|+++.+-.|.+.+....+...+-+.|+.|+|+++++++... -+-|+..--.-+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~~~~ 564 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPKNPLCKYHRA 564 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCCCchhHHHHH
Confidence 3333 34455666666666666666666555555555566666666666666666666666532 112233333344
Q ss_pred HHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC
Q 036165 494 DLLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAEIAAKHLSELEPES 551 (566)
Q Consensus 494 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 551 (566)
..+...+++++|+..++++. .-| +..++..+...|.+.|+.+.|..-|--|.+++|.-
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 44555566666666666655 223 34444555566666666666666666666666543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-12 Score=124.98 Aligned_cols=190 Identities=15% Similarity=0.097 Sum_probs=92.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHH---
Q 036165 314 DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCP-TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS--- 389 (566)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--- 389 (566)
.+.+|.++..+|.-+++.+.|++.|++.++. .| ...+|+.+..-+.....+|.|...|+.++.. ++..|+
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----~~rhYnAwY 493 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV----DPRHYNAWY 493 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC----CchhhHHHH
Confidence 3445555555555555555555555555432 22 3444555555555555555555555554432 222232
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCh
Q 036165 390 ALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLV 466 (566)
Q Consensus 390 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 466 (566)
-+...|.|.++++.|+-.|++..+ .+.+....+...+.+.|+.++|+.+++++....+.|+..-...+..+...+++
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRY 573 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcch
Confidence 234445555555555555555443 23334444444455555555555555555544444444444444445555555
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 036165 467 ELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511 (566)
Q Consensus 467 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 511 (566)
++|...++++++. ++-+..++..++..|.+.|+.+.|+.-|--
T Consensus 574 ~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~ 616 (638)
T KOG1126|consen 574 VEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSW 616 (638)
T ss_pred HHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHH
Confidence 5555555555532 222334444555555555555555444443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-10 Score=104.30 Aligned_cols=281 Identities=13% Similarity=0.020 Sum_probs=167.9
Q ss_pred cCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 036165 258 RGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDT 337 (566)
Q Consensus 258 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 337 (566)
.|+|.+|++++.+-.+.+-.| ...|..-..+.-..|+.+.+-.++.++-+..-.++....-+..+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 355555555555544433222 2233334444445555555555555554443333444444444555555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcH-------hHHHHHHHHHHhcCCHHHHHHHHHh
Q 036165 338 FKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL-------HVRSALVDMYAKCGFISEARTLFDK 410 (566)
Q Consensus 338 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~ 410 (566)
+.++.+.+ +-..........+|.+.|++.....++..+.+.+.-.+. .+++.+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 55555443 233344455555555555555555555555555544332 2344444444444445555556666
Q ss_pred cCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhc-CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh
Q 036165 411 MSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT 486 (566)
Q Consensus 411 ~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 486 (566)
... .++..-.+++.-+.+.|+.++|.++.++..+. ..|+ ....-.+.+.++.+.-++..+.-....+. ++
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~--~p 328 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE--DP 328 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC--Ch
Confidence 553 34556666677777788888888887777776 4444 22222456677777777777777665333 44
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036165 487 EHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLFVWGALLGACKNHGNIELAEIAAKHLSE 546 (566)
Q Consensus 487 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (566)
..+.+|...|.+.+.|.+|.+.|+... ..|+..+|+.+..++.+.|+.++|.+..++.+-
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 667788888888888888888888766 568888888888888888888888888888774
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.6e-11 Score=107.22 Aligned_cols=282 Identities=11% Similarity=0.080 Sum_probs=203.3
Q ss_pred cCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 036165 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKV 236 (566)
Q Consensus 157 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 236 (566)
.|+|.+|.++..+-.+.+-.| ...|.....+.-..|+.+.+-+++.++.+..-.++..+.-.........||++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 689999999998877765443 3445666677778899999999999988874466677777888888999999999888
Q ss_pred HHhcC---CCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccH-------HHHHHHHHHHhcCCCHHHHHHHHHHH
Q 036165 237 FDEMV---EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNV-------VTWNTLISGFSKSGDQVMVSKLFQLM 306 (566)
Q Consensus 237 ~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~ 306 (566)
++++. ..++........+|.+.|++.+...++..|.+.|+--++ .+|..++.-....+..+.-...++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 88773 457778888999999999999999999999988865544 45666776666666666666666665
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHh
Q 036165 307 RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLH 386 (566)
Q Consensus 307 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 386 (566)
... ...++..-..++.-+...|+.++|.++.++..+++..|+ -...-.+.+.++.+.-.+..++-.+..+. ++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE-DPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC-Chh
Confidence 433 344566666777778888888888888888887766655 22223345556666666665555544322 446
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 036165 387 VRSALVDMYAKCGFISEARTLFDKMSE--RNTVTWNSMIFGCANHGYCDEAIELFNQMEER 445 (566)
Q Consensus 387 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 445 (566)
.+.+|...|.+.+.|.+|...|+...+ |+..+|+.+..++.+.|+..+|.+.+++....
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 677777777777777777777776554 67777777777777777777777777766544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.4e-11 Score=103.30 Aligned_cols=284 Identities=12% Similarity=0.112 Sum_probs=202.6
Q ss_pred cCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC-C--hhhHHHHHHHHHhcCChhHH
Q 036165 258 RGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP-D--VVSWTSVISGLVHNFCNDEA 334 (566)
Q Consensus 258 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~--~~~~~~li~~~~~~g~~~~A 334 (566)
+++.++|.++|-+|.+.. +-+..+--+|.+.|-+.|..+.|..++..+.++.--+ + ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467788888888887632 3344555667788888888888888888877642111 1 22344566778888889999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCc----HhHHHHHHHHHHhcCCHHHHHHHHHh
Q 036165 335 FDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGD----LHVRSALVDMYAKCGFISEARTLFDK 410 (566)
Q Consensus 335 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 410 (566)
+.+|..+.+.+ ..-......++..|-...++++|.++-.++.+.+..+. ...|.-+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99998887754 34455677888888888999999988888888765543 34566777777778899999999988
Q ss_pred cCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcC-CCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh
Q 036165 411 MSER---NTVTWNSMIFGCANHGYCDEAIELFNQMEERK-KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT 486 (566)
Q Consensus 411 ~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 486 (566)
..+. .+..--.+...+...|+++.|.+.++.+.+.. .--+.+...|..+|.+.|+.++....+.++.+. .+..
T Consensus 206 Alqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~ 282 (389)
T COG2956 206 ALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGA 282 (389)
T ss_pred HHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCc
Confidence 8752 33344456678888999999999999988862 233456788888999999999999999988865 3444
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHH-HhcCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHhh
Q 036165 487 EHYACMVDLLGRAGRLAEAYEMI-KTMSTEPDLFVWGALLGACK---NHGNIELAEIAAKHLSE 546 (566)
Q Consensus 487 ~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~ 546 (566)
..-..+.+.-....-.+.|...+ +....+|+...+..++..-. ..|...+..-+++.|..
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 44455555544444555555544 55557899999988887654 33446666667777663
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.6e-11 Score=109.57 Aligned_cols=217 Identities=12% Similarity=0.085 Sum_probs=172.2
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHH
Q 036165 290 FSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRG 369 (566)
Q Consensus 290 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 369 (566)
+.-.|+.-.+..-|+..++....++ ..|--+...|....+.++....|....+-+ +-++.+|..-.+...-.++++.|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 4456889999999999988743332 227677778999999999999999998765 55677888888888889999999
Q ss_pred HHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 036165 370 KEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--R-NTVTWNSMIFGCANHGYCDEAIELFNQMEERK 446 (566)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 446 (566)
..=|++.+...+. +...|.-+.-+..+.+++++++..|++..+ | -+..|+.....+..+++++.|.+.|+..++..
T Consensus 414 ~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 414 IADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 9999999887654 566677777777889999999999999886 4 35688888999999999999999999998863
Q ss_pred CC------CHHHH--HHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 447 KL------DHLSF--TAVLTACCHVGLVELGQRLFNMMQEKYKIMPR-TEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 447 ~~------~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
+. +..++ -.++-. .=.+++..|.+++.++.+. .|. ...|..|...-.+.|+.++|.++|++..
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~---Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIEL---DPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHcc---CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33 22222 122221 1248999999999999854 443 4578899999999999999999999865
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.6e-11 Score=102.95 Aligned_cols=289 Identities=14% Similarity=0.106 Sum_probs=159.5
Q ss_pred cCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCC-c--hhHHHHHHHHHHhcCCHHHH
Q 036165 157 RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT-D--AFVVSSLIDMYSKCGSVEKA 233 (566)
Q Consensus 157 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~--~~~~~~l~~~~~~~g~~~~A 233 (566)
++++++|.++|-+|.+.. +-+..+..++.+.+.+.|..|.|.++++-+.++.--+ + ....-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 567888888888887742 2244455567777778888888888888877642111 1 12334456667777777777
Q ss_pred HHHHHhcCCCC---hhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036165 234 KKVFDEMVEKD---IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG 310 (566)
Q Consensus 234 ~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 310 (566)
+.+|..+.+.+ ......|+..|-+..+|++|++.-+++.+.+-.+...- |
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e----I----------------------- 179 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE----I----------------------- 179 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH----H-----------------------
Confidence 77777776532 23455566666667777777666666655433322110 0
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHH
Q 036165 311 VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSA 390 (566)
Q Consensus 311 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 390 (566)
...|..+...+....+.+.|..++++..+.+ +.....-..+.......|+++.|.+.++.+.+.++.--+.+...
T Consensus 180 ----AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 180 ----AQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred ----HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 1123333333444445555555555554432 11222222333445555555555555555555555545566666
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc---cCC
Q 036165 391 LVDMYAKCGFISEARTLFDKMSE--RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCH---VGL 465 (566)
Q Consensus 391 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~ 465 (566)
|..+|.+.|+.++....+.++.+ ++...-..+...-......+.|...+.+-.. .+|+...+..++..... .|.
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~-r~Pt~~gf~rl~~~~l~daeeg~ 333 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLR-RKPTMRGFHRLMDYHLADAEEGR 333 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHh-hCCcHHHHHHHHHhhhccccccc
Confidence 77777777777777777766654 4444444444433344444445444433322 36666666666664432 233
Q ss_pred hHHHHHHHHHhHHh
Q 036165 466 VELGQRLFNMMQEK 479 (566)
Q Consensus 466 ~~~a~~~~~~~~~~ 479 (566)
..+-...+..|...
T Consensus 334 ~k~sL~~lr~mvge 347 (389)
T COG2956 334 AKESLDLLRDMVGE 347 (389)
T ss_pred hhhhHHHHHHHHHH
Confidence 44455555555543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-10 Score=109.89 Aligned_cols=414 Identities=14% Similarity=0.020 Sum_probs=293.9
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 036165 144 IHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDM 223 (566)
Q Consensus 144 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~ 223 (566)
..-+-.+.+-+..+.++..|+-+-++....+..|+ ..--+.+++.-.|+.+.|..++..-.- ...|.........+
T Consensus 16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~--d~~~~aq~l~~~~~y~ra~~lit~~~l--e~~d~~cryL~~~~ 91 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPA--DIYWLAQVLYLGRQYERAAHLITTYKL--EKRDIACRYLAAKC 91 (611)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChH--HHHHHHHHHHhhhHHHHHHHHHHHhhh--hhhhHHHHHHHHHH
Confidence 34466677777788888888888888876654444 444566777777888888777665422 23567777778888
Q ss_pred HHhcCCHHHHHHHHHhcC---------CCC--------hhh----HHHHH-------HHHHHcCChhHHHHHHHHhhhCC
Q 036165 224 YSKCGSVEKAKKVFDEMV---------EKD--------IVA----MNAMV-------SGYVQRGLATEALNLVEEIGTPR 275 (566)
Q Consensus 224 ~~~~g~~~~A~~~~~~~~---------~~~--------~~~----~~~li-------~~~~~~g~~~~a~~~~~~m~~~~ 275 (566)
+.+..++++|..++.... +++ ..- -+.-. ..|....+.++|...|.+.....
T Consensus 92 l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D 171 (611)
T KOG1173|consen 92 LVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLAD 171 (611)
T ss_pred HHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcc
Confidence 899999999999998320 011 100 11111 23444556777888887766543
Q ss_pred CCccHHHHHHHHHHHhcCC------------------CHHHHHHHHHHHHH----------------cCCCCChhhHHHH
Q 036165 276 VKPNVVTWNTLISGFSKSG------------------DQVMVSKLFQLMRA----------------KGVEPDVVSWTSV 321 (566)
Q Consensus 276 ~~p~~~~~~~ll~~~~~~~------------------~~~~a~~~~~~~~~----------------~~~~~~~~~~~~l 321 (566)
+.- ...+..++.+..-.. +.+....+++.... .+..-++......
T Consensus 172 ~~c-~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ 250 (611)
T KOG1173|consen 172 AKC-FEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEK 250 (611)
T ss_pred hhh-HHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHH
Confidence 221 122222222211111 11112222221100 0112244455555
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCH
Q 036165 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFI 401 (566)
Q Consensus 322 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 401 (566)
..-+...+++.+..++.+...+.. ++....+..-|.++...|+..+...+-..+++.-+. .+.+|-++.--|...|+.
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YYl~i~k~ 328 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCYYLMIGKY 328 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHHHHHhcCc
Confidence 666777899999999999998764 556666666666888888887777777777776433 677888899999999999
Q ss_pred HHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 036165 402 SEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478 (566)
Q Consensus 402 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 478 (566)
.+|++.|.+... .-...|-.....|+-.|..++|...|...-+..+.....+.-+.--|...++++.|.+.|.++..
T Consensus 329 seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a 408 (611)
T KOG1173|consen 329 SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA 408 (611)
T ss_pred HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 999999997764 23468999999999999999999999999888766666677777778899999999999999985
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Q 036165 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST--------EP-DLFVWGALLGACKNHGNIELAEIAAKHLSELEP 549 (566)
Q Consensus 479 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 549 (566)
. .+.|+...+-+.-.....+.+.+|..+|+.... ++ =..+++.|.-+|++.+.+++|+..+++++.+.|
T Consensus 409 i--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~ 486 (611)
T KOG1173|consen 409 I--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP 486 (611)
T ss_pred c--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 3 455677888888888888999999999988761 11 234678888999999999999999999999999
Q ss_pred CCchHHHHHHHHHhhcC
Q 036165 550 ESAANNMLLTDLYANAG 566 (566)
Q Consensus 550 ~~~~~~~~l~~~~~~~g 566 (566)
.++.+|..+|-+|...|
T Consensus 487 k~~~~~asig~iy~llg 503 (611)
T KOG1173|consen 487 KDASTHASIGYIYHLLG 503 (611)
T ss_pred CchhHHHHHHHHHHHhc
Confidence 99999999999998776
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.3e-10 Score=112.25 Aligned_cols=441 Identities=12% Similarity=0.046 Sum_probs=223.5
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHH
Q 036165 73 SFHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152 (566)
Q Consensus 73 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 152 (566)
+..|+..+|..++..|+..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. +|...+|+.|..
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~ 91 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLLK 91 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHHH
Confidence 34566677888888888888888887 8888877777777788888888888888776655 677788888888
Q ss_pred HHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHH-cCCCCchhHHHHHHHHHHhcCCHH
Q 036165 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK-HSFGTDAFVVSSLIDMYSKCGSVE 231 (566)
Q Consensus 153 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~l~~~~~~~g~~~ 231 (566)
+|.+.||... ++..++ ....+...+...|.......++..+.- .+.-||.. .++....-.|-++
T Consensus 92 ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwa 156 (1088)
T KOG4318|consen 92 AYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWA 156 (1088)
T ss_pred HHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHH
Confidence 8888888655 222222 111222223333333333333322111 11112221 1223333344555
Q ss_pred HHHHHHHhcCCCChh-hHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036165 232 KAKKVFDEMVEKDIV-AMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG 310 (566)
Q Consensus 232 ~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 310 (566)
.+.+++..++.-... +....++-... .+.-..++++......-.|++.+|..++.+-...|+.+.|..++.+|.+.|
T Consensus 157 qllkll~~~Pvsa~~~p~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHHHHHhhCCcccccchHHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 555555444221000 00001111111 111112222221111113555555555555555566666666666666655
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHH----------------------
Q 036165 311 VEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRR---------------------- 368 (566)
Q Consensus 311 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~---------------------- 368 (566)
++.+.+-|..|+-+ .++...+..+++-|.+.|+.|+..|+...+..+.++|....
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg 311 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRG 311 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcc
Confidence 55555555554433 55555555555555555666665555554444444222111
Q ss_pred --HHHHH------------HHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------CChhHHHHHHHHHH
Q 036165 369 --GKEIH------------GCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE-------RNTVTWNSMIFGCA 427 (566)
Q Consensus 369 --a~~~~------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~l~~~~~ 427 (566)
+.+.+ ....-.|+.....+|... .-...+|+-++.+.+...+.. .++..|..++.-|.
T Consensus 312 ~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c-~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyF 390 (1088)
T KOG4318|consen 312 LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMC-EKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYF 390 (1088)
T ss_pred cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHH-HHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHH
Confidence 11111 111112333333333322 223336777777777666553 23334444433332
Q ss_pred hcC----------------------ChHHHHHHHHHhhhc-----------------CCC-------CHHHHHHHHHHHh
Q 036165 428 NHG----------------------YCDEAIELFNQMEER-----------------KKL-------DHLSFTAVLTACC 461 (566)
Q Consensus 428 ~~~----------------------~~~~A~~~~~~~~~~-----------------~~~-------~~~~~~~l~~~~~ 461 (566)
+.- ...+..+........ ..| -...-+.++.+|+
T Consensus 391 rr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~ 470 (1088)
T KOG4318|consen 391 RRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLN 470 (1088)
T ss_pred HHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHH
Confidence 211 111111111111100 000 0011234444555
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHhcCCHHH
Q 036165 462 HVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE-----PDLFVWGALLGACKNHGNIEL 536 (566)
Q Consensus 462 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----p~~~~~~~l~~~~~~~g~~~~ 536 (566)
..-+..+++..-+..... -+. ..|..|++.+....+.++|..+.++...+ -|..-+..+.+...+.+....
T Consensus 471 se~n~lK~l~~~ekye~~-lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~d 546 (1088)
T KOG4318|consen 471 SEYNKLKILCDEEKYEDL-LFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYD 546 (1088)
T ss_pred HHHHHHHHHHHHHHHHHH-Hhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHH
Confidence 544445555444433332 221 56888889899999999999998887622 344556777788888888888
Q ss_pred HHHHHHHHhh
Q 036165 537 AEIAAKHLSE 546 (566)
Q Consensus 537 A~~~~~~~~~ 546 (566)
+..+++.+.+
T Consensus 547 l~tiL~e~ks 556 (1088)
T KOG4318|consen 547 LSTILYEDKS 556 (1088)
T ss_pred HHHHHhhhhH
Confidence 8888888776
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-09 Score=97.10 Aligned_cols=442 Identities=12% Similarity=0.070 Sum_probs=273.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC---CCcchHHHHHHHHHhcCChH
Q 036165 85 IEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK---TNIHRWIALTGAYARRGYHQ 161 (566)
Q Consensus 85 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 161 (566)
+.-+...+++..|..+++.....+-+-...+..-+..-+-+.|++++|...+..+.+ ++...|-.|.-++.--|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 566667889999999988877554322222333344556688999999999886654 45566777777777778888
Q ss_pred HHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 162 EAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV 241 (566)
Q Consensus 162 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 241 (566)
+|..+-.+..+ +......++...-+.++-++-..+++.+.. +..---+|.......-.+.+|.+++.++.
T Consensus 109 eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 109 EAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887666422 233333444555566776666666665533 22333445566555667889999999886
Q ss_pred CCC--hhhHHH-HHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhH
Q 036165 242 EKD--IVAMNA-MVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSW 318 (566)
Q Consensus 242 ~~~--~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 318 (566)
..+ -...|. +.-+|.+..-++-+.++++-.... ++.+....|.......+.=+-..|.+-...+.+.+-.. |
T Consensus 179 ~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~ 253 (557)
T KOG3785|consen 179 QDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y 253 (557)
T ss_pred hcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c
Confidence 543 334443 334667777788888877776543 22233344433333333222222332233332221110 1
Q ss_pred HHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHH--
Q 036165 319 TSVISGLVHN-----FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL-- 391 (566)
Q Consensus 319 ~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-- 391 (566)
-.+.-.++. ..-+.|++++-.+.+. -|. .-..++-.|.+.+++++|..+.+.+.- ..|...+...+
T Consensus 254 -~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~ 326 (557)
T KOG3785|consen 254 -PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVF 326 (557)
T ss_pred -hhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHH
Confidence 112222222 3446777777666543 232 233455667888888888877655321 11222222222
Q ss_pred ---HHHHHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhcc
Q 036165 392 ---VDMYAKCGFISEARTLFDKMSE-----RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHV 463 (566)
Q Consensus 392 ---~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 463 (566)
..-........-|...|+-.-+ .++..-.++...+.-..++++.+..+..+..-...|...-..+..+.+..
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~at 406 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLAT 406 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHh
Confidence 2222223346667777765543 33444556667777777899999999888877555555555678899999
Q ss_pred CChHHHHHHHHHhHHhcCCCCChhHH-HHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHH-HHHHhcCCHHHHHHHH
Q 036165 464 GLVELGQRLFNMMQEKYKIMPRTEHY-ACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL-GACKNHGNIELAEIAA 541 (566)
Q Consensus 464 g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~ 541 (566)
|.+.+|+++|-++... .++ |..+| ..|.++|.++|+++-|++++-++....+..+...+| +-|.+.+++--|.+.|
T Consensus 407 gny~eaEelf~~is~~-~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAF 484 (557)
T KOG3785|consen 407 GNYVEAEELFIRISGP-EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAF 484 (557)
T ss_pred cChHHHHHHHhhhcCh-hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999887643 333 44445 467799999999999999999887555555555554 6799999999999999
Q ss_pred HHHhhhCCC
Q 036165 542 KHLSELEPE 550 (566)
Q Consensus 542 ~~~~~~~p~ 550 (566)
+.+..++|.
T Consensus 485 d~lE~lDP~ 493 (557)
T KOG3785|consen 485 DELEILDPT 493 (557)
T ss_pred hHHHccCCC
Confidence 988877763
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.6e-09 Score=98.50 Aligned_cols=446 Identities=11% Similarity=0.074 Sum_probs=243.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCCcc-hH-HHHHHHHHhc
Q 036165 80 AYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIH-RW-IALTGAYARR 157 (566)
Q Consensus 80 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~li~~~~~~ 157 (566)
..-+-++.+...+++++|.+....++..+ +.+...+..=+-...+.+++++|.++.+.-...... ++ ..-..++.+.
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 34445677788899999999999998887 455666667777788889999999777654432111 11 2234445578
Q ss_pred CChHHHHHHHHHhHHCCCCCCc-chHHHHHHHHcccCChhHHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHH
Q 036165 158 GYHQEAVTVFHEMHIQGLKQNI-FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT-DAFVVSSLIDMYSKCGSVEKAKK 235 (566)
Q Consensus 158 g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~ 235 (566)
+..++|+..++- ..++. .+...=...+.+.|++++|..+|+.+.+.+.+. +...-..++.+-.. -.+.
T Consensus 93 nk~Dealk~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~- 162 (652)
T KOG2376|consen 93 NKLDEALKTLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ- 162 (652)
T ss_pred ccHHHHHHHHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH-
Confidence 899999998873 33333 355555666788899999999999998876332 22222222222111 1111
Q ss_pred HHHhcCCCChhhHHH---HHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 036165 236 VFDEMVEKDIVAMNA---MVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE 312 (566)
Q Consensus 236 ~~~~~~~~~~~~~~~---li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 312 (566)
+.+........+|.. ..-.++..|++.+|+++++....-+.. .+. .++.. -.++-.++
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e-----------~l~-~~d~~-eEeie~el------ 223 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICRE-----------KLE-DEDTN-EEEIEEEL------ 223 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-----------hhc-ccccc-hhhHHHHH------
Confidence 233343332333333 334566788899998888876321100 000 00000 00000000
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHccCchHH--------------HHHHHHH
Q 036165 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSI---LPACASAANMRR--------------GKEIHGC 375 (566)
Q Consensus 313 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l---l~~~~~~~~~~~--------------a~~~~~~ 375 (566)
+ ..-..|..++...|+.++|..+|...++.. ++|....... +.++....++-. +......
T Consensus 224 -~-~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~ 300 (652)
T KOG2376|consen 224 -N-PIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSK 300 (652)
T ss_pred -H-HHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHH
Confidence 0 011122233444455555555555554443 2222111111 111111111110 1111111
Q ss_pred HHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-hhHHHHHHHHHH--hcCChHHHHHHHHHhhhcCCCC-HH
Q 036165 376 AIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN-TVTWNSMIFGCA--NHGYCDEAIELFNQMEERKKLD-HL 451 (566)
Q Consensus 376 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~-~~ 451 (566)
+.... .-....-+.++.+|. +.-+.+.++-....... ...+.+++..+. +......+.+++...-+..+.+ ..
T Consensus 301 Ls~~q-k~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~ 377 (652)
T KOG2376|consen 301 LSKKQ-KQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKV 377 (652)
T ss_pred HHHHH-HHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHH
Confidence 11110 101222234444443 45566666666655421 233444443332 2234677777777776654444 34
Q ss_pred HHHHHHHHHhccCChHHHHHHHH--------HhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCCCH
Q 036165 452 SFTAVLTACCHVGLVELGQRLFN--------MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-----TEPDL 518 (566)
Q Consensus 452 ~~~~l~~~~~~~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~ 518 (566)
.....+......|+++.|.+++. .+.+. +..| .+...++..|.+.++-+.|..++.+.. ..+..
T Consensus 378 v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s 454 (652)
T KOG2376|consen 378 VLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA-KHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS 454 (652)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-ccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc
Confidence 56666677788999999999988 44433 4334 445667777888877666666665544 11222
Q ss_pred HHH----HHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhh
Q 036165 519 FVW----GALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 519 ~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 564 (566)
... .-+...-.++|+-++|..+++++++.+|++..+...+...|+.
T Consensus 455 ~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 455 IALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYAR 504 (652)
T ss_pred hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHh
Confidence 233 3333344578999999999999999999999999988888865
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-08 Score=97.85 Aligned_cols=426 Identities=15% Similarity=0.155 Sum_probs=235.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHh-CCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHHHHHhcCC
Q 036165 81 YSERIEIYIRDRALQSGKILHAQLIVS-GLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGY 159 (566)
Q Consensus 81 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 159 (566)
+..-++...+++++...+..|+..++. .++....+|...+.+....|-++-+.+++++..+-++..-+-.|..+++.++
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~ 184 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDR 184 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccc
Confidence 344445555677777777777777666 3444556677777777777777777777777776666667777777777888
Q ss_pred hHHHHHHHHHhHHCC------CCCCcchHHHHHHHHcccCCh---hHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcC
Q 036165 160 HQEAVTVFHEMHIQG------LKQNIFVIPSVLKACGHLSDI---GTGEKIHSLVLKHSFGTD--AFVVSSLIDMYSKCG 228 (566)
Q Consensus 160 ~~~A~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~--~~~~~~l~~~~~~~g 228 (566)
+++|.+.+....... .+.+...|.-+-...++..+. -...++++.++.. -+| ...|.+|.+.|.+.|
T Consensus 185 ~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 185 LDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred hHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhh
Confidence 888777777765431 122333344433333332221 1223333333322 133 346788888888888
Q ss_pred CHHHHHHHHHhcCCC--ChhhHHHHHHHHHH----------------cC------ChhHHHHHHHHhhhCCC--------
Q 036165 229 SVEKAKKVFDEMVEK--DIVAMNAMVSGYVQ----------------RG------LATEALNLVEEIGTPRV-------- 276 (566)
Q Consensus 229 ~~~~A~~~~~~~~~~--~~~~~~~li~~~~~----------------~g------~~~~a~~~~~~m~~~~~-------- 276 (566)
++++|..+|++.... .+.-+..+-++|++ .| +++-.+.-|+.+.+.+.
T Consensus 263 ~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlL 342 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLL 342 (835)
T ss_pred hhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 888888888887443 22222222222221 11 11222333333332210
Q ss_pred ---CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 036165 277 ---KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP------DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC 347 (566)
Q Consensus 277 ---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 347 (566)
+-+..+|..-+. ...|+..+....+.+..+. +.| -...|..+.+.|-.+|+.+.|..+|++..+-..+
T Consensus 343 RQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred hcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 112222222222 2235555666666666543 222 2346777788888888888888888887654322
Q ss_pred CC---HHHHHHHHHHHHccCchHHHHHHHHHHHHhCC-----------CC------cHhHHHHHHHHHHhcCCHHHHHHH
Q 036165 348 PT---SATISSILPACASAANMRRGKEIHGCAIVMGV-----------EG------DLHVRSALVDMYAKCGFISEARTL 407 (566)
Q Consensus 348 ~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~------~~~~~~~l~~~~~~~g~~~~A~~~ 407 (566)
-- ..+|......-.+..+++.|..+++.+....- ++ +..++..+++.-...|-++....+
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v 499 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV 499 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence 11 22333334444456667777776665542111 11 234555566666677778888888
Q ss_pred HHhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHhhhc-CCCCHH-HHHHHHHHHhc---cCChHHHHHHHHHhHHh
Q 036165 408 FDKMSER---NTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDHL-SFTAVLTACCH---VGLVELGQRLFNMMQEK 479 (566)
Q Consensus 408 ~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~-~~~~l~~~~~~---~g~~~~a~~~~~~~~~~ 479 (566)
++++.+- ++...-.....+-.+.-++++.++|++-+.. ..|+.. .|+..+.-+.+ ...++.|..+|+++.+
T Consensus 500 YdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~- 578 (835)
T KOG2047|consen 500 YDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD- 578 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-
Confidence 8877752 2111111122233455577788888877777 334432 56655554432 3357788888888876
Q ss_pred cCCCCChh--HHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 480 YKIMPRTE--HYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 480 ~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
|.+|... .|-.....=.+.|....|+++++++.
T Consensus 579 -~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 579 -GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred -cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5665532 22222223334577777777777765
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-09 Score=106.23 Aligned_cols=435 Identities=15% Similarity=0.073 Sum_probs=263.0
Q ss_pred CCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcch-HH
Q 036165 108 GLARLTQIATKLITFYTECQNIHHARMLFDEIPK---TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFV-IP 183 (566)
Q Consensus 108 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~ 183 (566)
.+..++.+|..+.-+..++|+++.+-+.|++... .....|+.+...+...|.-..|+.+++.-......|+..+ +-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4567888999999999999999999999987765 3456788888899999998999999888766543344443 33
Q ss_pred HHHHHHc-ccCChhHHHHHHHHHHHcC--C--CCchhHHHHHHHHHHhc-----------CCHHHHHHHHHhcCCC---C
Q 036165 184 SVLKACG-HLSDIGTGEKIHSLVLKHS--F--GTDAFVVSSLIDMYSKC-----------GSVEKAKKVFDEMVEK---D 244 (566)
Q Consensus 184 ~ll~~~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~---~ 244 (566)
..-..|. +.+..+++..+..++++.. . ......+-.+.-+|... ....++++.+++..+. |
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3333343 4466777777777766621 1 11222333333333321 1234555666665332 3
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 036165 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISG 324 (566)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 324 (566)
+.+.-.+.--|+..++.+.|++..++..+.+-.-+...|..+.-.+...+++.+|+.+.+...+. ...|......-+..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHVLMDGKIHI 556 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhhhchhhhhh
Confidence 33333344456666777777777777766654556666766666666777777777777665443 01111111122222
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC---CH
Q 036165 325 LVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG---FI 401 (566)
Q Consensus 325 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~ 401 (566)
-..-++.++++.+..+++.- .-+...+...+. .|....-..-+..... .....+.++..+.......+ ..
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~--we~~~~~q~~~~----~g~~~~lk~~l~la~~-q~~~a~s~sr~ls~l~a~~~~~~~s 629 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLAL--WEAEYGVQQTLD----EGKLLRLKAGLHLALS-QPTDAISTSRYLSSLVASQLKSAGS 629 (799)
T ss_pred hhhcccHHHHHHHHHHHHHH--HHhhhhHhhhhh----hhhhhhhhcccccCcc-cccccchhhHHHHHHHHhhhhhccc
Confidence 33356666666666555431 000000000000 1100000000000000 11112233333322222111 11
Q ss_pred HHHHHHHHhcCCCC------hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 036165 402 SEARTLFDKMSERN------TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNM 475 (566)
Q Consensus 402 ~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 475 (566)
+.....+.....|+ ...|......+...++.++|...+.+.....+.....|......+...|..++|.+.|..
T Consensus 630 e~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 630 ELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred ccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 11111111111233 224556667788889999999888888887777888888888889999999999999998
Q ss_pred hHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHH--HHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC
Q 036165 476 MQEKYKIMPR-TEHYACMVDLLGRAGRLAEAYE--MIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550 (566)
Q Consensus 476 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 550 (566)
... +.|+ +....++..++.+.|+..-|.. ++..+. ...+...|..+...+.+.|+.+.|..-|..+.++++.
T Consensus 710 Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 710 ALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred HHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 874 4555 5678899999999998777766 888876 3457889999999999999999999999999999887
Q ss_pred Cch
Q 036165 551 SAA 553 (566)
Q Consensus 551 ~~~ 553 (566)
+|.
T Consensus 787 ~PV 789 (799)
T KOG4162|consen 787 NPV 789 (799)
T ss_pred CCc
Confidence 764
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3e-08 Score=95.37 Aligned_cols=482 Identities=13% Similarity=0.165 Sum_probs=280.1
Q ss_pred hhhhhHHHHHHhhhhhhhhhcccccchhhcccchhhhhhhhhhcccccccCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 036165 23 DFYSIRRIYFALLSGTQLVLSCSKSASDAGKPLINGIFIEAHYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKILHA 102 (566)
Q Consensus 23 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 102 (566)
.++.++..|......|.+++...+.-+.+++.+ + ..-+...|...++.....+-++.+..+++
T Consensus 100 kmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraL------------p-----vtqH~rIW~lyl~Fv~~~~lPets~rvyr 162 (835)
T KOG2047|consen 100 KMPRIWLDYLQFLIKQGLITRTRRTFDRALRAL------------P-----VTQHDRIWDLYLKFVESHGLPETSIRVYR 162 (835)
T ss_pred cCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhC------------c-----hHhhccchHHHHHHHHhCCChHHHHHHHH
Confidence 456777788877777776666555433322222 1 11223345666666667777888888888
Q ss_pred HHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC----------CCcchHHHHHHHHHhcCChHHH---HHHHHH
Q 036165 103 QLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK----------TNIHRWIALTGAYARRGYHQEA---VTVFHE 169 (566)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~~~~~~li~~~~~~g~~~~A---~~~~~~ 169 (566)
+.++- +|...+..|..+++.+++++|.+.+..+.. .+-..|+.+-...+++-+.-.. ..+++.
T Consensus 163 RYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~ 238 (835)
T KOG2047|consen 163 RYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRG 238 (835)
T ss_pred HHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHh
Confidence 88763 455577888888888998888888877654 1333566655555554333222 223333
Q ss_pred hHHCCCCCCc--chHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc----------------C---
Q 036165 170 MHIQGLKQNI--FVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKC----------------G--- 228 (566)
Q Consensus 170 m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~----------------g--- 228 (566)
+.. .-+|. ..|.+|...|.+.|.++.|..++++.+..-. ...-++.+-+.|... |
T Consensus 239 gi~--rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~e 314 (835)
T KOG2047|consen 239 GIR--RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEE 314 (835)
T ss_pred hcc--cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChh
Confidence 322 22332 3567777777777777777777777665421 222222222222211 1
Q ss_pred ---CHHHHHHHHHhcCCC---------------ChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCcc------HHHHH
Q 036165 229 ---SVEKAKKVFDEMVEK---------------DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN------VVTWN 284 (566)
Q Consensus 229 ---~~~~A~~~~~~~~~~---------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~ 284 (566)
+++-...-|+.+..+ ++..|..-+. +..|+..+-...+.+.... +.|. ...|.
T Consensus 315 d~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~ 391 (835)
T KOG2047|consen 315 DDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWV 391 (835)
T ss_pred hhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHH
Confidence 233333444444222 2233333222 2345666666667666532 2221 23467
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-------------
Q 036165 285 TLISGFSKSGDQVMVSKLFQLMRAKGVEPD---VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCP------------- 348 (566)
Q Consensus 285 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~------------- 348 (566)
.+...|-..|+++.|..+|++..+-..+-- ..+|..-...-.+..+++.|+++++......-.|
T Consensus 392 ~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~ 471 (835)
T KOG2047|consen 392 EFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQA 471 (835)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHH
Confidence 778888899999999999998876543322 3455555555666778888888887765321111
Q ss_pred ----CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCh-hHH
Q 036165 349 ----TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE----RNT-VTW 419 (566)
Q Consensus 349 ----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~ 419 (566)
+...+...+..--..|-++....+++.+++..+- ++.+.......+-...-++++.+++++-.. |++ ..|
T Consensus 472 rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW 550 (835)
T KOG2047|consen 472 RLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIW 550 (835)
T ss_pred HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHH
Confidence 1123344444555677888888899999887665 555555555666677778999999988775 554 357
Q ss_pred HHHHHHHHh---cCChHHHHHHHHHhhhcCCCCHHH--HHHHHHHHhccCChHHHHHHHHHhHHh---------------
Q 036165 420 NSMIFGCAN---HGYCDEAIELFNQMEERKKLDHLS--FTAVLTACCHVGLVELGQRLFNMMQEK--------------- 479 (566)
Q Consensus 420 ~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~--------------- 479 (566)
+.-+.-+.+ ....+.|..+|++..+..+|...- |......--+-|....|+.+++++...
T Consensus 551 ~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~ 630 (835)
T KOG2047|consen 551 NTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIK 630 (835)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 766655543 235889999999999876665432 322222233456666677776665432
Q ss_pred -----cCCCCChhHHHHH----------------HHHHHhcCCHHHHHHHHHhcC--CCC--CHHHHHHHHHHHHhcCC
Q 036165 480 -----YKIMPRTEHYACM----------------VDLLGRAGRLAEAYEMIKTMS--TEP--DLFVWGALLGACKNHGN 533 (566)
Q Consensus 480 -----~~~~p~~~~~~~l----------------~~~~~~~g~~~~A~~~~~~~~--~~p--~~~~~~~l~~~~~~~g~ 533 (566)
+|+.-+..+|.-- .+.=.+.|..+.|..++.-.. ..| +...|.+.=.--.++|+
T Consensus 631 kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 631 KAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 2333333333221 122234566666666665433 123 45556666666667776
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-08 Score=92.84 Aligned_cols=299 Identities=11% Similarity=-0.017 Sum_probs=212.2
Q ss_pred HHHHcCChhHHHHHHHHhhhC-CCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCh
Q 036165 254 GYVQRGLATEALNLVEEIGTP-RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDV-VSWTSVISGLVHNFCN 331 (566)
Q Consensus 254 ~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~ 331 (566)
+.+-.++...+...+-.+... -.+-|......+...+...|+.++|...|+..... .|+. .......-.+...|+.
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~ 282 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGC 282 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCH
Confidence 334455555555554444332 23445666777777888888888888888776644 2221 1111222234566777
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036165 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411 (566)
Q Consensus 332 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 411 (566)
+....+...+.... .-+...+..-+......++++.|..+-++.++.... +...+-.-..++...|+.++|.-.|+..
T Consensus 283 e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~A 360 (564)
T KOG1174|consen 283 EQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTA 360 (564)
T ss_pred hhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHH
Confidence 77777776665432 122222333333445567778888887777765543 5556666667888899999999999876
Q ss_pred CC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHH-HHHh-ccCChHHHHHHHHHhHHhcCCCCCh
Q 036165 412 SE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVL-TACC-HVGLVELGQRLFNMMQEKYKIMPRT 486 (566)
Q Consensus 412 ~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~p~~ 486 (566)
.. -+..+|.-|+.+|...|.+.+|.-+-+......+.+..+...+. .+|. ....-++|.++++... .+.|+.
T Consensus 361 q~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y 437 (564)
T KOG1174|consen 361 QMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIY 437 (564)
T ss_pred HhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCcc
Confidence 64 46789999999999999999999988888877777888877774 4443 3334588899988877 456764
Q ss_pred -hHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHH
Q 036165 487 -EHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLT 559 (566)
Q Consensus 487 -~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 559 (566)
...+.+...+...|+.+++..++++.. ..||....+.|...+...+.+++|+..|..++.++|++.....-|-
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLR 512 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 455677889999999999999999987 5699999999999999999999999999999999999977665543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-11 Score=108.55 Aligned_cols=240 Identities=12% Similarity=0.030 Sum_probs=204.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc
Q 036165 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC 398 (566)
Q Consensus 319 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 398 (566)
+.+..+|.+.|.+.+|...|+.-++. .|-..||..+-++|.+..+.+.|..++.+-++.- +-++....-..+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 67888999999999999999988876 5777788889999999999999999998877753 33555566778888889
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 036165 399 GFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNM 475 (566)
Q Consensus 399 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 475 (566)
++.++|.++++...+ .++....++...|.-.++++-|+..|+++.+....++..|+.+.-+|...+++|-++..|.+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 999999999998876 46667777788899999999999999999999888999999999999999999999999999
Q ss_pred hHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC
Q 036165 476 MQEKYKIMPR--TEHYACMVDLLGRAGRLAEAYEMIKTMST--EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPES 551 (566)
Q Consensus 476 ~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 551 (566)
+... .-.|+ .++|-.+.....-.|++.-|.+.|+-... ......++.|.-.-.+.|+.++|..++..+-...|+.
T Consensus 384 Alst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 384 ALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred HHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 9875 44444 47888999999999999999999998772 3456788999888899999999999999999999998
Q ss_pred chHHHHHHHHH
Q 036165 552 AANNMLLTDLY 562 (566)
Q Consensus 552 ~~~~~~l~~~~ 562 (566)
.+...+|+-+-
T Consensus 463 ~E~~~Nl~~~s 473 (478)
T KOG1129|consen 463 AEVTTNLQFMS 473 (478)
T ss_pred cccccceeEEe
Confidence 87776665443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-10 Score=105.99 Aligned_cols=199 Identities=15% Similarity=0.107 Sum_probs=158.9
Q ss_pred CCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHH
Q 036165 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIF 424 (566)
Q Consensus 348 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 424 (566)
.....+..+...+...|++++|...++.+.+..+. +...+..+...|...|++++|...+++..+ .+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 34566778888889999999999999998876533 567778888899999999999999987764 34567777888
Q ss_pred HHHhcCChHHHHHHHHHhhhc--CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH
Q 036165 425 GCANHGYCDEAIELFNQMEER--KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502 (566)
Q Consensus 425 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 502 (566)
.+...|++++|.+.+++..+. .+.....+..+..++...|++++|...+++.... .+.+...+..+...+...|++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCH
Confidence 888999999999999998875 2334556777888889999999999999998864 233466788888999999999
Q ss_pred HHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Q 036165 503 AEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEP 549 (566)
Q Consensus 503 ~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 549 (566)
++|...+++.. .+.+...+..+...+...|+.++|....+.+.+..|
T Consensus 186 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 186 KDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 99999998876 234566777777888889999999998888776654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.1e-10 Score=103.21 Aligned_cols=197 Identities=10% Similarity=0.047 Sum_probs=161.2
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHH
Q 036165 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392 (566)
Q Consensus 313 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 392 (566)
.....+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++.|...++...+.... +...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence 345677888889999999999999999988753 445667788888899999999999999999887644 556777888
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChH
Q 036165 393 DMYAKCGFISEARTLFDKMSE-----RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVE 467 (566)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 467 (566)
..+...|++++|...+++..+ .....+..+...+...|++++|...+++..+..+.+...+..+...+...|+++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 899999999999999998764 234466777888889999999999999988876667778888899999999999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 468 LGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 468 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
+|...++++.+. .+.+...+..++..+...|+.++|..+.+.+.
T Consensus 187 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 187 DARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999998875 24456667778888889999999988877654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.2e-10 Score=108.37 Aligned_cols=235 Identities=15% Similarity=0.127 Sum_probs=148.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----CC-CCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 036165 281 VTWNTLISGFSKSGDQVMVSKLFQLMRAK-----GV-EPDVV-SWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353 (566)
Q Consensus 281 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 353 (566)
.+...+...|...|+++.|..+++...+. |. .|.+. ..+.+...|...+++++|..+|+++...-
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~-------- 271 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR-------- 271 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH--------
Confidence 45555667777777777777777665443 10 11111 12234445555556666665555554310
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHHhCCC--CcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC----------CChh-HHH
Q 036165 354 SSILPACASAANMRRGKEIHGCAIVMGVE--GDLHVRSALVDMYAKCGFISEARTLFDKMSE----------RNTV-TWN 420 (566)
Q Consensus 354 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~~-~~~ 420 (566)
+.. .|.. .-..+++.|..+|.+.|++++|...+++..+ +.+. .++
T Consensus 272 --------------------e~~--~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~ 329 (508)
T KOG1840|consen 272 --------------------EEV--FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLS 329 (508)
T ss_pred --------------------HHh--cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHH
Confidence 000 1111 1133455555666666666666655554432 2222 355
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhc----CCCC----HHHHHHHHHHHhccCChHHHHHHHHHhHHhc----C-CCCC-h
Q 036165 421 SMIFGCANHGYCDEAIELFNQMEER----KKLD----HLSFTAVLTACCHVGLVELGQRLFNMMQEKY----K-IMPR-T 486 (566)
Q Consensus 421 ~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~-~~p~-~ 486 (566)
.+...+...+++++|..++++..+. ..++ ..+++.|...+...|++++|.+++++++... | ..+. .
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~ 409 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG 409 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence 5666777888888888888876655 2222 2478999999999999999999999887652 1 1222 3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC--------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036165 487 EHYACMVDLLGRAGRLAEAYEMIKTMS--------TEPD-LFVWGALLGACKNHGNIELAEIAAKHLS 545 (566)
Q Consensus 487 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 545 (566)
..++.|...|.+.+++++|.++|.+.. ..|+ ..+|..|...|.+.|++++|+++.+.+.
T Consensus 410 ~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 410 KPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 567788888999999998888887765 1233 4678899999999999999999998887
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.6e-10 Score=116.51 Aligned_cols=242 Identities=10% Similarity=0.012 Sum_probs=127.7
Q ss_pred CHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhc---------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 036165 295 DQVMVSKLFQLMRAKGVEP-DVVSWTSVISGLVHN---------FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364 (566)
Q Consensus 295 ~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 364 (566)
++++|.+.+++..+. .| +...|..+..++... +++++|...+++..+.. +.+...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 355666666666654 33 234454454444321 23566666666666543 334455555556666666
Q ss_pred chHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChh-HHHHHHHHHHhcCChHHHHHHHHH
Q 036165 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--RNTV-TWNSMIFGCANHGYCDEAIELFNQ 441 (566)
Q Consensus 365 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~A~~~~~~ 441 (566)
++++|...++++++.++. +...+..+...+...|++++|...+++..+ |+.. .+..++..+...|++++|...+++
T Consensus 353 ~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 666666666666665533 444555666666666666666666666554 3221 222333344455666666666666
Q ss_pred hhhcCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhcC----CC
Q 036165 442 MEERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR-TEHYACMVDLLGRAGRLAEAYEMIKTMS----TE 515 (566)
Q Consensus 442 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~ 515 (566)
+.+..+| ++..+..+..++...|++++|...++++... .|+ ....+.+...|...| ++|...++++. ..
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 6554333 3344555566666666666666666665432 232 223344444555555 35555554443 12
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC
Q 036165 516 PDLFVWGALLGACKNHGNIELAEIAAKHLSELE 548 (566)
Q Consensus 516 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 548 (566)
+....+ +...+.-.|+.+.+... +++.+.+
T Consensus 507 ~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 222222 22334445555555444 5555544
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.4e-09 Score=106.33 Aligned_cols=268 Identities=15% Similarity=0.092 Sum_probs=193.4
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCC----CcchHHHHHHHHHhcCChHHHHHHHHHhHHCCC
Q 036165 100 LHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKT----NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGL 175 (566)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 175 (566)
++..+...|+.|+..+|..+|.-|+..|+++.|- +|.-|.-. +...++.++.+..++++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4455667899999999999999999999999998 88877653 4557889998888888877665
Q ss_pred CCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChhhHHHHHH
Q 036165 176 KQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV--EKDIVAMNAMVS 253 (566)
Q Consensus 176 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~ 253 (566)
.|...||..++.+|...||+..-..+-+.+ ..+...+...|.-.....++..+. ......-...+.
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdL------------e~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~il 147 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDL------------ESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAIL 147 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHH------------HHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHH
Confidence 678889999999999999976622222212 224445555666555555665541 112222234455
Q ss_pred HHHHcCChhHHHHHHHHhhhCC-CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChh
Q 036165 254 GYVQRGLATEALNLVEEIGTPR-VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCND 332 (566)
Q Consensus 254 ~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 332 (566)
-..-.|-++.+++++..+.... ..|-.+ +++-+..... ..+++........-.|++.+|.+++.+-..+|+.+
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d 221 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVD 221 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchh
Confidence 5667788888888887765321 122222 3555444332 23333333332212689999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCC
Q 036165 333 EAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF 400 (566)
Q Consensus 333 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 400 (566)
.|..++.+|.+.|++.+.+-|-.++-+ .++...+..++.-|...|+.|+..++...+....+.|.
T Consensus 222 ~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 222 GAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 999999999999999999888777766 88889999999999999999999999888777777555
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.9e-08 Score=94.65 Aligned_cols=406 Identities=13% Similarity=-0.008 Sum_probs=239.2
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCc-hhHHHHHH
Q 036165 143 NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD-AFVVSSLI 221 (566)
Q Consensus 143 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~ 221 (566)
+...|..+.-++...|+++.+.+.|++.... ..-....|..+-..+...|.-..|..+++........|+ ...+-..-
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 4555667777888888888888888887654 333555677777777777777778888777665443343 33333333
Q ss_pred HHHH-hcCCHHHHHHHHHhcCC--------CChhhHHHHHHHHHHc-----------CChhHHHHHHHHhhhCC-CCccH
Q 036165 222 DMYS-KCGSVEKAKKVFDEMVE--------KDIVAMNAMVSGYVQR-----------GLATEALNLVEEIGTPR-VKPNV 280 (566)
Q Consensus 222 ~~~~-~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~~-~~p~~ 280 (566)
..|. +.+.+++++.+-.+... -....|..+.-+|... ....++++.+++..+.+ -.|+.
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 3333 33555555554444422 1233444444444332 12345666777765543 23444
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036165 281 VTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360 (566)
Q Consensus 281 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 360 (566)
..|.. --|+..++++.|.+..++..+.+-..+...|..+...+...+++.+|+.+.+...+.- .-|......-+..-
T Consensus 481 if~la--lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 481 IFYLA--LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIE 557 (799)
T ss_pred HHHHH--HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhh
Confidence 43333 3455567788888888887777666677778877777888888888888777765431 11111111112222
Q ss_pred HccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC------CChhHHHHHHHHHHhcCChHH
Q 036165 361 ASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE------RNTVTWNSMIFGCANHGYCDE 434 (566)
Q Consensus 361 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~ 434 (566)
...++.+++......+... |... ......++-....+....+.- ..+.++..+.......+....
T Consensus 558 ~~~~~~e~~l~t~~~~L~~--------we~~-~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLAL--------WEAE-YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hhcccHHHHHHHHHHHHHH--------HHhh-hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence 2244444444433333221 0000 000011112222233322221 122233333222221111100
Q ss_pred HHHHHHHhhhc-CC--CC------HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 036165 435 AIELFNQMEER-KK--LD------HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505 (566)
Q Consensus 435 A~~~~~~~~~~-~~--~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 505 (566)
-... +... .. |+ ...|......+.+.+..++|...+.++... .+.....|.-....+...|++++|
T Consensus 629 se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA 703 (799)
T KOG4162|consen 629 SELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEA 703 (799)
T ss_pred cccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHH
Confidence 0000 2222 22 22 123556667788899999999888888753 445667788888899999999999
Q ss_pred HHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHH--HHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 506 YEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAEI--AAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 506 ~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
.+.|.... ..| ++....++...+.+.|+..-|.. ++..+++++|.++.++..||.++.++|
T Consensus 704 ~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~G 768 (799)
T KOG4162|consen 704 KEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLG 768 (799)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence 99998877 455 57788999999999999888888 999999999999999999999998887
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.8e-08 Score=87.24 Aligned_cols=427 Identities=11% Similarity=0.007 Sum_probs=256.0
Q ss_pred HHHHhhcCChHHHHHHhccCCCC---CcchHHH-HHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCCh
Q 036165 120 ITFYTECQNIHHARMLFDEIPKT---NIHRWIA-LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI 195 (566)
Q Consensus 120 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 195 (566)
+.-+....++..|+.+++--..- ...+.+. +..++.+-|++++|+..+.-+.+. -.|+......+.-...-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence 33445567888888887643321 1112222 345667789999999999888775 355566666666666667888
Q ss_pred hHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCC
Q 036165 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275 (566)
Q Consensus 196 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 275 (566)
.+|+.+-.+. +.++-....|.+...+.|+-++-..+-+.+.+.. .---+|.+.....-.+.+|++++.+....
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~d- 180 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQD- 180 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 8888776553 2334444556666777788777777666664432 22334555555566789999999988764
Q ss_pred CCccHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 036165 276 VKPNVVTWNTLI-SGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATIS 354 (566)
Q Consensus 276 ~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 354 (566)
.|.-...|.-+ -+|.+..-++-+.++++-..+. ++.++..-|.......+.=.-..|..-.+.+.+.+-..-+..-.
T Consensus 181 -n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~ 258 (557)
T KOG3785|consen 181 -NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEY 258 (557)
T ss_pred -ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHH
Confidence 34555555444 3455677778888888777665 33344555555544444333334444455554443211111111
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcC----
Q 036165 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHG---- 430 (566)
Q Consensus 355 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~---- 430 (566)
.+-.-+.--.+-+.|.+++--+.+. -+.....|+--|.+.+++.+|..+.++....++.-|-.-.-.++..|
T Consensus 259 l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~g 334 (557)
T KOG3785|consen 259 LCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETG 334 (557)
T ss_pred HHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcC
Confidence 1111111223456677766655543 22334457777899999999999998887544444433333333333
Q ss_pred ---ChHHHHHHHHHhhhc-CC-CCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 036165 431 ---YCDEAIELFNQMEER-KK-LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505 (566)
Q Consensus 431 ---~~~~A~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 505 (566)
...-|.+.|+-.-++ .. ....--.++.+++.-..++++++.+++.+..- -...|.. --.+..+++..|.+.+|
T Consensus 335 SreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~F-n~N~AQAk~atgny~ea 412 (557)
T KOG3785|consen 335 SREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDF-NLNLAQAKLATGNYVEA 412 (557)
T ss_pred cHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchh-hhHHHHHHHHhcChHHH
Confidence 244455555555444 22 22223455666666677899999999988764 2222333 33578999999999999
Q ss_pred HHHHHhcCC--CCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHhhhC-C-CCchHHHHHHHHHhhc
Q 036165 506 YEMIKTMST--EPDLFVWGALL-GACKNHGNIELAEIAAKHLSELE-P-ESAANNMLLTDLYANA 565 (566)
Q Consensus 506 ~~~~~~~~~--~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~ 565 (566)
.++|-++.. -.|..+|.+++ ++|.+.|+++.|..++ ++.+ | +.......+++.+.++
T Consensus 413 Eelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~ 474 (557)
T KOG3785|consen 413 EELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKA 474 (557)
T ss_pred HHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHH
Confidence 999988762 24667776655 7788999999887665 4332 2 3344555556655443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.3e-08 Score=97.75 Aligned_cols=286 Identities=14% Similarity=0.130 Sum_probs=171.4
Q ss_pred HHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc----
Q 036165 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKC---- 227 (566)
Q Consensus 152 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~---- 227 (566)
..+...|++++|++.++.-... +.............+.+.|+.++|..++..+++.+ +.+..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccc
Confidence 3455667777777777664332 33333444555566667777777777777777765 34444445555444222
Q ss_pred -CCHHHHHHHHHhcCCCC--hhhHHHHHHHHHHcCChh-HHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHH
Q 036165 228 -GSVEKAKKVFDEMVEKD--IVAMNAMVSGYVQRGLAT-EALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLF 303 (566)
Q Consensus 228 -g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g~~~-~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 303 (566)
.+.+...++++++.... ..+...+.-.+.....+. .+...+..+..+|+++ +|+.|-..|......+-..+++
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHH
Confidence 24556666666663321 111111111111111222 3344555666677654 3444545555444444455555
Q ss_pred HHHHHc----C----------CCCChh--hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCch
Q 036165 304 QLMRAK----G----------VEPDVV--SWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPT-SATISSILPACASAANM 366 (566)
Q Consensus 304 ~~~~~~----~----------~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~ 366 (566)
...... + -.|+.. ++.-+...|...|++++|++++++.+++ .|+ ...|..-...+-..|++
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCH
Confidence 554321 1 123332 3355566777888888888888888876 455 45677777888888888
Q ss_pred HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh----------HH--HHHHHHHHhcCChHH
Q 036165 367 RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV----------TW--NSMIFGCANHGYCDE 434 (566)
Q Consensus 367 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~--~~l~~~~~~~~~~~~ 434 (566)
++|...++.+...... |..+-+..+..+.++|++++|..++....+++.. .| .....+|.+.|++..
T Consensus 245 ~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 245 KEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 8888888888876654 6677777788888888998888888777654311 22 234667888888888
Q ss_pred HHHHHHHhhhc
Q 036165 435 AIELFNQMEER 445 (566)
Q Consensus 435 A~~~~~~~~~~ 445 (566)
|++.|..+.+.
T Consensus 324 ALk~~~~v~k~ 334 (517)
T PF12569_consen 324 ALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHH
Confidence 88887777665
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.1e-10 Score=113.84 Aligned_cols=234 Identities=13% Similarity=0.044 Sum_probs=172.6
Q ss_pred ChhhHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHc---------cCchHHHHHHHHHHHH
Q 036165 314 DVVSWTSVISGLVH-----NFCNDEAFDTFKEMLSQGFCPT-SATISSILPACAS---------AANMRRGKEIHGCAIV 378 (566)
Q Consensus 314 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~ 378 (566)
+...|...+++... .+..++|...|++..+. .|+ ...+..+..++.. .+++++|...++++++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44455555554322 23467999999999875 454 4455555555442 2347899999999998
Q ss_pred hCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHH
Q 036165 379 MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--R-NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTA 455 (566)
Q Consensus 379 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 455 (566)
..+. +...+..+..++...|++++|...|++..+ | +...+..+...+...|++++|...+++..+..+.+...+..
T Consensus 333 ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~ 411 (553)
T PRK12370 333 LDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGIT 411 (553)
T ss_pred cCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 7654 677888888999999999999999998875 4 45678888899999999999999999999875555555555
Q ss_pred HHHHHhccCChHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHH-HHHHHHHHHHhcC
Q 036165 456 VLTACCHVGLVELGQRLFNMMQEKYKIMP-RTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLF-VWGALLGACKNHG 532 (566)
Q Consensus 456 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~l~~~~~~~g 532 (566)
++..+...|++++|...++++... . +| ++..+..+..+|...|++++|...++++. ..|+.. .++.+...|...|
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~-~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQ-H-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHh-c-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 555677789999999999998765 2 34 45567788899999999999999999876 334433 3455556677777
Q ss_pred CHHHHHHHHHHHhh---hCCCCchH
Q 036165 533 NIELAEIAAKHLSE---LEPESAAN 554 (566)
Q Consensus 533 ~~~~A~~~~~~~~~---~~p~~~~~ 554 (566)
++|...++++++ ..|.++..
T Consensus 490 --~~a~~~l~~ll~~~~~~~~~~~~ 512 (553)
T PRK12370 490 --ERALPTIREFLESEQRIDNNPGL 512 (553)
T ss_pred --HHHHHHHHHHHHHhhHhhcCchH
Confidence 488888888775 34555544
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-11 Score=80.13 Aligned_cols=50 Identities=40% Similarity=0.699 Sum_probs=40.7
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhc
Q 036165 243 KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK 292 (566)
Q Consensus 243 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 292 (566)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 57778888888888888888888888888888888888888888887764
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.9e-10 Score=98.60 Aligned_cols=227 Identities=13% Similarity=0.090 Sum_probs=116.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 036165 249 NAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHN 328 (566)
Q Consensus 249 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 328 (566)
+.+..+|.+.|.+.+|.+.|+.-.+. .|-+.||..|-++|.+..+.+.|+.++.+-.+. ++.++....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45556666666666666666655443 445555655666666666666666666655544 222333334445555555
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHH
Q 036165 329 FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408 (566)
Q Consensus 329 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 408 (566)
++.++|.++|+...+.. +.+......+...|.-.++.+.|..++..+++.|+. ++..
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speL--------------------- 360 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPEL--------------------- 360 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHH---------------------
Confidence 66666666666655442 233333444444444455555555555555555544 4444
Q ss_pred HhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhc-CCCCH--HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC
Q 036165 409 DKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDH--LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR 485 (566)
Q Consensus 409 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 485 (566)
|+.+.-+|...++++-++.-|++.... ..|+. ..|-.+.......||+..|.+.|+..... -.-.
T Consensus 361 ----------f~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h 428 (478)
T KOG1129|consen 361 ----------FCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQH 428 (478)
T ss_pred ----------HhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--Ccch
Confidence 444444444444555555555554444 22322 23445555555555555555555555432 1223
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 486 TEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 486 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
...++.|.-.-.+.|+.++|..+++.+.
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 3445555555555555555555555444
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-11 Score=80.38 Aligned_cols=50 Identities=20% Similarity=0.458 Sum_probs=45.0
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcc
Q 036165 142 TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH 191 (566)
Q Consensus 142 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 191 (566)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999998864
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.1e-09 Score=100.38 Aligned_cols=232 Identities=21% Similarity=0.216 Sum_probs=117.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC----------CChh-hHHHHHHHHHHcCChhHHHHHHHHhhh-----CC-CCc
Q 036165 216 VVSSLIDMYSKCGSVEKAKKVFDEMVE----------KDIV-AMNAMVSGYVQRGLATEALNLVEEIGT-----PR-VKP 278 (566)
Q Consensus 216 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~-~~p 278 (566)
+...+...|...|+++.|+.+++...+ +.+. ..+.+...|...+++++|..+|+++.. .| ..|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 444466666666777776666665522 1222 234566778888888888888888753 11 112
Q ss_pred -cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----CCC-CC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 036165 279 -NVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-----GVE-PD-VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTS 350 (566)
Q Consensus 279 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 350 (566)
-..+++.|..+|.+.|++++|...++...+. |.. |. ...++.++..+...+++++|..+++...+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i------ 354 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI------ 354 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH------
Confidence 2345666677777777777777666654331 100 01 112233333444444444444444433221
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHhCCC--CcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----Chh
Q 036165 351 ATISSILPACASAANMRRGKEIHGCAIVMGVE--GDLHVRSALVDMYAKCGFISEARTLFDKMSE-------R----NTV 417 (566)
Q Consensus 351 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~ 417 (566)
+... .|.. .-..+++.|...|.+.|++++|.++++++.. . .-.
T Consensus 355 ----------------------~~~~--~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~ 410 (508)
T KOG1840|consen 355 ----------------------YLDA--PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGK 410 (508)
T ss_pred ----------------------HHhh--ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhH
Confidence 0000 0110 1234556666666666666666666655442 0 112
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhc---CCCC----HHHHHHHHHHHhccCChHHHHHHHHHhH
Q 036165 418 TWNSMIFGCANHGYCDEAIELFNQMEER---KKLD----HLSFTAVLTACCHVGLVELGQRLFNMMQ 477 (566)
Q Consensus 418 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 477 (566)
.++.|...|.+.+++.+|.++|.+...- ..|+ ..+|..|..+|...|+++.|+++.+.+.
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3444555555555555555555543221 1111 1245555555555555555555555443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.4e-09 Score=96.48 Aligned_cols=226 Identities=12% Similarity=0.005 Sum_probs=150.4
Q ss_pred CChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 036165 329 FCNDEAFDTFKEMLSQG-FCPT--SATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR 405 (566)
Q Consensus 329 g~~~~A~~~~~~m~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 405 (566)
+..+.++.-+.+++... ..|+ ...+......+...|+.+.|...+...++..+. +...++.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 45566666676666432 1222 234666666777888888888888887776543 6778888888899999999999
Q ss_pred HHHHhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCC
Q 036165 406 TLFDKMSE--R-NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482 (566)
Q Consensus 406 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 482 (566)
..|++..+ | +..+|..+..++...|++++|.+.|++..+..+.+.. .......+...+++++|...+++.... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~--~ 195 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY-RALWLYLAESKLDPKQAKENLKQRYEK--L 195 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHccCCHHHHHHHHHHHHhh--C
Confidence 98888765 4 4567777888888889999999999998876554442 122222344567889999999776543 3
Q ss_pred CCChhHHHHHHHHHHhcCCHHH--HHHHHHhcCC-C-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC-CCch
Q 036165 483 MPRTEHYACMVDLLGRAGRLAE--AYEMIKTMST-E-----PDLFVWGALLGACKNHGNIELAEIAAKHLSELEP-ESAA 553 (566)
Q Consensus 483 ~p~~~~~~~l~~~~~~~g~~~~--A~~~~~~~~~-~-----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~ 553 (566)
.|+...+ .++. ...|+..+ +.+.+.+... . .....|..+...+.+.|++++|+..|+++++.+| +.+.
T Consensus 196 ~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e 272 (296)
T PRK11189 196 DKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVE 272 (296)
T ss_pred CccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHH
Confidence 3333222 2332 33454433 3333332221 1 1345788889999999999999999999999986 5565
Q ss_pred HHHHHHHH
Q 036165 554 NNMLLTDL 561 (566)
Q Consensus 554 ~~~~l~~~ 561 (566)
+...+..+
T Consensus 273 ~~~~~~e~ 280 (296)
T PRK11189 273 HRYALLEL 280 (296)
T ss_pred HHHHHHHH
Confidence 55555444
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-08 Score=86.17 Aligned_cols=200 Identities=14% Similarity=0.027 Sum_probs=134.4
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCC
Q 036165 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGY 431 (566)
Q Consensus 355 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 431 (566)
.+.-.|...|+...|..-+++.++..+. +..++..+...|.+.|+.+.|.+.|++..+ .+-...|....-+|.+|+
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCC
Confidence 3444555566666666666666555433 455666666777777777777777776553 344566666666777777
Q ss_pred hHHHHHHHHHhhhc--CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 036165 432 CDEAIELFNQMEER--KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509 (566)
Q Consensus 432 ~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 509 (566)
+++|...|++.... ......+|..+.-+..+.|+.+.|...|++..+. .+-.+.....+.....+.|++..|..++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 77777777777765 3444567777777777788888888888877764 2223455666777777888888887777
Q ss_pred HhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHH
Q 036165 510 KTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNML 557 (566)
Q Consensus 510 ~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 557 (566)
++.. ..++..+..--|+.-.+.||.+.+.+.=.++....|..+.+-..
T Consensus 197 ~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~f 246 (250)
T COG3063 197 ERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQTF 246 (250)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHhH
Confidence 7765 33666777777777778888887777777777778877665443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.5e-07 Score=83.63 Aligned_cols=284 Identities=10% Similarity=-0.031 Sum_probs=202.6
Q ss_pred CCccHHHHHHHHHHHh--cCCCHHHHHHHHHHHHH-cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-
Q 036165 276 VKPNVVTWNTLISGFS--KSGDQVMVSKLFQLMRA-KGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA- 351 (566)
Q Consensus 276 ~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~- 351 (566)
++|...+...-+.+++ -.++...+...+-.+.. .-+.-|+.....+..++...|+.++|+..|++.... .|+..
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~ 267 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVE 267 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhhh
Confidence 3444444444444433 34444444444444433 335667888899999999999999999999998754 34433
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHh
Q 036165 352 TISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCAN 428 (566)
Q Consensus 352 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 428 (566)
........+...|+.+....+...+....-. +...+..-+......++++.|..+-++..+ .++..+-.-...+.+
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~-ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAKVKY-TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIA 346 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhhhhc-chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHh
Confidence 2333444556778888877776666543211 222333334445566789999999888775 445556555678889
Q ss_pred cCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHH-HHHHhc-CCHHHHH
Q 036165 429 HGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV-DLLGRA-GRLAEAY 506 (566)
Q Consensus 429 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~-g~~~~A~ 506 (566)
.+++++|.-.|+..+...|-+..+|..|+++|...|.+.+|...-+..... ++-+..+...+. ..+.-. .--++|.
T Consensus 347 ~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHH
Confidence 999999999999998877788999999999999999999999888877764 445666665553 334332 3457899
Q ss_pred HHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhc
Q 036165 507 EMIKTMS-TEPD-LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565 (566)
Q Consensus 507 ~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 565 (566)
+++++.. .+|+ ....+.+...|...|..++++.++++.+...||+ ..+..|+.++..+
T Consensus 425 kf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~ 484 (564)
T KOG1174|consen 425 KFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQ 484 (564)
T ss_pred HHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHh
Confidence 9999987 5676 4456777788999999999999999999999866 6799999998765
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.3e-07 Score=91.81 Aligned_cols=251 Identities=13% Similarity=0.082 Sum_probs=117.4
Q ss_pred HHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--hh-hHHHHHHHHHHc-----C
Q 036165 188 ACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKD--IV-AMNAMVSGYVQR-----G 259 (566)
Q Consensus 188 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~-~~~~li~~~~~~-----g 259 (566)
.+...|++++|.+.++.-.+. +.............+.+.|+.++|..++..+.+.| -. -|..+..+..-. .
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccc
Confidence 344566666666666554333 33344455566666666666666666666664432 22 233333333222 1
Q ss_pred ChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 036165 260 LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQV-MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTF 338 (566)
Q Consensus 260 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 338 (566)
+.+....+|+++... -|.......+.-.+.....+. .+...+..+...|+++ +|+.+-..|....+.+-...++
T Consensus 92 ~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 92 DVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHH
Confidence 345555566655443 233333322222222212222 2334444445555433 4444444444444444444444
Q ss_pred HHHHHC----C----------CCCCH--HHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHH
Q 036165 339 KEMLSQ----G----------FCPTS--ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFIS 402 (566)
Q Consensus 339 ~~m~~~----~----------~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 402 (566)
...... + -+|+. .++..+...|...|++++|.++.+..++..+. .+..|..-...|-+.|++.
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHH
Confidence 443321 0 01222 12333444455555555555555555554322 2445555555555555555
Q ss_pred HHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 036165 403 EARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEER 445 (566)
Q Consensus 403 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 445 (566)
+|.+.++.... .|...-+-.+..+.+.|+.++|.+++....+.
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 55555554443 23333444444555555555555555555443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.9e-06 Score=80.78 Aligned_cols=450 Identities=13% Similarity=0.092 Sum_probs=279.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCC---CcchHHHHHHHHHhc
Q 036165 81 YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKT---NIHRWIALTGAYARR 157 (566)
Q Consensus 81 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~ 157 (566)
|..+++.| ..+.+..+....+.+++. .+..+.+....--.+...|+-++|......-... +.+.|..+.-.+...
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 44444444 445566666666666663 3333333333333345568888998888766654 456798888888888
Q ss_pred CChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 036165 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVF 237 (566)
Q Consensus 158 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 237 (566)
.++++|++.|+.....+ +-|...+.-+--.-++.|+++..........+.. +.....|..+..++.-.|+...|.+++
T Consensus 89 K~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988753 2244455544444567788888877777777653 334556777888888889999999998
Q ss_pred HhcCC-----CChhhHHHH------HHHHHHcCChhHHHHHHHHhhhCCCCccHHH-HHHHHHHHhcCCCHHHHHHHHHH
Q 036165 238 DEMVE-----KDIVAMNAM------VSGYVQRGLATEALNLVEEIGTPRVKPNVVT-WNTLISGFSKSGDQVMVSKLFQL 305 (566)
Q Consensus 238 ~~~~~-----~~~~~~~~l------i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~ 305 (566)
++..+ ++...+... .....+.|..++|++-+..-... ..|... -..-...+.+.+++++|..++..
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 88732 333333322 23456678888888877664322 222222 23344567788999999999999
Q ss_pred HHHcCCCCChhhHHHHH-HHHHhcCChhHHH-HHHHHHHHCCCCCCHHHHHHH-HHHHHccCchHHHHHHHHHHHHhCCC
Q 036165 306 MRAKGVEPDVVSWTSVI-SGLVHNFCNDEAF-DTFKEMLSQGFCPTSATISSI-LPACASAANMRRGKEIHGCAIVMGVE 382 (566)
Q Consensus 306 ~~~~~~~~~~~~~~~li-~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~ 382 (566)
++.. .||...|.... .++.+-.+..++. .+|....+. .|.......+ +.......-.+....++....+.|++
T Consensus 245 Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 245 LLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred HHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 9887 56666665544 4443333334444 666665443 1211111111 11111222334445666777777766
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHH----HHhcC--------------CCChhHH--HHHHHHHHhcCChHHHHHHHHHh
Q 036165 383 GDLHVRSALVDMYAKCGFISEARTL----FDKMS--------------ERNTVTW--NSMIFGCANHGYCDEAIELFNQM 442 (566)
Q Consensus 383 ~~~~~~~~l~~~~~~~g~~~~A~~~----~~~~~--------------~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~ 442 (566)
+ ++..+...|-.-...+-..++ ...+. .|....| -.++..+-..|+++.|..+++..
T Consensus 321 ~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A 397 (700)
T KOG1156|consen 321 S---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA 397 (700)
T ss_pred c---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4 333333333322111111111 11111 1344444 44677788899999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-C----
Q 036165 443 EERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEP-D---- 517 (566)
Q Consensus 443 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~---- 517 (566)
..+.|.-..-|..=.+.+.+.|++++|..++++..+. ..+|...-..-+.-..++.+.++|.++........ +
T Consensus 398 IdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~ 475 (700)
T KOG1156|consen 398 IDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNN 475 (700)
T ss_pred hccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhh
Confidence 9876666667877788999999999999999999864 24565555466777889999999999987766222 1
Q ss_pred ----HHHHHHHH--HHHHhcCCHHHHHHHHHHHh
Q 036165 518 ----LFVWGALL--GACKNHGNIELAEIAAKHLS 545 (566)
Q Consensus 518 ----~~~~~~l~--~~~~~~g~~~~A~~~~~~~~ 545 (566)
...|-.+- .+|.+.|++..|.+-+..+.
T Consensus 476 L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 476 LAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 22343333 55778888877776665554
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.8e-09 Score=97.23 Aligned_cols=226 Identities=14% Similarity=0.033 Sum_probs=133.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCC-CcHhHHHHHHHHHHh
Q 036165 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE-GDLHVRSALVDMYAK 397 (566)
Q Consensus 319 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 397 (566)
..+.+++...|+++.++. ++.... .|.......+...+...++-+.+..-++........ .+..+......++..
T Consensus 39 ~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~ 114 (290)
T PF04733_consen 39 FYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFH 114 (290)
T ss_dssp HHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 334455555555543332 222222 444444444444333333333333333222222212 233333344456667
Q ss_pred cCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHH----hccCChHHHHHHH
Q 036165 398 CGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTAC----CHVGLVELGQRLF 473 (566)
Q Consensus 398 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~a~~~~ 473 (566)
.|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+.. .| .+...+..++ ...+.+.+|..+|
T Consensus 115 ~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~-eD-~~l~qLa~awv~l~~g~e~~~~A~y~f 190 (290)
T PF04733_consen 115 EGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID-ED-SILTQLAEAWVNLATGGEKYQDAFYIF 190 (290)
T ss_dssp CCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS-CC-HHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred cCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-Cc-HHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 78888888887765 456666677788888888888888888887642 22 3333333333 2234688888888
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhCCC
Q 036165 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNI-ELAEIAAKHLSELEPE 550 (566)
Q Consensus 474 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~p~ 550 (566)
+++.++ ..+++.+.+.+..++...|++++|.+++++.. .+.++.++..++-+....|+. +.+.+.+.++...+|+
T Consensus 191 ~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 191 EELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 888763 56778888888888888899999988888876 224566777777777777776 6777888888888887
Q ss_pred CchH
Q 036165 551 SAAN 554 (566)
Q Consensus 551 ~~~~ 554 (566)
.+-.
T Consensus 269 h~~~ 272 (290)
T PF04733_consen 269 HPLV 272 (290)
T ss_dssp SHHH
T ss_pred ChHH
Confidence 7543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.7e-08 Score=83.04 Aligned_cols=200 Identities=12% Similarity=0.024 Sum_probs=164.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh
Q 036165 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397 (566)
Q Consensus 318 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 397 (566)
...|.-.|...|+...|..-+++.++.. +.+..++..+...|.+.|..+.|.+.|+++++..+. +..+.|...-.+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 4456667888999999999999888874 455667888888888999999999999998887654 77888999999999
Q ss_pred cCCHHHHHHHHHhcCC-CC----hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHH
Q 036165 398 CGFISEARTLFDKMSE-RN----TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRL 472 (566)
Q Consensus 398 ~g~~~~A~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 472 (566)
.|++++|...|++... |+ ..+|..+.-+..+.|+.+.|.+.|++..+..+....+...+.....+.|++-.|...
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 9999999999998875 32 457888888888999999999999999998888888999999999999999999999
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHH
Q 036165 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLFVW 521 (566)
Q Consensus 473 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~ 521 (566)
++..... + .++....-..|+.-.+.|+-+.|-+.=.... .-|....+
T Consensus 196 ~~~~~~~-~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 196 LERYQQR-G-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHhc-c-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 9999876 3 4888888888888889999888876655443 22444433
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-06 Score=89.12 Aligned_cols=429 Identities=13% Similarity=0.109 Sum_probs=243.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHHHHHhcCChH
Q 036165 82 SERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQ 161 (566)
Q Consensus 82 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 161 (566)
..+...+-+.+++..-...++..++.|. .++.++|+|...|...++-.+- .+.+ |..-=+..+.-|+..+++-
T Consensus 842 deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~--fLke----N~yYDs~vVGkYCEKRDP~ 914 (1666)
T KOG0985|consen 842 DELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPER--FLKE----NPYYDSKVVGKYCEKRDPH 914 (1666)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHH--hccc----CCcchhhHHhhhhcccCCc
Confidence 4556666778888888888999999886 6889999999999887653321 1111 1111112222233333322
Q ss_pred HHHHHHHHhHHC----CC----------------CCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCC--CchhHHHH
Q 036165 162 EAVTVFHEMHIQ----GL----------------KQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG--TDAFVVSS 219 (566)
Q Consensus 162 ~A~~~~~~m~~~----g~----------------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~ 219 (566)
-|.-.|++=.-. ++ .-|...|..++.- .-.--++++++.++.+++ .|+.-.+.
T Consensus 915 lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e-----~n~~rRqLiDqVv~tal~E~~dPe~vS~ 989 (1666)
T KOG0985|consen 915 LACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNE-----ENPYRRQLIDQVVQTALPETQDPEEVSV 989 (1666)
T ss_pred eEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhc-----cChHHHHHHHHHHHhcCCccCChHHHHH
Confidence 221111110000 00 0122223322210 011122344444444432 23344445
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-CCChh-----hHHH---------------------------HHHHHHHcCChhHHHH
Q 036165 220 LIDMYSKCGSVEKAKKVFDEMV-EKDIV-----AMNA---------------------------MVSGYVQRGLATEALN 266 (566)
Q Consensus 220 l~~~~~~~g~~~~A~~~~~~~~-~~~~~-----~~~~---------------------------li~~~~~~g~~~~a~~ 266 (566)
-+.++...+-..+-.++++++. ++++. .-|. +......++-+++|+.
T Consensus 990 tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ 1069 (1666)
T KOG0985|consen 990 TVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFA 1069 (1666)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHH
Confidence 5566666666666666666652 22111 1122 2233344455566666
Q ss_pred HHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 036165 267 LVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGF 346 (566)
Q Consensus 267 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 346 (566)
+|++.. .+....+.|+.- -++++.|.+.-++.. .+..|..+..+-.+.|...+|++-|-+
T Consensus 1070 ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyik------ 1129 (1666)
T KOG0985|consen 1070 IFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIK------ 1129 (1666)
T ss_pred HHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHh------
Confidence 665532 233333333332 345555555554432 456788888888888998888887754
Q ss_pred CCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHH
Q 036165 347 CPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGC 426 (566)
Q Consensus 347 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 426 (566)
.-|+..|..++..+.+.|.+++...++..+.+..-.|.+ -..|+-+|++.+++.+-++++. .||..-...+..-|
T Consensus 1130 adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrc 1204 (1666)
T KOG0985|consen 1130 ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRC 1204 (1666)
T ss_pred cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHH
Confidence 246677889999999999999999988888877665554 3568888999988887776543 36766667777777
Q ss_pred HhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 036165 427 ANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY 506 (566)
Q Consensus 427 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 506 (566)
...+.++.|.-+|..+ ..|..|...+...|++..|...-+++- +..+|.-+-.+|...+.+.-|.
T Consensus 1205 f~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKAn-------s~ktWK~VcfaCvd~~EFrlAQ 1269 (1666)
T KOG0985|consen 1205 FEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKAN-------STKTWKEVCFACVDKEEFRLAQ 1269 (1666)
T ss_pred hhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhcc-------chhHHHHHHHHHhchhhhhHHH
Confidence 7777777776666543 346666666677777766665544332 4455665555555554443332
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhh
Q 036165 507 EMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 507 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 564 (566)
-.=-.+ ---..-...++..|...|-+++-+.+++..+.+.--.-..+.-|+-+|++
T Consensus 1270 iCGL~i--ivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1270 ICGLNI--IVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred hcCceE--EEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 110000 01223345566666666777777777777666665566666666666654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-06 Score=85.14 Aligned_cols=73 Identities=21% Similarity=0.206 Sum_probs=53.8
Q ss_pred CCChhHHH--HHHHHHHhcCCHHHHHHHHHhcCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHH
Q 036165 483 MPRTEHYA--CMVDLLGRAGRLAEAYEMIKTMST-EPDL-FVWGALLGACKNHGNIELAEIAAKHLSELEPESAANN 555 (566)
Q Consensus 483 ~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 555 (566)
+|+...|. .++..|-+.|+++.|...++.+.. .|+. ..|..-.+.+...|+.++|...++++.+++-.|.-..
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~IN 442 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAIN 442 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHH
Confidence 45555444 567888899999999999998873 3553 3455555778888999999999999998875554444
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.6e-07 Score=80.31 Aligned_cols=312 Identities=14% Similarity=0.079 Sum_probs=180.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHH---HHHHHcCChhHHHHHHHHhhhCCCCccHHHH-HHHHHHHhc
Q 036165 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMV---SGYVQRGLATEALNLVEEIGTPRVKPNVVTW-NTLISGFSK 292 (566)
Q Consensus 217 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~ 292 (566)
.--+...+...|++.+|+..|...++-|+..|.++. ..|...|+..-|+.-+.+..+. +||-..- ..-...+.+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 344667777888999999999999888888777664 4677888888888888877764 6664322 223455678
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHH
Q 036165 293 SGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372 (566)
Q Consensus 293 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 372 (566)
.|.++.|..=|+.+++.. |+..+- ..++.+.-..++-. .....+..+...|+...++..
T Consensus 119 ~Gele~A~~DF~~vl~~~--~s~~~~---~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHE--PSNGLV---LEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred cccHHHHHHHHHHHHhcC--CCcchh---HHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhhHHHH
Confidence 899999999898888763 211110 00111100011111 112222333445555555555
Q ss_pred HHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC
Q 036165 373 HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLD 449 (566)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 449 (566)
...+++..+ .+...+..-..+|...|++..|+.-++...+ .+..++--+-..+-..|+.+.++...++..+. .||
T Consensus 178 i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl-dpd 255 (504)
T KOG0624|consen 178 ITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL-DPD 255 (504)
T ss_pred HHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc-Ccc
Confidence 555555432 2555555555666666666666554443332 34444444445555555555555555554442 222
Q ss_pred HH-H---HHHH---------HHHHhccCChHHHHHHHHHhHHhcCCCCC--h---hHHHHHHHHHHhcCCHHHHHHHHHh
Q 036165 450 HL-S---FTAV---------LTACCHVGLVELGQRLFNMMQEKYKIMPR--T---EHYACMVDLLGRAGRLAEAYEMIKT 511 (566)
Q Consensus 450 ~~-~---~~~l---------~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~---~~~~~l~~~~~~~g~~~~A~~~~~~ 511 (566)
.. . |..+ +......++|.++.+..+...+. .|. . ..+..+-.++...|++.+|++...+
T Consensus 256 HK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~e 332 (504)
T KOG0624|consen 256 HKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKE 332 (504)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHH
Confidence 22 1 1111 11223455666666666666543 333 1 2233455667777788888888777
Q ss_pred cC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHH
Q 036165 512 MS-TEPD-LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNM 556 (566)
Q Consensus 512 ~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 556 (566)
+. ..|| +.++-.-..+|.-...++.|++-|+++.+.+|+|..+..
T Consensus 333 vL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 333 VLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred HHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 76 3443 666666667777777788888888888888877765543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.4e-08 Score=94.94 Aligned_cols=198 Identities=17% Similarity=0.093 Sum_probs=143.0
Q ss_pred CchHHHHHHHHHHHHhC-CCC--cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHH
Q 036165 364 ANMRRGKEIHGCAIVMG-VEG--DLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIE 437 (566)
Q Consensus 364 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~ 437 (566)
+..+.+..-+.+++... ..| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566666666666532 122 245677888899999999999999998875 457789999999999999999999
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCC
Q 036165 438 LFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPD 517 (566)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~ 517 (566)
.|++..+..+.+..++..+..++...|++++|.+.+++..+. .|+..........+...+++++|...+++....-+
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCC
Confidence 999999877778889999999999999999999999999865 44433222222334567889999999976542212
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHh-------hhCCCCchHHHHHHHHHhhcC
Q 036165 518 LFVWGALLGACKNHGNIELAEIAAKHLS-------ELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 518 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g 566 (566)
...|. ........|+..++ ..++.+. ++.|+.+..|..||.+|.++|
T Consensus 197 ~~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g 250 (296)
T PRK11189 197 KEQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLG 250 (296)
T ss_pred ccccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCC
Confidence 22232 12223345554333 2333333 566778889999999999876
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=8e-07 Score=88.10 Aligned_cols=223 Identities=8% Similarity=0.009 Sum_probs=141.5
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC-----------CCc-chHHHHHHHH
Q 036165 87 IYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK-----------TNI-HRWIALTGAY 154 (566)
Q Consensus 87 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~-~~~~~li~~~ 154 (566)
.|..-|+.+.|-+-...+. +..+|..+.++|.+..+++-|.-.+..|.. .|. ..=....-..
T Consensus 737 fyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLA 810 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLA 810 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHH
Confidence 3445566666666555442 345778888888888888877777776654 011 1111222234
Q ss_pred HhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 036165 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234 (566)
Q Consensus 155 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 234 (566)
..-|..++|..+|++.++. ..+=..|...|.+++|.++-+.=-+..+ ..+|-.....+-..+|.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHH
Confidence 5667788888888887663 3333445567888888777654322211 223444555556667788888
Q ss_pred HHHHhcCC-----------------------CChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHh
Q 036165 235 KVFDEMVE-----------------------KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS 291 (566)
Q Consensus 235 ~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 291 (566)
+.|++... +|...|.-....+-..|+.+.|+.+|...++ |-++++..|
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C 949 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKC 949 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEe
Confidence 88876622 1444455555555667777888877776653 455667777
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 036165 292 KSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEML 342 (566)
Q Consensus 292 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 342 (566)
-.|+.++|-++-++- -|....-.+.+-|-..|++.+|..+|-+..
T Consensus 950 ~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 778888887776653 255566677888888899989888887764
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-05 Score=81.10 Aligned_cols=118 Identities=18% Similarity=0.246 Sum_probs=93.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036165 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVD 494 (566)
Q Consensus 415 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 494 (566)
....|..+..+-.+.|...+|++-|-+. .|+..|..+++.+.+.|.|++..+++..+.++ .-+|..+ ..|+-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHH
Confidence 3456888999988999999888776543 47788999999999999999999999988877 6666554 57889
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036165 495 LLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544 (566)
Q Consensus 495 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 544 (566)
+|++.++..+-.+++. -|+......+..-|...|.++.|.-+|..+
T Consensus 1175 AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred HHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHHh
Confidence 9999999988777663 567777777777777777777776666543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-07 Score=82.15 Aligned_cols=286 Identities=10% Similarity=0.028 Sum_probs=159.0
Q ss_pred HHHHHhhcCChHHHHHHhccCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHH-HHHHHcccCC
Q 036165 119 LITFYTECQNIHHARMLFDEIPKT---NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPS-VLKACGHLSD 194 (566)
Q Consensus 119 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~ 194 (566)
.+..+.+..++++|++++..-.++ +....+.+..+|-...++..|.+.++++... .|...-|.. -...+.+.+.
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACI 93 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcc
Confidence 344444555666666665544432 3344566666777777777777777776653 333333321 1223345566
Q ss_pred hhHHHHHHHHHHHcCCCCchh--HHHHHHHHHHhcCCHHHHHHHHHhcC-CCChhhHHHHHHHHHHcCChhHHHHHHHHh
Q 036165 195 IGTGEKIHSLVLKHSFGTDAF--VVSSLIDMYSKCGSVEKAKKVFDEMV-EKDIVAMNAMVSGYVQRGLATEALNLVEEI 271 (566)
Q Consensus 195 ~~~a~~~~~~~~~~g~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 271 (566)
+..|.++...|... ++.. +...-.......+|+..+..++++.. +.+..+.+...-...+.|+++.|.+-|+..
T Consensus 94 ~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaA 170 (459)
T KOG4340|consen 94 YADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAA 170 (459)
T ss_pred cHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHH
Confidence 66676666665432 1111 11111222345577777777777776 355555555555666777777777777776
Q ss_pred hhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC-------------C---------------hhhHHHHHH
Q 036165 272 GTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP-------------D---------------VVSWTSVIS 323 (566)
Q Consensus 272 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~---------------~~~~~~li~ 323 (566)
.+-+---....|+..+ +..+.|+.+.|++...+++++|+.. | +..+|.-..
T Consensus 171 lqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaA 249 (459)
T KOG4340|consen 171 LQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAA 249 (459)
T ss_pred HhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhh
Confidence 6533222344565444 3445677777777777777766443 1 122344444
Q ss_pred HHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHH
Q 036165 324 GLVHNFCNDEAFDTFKEMLSQ-GFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFIS 402 (566)
Q Consensus 324 ~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 402 (566)
.+.+.|+++.|.+-+-.|--. .-..|+.|+..+.-.= ..+++-....-+..+....+ ....+|..++-.||+..-++
T Consensus 250 Ieyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~ 327 (459)
T KOG4340|consen 250 IEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFD 327 (459)
T ss_pred hhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHh
Confidence 456677777777777666311 1234556655443221 22334444444444444433 34567777777888887777
Q ss_pred HHHHHHHhcC
Q 036165 403 EARTLFDKMS 412 (566)
Q Consensus 403 ~A~~~~~~~~ 412 (566)
.|-.++.+-.
T Consensus 328 lAADvLAEn~ 337 (459)
T KOG4340|consen 328 LAADVLAENA 337 (459)
T ss_pred HHHHHHhhCc
Confidence 7777776544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.7e-07 Score=84.43 Aligned_cols=398 Identities=14% Similarity=0.064 Sum_probs=219.2
Q ss_pred HHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHhcCC
Q 036165 151 TGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTD-AFVVSSLIDMYSKCGS 229 (566)
Q Consensus 151 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~ 229 (566)
..+....|+++.|+.+|.+...... +|...|+.=..++++.|++++|.+=-.+-++. .|+ ..-|+....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 3556778999999999999988753 48888888888999999999888776666664 454 4568888888888999
Q ss_pred HHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCChhHHH---HHHHHhhhC---CCCccHHHHHHHHHHHhcCC------
Q 036165 230 VEKAKKVFDEMVEK---DIVAMNAMVSGYVQRGLATEAL---NLVEEIGTP---RVKPNVVTWNTLISGFSKSG------ 294 (566)
Q Consensus 230 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~---~~~~~m~~~---~~~p~~~~~~~ll~~~~~~~------ 294 (566)
+++|+..|.+-.+. |...++.+..++.......+.. .++..+... ........|..++..+-+.-
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999999988554 4456677776662111111111 111111110 00011122333433332210
Q ss_pred -CHHHHHHHHHHHHH--------cCC-------CC----------------------ChhhHHHHHHHHHhcCChhHHHH
Q 036165 295 -DQVMVSKLFQLMRA--------KGV-------EP----------------------DVVSWTSVISGLVHNFCNDEAFD 336 (566)
Q Consensus 295 -~~~~a~~~~~~~~~--------~~~-------~~----------------------~~~~~~~li~~~~~~g~~~~A~~ 336 (566)
+.+...+..-.+.. .|. .| -..-...+.++..+..+++.|++
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 11111111111110 011 01 01112333444444455555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHH-------HHHHHHHHhcCCHHHHHHHHH
Q 036165 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVR-------SALVDMYAKCGFISEARTLFD 409 (566)
Q Consensus 337 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~g~~~~A~~~~~ 409 (566)
-+....+.. -+..-++....++...|.+......-...++.|-.. ..-+ ..+..+|.+.++++.|+..|.
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~-rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL-RADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH-HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 555554432 222233344444455554444444433333333221 1111 112224444455555555555
Q ss_pred hcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCH-HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh
Q 036165 410 KMSE--RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDH-LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT 486 (566)
Q Consensus 410 ~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 486 (566)
+... .+.... .+....+++.+..+...- ..|.. .-.-.-...+.+.|++..|+..+.+++.. .+-|.
T Consensus 323 kaLte~Rt~~~l-------s~lk~~Ek~~k~~e~~a~-~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da 392 (539)
T KOG0548|consen 323 KALTEHRTPDLL-------SKLKEAEKALKEAERKAY-INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDA 392 (539)
T ss_pred HHhhhhcCHHHH-------HHHHHHHHHHHHHHHHHh-hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchh
Confidence 4332 111111 111111222222111111 12221 11222356778899999999999999875 35677
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhh
Q 036165 487 EHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 487 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 564 (566)
..|....-+|.+.|.+..|++-.+... ..| ....|.-=..++....++++|.+.|++.++.+|++..+...+...+..
T Consensus 393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 393 RLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 889999999999999999988877766 233 344455445566667789999999999999999998888877776653
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-05 Score=77.50 Aligned_cols=417 Identities=11% Similarity=0.028 Sum_probs=230.3
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHH--HHHHHh--hcCChHHHHHHhccCCCCCcchHHH
Q 036165 74 FHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATK--LITFYT--ECQNIHHARMLFDEIPKTNIHRWIA 149 (566)
Q Consensus 74 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~ 149 (566)
.|-+..++..-+-+.+..+.+++|..+.+.-.. ..+.+. +=.+|+ +.+..++|.+.++.....+..+...
T Consensus 42 ~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L 115 (652)
T KOG2376|consen 42 VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEYRLNKLDEALKTLKGLDRLDDKLLEL 115 (652)
T ss_pred CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHHHcccHHHHHHHHhcccccchHHHHH
Confidence 455566777777777788888888854433211 111122 345565 5689999999999666666656667
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHCCCCCC-cchHHHHHHHHcccCChhHHHHHHHHHHHcCCCC--chhHHHHHHHHHHh
Q 036165 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQN-IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGT--DAFVVSSLIDMYSK 226 (566)
Q Consensus 150 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~l~~~~~~ 226 (566)
-...+-+.|++++|+++|+.+.+.+.+-. ...-..++.+-. .-.+. + +......| +...+-.....+..
T Consensus 116 ~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~---~q~v~~v~e~syel~yN~Ac~~i~ 187 (652)
T KOG2376|consen 116 RAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-L---LQSVPEVPEDSYELLYNTACILIE 187 (652)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-H---HHhccCCCcchHHHHHHHHHHHHh
Confidence 77888999999999999999987653311 111112222111 11111 1 22222222 22222234556778
Q ss_pred cCCHHHHHHHHHhc--------CCCCh----------hhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHH----HH
Q 036165 227 CGSVEKAKKVFDEM--------VEKDI----------VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVT----WN 284 (566)
Q Consensus 227 ~g~~~~A~~~~~~~--------~~~~~----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~----~~ 284 (566)
.|++.+|+++++.. .+.|. ..--.+..++...|+..+|..++....... .+|... -|
T Consensus 188 ~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~N 266 (652)
T KOG2376|consen 188 NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVN 266 (652)
T ss_pred cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhc
Confidence 89999999999887 22111 112335556778899999999999988765 344422 23
Q ss_pred HHHHHHhcCCCH-H-HHHHHHHHHHHcCC----------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 036165 285 TLISGFSKSGDQ-V-MVSKLFQLMRAKGV----------EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352 (566)
Q Consensus 285 ~ll~~~~~~~~~-~-~a~~~~~~~~~~~~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 352 (566)
.++. .....++ + .++..++....... .-.....|..+-.+ ..+..+.+.++....- +..|. ..
T Consensus 267 NLva-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l-~tnk~~q~r~~~a~lp--~~~p~-~~ 341 (652)
T KOG2376|consen 267 NLVA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL-FTNKMDQVRELSASLP--GMSPE-SL 341 (652)
T ss_pred chhh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHhCC--ccCch-HH
Confidence 2322 2221111 1 11112221111000 00111111111111 1222233333322221 12222 33
Q ss_pred HHHHHHHHHc-c-CchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH--------hcCC--CChhHHH
Q 036165 353 ISSILPACAS-A-ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD--------KMSE--RNTVTWN 420 (566)
Q Consensus 353 ~~~ll~~~~~-~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~--~~~~~~~ 420 (566)
+..++..+.+ . ....++.+++...-+....-...+.-..+......|+++.|.+++. .+.+ ..+.+..
T Consensus 342 ~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~ 421 (652)
T KOG2376|consen 342 FPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVG 421 (652)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHH
Confidence 3344433322 2 2356666666666655444445566677778888899999988888 3332 2334555
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhc---CCCCHHHHHH----HHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 036165 421 SMIFGCANHGYCDEAIELFNQMEER---KKLDHLSFTA----VLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV 493 (566)
Q Consensus 421 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~----l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 493 (566)
.+...+.+.++.+.|..++.+.... ..+....... +...-.+.|+-++|..+++++.+. .++|..+...++
T Consensus 422 aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~--n~~d~~~l~~lV 499 (652)
T KOG2376|consen 422 AIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF--NPNDTDLLVQLV 499 (652)
T ss_pred HHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh--CCchHHHHHHHH
Confidence 5666677777766677777666554 1222233333 333334568888888888888863 467778888888
Q ss_pred HHHHhcCCHHHHHHHHHhcC
Q 036165 494 DLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 494 ~~~~~~g~~~~A~~~~~~~~ 513 (566)
.+|++. +.+.|..+-+.+.
T Consensus 500 ~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 500 TAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HHHHhc-CHHHHHHHhhcCC
Confidence 888775 6777777766654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.7e-06 Score=81.07 Aligned_cols=191 Identities=13% Similarity=0.086 Sum_probs=99.8
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C---Ch--hHHHHHHHHHH
Q 036165 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--R---NT--VTWNSMIFGCA 427 (566)
Q Consensus 355 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~--~~~~~l~~~~~ 427 (566)
.+...+...|++++|...++...+..+. +...+..+...|...|++++|...+++..+ | +. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 4444555666666666666666655432 345556666667777777777777666553 1 11 13445566667
Q ss_pred hcCChHHHHHHHHHhhhcCC--CCHHHH-H--HHHHHHhccCChHHHHHHHHHhHHhc--CCC--CChhHHHHHHHHHHh
Q 036165 428 NHGYCDEAIELFNQMEERKK--LDHLSF-T--AVLTACCHVGLVELGQRLFNMMQEKY--KIM--PRTEHYACMVDLLGR 498 (566)
Q Consensus 428 ~~~~~~~A~~~~~~~~~~~~--~~~~~~-~--~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~--p~~~~~~~l~~~~~~ 498 (566)
..|++++|..++++.....+ +..... + .++.-+...|..+.+.+. +.+.... ..+ .........+.++..
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence 77777777777777643311 111111 1 222233333433322222 1111110 111 111222245666777
Q ss_pred cCCHHHHHHHHHhcCC--CC---C------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Q 036165 499 AGRLAEAYEMIKTMST--EP---D------LFVWGALLGACKNHGNIELAEIAAKHLSEL 547 (566)
Q Consensus 499 ~g~~~~A~~~~~~~~~--~p---~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (566)
.|+.++|...++.+.. +. . ........-++...|+.++|.+.+..++..
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888888888776651 11 1 111222224466888888898888888764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.3e-06 Score=74.97 Aligned_cols=310 Identities=10% Similarity=0.039 Sum_probs=197.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHH-HHHHHHH
Q 036165 147 WIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVS-SLIDMYS 225 (566)
Q Consensus 147 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~l~~~~~ 225 (566)
+++.+..+++..+++.|++++..-.+...+ +....+.+..+|....++..|...++++-.. .|...-|. --...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 567788888999999999999888776322 5556677777788889999999999998764 34444333 2345667
Q ss_pred hcCCHHHHHHHHHhcCCCC-hhhHHHHHH--HHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHH
Q 036165 226 KCGSVEKAKKVFDEMVEKD-IVAMNAMVS--GYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKL 302 (566)
Q Consensus 226 ~~g~~~~A~~~~~~~~~~~-~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 302 (566)
+.+.+.+|+.+...|.+.+ ...-..-+. .....+++..+..++++....| +..+.+...-...+.|+++.|.+-
T Consensus 90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHH
Confidence 7899999999999997742 222112222 3345788999999999876533 444555555566789999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHccCchHHHHHHHHHHHH
Q 036165 303 FQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI----SSILPACASAANMRRGKEIHGCAIV 378 (566)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~ 378 (566)
|....+-+--.....||.-+ +..+.|+++.|++...+.++.|++..+..- +..+. ....|+.. .+. .
T Consensus 167 FqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiD-vrsvgNt~---~lh----~ 237 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGID-VRSVGNTL---VLH----Q 237 (459)
T ss_pred HHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCc-hhcccchH---HHH----H
Confidence 99987754333456676544 566789999999999999988754322110 00000 00001100 000 0
Q ss_pred hCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHH
Q 036165 379 MGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE-----RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSF 453 (566)
Q Consensus 379 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 453 (566)
. .-+..+|.-.-.+.+.|+.+.|.+.+..|.. -|++|...+.-.- ..+++.+..+-+.-+....|-...||
T Consensus 238 S---al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETF 313 (459)
T KOG4340|consen 238 S---ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETF 313 (459)
T ss_pred H---HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHH
Confidence 0 1123455555666777888888887777763 3555554432221 23444444444444554445566777
Q ss_pred HHHHHHHhccCChHHHHHHHHH
Q 036165 454 TAVLTACCHVGLVELGQRLFNM 475 (566)
Q Consensus 454 ~~l~~~~~~~g~~~~a~~~~~~ 475 (566)
..++-.||+..-++.|..++.+
T Consensus 314 ANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHhh
Confidence 7777777777777777766654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=0.00013 Score=80.65 Aligned_cols=328 Identities=10% Similarity=-0.043 Sum_probs=192.7
Q ss_pred HHHhcCCHHHHHHHHHhcCC----CChhhHHHHHHHHHHcCChhHHHHHHHHhhhC--CC----Ccc--HHHHHHHHHHH
Q 036165 223 MYSKCGSVEKAKKVFDEMVE----KDIVAMNAMVSGYVQRGLATEALNLVEEIGTP--RV----KPN--VVTWNTLISGF 290 (566)
Q Consensus 223 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~----~p~--~~~~~~ll~~~ 290 (566)
.....|+++.+...++.+.. .+..........+...|+++++...+...... .. .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34445666666666666521 12223334444556778888888888776542 11 111 11222233445
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHH
Q 036165 291 SKSGDQVMVSKLFQLMRAKGVEPD----VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGF---CP--TSATISSILPACA 361 (566)
Q Consensus 291 ~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~--~~~~~~~ll~~~~ 361 (566)
...|+++.|...++...+.-...+ ....+.+...+...|++++|...+++.....- .+ ...+...+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 578888888888888765311111 12345555667778888888888888764211 11 1233445566777
Q ss_pred ccCchHHHHHHHHHHHHh----CCC--C-cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC------C--ChhHHHHHHHHH
Q 036165 362 SAANMRRGKEIHGCAIVM----GVE--G-DLHVRSALVDMYAKCGFISEARTLFDKMSE------R--NTVTWNSMIFGC 426 (566)
Q Consensus 362 ~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~--~~~~~~~l~~~~ 426 (566)
..|+++.|...+...... +.. + ....+..+...+...|++++|...+++... + ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 888888888887776552 211 1 122344556667777888888888776543 1 122344455566
Q ss_pred HhcCChHHHHHHHHHhhhc-CC-CCHHHHHH-----HHHHHhccCChHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHH
Q 036165 427 ANHGYCDEAIELFNQMEER-KK-LDHLSFTA-----VLTACCHVGLVELGQRLFNMMQEKYKIMPR---TEHYACMVDLL 496 (566)
Q Consensus 427 ~~~~~~~~A~~~~~~~~~~-~~-~~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~ 496 (566)
...|+.++|.+.+++.... .. .....+.. .+..+...|+.+.|...+...... ..... ...+..+..++
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHH
Confidence 7788888888888887654 11 11111111 113334577888888887665432 11111 11134566778
Q ss_pred HhcCCHHHHHHHHHhcCC-------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC
Q 036165 497 GRAGRLAEAYEMIKTMST-------EP-DLFVWGALLGACKNHGNIELAEIAAKHLSELEPES 551 (566)
Q Consensus 497 ~~~g~~~~A~~~~~~~~~-------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 551 (566)
...|++++|...+++... .. ...+...+..++.+.|+.++|...+.++++.....
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 888888888888877651 11 12345566677888889999999999988887544
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.7e-06 Score=85.38 Aligned_cols=120 Identities=12% Similarity=0.036 Sum_probs=52.6
Q ss_pred HHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc-----CC---CChhHHHHHHHHHH
Q 036165 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM-----SE---RNTVTWNSMIFGCA 427 (566)
Q Consensus 356 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~---~~~~~~~~l~~~~~ 427 (566)
+...+....+++.|...+.......+. +...+--........|+.-++..+|..- .+ ++..-|-+...-..
T Consensus 856 lgvL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~ 934 (1238)
T KOG1127|consen 856 LGVLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHL 934 (1238)
T ss_pred cceeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHH
Confidence 333344555666666666665544322 2333322222333445555555555431 11 23223333333333
Q ss_pred hcCChHHHHHHHHH----------hhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHh
Q 036165 428 NHGYCDEAIELFNQ----------MEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476 (566)
Q Consensus 428 ~~~~~~~A~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 476 (566)
.+|+.++-+...++ .....+.+...|...+...-+.+.+..|.+...+.
T Consensus 935 ~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 935 QNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred hccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44444433322222 22222334445655555555556555555555444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.1e-05 Score=77.48 Aligned_cols=345 Identities=14% Similarity=0.100 Sum_probs=187.4
Q ss_pred HHHHHHhhcCChHHHHHHhccCCCCCcc-hHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChh
Q 036165 118 KLITFYTECQNIHHARMLFDEIPKTNIH-RWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIG 196 (566)
Q Consensus 118 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 196 (566)
.-|.+|....+|++|..+-+-.-.|-.. .-.+.++++...|+-++|-++-+. +.. -.+.|+.|.+.|.+.
T Consensus 562 ~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~s--------dgd-~laaiqlyika~~p~ 632 (1636)
T KOG3616|consen 562 EAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELKES--------DGD-GLAAIQLYIKAGKPA 632 (1636)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhccc--------cCc-cHHHHHHHHHcCCch
Confidence 4577788888888888776654444221 223445555556666555543111 111 123455566666655
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh---------------------------hHH
Q 036165 197 TGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIV---------------------------AMN 249 (566)
Q Consensus 197 ~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------------------------~~~ 249 (566)
.|.+....-. .+..|..+...+..++.+..-+++|-.+|+++..++.. .-.
T Consensus 633 ~a~~~a~n~~--~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee 710 (1636)
T KOG3616|consen 633 KAARAALNDE--ELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEE 710 (1636)
T ss_pred HHHHhhcCHH--HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHH
Confidence 5443321110 12233444444444444444445555555544332211 011
Q ss_pred HHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 036165 250 AMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF 329 (566)
Q Consensus 250 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 329 (566)
.....+...|+++.|+.-|-+.. .....+.+.....++.+|..+++.+.... .-..-|..+..-|...|
T Consensus 711 ~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~ 779 (1636)
T KOG3616|consen 711 AWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKG 779 (1636)
T ss_pred HHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccch
Confidence 12222333344444443332221 11223444555666777777777666542 22334555666677777
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 036165 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD 409 (566)
Q Consensus 330 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 409 (566)
+++.|.++|-+. + .+.-.+..|.+.|+++.|.++-.+. .|+......|-+-..-+-+.|++.+|.+++-
T Consensus 780 dfe~ae~lf~e~---~------~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 780 DFEIAEELFTEA---D------LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred hHHHHHHHHHhc---c------hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 777777776543 1 2334455667777777766654443 2344455556566666667777777777777
Q ss_pred hcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHH
Q 036165 410 KMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHY 489 (566)
Q Consensus 410 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 489 (566)
.+..|+.. |..|-+.|..++.+++.++-.- ..-..|...+..-+...|++..|+.-|-+..+ |
T Consensus 849 ti~~p~~a-----iqmydk~~~~ddmirlv~k~h~--d~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~ 911 (1636)
T KOG3616|consen 849 TIGEPDKA-----IQMYDKHGLDDDMIRLVEKHHG--DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------F 911 (1636)
T ss_pred EccCchHH-----HHHHHhhCcchHHHHHHHHhCh--hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------H
Confidence 66666643 5667777777777666554321 11223566666777778888888877755532 5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhc
Q 036165 490 ACMVDLLGRAGRLAEAYEMIKTM 512 (566)
Q Consensus 490 ~~l~~~~~~~g~~~~A~~~~~~~ 512 (566)
.+-+++|...+.|++|.++-+.-
T Consensus 912 kaavnmyk~s~lw~dayriakte 934 (1636)
T KOG3616|consen 912 KAAVNMYKASELWEDAYRIAKTE 934 (1636)
T ss_pred HHHHHHhhhhhhHHHHHHHHhcc
Confidence 66677788888888888776643
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.2e-06 Score=79.86 Aligned_cols=360 Identities=18% Similarity=0.145 Sum_probs=206.6
Q ss_pred CChHHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHH
Q 036165 127 QNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVL 206 (566)
Q Consensus 127 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 206 (566)
.++.+|..+|-+-. .-...|..|..-.+|++|+.+-+- .|.+.-...-.+.++++...|+-+.|-++-
T Consensus 545 kkfk~ae~ifleqn-----~te~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk---- 612 (1636)
T KOG3616|consen 545 KKFKEAEMIFLEQN-----ATEEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAELK---- 612 (1636)
T ss_pred hhhhHHHHHHHhcc-----cHHHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhhc----
Confidence 35666666653211 112345555555666766665432 232222222234455555666655554431
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc--CCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHH
Q 036165 207 KHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM--VEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWN 284 (566)
Q Consensus 207 ~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 284 (566)
..+... -+.|..|.+.|.+.+|......- ...|......+..++.+..-+++|-++|+++.. |+
T Consensus 613 ----~sdgd~-laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d----~d----- 678 (1636)
T KOG3616|consen 613 ----ESDGDG-LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD----FD----- 678 (1636)
T ss_pred ----cccCcc-HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----HH-----
Confidence 112222 34678899999988877654322 234555555566666666666666666665542 11
Q ss_pred HHHHHHhcCCCHHHHHHHHHHH----------------HHcCC-CC------ChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 036165 285 TLISGFSKSGDQVMVSKLFQLM----------------RAKGV-EP------DVVSWTSVISGLVHNFCNDEAFDTFKEM 341 (566)
Q Consensus 285 ~ll~~~~~~~~~~~a~~~~~~~----------------~~~~~-~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m 341 (566)
..+..+-+..-+.+|.++-+-. ...|. .. .....-..+.+....+.+.+|+.+++.+
T Consensus 679 kale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildni 758 (1636)
T KOG3616|consen 679 KALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNI 758 (1636)
T ss_pred HHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHh
Confidence 1111111111122222221111 00000 00 0011122344556678888899998888
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--hhHH
Q 036165 342 LSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN--TVTW 419 (566)
Q Consensus 342 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~ 419 (566)
..+. .-..-|..+...|++.|+++.|+++|-+. ..++..+.+|.+.|+|+.|.++-.+...|. +..|
T Consensus 759 qdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~y 827 (1636)
T KOG3616|consen 759 QDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLY 827 (1636)
T ss_pred hhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHH
Confidence 7653 22334667788899999999999888653 245678899999999999999988888764 3456
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 036165 420 NSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA 499 (566)
Q Consensus 420 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 499 (566)
-+-..-.-.+|++.+|.++|-.+. .|+. .|..|-+.|..+..+++.++--. ..-..|-..+..-|...
T Consensus 828 iakaedldehgkf~eaeqlyiti~---~p~~-----aiqmydk~~~~ddmirlv~k~h~----d~l~dt~~~f~~e~e~~ 895 (1636)
T KOG3616|consen 828 IAKAEDLDEHGKFAEAEQLYITIG---EPDK-----AIQMYDKHGLDDDMIRLVEKHHG----DHLHDTHKHFAKELEAE 895 (1636)
T ss_pred HHhHHhHHhhcchhhhhheeEEcc---CchH-----HHHHHHhhCcchHHHHHHHHhCh----hhhhHHHHHHHHHHHhc
Confidence 555666778899999988775442 3443 35667788888888777654321 11234566777888888
Q ss_pred CCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036165 500 GRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541 (566)
Q Consensus 500 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 541 (566)
|++.+|..-|-+.. -|.+-.+.|..++-+++|.++.
T Consensus 896 g~lkaae~~flea~------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 896 GDLKAAEEHFLEAG------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred cChhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHHHH
Confidence 99998888877664 3444444555555555544433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.4e-06 Score=81.16 Aligned_cols=444 Identities=12% Similarity=0.106 Sum_probs=216.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHhC--------CCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHH
Q 036165 78 PAAYSERIEIYIRDRALQSGKILHAQLIVSG--------LARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIA 149 (566)
Q Consensus 78 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 149 (566)
...|..+.+.|.+.++++-|+..+..|.... ...+...-....-.-...|.+++|..++.+-.+ |..
T Consensus 757 ~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DL 831 (1416)
T KOG3617|consen 757 DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR-----YDL 831 (1416)
T ss_pred hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHH
Confidence 3568899999999999888887777665331 111112222222333455777777777765543 334
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHH----------HHcC---------C
Q 036165 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLV----------LKHS---------F 210 (566)
Q Consensus 150 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----------~~~g---------~ 210 (566)
|=..|-.+|.+++|.++-+.=.+.-. ..||..-...+-..++.+.|.+.|++. ++.. -
T Consensus 832 lNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~ 908 (1416)
T KOG3617|consen 832 LNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRR 908 (1416)
T ss_pred HHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHh
Confidence 44555566777777766544322111 123333333344445555555555442 1111 0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC------------------------CChhhHHHHHHHHHHcCChhHHHH
Q 036165 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE------------------------KDIVAMNAMVSGYVQRGLATEALN 266 (566)
Q Consensus 211 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~~~~li~~~~~~g~~~~a~~ 266 (566)
..|...|.--....-..|+.+.|+.+|....+ .|......+.+.|-..|++.+|..
T Consensus 909 ~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~ 988 (1416)
T KOG3617|consen 909 KRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVK 988 (1416)
T ss_pred ccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHH
Confidence 12334444455555567777777777776521 144455566666777777777777
Q ss_pred HHHHhhhCCCCccHHHHHHHHHHHhcCC---------------CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 036165 267 LVEEIGTPRVKPNVVTWNTLISGFSKSG---------------DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331 (566)
Q Consensus 267 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~---------------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 331 (566)
.|.+... |...|+.|-..+ +.-.|.+.|++.- . -+...+..|-+.|.+
T Consensus 989 FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g---~-----~~~~AVmLYHkAGm~ 1051 (1416)
T KOG3617|consen 989 FFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELG---G-----YAHKAVMLYHKAGMI 1051 (1416)
T ss_pred HHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc---h-----hhhHHHHHHHhhcch
Confidence 6665532 222332222211 1222222332211 0 011122346667777
Q ss_pred hHHHHHHHH--------HHHCCC--CCCHHHHHHHHHHHHccCchHHHHHHHHHHHH----------hCC----------
Q 036165 332 DEAFDTFKE--------MLSQGF--CPTSATISSILPACASAANMRRGKEIHGCAIV----------MGV---------- 381 (566)
Q Consensus 332 ~~A~~~~~~--------m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----------~~~---------- 381 (566)
.+|+++--+ ++...+ ..|+..++....-++...++++|..++-...+ .++
T Consensus 1052 ~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~m 1131 (1416)
T KOG3617|consen 1052 GKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELM 1131 (1416)
T ss_pred HHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhc
Confidence 766654211 122222 23455566666666666777766655433221 111
Q ss_pred ------CCc----HhHHHHHHHHHHhcCCHHHHHHHHHhcCCC------------------------ChhHHHHHHHHHH
Q 036165 382 ------EGD----LHVRSALVDMYAKCGFISEARTLFDKMSER------------------------NTVTWNSMIFGCA 427 (566)
Q Consensus 382 ------~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------------~~~~~~~l~~~~~ 427 (566)
.|+ ..+...+.+.+.++|.+..|-+-|...-++ ... ..+|..-|.
T Consensus 1132 Tp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkE-iYImAANyL 1210 (1416)
T KOG3617|consen 1132 TPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKE-IYIMAANYL 1210 (1416)
T ss_pred CcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEeeccccce-eeeehhhhh
Confidence 111 234455666777777777776666543220 000 011222223
Q ss_pred hcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHh---c------------cCChHHHHHHHHHhHHhcCCCCChhHHHHH
Q 036165 428 NHGYCDEAIELFNQMEERKKLDHLSFTAVLTACC---H------------VGLVELGQRLFNMMQEKYKIMPRTEHYACM 492 (566)
Q Consensus 428 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~---~------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 492 (566)
+.=+|..--++++.+.... .-...+..|.+.|. . .|-.++|-+.+.++..+ . .....++.|
T Consensus 1211 QtlDWq~~pq~mK~I~tFY-TKgqafd~LanFY~~cAqiEiee~q~ydKa~gAl~eA~kCl~ka~~k-~--~~~t~l~~L 1286 (1416)
T KOG3617|consen 1211 QTLDWQDNPQTMKDIETFY-TKGQAFDHLANFYKSCAQIEIEELQTYDKAMGALEEAAKCLLKAEQK-N--MSTTGLDAL 1286 (1416)
T ss_pred hhcccccChHHHhhhHhhh-hcchhHHHHHHHHHHHHHhhHHHHhhhhHHhHHHHHHHHHHHHHHhh-c--chHHHHHHH
Confidence 3222322222222222210 01112222322221 1 23334444555555443 2 122223333
Q ss_pred HHHHHhc-----------CCHHHHHHHHHhcCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC
Q 036165 493 VDLLGRA-----------GRLAEAYEMIKTMSTEPD-------LFVWGALLGACKNHGNIELAEIAAKHLSELEPES 551 (566)
Q Consensus 493 ~~~~~~~-----------g~~~~A~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 551 (566)
-.-.... .+..+...-.+.+..+|+ ...|..|+..+....++..|-+.++.+....|+-
T Consensus 1287 q~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~ 1363 (1416)
T KOG3617|consen 1287 QEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPNV 1363 (1416)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCcc
Confidence 2222211 133333444445554443 3467888899999999999999999999887753
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.3e-07 Score=79.76 Aligned_cols=161 Identities=11% Similarity=0.082 Sum_probs=124.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHH
Q 036165 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQ 470 (566)
Q Consensus 391 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 470 (566)
-+..|.+.|+++.+....+.+..+.. .+...++.+++...+++..+..+.|...|..+...+...|++++|.
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPLH--------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCccc--------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45567888888877655544333210 1223566788888888888888889999999999999999999999
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHH-HhcCC--HHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036165 471 RLFNMMQEKYKIMPRTEHYACMVDLL-GRAGR--LAEAYEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAEIAAKHLS 545 (566)
Q Consensus 471 ~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 545 (566)
..+++.... .+.+...+..+..++ .+.|+ .++|.+++++.. ..| +..++..+...+.+.|++++|+..|++++
T Consensus 94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999865 234677888888864 67777 599999999988 334 67888888899999999999999999999
Q ss_pred hhCCCCchHHHHHHHH
Q 036165 546 ELEPESAANNMLLTDL 561 (566)
Q Consensus 546 ~~~p~~~~~~~~l~~~ 561 (566)
+..|.+..-+..+..|
T Consensus 172 ~l~~~~~~r~~~i~~i 187 (198)
T PRK10370 172 DLNSPRVNRTQLVESI 187 (198)
T ss_pred hhCCCCccHHHHHHHH
Confidence 9888777666555443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.9e-05 Score=85.75 Aligned_cols=359 Identities=10% Similarity=-0.025 Sum_probs=212.9
Q ss_pred HHHhhcCChHHHHHHhccCCCCCcc--hHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHH
Q 036165 121 TFYTECQNIHHARMLFDEIPKTNIH--RWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTG 198 (566)
Q Consensus 121 ~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 198 (566)
..+...|++.+|............. ........+...|++..+...++.+.......+..........+...|+++++
T Consensus 349 ~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a 428 (903)
T PRK04841 349 EAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEV 428 (903)
T ss_pred HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHH
Confidence 3344445555554444433332111 11122234455677777777766653221111222223334445567888998
Q ss_pred HHHHHHHHHcCC------CCc--hhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCh----hhHHHHHHHHHHcCChh
Q 036165 199 EKIHSLVLKHSF------GTD--AFVVSSLIDMYSKCGSVEKAKKVFDEMVE----KDI----VAMNAMVSGYVQRGLAT 262 (566)
Q Consensus 199 ~~~~~~~~~~g~------~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~g~~~ 262 (566)
...++.....-- .+. ......+...+...|++++|...+++... .+. ...+.+...+...|+++
T Consensus 429 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~ 508 (903)
T PRK04841 429 NTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELA 508 (903)
T ss_pred HHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHH
Confidence 888887754311 111 12223344556678999999988887632 121 23455666777889999
Q ss_pred HHHHHHHHhhhC----CC-CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCC--C-ChhhHHHHHHHHHhcCC
Q 036165 263 EALNLVEEIGTP----RV-KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK----GVE--P-DVVSWTSVISGLVHNFC 330 (566)
Q Consensus 263 ~a~~~~~~m~~~----~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~ 330 (566)
+|...+.+.... |- .....++..+...+...|+++.|...+++.... +.. + ....+..+...+...|+
T Consensus 509 ~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~ 588 (903)
T PRK04841 509 RALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWAR 588 (903)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcC
Confidence 999888887532 11 111234555667778899999999988876542 211 1 12234455566777899
Q ss_pred hhHHHHHHHHHHHCC--CCCC--HHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCC--cHh----HHHHHHHHHHhcCC
Q 036165 331 NDEAFDTFKEMLSQG--FCPT--SATISSILPACASAANMRRGKEIHGCAIVMGVEG--DLH----VRSALVDMYAKCGF 400 (566)
Q Consensus 331 ~~~A~~~~~~m~~~~--~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~----~~~~l~~~~~~~g~ 400 (566)
+++|...+++..... ..+. ...+..+.......|+.+.|...+.......... ... .....+..+...|+
T Consensus 589 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 668 (903)
T PRK04841 589 LDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGD 668 (903)
T ss_pred HHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCC
Confidence 999998888875431 1121 2334445567778899999988888775531111 110 01112244556788
Q ss_pred HHHHHHHHHhcCCCC---h----hHHHHHHHHHHhcCChHHHHHHHHHhhhc---C-CC--CHHHHHHHHHHHhccCChH
Q 036165 401 ISEARTLFDKMSERN---T----VTWNSMIFGCANHGYCDEAIELFNQMEER---K-KL--DHLSFTAVLTACCHVGLVE 467 (566)
Q Consensus 401 ~~~A~~~~~~~~~~~---~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~-~~--~~~~~~~l~~~~~~~g~~~ 467 (566)
.+.|...+.....+. . ..+..+..++...|++++|...+++.... . .+ ...+...+..++...|+.+
T Consensus 669 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~ 748 (903)
T PRK04841 669 KEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKS 748 (903)
T ss_pred HHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHH
Confidence 999988887665421 1 11345566777889999999998887764 1 11 1235666777888999999
Q ss_pred HHHHHHHHhHHh
Q 036165 468 LGQRLFNMMQEK 479 (566)
Q Consensus 468 ~a~~~~~~~~~~ 479 (566)
+|...+.++.+.
T Consensus 749 ~A~~~L~~Al~l 760 (903)
T PRK04841 749 EAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHH
Confidence 999999888875
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-05 Score=78.60 Aligned_cols=254 Identities=13% Similarity=0.031 Sum_probs=133.4
Q ss_pred HHHHcCChhHHHHHHHHhhhCCCCccHHHHHH---HHHHHhcCCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcC
Q 036165 254 GYVQRGLATEALNLVEEIGTPRVKPNVVTWNT---LISGFSKSGDQVMVSKLFQLMRAKGVEPD-VVSWTSVISGLVHNF 329 (566)
Q Consensus 254 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g 329 (566)
.+...|++++|.+.+++..+.. +.+...+.. ........+..+.+.+.+.. ..+..|+ ......+...+...|
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcC
Confidence 3445566666666666655432 222222221 11111123333444443333 1111222 223334445666677
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCC-Cc--HhHHHHHHHHHHhcCCHHHHHH
Q 036165 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE-GD--LHVRSALVDMYAKCGFISEART 406 (566)
Q Consensus 330 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~--~~~~~~l~~~~~~~g~~~~A~~ 406 (566)
++++|...+++..+.. +.+...+..+..++...|++++|...+....+.... ++ ...+..+...+...|++++|..
T Consensus 129 ~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 129 QYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 7777777777776653 333455566666677777777777777766654321 22 2234467778888888888888
Q ss_pred HHHhcCC--CChhHHH------HHHHHHHhcCChHHHHHHHHHhhhc---C-CC--CHHHHHHHHHHHhccCChHHHHHH
Q 036165 407 LFDKMSE--RNTVTWN------SMIFGCANHGYCDEAIELFNQMEER---K-KL--DHLSFTAVLTACCHVGLVELGQRL 472 (566)
Q Consensus 407 ~~~~~~~--~~~~~~~------~l~~~~~~~~~~~~A~~~~~~~~~~---~-~~--~~~~~~~l~~~~~~~g~~~~a~~~ 472 (566)
++++... +....+. .++.-+...|....+.++ +.+... . +. ..........++...|+.++|..+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 8887653 2111111 112222333433322222 111111 1 11 112223566677889999999999
Q ss_pred HHHhHHhcCCCC--------ChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 473 FNMMQEKYKIMP--------RTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 473 ~~~~~~~~~~~p--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
++.+... ...+ .....-....++.+.|++++|.+.+....
T Consensus 287 L~~l~~~-~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al 334 (355)
T cd05804 287 LAALKGR-ASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVR 334 (355)
T ss_pred HHHHHHH-HhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9988764 2110 11222233445678999999999988764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.87 E-value=2e-07 Score=85.90 Aligned_cols=120 Identities=13% Similarity=0.038 Sum_probs=53.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCc-cHHHHHHHHHHHhcCCCH
Q 036165 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP-NVVTWNTLISGFSKSGDQ 296 (566)
Q Consensus 218 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~ 296 (566)
..+.+++...|+.+.++.-...-..|.......+...+...++-+.++.-+++....+..+ +..........+...|++
T Consensus 39 ~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~ 118 (290)
T PF04733_consen 39 FYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDY 118 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHH
T ss_pred HHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCH
Confidence 3345555555555544433333333343344333333332233444444444433332222 222222222344555666
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036165 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLS 343 (566)
Q Consensus 297 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 343 (566)
+.|+++++.. .+.......+.+|.+.++++.|.+.++.|.+
T Consensus 119 ~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 119 EEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666555431 2344455555666666666666666666654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.4e-05 Score=79.73 Aligned_cols=461 Identities=13% Similarity=0.042 Sum_probs=271.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC---CCcchHHHHHHHHHhcCCh
Q 036165 84 RIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK---TNIHRWIALTGAYARRGYH 160 (566)
Q Consensus 84 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 160 (566)
.+..|.+.+ ...+...+-+.++.... -...|..|-..|....+...|.+.|+..-+ .+..++......|++..++
T Consensus 465 ~a~~~~rK~-~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~w 542 (1238)
T KOG1127|consen 465 VALGCMRKN-SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTW 542 (1238)
T ss_pred HHHHHhhhh-HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccH
Confidence 344444433 33444444444443321 224688888999888888899999987765 4677899999999999999
Q ss_pred HHHHHHHHHhHHCC-CCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 036165 161 QEAVTVFHEMHIQG-LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDE 239 (566)
Q Consensus 161 ~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 239 (566)
+.|..+.-..-+.. ...-...|....-.+...++...+..-++...+.. +.|...|..+..+|.++|++..|.++|.+
T Consensus 543 e~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~k 621 (1238)
T KOG1127|consen 543 EEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTK 621 (1238)
T ss_pred HHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhh
Confidence 99998843332221 00011123334444667788889999998888764 55778899999999999999999999988
Q ss_pred cCCCChhh-HH--HHHHHHHHcCChhHHHHHHHHhhhC------CCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--
Q 036165 240 MVEKDIVA-MN--AMVSGYVQRGLATEALNLVEEIGTP------RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRA-- 308 (566)
Q Consensus 240 ~~~~~~~~-~~--~li~~~~~~g~~~~a~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-- 308 (566)
...-++.. |. -.....+..|++.+|+..+...... +..--..++..+...+.-.|=..++..+++..++
T Consensus 622 As~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f 701 (1238)
T KOG1127|consen 622 ASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESF 701 (1238)
T ss_pred hHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 85443332 22 2233456789999999988876532 1111223333333333334444444444443332
Q ss_pred -----cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCch---H---HHHHHHHHHH
Q 036165 309 -----KGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANM---R---RGKEIHGCAI 377 (566)
Q Consensus 309 -----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~ 377 (566)
.....+...|-.+ ..|...|-+.. .. .|+......+..-.-..+.. | .+.+.+-.-.
T Consensus 702 ~~~l~h~~~~~~~~Wi~a----------sdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl 769 (1238)
T KOG1127|consen 702 IVSLIHSLQSDRLQWIVA----------SDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL 769 (1238)
T ss_pred HHHHHHhhhhhHHHHHHH----------hHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH
Confidence 2112222222222 22333333332 11 23333222222212222222 1 1111111111
Q ss_pred HhCCCCcHhHHHHHHHHHHh----c----CCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 036165 378 VMGVEGDLHVRSALVDMYAK----C----GFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERK 446 (566)
Q Consensus 378 ~~~~~~~~~~~~~l~~~~~~----~----g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 446 (566)
+. ..++..+..++..|.+ + .+...|+..+.+..+ .+...|+.|.-. ...|++.-|..-|-+-....
T Consensus 770 sl--~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se 846 (1238)
T KOG1127|consen 770 SL--AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE 846 (1238)
T ss_pred HH--hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc
Confidence 11 1123333333333332 1 223467777776554 677788877655 66677877777777766667
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCCH
Q 036165 447 KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP-RTEHYACMVDLLGRAGRLAEAYEMIKTMS-------TEPDL 518 (566)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~ 518 (566)
+.+..+|..+.-.+.+..+++.|...|...+. +.| +...|-.........|+.-++..+|..-- .-|+.
T Consensus 847 p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS---LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f 923 (1238)
T KOG1127|consen 847 PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS---LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKF 923 (1238)
T ss_pred ccchhheeccceeEEecccHHHhhHHHHhhhh---cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchh
Confidence 77888999999999999999999999999885 344 45556555555667788888888876521 22555
Q ss_pred HHHHHHHHHHHhcCCHHHHHH----------HHHHHhhhCCCCchHHHHHHHHHhhc
Q 036165 519 FVWGALLGACKNHGNIELAEI----------AAKHLSELEPESAANNMLLTDLYANA 565 (566)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~----------~~~~~~~~~p~~~~~~~~l~~~~~~~ 565 (566)
.-|......-...|+.++-+. .+++.++..|+...+|...+.....+
T Consensus 924 ~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL 980 (1238)
T KOG1127|consen 924 QYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHL 980 (1238)
T ss_pred hHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHH
Confidence 556555555556666555443 44555667898888888877766543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-07 Score=78.42 Aligned_cols=123 Identities=11% Similarity=-0.103 Sum_probs=101.9
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--C
Q 036165 437 ELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--T 514 (566)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 514 (566)
.++++..+. ++..+..+..++...|++++|...|+.+... -+.+...|..+..++.+.|++++|...|+++. .
T Consensus 14 ~~~~~al~~---~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV---DPETVYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 445555443 3333556778889999999999999999864 34467888999999999999999999999987 3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhh
Q 036165 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 515 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 564 (566)
+.+...+..+..++...|+.++|+..++++++..|+++..+...+++...
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 45788899999999999999999999999999999999999998887643
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-05 Score=75.86 Aligned_cols=400 Identities=11% Similarity=0.028 Sum_probs=200.0
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCC---cchHHHHHHHHHhcCChHHHH
Q 036165 88 YIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTN---IHRWIALTGAYARRGYHQEAV 164 (566)
Q Consensus 88 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~ 164 (566)
....|+++.|...|...+....+ |-..|+.-...|+..|++++|.+=-.+-.+-+ ...|+-...++.--|++++|+
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHH
Confidence 33567888888888888777644 66777777778888888887776555444422 235777777777788888888
Q ss_pred HHHHHhHHCCCCC-CcchHHHHHHHHccc---CChhHHHHHHHHHHHcC---CCCchhHHHHHHHHH----------Hhc
Q 036165 165 TVFHEMHIQGLKQ-NIFVIPSVLKACGHL---SDIGTGEKIHSLVLKHS---FGTDAFVVSSLIDMY----------SKC 227 (566)
Q Consensus 165 ~~~~~m~~~g~~p-~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~g---~~~~~~~~~~l~~~~----------~~~ 227 (566)
..|.+-.+. .| +...++.+..+.... ++.-..-.++..+.... .......|..++..+ ...
T Consensus 91 ~ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 91 LAYSEGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHHHHHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 888777664 33 333444454444100 00000000111110000 000000111111111 000
Q ss_pred CCHHHHHHHHHhcCCCChhhHHHHHHHHHHcC--------Chh----HHHHHHHHhhh-CCCCccHHHHHHHHHHHhcCC
Q 036165 228 GSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG--------LAT----EALNLVEEIGT-PRVKPNVVTWNTLISGFSKSG 294 (566)
Q Consensus 228 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g--------~~~----~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~ 294 (566)
.++..+.-.+...... .+...| ... .......++.+ ...+--..-...+.++..+..
T Consensus 169 ~r~m~a~~~l~~~~~~----------~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk 238 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDEL----------LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKK 238 (539)
T ss_pred HHHHHHHHHHhcCccc----------cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 0011111111110000 000000 000 00000000000 000001122455666666777
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CH----HHHHHHHHHHHccCchHH
Q 036165 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCP--TS----ATISSILPACASAANMRR 368 (566)
Q Consensus 295 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~----~~~~~ll~~~~~~~~~~~ 368 (566)
+++.+.+-+....+.. .+..-++....+|...|.+.+.........+.|... +. ..+..+..++.+.++++.
T Consensus 239 ~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 239 DFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred hHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 7777777777666653 455555666666777777666666665555544211 11 112223335555667777
Q ss_pred HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCh-hHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 036165 369 GKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMS--ERNT-VTWNSMIFGCANHGYCDEAIELFNQMEER 445 (566)
Q Consensus 369 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 445 (566)
+...+.+.+.....|+. ..+....+++........ .|.. .....-...+.+.|++..|+..|.+++..
T Consensus 317 ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr 387 (539)
T KOG0548|consen 317 AIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR 387 (539)
T ss_pred HHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 77777776554333222 122233444444333222 2222 11122255566777777777777777777
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
.|.|...|..-.-+|.+.|.+..|+.-.+...+. -++....|..=..++.-..++++|.+.|++..
T Consensus 388 ~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 388 DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777776666653 12233445555556666667777777777766
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.5e-05 Score=69.18 Aligned_cols=310 Identities=12% Similarity=0.046 Sum_probs=187.3
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHH---HHHcccCChhHHHHHHHHHHHcCCCCchhH-HH
Q 036165 143 NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVL---KACGHLSDIGTGEKIHSLVLKHSFGTDAFV-VS 218 (566)
Q Consensus 143 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~ 218 (566)
++.-..-+...+...|++..|+.-|....+. |+..|..+. ..|...|+-..|..=+..+++. .||-.. ..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 3444566778888888899998888887653 334444443 3466778777787777777764 565432 22
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHH
Q 036165 219 SLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVM 298 (566)
Q Consensus 219 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 298 (566)
.-...+.++|.++.|..-|+.+.+.++.- +....++.+.-..++-.. ....+..+...|+...
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQN 173 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchhh
Confidence 33456778888888888888875543210 001111111111111111 2223344556778888
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 036165 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV 378 (566)
Q Consensus 299 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 378 (566)
|.+....+++. .+-|...|..-..+|...|++..|+.-++..-+.. .-+..++..+-..+...|+.+.+.....+.++
T Consensus 174 ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 174 AIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 88888877765 23466667777788888888888887777665432 33445555666677777887777777777766
Q ss_pred hCCCCcHhH----HHHH---------HHHHHhcCCHHHHHHHHHhcCC--CCh--h---HHHHHHHHHHhcCChHHHHHH
Q 036165 379 MGVEGDLHV----RSAL---------VDMYAKCGFISEARTLFDKMSE--RNT--V---TWNSMIFGCANHGYCDEAIEL 438 (566)
Q Consensus 379 ~~~~~~~~~----~~~l---------~~~~~~~g~~~~A~~~~~~~~~--~~~--~---~~~~l~~~~~~~~~~~~A~~~ 438 (566)
.++ +... |..+ +......++|.++.+..++..+ |.. . .+..+-.++...+++.+|++.
T Consensus 252 ldp--dHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqq 329 (504)
T KOG0624|consen 252 LDP--DHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQ 329 (504)
T ss_pred cCc--chhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHH
Confidence 543 2211 1111 1222345666666666665554 221 1 233344455566777777777
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHh
Q 036165 439 FNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479 (566)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 479 (566)
..++.+..+.|..++.--..+|.-..+|+.|+.-|+.+.+.
T Consensus 330 C~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 330 CKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 77777766666777777777777777777777777777653
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.4e-07 Score=89.82 Aligned_cols=218 Identities=15% Similarity=0.110 Sum_probs=176.2
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHH
Q 036165 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392 (566)
Q Consensus 313 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 392 (566)
|-...-..+...+.+.|-...|..+|++.. .+..++.+|...|+..+|..+..+..+ -+|++..|..+.
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LG 464 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLG 464 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhh
Confidence 333344566778888999999999998863 466788889999999999999888877 457888999999
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHH
Q 036165 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRL 472 (566)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 472 (566)
+.....--+++|.++++....+- -..+.......++++++.+.|+.-.+..+....+|..+.-+..+.++++.|.+.
T Consensus 465 Dv~~d~s~yEkawElsn~~sarA---~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISARA---QRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHHH---HHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHH
Confidence 98888888999999988765431 122222233478999999999988887777888999999999999999999999
Q ss_pred HHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Q 036165 473 FNMMQEKYKIMPR-TEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSEL 547 (566)
Q Consensus 473 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (566)
|..... ..|| ...||.+-.+|.+.|+-.+|...+.++. ...+...|...+-...+.|.+++|++++.+++++
T Consensus 542 F~rcvt---L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 542 FHRCVT---LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHhh---cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 999885 3454 6889999999999999999999999887 3356677888888888999999999999999864
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2e-07 Score=89.01 Aligned_cols=221 Identities=16% Similarity=0.095 Sum_probs=145.4
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHH
Q 036165 325 LVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEA 404 (566)
Q Consensus 325 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 404 (566)
+.+.|+..+|.-.|+..+++. +-+...|..|.......++-..|+..+.++++..+. +......|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 567788888888888887764 445667777777777777777888888887776544 667777777778877877778
Q ss_pred HHHHHhcCCCC-hhHHHHHH--H-------HHHhcCChHHHHHHHHHhhhc--CCCCHHHHHHHHHHHhccCChHHHHHH
Q 036165 405 RTLFDKMSERN-TVTWNSMI--F-------GCANHGYCDEAIELFNQMEER--KKLDHLSFTAVLTACCHVGLVELGQRL 472 (566)
Q Consensus 405 ~~~~~~~~~~~-~~~~~~l~--~-------~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~ 472 (566)
.+.++.-..-. ...|...- . .+..........++|-++... ..+|+.....|.-.|--.|+++.|...
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 77776654311 11111100 0 011111233444555555444 236777777777777777777777777
Q ss_pred HHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Q 036165 473 FNMMQEKYKIMP-RTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPD-LFVWGALLGACKNHGNIELAEIAAKHLSELEP 549 (566)
Q Consensus 473 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 549 (566)
|+.+.. +.| |..+||.|.-.++...+.++|...|++++ .+|+ +.++..|.-+|...|.+++|...|=.++.+.+
T Consensus 453 f~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 453 FEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 777774 344 45677777777777777777777777776 4565 55667777777777777777777777776655
Q ss_pred C
Q 036165 550 E 550 (566)
Q Consensus 550 ~ 550 (566)
.
T Consensus 530 k 530 (579)
T KOG1125|consen 530 K 530 (579)
T ss_pred c
Confidence 4
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.9e-07 Score=80.42 Aligned_cols=60 Identities=22% Similarity=0.194 Sum_probs=49.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC
Q 036165 491 CMVDLLGRAGRLAEAYEMIKTMS-TEP----DLFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550 (566)
Q Consensus 491 ~l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 550 (566)
.+...|.+.|++++|...+++.. ..| ....+..+..++.+.|++++|...++.+....|+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45677889999999999999876 223 3568889999999999999999999988877764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.7e-06 Score=78.64 Aligned_cols=198 Identities=11% Similarity=0.074 Sum_probs=114.2
Q ss_pred CchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC-CHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCh--HHHHH
Q 036165 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG-FISEARTLFDKMSE---RNTVTWNSMIFGCANHGYC--DEAIE 437 (566)
Q Consensus 364 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~--~~A~~ 437 (566)
+..++|.....++++..+. +..+++.-..++.+.| ++++++..++++.+ .+..+|+.....+.+.|+. ++++.
T Consensus 51 e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 3444444444444443322 2334443444444444 45666666665553 3344555444444444442 55666
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc---CCH----HHHHHHHH
Q 036165 438 LFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA---GRL----AEAYEMIK 510 (566)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~A~~~~~ 510 (566)
+++++.+..+-|..+|+....++...|+++++++.++++++. . +-+...|+....++.+. |.. +++.+...
T Consensus 130 ~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 130 FTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 777777666667777777777777777777777777777764 2 23455566555554443 222 34555554
Q ss_pred hcC-CC-CCHHHHHHHHHHHHhc----CCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhh
Q 036165 511 TMS-TE-PDLFVWGALLGACKNH----GNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 511 ~~~-~~-p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 564 (566)
++. .. -|...|+.+...+... ++..+|...+.++.+.+|+++.++..|+++|..
T Consensus 208 ~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 208 DAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 444 23 3566677666666652 344567777777777777777777777777764
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.00034 Score=66.97 Aligned_cols=180 Identities=16% Similarity=0.128 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC---CHHHHHHHHHhcCC----CChhHHHHHHHHHHhcCChHHHHHHH
Q 036165 367 RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG---FISEARTLFDKMSE----RNTVTWNSMIFGCANHGYCDEAIELF 439 (566)
Q Consensus 367 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~ 439 (566)
+++..+++.....-...+..+|..+.+.-...- ..+.....+++... .-..+|...+..-.+....+.|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 444555555444322223444443333221111 24444445554443 23356888888888888899999999
Q ss_pred HHhhhc-CCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--
Q 036165 440 NQMEER-KKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE-- 515 (566)
Q Consensus 440 ~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 515 (566)
.+..+. ..+ +....++++.-+| .++.+.|.++|+.-..++|- ++.--...++.+...++-..|..+|++....
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 999988 444 5556777777555 57889999999988876443 4445567888899999999999999998733
Q ss_pred -C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Q 036165 516 -P--DLFVWGALLGACKNHGNIELAEIAAKHLSELEP 549 (566)
Q Consensus 516 -p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 549 (566)
| ....|..++.--..-|+...+.++-++.....|
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 2 357899999999999999999999999887766
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=6e-07 Score=85.86 Aligned_cols=215 Identities=12% Similarity=0.078 Sum_probs=161.5
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHH
Q 036165 289 GFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRR 368 (566)
Q Consensus 289 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 368 (566)
-+.+.|++.+|.-.|+..++.. +-+...|.-|......+++-..|+.-+++.++.. +-+...+..|...|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 4567888999988898887762 3367888888888888888889999998888753 3445667788888889998888
Q ss_pred HHHHHHHHHHhCCCCcHhHHHHHHH-----------HHHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHhcCCh
Q 036165 369 GKEIHGCAIVMGVEGDLHVRSALVD-----------MYAKCGFISEARTLFDKMSE-----RNTVTWNSMIFGCANHGYC 432 (566)
Q Consensus 369 a~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~ 432 (566)
|...+..-+...++- ..+.. .+..........++|-.+.. .|......|.-.|--.|++
T Consensus 372 Al~~L~~Wi~~~p~y-----~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKY-----VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHhCccc-----hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 988888877765431 11111 11111223444455544431 5677788888888889999
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHh
Q 036165 433 DEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT-EHYACMVDLLGRAGRLAEAYEMIKT 511 (566)
Q Consensus 433 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 511 (566)
++|.+.|+......|.|...||-|.-.++...+.++|+..|.++++ +.|+. .+...|.-.|...|.+++|.+.|-+
T Consensus 447 draiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq---LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ---LQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh---cCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 9999999999887777888999999999999999999999999984 57774 4566778888999999999888866
Q ss_pred cC
Q 036165 512 MS 513 (566)
Q Consensus 512 ~~ 513 (566)
++
T Consensus 524 AL 525 (579)
T KOG1125|consen 524 AL 525 (579)
T ss_pred HH
Confidence 54
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.1e-05 Score=71.08 Aligned_cols=225 Identities=10% Similarity=0.044 Sum_probs=128.5
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccC-chHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCH--H
Q 036165 327 HNFCNDEAFDTFKEMLSQGFCPTS-ATISSILPACASAA-NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFI--S 402 (566)
Q Consensus 327 ~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~ 402 (566)
..++.++|+.++.++++. .|+. ..+..-..++...| +++++...++.+.+..++ +..+++....++.+.|+. +
T Consensus 49 ~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 49 SDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred cCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhH
Confidence 345556666666666553 2333 23333333344444 456666666666655443 444455444444444442 4
Q ss_pred HHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhcc---CCh----HHHHHH
Q 036165 403 EARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHV---GLV----ELGQRL 472 (566)
Q Consensus 403 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~a~~~ 472 (566)
++..+++++.+ .|..+|+...-++...|+++++++.++++++..+.|...|+....++.+. |.. ++....
T Consensus 126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 55666655553 45667777777777777777777777777777666666776666555443 222 345556
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhc----CCHHHHHHHHHhcC-CC-CCHHHHHHHHHHHHhcC--------------
Q 036165 473 FNMMQEKYKIMPRTEHYACMVDLLGRA----GRLAEAYEMIKTMS-TE-PDLFVWGALLGACKNHG-------------- 532 (566)
Q Consensus 473 ~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~g-------------- 532 (566)
..+++.. .+-+...|+.+..++... ++..+|.+++.+.. .. .+......|+..|....
T Consensus 206 ~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~ 283 (320)
T PLN02789 206 TIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLA 283 (320)
T ss_pred HHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccc
Confidence 5555543 234556677777766662 34456777776654 22 34555666666665422
Q ss_pred ----CHHHHHHHHHHHhhhCCCCchHHH
Q 036165 533 ----NIELAEIAAKHLSELEPESAANNM 556 (566)
Q Consensus 533 ----~~~~A~~~~~~~~~~~p~~~~~~~ 556 (566)
..++|..+++.+-+.+|--..++.
T Consensus 284 ~~~~~~~~a~~~~~~l~~~d~ir~~yw~ 311 (320)
T PLN02789 284 EELSDSTLAQAVCSELEVADPMRRNYWA 311 (320)
T ss_pred cccccHHHHHHHHHHHHhhCcHHHHHHH
Confidence 346788888887666665444443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.5e-05 Score=78.66 Aligned_cols=210 Identities=11% Similarity=0.064 Sum_probs=171.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036165 284 NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363 (566)
Q Consensus 284 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 363 (566)
..+...+.+.|-...|..++++.. .|...|.+|...|+.++|..+..+..++ +||+.-|..+.......
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 456667778888888988888754 5677899999999999999999988873 78999999998888888
Q ss_pred CchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHH
Q 036165 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFN 440 (566)
Q Consensus 364 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~ 440 (566)
.-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+ --..+|-.+..+..+.++++.|.+.|.
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 8888888888765432 223333334457899999999987665 345688888888889999999999999
Q ss_pred HhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 441 QMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
......+.+...||.+-.+|.+.|+-.+|...+++..+. . .-+..+|...+....+.|.+++|.+.+.++.
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 988877777789999999999999999999999999876 4 3455678888888999999999999998876
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.7e-06 Score=86.45 Aligned_cols=229 Identities=15% Similarity=0.131 Sum_probs=125.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCH---HHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHH
Q 036165 314 DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ-GFCPTS---ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389 (566)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 389 (566)
+...|-..|.-....++.++|.++.++.+.. +++-.. ..|.+++..-..-|.-+...++|+++.+.. ....+|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 3455656666666666666666666666543 111111 223334443344455555566666665542 1234555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCC--CHHHHHHHHHHHhccC
Q 036165 390 ALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTACCHVG 464 (566)
Q Consensus 390 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g 464 (566)
.|...|.+.+..++|.++++.|.+ .....|...+..+.++++-+.|..++++..+..+. ......-.+..-.+.|
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 666666666666666666666664 24455666666666666666666666666655332 1223333444445666
Q ss_pred ChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-C----CCHHHHHHHHHHHHhcCCHHHHHH
Q 036165 465 LVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST-E----PDLFVWGALLGACKNHGNIELAEI 539 (566)
Q Consensus 465 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~----p~~~~~~~l~~~~~~~g~~~~A~~ 539 (566)
+.+.+..+|+..... .+-..+.|+.+++.=.+.|+.+.++.+|+++.. . .-...|...+..--.+|+-+.++.
T Consensus 1615 DaeRGRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred CchhhHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 666666666666653 233445566666666666666666666666551 1 123345555555555666555555
Q ss_pred HHHHHhh
Q 036165 540 AAKHLSE 546 (566)
Q Consensus 540 ~~~~~~~ 546 (566)
+=.++.+
T Consensus 1693 VKarA~E 1699 (1710)
T KOG1070|consen 1693 VKARAKE 1699 (1710)
T ss_pred HHHHHHH
Confidence 5555444
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.6e-06 Score=71.00 Aligned_cols=117 Identities=11% Similarity=-0.016 Sum_probs=95.2
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC
Q 036165 438 LFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TE 515 (566)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~ 515 (566)
.++++.+..+.+......+...+...|++++|...++.+... .+.+...+..+..+|.+.|++++|...+++.. .+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455555544445566778888889999999999999998875 24467888889999999999999999999876 34
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHH
Q 036165 516 PDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNM 556 (566)
Q Consensus 516 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 556 (566)
.+...+..+...+...|++++|...++++++..|++.....
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 123 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSE 123 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 46788888889999999999999999999999999887443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.8e-05 Score=68.65 Aligned_cols=157 Identities=14% Similarity=0.058 Sum_probs=94.9
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcC
Q 036165 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHG 430 (566)
Q Consensus 354 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~ 430 (566)
..+-..+...|+-+....+........ ..+......++....+.|++.+|...|++... +|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 444444445555555444444433221 12444555566666667777777777766654 45666777777777777
Q ss_pred ChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 036165 431 YCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510 (566)
Q Consensus 431 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 510 (566)
+.++|..-|.+..+..+-++..++.+.-.+.-.|+++.|..++...... -.-|..+-..+..+....|++++|.++..
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 7777777777776665556666666666666677777777777666643 22255556666666667777777766665
Q ss_pred hcC
Q 036165 511 TMS 513 (566)
Q Consensus 511 ~~~ 513 (566)
.-.
T Consensus 227 ~e~ 229 (257)
T COG5010 227 QEL 229 (257)
T ss_pred ccc
Confidence 443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.59 E-value=7e-05 Score=65.06 Aligned_cols=140 Identities=14% Similarity=0.111 Sum_probs=66.0
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CChhHHHHHHHHHHh----c
Q 036165 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE-RNTVTWNSMIFGCAN----H 429 (566)
Q Consensus 355 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~ 429 (566)
.-...|...+++++|.+...... +......=+..+.+..+.+-|...+++|.+ .+..+.+.|..++.+ .
T Consensus 113 ~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 113 LAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccc
Confidence 33344555555555555544311 222222223344444555555555555554 233344444444432 2
Q ss_pred CChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH
Q 036165 430 GYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502 (566)
Q Consensus 430 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 502 (566)
+...+|.-+|++|.+..+|+..+.+....++...|++++|..+++....+ ..-++.+...++.+-.-.|+.
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCC
Confidence 33555555555555555555555555555555555555555555555543 122344444444443444443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.3e-06 Score=75.31 Aligned_cols=165 Identities=11% Similarity=-0.006 Sum_probs=108.8
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-h---hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHH---HHH
Q 036165 384 DLHVRSALVDMYAKCGFISEARTLFDKMSE--RN-T---VTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHL---SFT 454 (566)
Q Consensus 384 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~ 454 (566)
....+..++..+.+.|++++|...|+++.. |+ . ..+..+..++...|++++|...++++.+..+.+.. ++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 455666777778888888888888887664 32 1 35566777788888888888888888776443332 455
Q ss_pred HHHHHHhcc--------CChHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHH
Q 036165 455 AVLTACCHV--------GLVELGQRLFNMMQEKYKIMPRT-EHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL 525 (566)
Q Consensus 455 ~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 525 (566)
.+..++... |++++|.+.++.+... .|+. ..+..+.... ...... ......+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~----~~~~~~-----------~~~~~~~a 173 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMD----YLRNRL-----------AGKELYVA 173 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHH----HHHHHH-----------HHHHHHHH
Confidence 555566544 6777888888887764 3332 2222221110 011000 01123566
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhCCCC---chHHHHHHHHHhhcC
Q 036165 526 GACKNHGNIELAEIAAKHLSELEPES---AANNMLLTDLYANAG 566 (566)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g 566 (566)
..+.+.|++++|...++++++..|++ +.++..++.+|...|
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg 217 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLG 217 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcC
Confidence 77899999999999999999987765 478899999998765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.1e-05 Score=69.93 Aligned_cols=159 Identities=15% Similarity=0.070 Sum_probs=133.7
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 036165 384 DLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTAC 460 (566)
Q Consensus 384 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 460 (566)
|..+ ..+...+...|+-+....+...... .+.......+....+.|++.+|...+++.....++|..+|+.+.-+|
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaal 144 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAAL 144 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHH
Confidence 4444 5677778888888888888877553 45556667889999999999999999999998999999999999999
Q ss_pred hccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-C-CCHHHHHHHHHHHHhcCCHHHHH
Q 036165 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST-E-PDLFVWGALLGACKNHGNIELAE 538 (566)
Q Consensus 461 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~~~~~~l~~~~~~~g~~~~A~ 538 (566)
.+.|+.++|..-|.+..+.. .-++..++.+.-.|.-.|+++.|..++..... . .|..+-..+.......|++++|+
T Consensus 145 dq~Gr~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 145 DQLGRFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred HHccChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHH
Confidence 99999999999999998752 33456688898889999999999999998773 3 37888899999999999999999
Q ss_pred HHHHHHh
Q 036165 539 IAAKHLS 545 (566)
Q Consensus 539 ~~~~~~~ 545 (566)
.+..+-+
T Consensus 223 ~i~~~e~ 229 (257)
T COG5010 223 DIAVQEL 229 (257)
T ss_pred hhccccc
Confidence 9887633
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.6e-07 Score=54.87 Aligned_cols=33 Identities=30% Similarity=0.539 Sum_probs=28.3
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 481 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
|+.||..+|+.||++|++.|+.++|.++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 788888888888888888888888888888874
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.3e-05 Score=80.98 Aligned_cols=131 Identities=10% Similarity=0.027 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 036165 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDL 495 (566)
Q Consensus 416 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 495 (566)
+..+..|.....+.|..++|+.+++...+..|.+......++.++.+.+++++|...+++.... -+-+......+..+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~ 163 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKS 163 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHH
Confidence 4445555555555566666666666655555555555555555666666666666666555542 12233444455555
Q ss_pred HHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC
Q 036165 496 LGRAGRLAEAYEMIKTMS-TEPD-LFVWGALLGACKNHGNIELAEIAAKHLSELE 548 (566)
Q Consensus 496 ~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 548 (566)
+.+.|++++|..+|+++. ..|+ ..++..+..++...|+.++|...|+++++..
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 556666666666666555 2222 4555555555556666666666666665543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.1e-05 Score=80.84 Aligned_cols=212 Identities=13% Similarity=0.138 Sum_probs=161.7
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHh-CCCC---cHhHHHHHHHHHHhcCCHHHHHHH
Q 036165 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVM-GVEG---DLHVRSALVDMYAKCGFISEARTL 407 (566)
Q Consensus 332 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~ 407 (566)
+.|.++-+..+.. +.++..|...+......++.+.|+++.++++.. ++.- -..+|.++++.-..-|.-+...++
T Consensus 1442 esaeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred cCHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 3444444444332 445566778888888899999999998888763 1211 134677788887778888888899
Q ss_pred HHhcCC-CC-hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC
Q 036165 408 FDKMSE-RN-TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR 485 (566)
Q Consensus 408 ~~~~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 485 (566)
|++..+ .| ...|..|...|.+.+..++|.++++.|.+........|..++..+.+..+-+.|..+++++.+. -|.
T Consensus 1520 FeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk 1596 (1710)
T KOG1070|consen 1520 FERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPK 1596 (1710)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cch
Confidence 988876 33 3467888888999999999999999999886667778999999999999889999999988864 333
Q ss_pred ---hhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC
Q 036165 486 ---TEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELE 548 (566)
Q Consensus 486 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 548 (566)
.....-.+..-.+.|+.+.+..+|+... .+.-...|+.+++.-.++|+.+.++.+|++++.+.
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 3445556677778899999999998877 23356789999999999999999999999988644
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.0011 Score=63.52 Aligned_cols=180 Identities=13% Similarity=0.087 Sum_probs=116.4
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---ccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHH
Q 036165 332 DEAFDTFKEMLSQGFCPTSATISSILPACA---SAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408 (566)
Q Consensus 332 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 408 (566)
+++..+++...+.-...+..+|..+...-- ..+..+....+++.++..-..--.-+|..+++.-.+..-++.|+.+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 455556665544322333333333332211 11235555566666655433223346667777777778888888888
Q ss_pred HhcCC----C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCC
Q 036165 409 DKMSE----R-NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM 483 (566)
Q Consensus 409 ~~~~~----~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 483 (566)
.+..+ + .+...++++.-||. ++.+-|.++|+--.+....++.-....+.-+...++-..+..+|++.... ++.
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~ 467 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLS 467 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCC
Confidence 88775 2 55566777766654 56778888888777766666666677777777888888888888888877 666
Q ss_pred CCh--hHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 484 PRT--EHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 484 p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
|+. .+|..+++-=..-|++..+.++-+++.
T Consensus 468 ~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 468 ADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 653 678888887778888888877766554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.2e-06 Score=68.27 Aligned_cols=104 Identities=11% Similarity=-0.022 Sum_probs=71.2
Q ss_pred HHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChh
Q 036165 408 FDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTE 487 (566)
Q Consensus 408 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 487 (566)
+++..+-++..+..+...+.+.|++++|...|+......+.+...+..+..++...|++++|...|+++... .+.++.
T Consensus 16 ~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~~ 93 (144)
T PRK15359 16 LKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHPE 93 (144)
T ss_pred HHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcH
Confidence 333333333334455666677777777777777777766667777777777777777777777777777753 334566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 488 HYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 488 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
.+..+..++.+.|++++|...|++..
T Consensus 94 a~~~lg~~l~~~g~~~eAi~~~~~Al 119 (144)
T PRK15359 94 PVYQTGVCLKMMGEPGLAREAFQTAI 119 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777777777777777777765
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.8e-05 Score=71.92 Aligned_cols=120 Identities=16% Similarity=0.094 Sum_probs=68.8
Q ss_pred HHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHH
Q 036165 426 CANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR-TEHYACMVDLLGRAGRLAE 504 (566)
Q Consensus 426 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 504 (566)
+...|+.++|+..+..+....|.|+.........+.+.++.++|.+.++++... .|+ ....-.+..+|.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCChHH
Confidence 334556666666666655555555555555555666666666666666666543 333 3444455566666666666
Q ss_pred HHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC
Q 036165 505 AYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELE 548 (566)
Q Consensus 505 A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 548 (566)
|...+++.. .+-|+..|..|..+|...|+..+|.....+.....
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~ 438 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALA 438 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhC
Confidence 666666554 22355556666666666666666666655555443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.8e-07 Score=53.77 Aligned_cols=32 Identities=41% Similarity=0.639 Sum_probs=22.3
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036165 209 SFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM 240 (566)
Q Consensus 209 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 240 (566)
|+.||..+|+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777665
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.3e-05 Score=81.86 Aligned_cols=215 Identities=11% Similarity=0.052 Sum_probs=148.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHH
Q 036165 314 DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT-ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392 (566)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 392 (566)
+...+..|+..+...+++++|.++.+...+. .|+... |..+...+.+.++.+.+..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 5778899999999999999999999977664 455433 33334455666665554443 233
Q ss_pred HHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHH
Q 036165 393 DMYAKCGFISEARTLFDKMSE--RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQ 470 (566)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 470 (566)
+......++.-...+...+.+ .+...+..+..+|-+.|+.++|..+|+++.+..+.|..+.|.+...+... ++++|+
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 333333344333333333333 23346777788888888888888888888887777888888888888888 888888
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-C---------------------CCCHHHHHHHHHHH
Q 036165 471 RLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-T---------------------EPDLFVWGALLGAC 528 (566)
Q Consensus 471 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---------------------~p~~~~~~~l~~~~ 528 (566)
+++.++... |...+++.++.++|.++. . ..-+.++.-+-..|
T Consensus 170 ~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y 233 (906)
T PRK14720 170 TYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPY 233 (906)
T ss_pred HHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 888887754 333344444444444443 1 12234455555777
Q ss_pred HhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhh
Q 036165 529 KNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 529 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 564 (566)
...++++++..+++.+++.+|.|.-+..-|+..|.+
T Consensus 234 ~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 234 KALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred hhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 888899999999999999999999998888888764
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.1e-05 Score=67.63 Aligned_cols=191 Identities=15% Similarity=0.173 Sum_probs=146.4
Q ss_pred HccCchHHHHHHHHHHHH---hC-CCCcH-hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHH-HHHHHhcCCh
Q 036165 361 ASAANMRRGKEIHGCAIV---MG-VEGDL-HVRSALVDMYAKCGFISEARTLFDKMSE--RNTVTWNSM-IFGCANHGYC 432 (566)
Q Consensus 361 ~~~~~~~~a~~~~~~~~~---~~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l-~~~~~~~~~~ 432 (566)
....+.++..+++..++. .| ..++. .++..++-+....|+.+.|..+++.+.+ |+..-...| ...+-..|++
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhch
Confidence 345578888888887764 33 33443 4566677777888999999999988775 333222222 2234467999
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036165 433 DEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512 (566)
Q Consensus 433 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 512 (566)
++|+++|+.+.+..+.|..++.-=+-..-..|+--+|++-+....+. +..|.+.|.-+.+.|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999999988888888887777777888888999999988884 7789999999999999999999999999998
Q ss_pred C-CCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhCCCCch
Q 036165 513 S-TEP-DLFVWGALLGACKNHG---NIELAEIAAKHLSELEPESAA 553 (566)
Q Consensus 513 ~-~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~~ 553 (566)
. ..| ++..+..+...+.-.| +.+.|.+.|.++++++|.+..
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~r 226 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLR 226 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHH
Confidence 7 455 5555667776654433 788999999999999995543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.4e-05 Score=64.44 Aligned_cols=199 Identities=15% Similarity=0.054 Sum_probs=151.6
Q ss_pred hcCChhHHHHHHHHHHH---CC-CCCCHHH-HHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCH
Q 036165 327 HNFCNDEAFDTFKEMLS---QG-FCPTSAT-ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFI 401 (566)
Q Consensus 327 ~~g~~~~A~~~~~~m~~---~~-~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 401 (566)
...++++.++++.+++. .| ..++..+ +..++-+....|+.+.|...++.+.+.- +.+..+-..-...+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 45678999999999874 34 5566654 6677788889999999999999988764 33555544445556678999
Q ss_pred HHHHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 036165 402 SEARTLFDKMSER---NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478 (566)
Q Consensus 402 ~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 478 (566)
++|+++++.+.+. |.+++-.-+...-..|+.-+|++-+.+..+.+..|...|.-+...|...|++++|.-.++++.-
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 9999999999863 4556666677777789888999999999999999999999999999999999999999999985
Q ss_pred hcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 036165 479 KYKIMPRTEHYACMVDLLGRAG---RLAEAYEMIKTMSTEPDLFVWGALLGACK 529 (566)
Q Consensus 479 ~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 529 (566)
. -|.++..+..+.+.+.-.| +.+-|.+.|.+.. +-++.-..++...|.
T Consensus 183 ~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al-kl~~~~~ral~GI~l 233 (289)
T KOG3060|consen 183 I--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL-KLNPKNLRALFGIYL 233 (289)
T ss_pred c--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HhChHhHHHHHHHHH
Confidence 3 2335556667777765555 5677899999887 323334444444443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.8e-05 Score=66.22 Aligned_cols=95 Identities=7% Similarity=0.031 Sum_probs=40.7
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHH-HhcCC--hHHHHHHHHHhhhcCCCCHHHHHHHH
Q 036165 384 DLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGC-ANHGY--CDEAIELFNQMEERKKLDHLSFTAVL 457 (566)
Q Consensus 384 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~-~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~ 457 (566)
+...+..+...|...|++++|...|++..+ .+...+..+..++ ...|+ .++|.+++++..+..+.+...+..+.
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA 151 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLA 151 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 344444444444444444444444443332 2233333333332 23333 24444444444444444444444444
Q ss_pred HHHhccCChHHHHHHHHHhHH
Q 036165 458 TACCHVGLVELGQRLFNMMQE 478 (566)
Q Consensus 458 ~~~~~~g~~~~a~~~~~~~~~ 478 (566)
..+...|++++|+..|+++.+
T Consensus 152 ~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 152 SDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 444444444444444444443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00015 Score=76.01 Aligned_cols=233 Identities=11% Similarity=0.090 Sum_probs=156.6
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHH-HHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHH
Q 036165 142 TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIP-SVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSL 220 (566)
Q Consensus 142 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 220 (566)
.+...|..|+..+...|++++|.++.+...+. .|+...+- .+...+.+.++.+.+..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 46668899999999999999999999977664 55544332 233345555555544444 23
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--CChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHH
Q 036165 221 IDMYSKCGSVEKAKKVFDEMVE--KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVM 298 (566)
Q Consensus 221 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 298 (566)
+.......++.-+..+...+.+ .+..++..+..+|-+.|+.++|..+++++.+.. +-|....|.+...|+.. ++++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 3333333444333333333322 234477788889999999999999999998876 55778889999898888 9999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 036165 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV 378 (566)
Q Consensus 299 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 378 (566)
|.+++.+.... +...+++..+.+++.++.... |+. ++.-..+.+.+..
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d---------------~d~f~~i~~ki~~ 215 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDD---------------FDFFLRIERKVLG 215 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--ccc---------------chHHHHHHHHHHh
Confidence 99998887765 777788899999999987753 322 2222223333333
Q ss_pred h-CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHH
Q 036165 379 M-GVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCA 427 (566)
Q Consensus 379 ~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 427 (566)
. |...-..++..+-..|.+.++++++..+++.+.+ .|.....-++.+|.
T Consensus 216 ~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 216 HREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 2 3333455666777788888888888888888775 45556666666665
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.5e-05 Score=64.56 Aligned_cols=126 Identities=13% Similarity=0.079 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC---HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC--hhHHHHH
Q 036165 418 TWNSMIFGCANHGYCDEAIELFNQMEERKKLD---HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR--TEHYACM 492 (566)
Q Consensus 418 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l 492 (566)
.|..++..+ ..++...+...++.+.+..+.+ ......+...+...|++++|...|+.+... ...|+ ......|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 344555555 4778888888888888875544 234555667888899999999999999876 42222 1234457
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036165 493 VDLLGRAGRLAEAYEMIKTMSTE-PDLFVWGALLGACKNHGNIELAEIAAKHLS 545 (566)
Q Consensus 493 ~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 545 (566)
..++...|++++|+..++..... .....+.....++.+.|+.++|...|++++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 78888999999999999876532 344556667788999999999999998764
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00017 Score=74.77 Aligned_cols=129 Identities=8% Similarity=-0.044 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHH
Q 036165 349 TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--R-NTVTWNSMIFG 425 (566)
Q Consensus 349 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~ 425 (566)
+...+..|.......|.+++|..+++.+.+..+. +......++..+.+.+++++|...+++... | +......+..+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~ 163 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKS 163 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 3444444444445555555555555554444322 334444445555555555555555555443 2 22333444444
Q ss_pred HHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 036165 426 CANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478 (566)
Q Consensus 426 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 478 (566)
+.+.|++++|..+|+++....+.+..++..+..++...|+.++|...|+...+
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555543333344555555555555555555555555544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00026 Score=61.69 Aligned_cols=155 Identities=17% Similarity=0.089 Sum_probs=75.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc----cCCh
Q 036165 391 LVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCH----VGLV 466 (566)
Q Consensus 391 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 466 (566)
-...|.+.|++++|.+...... +......=+..+.+..+.+-|.+.+++|.+ -.+..|.+.|..++.+ .+.+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~--ided~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQ--IDEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHhccchhh
Confidence 3444555566666666555522 222222223334444555556655555554 2233444444444332 3345
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcC-CHHHHHHHHHH
Q 036165 467 ELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST--EPDLFVWGALLGACKNHG-NIELAEIAAKH 543 (566)
Q Consensus 467 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~ 543 (566)
.+|.-+|++|.++ .+|++.+.+....++...|++++|..+++.... ..++.+...++-+-...| +.+...+.+.+
T Consensus 190 qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 190 QDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 5566666666542 455555566556666666666666666665552 234444444443333333 33334444555
Q ss_pred HhhhCCCC
Q 036165 544 LSELEPES 551 (566)
Q Consensus 544 ~~~~~p~~ 551 (566)
.....|+.
T Consensus 268 Lk~~~p~h 275 (299)
T KOG3081|consen 268 LKLSHPEH 275 (299)
T ss_pred HHhcCCcc
Confidence 54455544
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.4e-05 Score=74.72 Aligned_cols=125 Identities=15% Similarity=0.062 Sum_probs=104.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCh
Q 036165 387 VRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLV 466 (566)
Q Consensus 387 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 466 (566)
....|+..+...++++.|+.+|+++.+.++.....++..+...++..+|.+++++.....+.+...+......|.+.+++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 44456667777889999999999998866666677888888888899999999999877777777888888889999999
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 467 ELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 467 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
+.|.++.+++.+. .+-+..+|..|+.+|.+.|++++|+..++.++
T Consensus 251 ~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999864 23345699999999999999999999998776
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0002 Score=67.85 Aligned_cols=146 Identities=16% Similarity=-0.010 Sum_probs=121.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChH
Q 036165 391 LVDMYAKCGFISEARTLFDKMSE--R-NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVE 467 (566)
Q Consensus 391 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 467 (566)
....+...|++++|+..++.+.. | |+..+......+...++.++|.+.++++....+........+..++.+.|++.
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 34445677899999999998774 4 56666677788999999999999999999976666778889999999999999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Q 036165 468 LGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSEL 547 (566)
Q Consensus 468 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (566)
+|+.+++.... ..+-|+..|..|..+|...|+..+|....- .++...|+++.|+..+..+.+.
T Consensus 392 eai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~A---------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 392 EAIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARA---------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHH---------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 99999999886 456788999999999999999988876654 4478899999999999999875
Q ss_pred C-CCCch
Q 036165 548 E-PESAA 553 (566)
Q Consensus 548 ~-p~~~~ 553 (566)
. ++.++
T Consensus 455 ~~~~~~~ 461 (484)
T COG4783 455 VKLGFPD 461 (484)
T ss_pred ccCCcHH
Confidence 4 44433
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.9e-05 Score=61.83 Aligned_cols=107 Identities=14% Similarity=0.088 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC----HHHHHHH
Q 036165 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP-RTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPD----LFVWGAL 524 (566)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l 524 (566)
.++..++..+...|++++|.+.++.+...+.-.+ ....+..++.++.+.|++++|...++++. ..|+ ..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3566677778888899999999988886521111 13456678888999999999999998876 2343 4567788
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHH
Q 036165 525 LGACKNHGNIELAEIAAKHLSELEPESAANNML 557 (566)
Q Consensus 525 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 557 (566)
..++.+.|+.++|...++++++..|+++.....
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 888899999999999999999999988765543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.7e-05 Score=69.45 Aligned_cols=138 Identities=14% Similarity=0.206 Sum_probs=108.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHH-HhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 036165 417 VTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTA-CCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDL 495 (566)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 495 (566)
.+|..++....+.+..+.|..+|++..+....+...|...... +...++.+.|.++|+...+. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 4678888888888889999999999986555556666666665 33467777799999999986 45677889999999
Q ss_pred HHhcCCHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHH
Q 036165 496 LGRAGRLAEAYEMIKTMSTE-PD----LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNM 556 (566)
Q Consensus 496 ~~~~g~~~~A~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 556 (566)
+.+.|+.+.|..+|++.... |. ...|...+.--.+.|+.+.+..+.+++.+..|++.....
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 99999999999999998832 33 358999999999999999999999999999998765444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.5e-06 Score=50.07 Aligned_cols=35 Identities=23% Similarity=0.462 Sum_probs=31.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCc
Q 036165 145 HRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNI 179 (566)
Q Consensus 145 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 179 (566)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999988874
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.4e-05 Score=74.89 Aligned_cols=142 Identities=12% Similarity=0.007 Sum_probs=102.2
Q ss_pred CChhHHHHHHHHHHh--c---CChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhcc--------CChHHHHHHHHHhHHhc
Q 036165 414 RNTVTWNSMIFGCAN--H---GYCDEAIELFNQMEERKKLDHLSFTAVLTACCHV--------GLVELGQRLFNMMQEKY 480 (566)
Q Consensus 414 ~~~~~~~~l~~~~~~--~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~ 480 (566)
.+...|...+.+... . ++...|..+|++..+..|.+...|..+..++... ++...+.+..++.....
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~ 414 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALP 414 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcc
Confidence 566677777666443 2 2366888888888887666666666655544322 12334444444433321
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHH
Q 036165 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANN 555 (566)
Q Consensus 481 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 555 (566)
..+.++..|..+.-.+...|++++|...++++. ..|+...|..+...+...|+.++|...+++++.++|.+++.|
T Consensus 415 ~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~ 490 (517)
T PRK10153 415 ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLY 490 (517)
T ss_pred cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHH
Confidence 234456778888777778899999999999988 668888899999999999999999999999999999988754
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.2e-05 Score=61.49 Aligned_cols=93 Identities=13% Similarity=0.164 Sum_probs=57.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 036165 419 WNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR 498 (566)
Q Consensus 419 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 498 (566)
...+...+...|++++|...++++....+.+...+..+..++...|++++|..+++...+. .+.+...+..+..+|..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL--DPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHH
Confidence 3444555556666666666666665555556666666666666666666666666666543 23345555566666666
Q ss_pred cCCHHHHHHHHHhcC
Q 036165 499 AGRLAEAYEMIKTMS 513 (566)
Q Consensus 499 ~g~~~~A~~~~~~~~ 513 (566)
.|++++|...+++..
T Consensus 98 ~g~~~~A~~~~~~al 112 (135)
T TIGR02552 98 LGEPESALKALDLAI 112 (135)
T ss_pred cCCHHHHHHHHHHHH
Confidence 666666666666655
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.9e-05 Score=73.03 Aligned_cols=103 Identities=15% Similarity=0.054 Sum_probs=63.4
Q ss_pred HHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CC-CCHHHHHHHHHHHHhcCCHH
Q 036165 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TE-PDLFVWGALLGACKNHGNIE 535 (566)
Q Consensus 458 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~g~~~ 535 (566)
..+...|++++|+..++++++. .+-+...|..+..+|.+.|++++|...++++. .. .+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 3445556666666666666653 22344555666666666666666666666665 22 34555666666666777777
Q ss_pred HHHHHHHHHhhhCCCCchHHHHHHHHH
Q 036165 536 LAEIAAKHLSELEPESAANNMLLTDLY 562 (566)
Q Consensus 536 ~A~~~~~~~~~~~p~~~~~~~~l~~~~ 562 (566)
+|+..++++++++|+++.+...+..+.
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 777777777777777766666665553
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.4e-05 Score=69.32 Aligned_cols=98 Identities=17% Similarity=0.073 Sum_probs=47.8
Q ss_pred hccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHH
Q 036165 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAE 538 (566)
Q Consensus 461 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~ 538 (566)
.+.++|.+|+..|.++++. .+-|+..|..-..+|.+.|.++.|.+-.+..+ ..| -..+|..|..+|...|++++|+
T Consensus 92 m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 3444555555555555432 12233334444455555555555555554444 122 2334555555555555555555
Q ss_pred HHHHHHhhhCCCCchHHHHHHH
Q 036165 539 IAAKHLSELEPESAANNMLLTD 560 (566)
Q Consensus 539 ~~~~~~~~~~p~~~~~~~~l~~ 560 (566)
+.|+++++++|++.++...|..
T Consensus 170 ~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 170 EAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHhhhccCCCcHHHHHHHHH
Confidence 5555555555555555555443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.3e-06 Score=48.85 Aligned_cols=33 Identities=39% Similarity=0.551 Sum_probs=28.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhHHCCCCC
Q 036165 145 HRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQ 177 (566)
Q Consensus 145 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 177 (566)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888876
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00014 Score=62.17 Aligned_cols=125 Identities=11% Similarity=0.053 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhc-C-CCC-HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 036165 417 VTWNSMIFGCANHGYCDEAIELFNQMEER-K-KLD-HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV 493 (566)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 493 (566)
..+..+...+...|++++|...|++..+. . +++ ...+..+..++.+.|++++|...++++.+. .+-+...+..+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 34455555555566666666666665543 1 111 234555555556666666666666655543 112234444455
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhh
Q 036165 494 DLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 494 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 564 (566)
.+|...|+...+..-++... ..+++|.+.++++++.+|++ +..+...+..
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~ 163 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKT 163 (172)
T ss_pred HHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHh
Confidence 55555555444433222211 12677888888888888887 4445544443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.01 Score=55.87 Aligned_cols=415 Identities=11% Similarity=0.057 Sum_probs=240.6
Q ss_pred HHhccCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCC
Q 036165 134 MLFDEIPK--TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG 211 (566)
Q Consensus 134 ~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 211 (566)
++=+++.. .|+.+|..||.-+..+|.+++..+++++|..- .+--...|..-+++-...+++...+.+|.+.++..+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l- 107 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL- 107 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc-
Confidence 55556654 37889999999999999999999999999653 222344666667766677899999999999988754
Q ss_pred CchhHHHHHHHHHHhcCC---------HHHHHHHHHhc--CC-CChhhHHHHHHHHH---HcCCh------hHHHHHHHH
Q 036165 212 TDAFVVSSLIDMYSKCGS---------VEKAKKVFDEM--VE-KDIVAMNAMVSGYV---QRGLA------TEALNLVEE 270 (566)
Q Consensus 212 ~~~~~~~~l~~~~~~~g~---------~~~A~~~~~~~--~~-~~~~~~~~li~~~~---~~g~~------~~a~~~~~~ 270 (566)
+...|...++...+.+. +-+|.++.-.. .+ .....|+..+..+- ..|.| +.....+.+
T Consensus 108 -~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~r 186 (660)
T COG5107 108 -NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMR 186 (660)
T ss_pred -cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 46667666665544431 22232222221 12 24445666655443 23444 445556666
Q ss_pred hhhCCCCccHHH------HHHHHHHH-h------cCCCHHHHHHHHHHHHH--cCCCC----Chhh-----------HHH
Q 036165 271 IGTPRVKPNVVT------WNTLISGF-S------KSGDQVMVSKLFQLMRA--KGVEP----DVVS-----------WTS 320 (566)
Q Consensus 271 m~~~~~~p~~~~------~~~ll~~~-~------~~~~~~~a~~~~~~~~~--~~~~~----~~~~-----------~~~ 320 (566)
|...-+.-=... |..=++.. + ..--+..|...++++.. .|... +..+ |-.
T Consensus 187 al~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlN 266 (660)
T COG5107 187 ALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLN 266 (660)
T ss_pred HHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhh
Confidence 664321110111 11111111 0 01124456666666543 23222 1112 222
Q ss_pred HHHHHHhc-----CCh--hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 036165 321 VISGLVHN-----FCN--DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393 (566)
Q Consensus 321 li~~~~~~-----g~~--~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 393 (566)
.|.--... |++ ...--++++.... +......|---...+...++-+.|.+..... .+..+.....+..
T Consensus 267 wIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg----~~~spsL~~~lse 341 (660)
T COG5107 267 WIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERG----IEMSPSLTMFLSE 341 (660)
T ss_pred HhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhc----ccCCCchheeHHH
Confidence 22211111 111 1112223332221 2233334443444445556666665544432 2222222222233
Q ss_pred HHHhcCCHHHHHHHHHhcC---------------------------------CCChhHHHHHHHHHHhcCChHHHHHHHH
Q 036165 394 MYAKCGFISEARTLFDKMS---------------------------------ERNTVTWNSMIFGCANHGYCDEAIELFN 440 (566)
Q Consensus 394 ~~~~~g~~~~A~~~~~~~~---------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 440 (566)
.|.-..+-++....|++.. ..-...|...+..-.+....+.|..+|-
T Consensus 342 ~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~ 421 (660)
T COG5107 342 YYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFI 421 (660)
T ss_pred HHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3333333333333222211 0223457777887778888999999999
Q ss_pred Hhhhc--CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC
Q 036165 441 QMEER--KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST--EP 516 (566)
Q Consensus 441 ~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p 516 (566)
+..+. ..++...+++++.-++ .|+...|-.+|+.-... ++.+...-+-.+..+.+.++-+.|..+|++... ..
T Consensus 422 k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~ 498 (660)
T COG5107 422 KLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVERLEK 498 (660)
T ss_pred HHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHH
Confidence 99887 5677788899888654 68889999999987764 333333345667788899999999999997652 22
Q ss_pred C--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHH
Q 036165 517 D--LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLT 559 (566)
Q Consensus 517 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 559 (566)
+ ...|..++.--..-|+...+..+-+++.+..|.....-+.++
T Consensus 499 ~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~S 543 (660)
T COG5107 499 TQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTS 543 (660)
T ss_pred hhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHH
Confidence 3 678999999999999999999999999999987755444443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.6e-06 Score=48.54 Aligned_cols=33 Identities=27% Similarity=0.537 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHhhhCCCCcc
Q 036165 247 AMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN 279 (566)
Q Consensus 247 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 279 (566)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 677888888888888888888888887777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.2e-05 Score=56.58 Aligned_cols=65 Identities=18% Similarity=0.220 Sum_probs=47.8
Q ss_pred HhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHH
Q 036165 497 GRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561 (566)
Q Consensus 497 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 561 (566)
.+.|++++|.+.++++. .+.+...+..++.+|.+.|++++|...++++...+|+++.++..++.|
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 45677888888887776 233677777777888888888888888888888888877777776654
|
... |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00012 Score=69.98 Aligned_cols=121 Identities=13% Similarity=0.096 Sum_probs=93.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 036165 147 WIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSK 226 (566)
Q Consensus 147 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 226 (566)
-..|+..+...++++.|+++|+++.+.. |+ ....+.+.+...++-.+|.+++.+.++.. +.+..........+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3455666777888999999999988763 44 34456677767778888888888888653 4567777777888889
Q ss_pred cCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHHcCChhHHHHHHHHhh
Q 036165 227 CGSVEKAKKVFDEMVE--K-DIVAMNAMVSGYVQRGLATEALNLVEEIG 272 (566)
Q Consensus 227 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 272 (566)
.++++.|+++.++..+ | +..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999988844 3 45589999999999999999998888775
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.8e-05 Score=54.96 Aligned_cols=61 Identities=20% Similarity=0.248 Sum_probs=51.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCc
Q 036165 492 MVDLLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESA 552 (566)
Q Consensus 492 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 552 (566)
+...+.+.|++++|.+.|+++. ..| +...|..+..++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4677889999999999999988 335 577888888999999999999999999999999885
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.99 E-value=9.1e-05 Score=55.89 Aligned_cols=95 Identities=17% Similarity=0.096 Sum_probs=59.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHh
Q 036165 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKN 530 (566)
Q Consensus 453 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~ 530 (566)
+..+...+...|++++|...++.+.+. .+.+...+..+..++...|++++|.+.+++.. ...+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 344555556666777777777666543 12233555566666666777777777776654 22334566666677777
Q ss_pred cCCHHHHHHHHHHHhhhCC
Q 036165 531 HGNIELAEIAAKHLSELEP 549 (566)
Q Consensus 531 ~g~~~~A~~~~~~~~~~~p 549 (566)
.|++++|...++++++..|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 7777777777777776665
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.2e-05 Score=47.30 Aligned_cols=33 Identities=30% Similarity=0.453 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCc
Q 036165 246 VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP 278 (566)
Q Consensus 246 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 278 (566)
.+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 456666666666666666666666666666655
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00074 Score=55.73 Aligned_cols=113 Identities=12% Similarity=0.073 Sum_probs=53.4
Q ss_pred cCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcH--hHHHHHHHHHHhcCCHH
Q 036165 328 NFCNDEAFDTFKEMLSQGFCPT---SATISSILPACASAANMRRGKEIHGCAIVMGVEGDL--HVRSALVDMYAKCGFIS 402 (566)
Q Consensus 328 ~g~~~~A~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~ 402 (566)
.++.+.+...++.+.+.. +.+ ......+...+...|++++|...|+.+......+.. .....+...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 455555555555555432 111 111222334444555555555555555554422221 12233455555666666
Q ss_pred HHHHHHHhcCCC--ChhHHHHHHHHHHhcCChHHHHHHHHH
Q 036165 403 EARTLFDKMSER--NTVTWNSMIFGCANHGYCDEAIELFNQ 441 (566)
Q Consensus 403 ~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~ 441 (566)
+|...++....+ ....+......|...|+.++|...|++
T Consensus 103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666554331 223344445555566666666665554
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.025 Score=55.65 Aligned_cols=402 Identities=11% Similarity=0.043 Sum_probs=217.1
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcc-hHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHH
Q 036165 143 NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIF-VIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLI 221 (566)
Q Consensus 143 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~ 221 (566)
+-..|+.+|.--....+.+.+..++..+... .|-.. -|......-.+.|..+.+.++|++.+.. ++-+...|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 3445666665544444556666666666643 33333 3344444446777888888888887763 666677776665
Q ss_pred HHHH-hcCCHHHHHHHHHhcCC------CChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHh---
Q 036165 222 DMYS-KCGSVEKAKKVFDEMVE------KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS--- 291 (566)
Q Consensus 222 ~~~~-~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--- 291 (566)
..+. ..|+.+.....|+.... .+...|...|..-..++++.....++++.++. |. ..|+....-|.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P~-~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---PL-HQLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---hh-hHhHHHHHHHHHHH
Confidence 5544 44677777777777633 24456777777777788888888888888752 21 11222211111
Q ss_pred cC------CCHHHHHHHHHHHHHc-CC---CCChhhHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036165 292 KS------GDQVMVSKLFQLMRAK-GV---EPDVVSWTSVISGLVH-NFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360 (566)
Q Consensus 292 ~~------~~~~~a~~~~~~~~~~-~~---~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 360 (566)
+. ...+.+.++-...... .. .+....+..-+.-... .+..+++...+.+.. ..--.++
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~~~~~~ 265 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SIHEKVY 265 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-----------HHHHHHH
Confidence 11 1222222222221110 00 0000001100000000 000111111110000 0000111
Q ss_pred HccCchHHHHHHHHHHHHh---CCC----CcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcC
Q 036165 361 ASAANMRRGKEIHGCAIVM---GVE----GDLHVRSALVDMYAKCGFISEARTLFDKMSER---NTVTWNSMIFGCANHG 430 (566)
Q Consensus 361 ~~~~~~~~a~~~~~~~~~~---~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~ 430 (566)
.........+..++.-++. .++ ++...|...+.--.+.|+.+.+.-.|++..-| -...|--.+.-....|
T Consensus 266 ~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~ 345 (577)
T KOG1258|consen 266 QKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSG 345 (577)
T ss_pred HhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcC
Confidence 1111222222223332221 111 24567788888888899999999999887753 2234444444444558
Q ss_pred ChHHHHHHHHHhhhc-CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCCHHHHH--
Q 036165 431 YCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTE-HYACMVDLLGRAGRLAEAY-- 506 (566)
Q Consensus 431 ~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~-- 506 (566)
+.+-|..++....+- .+..+.+-..-...+-..|+++.|..+++.+.+. . |+.. .-..-+....+.|..+.+.
T Consensus 346 ~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~ 422 (577)
T KOG1258|consen 346 DVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYK 422 (577)
T ss_pred chhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHH
Confidence 888888888777766 3333333333333455678999999999999886 3 5542 2223345567788888887
Q ss_pred -HHHHhcC-CCCCHHHHHHHH----H-HHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhc
Q 036165 507 -EMIKTMS-TEPDLFVWGALL----G-ACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565 (566)
Q Consensus 507 -~~~~~~~-~~p~~~~~~~l~----~-~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 565 (566)
.++.... .+-+......+. + .+.-.++.+.|..++.++.+..|++...+..+.++...+
T Consensus 423 ~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 423 NELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQ 488 (577)
T ss_pred HHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhC
Confidence 4444433 222222222222 1 234557889999999999999999999999888876543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.039 Score=56.78 Aligned_cols=216 Identities=12% Similarity=0.077 Sum_probs=117.6
Q ss_pred hcCChHHHHHHhccCCC--CCcchHHHHHHH--HHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHH
Q 036165 125 ECQNIHHARMLFDEIPK--TNIHRWIALTGA--YARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEK 200 (566)
Q Consensus 125 ~~g~~~~A~~~~~~~~~--~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 200 (566)
..+++..|.+..+++.+ ||. .|...+.+ +.+.|+.++|..+++.....+.. |..|...+-..|...++.++|..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 34566666666666544 222 23333333 34677777887777776655444 66677777777777777888888
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH----HHHHHHhcCCCChhhHHHHHHHHHHc-CCh---------hHHHH
Q 036165 201 IHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK----AKKVFDEMVEKDIVAMNAMVSGYVQR-GLA---------TEALN 266 (566)
Q Consensus 201 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~li~~~~~~-g~~---------~~a~~ 266 (566)
+|++.... .|+......+..+|.|.+++.+ |.+++...++.--.-|+. ++...+. ... .-|.+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhccCCcccccchhHHHHHH
Confidence 88777765 3556666666666776665543 455555444433333433 3333322 111 22444
Q ss_pred HHHHhhhCC-CCccHHHHHHHHHHHhcCCCHHHHHHHHHH-HHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 036165 267 LVEEIGTPR-VKPNVVTWNTLISGFSKSGDQVMVSKLFQL-MRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ 344 (566)
Q Consensus 267 ~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 344 (566)
.++.+.+.+ -.-+..-...-+..+...|.+++|.+++.. ..+.-...+...-+.-+..+...+++.+..++-.++...
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 555554433 111222222233344456667777777633 333322333444445556666667777777777777666
Q ss_pred C
Q 036165 345 G 345 (566)
Q Consensus 345 ~ 345 (566)
|
T Consensus 256 ~ 256 (932)
T KOG2053|consen 256 G 256 (932)
T ss_pred C
Confidence 4
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.045 Score=56.35 Aligned_cols=194 Identities=11% Similarity=0.030 Sum_probs=128.1
Q ss_pred hHHHHHHHHH--hcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC--CCcchHHHHHHHHH
Q 036165 80 AYSERIEIYI--RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK--TNIHRWIALTGAYA 155 (566)
Q Consensus 80 ~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~ 155 (566)
.|..+++++. +.|+.++|..+++.....+.. |..+...+...|...++.++|..++++... |+......+..+|+
T Consensus 43 ~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayv 121 (932)
T KOG2053|consen 43 LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYV 121 (932)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHH
Confidence 4566666655 578888899888877665544 778888999999999999999999999877 55555556667788
Q ss_pred hcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccC----------ChhHHHHHHHHHHHcC-CCCchhHHHHHHHHH
Q 036165 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLS----------DIGTGEKIHSLVLKHS-FGTDAFVVSSLIDMY 224 (566)
Q Consensus 156 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----------~~~~a~~~~~~~~~~g-~~~~~~~~~~l~~~~ 224 (566)
+-+++.+-.+.--+|.+ ..+-+.+.|=++++...+.- -..-|.+..+.+++.+ .-.+..=...-....
T Consensus 122 R~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL 200 (932)
T KOG2053|consen 122 REKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLIL 200 (932)
T ss_pred HHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHH
Confidence 87777654333333333 23445566656666543321 1234666666666654 112222223344556
Q ss_pred HhcCCHHHHHHHHHh-c----CCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCC
Q 036165 225 SKCGSVEKAKKVFDE-M----VEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPR 275 (566)
Q Consensus 225 ~~~g~~~~A~~~~~~-~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 275 (566)
...|++++|.+++.. . ...+...-+.-+..+...++|.+..++-.++...|
T Consensus 201 ~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 201 ELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 678899999999832 2 33344555666778888899999988888888775
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.86 E-value=5.5e-05 Score=55.68 Aligned_cols=80 Identities=18% Similarity=0.179 Sum_probs=37.6
Q ss_pred CChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036165 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEP-DLFVWGALLGACKNHGNIELAEIAAK 542 (566)
Q Consensus 464 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 542 (566)
|+++.|+.+++++.+.....++...+..+..+|.+.|++++|..++++....| +......+..+|.+.|++++|+.+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 45555555555555441111123334445555566666666666655522122 22333333455556666666665555
Q ss_pred H
Q 036165 543 H 543 (566)
Q Consensus 543 ~ 543 (566)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 4
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.84 E-value=6.4e-05 Score=52.89 Aligned_cols=65 Identities=18% Similarity=0.132 Sum_probs=53.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhCC
Q 036165 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHG-NIELAEIAAKHLSELEP 549 (566)
Q Consensus 485 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 549 (566)
++..|..+...+.+.|++++|+..|++.. .+.+...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45678888888888888999988888877 3345777888888888988 68999999999998887
|
... |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0021 Score=59.77 Aligned_cols=147 Identities=15% Similarity=0.192 Sum_probs=73.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhc-CChHHHHHHHHHhhhc-C-CCCH----HHHHHHHHHHhc
Q 036165 390 ALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANH-GYCDEAIELFNQMEER-K-KLDH----LSFTAVLTACCH 462 (566)
Q Consensus 390 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~-~-~~~~----~~~~~l~~~~~~ 462 (566)
..+..|.+.|++..|-+++ ..+...|... |++++|++.|++..+. . .... ..+..+...+.+
T Consensus 99 ~A~~~y~~~G~~~~aA~~~-----------~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 99 KAIEIYREAGRFSQAAKCL-----------KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR 167 (282)
T ss_dssp HHHHHHHHCT-HHHHHHHH-----------HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence 3444555555555554443 3344555555 6777777777776655 1 1111 235556666777
Q ss_pred cCChHHHHHHHHHhHHhcCCCC-----Ch-hHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC------CHHHHHHHHHHHH
Q 036165 463 VGLVELGQRLFNMMQEKYKIMP-----RT-EHYACMVDLLGRAGRLAEAYEMIKTMS-TEP------DLFVWGALLGACK 529 (566)
Q Consensus 463 ~g~~~~a~~~~~~~~~~~~~~p-----~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p------~~~~~~~l~~~~~ 529 (566)
.|++++|.++|+++... -... +. ..+...+-++...|+...|.+.+++.. ..| .......|+.+|-
T Consensus 168 l~~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp TT-HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 77777777777776653 2211 11 122233445566677777777777654 212 1334455666664
Q ss_pred hc--CCHHHHHHHHHHHhhhC
Q 036165 530 NH--GNIELAEIAAKHLSELE 548 (566)
Q Consensus 530 ~~--g~~~~A~~~~~~~~~~~ 548 (566)
.. ..+++|..-|+.+.+++
T Consensus 247 ~~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 247 EGDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp TT-CCCHHHHCHHHTTSS---
T ss_pred hCCHHHHHHHHHHHcccCccH
Confidence 32 24555555555555444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00014 Score=58.97 Aligned_cols=98 Identities=11% Similarity=-0.091 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHH
Q 036165 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLG 526 (566)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~ 526 (566)
+....-.+..-+...|++++|+++|+-+..- -+-+..-|-.|.-++...|++++|...|..+. ...|+..+-.+..
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 4445666777788999999999999998854 23356677889999999999999999999876 4457888899999
Q ss_pred HHHhcCCHHHHHHHHHHHhhhC
Q 036165 527 ACKNHGNIELAEIAAKHLSELE 548 (566)
Q Consensus 527 ~~~~~g~~~~A~~~~~~~~~~~ 548 (566)
++...|+.+.|++.|+.++..-
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999744
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.029 Score=52.10 Aligned_cols=223 Identities=14% Similarity=0.109 Sum_probs=113.2
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHH
Q 036165 327 HNFCNDEAFDTFKEMLSQGFCPTS--ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEA 404 (566)
Q Consensus 327 ~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 404 (566)
-.|+++.|.+-|+.|... |.. ..+..+.-...+.|..+.|+.+-+.....-.. -.....+.+...+..|+|+.|
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHH
Confidence 356677777777776542 221 12334444445666666666666665544322 234555666777777777777
Q ss_pred HHHHHhcCC-----CChhH--HHHHHHHHH---hcCChHHHHHHHHHhhhcCCCCHH-HHHHHHHHHhccCChHHHHHHH
Q 036165 405 RTLFDKMSE-----RNTVT--WNSMIFGCA---NHGYCDEAIELFNQMEERKKLDHL-SFTAVLTACCHVGLVELGQRLF 473 (566)
Q Consensus 405 ~~~~~~~~~-----~~~~~--~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~ 473 (566)
+++++.-.. +++.- -..|+.+-. -.-+...|...-.+..+. .|+.. .-..-..++.+.|+..++-.++
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL-~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL-APDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCccchHHHHHHHHHHhccchhhhhhHH
Confidence 777764432 33221 111222111 122344454444444332 33322 3344455666777777777777
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC----C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC
Q 036165 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS----T-EPDLFVWGALLGACKNHGNIELAEIAAKHLSELE 548 (566)
Q Consensus 474 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 548 (566)
+.+-+. .|.+.++...+ +.+.|+. +++-+++.. . +.+..+...+..+....|++..|...-+.+....
T Consensus 287 E~aWK~---ePHP~ia~lY~--~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~ 359 (531)
T COG3898 287 ETAWKA---EPHPDIALLYV--RARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA 359 (531)
T ss_pred HHHHhc---CCChHHHHHHH--HhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC
Confidence 776643 44444443322 3344432 222222111 1 2344555556666666677776666666666666
Q ss_pred CCCchHHHHHHHHH
Q 036165 549 PESAANNMLLTDLY 562 (566)
Q Consensus 549 p~~~~~~~~l~~~~ 562 (566)
|.. .+|.+|++|-
T Consensus 360 pre-s~~lLlAdIe 372 (531)
T COG3898 360 PRE-SAYLLLADIE 372 (531)
T ss_pred chh-hHHHHHHHHH
Confidence 644 4455555554
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00085 Score=53.20 Aligned_cols=96 Identities=14% Similarity=0.101 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC---HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-ChhHHHHHH
Q 036165 418 TWNSMIFGCANHGYCDEAIELFNQMEERKKLD---HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP-RTEHYACMV 493 (566)
Q Consensus 418 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 493 (566)
++..++..+...|++++|.+.|+++.+..+.+ ...+..+..++.+.|++++|...++.+...+.-.+ ....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 44555666667777777777777776653322 34556677777777777777777777765411111 134566666
Q ss_pred HHHHhcCCHHHHHHHHHhcC
Q 036165 494 DLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 494 ~~~~~~g~~~~A~~~~~~~~ 513 (566)
.++.+.|++++|...++++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~ 103 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVI 103 (119)
T ss_pred HHHHHhCChHHHHHHHHHHH
Confidence 77777777777777777765
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00036 Score=52.50 Aligned_cols=93 Identities=16% Similarity=0.080 Sum_probs=63.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 036165 419 WNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR 498 (566)
Q Consensus 419 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 498 (566)
+..+...+...|++++|...++++.+..+.+...+..+..++...|++++|.+.++..... .+.+...+..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHHH
Confidence 4445566666777777777777776665555566667777777777777777777777653 23334566677777777
Q ss_pred cCCHHHHHHHHHhcC
Q 036165 499 AGRLAEAYEMIKTMS 513 (566)
Q Consensus 499 ~g~~~~A~~~~~~~~ 513 (566)
.|++++|...+++..
T Consensus 81 ~~~~~~a~~~~~~~~ 95 (100)
T cd00189 81 LGKYEEALEAYEKAL 95 (100)
T ss_pred HHhHHHHHHHHHHHH
Confidence 777777777776654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00098 Score=54.08 Aligned_cols=94 Identities=12% Similarity=0.012 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc
Q 036165 386 HVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCH 462 (566)
Q Consensus 386 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 462 (566)
...-.+...+...|++++|.++|+.... .+..-|..|..++...|++++|+..|.......+.|+.++-.+..++..
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 3344455666677888888888876653 3455677777777778888888888888877767777788888888888
Q ss_pred cCChHHHHHHHHHhHHh
Q 036165 463 VGLVELGQRLFNMMQEK 479 (566)
Q Consensus 463 ~g~~~~a~~~~~~~~~~ 479 (566)
.|+.+.|.+.|+.++..
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 88888888888877765
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.75 E-value=4.1e-05 Score=43.80 Aligned_cols=31 Identities=32% Similarity=0.597 Sum_probs=24.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhHHCCC
Q 036165 145 HRWIALTGAYARRGYHQEAVTVFHEMHIQGL 175 (566)
Q Consensus 145 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 175 (566)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888877663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00016 Score=51.59 Aligned_cols=68 Identities=18% Similarity=0.134 Sum_probs=57.7
Q ss_pred HHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHH
Q 036165 493 VDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTD 560 (566)
Q Consensus 493 ~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 560 (566)
-..|.+.+++++|.++++++. .+.++..|.....++.+.|++++|.+.++++++..|+++........
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 356889999999999999987 33467778888899999999999999999999999999887766543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0089 Score=56.46 Aligned_cols=174 Identities=16% Similarity=0.077 Sum_probs=109.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-C------hhHHHHHHHHHHh---cCChHHHHHHHHHhhhc-CCCCHHHH
Q 036165 385 LHVRSALVDMYAKCGFISEARTLFDKMSER-N------TVTWNSMIFGCAN---HGYCDEAIELFNQMEER-KKLDHLSF 453 (566)
Q Consensus 385 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~-~~~~~~~~ 453 (566)
..+...++-.|....+++..+++++.+... + ...-....-++.+ .|+.++|++++..+... ..+++.+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 334445666677778888888888877752 1 1111122334445 67888888888885554 77777888
Q ss_pred HHHHHHHhc---------cCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH----HHHHHH---HhcC----
Q 036165 454 TAVLTACCH---------VGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLA----EAYEMI---KTMS---- 513 (566)
Q Consensus 454 ~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~---~~~~---- 513 (566)
..+.+.|.. ....++|+..|.+.- .+.|+...--.++..+...|... +..++- ....
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 877776532 223566777776654 34566544434444455555322 222222 1111
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHH
Q 036165 514 ---TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561 (566)
Q Consensus 514 ---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 561 (566)
...+-..+.+++.++.-.|+.++|.+.++++.+..|.....-.++.++
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ni 348 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLENI 348 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHHH
Confidence 124555667888999999999999999999999998887766666554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00047 Score=61.40 Aligned_cols=92 Identities=15% Similarity=0.122 Sum_probs=55.5
Q ss_pred HHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHH
Q 036165 395 YAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQR 471 (566)
Q Consensus 395 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 471 (566)
+.+.+++++|+..|.+..+ .|.+-|..-..+|.+.|.++.|++-.+..+...+.-..+|..|..+|...|++++|++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 3455666666666666554 3455555556666666666666666666655444444566666666666666666666
Q ss_pred HHHHhHHhcCCCCChhHH
Q 036165 472 LFNMMQEKYKIMPRTEHY 489 (566)
Q Consensus 472 ~~~~~~~~~~~~p~~~~~ 489 (566)
.|++.. .+.|+-.+|
T Consensus 171 aykKaL---eldP~Ne~~ 185 (304)
T KOG0553|consen 171 AYKKAL---ELDPDNESY 185 (304)
T ss_pred HHHhhh---ccCCCcHHH
Confidence 666665 345555544
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.69 E-value=9.6e-05 Score=46.30 Aligned_cols=42 Identities=24% Similarity=0.296 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHH
Q 036165 519 FVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTD 560 (566)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 560 (566)
.+|..+..+|...|++++|++.++++++.+|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 468889999999999999999999999999999999998875
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00063 Score=65.50 Aligned_cols=118 Identities=13% Similarity=0.133 Sum_probs=73.2
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC------ChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHH
Q 036165 210 FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK------DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTW 283 (566)
Q Consensus 210 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 283 (566)
.+.+......+++.+....+++.+..++-+.... -..|..++|+.|.+.|..++++.+++.=...|+=||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3455555666666666666666666666666321 1234456677777777777777776666666666777777
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 036165 284 NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327 (566)
Q Consensus 284 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 327 (566)
+.||..+.+.|++..|.++...|...+...+..++..-+.+|.+
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 77777777777777777766666655555555555544444433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0001 Score=54.22 Aligned_cols=79 Identities=15% Similarity=0.228 Sum_probs=58.9
Q ss_pred cCChHHHHHHHHHhhhcCC--CCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHH
Q 036165 429 HGYCDEAIELFNQMEERKK--LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP-RTEHYACMVDLLGRAGRLAEA 505 (566)
Q Consensus 429 ~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 505 (566)
.|+++.|+.+++++.+..+ ++...+..+..++.+.|++++|..+++. .+ ..+ +....-.++.+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 5788999999999988743 2455566688899999999999999988 32 223 234445668899999999999
Q ss_pred HHHHHh
Q 036165 506 YEMIKT 511 (566)
Q Consensus 506 ~~~~~~ 511 (566)
.+++++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 998876
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.65 E-value=6e-05 Score=43.10 Aligned_cols=29 Identities=31% Similarity=0.562 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHhhhCC
Q 036165 247 AMNAMVSGYVQRGLATEALNLVEEIGTPR 275 (566)
Q Consensus 247 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 275 (566)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666554
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.011 Score=48.75 Aligned_cols=95 Identities=14% Similarity=0.085 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhc-CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 036165 419 WNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLG 497 (566)
Q Consensus 419 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 497 (566)
--.|..+....|+..+|...|++.... ...|......+.++....+++..|...++.+.+-..-.-++...-.+.+.|.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la 171 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA 171 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence 333444444444445555444444444 3444444444444444444544444444444432111111222333444444
Q ss_pred hcCCHHHHHHHHHhcC
Q 036165 498 RAGRLAEAYEMIKTMS 513 (566)
Q Consensus 498 ~~g~~~~A~~~~~~~~ 513 (566)
..|++++|...|+...
T Consensus 172 a~g~~a~Aesafe~a~ 187 (251)
T COG4700 172 AQGKYADAESAFEVAI 187 (251)
T ss_pred hcCCchhHHHHHHHHH
Confidence 4444444444444443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.095 Score=52.48 Aligned_cols=62 Identities=13% Similarity=0.152 Sum_probs=36.2
Q ss_pred hhHHHHHHHH--HHhcCChHHHHHHHHHhhhc--CCCCHHHHHHHHHHHhccCChHHHHHHHHHhH
Q 036165 416 TVTWNSMIFG--CANHGYCDEAIELFNQMEER--KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477 (566)
Q Consensus 416 ~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 477 (566)
...|.-+|.+ ....|..+.|++.--.+.+- .-|....|..+.-+.+....+...-+.|-++.
T Consensus 1019 AEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1019 AEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 3445444443 34467788887765555443 55666777777666666555555555554444
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.067 Score=50.27 Aligned_cols=104 Identities=15% Similarity=0.169 Sum_probs=54.6
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHH
Q 036165 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQR 471 (566)
Q Consensus 392 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 471 (566)
+.-+...|+...|.++-.+..=|+..-|...+.+++..++|++-.++... +-.+.-|..++.+|.+.|...+|..
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~~~eA~~ 258 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGNKKEASK 258 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCCHHHHHH
Confidence 34444555556666655555545555566666666666666555543221 1233455555666666666665555
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 036165 472 LFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511 (566)
Q Consensus 472 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 511 (566)
++.++. +..-+..|.++|++.+|.+.--+
T Consensus 259 yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 259 YIPKIP-----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 554421 12344555666666665554433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0015 Score=62.95 Aligned_cols=93 Identities=11% Similarity=-0.047 Sum_probs=63.9
Q ss_pred HHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH
Q 036165 424 FGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLA 503 (566)
Q Consensus 424 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 503 (566)
..+...|++++|+..|+++.+..+.+...|..+..++...|++++|+..++++.+. -+.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCHH
Confidence 44556677777777777777766666777777777777777777777777777754 1234556667777777777777
Q ss_pred HHHHHHHhcC-CCCCH
Q 036165 504 EAYEMIKTMS-TEPDL 518 (566)
Q Consensus 504 ~A~~~~~~~~-~~p~~ 518 (566)
+|...|+++. ..|+.
T Consensus 88 eA~~~~~~al~l~P~~ 103 (356)
T PLN03088 88 TAKAALEKGASLAPGD 103 (356)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 7777777765 33443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0012 Score=56.13 Aligned_cols=100 Identities=15% Similarity=0.072 Sum_probs=57.4
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHH
Q 036165 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP--RTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGA 527 (566)
Q Consensus 452 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~ 527 (566)
.+..++..+...|++++|...++++... ...+ ...++..+..+|...|++++|...++++. ..| ...++..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l-~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRL-EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 4455555566666666666666666543 1111 12356666666666677777766666655 222 23444444444
Q ss_pred HH-------hcCCHH-------HHHHHHHHHhhhCCCCc
Q 036165 528 CK-------NHGNIE-------LAEIAAKHLSELEPESA 552 (566)
Q Consensus 528 ~~-------~~g~~~-------~A~~~~~~~~~~~p~~~ 552 (566)
+. +.|+++ +|...++++++..|++.
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 44 666655 56666667777787553
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0019 Score=58.76 Aligned_cols=102 Identities=11% Similarity=0.072 Sum_probs=77.5
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CCC----HHHHH
Q 036165 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR----TEHYACMVDLLGRAGRLAEAYEMIKTMST-EPD----LFVWG 522 (566)
Q Consensus 452 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~----~~~~~ 522 (566)
.|........+.|++++|...|+.+.+. .|+ +..+..++.+|...|++++|...|+++.. .|+ ...+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 4555554446678899999999988876 233 24667788889999999999999988872 233 55666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHH
Q 036165 523 ALLGACKNHGNIELAEIAAKHLSELEPESAANNM 556 (566)
Q Consensus 523 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 556 (566)
.++..+...|+.++|...++++++..|++.....
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 6777888999999999999999999998875543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0017 Score=60.52 Aligned_cols=121 Identities=20% Similarity=0.189 Sum_probs=78.0
Q ss_pred ChHHHHHHHHHhhhc----CCCCH--HHHHHHHHHHhcc-CChHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhc
Q 036165 431 YCDEAIELFNQMEER----KKLDH--LSFTAVLTACCHV-GLVELGQRLFNMMQEKYKIMPR----TEHYACMVDLLGRA 499 (566)
Q Consensus 431 ~~~~A~~~~~~~~~~----~~~~~--~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~ 499 (566)
++++|.+.+++..+. ..++. ..+..+...|... |++++|++.|+++.+.+..... ..++..++..+.+.
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 555555555555543 12221 2455666678777 8999999999998765432222 24566788899999
Q ss_pred CCHHHHHHHHHhcCC---C-C----CHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC
Q 036165 500 GRLAEAYEMIKTMST---E-P----DLF-VWGALLGACKNHGNIELAEIAAKHLSELEPES 551 (566)
Q Consensus 500 g~~~~A~~~~~~~~~---~-p----~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 551 (566)
|++++|.++|+++.. . + +.. .+...+-++...||...|.+.+++.....|.-
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 999999999998751 1 1 121 22333445678899999999999999888743
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0018 Score=55.18 Aligned_cols=113 Identities=19% Similarity=0.270 Sum_probs=73.6
Q ss_pred HHHHHhc--CCCChhhHHHHHHHHHHc-----CChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 036165 234 KKVFDEM--VEKDIVAMNAMVSGYVQR-----GLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM 306 (566)
Q Consensus 234 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 306 (566)
...|+.. ..++-.+|..++..|.+. |..+-....+..|.+-|+.-|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~ 111 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE 111 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH
Confidence 3455555 456777788888777753 6777788888889999999999999999888765 3221 01111111
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCc
Q 036165 307 RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365 (566)
Q Consensus 307 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 365 (566)
- . ---.+-+-|++++++|...|+.||..|+..++..+.+.+.
T Consensus 112 F--------------~---hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 F--------------M---HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred h--------------c---cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 0 0 0012335677777777777777777777777777766654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00065 Score=58.03 Aligned_cols=95 Identities=8% Similarity=-0.025 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHH
Q 036165 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR--TEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLG 526 (566)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~ 526 (566)
..+..+...+...|++++|...++++.+. ...+. ...+..+..++.+.|++++|...++++. ..| +...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKL-EEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 35666777777788888888888877754 22221 3466677777777788888877777766 233 4555666667
Q ss_pred HHHhcCCHHHHHHHHHHHhh
Q 036165 527 ACKNHGNIELAEIAAKHLSE 546 (566)
Q Consensus 527 ~~~~~g~~~~A~~~~~~~~~ 546 (566)
.+...|+...+...++.++.
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~ 134 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEA 134 (172)
T ss_pred HHHHcCChHhHhhCHHHHHH
Confidence 77777777777766666554
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0052 Score=55.24 Aligned_cols=109 Identities=14% Similarity=0.060 Sum_probs=81.4
Q ss_pred cCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhcC--CCCCHH
Q 036165 445 RKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG---RLAEAYEMIKTMS--TEPDLF 519 (566)
Q Consensus 445 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~--~~p~~~ 519 (566)
..+.|...|..|..+|...|+++.|...|....+. .++++..+..+.+++.... ...++..+++++. .+.|+.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ir 228 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIR 228 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHH
Confidence 36777888888888888888888888888888764 3445666777777665443 3457788888887 334666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHH
Q 036165 520 VWGALLGACKNHGNIELAEIAAKHLSELEPESAANN 555 (566)
Q Consensus 520 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 555 (566)
+..-|...+...|++.+|...|+.|++..|.+..-.
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 677777888888999999999999988777665433
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0022 Score=61.90 Aligned_cols=117 Identities=15% Similarity=0.126 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHhhhC--CCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 036165 246 VAMNAMVSGYVQRGLATEALNLVEEIGTP--RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323 (566)
Q Consensus 246 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 323 (566)
.....++..+....+.+++..++.+.+.. ....-..|..++++.|.+.|..+.+..++..=...|+-||..++|.||+
T Consensus 67 ~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd 146 (429)
T PF10037_consen 67 LDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMD 146 (429)
T ss_pred HHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHH
Confidence 33444444444445555555555555432 1111223334555556665555666555555555566666666666666
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036165 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362 (566)
Q Consensus 324 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 362 (566)
.+.+.|++..|.++...|..++...+..|+...+.+|.+
T Consensus 147 ~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 147 HFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 666666666666555555555544444554444444433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0011 Score=49.71 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhhCCC-CccHHHHHHHHHHHhcC
Q 036165 249 NAMVSGYVQRGLATEALNLVEEIGTPRV-KPNVVTWNTLISGFSKS 293 (566)
Q Consensus 249 ~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~ 293 (566)
...|..+...+++.....+|+.++..|+ .|+..+|+.++.+.+++
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R 74 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKR 74 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHc
Confidence 3445555566777777778887777777 77777787777776654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00062 Score=57.91 Aligned_cols=100 Identities=11% Similarity=-0.089 Sum_probs=77.2
Q ss_pred hHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 036165 466 VELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPD----LFVWGALLGACKNHGNIELAEIA 540 (566)
Q Consensus 466 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~A~~~ 540 (566)
+..+...+..+....+..-....|..++..+...|++++|...+++.. ..|+ ..+|..+...+...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344444444443221333335667888888999999999999999986 2222 35788899999999999999999
Q ss_pred HHHHhhhCCCCchHHHHHHHHHhhc
Q 036165 541 AKHLSELEPESAANNMLLTDLYANA 565 (566)
Q Consensus 541 ~~~~~~~~p~~~~~~~~l~~~~~~~ 565 (566)
++++++..|.....+..++.+|...
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~~~ 119 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICHYR 119 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 9999999999999999999999843
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0012 Score=49.51 Aligned_cols=80 Identities=9% Similarity=0.069 Sum_probs=67.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHCCC-CCCcchHHHHHHHHcccC--------ChhHHHHHHHHHHHcCCCCchhHH
Q 036165 147 WIALTGAYARRGYHQEAVTVFHEMHIQGL-KQNIFVIPSVLKACGHLS--------DIGTGEKIHSLVLKHSFGTDAFVV 217 (566)
Q Consensus 147 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~ 217 (566)
....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-....+|+.|+..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34566777778999999999999999999 999999999999876543 234567889999999999999999
Q ss_pred HHHHHHHHh
Q 036165 218 SSLIDMYSK 226 (566)
Q Consensus 218 ~~l~~~~~~ 226 (566)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.011 Score=48.89 Aligned_cols=119 Identities=10% Similarity=0.018 Sum_probs=99.2
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC---CHHHH
Q 036165 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP---DLFVW 521 (566)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~ 521 (566)
..|....-..|..+..+.|++.+|...|++...- -+.-|....-.+.++....+++.+|...+++.. ..| ++.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4567777788899999999999999999999874 456678888899999999999999999999876 222 34556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 522 GALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 522 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
..+.+.+...|++++|+..|+.++...| .+......+.++.+||
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qg 207 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQG 207 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhc
Confidence 6777899999999999999999999888 4566778888888776
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.12 Score=49.18 Aligned_cols=415 Identities=11% Similarity=0.065 Sum_probs=211.1
Q ss_pred HhhcCChHHHHHHhccCCCC---Ccch------HHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHH--Hcc
Q 036165 123 YTECQNIHHARMLFDEIPKT---NIHR------WIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKA--CGH 191 (566)
Q Consensus 123 ~~~~g~~~~A~~~~~~~~~~---~~~~------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~--~~~ 191 (566)
+.+.+++.+|.++|.++-.. +... -+.++++|..+ +.+.-...+....+. .| ...|..+..+ +-+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 44678888888888877542 2122 23455666543 344444444444432 23 3334444443 346
Q ss_pred cCChhHHHHHHHHHHHc--CCC------------CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CChhhHH
Q 036165 192 LSDIGTGEKIHSLVLKH--SFG------------TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE--------KDIVAMN 249 (566)
Q Consensus 192 ~~~~~~a~~~~~~~~~~--g~~------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~ 249 (566)
.+++++|.+.+..-.+. +.. +|...-+..++++...|++.+++.+++++.+ -+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 77788888877766554 211 1222235567777888888888888888732 3677787
Q ss_pred HHHHHHHHc--------CC-------hhHHHHHHHHhhhC------CCCccHHHHHHHHHHHhcCC--CHHHHHHHHHHH
Q 036165 250 AMVSGYVQR--------GL-------ATEALNLVEEIGTP------RVKPNVVTWNTLISGFSKSG--DQVMVSKLFQLM 306 (566)
Q Consensus 250 ~li~~~~~~--------g~-------~~~a~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~ 306 (566)
.++-.+.++ .. ++.+.-...+|... .+.|....+..++....-.. ...--.++++.-
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 755554432 11 22233333333321 23344444444444333221 222223333333
Q ss_pred HHcCCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCC
Q 036165 307 RAKGVEPDVV-SWTSVISGLVHNFCNDEAFDTFKEMLSQGFCP----TSATISSILPACASAANMRRGKEIHGCAIVMGV 381 (566)
Q Consensus 307 ~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 381 (566)
...-+.|+-. ....++..+.. +.+++..+-+.+....+.+ -..++..++....+.++...|.+.+..+....+
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp 329 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDP 329 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence 3333444322 12223333333 4555555554443322111 124577777788888888888888877765443
Q ss_pred CCcHh-----HHHHHHHHHHh----cCCHHHHHHHHHhcCCCChh---HHHHHHH---HHHhcCC-hHHHHHHHHHhhhc
Q 036165 382 EGDLH-----VRSALVDMYAK----CGFISEARTLFDKMSERNTV---TWNSMIF---GCANHGY-CDEAIELFNQMEER 445 (566)
Q Consensus 382 ~~~~~-----~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~---~~~~l~~---~~~~~~~-~~~A~~~~~~~~~~ 445 (566)
..... .-..+.+..+. ..+...-..+|+.+...|+. ...-|+. -+-+.|. -++|+++++.+.+-
T Consensus 330 ~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f 409 (549)
T PF07079_consen 330 RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF 409 (549)
T ss_pred cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 32211 00112222221 11222333444444433322 1222222 2334454 78888888888876
Q ss_pred CCCCHHHHHHHHH----HHhc---cCChHHHHHHHHHhHHhcCCCCCh----hHHHHHHHH--HHhcCCHHHHHHHHHhc
Q 036165 446 KKLDHLSFTAVLT----ACCH---VGLVELGQRLFNMMQEKYKIMPRT----EHYACMVDL--LGRAGRLAEAYEMIKTM 512 (566)
Q Consensus 446 ~~~~~~~~~~l~~----~~~~---~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~--~~~~g~~~~A~~~~~~~ 512 (566)
.+-|...-|.+.. +|.. ...+..-..+-+-+.+. |+.|-. ..-|.|.++ +...|++.++.-.-.-.
T Consensus 410 t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~-gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL 488 (549)
T PF07079_consen 410 TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEV-GLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWL 488 (549)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-CCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 5556554443332 2221 12233333333333444 776643 344555443 45678888775443322
Q ss_pred C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036165 513 S-TEPDLFVWGALLGACKNHGNIELAEIAAKHL 544 (566)
Q Consensus 513 ~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 544 (566)
. ..|++.+|.-++-+.....++++|...+..+
T Consensus 489 ~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 489 TKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 2 4688888888888888888888888777553
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.17 Score=50.69 Aligned_cols=352 Identities=15% Similarity=0.062 Sum_probs=171.3
Q ss_pred CCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHH----------HHHHhcCCHHHHHHHHHhcCCCCh
Q 036165 176 KQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLI----------DMYSKCGSVEKAKKVFDEMVEKDI 245 (566)
Q Consensus 176 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~----------~~~~~~g~~~~A~~~~~~~~~~~~ 245 (566)
.|-+..|..+.......-.++.|+..|-+... -+-......|- ..-.-.|++++|++++-++-.+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh
Confidence 46666777776666666666666665544322 11111111111 111224788888888887766664
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHhhhCCC--CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 036165 246 VAMNAMVSGYVQRGLATEALNLVEEIGTPRV--KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323 (566)
Q Consensus 246 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 323 (566)
.|..+.+.|+|-...++++.=- .+. ..-...++.+...++....+++|.+.+..-... ...+.
T Consensus 766 -----Aielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~e 830 (1189)
T KOG2041|consen 766 -----AIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIE 830 (1189)
T ss_pred -----hHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHH
Confidence 3455566677776666665311 111 111345666666666666666666666543211 12344
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHH
Q 036165 324 GLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISE 403 (566)
Q Consensus 324 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 403 (566)
++.+..++++-+.+.+. ++.+...+-.+...+.+.|.-++|.+.+-+ .+.+ .+.+..+...++|.+
T Consensus 831 cly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~p------kaAv~tCv~LnQW~~ 896 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLR---RSLP------KAAVHTCVELNQWGE 896 (1189)
T ss_pred HHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHh---ccCc------HHHHHHHHHHHHHHH
Confidence 55555555444433333 344555566666777777776666554432 1211 223455566667777
Q ss_pred HHHHHHhcCCCChhHHHH--------------HHHHHHhcCChHHHHHHHHHhhhc----CCCCHHH-HHHHHHHH----
Q 036165 404 ARTLFDKMSERNTVTWNS--------------MIFGCANHGYCDEAIELFNQMEER----KKLDHLS-FTAVLTAC---- 460 (566)
Q Consensus 404 A~~~~~~~~~~~~~~~~~--------------l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~-~~~l~~~~---- 460 (566)
|.++-++..-|.+.+.-+ -|..+.+.|+.-+|.+++.+|-+. ..|-... -..++.++
T Consensus 897 avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~ 976 (1189)
T KOG2041|consen 897 AVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVEN 976 (1189)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 777766655444333211 133344556655666666666544 1222111 11111111
Q ss_pred -----------hccCChHHHHHHHHHhHHhc--CCC------CChhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCC
Q 036165 461 -----------CHVGLVELGQRLFNMMQEKY--KIM------PRTEHYACMVDLLGRAGRLAEAYEMIKTMS----TEPD 517 (566)
Q Consensus 461 -----------~~~g~~~~a~~~~~~~~~~~--~~~------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~ 517 (566)
...|..++|..+++...-.. .+. ....++-.|..-....|..+.|+..--... .-|.
T Consensus 977 h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP 1056 (1189)
T KOG2041|consen 977 HRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPP 1056 (1189)
T ss_pred HHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCH
Confidence 12344555554443321110 000 112334445555667788888876543333 2255
Q ss_pred HHHHHHHHHHHHhc---CCHHHHHHHHHHHhhhCCCCchHHHHHH
Q 036165 518 LFVWGALLGACKNH---GNIELAEIAAKHLSELEPESAANNMLLT 559 (566)
Q Consensus 518 ~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 559 (566)
...|..+.-+-+.. |--.+|.--++..-++......-|..|+
T Consensus 1057 ~eiySllALaaca~raFGtCSKAfmkLe~~e~l~~a~kq~ye~La 1101 (1189)
T KOG2041|consen 1057 AEIYSLLALAACAVRAFGTCSKAFMKLEAFEELDDAEKQEYENLA 1101 (1189)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhCCHHHHHHHHHHH
Confidence 55665555443333 3334444444443334333333444443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0088 Score=55.44 Aligned_cols=130 Identities=15% Similarity=0.131 Sum_probs=83.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 036165 317 SWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA-CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395 (566)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 395 (566)
+|..+++..-+.+..+.|..+|++.++.+ ..+...|...... +...++.+.|..+|+..++. +..+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45666666666666777777777776432 2233444433333 33345666677777777665 334677777888888
Q ss_pred HhcCCHHHHHHHHHhcCC--C----ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCC
Q 036165 396 AKCGFISEARTLFDKMSE--R----NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL 448 (566)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 448 (566)
.+.|+.+.|+.+|++... + ....|...+.--.+.|+.+.+.++.+++.+..+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 888888888888888775 2 2347777787777888888888888888776433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0064 Score=56.55 Aligned_cols=146 Identities=12% Similarity=0.025 Sum_probs=97.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhc----C--CCCHHHHHHHHHHHhccCChHHHHHHHHHhHHh---cCC-CCChh
Q 036165 418 TWNSMIFGCANHGYCDEAIELFNQMEER----K--KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK---YKI-MPRTE 487 (566)
Q Consensus 418 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~-~p~~~ 487 (566)
.|..|...|--.|+++.|+...+.=... . ......+..+.+++.-.|+++.|.+.++..... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555666666678888887765543322 1 112346888888888899999999888765432 021 22344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh----hC-CC-Cch
Q 036165 488 HYACMVDLLGRAGRLAEAYEMIKTMS--------TEPDLFVWGALLGACKNHGNIELAEIAAKHLSE----LE-PE-SAA 553 (566)
Q Consensus 488 ~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-p~-~~~ 553 (566)
..-+|...|.-...+++|+.++.+-. .......+.+|..++...|..++|....+..++ .+ |. ..+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelT 356 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELT 356 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhh
Confidence 56678888888888899988887654 124567889999999999999999888887764 22 22 345
Q ss_pred HHHHHHHHHh
Q 036165 554 NNMLLTDLYA 563 (566)
Q Consensus 554 ~~~~l~~~~~ 563 (566)
...+|+++-.
T Consensus 357 ar~Nlsdl~~ 366 (639)
T KOG1130|consen 357 ARDNLSDLIL 366 (639)
T ss_pred hhhhhHHHHH
Confidence 5566665543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00053 Score=48.12 Aligned_cols=50 Identities=24% Similarity=0.211 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 517 DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 517 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
+..+|..+...+...|++++|+..|+++++.+|+++.++..+|.+|..+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~ 51 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG 51 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence 46789999999999999999999999999999999999999999998875
|
... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.034 Score=50.23 Aligned_cols=53 Identities=11% Similarity=-0.014 Sum_probs=23.7
Q ss_pred HHHHhccCChHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHH
Q 036165 457 LTACCHVGLVELGQRLFNMMQEKYKIMP-RTEHYACMVDLLGRAGRLAEAYEMI 509 (566)
Q Consensus 457 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 509 (566)
.+-|.+.|.+..|..-++.+.+.+.-.| ..+....++.+|...|..++|.++.
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 3344445555555555555554422111 1233334445555555555554443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.26 Score=50.01 Aligned_cols=335 Identities=14% Similarity=0.044 Sum_probs=159.4
Q ss_pred HCCCCCCcchHHH-----HHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHhcCC-
Q 036165 172 IQGLKQNIFVIPS-----VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCG---SVEKAKKVFDEMVE- 242 (566)
Q Consensus 172 ~~g~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~- 242 (566)
..|++.+..-|.. +|.-+...+.+..|.++-..+...-..- ..++......+.+.. +-+.+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 3466666555543 4555566677778877776664321111 456666666666553 33445555555554
Q ss_pred -CChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCC----ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhh
Q 036165 243 -KDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVK----PNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVS 317 (566)
Q Consensus 243 -~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 317 (566)
....+|..+.......|+.+-|..+++.=...+.. .+..-+...+.-+.+.|+.+....++-++...- +...
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~ 580 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSS 580 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHH
Confidence 45567778888788888888888877642222111 122234445555666677766666666554430 1111
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHH-----HHhCCCCcHhHHHHHH
Q 036165 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCA-----IVMGVEGDLHVRSALV 392 (566)
Q Consensus 318 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~l~ 392 (566)
+... ..+...|..+|.+..++. |..+ +-..|....+....-.+.-+- ...+..|+ .....
T Consensus 581 l~~~------l~~~p~a~~lY~~~~r~~---~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a 645 (829)
T KOG2280|consen 581 LFMT------LRNQPLALSLYRQFMRHQ---DRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAA 645 (829)
T ss_pred HHHH------HHhchhhhHHHHHHHHhh---chhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHH
Confidence 1111 122334444444443321 0000 011111111111111111000 00111122 12233
Q ss_pred HHHHhcCCHHHHHH----------HHHhcCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHH
Q 036165 393 DMYAKCGFISEART----------LFDKMSE-----RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVL 457 (566)
Q Consensus 393 ~~~~~~g~~~~A~~----------~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 457 (566)
+.+.+.....-..+ +.+.+.. -.-.+.+--+.-+...|+..+|.++-.+. ..||...|-.-+
T Consensus 646 ~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F---kipdKr~~wLk~ 722 (829)
T KOG2280|consen 646 NAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF---KIPDKRLWWLKL 722 (829)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc---CCcchhhHHHHH
Confidence 33333322111111 1111111 11123334444555666666666554443 356666666666
Q ss_pred HHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036165 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELA 537 (566)
Q Consensus 458 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 537 (566)
.++...+++++-+++-+..+ .+.-|.-.+.++.+.|+.+||.+++-+....+ -...+|.+.|++.+|
T Consensus 723 ~aLa~~~kweeLekfAkskk-------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eA 789 (829)
T KOG2280|consen 723 TALADIKKWEELEKFAKSKK-------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEA 789 (829)
T ss_pred HHHHhhhhHHHHHHHHhccC-------CCCCchhHHHHHHhcccHHHHhhhhhccCChH------HHHHHHHHhccHHHH
Confidence 77777777766655554432 13335556677777777777777776654222 344556666666666
Q ss_pred HHHH
Q 036165 538 EIAA 541 (566)
Q Consensus 538 ~~~~ 541 (566)
.+..
T Consensus 790 ad~A 793 (829)
T KOG2280|consen 790 ADLA 793 (829)
T ss_pred HHHH
Confidence 5443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0011 Score=46.30 Aligned_cols=60 Identities=15% Similarity=0.177 Sum_probs=33.0
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHH
Q 036165 462 HVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLFVWGA 523 (566)
Q Consensus 462 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ 523 (566)
..|++++|+++|+++... .+-+...+..++.+|.+.|++++|.++++++. ..|+...|..
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 456666666666666554 22245555566666666666666666666655 3355333333
|
... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.069 Score=48.24 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=40.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036165 491 CMVDLLGRAGRLAEAYEMIKTMSTE-P----DLFVWGALLGACKNHGNIELAEIAAKHL 544 (566)
Q Consensus 491 ~l~~~~~~~g~~~~A~~~~~~~~~~-p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 544 (566)
.+...|.+.|.+..|..-++.+..+ | .......+..+|...|..++|......+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 5667788889998888888777622 2 3556677778899999999988877654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.11 Score=48.88 Aligned_cols=53 Identities=15% Similarity=0.009 Sum_probs=29.1
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHH--HHHhcCChhHHHHHHHHHHHC
Q 036165 289 GFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS--GLVHNFCNDEAFDTFKEMLSQ 344 (566)
Q Consensus 289 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~ 344 (566)
++.-.|+.++|..+-..+++.. ....+...++ ++--.++.+.|...|++.+..
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l 232 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRL 232 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhcc
Confidence 3445677777777666665542 1122222332 233456677777777776654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.029 Score=49.24 Aligned_cols=44 Identities=16% Similarity=0.143 Sum_probs=19.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHH
Q 036165 492 MVDLLGRAGRLAEAYEMIKTMSTE-PD----LFVWGALLGACKNHGNIE 535 (566)
Q Consensus 492 l~~~~~~~g~~~~A~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~ 535 (566)
+.+.|.+.|.+..|..-++.+... |+ ...+..++.+|.+.|..+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 344455555555555555554411 22 123344445555555554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.017 Score=45.19 Aligned_cols=101 Identities=11% Similarity=0.039 Sum_probs=47.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCchHHHHHHHHHHHHhCCCC--cHhHHHHHHHHHHhc
Q 036165 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTS--ATISSILPACASAANMRRGKEIHGCAIVMGVEG--DLHVRSALVDMYAKC 398 (566)
Q Consensus 323 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 398 (566)
.++-..|+.++|+.+|++....|...+. ..+..+.+.+...|++++|..+++......+.. +......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 3444555666666666666555543331 233344455555555555555555554432210 112222233455556
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHH
Q 036165 399 GFISEARTLFDKMSERNTVTWNSMI 423 (566)
Q Consensus 399 g~~~~A~~~~~~~~~~~~~~~~~l~ 423 (566)
|+.++|...+-....++...|.--|
T Consensus 89 gr~~eAl~~~l~~la~~~~~y~ra~ 113 (120)
T PF12688_consen 89 GRPKEALEWLLEALAETLPRYRRAI 113 (120)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666655443333333333333
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0019 Score=44.58 Aligned_cols=55 Identities=16% Similarity=0.118 Sum_probs=27.0
Q ss_pred HHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 036165 424 FGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478 (566)
Q Consensus 424 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 478 (566)
..+.+.|++++|.+.|+++.+..+.+...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455555555555555544444444555555555555555555555555543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.011 Score=59.47 Aligned_cols=137 Identities=7% Similarity=-0.043 Sum_probs=84.1
Q ss_pred CCcHhHHHHHHHHHHhc-----CCHHHHHHHHHhcCC--CC-hhHHHHHHHHHHhc--------CChHHHHHHHHHhhhc
Q 036165 382 EGDLHVRSALVDMYAKC-----GFISEARTLFDKMSE--RN-TVTWNSMIFGCANH--------GYCDEAIELFNQMEER 445 (566)
Q Consensus 382 ~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~ 445 (566)
+.+...|..++.+.... ++.+.|..+|++..+ |+ ...|..+..++... ++...+.+..++....
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 34455555555543321 225566666666654 33 22333332222211 1123344444443332
Q ss_pred --CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHH
Q 036165 446 --KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLFVW 521 (566)
Q Consensus 446 --~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~ 521 (566)
.+.+...|..+.-.....|++++|...++++.+. .|+...|..+..++...|+.++|.+.++++. ..|...+|
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L---~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL---EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 3445567777766667789999999999999865 5788888899999999999999999998876 55665554
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.23 Score=47.38 Aligned_cols=423 Identities=11% Similarity=0.090 Sum_probs=230.3
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCchH------HHHHHHHHHhhcCChHHHHHHhccCCCCC-cchHHHHHHHH--HhcCC
Q 036165 89 IRDRALQSGKILHAQLIVSGLARLTQ------IATKLITFYTECQNIHHARMLFDEIPKTN-IHRWIALTGAY--ARRGY 159 (566)
Q Consensus 89 ~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~--~~~g~ 159 (566)
-+++++.++..+|.++.+..- .++. .-+.++++|-. .+++.....+....+.. -..|-.+..++ -+.+.
T Consensus 17 qkq~~~~esEkifskI~~e~~-~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKE-SSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhh-cchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Confidence 367899999999999877642 2222 23566666654 34444444444443321 23455555443 47889
Q ss_pred hHHHHHHHHHhHHC--CCCC------------CcchHHHHHHHHcccCChhHHHHHHHHHHHcC----CCCchhHHHHHH
Q 036165 160 HQEAVTVFHEMHIQ--GLKQ------------NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS----FGTDAFVVSSLI 221 (566)
Q Consensus 160 ~~~A~~~~~~m~~~--g~~p------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~~~l~ 221 (566)
+++|++.+..-.+. +..| |...=+..+..+...|++.+++.+++++...= ...+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 99999998877665 2222 11122445667788999999999998887653 347888999877
Q ss_pred HHHHhcCCHH---------------HHHHHHHhcCCCChhh----------HHHHHHHHHH--cCChhHHHHHHHHhhhC
Q 036165 222 DMYSKCGSVE---------------KAKKVFDEMVEKDIVA----------MNAMVSGYVQ--RGLATEALNLVEEIGTP 274 (566)
Q Consensus 222 ~~~~~~g~~~---------------~A~~~~~~~~~~~~~~----------~~~li~~~~~--~g~~~~a~~~~~~m~~~ 274 (566)
-+++++=-++ .+.-...++...+... ...++....- ..+..--+++++.-...
T Consensus 175 lmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~ 254 (549)
T PF07079_consen 175 LMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENF 254 (549)
T ss_pred HHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhh
Confidence 6666542221 1111112221111111 1111111111 11222223333333334
Q ss_pred CCCccHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 036165 275 RVKPNVV-TWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP----DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPT 349 (566)
Q Consensus 275 ~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 349 (566)
-+.|+.. ....+...+.+ +.+++..+-+.+....+.+ -..+|..++....+.++..+|-..+.-+..- .|+
T Consensus 255 yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~ 330 (549)
T PF07079_consen 255 YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPR 330 (549)
T ss_pred ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCc
Confidence 4455543 22333333333 5555555555443332222 3557888888899999999998888776543 343
Q ss_pred HHHHHH-------HHHHHH-ccCchHHH---HHHHHHHHHhCCCCcHhHHHHH---HHHHHhcCC-HHHHHHHHHhcCC-
Q 036165 350 SATISS-------ILPACA-SAANMRRG---KEIHGCAIVMGVEGDLHVRSAL---VDMYAKCGF-ISEARTLFDKMSE- 413 (566)
Q Consensus 350 ~~~~~~-------ll~~~~-~~~~~~~a---~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~g~-~~~A~~~~~~~~~- 413 (566)
...-.. +-...+ ...++... ..+|+.+...++.. -.....| +.-+-+.|. -++|.++++.+.+
T Consensus 331 ~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f 409 (549)
T PF07079_consen 331 ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF 409 (549)
T ss_pred chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 332211 112222 22222222 33444444444332 1122222 233445555 8888999888775
Q ss_pred --CChhHHHHHH----HHHHh---cCChHHHHHHHHHhhhc-CCC----CHHHHHHHHHH--HhccCChHHHHHHHHHhH
Q 036165 414 --RNTVTWNSMI----FGCAN---HGYCDEAIELFNQMEER-KKL----DHLSFTAVLTA--CCHVGLVELGQRLFNMMQ 477 (566)
Q Consensus 414 --~~~~~~~~l~----~~~~~---~~~~~~A~~~~~~~~~~-~~~----~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~ 477 (566)
-|...-|.+. .+|.+ .....+-.++-.-+.+. .+| +...-|.|..| +...|++.++.-.-.-+.
T Consensus 410 t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~ 489 (549)
T PF07079_consen 410 TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT 489 (549)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3443333322 23332 12233333333333333 222 23344445443 456889988876555554
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHH
Q 036165 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGA 523 (566)
Q Consensus 478 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 523 (566)
.+.|++.+|..++-++....++++|+.++...+ |+..++++
T Consensus 490 ---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 490 ---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred ---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 578999999999999999999999999999985 56666654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.013 Score=45.89 Aligned_cols=105 Identities=13% Similarity=0.068 Sum_probs=55.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHCCCCCC--cchHHHHHHHHcccCChhHHHHHHHHHHHcCCC--CchhHHHHHHHHHH
Q 036165 150 LTGAYARRGYHQEAVTVFHEMHIQGLKQN--IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFG--TDAFVVSSLIDMYS 225 (566)
Q Consensus 150 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~l~~~~~ 225 (566)
+..++-..|+.++|+.+|++....|.... ...+..+.+.+...|+.++|..+++........ .+......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44555666777777777777776664433 224445555566666777777776666654211 01222222333455
Q ss_pred hcCCHHHHHHHHHhcCCCChhhHHHHHHH
Q 036165 226 KCGSVEKAKKVFDEMVEKDIVAMNAMVSG 254 (566)
Q Consensus 226 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 254 (566)
..|+.++|.+.+-....++...|.--|..
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~ 115 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRF 115 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666665554433333333333333
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0039 Score=53.21 Aligned_cols=87 Identities=9% Similarity=0.155 Sum_probs=58.8
Q ss_pred CcchHHHHHHHHHh-----cCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHccc----------------CChhHHHHH
Q 036165 143 NIHRWIALTGAYAR-----RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHL----------------SDIGTGEKI 201 (566)
Q Consensus 143 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----------------~~~~~a~~~ 201 (566)
|-.+|..++..|.+ .|..+=....++.|.+.|+.-|..+|+.|++.+=+. .+-+-|.++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 44444444444432 355666666677777777777777777777776432 133567888
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 036165 202 HSLVLKHSFGTDAFVVSSLIDMYSKCGS 229 (566)
Q Consensus 202 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 229 (566)
+++|...|+-||..++..+++.+++.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 8888888888888888888888866554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.17 Score=44.60 Aligned_cols=135 Identities=8% Similarity=0.000 Sum_probs=74.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhc-CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHH-----H
Q 036165 419 WNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC-----M 492 (566)
Q Consensus 419 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-----l 492 (566)
-++++..+.-.|.+.-....+++.++. .+.++.....|++.-.+.||.+.|...|++..+. .-..+....+. .
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhh
Confidence 344455555566666666666666665 3445566666666666777777777777655443 11222222222 2
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchH
Q 036165 493 VDLLGRAGRLAEAYEMIKTMST--EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAAN 554 (566)
Q Consensus 493 ~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 554 (566)
...|.-++++.+|...+.+.+. ..++...|.-.-+..-.|+..+|++.++.+.+..|.....
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~ 322 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLH 322 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchh
Confidence 2334445566666666666652 2233444443334444566667777777777666654433
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.26 Score=49.03 Aligned_cols=86 Identities=15% Similarity=0.088 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhH---------
Q 036165 350 SATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--RNTVT--------- 418 (566)
Q Consensus 350 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~--------- 418 (566)
..++..+...+.+...+..|-++|..+-+. ..++++....++|.+|..+-++..+ +++..
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEN 817 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhh
Confidence 344555555556666777777777766432 3567788888999999998888876 33321
Q ss_pred --HHHHHHHHHhcCChHHHHHHHHHhhh
Q 036165 419 --WNSMIFGCANHGYCDEAIELFNQMEE 444 (566)
Q Consensus 419 --~~~l~~~~~~~~~~~~A~~~~~~~~~ 444 (566)
|...-.+|.+.|+..+|..+++++..
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 22223455566666666666666544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.047 Score=54.04 Aligned_cols=89 Identities=17% Similarity=0.193 Sum_probs=62.3
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHH------
Q 036165 447 KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLF------ 519 (566)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~------ 519 (566)
..+..+...+..-+.+...+.-|.++|..|-+ ...+++.+...++|.+|..+-++.+ ..||+.
T Consensus 744 ~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqw 813 (1081)
T KOG1538|consen 744 KAEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQW 813 (1081)
T ss_pred hhhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHH
Confidence 33445555555556666777788888887743 2457888889999999999988877 334421
Q ss_pred -----HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036165 520 -----VWGALLGACKNHGNIELAEIAAKHLS 545 (566)
Q Consensus 520 -----~~~~l~~~~~~~g~~~~A~~~~~~~~ 545 (566)
-+..--.+|.+.|+..+|.++++++-
T Consensus 814 LAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 814 LAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred hhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 12233367889999999999998875
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0012 Score=47.70 Aligned_cols=61 Identities=18% Similarity=0.176 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC-----CC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Q 036165 487 EHYACMVDLLGRAGRLAEAYEMIKTMS-----TE---PD-LFVWGALLGACKNHGNIELAEIAAKHLSEL 547 (566)
Q Consensus 487 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (566)
.+++.+..+|.+.|++++|++.+++.. .. |+ ..++..+..++...|++++|++.+++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345666666666677666666666554 11 22 445666777777777777777777777653
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.024 Score=53.04 Aligned_cols=270 Identities=15% Similarity=0.021 Sum_probs=172.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036165 284 NTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA 363 (566)
Q Consensus 284 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 363 (566)
.-....+.+..++..|+..+...++.... +..-|..-...+...|++++|.--.++-++.. .-........-.++...
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLAL 130 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhh
Confidence 33456777777888888888888887433 46666666677778888888877766654431 11223455556666666
Q ss_pred CchHHHHHHHHHHHH---h-------------CCCCcHhHHHHH-HHHHHhcCCHHHHHHHHHhcCCCChh-HHHHHHH-
Q 036165 364 ANMRRGKEIHGCAIV---M-------------GVEGDLHVRSAL-VDMYAKCGFISEARTLFDKMSERNTV-TWNSMIF- 424 (566)
Q Consensus 364 ~~~~~a~~~~~~~~~---~-------------~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~- 424 (566)
++..+|.+.++.-.. . .-+|.-..+..+ ..++.-.|+.++|..+--.+.+-+.. .+...++
T Consensus 131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg 210 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRG 210 (486)
T ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcc
Confidence 777777766652210 0 001111222222 34556678888888877766653332 3333343
Q ss_pred -HHHhcCChHHHHHHHHHhhhcCCCCHHH---HHHH----------HHHHhccCChHHHHHHHHHhHHhcCCCCC-----
Q 036165 425 -GCANHGYCDEAIELFNQMEERKKLDHLS---FTAV----------LTACCHVGLVELGQRLFNMMQEKYKIMPR----- 485 (566)
Q Consensus 425 -~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~l----------~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----- 485 (566)
++-..++.+.|...|++.... .|+... -... ..-..+.|.+..|.+.+.+.+ ++.|+
T Consensus 211 ~~~yy~~~~~ka~~hf~qal~l-dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal---~idP~n~~~n 286 (486)
T KOG0550|consen 211 LCLYYNDNADKAINHFQQALRL-DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEAL---NIDPSNKKTN 286 (486)
T ss_pred cccccccchHHHHHHHhhhhcc-ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhh---cCCccccchh
Confidence 344577889999999988775 333322 2222 233457899999999999988 44554
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHH
Q 036165 486 TEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALL---GACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561 (566)
Q Consensus 486 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 561 (566)
...|.....+..+.|+.++|+.-.+... +-|..-..+++ .++...+++++|.+-++++.+..-+ .....+|...
T Consensus 287 aklY~nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A 363 (486)
T KOG0550|consen 287 AKLYGNRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREA 363 (486)
T ss_pred HHHHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHH
Confidence 4566677778889999999999999887 44444333333 4567889999999999999987654 4555555443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.005 Score=57.24 Aligned_cols=278 Identities=14% Similarity=0.018 Sum_probs=131.3
Q ss_pred HHHHhcCChHHHHHHHHHhHHCCCCCCc----chHHHHHHHHcccCChhHHHHHHHHHH--H--cCCC-CchhHHHHHHH
Q 036165 152 GAYARRGYHQEAVTVFHEMHIQGLKQNI----FVIPSVLKACGHLSDIGTGEKIHSLVL--K--HSFG-TDAFVVSSLID 222 (566)
Q Consensus 152 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~--~--~g~~-~~~~~~~~l~~ 222 (566)
.-+++.|+.+..+.+|+...+.|.. |. ..|..+..+|.-.+++++|.+++..=+ . .|-. -.......|..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4578888888888888888887633 32 245555556666667777777654311 1 1100 01112223444
Q ss_pred HHHhcCCHHHHHHHHHhcC-------CC--ChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcC
Q 036165 223 MYSKCGSVEKAKKVFDEMV-------EK--DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKS 293 (566)
Q Consensus 223 ~~~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 293 (566)
.+--.|.+++|.-...+-. ++ ....+..+...|...|+.-.... -.+.|-.++.++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev~----------- 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEVT----------- 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHHH-----------
Confidence 4444556665554332211 00 11223334444444432110000 000000011000
Q ss_pred CCHHHHHHHHHHHHH----cCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHH----HCCCCC-CHHHHHHHHHHHHcc
Q 036165 294 GDQVMVSKLFQLMRA----KGV-EPDVVSWTSVISGLVHNFCNDEAFDTFKEML----SQGFCP-TSATISSILPACASA 363 (566)
Q Consensus 294 ~~~~~a~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~-~~~~~~~ll~~~~~~ 363 (566)
..++.|.++|.+-.+ .|- -.--..|..|...|.-.|+++.|+..-+.-+ +-|-+. ....+..+..++.-.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 011222222222111 110 0012234444444444556666655433322 112111 123445555666666
Q ss_pred CchHHHHHHHHHHH----HhCCC-CcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---------CChhHHHHHHHHHHhc
Q 036165 364 ANMRRGKEIHGCAI----VMGVE-GDLHVRSALVDMYAKCGFISEARTLFDKMSE---------RNTVTWNSMIFGCANH 429 (566)
Q Consensus 364 ~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~ 429 (566)
|+++.|.+.++... +.|-. ......-+|.+.|.-..++++|+..+.+-.. ....++.+|..+|...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 66666666655432 22211 1234455677777777777888777765442 2345667778888888
Q ss_pred CChHHHHHHHHHhhhc
Q 036165 430 GYCDEAIELFNQMEER 445 (566)
Q Consensus 430 ~~~~~A~~~~~~~~~~ 445 (566)
|..++|+...+.-.+.
T Consensus 329 g~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 329 GEHRKALYFAELHLRS 344 (639)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 8888887776665543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.037 Score=49.95 Aligned_cols=97 Identities=9% Similarity=0.016 Sum_probs=56.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhcc---CChHHHHHHHHHhHHhcCCCCChhHHHH
Q 036165 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHV---GLVELGQRLFNMMQEKYKIMPRTEHYAC 491 (566)
Q Consensus 415 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 491 (566)
|...|-.|...|...|+...|...|.+..+..++|+..+..+..++... .+-.++..+|+++... -+-|+.....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHHHH
Confidence 4556666666666666666666666666666555665555555544322 2344556666666642 2234445555
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC
Q 036165 492 MVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 492 l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
|...+...|++.+|...|+.|.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL 254 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLL 254 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHH
Confidence 5566666666666666666665
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.55 Score=47.83 Aligned_cols=327 Identities=12% Similarity=0.111 Sum_probs=186.8
Q ss_pred HcCCCCchhHH-----HHHHHHHHhcCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHHcCC--hhHHHHHHHHhhhCCC
Q 036165 207 KHSFGTDAFVV-----SSLIDMYSKCGSVEKAKKVFDEMVEKD---IVAMNAMVSGYVQRGL--ATEALNLVEEIGTPRV 276 (566)
Q Consensus 207 ~~g~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~ 276 (566)
..|++.+..-| ..+++-+...+.+..|.++-.-+..|. ...|......+.+..+ -+++++-+++=.+...
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 34555555444 346777888899999999999886664 5667777777777643 2344444443333222
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC-C---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 036165 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE-P---DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352 (566)
Q Consensus 277 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 352 (566)
-+..+|..+.+.....|+.+.|..+++.=...+.. | +..-+..-+.-....|+.+....++-++..+- +...
T Consensus 505 -~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~ 580 (829)
T KOG2280|consen 505 -TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSS 580 (829)
T ss_pred -CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHH
Confidence 34556778888888899999999887652222111 0 22233444555666777777777666665431 1111
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH--hc-----CCCChhHHHHHHHH
Q 036165 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD--KM-----SERNTVTWNSMIFG 425 (566)
Q Consensus 353 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~~-----~~~~~~~~~~l~~~ 425 (566)
+. ....+...|..++.+..+..-. ..+-+.|....+. .+...|. .. .++-..........
T Consensus 581 l~------~~l~~~p~a~~lY~~~~r~~~~------~~l~d~y~q~dn~-~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~ 647 (829)
T KOG2280|consen 581 LF------MTLRNQPLALSLYRQFMRHQDR------ATLYDFYNQDDNH-QALASFHLQASYAAETIEGRIPALKTAANA 647 (829)
T ss_pred HH------HHHHhchhhhHHHHHHHHhhch------hhhhhhhhcccch-hhhhhhhhhhhhhhhhhcccchhHHHHHHH
Confidence 11 1122334455555555442211 1122223222222 2222221 10 01111122223333
Q ss_pred HHhcCC----------hHHHHHHHHHhhhc--CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 036165 426 CANHGY----------CDEAIELFNQMEER--KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV 493 (566)
Q Consensus 426 ~~~~~~----------~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 493 (566)
+.+... ..+-+++.+.+... ..-...+.+--+.-+...|+-.+|.++-.+.+ -||-..|-.-+
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~ 722 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKL 722 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHH
Confidence 433322 22223334444443 22333456666677788899999988877664 46888888889
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHH
Q 036165 494 DLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLT 559 (566)
Q Consensus 494 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 559 (566)
.++...+++++-+++-+... ++.-|.=...+|.+.|+.++|.+++-+.-.+. +-...|...+
T Consensus 723 ~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~-ekv~ay~~~~ 784 (829)
T KOG2280|consen 723 TALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ-EKVKAYLRVG 784 (829)
T ss_pred HHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCChH-HHHHHHHHhc
Confidence 99999999999999888765 24567778889999999999999987765433 3344444433
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.02 Score=47.30 Aligned_cols=72 Identities=15% Similarity=0.219 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH----hcCCCCChhHH
Q 036165 418 TWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE----KYKIMPRTEHY 489 (566)
Q Consensus 418 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~ 489 (566)
....++..+...|++++|..+.+++....|.+...|..++.++...|+...|.++|+.+.. ..|+.|++.+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4455666677888888888888888888888888888888888888888888888877643 34888877653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.012 Score=54.97 Aligned_cols=125 Identities=9% Similarity=-0.105 Sum_probs=71.0
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCC-----CC----------HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh
Q 036165 422 MIFGCANHGYCDEAIELFNQMEERKK-----LD----------HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT 486 (566)
Q Consensus 422 l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~ 486 (566)
-...|.+.|++..|...|++...... ++ ..+++.+.-++.+.+++..|++..++..+. -++|.
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~--~~~N~ 291 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL--DPNNV 291 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc--CCCch
Confidence 35678888999999999888776521 11 123555556666666666666666666653 23344
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHH-HHHHHHHHHHhcCCH-HHHHHHHHHHhhhC
Q 036165 487 EHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLF-VWGALLGACKNHGNI-ELAEIAAKHLSELE 548 (566)
Q Consensus 487 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~ 548 (566)
...-.=..+|...|+++.|+..|+++. ..|+.. +-+.|+..-.+..+. +...++|..|+..-
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 444455566666666666666666665 344333 333333333333322 33355666666533
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.25 Score=43.55 Aligned_cols=126 Identities=12% Similarity=0.074 Sum_probs=71.3
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHH-----HH
Q 036165 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE----RNTVTWNS-----MI 423 (566)
Q Consensus 353 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~-----l~ 423 (566)
...++..+...|.+.-....++..++...+.++.....|+.+-.+.|+.+.|...|++..+ -|....+. +.
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3444555555566666666666666665555666666677777777777777777765442 11111221 22
Q ss_pred HHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 036165 424 FGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478 (566)
Q Consensus 424 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 478 (566)
..|.-.+++..|...+.++....+.|+...|.-.-+..-.|+..+|.+.++.|++
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2344455566666666666655555555555555555556666666666666664
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.017 Score=52.52 Aligned_cols=95 Identities=14% Similarity=0.102 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhcCCCC---HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-ChhHHHHHHH
Q 036165 419 WNSMIFGCANHGYCDEAIELFNQMEERKKLD---HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP-RTEHYACMVD 494 (566)
Q Consensus 419 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 494 (566)
|...+..+.+.|++++|...|+.+.+..|.+ ...+..+..++...|++++|...|+.+.+.+...| ....+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 3333333344566666666666666653333 23555666666666777777777766665422111 1334444555
Q ss_pred HHHhcCCHHHHHHHHHhcC
Q 036165 495 LLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 495 ~~~~~g~~~~A~~~~~~~~ 513 (566)
++...|+.++|..+++++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 6666677777776666655
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.41 Score=44.85 Aligned_cols=212 Identities=13% Similarity=0.075 Sum_probs=112.7
Q ss_pred cCCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHH--HHHHHHH--HH-ccC
Q 036165 292 KSGDQVMVSKLFQLMRAKGVEP-DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG-FCPTSAT--ISSILPA--CA-SAA 364 (566)
Q Consensus 292 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~--~~~ll~~--~~-~~~ 364 (566)
+.|+.+.|...-+..-.. .| -...+...+...+..|+++.|+++++.-++.. +.++..- -..++.+ .. -..
T Consensus 166 r~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 166 RLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred hcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 445555555555444332 22 23345555666666666666666666554332 2222211 1111111 11 112
Q ss_pred chHHHHHHHHHHHHhCCCCcH-hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHH
Q 036165 365 NMRRGKEIHGCAIVMGVEGDL-HVRSALVDMYAKCGFISEARTLFDKMSE--RNTVTWNSMIFGCANHGYCDEAIELFNQ 441 (566)
Q Consensus 365 ~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 441 (566)
+...|+..-.+..+. .|+. ..-..-..++.+.|+..++-.+++.+=+ |....+. +..+.+.|+ .+..-+++
T Consensus 244 dp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~gd--ta~dRlkR 317 (531)
T COG3898 244 DPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSGD--TALDRLKR 317 (531)
T ss_pred ChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCCC--cHHHHHHH
Confidence 233444444444332 2331 1223345677778888888777776654 3333222 222334443 34444444
Q ss_pred hhhc---CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc-CCHHHHHHHHHhcCC
Q 036165 442 MEER---KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA-GRLAEAYEMIKTMST 514 (566)
Q Consensus 442 ~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 514 (566)
.... .+.+..+...+..+....|++..|..--+... ...|....|..|.+.-... |+-.++..++-+...
T Consensus 318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 4333 34455677777778888888888877766665 3467777777777765544 888888888877663
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.21 Score=43.89 Aligned_cols=50 Identities=18% Similarity=0.169 Sum_probs=23.7
Q ss_pred HHHHHhccCChHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHH
Q 036165 456 VLTACCHVGLVELGQRLFNMMQEKYKIMPR-TEHYACMVDLLGRAGRLAEA 505 (566)
Q Consensus 456 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 505 (566)
+.+-|.+.|.+..|..-++.+++.+.-.+. ......++.+|.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 344555666666666666666554211111 12334555666666655533
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.022 Score=50.66 Aligned_cols=104 Identities=16% Similarity=0.132 Sum_probs=73.7
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCC-CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CC----CHHHHHHHH
Q 036165 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKI-MPRTEHYACMVDLLGRAGRLAEAYEMIKTMST-EP----DLFVWGALL 525 (566)
Q Consensus 452 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p----~~~~~~~l~ 525 (566)
.|+.-+. +.+.|++.+|...|...++.|.- .-.+..+-.|.+++...|++++|..+|..+.. -| -+..+.-|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4555554 34567788888888888875211 11134455688888888888888888877661 12 356777777
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhCCCCchHHH
Q 036165 526 GACKNHGNIELAEIAAKHLSELEPESAANNM 556 (566)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 556 (566)
.+..+.|+.++|...++++.+..|+.+.+..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 8888888899999999998888888776543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.039 Score=45.23 Aligned_cols=87 Identities=11% Similarity=-0.001 Sum_probs=46.7
Q ss_pred hcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 036165 428 NHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYE 507 (566)
Q Consensus 428 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 507 (566)
+.|++++|..+|+-+....+-|..-+..|..++-..+++++|+..|...... + .-|+...-....+|...|+.+.|+.
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHHHHH
Confidence 4555555555555555444445555555555555566666666665555432 2 1233334445566666666666666
Q ss_pred HHHhcCCCC
Q 036165 508 MIKTMSTEP 516 (566)
Q Consensus 508 ~~~~~~~~p 516 (566)
.|+.+..+|
T Consensus 127 ~f~~a~~~~ 135 (165)
T PRK15331 127 CFELVNERT 135 (165)
T ss_pred HHHHHHhCc
Confidence 665555433
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.14 Score=48.70 Aligned_cols=76 Identities=12% Similarity=0.098 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhhcCChHHHHHHhccCCCC-------CcchHHHHHHHHHh---cCChHHHHHHHHHhHHCCCCCCcchHH
Q 036165 114 QIATKLITFYTECQNIHHARMLFDEIPKT-------NIHRWIALTGAYAR---RGYHQEAVTVFHEMHIQGLKQNIFVIP 183 (566)
Q Consensus 114 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~ 183 (566)
.+...++-.|....+++...++++.+... ....-....-++.+ .|+.++|++++..+......++..+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 33334555577778888888888877663 11222234455566 788888888888866666677777777
Q ss_pred HHHHHH
Q 036165 184 SVLKAC 189 (566)
Q Consensus 184 ~ll~~~ 189 (566)
.+.+.+
T Consensus 222 L~GRIy 227 (374)
T PF13281_consen 222 LLGRIY 227 (374)
T ss_pred HHHHHH
Confidence 777665
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0029 Score=36.76 Aligned_cols=26 Identities=38% Similarity=0.509 Sum_probs=24.5
Q ss_pred HHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 541 AKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 541 ~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
++++++++|+++.++..||.+|..+|
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g 27 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQG 27 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCc
Confidence 78999999999999999999999887
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.02 Score=40.53 Aligned_cols=56 Identities=14% Similarity=0.017 Sum_probs=34.6
Q ss_pred HHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHh
Q 036165 424 FGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479 (566)
Q Consensus 424 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 479 (566)
..|.+.+++++|.+.++++....|.+...+.....++...|++++|.+.++.+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34555666666666666666655555566666666666666666666666666643
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.29 Score=44.23 Aligned_cols=49 Identities=16% Similarity=0.092 Sum_probs=21.8
Q ss_pred hcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHh
Q 036165 428 NHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476 (566)
Q Consensus 428 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 476 (566)
..|+..+|..+|+......+.+...-..++.++...|+.+.|..++..+
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 3444444444444444443333344444444444444444444444443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.012 Score=34.18 Aligned_cols=33 Identities=30% Similarity=0.230 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC
Q 036165 519 FVWGALLGACKNHGNIELAEIAAKHLSELEPES 551 (566)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 551 (566)
..|..+...+...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467788899999999999999999999999986
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.058 Score=42.73 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036165 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVD 494 (566)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 494 (566)
..|+..+..+++.+++..|++..|.++.+...+.|+++.+...|..|++
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 5678888888888888888888888888888888888878888887774
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.95 Score=42.65 Aligned_cols=109 Identities=8% Similarity=0.074 Sum_probs=72.6
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC
Q 036165 352 TISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGY 431 (566)
Q Consensus 352 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 431 (566)
+.+..+.-+...|+...|.++-.+. .+ |+...|-..+.+|++.++|++-..+... +..+..|...+.+|.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCC
Confidence 3444455566667766666654443 23 5777777888888888888877776543 4566778888888888888
Q ss_pred hHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 036165 432 CDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNM 475 (566)
Q Consensus 432 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 475 (566)
..+|..+..++. +..-+..|.+.|++.+|.+.--+
T Consensus 253 ~~eA~~yI~k~~---------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 253 KKEASKYIPKIP---------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHHhCC---------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 888887777622 24445566777777777665433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.011 Score=34.42 Aligned_cols=33 Identities=24% Similarity=0.155 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC
Q 036165 519 FVWGALLGACKNHGNIELAEIAAKHLSELEPES 551 (566)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 551 (566)
.+|..+..+|...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 578889999999999999999999999999974
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.056 Score=44.33 Aligned_cols=98 Identities=8% Similarity=-0.034 Sum_probs=78.0
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcC
Q 036165 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHG 532 (566)
Q Consensus 455 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g 532 (566)
....-+...|++++|..+|.-+.-. + .-+..-|..|..++-..|++++|...|.... ...|+...-....++...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~-d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIY-D-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-C-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 3444567899999999999988764 2 3356678889999999999999999998755 3456666777889999999
Q ss_pred CHHHHHHHHHHHhhhCCCCchHH
Q 036165 533 NIELAEIAAKHLSELEPESAANN 555 (566)
Q Consensus 533 ~~~~A~~~~~~~~~~~p~~~~~~ 555 (566)
+.+.|+..|+.+++ .|.+....
T Consensus 120 ~~~~A~~~f~~a~~-~~~~~~l~ 141 (165)
T PRK15331 120 KAAKARQCFELVNE-RTEDESLR 141 (165)
T ss_pred CHHHHHHHHHHHHh-CcchHHHH
Confidence 99999999999998 56665543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.047 Score=48.65 Aligned_cols=95 Identities=17% Similarity=0.171 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC---HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh-hHHHHHH
Q 036165 418 TWNSMIFGCANHGYCDEAIELFNQMEERKKLD---HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT-EHYACMV 493 (566)
Q Consensus 418 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~ 493 (566)
.|+.-+..+ +.|++.+|...|...++..+.+ ...+--|..++...|++++|..+|..+.+.++-.|.. +.+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 466555544 5566888888888888774433 3456677888888888888888888888765555543 6777788
Q ss_pred HHHHhcCCHHHHHHHHHhcC
Q 036165 494 DLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 494 ~~~~~~g~~~~A~~~~~~~~ 513 (566)
.+..+.|+.++|..+|+++.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHH
Confidence 88888888888888888877
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.03 Score=40.25 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=10.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHh
Q 036165 489 YACMVDLLGRAGRLAEAYEMIKT 511 (566)
Q Consensus 489 ~~~l~~~~~~~g~~~~A~~~~~~ 511 (566)
+..+..+|...|++++|++.+++
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444444444444444443
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.23 Score=40.95 Aligned_cols=70 Identities=13% Similarity=0.098 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHH-----HhCCCCcHhHH
Q 036165 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAI-----VMGVEGDLHVR 388 (566)
Q Consensus 318 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~ 388 (566)
...++..+...|++++|...++.+.... +.+...+..++.++...|+...|..+++.+. +.|+.|+..+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3445556666777777777777777653 4566677777777777777777777766653 24777766553
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.45 Score=38.21 Aligned_cols=116 Identities=14% Similarity=0.100 Sum_probs=67.6
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCC---CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 036165 423 IFGCANHGYCDEAIELFNQMEERKKL---DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA 499 (566)
Q Consensus 423 ~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 499 (566)
.....+.|++++|.+.|+.+....+. ....-..++.++.+.|++++|...+++.++.+--.|+. -|...+.++..-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHH
Confidence 33445677788888888887777333 34456677777888888888888888877653333332 244444444432
Q ss_pred CCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchH
Q 036165 500 GRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAAN 554 (566)
Q Consensus 500 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 554 (566)
...+.. +..+. ..=...+....|...|+++++..|++.-+
T Consensus 96 ~~~~~~---~~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 96 EQDEGS---LQSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHhhhH---Hhhhc------------ccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 222211 11111 00111223458888888888888887543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.99 Score=40.11 Aligned_cols=157 Identities=15% Similarity=0.161 Sum_probs=85.4
Q ss_pred HhcCCHHHHHHHHHhcCC--C----ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCC-CCHHHHHHHHHHHhc------
Q 036165 396 AKCGFISEARTLFDKMSE--R----NTVTWNSMIFGCANHGYCDEAIELFNQMEERKK-LDHLSFTAVLTACCH------ 462 (566)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~------ 462 (566)
.+.|++++|.+.|+.+.. | ...+--.++.++-+.+++++|+...++.....+ ....-|...|.+++.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 345666666666666653 1 112233344455566666666666666666521 112223333333332
Q ss_pred -cCChHH---HHHHHHHhHHhc---CCCCChh------------HHHHHHHHHHhcCCHHHHHHHHHhcCCC-C----CH
Q 036165 463 -VGLVEL---GQRLFNMMQEKY---KIMPRTE------------HYACMVDLLGRAGRLAEAYEMIKTMSTE-P----DL 518 (566)
Q Consensus 463 -~g~~~~---a~~~~~~~~~~~---~~~p~~~------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p----~~ 518 (566)
..|... |..-|+.++.++ ...||.. .=..+.+.|.+.|.+..|..-+++|... | ..
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~ 204 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVR 204 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchH
Confidence 122222 333333333331 0111111 0124567788999999998888888732 2 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCc
Q 036165 519 FVWGALLGACKNHGNIELAEIAAKHLSELEPESA 552 (566)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 552 (566)
..+-.+..+|...|-.++|...-+-+....|+++
T Consensus 205 eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 205 EALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 4556666889999999999887766666666664
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.026 Score=54.17 Aligned_cols=99 Identities=9% Similarity=-0.050 Sum_probs=68.7
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHH
Q 036165 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT----EHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVW 521 (566)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 521 (566)
.+.+...++.+..+|.+.|++++|+..|++.++. .|+. ..|..+..+|...|+.++|.+.++++.... ...|
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~~f 146 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NLKF 146 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-chhH
Confidence 3556678999999999999999999999998854 5664 358899999999999999999999987321 1122
Q ss_pred HHHHH--HHHhcCCHHHHHHHHHHHhhhC
Q 036165 522 GALLG--ACKNHGNIELAEIAAKHLSELE 548 (566)
Q Consensus 522 ~~l~~--~~~~~g~~~~A~~~~~~~~~~~ 548 (566)
..+.. .+....+.++..++++.+.+-+
T Consensus 147 ~~i~~DpdL~plR~~pef~eLlee~rk~G 175 (453)
T PLN03098 147 STILNDPDLAPFRASPEFKELQEEARKGG 175 (453)
T ss_pred HHHHhCcchhhhcccHHHHHHHHHHHHhC
Confidence 21111 1112223346666666666543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.02 E-value=1.3 Score=43.31 Aligned_cols=101 Identities=12% Similarity=0.140 Sum_probs=54.6
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCCHHH--HHHHHHHHHh
Q 036165 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST--EPDLFV--WGALLGACKN 530 (566)
Q Consensus 455 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~--~~~l~~~~~~ 530 (566)
.+..++-+.|+.++|++.++++.+.+.......+...|+.++...+.+.++..++.+... -|...+ |+..+-.+..
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 344455566666666666666654311111223445566666666666666666665541 133222 3332222222
Q ss_pred cCC---------------HHHHHHHHHHHhhhCCCCchHH
Q 036165 531 HGN---------------IELAEIAAKHLSELEPESAANN 555 (566)
Q Consensus 531 ~g~---------------~~~A~~~~~~~~~~~p~~~~~~ 555 (566)
.|+ -..|.+++.++.+.||..|.+.
T Consensus 344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred hccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 222 2347788999999999888764
|
The molecular function of this protein is uncertain. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.98 E-value=1.6 Score=41.89 Aligned_cols=408 Identities=13% Similarity=0.109 Sum_probs=223.9
Q ss_pred CCchHHHHHHHHHHhhcCChHHHHHHhccCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHH
Q 036165 110 ARLTQIATKLITFYTECQNIHHARMLFDEIPKTN---IHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVL 186 (566)
Q Consensus 110 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 186 (566)
+.|...|=.|++.|...|..++.+++++++..|- ..+|..-+++-...+++.....+|.+...... +...|..-+
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHHH
Confidence 3577889999999999999999999999998864 45799999988888999999999999988644 455555555
Q ss_pred HHHcccCCh------hHHHHHHHHHHH-cCCCCc-hhHHHHHHHHH---HhcC------CHHHHHHHHHhcCCC---Ch-
Q 036165 187 KACGHLSDI------GTGEKIHSLVLK-HSFGTD-AFVVSSLIDMY---SKCG------SVEKAKKVFDEMVEK---DI- 245 (566)
Q Consensus 187 ~~~~~~~~~------~~a~~~~~~~~~-~g~~~~-~~~~~~l~~~~---~~~g------~~~~A~~~~~~~~~~---~~- 245 (566)
....+.+.. ..-.+.++..+. .++.|- ...|+..+... -..| ++|.....+.++... +.
T Consensus 117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nle 196 (660)
T COG5107 117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLE 196 (660)
T ss_pred HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHH
Confidence 544333321 122334444443 344443 33455444332 2223 455566667666332 11
Q ss_pred hhHH------HHHHHHHH---cC----ChhHHHHHHHHhhh--CCCC----ccHHHHHHHHH-----------HHhcC--
Q 036165 246 VAMN------AMVSGYVQ---RG----LATEALNLVEEIGT--PRVK----PNVVTWNTLIS-----------GFSKS-- 293 (566)
Q Consensus 246 ~~~~------~li~~~~~---~g----~~~~a~~~~~~m~~--~~~~----p~~~~~~~ll~-----------~~~~~-- 293 (566)
..|+ .=+.-... .| -+-.|.+.+++... .|.. .+..+++.+-+ --...
T Consensus 197 klW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l 276 (660)
T COG5107 197 KLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGL 276 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCc
Confidence 1121 11111110 01 13345555555432 2221 12233332111 10000
Q ss_pred ---CC--HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHccCchH
Q 036165 294 ---GD--QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP-ACASAANMR 367 (566)
Q Consensus 294 ---~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~-~~~~~~~~~ 367 (566)
|+ .+...-++++.... +.-....|----.-+...++-+.|+.+.+.-.. ..|+ ++..+. .+.-.++.+
T Consensus 277 ~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~--~sps---L~~~lse~yel~nd~e 350 (660)
T COG5107 277 KLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIE--MSPS---LTMFLSEYYELVNDEE 350 (660)
T ss_pred ccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc--CCCc---hheeHHHHHhhcccHH
Confidence 01 11111222222221 112333343333344455666666665544321 1222 111111 111111111
Q ss_pred HHHHHHHHH-----------------------------HHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----
Q 036165 368 RGKEIHGCA-----------------------------IVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE----- 413 (566)
Q Consensus 368 ~a~~~~~~~-----------------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----- 413 (566)
.....|+.+ .-.....-..+|..+++...+..-++.|+.+|-+..+
T Consensus 351 ~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~ 430 (660)
T COG5107 351 AVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVG 430 (660)
T ss_pred HHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCC
Confidence 111111111 0000111244667788888888889999999988775
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC--hhHHHH
Q 036165 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR--TEHYAC 491 (566)
Q Consensus 414 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~ 491 (566)
+++..+++++.-++. |+...|..+|+--....+.+..-.+-.+.-+...++-+.|..+|+..+++ +..+ ..+|..
T Consensus 431 h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r--~~~~q~k~iy~k 507 (660)
T COG5107 431 HHVYIYCAFIEYYAT-GDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVER--LEKTQLKRIYDK 507 (660)
T ss_pred cceeeeHHHHHHHhc-CCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHH
Confidence 567788888887654 67888999998777666655555566677778888989999999977664 3333 467888
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHH
Q 036165 492 MVDLLGRAGRLAEAYEMIKTMS-TEPDLFVWGALLGAC 528 (566)
Q Consensus 492 l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~ 528 (566)
+++-=..-|++..+..+=+++. .-|...+......-|
T Consensus 508 mi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry 545 (660)
T COG5107 508 MIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRY 545 (660)
T ss_pred HHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHH
Confidence 8887788888888877766665 224443333333333
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.39 Score=46.47 Aligned_cols=61 Identities=13% Similarity=0.028 Sum_probs=34.1
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh----hHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 036165 384 DLHVRSALVDMYAKCGFISEARTLFDKMSE--RNT----VTWNSMIFGCANHGYCDEAIELFNQMEE 444 (566)
Q Consensus 384 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 444 (566)
+...++.+..+|.+.|++++|+..|++..+ |+. .+|..+..+|...|+.++|++.+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555556666666666666666655443 332 2355555666666666666666665554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.64 Score=37.91 Aligned_cols=86 Identities=17% Similarity=0.184 Sum_probs=60.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHHHHHhcCCh
Q 036165 81 YSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYH 160 (566)
Q Consensus 81 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 160 (566)
...++..+...+.+......++.++..+. .++..++.++..|++.++ ......++. ..+......+++.|.+.+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN--KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh--ccccCCHHHHHHHHHHcCcH
Confidence 45677777777888899999999888873 678889999999987643 444444442 23344455577777777777
Q ss_pred HHHHHHHHHh
Q 036165 161 QEAVTVFHEM 170 (566)
Q Consensus 161 ~~A~~~~~~m 170 (566)
+++.-++.++
T Consensus 86 ~~~~~l~~k~ 95 (140)
T smart00299 86 EEAVELYKKD 95 (140)
T ss_pred HHHHHHHHhh
Confidence 7777777665
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.15 Score=47.98 Aligned_cols=121 Identities=16% Similarity=0.088 Sum_probs=94.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC------------------CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHH
Q 036165 390 ALVDMYAKCGFISEARTLFDKMSE------------------RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHL 451 (566)
Q Consensus 390 ~l~~~~~~~g~~~~A~~~~~~~~~------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 451 (566)
.-.+.|.+.|++..|..-|++..+ .-..++..+..+|.+.+++..|++...+.....++|..
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K 292 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK 292 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh
Confidence 346778999999999999887542 12235777888899999999999999999999999999
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhH-HHHHHHHHHhcCCHHH-HHHHHHhcC
Q 036165 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH-YACMVDLLGRAGRLAE-AYEMIKTMS 513 (566)
Q Consensus 452 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~-A~~~~~~~~ 513 (566)
....-..++...|+++.|+..|+++++. .|+... -+-|+.+-.+.....+ ..++|..|.
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~---~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKL---EPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999964 666544 4445555555444443 367777776
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.63 Score=36.41 Aligned_cols=84 Identities=13% Similarity=0.205 Sum_probs=51.3
Q ss_pred cCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhH
Q 036165 398 CGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477 (566)
Q Consensus 398 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 477 (566)
+|++......+-.+. .+.......+.....+|+-+.-.+++..+.+...+++.....+..+|.+.|+..++.+++.++.
T Consensus 69 C~NlKrVi~C~~~~n-~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 69 CGNLKRVIECYAKRN-KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp -S-THHHHHHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 444444444443332 2233455567777888888888888888876677788888888888888888888888888888
Q ss_pred HhcCCC
Q 036165 478 EKYKIM 483 (566)
Q Consensus 478 ~~~~~~ 483 (566)
++ |++
T Consensus 148 ek-G~k 152 (161)
T PF09205_consen 148 EK-GLK 152 (161)
T ss_dssp HT-T-H
T ss_pred Hh-chH
Confidence 77 653
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.32 Score=48.05 Aligned_cols=158 Identities=13% Similarity=0.092 Sum_probs=105.3
Q ss_pred HHHHHhcCChHHHHHHHH--HhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 036165 151 TGAYARRGYHQEAVTVFH--EMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCG 228 (566)
Q Consensus 151 i~~~~~~g~~~~A~~~~~--~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 228 (566)
.....-.|+++++.++.+ ++.. .+ +..-.+.++..+-+.|..+.|.++-.. .. .-.+...+.|
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg 332 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLG 332 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT
T ss_pred HHHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcC
Confidence 344556788888777765 2221 12 244577888888888888888877432 21 2345567889
Q ss_pred CHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036165 229 SVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRA 308 (566)
Q Consensus 229 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 308 (566)
+++.|.++.++.. +...|..|.....++|+++-|.+.|.+..+ |..|+-.|.-.|+.+...++.+....
T Consensus 333 ~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 333 NLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp -HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999998877765 566899999999999999999999998764 56677778888998888888877776
Q ss_pred cCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 036165 309 KGVEPDVVSWTSVISGLVHNFCNDEAFDTFKE 340 (566)
Q Consensus 309 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 340 (566)
.| -++....++.-.|+.++..+++.+
T Consensus 402 ~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 402 RG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred cc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 64 255566667777888888877764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.79 E-value=3 Score=43.47 Aligned_cols=215 Identities=11% Similarity=0.009 Sum_probs=131.5
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHH----hC------------CCCchHHHHHHHHHHhhcCChHHHHHHhccCC
Q 036165 77 SPAAYSERIEIYIRDRALQSGKILHAQLIV----SG------------LARLTQIATKLITFYTECQNIHHARMLFDEIP 140 (566)
Q Consensus 77 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 140 (566)
++...+.+++++...+++-.=.-+++.+.+ .+ ..........-+.++.+..-++.|..+-+.-.
T Consensus 282 s~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~ 361 (933)
T KOG2114|consen 282 SNSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQH 361 (933)
T ss_pred CccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcC
Confidence 344556677777776665443333333322 22 11222334556777788888888888776543
Q ss_pred CCCc---chHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHH
Q 036165 141 KTNI---HRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVV 217 (566)
Q Consensus 141 ~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 217 (566)
-+.. ...-.-..-+.+.|++++|.+-|-+-... +.| ..++.-+........--.+++.+.+.|+. +...-
T Consensus 362 ~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dht 434 (933)
T KOG2114|consen 362 LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHT 434 (933)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhH
Confidence 3211 12333445566789999999888765432 222 24566666667777777888888888864 44555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChh-hHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCH
Q 036165 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIV-AMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQ 296 (566)
Q Consensus 218 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 296 (566)
..|+.+|.+.++.++-.++.+...+.... -....+..+.+.+-.++|..+-..... .......+ +-..+++
T Consensus 435 tlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny 506 (933)
T KOG2114|consen 435 TLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNY 506 (933)
T ss_pred HHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCH
Confidence 67999999999999988888877622211 245566677777777777665444322 22333333 3345778
Q ss_pred HHHHHHHHHH
Q 036165 297 VMVSKLFQLM 306 (566)
Q Consensus 297 ~~a~~~~~~~ 306 (566)
++|.+.+..+
T Consensus 507 ~eAl~yi~sl 516 (933)
T KOG2114|consen 507 EEALRYISSL 516 (933)
T ss_pred HHHHHHHhcC
Confidence 8888877665
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.089 Score=42.12 Aligned_cols=57 Identities=21% Similarity=0.148 Sum_probs=30.5
Q ss_pred HHhcCCHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCc
Q 036165 496 LGRAGRLAEAYEMIKTMSTE-----PDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESA 552 (566)
Q Consensus 496 ~~~~g~~~~A~~~~~~~~~~-----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 552 (566)
..+.|++++|.+.|+.+..+ -...+-..++.+|.+.|++++|...+++.++++|.++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 34455555555555555411 1233445555566666666666666666666655443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.9 Score=37.02 Aligned_cols=82 Identities=15% Similarity=0.137 Sum_probs=33.0
Q ss_pred HHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHH
Q 036165 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265 (566)
Q Consensus 186 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 265 (566)
+..+...+.......+++.+.+.+ ..+....+.++..|++.+ .++..+.++. ..+......+++.|.+.+-++++.
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~~ 89 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEAV 89 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHHH
Confidence 333333344444444444444443 233444444444444432 2222333331 112222333444444445555555
Q ss_pred HHHHHh
Q 036165 266 NLVEEI 271 (566)
Q Consensus 266 ~~~~~m 271 (566)
-++.++
T Consensus 90 ~l~~k~ 95 (140)
T smart00299 90 ELYKKD 95 (140)
T ss_pred HHHHhh
Confidence 554443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.71 E-value=1.4 Score=39.21 Aligned_cols=220 Identities=18% Similarity=0.073 Sum_probs=162.0
Q ss_pred cCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCchHHHHHHHHHHHHh-CCCCcHhHHHHHHHHHHhcCCHHHHH
Q 036165 328 NFCNDEAFDTFKEMLSQGFCP-TSATISSILPACASAANMRRGKEIHGCAIVM-GVEGDLHVRSALVDMYAKCGFISEAR 405 (566)
Q Consensus 328 ~g~~~~A~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 405 (566)
.+....+...+.......... ...........+...+.+..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 456667777777776553221 3567778888888999999998888887763 33345666777778888888899999
Q ss_pred HHHHhcCC--CCh-hHHHHHHH-HHHhcCChHHHHHHHHHhhhcCCC----CHHHHHHHHHHHhccCChHHHHHHHHHhH
Q 036165 406 TLFDKMSE--RNT-VTWNSMIF-GCANHGYCDEAIELFNQMEERKKL----DHLSFTAVLTACCHVGLVELGQRLFNMMQ 477 (566)
Q Consensus 406 ~~~~~~~~--~~~-~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 477 (566)
..+..... ++. ........ .+...|+++.|...+++... ..| ....+......+...++++.+...+....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 99988775 222 23333334 68899999999999999866 333 33445555555778899999999999998
Q ss_pred HhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC
Q 036165 478 EKYKIMP-RTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPD-LFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550 (566)
Q Consensus 478 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 550 (566)
.. .+. ....+..+...+...+++++|...+.... ..|+ ...+..+...+...|+.+++...+.+..+..|.
T Consensus 195 ~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 KL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 64 233 36778888899999999999999998877 3344 455666666666777899999999999998886
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.71 E-value=3.5 Score=44.73 Aligned_cols=49 Identities=12% Similarity=0.041 Sum_probs=23.0
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036165 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512 (566)
Q Consensus 455 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 512 (566)
.|..-+...+++-+|-++..+...+ ..--+..|++...|++|.++....
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 3444445555555555555444322 122334455555555555555443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.63 Score=36.41 Aligned_cols=61 Identities=15% Similarity=0.193 Sum_probs=31.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 036165 250 AMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV 311 (566)
Q Consensus 250 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 311 (566)
..+..+.++|+-+.-.+++.++...+ .+++.....+..+|.+.|+..++.+++.+..+.|+
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34455556666666666666654322 45555555666666666666666666666655553
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.67 E-value=1.5 Score=39.10 Aligned_cols=217 Identities=16% Similarity=0.078 Sum_probs=156.1
Q ss_pred CCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCchHHHH
Q 036165 293 SGDQVMVSKLFQLMRAKGVE-PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ-GFCPTSATISSILPACASAANMRRGK 370 (566)
Q Consensus 293 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~ 370 (566)
.+....+...+......... .....+......+...+....+...+...... ........+..........+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35556666666666554322 13567777888889999999999999888753 33455566777777888888899999
Q ss_pred HHHHHHHHhCCCCcHhHHHHHHH-HHHhcCCHHHHHHHHHhcCCCC------hhHHHHHHHHHHhcCChHHHHHHHHHhh
Q 036165 371 EIHGCAIVMGVEGDLHVRSALVD-MYAKCGFISEARTLFDKMSERN------TVTWNSMIFGCANHGYCDEAIELFNQME 443 (566)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 443 (566)
..+.........+. ........ .+...|+++.|...+.+....+ ...+......+...++.+.+...+.+..
T Consensus 116 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 99998887654431 22222333 7889999999999998875421 2233333444667889999999999999
Q ss_pred hcCCC-CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 444 ERKKL-DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR-TEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 444 ~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
...+. ....+..+...+...++++.+...+...... .|+ ...+..+...+...|..+++...+.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL---DPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh---CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 87666 5788888889999999999999999998864 343 4455555555667778999998888776
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.2 Score=39.76 Aligned_cols=48 Identities=15% Similarity=0.264 Sum_probs=24.8
Q ss_pred CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cCCCCChhhHHHHHH
Q 036165 276 VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRA-KGVEPDVVSWTSVIS 323 (566)
Q Consensus 276 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~ 323 (566)
..|+..+..+++.+|+..|++..|.++++...+ .+++.+..+|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 345555555555555555555555555555433 334444445554443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.11 Score=46.26 Aligned_cols=102 Identities=13% Similarity=0.168 Sum_probs=78.4
Q ss_pred hHHHHHHhccCC--CCCcchHHHHHHHHHhc-----CChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccC--------
Q 036165 129 IHHARMLFDEIP--KTNIHRWIALTGAYARR-----GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLS-------- 193 (566)
Q Consensus 129 ~~~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-------- 193 (566)
+-..++.|+..+ ++|-.+|...+..+... +..+-....++.|.+.|+.-|..+|+.|+..+-+..
T Consensus 50 Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ 129 (406)
T KOG3941|consen 50 LVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQ 129 (406)
T ss_pred ccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHH
Confidence 344566677666 46777888888777543 556777778889999999999999999999875432
Q ss_pred --------ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 036165 194 --------DIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSV 230 (566)
Q Consensus 194 --------~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 230 (566)
.-+-+.+++++|...|+.||..+-..|++++.+.+-.
T Consensus 130 ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 130 KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2245788899999999999999999999998877753
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.48 E-value=3.1 Score=41.64 Aligned_cols=184 Identities=12% Similarity=-0.018 Sum_probs=108.7
Q ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036165 279 NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358 (566)
Q Consensus 279 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 358 (566)
+..+|..-+.--.+.|+.+.+.-+++...-. +..=...|--.++-....|+.+-|..++....+-.++-.+.+-..-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4566777777777788888887777776432 111223343444444445777777777666555443333333322333
Q ss_pred HHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH---HHHHhcCC--CChhHHHHHHH-----HHHh
Q 036165 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR---TLFDKMSE--RNTVTWNSMIF-----GCAN 428 (566)
Q Consensus 359 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~--~~~~~~~~l~~-----~~~~ 428 (566)
.+-..|+++.|..+++.+...- +.-..+-..-+....+.|+.+.+. .++....+ .+......+.- .+.-
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHH
Confidence 3445678888888888887654 222333334456666777777777 44443332 22222222222 2233
Q ss_pred cCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccC
Q 036165 429 HGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVG 464 (566)
Q Consensus 429 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 464 (566)
.++.+.|..++.++.+..+++...|..+++.+...+
T Consensus 454 ~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 454 REDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 577888888888888888888888888888665544
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.44 E-value=1 Score=41.85 Aligned_cols=153 Identities=13% Similarity=0.038 Sum_probs=66.5
Q ss_pred HHHcCChhHHHHHHHHhhhC--CCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCCC---ChhhHHHHHHHHHh
Q 036165 255 YVQRGLATEALNLVEEIGTP--RVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK--GVEP---DVVSWTSVISGLVH 327 (566)
Q Consensus 255 ~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~---~~~~~~~li~~~~~ 327 (566)
+..+.+.++|+..+.+-..+ ...--..+|..+..+.++.|.+++++..--..++. .... -...|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777766665432 11112345555666666666666655433222211 0011 11223333333333
Q ss_pred cCChhHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCC-----CCcHhHHHHHHHHHHhc
Q 036165 328 NFCNDEAFDTFKEMLSQ-GFCP---TSATISSILPACASAANMRRGKEIHGCAIVMGV-----EGDLHVRSALVDMYAKC 398 (566)
Q Consensus 328 ~g~~~~A~~~~~~m~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~ 398 (566)
..++.+++.+-+.-... |..| .-....++..++...+.++++.+.|+.+.+.-. .....++..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 33444444433332221 1111 112223344455555556666555555544211 11234455555555555
Q ss_pred CCHHHHHHH
Q 036165 399 GFISEARTL 407 (566)
Q Consensus 399 g~~~~A~~~ 407 (566)
.++++|.-+
T Consensus 176 ~D~~Kal~f 184 (518)
T KOG1941|consen 176 KDYEKALFF 184 (518)
T ss_pred HhhhHHhhh
Confidence 555555443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.16 Score=45.17 Aligned_cols=113 Identities=15% Similarity=0.153 Sum_probs=76.9
Q ss_pred HHHHHHhcC--CCChhhHHHHHHHHHHc-----CChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 036165 233 AKKVFDEMV--EKDIVAMNAMVSGYVQR-----GLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQL 305 (566)
Q Consensus 233 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 305 (566)
.++.|.... ++|-.+|-+.+..+... +..+-....++.|.+-|+.-|..+|+.|++.+-+..-
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf---------- 122 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF---------- 122 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------
Confidence 345566664 56777888888777653 6677788888999999999999999999887755321
Q ss_pred HHHcCCCCChhhHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCc
Q 036165 306 MRAKGVEPDVVSWTSVISGLVHN-FCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN 365 (566)
Q Consensus 306 ~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 365 (566)
.|....- ..+..- .+-+-+++++++|...|+.||..+-..++.++.+.+-
T Consensus 123 ------iP~nvfQ----~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 123 ------IPQNVFQ----KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred ------ccHHHHH----HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1111111 111111 1224567888888888888888888888888877765
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.064 Score=48.90 Aligned_cols=100 Identities=14% Similarity=0.072 Sum_probs=54.2
Q ss_pred HHhccCChHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHH
Q 036165 459 ACCHVGLVELGQRLFNMMQEKYKIMP-RTEHYACMVDLLGRAGRLAEAYEMIKTMST--EPDLFVWGALLGACKNHGNIE 535 (566)
Q Consensus 459 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~ 535 (566)
-|.+.|.+++|+..+..... +.| ++.++..-..+|.+..++..|..-.+.+.. +.=...|..-+.+-...|+.+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 45566666666666665552 233 555555555666666666655555544431 111222333333344556667
Q ss_pred HHHHHHHHHhhhCCCCchHHHHHHHH
Q 036165 536 LAEIAAKHLSELEPESAANNMLLTDL 561 (566)
Q Consensus 536 ~A~~~~~~~~~~~p~~~~~~~~l~~~ 561 (566)
+|.+-++.++++.|++......++.+
T Consensus 183 EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred HHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 77777777777777766555444443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.40 E-value=4.1 Score=42.49 Aligned_cols=152 Identities=14% Similarity=0.158 Sum_probs=96.7
Q ss_pred CCChhhHHHHHHHHH----hcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCC---CcchH
Q 036165 75 HLSPAAYSERIEIYI----RDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKT---NIHRW 147 (566)
Q Consensus 75 ~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~ 147 (566)
..++++...+...|+ ..|++++|..-+-+.+.. --.+ .++.-|-...++.+-...++.+.+. +...-
T Consensus 361 ~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s----~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dht 434 (933)
T KOG2114|consen 361 HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPS----EVIKKFLDAQRIKNLTSYLEALHKKGLANSDHT 434 (933)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChH----HHHHHhcCHHHHHHHHHHHHHHHHcccccchhH
Confidence 455666666666665 478998887766555432 1111 2455565556666666666666553 44556
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 036165 148 IALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKC 227 (566)
Q Consensus 148 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 227 (566)
+.|+.+|.+.++.++-.+..+.-. .|.. ..-....+..|.+.+-.++|..+-.+... +..+...++ -..
T Consensus 435 tlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~ 503 (933)
T KOG2114|consen 435 TLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDL 503 (933)
T ss_pred HHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHh
Confidence 788999999999888877776654 3322 22355677777777778887766554432 333444333 456
Q ss_pred CCHHHHHHHHHhcCCC
Q 036165 228 GSVEKAKKVFDEMVEK 243 (566)
Q Consensus 228 g~~~~A~~~~~~~~~~ 243 (566)
|++++|.+.+..++-+
T Consensus 504 ~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 504 HNYEEALRYISSLPIS 519 (933)
T ss_pred cCHHHHHHHHhcCCHH
Confidence 8899999999988543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.26 E-value=1.1 Score=44.32 Aligned_cols=105 Identities=13% Similarity=0.200 Sum_probs=69.1
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHH
Q 036165 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQR 471 (566)
Q Consensus 392 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 471 (566)
.+...++|+++.|.++.++.. +...|..|......+|+++-|++.|++..+ |..|+-.|.-.|+.+...+
T Consensus 325 FeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 325 FELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHH
T ss_pred hHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHH
Confidence 344567788888887766553 566788888888888888888888887654 5566666777777777777
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 472 LFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 472 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
+.+....+ |. ++.-..++.-.|+.++..+++.+..
T Consensus 395 l~~~a~~~-~~------~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 395 LAKIAEER-GD------INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHc-cC------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 77666654 32 4445555556677777777776554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.25 Score=38.42 Aligned_cols=55 Identities=24% Similarity=0.076 Sum_probs=32.8
Q ss_pred HHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHh
Q 036165 425 GCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479 (566)
Q Consensus 425 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 479 (566)
+.+..|+.+.|++.|.+.....+.+...||.-..++--.|+.++|..-+++..+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 3445566666666666665555555566666666666666666666666655554
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.048 Score=31.52 Aligned_cols=33 Identities=21% Similarity=0.130 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC
Q 036165 519 FVWGALLGACKNHGNIELAEIAAKHLSELEPES 551 (566)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 551 (566)
.+|..+...|...|++++|...++++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 357788888999999999999999999998853
|
... |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=1.4 Score=42.81 Aligned_cols=109 Identities=13% Similarity=0.058 Sum_probs=78.4
Q ss_pred ChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHH
Q 036165 431 YCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR-TEHYACMVDLLGRAGRLAEAYEMI 509 (566)
Q Consensus 431 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 509 (566)
...+|.++-++..+..+.|+.....+..+....++++.|...|++... +.|| ...|......+.-+|+.++|.+.+
T Consensus 319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 355677777778877888888888888888888889999999999885 4555 456666666677789999999999
Q ss_pred HhcC-CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHH
Q 036165 510 KTMS-TEPDL---FVWGALLGACKNHGNIELAEIAAKH 543 (566)
Q Consensus 510 ~~~~-~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~ 543 (566)
++.. ..|.. ....-.+..|+.++ .++|++++-+
T Consensus 396 ~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 396 DKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 8854 45542 33333444565554 6777777765
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.10 E-value=2.2 Score=37.57 Aligned_cols=145 Identities=14% Similarity=0.149 Sum_probs=80.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCC---CH---HHHHHHHH
Q 036165 385 LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL---DH---LSFTAVLT 458 (566)
Q Consensus 385 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~---~~~~~l~~ 458 (566)
...++.-..+|..+|.++.|-..+++.-+ .....++++|+++|++....+.. +. ..+....+
T Consensus 91 vdl~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr 158 (308)
T KOG1585|consen 91 VDLYEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSR 158 (308)
T ss_pred HHHHHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 34556666677777777766655554321 12334566666666665544111 11 12344445
Q ss_pred HHhccCChHHHHHHHHHhHHh---cCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhc---C---CCCCHHHHHHHHHHH
Q 036165 459 ACCHVGLVELGQRLFNMMQEK---YKIMPRT-EHYACMVDLLGRAGRLAEAYEMIKTM---S---TEPDLFVWGALLGAC 528 (566)
Q Consensus 459 ~~~~~g~~~~a~~~~~~~~~~---~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~---~---~~p~~~~~~~l~~~~ 528 (566)
.+.+...+++|-..+.+-... ..--++. ..|-..|-.|.-..++..|...++.- . ...+..+...|+.+|
T Consensus 159 ~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay 238 (308)
T KOG1585|consen 159 VLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY 238 (308)
T ss_pred HhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh
Confidence 566667777766655443211 0111221 23445555666677888888888773 2 123567777888777
Q ss_pred HhcCCHHHHHHHHH
Q 036165 529 KNHGNIELAEIAAK 542 (566)
Q Consensus 529 ~~~g~~~~A~~~~~ 542 (566)
..||.+++..++.
T Consensus 239 -d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 239 -DEGDIEEIKKVLS 251 (308)
T ss_pred -ccCCHHHHHHHHc
Confidence 5677777766654
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.03 E-value=1.1 Score=41.69 Aligned_cols=127 Identities=17% Similarity=0.078 Sum_probs=73.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhc--CCCC----HHHHHHHHHHHhccCChHHHHHHHHHhHH---hcCCCCChhHHH
Q 036165 420 NSMIFGCANHGYCDEAIELFNQMEER--KKLD----HLSFTAVLTACCHVGLVELGQRLFNMMQE---KYKIMPRTEHYA 490 (566)
Q Consensus 420 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~p~~~~~~ 490 (566)
.+|..++...+.++++++.|+...+- ...| ...+..|...+....|+++|.-+..++.+ .+++..-..-|.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 33555666666777777777776654 1112 23577777777777777777665544432 223332222232
Q ss_pred -----HHHHHHHhcCCHHHHHHHHHhcC----CCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036165 491 -----CMVDLLGRAGRLAEAYEMIKTMS----TEPDLFV----WGALLGACKNHGNIELAEIAAKHLSE 546 (566)
Q Consensus 491 -----~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (566)
.+.-+|...|.+-+|.+..++.. ...|..+ ...+.+.|...|+.|.|..-|+++..
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 23345566677666666666543 2233333 34566777777888777777776653
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.75 Score=46.20 Aligned_cols=83 Identities=18% Similarity=-0.028 Sum_probs=36.0
Q ss_pred ChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhc-CC-CCChhHHHHHHHHHHhcCCHHHHHHH
Q 036165 431 YCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY-KI-MPRTEHYACMVDLLGRAGRLAEAYEM 508 (566)
Q Consensus 431 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~ 508 (566)
+.+.|.++++.+.+..|....-...-.+.+...|+.++|++.|+.+.... .. +.....+--++..+.-.++|++|.+.
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 34455555555554433333333333334445555555555555433210 00 01112223344445555555555555
Q ss_pred HHhcC
Q 036165 509 IKTMS 513 (566)
Q Consensus 509 ~~~~~ 513 (566)
|.++.
T Consensus 328 f~~L~ 332 (468)
T PF10300_consen 328 FLRLL 332 (468)
T ss_pred HHHHH
Confidence 55554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.99 E-value=2 Score=36.47 Aligned_cols=114 Identities=8% Similarity=0.001 Sum_probs=74.9
Q ss_pred HHHHHHHHhhhcCCCCH-HHH--HHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh----hHHHHHHHHHHhcCCHHHHH
Q 036165 434 EAIELFNQMEERKKLDH-LSF--TAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT----EHYACMVDLLGRAGRLAEAY 506 (566)
Q Consensus 434 ~A~~~~~~~~~~~~~~~-~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~ 506 (566)
+.....+++....+.+. ..+ ..+...+...|++++|+.-++..... +-|. ..--.|.......|++|+|+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL 146 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAAL 146 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 44444455554422222 222 23445778899999999999887743 2222 12234567788899999999
Q ss_pred HHHHhcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHhhhCCCC
Q 036165 507 EMIKTMSTEPDLFVW--GALLGACKNHGNIELAEIAAKHLSELEPES 551 (566)
Q Consensus 507 ~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 551 (566)
..++... .++.... ..-..++...|+.++|...|+++++.++++
T Consensus 147 ~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 147 KTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 9998775 3433332 233367899999999999999999987544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.92 E-value=2.4 Score=42.72 Aligned_cols=159 Identities=12% Similarity=0.094 Sum_probs=100.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHHc----cCchHHHHHHHHHHHHhCCCCcHhH
Q 036165 318 WTSVISGLVHNFCNDEAFDTFKEMLSQG-FCPTS-----ATISSILPACAS----AANMRRGKEIHGCAIVMGVEGDLHV 387 (566)
Q Consensus 318 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 387 (566)
+..+++...-.|+-+.+++.+.+..+.+ +.-.. ..|..++..++. ..+.+.+.+++..+.+.- |+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHH
Confidence 3444555555677777777777665432 21111 122233333332 456778888888888764 34333
Q ss_pred HH-HHHHHHHhcCCHHHHHHHHHhcCC-----C--ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHH
Q 036165 388 RS-ALVDMYAKCGFISEARTLFDKMSE-----R--NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTA 459 (566)
Q Consensus 388 ~~-~l~~~~~~~g~~~~A~~~~~~~~~-----~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 459 (566)
|. .-.+.+...|++++|++.|++... + ....+--+.-.+.-..++++|.+.|..+.+...-...+|..+..+
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 33 445677788999999999997653 1 223344456667788999999999999998756566666665554
Q ss_pred H-hccCCh-------HHHHHHHHHhHH
Q 036165 460 C-CHVGLV-------ELGQRLFNMMQE 478 (566)
Q Consensus 460 ~-~~~g~~-------~~a~~~~~~~~~ 478 (566)
| ...|+. ++|.++|.++..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 4 456766 777778777643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.88 E-value=1.8 Score=37.73 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=11.8
Q ss_pred HHhcCChhHHHHHHHHH
Q 036165 325 LVHNFCNDEAFDTFKEM 341 (566)
Q Consensus 325 ~~~~g~~~~A~~~~~~m 341 (566)
+.-.+++++|.++|.+.
T Consensus 24 fgg~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERA 40 (288)
T ss_pred cCCCcchHHHHHHHHHH
Confidence 44456788888887765
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.83 E-value=3.3 Score=38.41 Aligned_cols=158 Identities=11% Similarity=0.043 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHhcCCHHH---HHHHHHhcCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHH
Q 036165 386 HVRSALVDMYAKCGFISE---ARTLFDKMSE--RN-TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTA 459 (566)
Q Consensus 386 ~~~~~l~~~~~~~g~~~~---A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 459 (566)
.+...++.+|...+..+. |.++++.+.. |+ +..+..-+..+.+.++.+++.+.+.+|.....-....+..+++.
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 456677777877776544 4445544432 44 34444556666668888999999999988744334445554444
Q ss_pred H---hccCChHHHHHHHHHhHHhcCCCCChh-HHH-HHHH---HHHhcC------CHHHHHHHHHhcC----CCCCHHH-
Q 036165 460 C---CHVGLVELGQRLFNMMQEKYKIMPRTE-HYA-CMVD---LLGRAG------RLAEAYEMIKTMS----TEPDLFV- 520 (566)
Q Consensus 460 ~---~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~-~l~~---~~~~~g------~~~~A~~~~~~~~----~~p~~~~- 520 (566)
+ ... ....+...++.+... .+.|... ... .++. ...+.+ +.+...++++... .+.+..+
T Consensus 165 i~~l~~~-~~~~a~~~ld~~l~~-r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 165 IKQLAEK-SPELAAFCLDYLLLN-RFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHhh-CcHHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 4 333 234566666665554 4555543 111 1111 111211 1444444454322 2223222
Q ss_pred --HHHHH----HHHHhcCCHHHHHHHHHHHh
Q 036165 521 --WGALL----GACKNHGNIELAEIAAKHLS 545 (566)
Q Consensus 521 --~~~l~----~~~~~~g~~~~A~~~~~~~~ 545 (566)
..+++ ..+.+.++++.|...|+-++
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 23333 34668889999999998655
|
It is also involved in sporulation []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=1.4 Score=42.94 Aligned_cols=127 Identities=12% Similarity=0.104 Sum_probs=89.2
Q ss_pred hHHHHHHHHHhhhc--CCC-CHHHHHHHHHHHhc---------cCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 036165 432 CDEAIELFNQMEER--KKL-DHLSFTAVLTACCH---------VGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA 499 (566)
Q Consensus 432 ~~~A~~~~~~~~~~--~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 499 (566)
.+.|..+|.+.... ..| ....|..+..++.. ..+..+|.++.++..+. -+-|+.....+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhh
Confidence 45677777777733 222 34444444443321 23456677777777764 244677777778878888
Q ss_pred CCHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHH
Q 036165 500 GRLAEAYEMIKTMS-TEPD-LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTD 560 (566)
Q Consensus 500 g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 560 (566)
|+++.|...|+++. ..|| ..+|......+.-.|+.++|.+.++++++++|.-..+-++--+
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~ 414 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKEC 414 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHH
Confidence 89999999999987 4565 5667777777889999999999999999999977655544333
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.77 E-value=4.2 Score=39.28 Aligned_cols=148 Identities=12% Similarity=-0.020 Sum_probs=76.9
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcC-C---CCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC--hh
Q 036165 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEERK-K---LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR--TE 487 (566)
Q Consensus 414 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~ 487 (566)
....+|..+...+.+.|+++.|...+.++.... . ..+.....-++..-..|+..+|...++..... .+..+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 344567777777888888888888877777642 1 13444555556666777888888877777662 11111 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH-HhcCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHhhhCCCCchHHHHHHH
Q 036165 488 HYACMVDLLGRAGRLAEAYEMI-KTMSTEPDLFVWGALLGACKNH------GNIELAEIAAKHLSELEPESAANNMLLTD 560 (566)
Q Consensus 488 ~~~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 560 (566)
....+...+.. ..+.....- .....+.-..++..+..-+... ++.+++...|+.+.+..|+....+..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 000000000 0000000012233333333333 67788888888888888877777777776
Q ss_pred HHhh
Q 036165 561 LYAN 564 (566)
Q Consensus 561 ~~~~ 564 (566)
.+.+
T Consensus 301 ~~~~ 304 (352)
T PF02259_consen 301 FNDK 304 (352)
T ss_pred HHHH
Confidence 6543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.065 Score=31.54 Aligned_cols=27 Identities=15% Similarity=0.036 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036165 520 VWGALLGACKNHGNIELAEIAAKHLSE 546 (566)
Q Consensus 520 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (566)
+|..|...|.+.|++++|+.++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888888888888888888654
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.70 E-value=2.8 Score=36.90 Aligned_cols=189 Identities=14% Similarity=0.018 Sum_probs=108.6
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--hhHHHHHHHHHHhcC
Q 036165 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN--TVTWNSMIFGCANHG 430 (566)
Q Consensus 353 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~~~ 430 (566)
|.....+|...++++++...+.+..+- .+.+...|. ..+.++.|.-+.+++.+-+ +..|+--...|.++|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 334445666777777777766655431 111111111 1123445555555555422 234556677888999
Q ss_pred ChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCC----CCChhHHHHHHHHHHhcCCHHHHH
Q 036165 431 YCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI----MPRTEHYACMVDLLGRAGRLAEAY 506 (566)
Q Consensus 431 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A~ 506 (566)
.++.|-..+++.-+. .+..++++|++++++...-... ..-...+......|.+..++++|-
T Consensus 106 spdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred CcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence 988888777776543 2334556666666665432111 112344566677888889998887
Q ss_pred HHHHhcC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhh----hCCCCchHHHHHHHHHhh
Q 036165 507 EMIKTMS-------TEPDL-FVWGALLGACKNHGNIELAEIAAKHLSE----LEPESAANNMLLTDLYAN 564 (566)
Q Consensus 507 ~~~~~~~-------~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~ 564 (566)
..+.+-. .-++. ..+.+.+-.+.-..|+..|++.++..-+ ..|++......|...|-.
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~ 240 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDE 240 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhcc
Confidence 7666543 11332 2344445555666689999999888554 456676667666666543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.51 E-value=3.7 Score=37.41 Aligned_cols=141 Identities=12% Similarity=0.085 Sum_probs=77.9
Q ss_pred HHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----ChhHHHHHHHHHHhcCChH
Q 036165 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER----NTVTWNSMIFGCANHGYCD 433 (566)
Q Consensus 358 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~ 433 (566)
......|++..+...++........ +....-.++++|...|+.+.|..++..+... .......-+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3445667777777777777765444 3455566788888888888888888887641 1111112233333433333
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 036165 434 EAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500 (566)
Q Consensus 434 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 500 (566)
+...+-.+.-. .+.|...-..+...+...|+.+.|.+.+-.+..+..-.-|...-..|++.+.--|
T Consensus 221 ~~~~l~~~~aa-dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAA-DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 33333222222 3446666666666777777777777655544443111223334445555544444
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.17 Score=31.36 Aligned_cols=37 Identities=22% Similarity=0.225 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHH
Q 036165 419 WNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTA 455 (566)
Q Consensus 419 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 455 (566)
|..+...|...|++++|+++|+++.+..+.|...+..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 3444455555555555555555555544444444433
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.33 E-value=9.8 Score=41.58 Aligned_cols=155 Identities=12% Similarity=0.017 Sum_probs=95.2
Q ss_pred CCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHH----HHHhcCCCHHHHHHHH
Q 036165 228 GSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLI----SGFSKSGDQVMVSKLF 303 (566)
Q Consensus 228 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll----~~~~~~~~~~~a~~~~ 303 (566)
+++++|+..+.++. ...|.-.+..-.++|-+++|+.++ .|+...+..+. ..+.....+++|.-+|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 45666666665553 334444555555666677776654 45555554444 4445567777777777
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCchHHHHHHHHHHHHhCC
Q 036165 304 QLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA--TISSILPACASAANMRRGKEIHGCAIVMGV 381 (566)
Q Consensus 304 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 381 (566)
+..-+. .--+.+|..+|++.+|+.+..++.. .-+.. +-..|..-+...++.-+|-++..+....
T Consensus 963 e~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-- 1028 (1265)
T KOG1920|consen 963 ERCGKL---------EKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-- 1028 (1265)
T ss_pred HHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--
Confidence 665322 2246778888999999888887732 12222 2256666777777777777766654432
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 036165 382 EGDLHVRSALVDMYAKCGFISEARTLFDKMSE 413 (566)
Q Consensus 382 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 413 (566)
..-.+..|++...+++|.++.....+
T Consensus 1029 ------~~~av~ll~ka~~~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 1029 ------PEEAVALLCKAKEWEEALRVASKAKR 1054 (1265)
T ss_pred ------HHHHHHHHhhHhHHHHHHHHHHhccc
Confidence 12345567777788999888776664
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.29 E-value=3.7 Score=36.61 Aligned_cols=56 Identities=14% Similarity=0.125 Sum_probs=30.9
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCH---HHHHHHHHHHhccCChHHHHHHHHHhHH
Q 036165 423 IFGCANHGYCDEAIELFNQMEERKKLDH---LSFTAVLTACCHVGLVELGQRLFNMMQE 478 (566)
Q Consensus 423 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 478 (566)
..-|.+.|.+..|..-+++|.+..+... ..+-.+..+|...|..++|.+.-+-+..
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 3455666666666666666666522222 2344445566666666666655555443
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.18 Score=32.63 Aligned_cols=40 Identities=23% Similarity=0.141 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHH
Q 036165 522 GALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561 (566)
Q Consensus 522 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 561 (566)
-.+.-++.+.|++++|.+..+.+++.+|+|..+..+...|
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 3455678999999999999999999999998877665544
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.06 E-value=6.6 Score=38.56 Aligned_cols=103 Identities=15% Similarity=0.103 Sum_probs=56.0
Q ss_pred CCCCHHHH-HHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH--hcCCHHHHHHHHHhcC--CCCCHHH
Q 036165 446 KKLDHLSF-TAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLG--RAGRLAEAYEMIKTMS--TEPDLFV 520 (566)
Q Consensus 446 ~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~--~~p~~~~ 520 (566)
..++..|+ +.++.-+.+.|-+.+|..++..+... .+|+...|..++..=. ..-++..+...++.|. .-.|+..
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l--pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL--PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDL 532 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC--CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHH
Confidence 34444332 34445555566666666666666542 3344555555543211 1122556666666665 2356666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh-hCCC
Q 036165 521 WGALLGACKNHGNIELAEIAAKHLSE-LEPE 550 (566)
Q Consensus 521 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~ 550 (566)
|...+.--..+|..+.+-.++.++++ ++|.
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 76666666677777777666666664 4443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.04 E-value=8.5 Score=39.80 Aligned_cols=276 Identities=15% Similarity=0.077 Sum_probs=154.5
Q ss_pred hhHHHHHHHHhhhCCCCccHHHH-HHHHHH-HhcCCCHHHHHHHHHHHHH-------cCCCCChhhHHHHHHHHHhcC--
Q 036165 261 ATEALNLVEEIGTPRVKPNVVTW-NTLISG-FSKSGDQVMVSKLFQLMRA-------KGVEPDVVSWTSVISGLVHNF-- 329 (566)
Q Consensus 261 ~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g-- 329 (566)
...+.+.++...+.|..-..... .....+ +....|.+.|...++.+.+ .| .+.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 46788888888776632222111 112222 4466789999999998866 44 4456677777777754
Q ss_pred ---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHH----hcCCH
Q 036165 330 ---CNDEAFDTFKEMLSQGFCPTSATISSILPACAS-AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA----KCGFI 401 (566)
Q Consensus 330 ---~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~ 401 (566)
+.+.|+.++.+.-+.| .|+.......+.-... ..+...|.+++..+.+.|..+ .+-.+..+|. -..+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~---A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL---AIYRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH---HHHHHHHHHHhCCCcCCCH
Confidence 5567888888888877 5555554444433333 356778888888888887542 2222333332 23467
Q ss_pred HHHHHHHHhcCCCCh-hHHHHHHH--HHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHH----Hhc----cCChHHHH
Q 036165 402 SEARTLFDKMSERNT-VTWNSMIF--GCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTA----CCH----VGLVELGQ 470 (566)
Q Consensus 402 ~~A~~~~~~~~~~~~-~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~----~~~----~g~~~~a~ 470 (566)
+.|..++.+..+.+. .+...+.. .+.. +.++.+.-.+..+.+.......+-...+.- ... ..+.+.+.
T Consensus 381 ~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~ 459 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAF 459 (552)
T ss_pred HHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHH
Confidence 888888887776542 22222222 2222 666667666666665533333322222211 111 12444555
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhc----CCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 036165 471 RLFNMMQEKYKIMPRTEHYACMVDLLGRA----GRLAEAYEMIKTMSTEPDLFVWGALLGACKNHG----NIELAEIAAK 542 (566)
Q Consensus 471 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g----~~~~A~~~~~ 542 (566)
..+.+.... | +......|.+.|... .+++.|...+.....++ ......+...+ .+| ....|.+.++
T Consensus 460 ~~~~~a~~~-g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~-~~~~~nlg~~~-e~g~g~~~~~~a~~~~~ 533 (552)
T KOG1550|consen 460 SLYSRAAAQ-G---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG-AQALFNLGYMH-EHGEGIKVLHLAKRYYD 533 (552)
T ss_pred HHHHHHHhc-c---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh-hHHHhhhhhHH-hcCcCcchhHHHHHHHH
Confidence 555555443 2 445555666655443 24777777777766444 33333333332 222 2577777777
Q ss_pred HHhhhCCC
Q 036165 543 HLSELEPE 550 (566)
Q Consensus 543 ~~~~~~p~ 550 (566)
++.+.+.+
T Consensus 534 ~~~~~~~~ 541 (552)
T KOG1550|consen 534 QASEEDSR 541 (552)
T ss_pred HHHhcCch
Confidence 77765543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.96 Score=35.35 Aligned_cols=51 Identities=22% Similarity=0.216 Sum_probs=24.9
Q ss_pred HHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 036165 395 YAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEER 445 (566)
Q Consensus 395 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 445 (566)
+...|+++.|++.|.+... .....||.-..++.-+|+.++|++-+++..+.
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 3444555555555544432 23444555555555555555555555554444
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.93 E-value=17 Score=42.99 Aligned_cols=364 Identities=11% Similarity=0.002 Sum_probs=186.7
Q ss_pred HHHHHcccCChhHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCCHHHHHHHHHh-cCCCChhhHHHHHHHHHHcCCh
Q 036165 185 VLKACGHLSDIGTGEKIHSLVLKHSF--GTDAFVVSSLIDMYSKCGSVEKAKKVFDE-MVEKDIVAMNAMVSGYVQRGLA 261 (566)
Q Consensus 185 ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~ 261 (566)
+..+-.+.+.+..|...++.-..... ......+-.+...|...+++|....+... ...++ ...-|......|++
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNW 1465 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccH
Confidence 34444566777777777776311000 11223344445588888888887777663 33332 23345566778999
Q ss_pred hHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHH-HHHHHHhcCChhHHHHHHHH
Q 036165 262 TEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTS-VISGLVHNFCNDEAFDTFKE 340 (566)
Q Consensus 262 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~ 340 (566)
..|...|+.+.+.+ ++...+++-++......|.++......+-.... ..+....|+. =+.+-.+.+++|.......
T Consensus 1466 ~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 99999999988764 333667777777777777777766644444332 2223333333 2344467777777666554
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCc---hHH--HHHHH-----HHHHHhCCC-CcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 036165 341 MLSQGFCPTSATISSILPACASAAN---MRR--GKEIH-----GCAIVMGVE-GDLHVRSALVDMYAKCGFISEARTLFD 409 (566)
Q Consensus 341 m~~~~~~~~~~~~~~ll~~~~~~~~---~~~--a~~~~-----~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 409 (566)
..++ -+-.+. .+.....+..+ +.. ..+.. ..+...+.. .-...|..++....-. +.+.-.+...
T Consensus 1543 -~~n~--e~w~~~-~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~~l~ 1617 (2382)
T KOG0890|consen 1543 -DRNI--EYWSVE-SIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIEELK 1617 (2382)
T ss_pred -cccc--cchhHH-HHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHHHhh
Confidence 1111 111111 02222211111 111 11111 111111111 1123444454444332 2222222222
Q ss_pred hcCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHhhhc--CCC-----CHHHHHHHHHHHhccCChHHHHHHHHHhH
Q 036165 410 KMSE-----RNTVTWNSMIFGCANHGYCDEAIELFNQMEER--KKL-----DHLSFTAVLTACCHVGLVELGQRLFNMMQ 477 (566)
Q Consensus 410 ~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 477 (566)
.... .+..-|..-+.--....+..+-+-.+++..-. ..| -..+|....+.+-+.|.++.|...+-.+.
T Consensus 1618 ~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~ 1697 (2382)
T KOG0890|consen 1618 KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAK 1697 (2382)
T ss_pred ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhh
Confidence 2221 11122332222211111222222222222211 122 23478899999999999999999887777
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCC--------HHHHHHHHHH--------H-HhcCC--HHH
Q 036165 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPD--------LFVWGALLGA--------C-KNHGN--IEL 536 (566)
Q Consensus 478 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~--------~~~~~~l~~~--------~-~~~g~--~~~ 536 (566)
+. + .| ..+--.+.-+...|+-..|+.++++.. ..|+ +..-+..+.. | ...|+ .+.
T Consensus 1698 e~-r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ 1773 (2382)
T KOG0890|consen 1698 ES-R-LP--EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKD 1773 (2382)
T ss_pred hc-c-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHH
Confidence 64 3 33 345556678899999999999998765 1222 2333333322 1 22333 356
Q ss_pred HHHHHHHHhhhCCCCchHHHHHHHHHh
Q 036165 537 AEIAAKHLSELEPESAANNMLLTDLYA 563 (566)
Q Consensus 537 A~~~~~~~~~~~p~~~~~~~~l~~~~~ 563 (566)
.++.|.++.+..|....-|..||..|.
T Consensus 1774 ilk~Y~~~~ail~ewe~~hy~l~~yy~ 1800 (2382)
T KOG0890|consen 1774 ILKYYHDAKAILPEWEDKHYHLGKYYD 1800 (2382)
T ss_pred HHHHHHHHHHHcccccCceeeHHHHHH
Confidence 678888888999977777777775443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.13 Score=29.28 Aligned_cols=31 Identities=19% Similarity=0.076 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC
Q 036165 521 WGALLGACKNHGNIELAEIAAKHLSELEPES 551 (566)
Q Consensus 521 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 551 (566)
+..+..++.+.|++++|...++++++..|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 4556778888999999999999999999874
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.86 E-value=5.4 Score=36.94 Aligned_cols=236 Identities=11% Similarity=0.021 Sum_probs=122.6
Q ss_pred CchHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHHHHHhcCCh----HHHHHHHHHhHHCCCCCCcchHHHHH
Q 036165 111 RLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYH----QEAVTVFHEMHIQGLKQNIFVIPSVL 186 (566)
Q Consensus 111 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~~~~~ll 186 (566)
++..+....+..+...|..+....+..-...+|...-...+.++.+-|+. .++..++..+... .|+...-...+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 45555666666666666543333333333345555555666667776663 4567777666332 34545555555
Q ss_pred HHHcccCChhH--HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcC-ChhH
Q 036165 187 KACGHLSDIGT--GEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG-LATE 263 (566)
Q Consensus 187 ~~~~~~~~~~~--a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~ 263 (566)
.+++..+.... ..+..+.+...-..++..+-...+.++.+.++.+....+..-+..+|...-...+.++.+.+ +...
T Consensus 113 ~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~ 192 (280)
T PRK09687 113 NATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPD 192 (280)
T ss_pred HHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHH
Confidence 55544432110 11122222221123455666666777777776554444444445566666555566666543 2445
Q ss_pred HHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036165 264 ALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLS 343 (566)
Q Consensus 264 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 343 (566)
+...+..+.. .++...-...+.++.+.|+. .+...+-...+.+ + .....+.++...|.. +|+..+..+.+
T Consensus 193 ~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 193 IREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 6665555553 34555555666677777764 3444444433332 1 233455666666664 56666666665
Q ss_pred CCCCCCHHHHHHHHHHH
Q 036165 344 QGFCPTSATISSILPAC 360 (566)
Q Consensus 344 ~~~~~~~~~~~~ll~~~ 360 (566)
. .||..+....+.+|
T Consensus 263 ~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 263 K--FDDNEIITKAIDKL 277 (280)
T ss_pred h--CCChhHHHHHHHHH
Confidence 3 23554444444433
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.69 E-value=3.6 Score=34.33 Aligned_cols=130 Identities=12% Similarity=0.121 Sum_probs=74.7
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHh
Q 036165 300 SKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVM 379 (566)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 379 (566)
.+.++.+.+.++.|+...+..+++.+.+.|++.. +.+++..++-+|+......+-.+.. ....+.++--.|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 3455556667788888888888888888887554 5555666777777666655433332 222233322222221
Q ss_pred -CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 036165 380 -GVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFN 440 (566)
Q Consensus 380 -~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 440 (566)
+ ..+..+++.+...|++-+|.+..+....-+......++.+-.+.++...-..+|+
T Consensus 88 L~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ 144 (167)
T PF07035_consen 88 LG-----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFR 144 (167)
T ss_pred hh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 1244566777777888888887777554333334445555555555444434433
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.65 E-value=5 Score=35.85 Aligned_cols=241 Identities=17% Similarity=0.168 Sum_probs=124.6
Q ss_pred CHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHH---CCC--CCCHHHHHHHHHHHHccCch
Q 036165 295 DQVMVSKLFQLMRAKGVEPD---VVSWTSVISGLVHNFCNDEAFDTFKEMLS---QGF--CPTSATISSILPACASAANM 366 (566)
Q Consensus 295 ~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~--~~~~~~~~~ll~~~~~~~~~ 366 (566)
++++|+.-|.++.+..-+.. -.....+|..+.+.|++++.++.|.+|+. ..+ .-+....+.++...+...+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 45555555555544321111 12334456666777777777777776652 111 23344566666666666666
Q ss_pred HHHHHHHHHHHHh-----CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC------------C---ChhHHHHHHHHH
Q 036165 367 RRGKEIHGCAIVM-----GVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE------------R---NTVTWNSMIFGC 426 (566)
Q Consensus 367 ~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~---~~~~~~~l~~~~ 426 (566)
+....+++.-++. +-..--.+-..|...|...|.+....+++.++.. . -...|..-|..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 5555554433221 1111122334566777777777777777666542 0 123566667777
Q ss_pred HhcCChHHHHHHHHHhhhc--CCCCHHHHHHHHHHH-----hccCChHHHHHHHHHhHHhc---CCCCCh--hHHHHHHH
Q 036165 427 ANHGYCDEAIELFNQMEER--KKLDHLSFTAVLTAC-----CHVGLVELGQRLFNMMQEKY---KIMPRT--EHYACMVD 494 (566)
Q Consensus 427 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~~~---~~~p~~--~~~~~l~~ 494 (566)
..+.+-..-..+|++.... ..|.+... .+|+-| .+.|.+++|..-|=++.+.+ |.+... .-|..|..
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLAN 280 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLAN 280 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHH
Confidence 7777777777777776544 33444333 334433 45678887775444443332 222111 22445556
Q ss_pred HHHhcC----CHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036165 495 LLGRAG----RLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAA 541 (566)
Q Consensus 495 ~~~~~g----~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 541 (566)
++.+.| +-.+|.. ....|.......++.+|... +..+-++++
T Consensus 281 MLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~N-dI~eFE~Il 326 (440)
T KOG1464|consen 281 MLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQNN-DIIEFERIL 326 (440)
T ss_pred HHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhcc-cHHHHHHHH
Confidence 666655 1222211 11246666777888887544 444433333
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.56 E-value=3.1 Score=34.27 Aligned_cols=53 Identities=15% Similarity=-0.049 Sum_probs=29.5
Q ss_pred HhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHh
Q 036165 427 ANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479 (566)
Q Consensus 427 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 479 (566)
.+.++.+++..++..+.-..|.....-..-...+...|++.+|..+|+.+.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 35566777777777666542222222222223345667777777777776543
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.012 Score=48.49 Aligned_cols=129 Identities=12% Similarity=0.089 Sum_probs=85.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHHHHHhcCChHH
Q 036165 83 ERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQE 162 (566)
Q Consensus 83 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 162 (566)
.+++.+...+.+....+.++.++..+...++...+.++..|++.++.+...++++.... .-...++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 45667777888888999999999887777899999999999999988999999884433 333567788888888888
Q ss_pred HHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 036165 163 AVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS 229 (566)
Q Consensus 163 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 229 (566)
|.-++.++.... ..+..+...++++.|.+.... .++..+|..+++.+...+.
T Consensus 89 a~~Ly~~~~~~~---------~al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 89 AVYLYSKLGNHD---------EALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHCCTTHT---------TCSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHcccHH---------HHHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 888887764321 111112344455555433221 2346666666666655443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=93.27 E-value=4.1 Score=42.61 Aligned_cols=47 Identities=30% Similarity=0.238 Sum_probs=32.6
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHccc
Q 036165 144 IHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHL 192 (566)
Q Consensus 144 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 192 (566)
...| .+|-.|.|.|++++|.++..+.... .......+...+..+...
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 3445 5677788999999999998665543 555667788888888665
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.92 E-value=7.8 Score=35.96 Aligned_cols=159 Identities=10% Similarity=-0.034 Sum_probs=82.5
Q ss_pred HHHHHHHHHHccCchHH---HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-C--ChhHHHHHHHH
Q 036165 352 TISSILPACASAANMRR---GKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE-R--NTVTWNSMIFG 425 (566)
Q Consensus 352 ~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~l~~~ 425 (566)
++..++.++...+..+. |..+++.+...... .+.++..-++.+.+.++.+++.+++.+|.. . ....+...+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 45556666666655443 44444455333222 344444455666667788888888877764 1 23345554444
Q ss_pred H---HhcCChHHHHHHHHHhhhc-CCCCHH--H---HHHHHHHHhccC------ChHHHHHHHHHhHHhcCCCCChhHHH
Q 036165 426 C---ANHGYCDEAIELFNQMEER-KKLDHL--S---FTAVLTACCHVG------LVELGQRLFNMMQEKYKIMPRTEHYA 490 (566)
Q Consensus 426 ~---~~~~~~~~A~~~~~~~~~~-~~~~~~--~---~~~l~~~~~~~g------~~~~a~~~~~~~~~~~~~~p~~~~~~ 490 (566)
+ ... ....|...+..+... ..|... . ....+-.....+ ..+...++++.+.+..+.+.+..+-.
T Consensus 165 i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~ 243 (278)
T PF08631_consen 165 IKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS 243 (278)
T ss_pred HHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 4 333 344555555555544 444332 1 111111122221 24555566665544435555555544
Q ss_pred HHH-------HHHHhcCCHHHHHHHHHhc
Q 036165 491 CMV-------DLLGRAGRLAEAYEMIKTM 512 (566)
Q Consensus 491 ~l~-------~~~~~~g~~~~A~~~~~~~ 512 (566)
++. ..+.+.+++++|.++|+-.
T Consensus 244 a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 244 AIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 433 3345778999999999743
|
It is also involved in sporulation []. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.88 E-value=1.9 Score=35.67 Aligned_cols=21 Identities=19% Similarity=0.088 Sum_probs=8.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHh
Q 036165 491 CMVDLLGRAGRLAEAYEMIKT 511 (566)
Q Consensus 491 ~l~~~~~~~g~~~~A~~~~~~ 511 (566)
.|.-+-.+.|++.+|.+.|..
T Consensus 172 ALglAa~kagd~a~A~~~F~q 192 (221)
T COG4649 172 ALGLAAYKAGDFAKAKSWFVQ 192 (221)
T ss_pred HHhHHHHhccchHHHHHHHHH
Confidence 333333444444444444443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.82 E-value=4.9 Score=33.55 Aligned_cols=131 Identities=8% Similarity=0.094 Sum_probs=61.5
Q ss_pred HHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC--CHHHHHHHHHhcC
Q 036165 164 VTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCG--SVEKAKKVFDEMV 241 (566)
Q Consensus 164 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~ 241 (566)
.+.++.+.+.|++|+...+..++..+.+.|++....+ ++..++-+|.......+-.+.... -..-|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 3445555566677777777777777777776544333 333344444333332221111111 1222333333332
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 036165 242 EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM 306 (566)
Q Consensus 242 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 306 (566)
..+..+++.+...|++-+|+++.+...... .++ -..++.+..+.+|...-..+++-.
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~~---~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKVD-SVP---ARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cCC---HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 234455566666677777766666542211 111 123445555555544444444443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.011 Score=48.59 Aligned_cols=84 Identities=15% Similarity=0.168 Sum_probs=52.7
Q ss_pred HHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHH
Q 036165 185 VLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEA 264 (566)
Q Consensus 185 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 264 (566)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..+.+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4556666677777777777777666556677777888888887777777777663322 3334455555666666666
Q ss_pred HHHHHHh
Q 036165 265 LNLVEEI 271 (566)
Q Consensus 265 ~~~~~~m 271 (566)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 6655554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.52 E-value=1.8 Score=36.72 Aligned_cols=88 Identities=14% Similarity=0.017 Sum_probs=54.8
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCHH-----HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHH
Q 036165 423 IFGCANHGYCDEAIELFNQMEERKKLDHL-----SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT-EHYACMVDLL 496 (566)
Q Consensus 423 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~ 496 (566)
..-+...|++++|..-|....+.+++... .|..-..++.+.+.++.|+.-..+.++. .|+. .....-..+|
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel---~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL---NPTYEKALERRAEAY 178 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc---CchhHHHHHHHHHHH
Confidence 34566778888888888888777555332 3444445667777777777777666643 3321 2222234566
Q ss_pred HhcCCHHHHHHHHHhcC
Q 036165 497 GRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 497 ~~~g~~~~A~~~~~~~~ 513 (566)
.+..++++|+.-|+++.
T Consensus 179 ek~ek~eealeDyKki~ 195 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKIL 195 (271)
T ss_pred HhhhhHHHHHHHHHHHH
Confidence 67777777777777766
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.47 E-value=16 Score=39.33 Aligned_cols=115 Identities=11% Similarity=0.158 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHhhhCC---CCccHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHcCCCCChhhHH--
Q 036165 247 AMNAMVSGYVQRGLATEALNLVEEIGTPR---VKPNVVTWNTLISGFSKSGDQ--VMVSKLFQLMRAKGVEPDVVSWT-- 319 (566)
Q Consensus 247 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~-- 319 (566)
-|..|+..|...|..++|+++|.+..... ..-....+-.++..+-+.+.. +...+.-+-..+.........+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 47888899999999999999998886532 011111222233333333332 33443333333221111111111
Q ss_pred ----------HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036165 320 ----------SVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA 361 (566)
Q Consensus 320 ----------~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 361 (566)
..+-.|......+-+..+++.+....-.++..-.+.++..|+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 112235555666666666666665544445555555555443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.22 E-value=1.2 Score=36.56 Aligned_cols=104 Identities=17% Similarity=0.142 Sum_probs=68.6
Q ss_pred HHHHHhccCChHHHHHHHHHhHHhcCCCCChhH-HHHHHHHHHhcCCHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCC
Q 036165 456 VLTACCHVGLVELGQRLFNMMQEKYKIMPRTEH-YACMVDLLGRAGRLAEAYEMIKTMSTE-PDLFVWGALLGACKNHGN 533 (566)
Q Consensus 456 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~ 533 (566)
++..-...++.+++..++..+.- +.|.... -..-+..+.+.|++.+|..+++++... |....-.+|+..|.....
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 33445678899999999999984 4665432 233456688999999999999998743 555555677766655544
Q ss_pred HHHHHHHHHHHhhhCCCCchHHHHHHHHHh
Q 036165 534 IELAEIAAKHLSELEPESAANNMLLTDLYA 563 (566)
Q Consensus 534 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 563 (566)
-..=....+++++..| ++....++..++.
T Consensus 93 D~~Wr~~A~evle~~~-d~~a~~Lv~~Ll~ 121 (160)
T PF09613_consen 93 DPSWRRYADEVLESGA-DPDARALVRALLA 121 (160)
T ss_pred ChHHHHHHHHHHhcCC-ChHHHHHHHHHHH
Confidence 3444445556666555 5555555555444
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.21 E-value=1.6 Score=39.77 Aligned_cols=80 Identities=16% Similarity=0.204 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH----hcCCCCChhHHHH
Q 036165 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE----KYKIMPRTEHYAC 491 (566)
Q Consensus 416 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~~ 491 (566)
..++..++..+...|+.+.+...++++....+-+...|..++.+|...|+...|+..|+.+.+ ..|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345566677777777777777777777777777777777777777777777777777776654 2377777776665
Q ss_pred HHHH
Q 036165 492 MVDL 495 (566)
Q Consensus 492 l~~~ 495 (566)
+...
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5554
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=92.04 E-value=1.3 Score=42.76 Aligned_cols=88 Identities=19% Similarity=0.163 Sum_probs=43.2
Q ss_pred HhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-C-CCHHHHHHHHHHHHhcCCHHHH
Q 036165 460 CCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST-E-PDLFVWGALLGACKNHGNIELA 537 (566)
Q Consensus 460 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~~~~~~l~~~~~~~g~~~~A 537 (566)
....|+++++.+.+...... +.....+..++++...+.|++++|...-+-|.. + .++.+...-.......|-++++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHH
Confidence 34556666665555554432 233344455555555556666666655555541 1 2222222222233444555666
Q ss_pred HHHHHHHhhhCC
Q 036165 538 EIAAKHLSELEP 549 (566)
Q Consensus 538 ~~~~~~~~~~~p 549 (566)
...|++++.++|
T Consensus 411 ~~~wk~~~~~~~ 422 (831)
T PRK15180 411 YHYWKRVLLLNP 422 (831)
T ss_pred HHHHHHHhccCC
Confidence 666666665554
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=91.88 E-value=14 Score=36.49 Aligned_cols=159 Identities=14% Similarity=0.107 Sum_probs=92.0
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHH
Q 036165 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392 (566)
Q Consensus 313 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 392 (566)
.|.....+++..+..+-++.-...+..+|+.-| .+...+..+++.|... ..+.-..+|+.+++..+. +...-..|+
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 355666777777877777788888888887754 5566777777777776 556667777777777665 555555666
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---C---C---hhHHHHHHHHHHhcCChHHHHHHHHHhhhc-C-CCCHHHHHHHHHHHh
Q 036165 393 DMYAKCGFISEARTLFDKMSE---R---N---TVTWNSMIFGCANHGYCDEAIELFNQMEER-K-KLDHLSFTAVLTACC 461 (566)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~~~~---~---~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~ 461 (566)
..|.+ ++...+...|.++.. | + ...|..+...- ..+.+..+.+..++... . ..-...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 66665 677777777766542 1 1 01233332211 22344444444444443 1 112223333334455
Q ss_pred ccCChHHHHHHHHHhHH
Q 036165 462 HVGLVELGQRLFNMMQE 478 (566)
Q Consensus 462 ~~g~~~~a~~~~~~~~~ 478 (566)
...++++|+++++.+.+
T Consensus 217 ~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 217 ENENWTEAIRILKHILE 233 (711)
T ss_pred cccCHHHHHHHHHHHhh
Confidence 55566666666665554
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.70 E-value=9.5 Score=34.17 Aligned_cols=160 Identities=11% Similarity=0.098 Sum_probs=82.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCC-----------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHH
Q 036165 284 NTLISGFSKSGDQVMVSKLFQLMRAKGVEP-----------DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG-FCPTSA 351 (566)
Q Consensus 284 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~ 351 (566)
..+...|...+++.+..++++++....... -...|..=|..|...++-..-..+|++.+... --|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 345666666777777777777665432111 13456666777777777777777787765422 223333
Q ss_pred HHHHHHHHH-----HccCchHHHHHHHHH-HHH---hCCCCcH--hHHHHHHHHHHhcCCHHHHHHHHHhcC------CC
Q 036165 352 TISSILPAC-----ASAANMRRGKEIHGC-AIV---MGVEGDL--HVRSALVDMYAKCGFISEARTLFDKMS------ER 414 (566)
Q Consensus 352 ~~~~ll~~~-----~~~~~~~~a~~~~~~-~~~---~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~ 414 (566)
. ..++.-| .+.|.+++|..-|-+ ... .|-+... --|..|.+++.+.|- .-|+.-. +|
T Consensus 229 I-mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKNdP 302 (440)
T KOG1464|consen 229 I-MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKNDP 302 (440)
T ss_pred H-HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCCCCH
Confidence 3 2333333 456777777643333 322 2322211 123445566655541 1111111 15
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCH
Q 036165 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDH 450 (566)
Q Consensus 415 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 450 (566)
.+...+.|+.+|.. ++..+-+++++.-.+..-.|+
T Consensus 303 EIlAMTnlv~aYQ~-NdI~eFE~Il~~~~~~IM~Dp 337 (440)
T KOG1464|consen 303 EILAMTNLVAAYQN-NDIIEFERILKSNRSNIMDDP 337 (440)
T ss_pred HHHHHHHHHHHHhc-ccHHHHHHHHHhhhccccccH
Confidence 56677777877744 455555555555444433343
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=91.46 E-value=0.5 Score=28.60 Aligned_cols=28 Identities=21% Similarity=0.107 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036165 519 FVWGALLGACKNHGNIELAEIAAKHLSE 546 (566)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (566)
.+++.|...|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566677777777777777777777764
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.39 E-value=3.6 Score=38.01 Aligned_cols=155 Identities=12% Similarity=-0.016 Sum_probs=111.4
Q ss_pred HhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHH----HHHHHHhccCChHH
Q 036165 396 AKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFT----AVLTACCHVGLVEL 468 (566)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~ 468 (566)
.-.|+..+|-..++++.+ .|..++.-.=.+|...|+.+.-...++++...-.++...|. .+.-++...|-+++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 345777788778888775 46777888888999999999999999998877455553333 23335568999999
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---C---CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036165 469 GQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE---P---DLFVWGALLGACKNHGNIELAEIAAK 542 (566)
Q Consensus 469 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---p---~~~~~~~l~~~~~~~g~~~~A~~~~~ 542 (566)
|++.-++..+. -+.|.-.-.++...+.-.|+++++.++..+-... . -...|....-.+...+.++.|.++|+
T Consensus 194 AEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 99999988754 2334444556778888999999999999876521 1 12234444455667799999999998
Q ss_pred HHh--hhCCCCc
Q 036165 543 HLS--ELEPESA 552 (566)
Q Consensus 543 ~~~--~~~p~~~ 552 (566)
+=+ +.+.+|.
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 755 3555555
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.32 E-value=0.3 Score=28.23 Aligned_cols=24 Identities=8% Similarity=0.039 Sum_probs=11.0
Q ss_pred CCCCHHHHHHHHHHHhccCChHHH
Q 036165 446 KKLDHLSFTAVLTACCHVGLVELG 469 (566)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~a 469 (566)
.|.|...|+.+...+...|++++|
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhh
Confidence 344444444444444444444444
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=91.32 E-value=23 Score=37.75 Aligned_cols=189 Identities=17% Similarity=0.064 Sum_probs=106.7
Q ss_pred HHHccCchHHHHHHHHHHHHhCCCCcHh-------HHHHHH-HHHHhcCCHHHHHHHHHhcCC--------CChhHHHHH
Q 036165 359 ACASAANMRRGKEIHGCAIVMGVEGDLH-------VRSALV-DMYAKCGFISEARTLFDKMSE--------RNTVTWNSM 422 (566)
Q Consensus 359 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l 422 (566)
......++.+|..+..++...-..|+.. .++.+- ......|++++|.++.+.... ..+..+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3456788889988888876643332211 222221 223456888998888776553 455667777
Q ss_pred HHHHHhcCChHHHHHHHHHhhhc-CCCCHHH---HHHHH--HHHhccCC--hHHHHHHHHHhHHhcCCC-C----ChhHH
Q 036165 423 IFGCANHGYCDEAIELFNQMEER-KKLDHLS---FTAVL--TACCHVGL--VELGQRLFNMMQEKYKIM-P----RTEHY 489 (566)
Q Consensus 423 ~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~---~~~l~--~~~~~~g~--~~~a~~~~~~~~~~~~~~-p----~~~~~ 489 (566)
..+..-.|++++|..+.++..+. ..-+... |..+. ..+...|. +++....+......+... | -..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 88888899999999988887766 3333333 33332 24556673 344444555444331111 1 12334
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHhcC-CCCCH-HH---HHHHHHHHHhcCCHHHHHHHHHHHhhh
Q 036165 490 ACMVDLLGRA-GRLAEAYEMIKTMS-TEPDL-FV---WGALLGACKNHGNIELAEIAAKHLSEL 547 (566)
Q Consensus 490 ~~l~~~~~~~-g~~~~A~~~~~~~~-~~p~~-~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (566)
..+..++.+. +...+|..-++--. ..|.. .. +..|+......|+.++|...++++...
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4455555541 12222322222221 12221 12 235667788999999999999998864
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.25 E-value=3.9 Score=34.80 Aligned_cols=94 Identities=11% Similarity=0.046 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhc-CCCCH--HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh------hH
Q 036165 418 TWNSMIFGCANHGYCDEAIELFNQMEER-KKLDH--LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT------EH 488 (566)
Q Consensus 418 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~------~~ 488 (566)
.+..+...|.+.|+.++|.+.|.++.+. ..+.. ..+..+++.....+++..+...+.++........|. .+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4555566666666666666666666655 22222 235566666666777777776666665431111111 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 489 YACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 489 ~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
|..| .+...|++.+|-+.|-...
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccC
Confidence 2222 2345678888877776665
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.08 E-value=11 Score=35.10 Aligned_cols=47 Identities=15% Similarity=0.243 Sum_probs=24.6
Q ss_pred HHHHHHHHhHHCCCCCCcchHHHHHHHHcc--cC----ChhHHHHHHHHHHHc
Q 036165 162 EAVTVFHEMHIQGLKQNIFVIPSVLKACGH--LS----DIGTGEKIHSLVLKH 208 (566)
Q Consensus 162 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~ 208 (566)
+.+++++.|.+.|..-+..+|.+....... .. ....+..+|+.|.+.
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 445566666776666666665553333222 11 234455566666554
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.00 E-value=10 Score=33.29 Aligned_cols=16 Identities=13% Similarity=0.144 Sum_probs=8.7
Q ss_pred HccCchHHHHHHHHHH
Q 036165 361 ASAANMRRGKEIHGCA 376 (566)
Q Consensus 361 ~~~~~~~~a~~~~~~~ 376 (566)
.-.+.+++|.+++.+.
T Consensus 25 gg~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERA 40 (288)
T ss_pred CCCcchHHHHHHHHHH
Confidence 3444666666665543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.55 Score=27.53 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=18.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhH
Q 036165 146 RWIALTGAYARRGYHQEAVTVFHEMH 171 (566)
Q Consensus 146 ~~~~li~~~~~~g~~~~A~~~~~~m~ 171 (566)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677777888888888888887744
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.62 E-value=24 Score=36.88 Aligned_cols=34 Identities=18% Similarity=0.351 Sum_probs=21.1
Q ss_pred hcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 036165 498 RAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNI 534 (566)
Q Consensus 498 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 534 (566)
+.++.++|.++.++ ..|...|..|+..+...=.+
T Consensus 673 el~die~AIefvKe---q~D~eLWe~LI~~~ldkPe~ 706 (846)
T KOG2066|consen 673 ELRDIEKAIEFVKE---QDDSELWEDLINYSLDKPEF 706 (846)
T ss_pred HhhCHHHHHHHHHh---cCCHHHHHHHHHHhhcCcHH
Confidence 44455555555543 46888898888776655433
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.17 E-value=5.9 Score=39.74 Aligned_cols=152 Identities=16% Similarity=0.067 Sum_probs=103.6
Q ss_pred hcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 036165 226 KCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQL 305 (566)
Q Consensus 226 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 305 (566)
-.|+++.|..++..+++ ...+.++..+.++|-.++|+++ .+|... -.....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCch---hhhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHh
Confidence 45778877776666652 3445666777778888887764 233221 12334567888988887766
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcH
Q 036165 306 MRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385 (566)
Q Consensus 306 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 385 (566)
.. +..-|..|.++..+.|++..|.+.|..... +..|+-.+...|+-+....+-....+.|..
T Consensus 663 ~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~--- 724 (794)
T KOG0276|consen 663 AN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN--- 724 (794)
T ss_pred hc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc---
Confidence 43 566799999999999999999999887654 456666777777776666666666665543
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 036165 386 HVRSALVDMYAKCGFISEARTLFDKMSE 413 (566)
Q Consensus 386 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 413 (566)
|....+|...|+++++.+++.+-.+
T Consensus 725 ---N~AF~~~~l~g~~~~C~~lLi~t~r 749 (794)
T KOG0276|consen 725 ---NLAFLAYFLSGDYEECLELLISTQR 749 (794)
T ss_pred ---chHHHHHHHcCCHHHHHHHHHhcCc
Confidence 3344566778888888888766543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.06 E-value=5.9 Score=33.74 Aligned_cols=61 Identities=20% Similarity=0.153 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHhhhCCCCcc--HHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036165 247 AMNAMVSGYVQRGLATEALNLVEEIGTPRVKPN--VVTWNTLISGFSKSGDQVMVSKLFQLMR 307 (566)
Q Consensus 247 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 307 (566)
.+..+...|++.|+.++|++.|.++.+....+. ...+-.+++.....+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344455555555555555555555554333322 2234445555555555555555555443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=90.02 E-value=0.58 Score=25.81 Aligned_cols=31 Identities=23% Similarity=0.127 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC
Q 036165 520 VWGALLGACKNHGNIELAEIAAKHLSELEPE 550 (566)
Q Consensus 520 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 550 (566)
.|..+...+...|++++|...++++++..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 5667777788888888888888888887775
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.98 E-value=17 Score=34.03 Aligned_cols=144 Identities=11% Similarity=0.144 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHHHcCCCCchhHHHHHHHHHHh--c----CCHHHHHHHHHhcCCC-------ChhhHHHHHHHHHHcCC-
Q 036165 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSK--C----GSVEKAKKVFDEMVEK-------DIVAMNAMVSGYVQRGL- 260 (566)
Q Consensus 195 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~- 260 (566)
++....+++.+.+.|+.-+..++-+..-.... . -...+|.++|+.|.+. +-.++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45567788889999988887766553333332 2 2367789999999542 33345555433 3333
Q ss_pred ---hhHHHHHHHHhhhCCCCccH--HHHHHHHHHHhcCCC--HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH
Q 036165 261 ---ATEALNLVEEIGTPRVKPNV--VTWNTLISGFSKSGD--QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333 (566)
Q Consensus 261 ---~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 333 (566)
.+.+..+|+.+.+.|...+. .....++..+....+ ...+.++++.+.+.|+++....|..+.-...-.+..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 35566778888877766543 344445544443333 34788888999999999888887766543333333324
Q ss_pred HHHHHHH
Q 036165 334 AFDTFKE 340 (566)
Q Consensus 334 A~~~~~~ 340 (566)
....+.+
T Consensus 236 ~~~~i~e 242 (297)
T PF13170_consen 236 IVEEIKE 242 (297)
T ss_pred HHHHHHH
Confidence 4333333
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.89 E-value=17 Score=37.75 Aligned_cols=39 Identities=15% Similarity=0.102 Sum_probs=30.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHH
Q 036165 524 LLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLY 562 (566)
Q Consensus 524 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 562 (566)
.+.+-.-.+++.+|.++.+.|.+++|...-....+.+|+
T Consensus 372 y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~meni~ 410 (1226)
T KOG4279|consen 372 YFEASVLANDYQKAIQAAEMMFKLKPPVWYLKSTMENIL 410 (1226)
T ss_pred hhhhhhhccCHHHHHHHHHHHhccCCceehHHHHHHHHH
Confidence 344556778999999999999999998877777666654
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.58 E-value=54 Score=39.31 Aligned_cols=153 Identities=11% Similarity=-0.017 Sum_probs=92.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHhhhCCC--CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 036165 250 AMVSGYVQRGLATEALNLVEEIGTPRV--KPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327 (566)
Q Consensus 250 ~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 327 (566)
++..+-.+.+.+.+|+..++.-..... .....-|..+...|+..++++....+...... +. .....|.-...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~-sl~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DP-SLYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Cc-cHHHHHHHHHh
Confidence 455566778889999988888321111 12233445555689999999988777664111 11 23344555778
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 036165 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407 (566)
Q Consensus 328 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 407 (566)
.|++..|...|+.+.+.+ ++...+++.++......+.++......+-......+-....++.=+.+--+.++++.....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 899999999999998764 3346677777777777777776665444433322111122222233444566666666555
Q ss_pred HH
Q 036165 408 FD 409 (566)
Q Consensus 408 ~~ 409 (566)
..
T Consensus 1541 l~ 1542 (2382)
T KOG0890|consen 1541 LS 1542 (2382)
T ss_pred hh
Confidence 44
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.35 E-value=3.2 Score=37.94 Aligned_cols=76 Identities=13% Similarity=0.221 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCChhHHHHHHHHhhh-----CCCCccHHHHHH
Q 036165 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVEK---DIVAMNAMVSGYVQRGLATEALNLVEEIGT-----PRVKPNVVTWNT 285 (566)
Q Consensus 214 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~ 285 (566)
..++..++..+...|+.+.+.+.++++... +...|..+|.+|.+.|+...|+..|+.+.. .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345666788888888888888888888543 566788888888888888888888887754 566666665544
Q ss_pred HHHH
Q 036165 286 LISG 289 (566)
Q Consensus 286 ll~~ 289 (566)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.61 E-value=13 Score=31.00 Aligned_cols=127 Identities=16% Similarity=0.166 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC--HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChh-HHHHH--
Q 036165 418 TWNSMIFGCANHGYCDEAIELFNQMEERKKLD--HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTE-HYACM-- 492 (566)
Q Consensus 418 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l-- 492 (566)
.|..-+. +.+.+..++|+.-|..+.+....+ ....-.........|+...|...|+++-.. .-.|-.. -...|
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlra 138 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHH
Confidence 4443333 345677888888888887762222 222333344567888999999999998765 2223221 11111
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036165 493 VDLLGRAGRLAEAYEMIKTMSTE--P-DLFVWGALLGACKNHGNIELAEIAAKHLSE 546 (566)
Q Consensus 493 ~~~~~~~g~~~~A~~~~~~~~~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (566)
...+...|.+++.....+-+... | -...-.+|.-+-.+.|++.+|...|+.+..
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 23456789999988888776633 2 234456777788899999999999999886
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=88.31 E-value=28 Score=34.49 Aligned_cols=57 Identities=14% Similarity=0.088 Sum_probs=37.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCC--CHHHHHHHHHHHhccCChHHHHHHHHHhH
Q 036165 421 SMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTACCHVGLVELGQRLFNMMQ 477 (566)
Q Consensus 421 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 477 (566)
.+..++-+.|+.++|++.+++|.+..+. +......|+.++...+.+.++..++.+.-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3455555677777777777777665333 33456677777777777777777777653
|
The molecular function of this protein is uncertain. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.29 E-value=6.2 Score=39.61 Aligned_cols=151 Identities=13% Similarity=0.055 Sum_probs=96.3
Q ss_pred HhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 036165 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234 (566)
Q Consensus 155 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 234 (566)
.-.|+++.|..++.... ...-+.+...+.++|-.++|.++ .+|..- -.....+.|+++.|.
T Consensus 597 vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~ 657 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAF 657 (794)
T ss_pred hhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHH
Confidence 44677777776655442 22334455555566666655544 222221 123345678888887
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC
Q 036165 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD 314 (566)
Q Consensus 235 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 314 (566)
++..+. .+..-|..|.++..+.+++..|.+.|.+... |..|+-.+...|+-+....+-....+.|.. |
T Consensus 658 ~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N 725 (794)
T KOG0276|consen 658 DLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N 725 (794)
T ss_pred HHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c
Confidence 776554 3566788899999999999999988887654 445666777778877666666666666532 2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHH
Q 036165 315 VVSWTSVISGLVHNFCNDEAFDTFKEM 341 (566)
Q Consensus 315 ~~~~~~li~~~~~~g~~~~A~~~~~~m 341 (566)
.-..+|...|+++++.+++..-
T Consensus 726 -----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 726 -----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred -----hHHHHHHHcCCHHHHHHHHHhc
Confidence 2234577788888888887654
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.13 E-value=17 Score=31.65 Aligned_cols=176 Identities=13% Similarity=-0.001 Sum_probs=83.5
Q ss_pred cCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh-HHHHHHH--HHHhcCChHHHHHHH
Q 036165 363 AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTV-TWNSMIF--GCANHGYCDEAIELF 439 (566)
Q Consensus 363 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~--~~~~~~~~~~A~~~~ 439 (566)
.|-...|+-=|.+.....+. -+.+||.+.--+...|+++.|.+.|+...+-|+. -|..+=+ ++--.|++.-|.+-+
T Consensus 78 lGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 78 LGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHH
Confidence 34444444444444433222 3567777777777788888888888777763321 2222222 222356777777666
Q ss_pred HHhhhcCCCCHH--HHHHHHHHHhccCChHHHHH-HHHHhHHhcCCCCChhHHHH-HHHHHHhcCCHHHHHHHHHhcCCC
Q 036165 440 NQMEERKKLDHL--SFTAVLTACCHVGLVELGQR-LFNMMQEKYKIMPRTEHYAC-MVDLLGRAGRLAEAYEMIKTMSTE 515 (566)
Q Consensus 440 ~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~ 515 (566)
.+.-+..+.|+. .|..+.. ..-++.+|.. +.++.. |. |..-|.. ++..|.-.=..+.+.+-...-...
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~---~~--d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~ 228 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE---KS--DKEQWGWNIVEFYLGKISEETLMERLKADATD 228 (297)
T ss_pred HHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH---hc--cHhhhhHHHHHHHHhhccHHHHHHHHHhhccc
Confidence 666555443332 2333322 1223444443 333333 22 3233332 222222111122222222211100
Q ss_pred ------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Q 036165 516 ------PDLFVWGALLGACKNHGNIELAEIAAKHLSEL 547 (566)
Q Consensus 516 ------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (566)
-=..||--+..-+...|+.++|..+|+-++..
T Consensus 229 n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 229 NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 11345566666667777777777777766653
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.09 E-value=17 Score=31.63 Aligned_cols=160 Identities=12% Similarity=-0.016 Sum_probs=87.7
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCC-CCchhHHHHHHH
Q 036165 144 IHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF-GTDAFVVSSLID 222 (566)
Q Consensus 144 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~ 222 (566)
+..||.+.--+...|+++.|.+.|+...+.+..-+-...|.-|. +--.|++..|.+=+...-+... .|-...|--
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY--- 174 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY--- 174 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcCCCChHHHHHHH---
Confidence 45789999889999999999999999988654433333333333 2356888888877776665431 121222222
Q ss_pred HHHhcCCHHHHHHH-HHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCC------CccHHHHHHHHHHHhcCCC
Q 036165 223 MYSKCGSVEKAKKV-FDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRV------KPNVVTWNTLISGFSKSGD 295 (566)
Q Consensus 223 ~~~~~g~~~~A~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~------~p~~~~~~~ll~~~~~~~~ 295 (566)
.--..-++.+|..- .++....|..-|...|-.+.-.+-.++ .+++++....- ..=..||--+...+...|+
T Consensus 175 l~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e--~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 175 LNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEE--TLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred HHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHH--HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 22233455666543 344455555556555544443322222 12222222110 0112455556666666677
Q ss_pred HHHHHHHHHHHHHc
Q 036165 296 QVMVSKLFQLMRAK 309 (566)
Q Consensus 296 ~~~a~~~~~~~~~~ 309 (566)
.++|..+|+-.+..
T Consensus 253 ~~~A~~LfKLaian 266 (297)
T COG4785 253 LDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHHHH
Confidence 77776666665543
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=87.42 E-value=42 Score=35.45 Aligned_cols=52 Identities=13% Similarity=-0.154 Sum_probs=37.6
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036165 493 VDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544 (566)
Q Consensus 493 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 544 (566)
+..+...|...+|...+..+....+......+.....+.|.++.++....+.
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 4556677888888888877765566666666767677888888887766544
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.22 E-value=3.8 Score=33.17 Aligned_cols=94 Identities=15% Similarity=0.129 Sum_probs=57.5
Q ss_pred HHHHHHH---HHhccCChHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHhcCCCC-CHHHHHHHHH
Q 036165 452 SFTAVLT---ACCHVGLVELGQRLFNMMQEKYKIMPRTE-HYACMVDLLGRAGRLAEAYEMIKTMSTEP-DLFVWGALLG 526 (566)
Q Consensus 452 ~~~~l~~---~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~ 526 (566)
..+.|+. .-...++.+++..+++.+.- +.|+.. .-..-+..+...|++++|.+++++....+ ...--..|..
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A 85 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLA 85 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHH
Confidence 3444444 33468999999999999984 456542 22334566889999999999999998543 4333445554
Q ss_pred HHH-hcCCHHHHHHHHHHHhhhCC
Q 036165 527 ACK-NHGNIELAEIAAKHLSELEP 549 (566)
Q Consensus 527 ~~~-~~g~~~~A~~~~~~~~~~~p 549 (566)
.|. -.||.+ =...-..+++.++
T Consensus 86 ~CL~al~Dp~-Wr~~A~~~le~~~ 108 (153)
T TIGR02561 86 LCLNAKGDAE-WHVHADEVLARDA 108 (153)
T ss_pred HHHHhcCChH-HHHHHHHHHHhCC
Confidence 444 344432 2333344445443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.00 E-value=1.9 Score=42.87 Aligned_cols=98 Identities=15% Similarity=0.066 Sum_probs=76.5
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 036165 462 HVGLVELGQRLFNMMQEKYKIMPR--TEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELA 537 (566)
Q Consensus 462 ~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A 537 (566)
..|+...|.+.+..+... .|. ......|...+.+.|...+|-.++.+.. ..-.+.++..+.+++....+.++|
T Consensus 619 ~~gn~~~a~~cl~~a~~~---~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNL---APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhcc---ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 468888999888877643 332 2345567788888888889988887765 334567788899999999999999
Q ss_pred HHHHHHHhhhCCCCchHHHHHHHHH
Q 036165 538 EIAAKHLSELEPESAANNMLLTDLY 562 (566)
Q Consensus 538 ~~~~~~~~~~~p~~~~~~~~l~~~~ 562 (566)
++.++++++..|+++..-..|-.|-
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHH
Confidence 9999999999999998877766553
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=86.84 E-value=25 Score=32.22 Aligned_cols=83 Identities=19% Similarity=0.236 Sum_probs=48.6
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc
Q 036165 383 GDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCH 462 (566)
Q Consensus 383 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 462 (566)
.++.....+...|.+.|++.+|+..|-...+++...+..++......|...++--.+-+ .+--|..
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~R--------------aVL~yL~ 153 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIAR--------------AVLQYLC 153 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHH--------------HHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHH--------------HHHHHHH
Confidence 46788889999999999999999888655444444443344433334443333222111 2223556
Q ss_pred cCChHHHHHHHHHhHHh
Q 036165 463 VGLVELGQRLFNMMQEK 479 (566)
Q Consensus 463 ~g~~~~a~~~~~~~~~~ 479 (566)
.++...|...++...+.
T Consensus 154 l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 154 LGNLRDANELFDTFTSK 170 (260)
T ss_dssp TTBHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHH
Confidence 77888888887777654
|
; PDB: 3LKU_E 2WPV_G. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=86.72 E-value=5.4 Score=33.52 Aligned_cols=26 Identities=15% Similarity=0.100 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhhhCCCCchHHHHHH
Q 036165 534 IELAEIAAKHLSELEPESAANNMLLT 559 (566)
Q Consensus 534 ~~~A~~~~~~~~~~~p~~~~~~~~l~ 559 (566)
+++|...|+++.+.+|+|..+...|-
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 56677777777778888877665553
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.71 E-value=43 Score=34.78 Aligned_cols=174 Identities=10% Similarity=0.041 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHH----H-HHhcCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHcc
Q 036165 296 QVMVSKLFQLMRAKGVEPDVVSWTSVIS----G-LVHNFCNDEAFDTFKEMLS-------QGFCPTSATISSILPACASA 363 (566)
Q Consensus 296 ~~~a~~~~~~~~~~~~~~~~~~~~~li~----~-~~~~g~~~~A~~~~~~m~~-------~~~~~~~~~~~~ll~~~~~~ 363 (566)
...+.++++...+.|.. .....+.. + +....+.+.|+..|+...+ .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~~---~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS---EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcch---HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 45677777777766522 22222222 2 3345677888888887766 44 222334444444443
Q ss_pred C-----chHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc---CCHHHHHHHHHhcCC-CChhHHHHHHHHHH----hcC
Q 036165 364 A-----NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC---GFISEARTLFDKMSE-RNTVTWNSMIFGCA----NHG 430 (566)
Q Consensus 364 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~----~~~ 430 (566)
. +.+.|..++.+..+.|.+ +.... +..+|... .+...|.++|....+ ..+..+-.+..+|. ...
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNP-DAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVER 378 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCc-hHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCC
Confidence 2 455566666666666543 32222 22222221 245566666665543 22222222222222 122
Q ss_pred ChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHh
Q 036165 431 YCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479 (566)
Q Consensus 431 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 479 (566)
+.+.|..++++.-+...|...--...+..+.. ++++.+.-.+..+.+.
T Consensus 379 ~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL 426 (552)
T ss_pred CHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh
Confidence 45566666666655543332222222333333 5555555554444443
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.36 E-value=22 Score=31.05 Aligned_cols=124 Identities=18% Similarity=0.162 Sum_probs=78.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----hhHHHHHHH
Q 036165 419 WNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR----TEHYACMVD 494 (566)
Q Consensus 419 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~ 494 (566)
.+.-++.+.+.+...+++...++-.+..+.|..+-..++..++-.|++++|..-++-+-. +.|+ ...|..++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHHHHH
Confidence 344566777888889999888887777777888888899999999999999877776653 3443 455555554
Q ss_pred HHHhcCCHHHHH-HHHHhcCCCC-----CHHHHHHHH-HHHH--hcCCHHHHHHHHHHHhhhCCCCch
Q 036165 495 LLGRAGRLAEAY-EMIKTMSTEP-----DLFVWGALL-GACK--NHGNIELAEIAAKHLSELEPESAA 553 (566)
Q Consensus 495 ~~~~~g~~~~A~-~~~~~~~~~p-----~~~~~~~l~-~~~~--~~g~~~~A~~~~~~~~~~~p~~~~ 553 (566)
+- .+. ++|.--. .| +...|...+ .+.. ..|.-+.+..+-+.+++..|..+.
T Consensus 81 ~e-------a~R~evfag~~-~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 81 CE-------AARNEVFAGGA-VPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred HH-------HHHHHHhccCC-CCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 32 222 2333222 11 234454444 3332 334556677777788887776543
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.95 E-value=5.5 Score=36.92 Aligned_cols=91 Identities=15% Similarity=0.081 Sum_probs=60.5
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHH
Q 036165 392 VDMYAKCGFISEARTLFDKMSE--R-NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVEL 468 (566)
Q Consensus 392 ~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 468 (566)
.+-|.++|.+++|+..|.+... | |.+++..-..+|.+...+..|+.-..........-...|..-+.+-...|+..+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 4557788888888888887664 5 777777777888888877777766665554433333345555555555666677
Q ss_pred HHHHHHHhHHhcCCCCC
Q 036165 469 GQRLFNMMQEKYKIMPR 485 (566)
Q Consensus 469 a~~~~~~~~~~~~~~p~ 485 (566)
|.+-++.+.+ ++|+
T Consensus 184 AKkD~E~vL~---LEP~ 197 (536)
T KOG4648|consen 184 AKKDCETVLA---LEPK 197 (536)
T ss_pred HHHhHHHHHh---hCcc
Confidence 7766666653 4555
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.83 E-value=8.1 Score=35.48 Aligned_cols=101 Identities=11% Similarity=0.153 Sum_probs=68.0
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CCh-----hhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHH
Q 036165 208 HSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE-KDI-----VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVV 281 (566)
Q Consensus 208 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 281 (566)
.|.+.+..+...++..-....++++++..+-++.. ++. .+-.+.++ ++-.-+.++++.++..=..-|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~ir-lllky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHH-HHHccChHHHHHHHhCcchhccccchh
Confidence 34555666666677766667788888887777743 211 11112222 233345668888888777888888888
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036165 282 TWNTLISGFSKSGDQVMVSKLFQLMRAK 309 (566)
Q Consensus 282 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 309 (566)
+++.+|..+.+.+++..|..+.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888888877776544
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=85.13 E-value=32 Score=31.92 Aligned_cols=23 Identities=9% Similarity=0.065 Sum_probs=10.7
Q ss_pred HHHHHHhccCChHHHHHHHHHhHH
Q 036165 455 AVLTACCHVGLVELGQRLFNMMQE 478 (566)
Q Consensus 455 ~l~~~~~~~g~~~~a~~~~~~~~~ 478 (566)
..+.++...|+. +|...+..+.+
T Consensus 240 ~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 240 LIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHHhcCCH-hHHHHHHHHHh
Confidence 344444555542 44555554443
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=85.11 E-value=17 Score=33.20 Aligned_cols=112 Identities=10% Similarity=0.191 Sum_probs=63.9
Q ss_pred hHHHHHHHHHhh--hcCCCCHHHHHHHHHHHhc-cC-ChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 036165 432 CDEAIELFNQME--ERKKLDHLSFTAVLTACCH-VG-LVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYE 507 (566)
Q Consensus 432 ~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~-~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 507 (566)
..+|+++|+... +..-.|......+++.... .+ ....--++.+-+...++-.++..+....++.+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 344555555221 1133455555555554443 11 2233334444444444556666677777777777777777777
Q ss_pred HHHhcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036165 508 MIKTMST----EPDLFVWGALLGACKNHGNIELAEIAAKH 543 (566)
Q Consensus 508 ~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 543 (566)
+++.... ..|...|..++..-...||..-...+.+.
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 7776551 24666777777777777777666555544
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.09 E-value=23 Score=30.28 Aligned_cols=89 Identities=13% Similarity=0.000 Sum_probs=51.9
Q ss_pred HHHHHccCchHHHHHHHHHHHHhCCCCc--HhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhH--HHHHHHHHHhcCCh
Q 036165 357 LPACASAANMRRGKEIHGCAIVMGVEGD--LHVRSALVDMYAKCGFISEARTLFDKMSERNTVT--WNSMIFGCANHGYC 432 (566)
Q Consensus 357 l~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~~ 432 (566)
...+...++++.|...++.........+ ..+--.|.......|.+++|...++....++-.. ...-...+...|+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k 175 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCch
Confidence 3455666777777766666554321111 1122235556667777777777777766654332 23334566777777
Q ss_pred HHHHHHHHHhhhc
Q 036165 433 DEAIELFNQMEER 445 (566)
Q Consensus 433 ~~A~~~~~~~~~~ 445 (566)
++|..-|++....
T Consensus 176 ~~Ar~ay~kAl~~ 188 (207)
T COG2976 176 QEARAAYEKALES 188 (207)
T ss_pred HHHHHHHHHHHHc
Confidence 7777777776665
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=85.06 E-value=59 Score=34.86 Aligned_cols=222 Identities=12% Similarity=0.009 Sum_probs=121.6
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCCh-------hhHHHHHH-HHHhcCChhHHHHHHHHHHHCC----CCCCHHHHHHHH
Q 036165 290 FSKSGDQVMVSKLFQLMRAKGVEPDV-------VSWTSVIS-GLVHNFCNDEAFDTFKEMLSQG----FCPTSATISSIL 357 (566)
Q Consensus 290 ~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~----~~~~~~~~~~ll 357 (566)
.....++.+|..++.++...-..|+. ..|+.+-. .....|++++|+++.+...+.= ..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567889999998887654223221 13443332 2345788999999888877541 223344566667
Q ss_pred HHHHccCchHHHHHHHHHHHHhCCCCcHhHHH---HH--HHHHHhcCC--HHHHHHHHHhcCC-----C-----ChhHHH
Q 036165 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRS---AL--VDMYAKCGF--ISEARTLFDKMSE-----R-----NTVTWN 420 (566)
Q Consensus 358 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l--~~~~~~~g~--~~~A~~~~~~~~~-----~-----~~~~~~ 420 (566)
.+..-.|+++.|..+.....+..-..+...+. .+ ...+...|+ ..+....|..... . -..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 77888899999998887776643223333332 22 233455663 3333333433321 1 223344
Q ss_pred HHHHHHHhc-CChHHHHHHHHHhhhcCCCCHH----HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----hhHHHH
Q 036165 421 SMIFGCANH-GYCDEAIELFNQMEERKKLDHL----SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR----TEHYAC 491 (566)
Q Consensus 421 ~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 491 (566)
.+..++.+. +...++..-++--.. ..|... .+..|+......|++++|...++++... ...+. ......
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~-~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l-~~~~~~~~~~~a~~~ 662 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSV-YTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL-LLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhh-cccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-hcCCCCCchHHHHHH
Confidence 444555442 122222222222222 222222 2336677888899999999999888765 33332 112222
Q ss_pred HHH--HHHhcCCHHHHHHHHHhcC
Q 036165 492 MVD--LLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 492 l~~--~~~~~g~~~~A~~~~~~~~ 513 (566)
.+. .-...|+.++|.....+-.
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHhcc
Confidence 222 2346788888887777643
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.89 E-value=34 Score=31.99 Aligned_cols=152 Identities=12% Similarity=0.013 Sum_probs=105.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHh---CCCCcHhHHHHHHHHHHhcCCH
Q 036165 325 LVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVM---GVEGDLHVRSALVDMYAKCGFI 401 (566)
Q Consensus 325 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~ 401 (566)
...+|+..+|-..++++++. .+.|...+...=.+|...|+.+.....++++... +++....+...+.-++..+|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 44578888888888888875 4666677777777888888888888888877653 2222333344555566789999
Q ss_pred HHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhc-CCCCH---HHHHHHHHHHhccCChHHHHHHHH
Q 036165 402 SEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDH---LSFTAVLTACCHVGLVELGQRLFN 474 (566)
Q Consensus 402 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~ 474 (566)
++|++.-++..+ .|..+-.+....+...|++.++.+...+-... ...+. ..|-...-.+...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 999999988776 34445566667777789999998887776554 21111 223334445566789999999987
Q ss_pred HhH
Q 036165 475 MMQ 477 (566)
Q Consensus 475 ~~~ 477 (566)
.=+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 643
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=84.89 E-value=44 Score=33.28 Aligned_cols=176 Identities=11% Similarity=0.060 Sum_probs=112.8
Q ss_pred CCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHH
Q 036165 347 CPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMI 423 (566)
Q Consensus 347 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~ 423 (566)
..|..-+.+++..+.......-.+.+-.++...|- +...+..++.+|... ..+.-..+++++.+ .|++.-..|.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 45666677777777777777777777777777653 456677778888777 55666677776554 3444444444
Q ss_pred HHHHhcCChHHHHHHHHHhhhcCCC---CH---HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 036165 424 FGCANHGYCDEAIELFNQMEERKKL---DH---LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLG 497 (566)
Q Consensus 424 ~~~~~~~~~~~A~~~~~~~~~~~~~---~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 497 (566)
.-|.+ ++.+.+...|.++.....| +. ..|.-+... -..+.+....+...+....|...-...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 44444 7778888888888777333 11 134444432 145667777777777766565555556666667777
Q ss_pred hcCCHHHHHHHHHhcCC--CCCHHHHHHHHHHH
Q 036165 498 RAGRLAEAYEMIKTMST--EPDLFVWGALLGAC 528 (566)
Q Consensus 498 ~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~ 528 (566)
...++++|.+++..+.. +.|......++.-+
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 78888888888887762 34454545555443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.88 E-value=3 Score=23.70 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=11.2
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhH
Q 036165 453 FTAVLTACCHVGLVELGQRLFNMMQ 477 (566)
Q Consensus 453 ~~~l~~~~~~~g~~~~a~~~~~~~~ 477 (566)
|..+..++...|++++|+..|++++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH
Confidence 4444444444444444444444444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=84.19 E-value=11 Score=34.66 Aligned_cols=69 Identities=12% Similarity=-0.006 Sum_probs=48.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHH
Q 036165 490 ACMVDLLGRAGRLAEAYEMIKTMS-T-EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLL 558 (566)
Q Consensus 490 ~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 558 (566)
+.+-.+|.+.++++.|+++.+.+. . +.++.-+..-.-.|.+.|.+..|..-++..++.-|++|.+-..-
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik 255 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIR 255 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence 345566777788888888877776 2 33455666666667788888888888888888778777765543
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.82 E-value=10 Score=34.94 Aligned_cols=101 Identities=11% Similarity=0.106 Sum_probs=64.7
Q ss_pred CCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC-CCc-----chHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcch
Q 036165 108 GLARLTQIATKLITFYTECQNIHHARMLFDEIPK-TNI-----HRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFV 181 (566)
Q Consensus 108 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 181 (566)
|.+....+...++..-....+++++...+-++.. ++. .+-.+.++.+ -.-++++++.++..=.+.|+-||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 4334444444455555555677777776655543 211 1111223333 33467788888888888888888888
Q ss_pred HHHHHHHHcccCChhHHHHHHHHHHHcC
Q 036165 182 IPSVLKACGHLSDIGTGEKIHSLVLKHS 209 (566)
Q Consensus 182 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g 209 (566)
++.+|+.+.+.+++..|.++.-.|+...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 8888888888888888888877776654
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=83.55 E-value=9 Score=28.67 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=34.0
Q ss_pred HHHHHHHHhhhc-CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036165 434 EAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVD 494 (566)
Q Consensus 434 ~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 494 (566)
+..+-+..+... ..|++....+.+++|-+.+++..|.++++.++.+-| +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 344445555554 667777777777777777777777777777776533 22335655543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.28 E-value=3.7 Score=23.20 Aligned_cols=24 Identities=17% Similarity=0.061 Sum_probs=10.3
Q ss_pred HHHHHHHhccCChHHHHHHHHHhH
Q 036165 454 TAVLTACCHVGLVELGQRLFNMMQ 477 (566)
Q Consensus 454 ~~l~~~~~~~g~~~~a~~~~~~~~ 477 (566)
..+..++...|++++|++.+++..
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 334444444444444444444444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=83.27 E-value=37 Score=31.18 Aligned_cols=113 Identities=12% Similarity=0.166 Sum_probs=65.7
Q ss_pred CChHHHHHHHHHhHH-CCCCCCcchHHHHHHHHcc-cC-ChhHHHHHHHHHHH-cCCCCchhHHHHHHHHHHhcCCHHHH
Q 036165 158 GYHQEAVTVFHEMHI-QGLKQNIFVIPSVLKACGH-LS-DIGTGEKIHSLVLK-HSFGTDAFVVSSLIDMYSKCGSVEKA 233 (566)
Q Consensus 158 g~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~-~g~~~~~~~~~~l~~~~~~~g~~~~A 233 (566)
....+|+++|+.... ..+--|..+...+++.... .+ ....--++.+.+.. .|-.++..+...++..++..+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 334556666553221 1233455555555555433 11 23333344444432 23356666777778888888888888
Q ss_pred HHHHHhcCC-----CChhhHHHHHHHHHHcCChhHHHHHHHH
Q 036165 234 KKVFDEMVE-----KDIVAMNAMVSGYVQRGLATEALNLVEE 270 (566)
Q Consensus 234 ~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~ 270 (566)
.++++.... .|...|..+|....+.|+..-...++++
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 888777632 3667788888888888887666665554
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=83.21 E-value=2.3 Score=22.63 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=9.5
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 036165 491 CMVDLLGRAGRLAEAYEMIK 510 (566)
Q Consensus 491 ~l~~~~~~~g~~~~A~~~~~ 510 (566)
.+..++...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34444455555555544443
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=83.08 E-value=8.5 Score=28.46 Aligned_cols=58 Identities=21% Similarity=0.265 Sum_probs=36.8
Q ss_pred HHHHHHHHhhhc-CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 036165 434 EAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMV 493 (566)
Q Consensus 434 ~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 493 (566)
++.+-+..+... ..|++....+.+++|-+.+|+..|.++++.++.+.| .+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHH
Confidence 444455555555 677777777777777777777777777777765422 2334555544
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.80 E-value=49 Score=32.26 Aligned_cols=71 Identities=14% Similarity=0.188 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHh
Q 036165 388 RSALVDMYAKCGFISEARTLFDKMSER---NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACC 461 (566)
Q Consensus 388 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 461 (566)
...|+.-|...|++.+|.+.++++.-| ..+.+.+++.+.-+.|+....+.+++..... ...|-+.+-++|.
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s---glIT~nQMtkGf~ 585 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS---GLITTNQMTKGFE 585 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc---CceeHHHhhhhhh
Confidence 455778888888888888888877654 3456777888888888777666666665443 3334444444443
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=82.71 E-value=49 Score=32.16 Aligned_cols=165 Identities=19% Similarity=0.205 Sum_probs=98.1
Q ss_pred cCCHHHHHHHHHhcCC----CChhHHHHHHHHH-HhcCChHHHHHHHHHhhhcCCCCH---HHHHHHHHHHhccCChHHH
Q 036165 398 CGFISEARTLFDKMSE----RNTVTWNSMIFGC-ANHGYCDEAIELFNQMEERKKLDH---LSFTAVLTACCHVGLVELG 469 (566)
Q Consensus 398 ~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a 469 (566)
.|+.+++.+.+..+.. +....+-.|+.+- ....++.+|+++|+...-..|-+. ...---+-.....|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 5788888888877764 3444565665543 345678888888887765433322 2333344456678888888
Q ss_pred HHHHHHhHHhcCCCCChhHHH-HHHHHHHhcC---CHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036165 470 QRLFNMMQEKYKIMPRTEHYA-CMVDLLGRAG---RLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLS 545 (566)
Q Consensus 470 ~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 545 (566)
..+-.+...+|...|=...|. .++.++.+.+ +.+.-..++..|...-....|..+.+.-.-.|+.+-|...-++++
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~ 284 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERAL 284 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 777777776654444332222 2333333333 334445555555422335677777788888888888888888888
Q ss_pred hhCCCCchHHHHHHHHHh
Q 036165 546 ELEPESAANNMLLTDLYA 563 (566)
Q Consensus 546 ~~~p~~~~~~~~l~~~~~ 563 (566)
.+.+ ....-...+.+|.
T Consensus 285 ~L~~-~~~~~~~ra~LY~ 301 (421)
T PRK12798 285 KLAD-PDSADAARARLYR 301 (421)
T ss_pred Hhcc-CCCcchHHHHHHH
Confidence 7653 2333444445543
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=82.55 E-value=23 Score=28.24 Aligned_cols=79 Identities=11% Similarity=-0.018 Sum_probs=51.1
Q ss_pred CCChhHHHHHHHHHHhcCCHHH---HHHHHHhcCC--CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHH
Q 036165 483 MPRTEHYACMVDLLGRAGRLAE---AYEMIKTMST--EP--DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANN 555 (566)
Q Consensus 483 ~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~--~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 555 (566)
.++..+--.+.+++.+..+.++ -..++++... .| ......-|.-++.+.|+++++.++.+..++.+|+|..+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 4555566667777777665443 4556665542 22 222334445667888888888888888888888888776
Q ss_pred HHHHHH
Q 036165 556 MLLTDL 561 (566)
Q Consensus 556 ~~l~~~ 561 (566)
.+=-.|
T Consensus 109 ~Lk~~i 114 (149)
T KOG3364|consen 109 ELKETI 114 (149)
T ss_pred HHHHHH
Confidence 654443
|
|
| >PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A | Back alignment and domain information |
|---|
Probab=82.54 E-value=7.7 Score=31.43 Aligned_cols=62 Identities=18% Similarity=0.114 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 502 LAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 502 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
-+.|.++.+-|. ...............|+++-|.++.+.++..+|+|..+....+++|.+.|
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 355666666664 44555556666788999999999999999999999999999999987653
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=81.75 E-value=3.9 Score=22.72 Aligned_cols=30 Identities=23% Similarity=0.207 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHhhhCCCCchHHHHHHHH
Q 036165 532 GNIELAEIAAKHLSELEPESAANNMLLTDL 561 (566)
Q Consensus 532 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 561 (566)
|+.+.|..+++++++..|.++..+...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888889999888888888888777654
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=81.60 E-value=53 Score=31.80 Aligned_cols=53 Identities=9% Similarity=-0.037 Sum_probs=26.0
Q ss_pred HHHHhcCChHHHHHHHHHhhhcCCC-CHHHHHHHHHHH-hccCChHHHHHHHHHh
Q 036165 424 FGCANHGYCDEAIELFNQMEERKKL-DHLSFTAVLTAC-CHVGLVELGQRLFNMM 476 (566)
Q Consensus 424 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~-~~~g~~~~a~~~~~~~ 476 (566)
..+.+.|-+..|.++.+-+....+. |+.....+|+.| .++++++..+++.+..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 3444555555555555555554333 444444444433 2445555555555443
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=81.31 E-value=11 Score=27.95 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=27.0
Q ss_pred HHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHH
Q 036165 161 QEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVL 206 (566)
Q Consensus 161 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 206 (566)
-++.+-++.+......|++....+.+++|.+.+++..|.++++-+.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3445555555555566666666666666666666666666665544
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=81.19 E-value=3.3 Score=24.78 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=21.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhHH
Q 036165 145 HRWIALTGAYARRGYHQEAVTVFHEMHI 172 (566)
Q Consensus 145 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 172 (566)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888887754
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=81.12 E-value=78 Score=33.41 Aligned_cols=49 Identities=8% Similarity=-0.153 Sum_probs=26.3
Q ss_pred HhcCChhHHHHHHHHHHHCCC-CCC-------HHHHHHHHHHHHccCchHHHHHHHH
Q 036165 326 VHNFCNDEAFDTFKEMLSQGF-CPT-------SATISSILPACASAANMRRGKEIHG 374 (566)
Q Consensus 326 ~~~g~~~~A~~~~~~m~~~~~-~~~-------~~~~~~ll~~~~~~~~~~~a~~~~~ 374 (566)
+-.+++..|...++.|.+..- .|+ ...+....-.+...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 346778888888888765321 111 1112222223335566777777765
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=81.03 E-value=3.9 Score=34.28 Aligned_cols=33 Identities=18% Similarity=0.138 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhc
Q 036165 533 NIELAEIAAKHLSELEPESAANNMLLTDLYANA 565 (566)
Q Consensus 533 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 565 (566)
-+++|+.-+++++.++|+...++..+|+.|..+
T Consensus 50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 357788888888899999999999999998765
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=80.68 E-value=55 Score=31.43 Aligned_cols=64 Identities=14% Similarity=0.103 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036165 280 VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEP---DVVSWTSVISGLVHNFCNDEAFDTFKEMLS 343 (566)
Q Consensus 280 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 343 (566)
..++..+...+.+.|.++.|...+..+...+... ++...-.-+......|+..+|+..++...+
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555666666666666666666655432111 223333344455556666666666666555
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=80.51 E-value=15 Score=31.58 Aligned_cols=69 Identities=10% Similarity=0.051 Sum_probs=29.6
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC------CCCCHHHHHHHHHHHHhcCCHHHH
Q 036165 467 ELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS------TEPDLFVWGALLGACKNHGNIELA 537 (566)
Q Consensus 467 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A 537 (566)
+.|.+.|-.+... +.--++.....|...|. ..+.++|..++.++. .++|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~-~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGT-PELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCC-CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3444444444433 22233444444443333 234444444444333 134445555555555555555444
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=80.50 E-value=15 Score=27.54 Aligned_cols=48 Identities=8% Similarity=0.096 Sum_probs=34.4
Q ss_pred hHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036165 262 TEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK 309 (566)
Q Consensus 262 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 309 (566)
-+..+-++.+....+.|++......+++|.+.+++..|.++++.++..
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 355666777777778888888888888888888888888888887654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat | Back alignment and domain information |
|---|
Probab=80.08 E-value=12 Score=27.06 Aligned_cols=66 Identities=15% Similarity=0.082 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHH
Q 036165 97 GKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAV 164 (566)
Q Consensus 97 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 164 (566)
+..+++.+++.|+ .+....+.+-..-...|+.+.|+++++.++ +....|..++.++-..|.-.-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 5667777777774 344444444444446688889999999888 88888888998888887765554
|
Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=80.06 E-value=28 Score=30.05 Aligned_cols=73 Identities=14% Similarity=0.100 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHh---CCCCcHhHHHHHHHHHHhcCCHHHHH
Q 036165 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVM---GVEGDLHVRSALVDMYAKCGFISEAR 405 (566)
Q Consensus 332 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~ 405 (566)
+.|...|-++...+.--++.. ...+..|....+.+++..++....+. +-.+++.++.+|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~el-q~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAEL-QYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHH-HHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 556666666655553333333 33333333355566666666655542 22456777777777777777777664
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.5 bits (155), Expect = 7e-11
Identities = 31/290 (10%), Positives = 90/290 (31%), Gaps = 17/290 (5%)
Query: 217 VSSLIDMYSKCGSVEKAKKVFDEMVEK----DIVAMNAMVSGYVQRG---LATEALNLVE 269
++ L+ S++ + + + + A + LA L +
Sbjct: 95 LARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHH 154
Query: 270 EIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF 329
R + +N ++ G+++ G + + +++ G+ PD++S+ + + +
Sbjct: 155 GQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQD 214
Query: 330 CNDEAFDT-FKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMG-VEGDLHV 387
+ + ++M +G + + +L A ++ ++ + + ++
Sbjct: 215 QDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNT 274
Query: 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFN--QMEER 445
L D+YAK + R + K+ + + +
Sbjct: 275 SKLLRDVYAK-----DGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSK 329
Query: 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDL 495
+ L L + N ++ + R Y + L
Sbjct: 330 EVKHARKTLKTLRDQWEKALCRALRETKNRLEREVY-EGRFSLYPFLCLL 378
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 54.8 bits (130), Expect = 6e-08
Identities = 34/375 (9%), Positives = 98/375 (26%), Gaps = 46/375 (12%)
Query: 64 HYKMPIISRSFHLSPAAYSERIEIYIRDRALQSGKI--LHAQLIVSGLARLTQIATKLIT 121
H+ + + +P +I +D+ Q ++ L A+L + + + T+ +
Sbjct: 6 HHHRKVQMGAKDATPVPCGRWAKILEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQ 65
Query: 122 FYTECQNIHHARMLFDEIPKTNIHRWIA----LTGAYARRGYHQEAVTVFHEMHIQGLKQ 177
+ A L D + W L + + L
Sbjct: 66 VEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSG 125
Query: 178 NIFVIPSVLKACGHLSDIGTGEKI---HSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAK 234
+ + K C + + H + + ++++ +++ G+ ++
Sbjct: 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELV 185
Query: 235 KVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSG 294
V + + + P+++++ + +
Sbjct: 186 YVLFMVKDA-------------------------------GLTPDLLSYAAALQCMGRQD 214
Query: 295 DQV-MVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353
+ + + M +G++ + ++S P
Sbjct: 215 QDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNT 274
Query: 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL-----VDMYAKCGFISEARTLF 408
S +L + ++H + + + L V K S+
Sbjct: 275 SKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHA 334
Query: 409 DKMSERNTVTWNSMI 423
K + W +
Sbjct: 335 RKTLKTLRDQWEKAL 349
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 44.8 bits (104), Expect = 8e-05
Identities = 15/100 (15%), Positives = 27/100 (27%), Gaps = 5/100 (5%)
Query: 441 QMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK--IMPRTEHYACMVDLLGR 498
+ + A C + L L + + + + + Y ++ R
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR 177
Query: 499 AGRLAEA---YEMIKTMSTEPDLFVWGALLGACKNHGNIE 535
G E M+K PDL + A L
Sbjct: 178 QGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA 217
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 3e-06
Identities = 76/456 (16%), Positives = 143/456 (31%), Gaps = 124/456 (27%)
Query: 130 HHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLK-QNIFVIP-SVLK 187
HH M F+ T H++ +++ ++VF + + +++ +P S+L
Sbjct: 3 HHHHMDFE----TGEHQY-----------QYKDILSVFEDAFVDNFDCKDVQDMPKSILS 47
Query: 188 A--CGHLSDIGTGEK-----IHSLVLKHSFGTDAFVVSSLIDMYS--------KCGSVEK 232
H+ +L+ K FV L Y +
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 233 AKKVFDEMVEKDIVAMNAMVSGY-VQRGLATEAL-NLVEEIGTPRVKPNVVTWNTLISGF 290
+++ E ++ + N + + Y V R L + E+ R NV+ I G
Sbjct: 108 MTRMYIEQRDR-LYNDNQVFAKYNVSRLQPYLKLRQALLEL---RPAKNVL-----IDGV 158
Query: 291 SKSGDQVMVSKLFQLMRAKGVE---PDVVSWTSVISGLVHNFCNDEAFDTFKEML----- 342
SG + + + V+ + W ++ + CN +T EML
Sbjct: 159 LGSGKTWVAL---DVCLSYKVQCKMDFKIFWLNLKN------CNSP--ETVLEMLQKLLY 207
Query: 343 --SQGFCPTSATISSI-LPACASAANMRR---GKEIHGCAIVMGVEGDLHVRSA-LVDMY 395
+ S S+I L + A +RR K C +V+ +V++A + +
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL----L-NVQNAKAWNAF 262
Query: 396 A-KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFT 454
C + L ++ R + + H D +E K L
Sbjct: 263 NLSC------KIL---LTTRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSL------ 306
Query: 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514
L L R ++ +E PR + ++ E I+
Sbjct: 307 --LLKY-------LDCRPQDLPREVLTTNPR------RLSIIA---------ESIRDGLA 342
Query: 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550
D + K+ +L I L+ LEP
Sbjct: 343 TWDNW---------KHVNCDKLTTIIESSLNVLEPA 369
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 566 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.88 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.85 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.84 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.83 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.83 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.82 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.82 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.82 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.75 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.74 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.71 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.7 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.68 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.67 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.66 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.66 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.65 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.64 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.64 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.64 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.64 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.64 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.64 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.63 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.62 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.62 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.61 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.6 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.57 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.57 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.56 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.56 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.55 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.55 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.55 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.54 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.54 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.53 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.51 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.5 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.49 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.49 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.48 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.47 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.47 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.47 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.46 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.45 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.44 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.42 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.38 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.37 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.36 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.34 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.34 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.33 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.31 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.31 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.3 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.3 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.28 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.24 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.23 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.2 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.19 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.16 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.15 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.12 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.11 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.11 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.1 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.09 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.08 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.07 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.05 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.05 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.04 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.03 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.01 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.0 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.99 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.98 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.97 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.96 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.95 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.95 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.95 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.94 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.94 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.94 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.92 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.92 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.9 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.9 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.88 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.88 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.87 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.85 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.85 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.84 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.81 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.81 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.8 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.8 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.79 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.79 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.78 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.75 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.74 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.74 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.73 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.73 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.72 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.7 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.68 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.68 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.67 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.66 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.66 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.65 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.63 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.62 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.59 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.59 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.57 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.57 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.57 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.56 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.55 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.55 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.54 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.54 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.53 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.53 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.52 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.51 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.51 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.49 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.46 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.46 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.46 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.43 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.42 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.42 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.41 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.39 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.37 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.35 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.35 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.34 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.33 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.32 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.3 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.29 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.28 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.28 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.28 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.26 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.25 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.24 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.23 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.21 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.19 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.16 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.14 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.09 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.05 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.04 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.03 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.01 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.97 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.92 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.89 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.88 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.88 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.79 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.72 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.71 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.71 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.69 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.66 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.64 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.56 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.55 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.5 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.45 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.44 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.42 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.34 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.3 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.22 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.92 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.9 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.74 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.68 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.64 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.63 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.49 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.47 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.38 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.37 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.24 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.05 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.95 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.62 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.6 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.54 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.42 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.3 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 94.99 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 94.7 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.64 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.53 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.33 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.28 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.96 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.72 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 93.7 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 93.43 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.36 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.02 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.01 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 91.8 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 91.1 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 90.81 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.19 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.0 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.91 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 89.62 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.39 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.36 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 88.72 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 86.53 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 85.74 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 85.37 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 84.2 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 82.84 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 81.66 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 81.12 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 80.52 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=354.09 Aligned_cols=480 Identities=8% Similarity=-0.029 Sum_probs=413.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCC--CCCcchHHHHHHHH
Q 036165 77 SPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIP--KTNIHRWIALTGAY 154 (566)
Q Consensus 77 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~ 154 (566)
+...|..++..+.+.|++++|..+++.++... |+..++..++..|.+.|++++|..+|+.+. .++..+|+.++.+|
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCL 160 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 45678999999999999999999999998654 677888999999999999999999999984 47888999999999
Q ss_pred HhcCChHHHHHHHHHhHHC---------------CCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHH
Q 036165 155 ARRGYHQEAVTVFHEMHIQ---------------GLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSS 219 (566)
Q Consensus 155 ~~~g~~~~A~~~~~~m~~~---------------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 219 (566)
.+.|++++|+++|+++... |.+++..+++.++.++.+.|++++|.++|+++.+.+ +.+...+..
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~ 239 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQ 239 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHH
Confidence 9999999999999954322 223457889999999999999999999999999875 335556666
Q ss_pred HHHHHHhcCCHHHHHHH---HHhcCCC----ChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhc
Q 036165 220 LIDMYSKCGSVEKAKKV---FDEMVEK----DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK 292 (566)
Q Consensus 220 l~~~~~~~g~~~~A~~~---~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 292 (566)
+...+...++.+.+... +..+... ...+|+.++..|.+.|++++|.++|+++.+. +++..+++.++..+.+
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHH
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHH
Confidence 66555444332222111 2222222 2345677788899999999999999999865 6899999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHH
Q 036165 293 SGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEI 372 (566)
Q Consensus 293 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 372 (566)
.|++++|.++|+++.+.+ +.+..+++.++.++.+.|++++|..+++++.+.. +.+..++..++..|.+.|++++|..+
T Consensus 318 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999998875 3478899999999999999999999999998653 56788999999999999999999999
Q ss_pred HHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC
Q 036165 373 HGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLD 449 (566)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 449 (566)
++.+.+..+. +..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+..+.+
T Consensus 396 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 474 (597)
T 2xpi_A 396 FSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD 474 (597)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 9999987543 688999999999999999999999998764 578899999999999999999999999999888889
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhHHhc---CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHH
Q 036165 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKY---KIMPR--TEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWG 522 (566)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~ 522 (566)
..+|+.++.++.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++. .+.+..+|.
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 554 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHT 554 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH
Confidence 9999999999999999999999999998652 45677 6899999999999999999999999987 345889999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhh
Q 036165 523 ALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 523 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 564 (566)
.++.+|.+.|++++|.+.++++++.+|+++..+..|+++|..
T Consensus 555 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 555 AIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999864
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-40 Score=341.73 Aligned_cols=433 Identities=11% Similarity=-0.049 Sum_probs=340.9
Q ss_pred hhcCChHHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHH
Q 036165 124 TECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHS 203 (566)
Q Consensus 124 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 203 (566)
.+.|....+...++.++.+++..|+.++..+.+.|++++|+.+|++|.. ..|+..++..++.++...|++++|..+++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 141 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLT 141 (597)
T ss_dssp ------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHH
Confidence 3445555566666666666666677777777777777777777777664 34566666667777777777777777776
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-------------------ChhhHHHHHHHHHHcCChhHH
Q 036165 204 LVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK-------------------DIVAMNAMVSGYVQRGLATEA 264 (566)
Q Consensus 204 ~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~a 264 (566)
++... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++|
T Consensus 142 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 219 (597)
T 2xpi_A 142 KEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRA 219 (597)
T ss_dssp HTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHH
Confidence 66432 456666777777777777777777777754332 256677777777777777777
Q ss_pred HHHHHHhhhCCC-------------------------------------CccHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036165 265 LNLVEEIGTPRV-------------------------------------KPNVVTWNTLISGFSKSGDQVMVSKLFQLMR 307 (566)
Q Consensus 265 ~~~~~~m~~~~~-------------------------------------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 307 (566)
+++|++|.+.+. .+...+|+.++..|.+.|++++|.++|+++.
T Consensus 220 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 299 (597)
T 2xpi_A 220 KECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSIN 299 (597)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhh
Confidence 777777665431 1122234444667778899999999999988
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhH
Q 036165 308 AKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHV 387 (566)
Q Consensus 308 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 387 (566)
+. .++..+|+.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++...|++++|..+++.+.+... .+..+
T Consensus 300 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~ 375 (597)
T 2xpi_A 300 GL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVT 375 (597)
T ss_dssp TG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHH
T ss_pred cC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHH
Confidence 76 5799999999999999999999999999999865 44777899999999999999999999999997653 47889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccC
Q 036165 388 RSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVG 464 (566)
Q Consensus 388 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 464 (566)
+..++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+..+.+..+|..++.+|.+.|
T Consensus 376 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 455 (597)
T 2xpi_A 376 WLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLG 455 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC
Confidence 99999999999999999999998764 567899999999999999999999999999888889999999999999999
Q ss_pred ChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCC--HHHHHHHHHHHHhcCCHH
Q 036165 465 LVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-------TEPD--LFVWGALLGACKNHGNIE 535 (566)
Q Consensus 465 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~--~~~~~~l~~~~~~~g~~~ 535 (566)
++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++. ..|+ ..+|..++.+|.+.|+++
T Consensus 456 ~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 533 (597)
T 2xpi_A 456 NILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD 533 (597)
T ss_dssp CHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHH
Confidence 999999999999976 34578899999999999999999999999985 2576 789999999999999999
Q ss_pred HHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 536 LAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 536 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
+|...++++++.+|+++..+..++++|...|
T Consensus 534 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (597)
T 2xpi_A 534 AAIDALNQGLLLSTNDANVHTAIALVYLHKK 564 (597)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999876
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-29 Score=244.87 Aligned_cols=373 Identities=11% Similarity=0.060 Sum_probs=257.3
Q ss_pred HHHHHhcCChHHHHHHHHHhHHCCCCCC-cchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 036165 151 TGAYARRGYHQEAVTVFHEMHIQGLKQN-IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGS 229 (566)
Q Consensus 151 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 229 (566)
...+.+.|++++|++.++++.+. .|+ ...+..+...+...|++++|...++..++.. +.+...+..+...+.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 44556667777777776666554 233 3344444455556666666666666665543 3445556666666666666
Q ss_pred HHHHHHHHHhcC---CCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 036165 230 VEKAKKVFDEMV---EKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLM 306 (566)
Q Consensus 230 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 306 (566)
+++|.+.|+++. ..+..+|..+..++.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|+++
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666665552 1233345555555555555555555555554432 112233334444444445555555555444
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHh
Q 036165 307 RAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLH 386 (566)
Q Consensus 307 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 386 (566)
.+. . +.+..++..+...+...|++++|...++++.+.++. +..
T Consensus 162 l~~-----------------------------------~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~ 204 (388)
T 1w3b_A 162 IET-----------------------------------Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLD 204 (388)
T ss_dssp HHH-----------------------------------C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHh-----------------------------------C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHH
Confidence 433 1 222344444444555555555555555555544332 456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhcc
Q 036165 387 VRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHV 463 (566)
Q Consensus 387 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 463 (566)
.+..+...+...|++++|...|++..+ .+..++..+..++...|++++|.+.|+++.+..+.+..++..+..++.+.
T Consensus 205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 284 (388)
T 1w3b_A 205 AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 667777778888888888888776653 35678888899999999999999999999987777888999999999999
Q ss_pred CChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036165 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-T-EPDLFVWGALLGACKNHGNIELAEIAA 541 (566)
Q Consensus 464 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~A~~~~ 541 (566)
|++++|.+.++++.+. .+.+..++..++.++.+.|++++|.+.++++. . +.+..++..++.++.+.|++++|...+
T Consensus 285 g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 285 GSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp SCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999975 45678899999999999999999999999987 2 345788999999999999999999999
Q ss_pred HHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 542 KHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 542 ~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
+++++.+|+++..+..++.+|...|
T Consensus 363 ~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 363 KEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 9999999999999999999998765
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-27 Score=230.31 Aligned_cols=353 Identities=10% Similarity=0.004 Sum_probs=253.8
Q ss_pred HHHHHhhcCChHHHHHHhccCCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCCh
Q 036165 119 LITFYTECQNIHHARMLFDEIPK--T-NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI 195 (566)
Q Consensus 119 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 195 (566)
+...+.+.|++++|.+.++.+.+ | +...+..+...+...|++++|...++...+. .+.+..++..+...+...|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCH
Confidence 34567789999999999987643 3 5567888888999999999999999998876 345778999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHHcCChhHHHHHHHHhh
Q 036165 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE--K-DIVAMNAMVSGYVQRGLATEALNLVEEIG 272 (566)
Q Consensus 196 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 272 (566)
++|.+.++++++.. +.+...+..+..++.+.|++++|.+.|+++.+ | +...+..+...+...|++++|...|+++.
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999999874 44566899999999999999999999999843 3 45678888899999999999999999998
Q ss_pred hCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 036165 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352 (566)
Q Consensus 273 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 352 (566)
... +-+..++..+...+...|++++|...++++.+.. +.+...|..+...+...|++++|+..+++..+.. +.+..+
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 239 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHH
Confidence 753 3457788999999999999999999999998763 3356778888888889999999999888887653 233455
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhc
Q 036165 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANH 429 (566)
Q Consensus 353 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 429 (566)
+..+..++...|++++|...++.+.+..+. +..++..+..+|.+.|++++|...|+++.+ .+..+|..+...+...
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 566666666666666666666666554322 334444555555555555555555544432 2334444444444445
Q ss_pred CChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhH
Q 036165 430 GYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQ 477 (566)
Q Consensus 430 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 477 (566)
|++++|.+.++++.+..+.+..++..+..++.+.|++++|...++++.
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 366 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555554444434444444444444444555555555444444
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-29 Score=250.48 Aligned_cols=215 Identities=11% Similarity=0.162 Sum_probs=136.5
Q ss_pred HHHHHHHHHhHHCCCCCCcc-hHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 036165 161 QEAVTVFHEMHIQGLKQNIF-VIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDE 239 (566)
Q Consensus 161 ~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 239 (566)
..+..+.+++.+.+..+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 34555667777776655443 57788888888888888999999888888888888888888888876653211
Q ss_pred cCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHH
Q 036165 240 MVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWT 319 (566)
Q Consensus 240 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 319 (566)
.+.+..++|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 1223345666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh
Q 036165 320 SVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397 (566)
Q Consensus 320 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 397 (566)
.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+.++|.+++++|.+.|..|+..+|+.++..|..
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 666666666666666666666666666666666666666666666666666666666666666666666666666654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=243.53 Aligned_cols=186 Identities=13% Similarity=0.176 Sum_probs=127.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCC---------hhHHHHHHHHHHHcCCCCchhH
Q 036165 146 RWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD---------IGTGEKIHSLVLKHSFGTDAFV 216 (566)
Q Consensus 146 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~~ 216 (566)
.++.+|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.+. ++.|.++|++|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 5788899999999999999999999999999999999999999987654 5678888888888888777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCH
Q 036165 217 VSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQ 296 (566)
Q Consensus 217 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 296 (566)
|+.||++|++.|++++|. ++|++|.+.|+.||..||+.+|.+|++.|++
T Consensus 108 yn~lI~~~~~~g~~~~A~-------------------------------~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~ 156 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAF-------------------------------DMVKQMKAFGIQPRLRSYGPALFGFCRKGDA 156 (501)
T ss_dssp HHHHHHHHHHHTCHHHHH-------------------------------HHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhcCCHHHHH-------------------------------HHHHHHHHcCCCCccceehHHHHHHHHCCCH
Confidence 766666665555555554 4555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036165 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS 362 (566)
Q Consensus 297 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 362 (566)
++|.++|++|.+.|+.||..+|++||.+|++.|+.++|.++|++|.+.|..|+..|++.++..|+.
T Consensus 157 ~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 157 DKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 555555555555555555555555555555555555555555555555555555555555555544
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-25 Score=227.37 Aligned_cols=280 Identities=11% Similarity=-0.050 Sum_probs=235.0
Q ss_pred HHHHHHHHHHHhc---CCCHHHHHHHHHHHHH-----cCCC--------CChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036165 280 VVTWNTLISGFSK---SGDQVMVSKLFQLMRA-----KGVE--------PDVVSWTSVISGLVHNFCNDEAFDTFKEMLS 343 (566)
Q Consensus 280 ~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 343 (566)
...+......+.. .|++++|...++++.+ .... .+...+..+..++...|++++|...++++.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444444444443 8999999999999887 3112 2356788888999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHH
Q 036165 344 QGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWN 420 (566)
Q Consensus 344 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 420 (566)
.. |+...+..+...+...|+++.|...++.+.+.... +...+..+...|...|++++|...|++..+ .+...+.
T Consensus 266 ~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 342 (514)
T 2gw1_A 266 LF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYI 342 (514)
T ss_dssp HC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHH
T ss_pred hC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHH
Confidence 65 33778888999999999999999999999886543 667888999999999999999999998753 4567888
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHH
Q 036165 421 SMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR----TEHYACMVDLL 496 (566)
Q Consensus 421 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~ 496 (566)
.+...+...|++++|...++++.+..+.+..++..+..++...|++++|...++++.+...-.++ ...+..++.+|
T Consensus 343 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 422 (514)
T 2gw1_A 343 QLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLL 422 (514)
T ss_dssp HHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887778889999999999999999999999999875222222 33889999999
Q ss_pred Hh---cCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHH
Q 036165 497 GR---AGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLY 562 (566)
Q Consensus 497 ~~---~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 562 (566)
.+ .|++++|...++++. .+.+..++..+...|.+.|++++|...++++++.+|+++.....+....
T Consensus 423 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 493 (514)
T 2gw1_A 423 TRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAE 493 (514)
T ss_dssp HTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred hhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 99 999999999999987 3456888999999999999999999999999999999999888776544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-23 Score=214.21 Aligned_cols=433 Identities=11% Similarity=0.015 Sum_probs=292.5
Q ss_pred HHHHHHHHHHhhcCChHHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHc
Q 036165 114 QIATKLITFYTECQNIHHARMLFDEIPK---TNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACG 190 (566)
Q Consensus 114 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 190 (566)
..+..+...+.+.|++++|...|+++.+ .+..+|..+..++.+.|++++|++.|+++.+.+ +.+...+..+..++.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 3445555555566666666666655433 244555566666666666666666666665542 223445555555555
Q ss_pred ccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC------ChhhHHHHHHHHHHcCChhHH
Q 036165 191 HLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK------DIVAMNAMVSGYVQRGLATEA 264 (566)
Q Consensus 191 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a 264 (566)
..|++++|...++ .... .|+. ....+..+...+....|...++.+... ........+..+....+.+.+
T Consensus 105 ~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 6666666666654 2221 1111 111222333344445555555555332 111222333344444444444
Q ss_pred HHHHHHhhhCCCCccHH-HHHHHHHHHhcC--------CCHHHHHHHHHHHHHcCCCCC--------hhhHHHHHHHHHh
Q 036165 265 LNLVEEIGTPRVKPNVV-TWNTLISGFSKS--------GDQVMVSKLFQLMRAKGVEPD--------VVSWTSVISGLVH 327 (566)
Q Consensus 265 ~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~--------~~~~~~li~~~~~ 327 (566)
...+...... .+... ....+...+... |++++|..+++.+.+. .|+ ..++..+...+..
T Consensus 180 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 180 VSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHh
Confidence 4433332221 22221 222233333222 4788999999998875 333 2356777788899
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 036165 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTL 407 (566)
Q Consensus 328 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 407 (566)
.|++++|...+++..+. .|+...+..+...+...|+++.|...+..+.+..+. +..++..+...|...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999986 456788889999999999999999999999987654 678899999999999999999999
Q ss_pred HHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC
Q 036165 408 FDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP 484 (566)
Q Consensus 408 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 484 (566)
|++..+ .+...|..+...+...|++++|...++++.+..+.+...+..+..++...|++++|...++++.+...-.+
T Consensus 333 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 333 FQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 998764 45678999999999999999999999999998888888999999999999999999999999886521111
Q ss_pred C----hhHHHHHHHHHHhc----------CCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC
Q 036165 485 R----TEHYACMVDLLGRA----------GRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELE 548 (566)
Q Consensus 485 ~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 548 (566)
+ ...+..+..+|.+. |++++|...++++. .+.+..++..+...|.+.|++++|...++++++..
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 1 12244556778888 99999999999987 34568889999999999999999999999999999
Q ss_pred CCCchHHHHHH
Q 036165 549 PESAANNMLLT 559 (566)
Q Consensus 549 p~~~~~~~~l~ 559 (566)
|+++.....+.
T Consensus 493 ~~~~~~~~~~~ 503 (537)
T 3fp2_A 493 RTMDEKLQATT 503 (537)
T ss_dssp --CHHHHHHHH
T ss_pred CCcHHHHHHHh
Confidence 99887755443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-23 Score=209.19 Aligned_cols=307 Identities=12% Similarity=0.020 Sum_probs=214.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 036165 248 MNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327 (566)
Q Consensus 248 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 327 (566)
+..++..+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++++.+.+ +.+...+..+..+|..
T Consensus 29 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 106 (450)
T 2y4t_A 29 HLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLK 106 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 3444444444444444444444443321 2233444444444444444444444444444432 1233444444444555
Q ss_pred cCChhHHHHHHHHHHHCCCCCCH----HHHH------------HHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHH
Q 036165 328 NFCNDEAFDTFKEMLSQGFCPTS----ATIS------------SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391 (566)
Q Consensus 328 ~g~~~~A~~~~~~m~~~~~~~~~----~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 391 (566)
.|++++|...|+++.+.. |+. ..+. .+...+...|++++|...++.+.+..+. +...+..+
T Consensus 107 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 183 (450)
T 2y4t_A 107 QGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELR 183 (450)
T ss_dssp TTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHH
Confidence 555555555555544331 221 2222 2234467778888888888888776543 67778888
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHH------------
Q 036165 392 VDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAV------------ 456 (566)
Q Consensus 392 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------------ 456 (566)
+.+|.+.|++++|...|+++.+ .+..+|..++..|...|++++|...|+++.+..+.+...+..+
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 263 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES 263 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998888764 5677888899999999999999999999987766666666555
Q ss_pred HHHHhccCChHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHH
Q 036165 457 LTACCHVGLVELGQRLFNMMQEKYKIMPR-----TEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACK 529 (566)
Q Consensus 457 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~ 529 (566)
+.++...|++++|...++++.+. .|+ ...+..++.++.+.|++++|...++++. .+.+..+|..++.+|.
T Consensus 264 ~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 340 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL 340 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 88999999999999999999975 344 4478889999999999999999999986 3457899999999999
Q ss_pred hcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHH
Q 036165 530 NHGNIELAEIAAKHLSELEPESAANNMLLTDLY 562 (566)
Q Consensus 530 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 562 (566)
..|++++|...++++++.+|+++..+..++.+.
T Consensus 341 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 373 (450)
T 2y4t_A 341 IEEMYDEAIQDYETAQEHNENDQQIREGLEKAQ 373 (450)
T ss_dssp HTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 999999999999999999999999999999553
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-23 Score=212.04 Aligned_cols=431 Identities=9% Similarity=-0.018 Sum_probs=316.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC---CCcchHHHHHHHHH
Q 036165 79 AAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK---TNIHRWIALTGAYA 155 (566)
Q Consensus 79 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 155 (566)
+.+......+...|+++.|...++.+++.. |++.++..+...|.+.|++++|...|+++.+ .+..+|..+..++.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 456677788889999999999999999987 6888999999999999999999999987754 35678999999999
Q ss_pred hcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHH---HHHHHhcCCHHH
Q 036165 156 RRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSL---IDMYSKCGSVEK 232 (566)
Q Consensus 156 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l---~~~~~~~g~~~~ 232 (566)
+.|++++|+..|+++...+. ++......++..+........+.+.+..+...+..|+......- ............
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999988753 34444445554444333333333333222222111111111000 011111111222
Q ss_pred HHHHHHhcC---------CC-ChhhHHHHHHHHHH---cCChhHHHHHHHHhhh-----CCC--------CccHHHHHHH
Q 036165 233 AKKVFDEMV---------EK-DIVAMNAMVSGYVQ---RGLATEALNLVEEIGT-----PRV--------KPNVVTWNTL 286 (566)
Q Consensus 233 A~~~~~~~~---------~~-~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~~~--------~p~~~~~~~l 286 (566)
+...+.... .+ +...+......+.. .|++++|...|+++.. ..- +.+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 222222221 11 23445455555554 7899999999998876 311 2235677788
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCch
Q 036165 287 ISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANM 366 (566)
Q Consensus 287 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 366 (566)
...+...|++++|...++.+.+.... ...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence 88899999999999999998887433 8888889999999999999999999998764 45667888888999999999
Q ss_pred HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhh
Q 036165 367 RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQME 443 (566)
Q Consensus 367 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 443 (566)
++|...++.+.+.... +...+..+...|.+.|++++|...++++.+ .+...+..+...+...|++++|...++++.
T Consensus 321 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp THHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999887654 567888899999999999999999998764 456788889999999999999999999998
Q ss_pred hcCCCC------HHHHHHHHHHHhc---cCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-
Q 036165 444 ERKKLD------HLSFTAVLTACCH---VGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS- 513 (566)
Q Consensus 444 ~~~~~~------~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 513 (566)
+..+.+ ...+..+..++.. .|++++|...++++.+. .+.+...+..++.+|.+.|++++|...++++.
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 763322 3489999999999 99999999999999875 24457788899999999999999999999887
Q ss_pred CCCCH
Q 036165 514 TEPDL 518 (566)
Q Consensus 514 ~~p~~ 518 (566)
..|+.
T Consensus 478 ~~~~~ 482 (514)
T 2gw1_A 478 LARTM 482 (514)
T ss_dssp HCSSH
T ss_pred hcccc
Confidence 34543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-22 Score=200.90 Aligned_cols=346 Identities=9% Similarity=-0.037 Sum_probs=200.1
Q ss_pred CcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHH
Q 036165 178 NIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE---KDIVAMNAMVSG 254 (566)
Q Consensus 178 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 254 (566)
+...+..+...+...|++++|..+++++++.. +.+..++..+..++...|++++|...|+++.+ .+..++..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 34455555566666666666666666666542 33455566666666666666666666665522 234555666666
Q ss_pred HHHcCChhHHHHHHHHhhhCCCCccH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 036165 255 YVQRGLATEALNLVEEIGTPRVKPNV---VTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN 331 (566)
Q Consensus 255 ~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 331 (566)
+.+.|++++|...|+++.... +.+. ..+..+...+.. ..+..+...+...|++
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTCH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCCH
Confidence 666666666666666665432 1122 334333222000 0011112335555555
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036165 332 DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411 (566)
Q Consensus 332 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 411 (566)
++|+..|+++.+.. +.+...+..+..++...|++++|...++.+.+.... +..++..++.+|.+.|++++|...|+++
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555432 334445555555555555555555555555554322 4455555666666666666666666555
Q ss_pred CC--C-ChhHHHHH------------HHHHHhcCChHHHHHHHHHhhhcCCCC----HHHHHHHHHHHhccCChHHHHHH
Q 036165 412 SE--R-NTVTWNSM------------IFGCANHGYCDEAIELFNQMEERKKLD----HLSFTAVLTACCHVGLVELGQRL 472 (566)
Q Consensus 412 ~~--~-~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~ 472 (566)
.+ | +...+..+ ...+...|++++|...|+++.+..+.+ ...+..+..++.+.|++++|...
T Consensus 238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 238 LKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 42 2 22223222 667777788888888888877754444 23677777788888888888888
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHH------------HHhcC-----C
Q 036165 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGA------------CKNHG-----N 533 (566)
Q Consensus 473 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~------------~~~~g-----~ 533 (566)
++++.+. .+.+...|..++.+|...|++++|...++++. ..| +...+..+..+ |...| +
T Consensus 318 ~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~ 395 (450)
T 2y4t_A 318 CSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395 (450)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCC
T ss_pred HHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCC
Confidence 8887764 23356777788888888888888888888776 334 35555555532 33334 5
Q ss_pred HHHHHHHHHH-HhhhCCCCc
Q 036165 534 IELAEIAAKH-LSELEPESA 552 (566)
Q Consensus 534 ~~~A~~~~~~-~~~~~p~~~ 552 (566)
.+++.+.+++ +++..|++.
T Consensus 396 ~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 396 KQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp TTHHHHHHHHHHHHSCGGGC
T ss_pred HHHHHHHHHHHHHHhCCCCC
Confidence 6777888886 667777653
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-21 Score=200.85 Aligned_cols=424 Identities=10% Similarity=0.025 Sum_probs=323.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC---CCcchHHHHHHHH
Q 036165 78 PAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK---TNIHRWIALTGAY 154 (566)
Q Consensus 78 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 154 (566)
+..+......+...|+++.|...++.+++..+ .++..+..+...|.+.|++++|.+.|+++.+ .+..+|..+...+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 45677788899999999999999999999873 5778899999999999999999999998754 4677899999999
Q ss_pred HhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCCHHH
Q 036165 155 ARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSF--GTDAFVVSSLIDMYSKCGSVEK 232 (566)
Q Consensus 155 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~g~~~~ 232 (566)
...|++++|+..|+.+ .. .|+.. ...+..+...+....|...++.++.... .+........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 9999999999999744 22 22222 1123333444556788888888865410 1111112334555667778888
Q ss_pred HHHHHHhcCCCChh---hHHHHHHHHH--------HcCChhHHHHHHHHhhhCCCCcc------HHHHHHHHHHHhcCCC
Q 036165 233 AKKVFDEMVEKDIV---AMNAMVSGYV--------QRGLATEALNLVEEIGTPRVKPN------VVTWNTLISGFSKSGD 295 (566)
Q Consensus 233 A~~~~~~~~~~~~~---~~~~li~~~~--------~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~ll~~~~~~~~ 295 (566)
+...+......+.. ....+...+. ..|++++|..+++++.+...... ..++..+...+...|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 77777776554433 3333333222 22588999999999887532211 2356777788889999
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHH
Q 036165 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGC 375 (566)
Q Consensus 296 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 375 (566)
+++|...++.+.+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++.
T Consensus 259 ~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 259 LLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp HHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999887 4557888899999999999999999999998764 45677889999999999999999999999
Q ss_pred HHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCC--C--
Q 036165 376 AIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKK--L-- 448 (566)
Q Consensus 376 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~-- 448 (566)
+.+..+. +...+..+..+|...|++++|...++++.+ .+...+..+...+...|++++|...|+++.+..+ +
T Consensus 336 a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 336 AQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp HHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence 9987654 567888899999999999999999998764 4567889999999999999999999999877621 1
Q ss_pred --CHHHHHHHHHHHhcc----------CChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 449 --DHLSFTAVLTACCHV----------GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 449 --~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
....+.....++... |++++|...++++.+. .+.+...+..+..+|.+.|++++|.+.++++.
T Consensus 415 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 415 HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 222345556677777 9999999999999976 24467889999999999999999999999987
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.3e-21 Score=183.78 Aligned_cols=312 Identities=12% Similarity=0.008 Sum_probs=231.9
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 036165 246 VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL 325 (566)
Q Consensus 246 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 325 (566)
..+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..++
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 344555555666666666666666655432 2334555556666666666666666666665542 22445566666666
Q ss_pred HhcCChhHHHHHHHHHHHCCCCC----CHHHHHHH------------HHHHHccCchHHHHHHHHHHHHhCCCCcHhHHH
Q 036165 326 VHNFCNDEAFDTFKEMLSQGFCP----TSATISSI------------LPACASAANMRRGKEIHGCAIVMGVEGDLHVRS 389 (566)
Q Consensus 326 ~~~g~~~~A~~~~~~m~~~~~~~----~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 389 (566)
...|++++|...|++..+. .| +...+..+ ...+...|++++|...++.+.+..+. +...+.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 158 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRE 158 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHH
Confidence 6666666666666666554 23 22222222 46778888999999999888887543 677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHH-----------
Q 036165 390 ALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTA----------- 455 (566)
Q Consensus 390 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----------- 455 (566)
.+...+...|++++|...++++.+ .+...+..+...+...|++++|...+++..+..+.+...+..
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHH
Confidence 899999999999999999988765 467788889999999999999999999998876666665443
Q ss_pred -HHHHHhccCChHHHHHHHHHhHHhcCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHH
Q 036165 456 -VLTACCHVGLVELGQRLFNMMQEKYKIMPRT----EHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGAC 528 (566)
Q Consensus 456 -l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 528 (566)
+...+...|++++|...++++.+. . +.+. ..+..+..+|.+.|++++|...++++. .+.+..+|..+...+
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKT-E-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc-C-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 366789999999999999999976 2 2223 235568899999999999999999987 344788999999999
Q ss_pred HhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhh
Q 036165 529 KNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 529 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 564 (566)
...|++++|...++++++.+|+++.....|+.++..
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999988754
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.9e-20 Score=176.89 Aligned_cols=282 Identities=13% Similarity=-0.004 Sum_probs=210.5
Q ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036165 279 NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILP 358 (566)
Q Consensus 279 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 358 (566)
+...+..+...+...|++++|.++++++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 33444555555666666666666666665542 2234455556666666677777777776666542 334555666666
Q ss_pred HHHccC-chHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHH
Q 036165 359 ACASAA-NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDE 434 (566)
Q Consensus 359 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 434 (566)
.+...| ++++|...++.+.+.... +...+..+..+|...|++++|...|++..+ .+...+..+...|...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence 666666 677777777766665432 456677788888888888888888877664 345667778888888999999
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcC-------CCCChhHHHHHHHHHHhcCCHHHHHH
Q 036165 435 AIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK-------IMPRTEHYACMVDLLGRAGRLAEAYE 507 (566)
Q Consensus 435 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A~~ 507 (566)
|.+.++++.+..+.+...+..+...+...|++++|...++++.+... .+.....+..++.+|.+.|++++|..
T Consensus 178 A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 178 AERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999998887777888899999999999999999999998876521 13345688899999999999999999
Q ss_pred HHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHh
Q 036165 508 MIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563 (566)
Q Consensus 508 ~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 563 (566)
.++++. .+.+..+|..+...+.+.|++++|...++++++.+|+++..+..++.+|.
T Consensus 258 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 258 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE 315 (330)
T ss_dssp HHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred HHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence 999876 34467788999999999999999999999999999999999999999884
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-17 Score=166.46 Aligned_cols=348 Identities=13% Similarity=0.028 Sum_probs=182.9
Q ss_pred CCcchHHHHHHHHHh----cCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcc----cCChhHHHHHHHHHHHcCCCCc
Q 036165 142 TNIHRWIALTGAYAR----RGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH----LSDIGTGEKIHSLVLKHSFGTD 213 (566)
Q Consensus 142 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~ 213 (566)
.+..++..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|.+.+++..+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 456666666666666 667777777777766653 34455555555555 566677777776666654 3
Q ss_pred hhHHHHHHHHHHh----cCCHHHHHHHHHhcCCC-ChhhHHHHHHHHHH----cCChhHHHHHHHHhhhCCCCccHHHHH
Q 036165 214 AFVVSSLIDMYSK----CGSVEKAKKVFDEMVEK-DIVAMNAMVSGYVQ----RGLATEALNLVEEIGTPRVKPNVVTWN 284 (566)
Q Consensus 214 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~ 284 (566)
...+..|...|.. .+++++|.+.|++..+. +...+..+...|.. .+++++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4445556666655 56666666666665332 44455555555555 556666666666655543 344455
Q ss_pred HHHHHHhc----CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 036165 285 TLISGFSK----SGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH----NFCNDEAFDTFKEMLSQGFCPTSATISSI 356 (566)
Q Consensus 285 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 356 (566)
.+...|.. .++.++|.+.+++..+.| +...+..+...|.. .+++++|...|++..+.| +......+
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~l 261 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRL 261 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 55555554 556666666666655543 34445555555554 555666666666555443 22333333
Q ss_pred HHHHHc----cCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc-----CCHHHHHHHHHhcCC-CChhHHHHHHHHH
Q 036165 357 LPACAS----AANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC-----GFISEARTLFDKMSE-RNTVTWNSMIFGC 426 (566)
Q Consensus 357 l~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~-~~~~~~~~l~~~~ 426 (566)
...+.. .++.++|...++...+.| +...+..+..+|... +++++|...|++..+ .+...+..+...|
T Consensus 262 g~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y 338 (490)
T 2xm6_A 262 GYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIY 338 (490)
T ss_dssp HHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 334433 455555555555554432 233444444444444 455555555554433 2333444444444
Q ss_pred HhcC---ChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh-
Q 036165 427 ANHG---YCDEAIELFNQMEERKKLDHLSFTAVLTACCH----VGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR- 498 (566)
Q Consensus 427 ~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 498 (566)
...| +.++|.++|++..+. .+...+..+...+.. .+++++|...+++..+. + ++..+..|..+|.+
T Consensus 339 ~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~---~~~a~~~Lg~~y~~g 412 (490)
T 2xm6_A 339 FRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-G---LSAAQVQLGEIYYYG 412 (490)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHT
T ss_pred HhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-C---CHHHHHHHHHHHHcC
Confidence 4433 444555555554443 234444444444444 44555555555555443 2 23344444455544
Q ss_pred ---cCCHHHHHHHHHhcC
Q 036165 499 ---AGRLAEAYEMIKTMS 513 (566)
Q Consensus 499 ---~g~~~~A~~~~~~~~ 513 (566)
.+++++|...|++..
T Consensus 413 ~g~~~d~~~A~~~~~~A~ 430 (490)
T 2xm6_A 413 LGVERDYVQAWAWFDTAS 430 (490)
T ss_dssp SSSCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 455555555555444
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-18 Score=165.36 Aligned_cols=327 Identities=6% Similarity=-0.076 Sum_probs=201.5
Q ss_pred cchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHH
Q 036165 179 IFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE---KDIVAMNAMVSGY 255 (566)
Q Consensus 179 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 255 (566)
...+..+...+...|++++|...++++++.. +.+..++..+..++...|++++|...|+++.+ .+...|..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4456667777788888888888888888764 45567778888888888888888888888732 3566788888888
Q ss_pred HHcCChhHHHHHHHHhhhCCCC--ccHHHHHHH------------HHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 036165 256 VQRGLATEALNLVEEIGTPRVK--PNVVTWNTL------------ISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSV 321 (566)
Q Consensus 256 ~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 321 (566)
...|++++|...+++..+.... .+...+..+ ...+...|++++|.+.++.+.+.. +.+...+..+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 160 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELR 160 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 8888888888888888764310 133333333 244444555555555555544431 2234444445
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCH
Q 036165 322 ISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFI 401 (566)
Q Consensus 322 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 401 (566)
..++...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+.+..+. +...+..+...-
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~------ 232 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVK------ 232 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHH------
Confidence 555555555555555555554432 223334444444444444444444444444433221 111111000000
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHH----HHHHHHHHHhccCChHHHHHHHHHhH
Q 036165 402 SEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHL----SFTAVLTACCHVGLVELGQRLFNMMQ 477 (566)
Q Consensus 402 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~ 477 (566)
.......+...+...|++++|...++++.+..+.+.. .+..+..++...|++++|...++++.
T Consensus 233 -------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 299 (359)
T 3ieg_A 233 -------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVL 299 (359)
T ss_dssp -------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 0011123356677888888888888888876554543 35567778888899999999998888
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHh
Q 036165 478 EKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPD-LFVWGALLGACKN 530 (566)
Q Consensus 478 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~ 530 (566)
+. .+.+...+..++.+|.+.|++++|.+.++++. ..|+ ...+..+..+...
T Consensus 300 ~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 300 QM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred Hh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 75 23467788888888999999999999988877 3443 5556666555443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=7.6e-20 Score=173.96 Aligned_cols=376 Identities=12% Similarity=0.107 Sum_probs=176.3
Q ss_pred hcCChHHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHH
Q 036165 125 ECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSL 204 (566)
Q Consensus 125 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 204 (566)
+.|++++|.+.++++..| .+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 667899999999999655 48999999999999999999999663 5777899999999999999999998887
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHH
Q 036165 205 VLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWN 284 (566)
Q Consensus 205 ~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 284 (566)
.++. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 7774 45577888899999999999998888764 67779999999999999999999999987 2588
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 036165 285 TLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA 364 (566)
Q Consensus 285 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 364 (566)
.+..++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ...+.-...++..|.+.|
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G 221 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRG 221 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCC
Confidence 9999999999999999999987 37889999999999999999996655442 233344557888899999
Q ss_pred chHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc--CCHHHHHHHHHhcCC--------CChhHHHHHHHHHHhcCChHH
Q 036165 365 NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC--GFISEARTLFDKMSE--------RNTVTWNSMIFGCANHGYCDE 434 (566)
Q Consensus 365 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~ 434 (566)
.++++..+++..+... +.....|+-+..+|++- ++..+..+.|..-.. .+...|..+...|.+.++++.
T Consensus 222 ~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 222 YFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp CHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 9999999999988655 44677788787777764 456666777664443 356689999999999999998
Q ss_pred HHHHHHHhhhc------------CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH
Q 036165 435 AIELFNQMEER------------KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502 (566)
Q Consensus 435 A~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 502 (566)
|....-+-... ...|...|-..+..|. +....+..-+-..... .+. .+..+..+.+.|.+
T Consensus 301 A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~-~ld-----~~r~v~~~~~~~~l 372 (449)
T 1b89_A 301 AIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSP-RLD-----HTRAVNYFSKVKQL 372 (449)
T ss_dssp HHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGG-GCC-----HHHHHHHHHHTTCT
T ss_pred HHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHh-ccC-----cHHHHHHHHHcCCc
Confidence 87643221110 1123334444444443 1112222222111111 111 13344555555555
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036165 503 AEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAK 542 (566)
Q Consensus 503 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 542 (566)
.-+...++.+....+..+=.++-..|....|++.-..-++
T Consensus 373 ~l~~~yl~~v~~~n~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 373 PLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp TTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 5555555555544455555666677778777766554443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-17 Score=169.87 Aligned_cols=421 Identities=11% Similarity=0.079 Sum_probs=289.9
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCC
Q 036165 101 HAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK--T-NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQ 177 (566)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 177 (566)
++..++.. +.+...+..++.. .+.|+++.|+.+|+++.+ | +...|...+..+.+.|++++|..+|+++... .|
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p 77 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VL 77 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CC
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CC
Confidence 44555554 3477788888884 778999999999998865 3 5567999999999999999999999999875 46
Q ss_pred CcchHHHHHHHH-cccCChhHHHH----HHHHHHHc-CCCC-chhHHHHHHHHHHh---------cCCHHHHHHHHHhcC
Q 036165 178 NIFVIPSVLKAC-GHLSDIGTGEK----IHSLVLKH-SFGT-DAFVVSSLIDMYSK---------CGSVEKAKKVFDEMV 241 (566)
Q Consensus 178 ~~~~~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~ 241 (566)
+...|...+... ...|+.+.|.+ +|+..++. |..| +...|...+....+ .|+++.|..+|++..
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 776766666433 34567776665 67766553 5443 45677777776654 677888888888875
Q ss_pred C-CCh---hhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHH------HcC-
Q 036165 242 E-KDI---VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR------AKG- 310 (566)
Q Consensus 242 ~-~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~------~~~- 310 (566)
. |.. ..|..........|. ..+ ..++. .+.++++.|..++.... +..
T Consensus 158 ~~P~~~~~~~~~~~~~~e~~~~~-~~~-------------------~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~ 215 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKYEEGINI-HLA-------------------KKMIE--DRSRDYMNARRVAKEYETVMKGLDRNA 215 (530)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCH-HHH-------------------HHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSS
T ss_pred hchhhhHHHHHHHHHHHHHhhch-hHH-------------------HHHHH--HhhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4 211 122222211100110 001 11110 12234555655555421 111
Q ss_pred --CCCC--------hhhHHHHHHHHHhc----CCh----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-------cCc
Q 036165 311 --VEPD--------VVSWTSVISGLVHN----FCN----DEAFDTFKEMLSQGFCPTSATISSILPACAS-------AAN 365 (566)
Q Consensus 311 --~~~~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------~~~ 365 (566)
+.|+ ...|...+...... ++. .++..+|++.+... +.+...+......+.. .|+
T Consensus 216 ~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~ 294 (530)
T 2ooe_A 216 PSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGD 294 (530)
T ss_dssp CCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccc
Confidence 2332 23455444332222 222 36778888887752 4456677777776664 688
Q ss_pred hH-------HHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-h-hHHHHHHHHHHhcCChHH
Q 036165 366 MR-------RGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--RN-T-VTWNSMIFGCANHGYCDE 434 (566)
Q Consensus 366 ~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~-~~~~~l~~~~~~~~~~~~ 434 (566)
++ +|..+++..++.-.+.+...+..++..+.+.|++++|..+|+++.+ |+ . ..|...+..+.+.|+.++
T Consensus 295 ~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 374 (530)
T 2ooe_A 295 MNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKS 374 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHH
Confidence 76 8889998888632334688888999999999999999999998774 43 2 478888888889999999
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHH-HhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 435 AIELFNQMEERKKLDHLSFTAVLTA-CCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 435 A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
|.++|++..+..+.+...|...+.. +...|++++|..+|++..+. .+.++..|..++..+.+.|+.++|..+|+++.
T Consensus 375 A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al 452 (530)
T 2ooe_A 375 GRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVL 452 (530)
T ss_dssp HHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHH
Confidence 9999999988644444555443333 33589999999999999876 23467889999999999999999999999987
Q ss_pred C-CC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC
Q 036165 514 T-EP-D----LFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550 (566)
Q Consensus 514 ~-~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 550 (566)
. .| + ...|...+......|+.+.+..+.+++.+..|+
T Consensus 453 ~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 453 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 2 22 2 448888898889999999999999999998885
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-16 Score=161.76 Aligned_cols=348 Identities=12% Similarity=0.027 Sum_probs=161.4
Q ss_pred chHHHHHHHHHHhh----cCChHHHHHHhccCCC-CCcchHHHHHHHHHh----cCChHHHHHHHHHhHHCCCCCCcchH
Q 036165 112 LTQIATKLITFYTE----CQNIHHARMLFDEIPK-TNIHRWIALTGAYAR----RGYHQEAVTVFHEMHIQGLKQNIFVI 182 (566)
Q Consensus 112 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~ 182 (566)
++..+..+-..|.. .++++.|...|++..+ .+..++..|...|.. .+++++|++.|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 33444444444444 4555555555544332 234444455555554 455555555555554433 23333
Q ss_pred HHHHHHHcc----cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhhHHHHHH
Q 036165 183 PSVLKACGH----LSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSK----CGSVEKAKKVFDEMVE-KDIVAMNAMVS 253 (566)
Q Consensus 183 ~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~ 253 (566)
..+...+.. .+++++|.+.+++..+.| +...+..|..+|.. .++.++|.+.|++..+ .+..++..+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344444433 445555555555555443 23344444444444 4455555555554422 23444444555
Q ss_pred HHHH----cCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 036165 254 GYVQ----RGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK----SGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGL 325 (566)
Q Consensus 254 ~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 325 (566)
.|.. .++.++|+..|++..+.| +...+..+...+.. .+++++|..++++..+.| +...+..+...|
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 5544 455555555555544432 23333344444443 445555555555544432 233444444444
Q ss_pred Hh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-----CchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHH
Q 036165 326 VH----NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASA-----ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396 (566)
Q Consensus 326 ~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 396 (566)
.. .+++++|+..|++..+.| +...+..+...+... ++.++|...++...+.+ +...+..+..+|.
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 339 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYF 339 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Confidence 44 455555555555554432 222333344444433 45555555555554443 2233444444444
Q ss_pred hcC---CHHHHHHHHHhcCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc----cC
Q 036165 397 KCG---FISEARTLFDKMSE-RNTVTWNSMIFGCAN----HGYCDEAIELFNQMEERKKLDHLSFTAVLTACCH----VG 464 (566)
Q Consensus 397 ~~g---~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 464 (566)
+.| +.++|...|++..+ .+...+..+...|.. .+++++|...|++..+. .+...+..+...+.. .+
T Consensus 340 ~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~ 417 (490)
T 2xm6_A 340 RLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVER 417 (490)
T ss_dssp HSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC
T ss_pred hCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCC
Confidence 433 44555555544433 334444445555544 45555555555554443 133444444444444 45
Q ss_pred ChHHHHHHHHHhHHh
Q 036165 465 LVELGQRLFNMMQEK 479 (566)
Q Consensus 465 ~~~~a~~~~~~~~~~ 479 (566)
++++|...|++..+.
T Consensus 418 d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 418 DYVQAWAWFDTASTN 432 (490)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC
Confidence 555555555555544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-17 Score=159.27 Aligned_cols=282 Identities=10% Similarity=-0.043 Sum_probs=173.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 036165 248 MNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH 327 (566)
Q Consensus 248 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 327 (566)
+..++..+...|++++|+.+++++.... +.+...+..++..+...|++++|..+++++.+.. +.+...|..+...+..
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLM 102 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 3333444444444444444444443321 1122233333344444444444444444444331 1234444445555555
Q ss_pred cC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 036165 328 NF-CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEART 406 (566)
Q Consensus 328 ~g-~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 406 (566)
.| ++++|...|++..+.. +.+...+..+...+...|++++|...++.+.+.... +...+..+...|...|++++|..
T Consensus 103 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 180 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAER 180 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHH
Confidence 55 5555555555554432 223444555555555555555555555555554433 34445557777777788888888
Q ss_pred HHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcC---------CCCHHHHHHHHHHHhccCChHHHHHHHH
Q 036165 407 LFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERK---------KLDHLSFTAVLTACCHVGLVELGQRLFN 474 (566)
Q Consensus 407 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 474 (566)
.+++..+ .+...+..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...++
T Consensus 181 ~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (330)
T 3hym_B 181 FFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260 (330)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 7777654 345677778888888888888888888887652 4445788899999999999999999999
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHH-HhcCCHH
Q 036165 475 MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGAC-KNHGNIE 535 (566)
Q Consensus 475 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~-~~~g~~~ 535 (566)
++.+. . +.+...+..+..+|.+.|++++|.+.++++. ..| +...+..+..++ ...|+.+
T Consensus 261 ~a~~~-~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 261 QALVL-I-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHH-S-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHhh-C-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 98875 2 3456788889999999999999999999887 334 677777777777 4556543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-15 Score=161.72 Aligned_cols=420 Identities=10% Similarity=0.075 Sum_probs=288.1
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHH
Q 036165 75 HLSPAAYSERIEIYIRDRALQSGKILHAQLIVSG--LARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTG 152 (566)
Q Consensus 75 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 152 (566)
..+|+......++|+..|.+.++.++++.++-.+ +..+....+.++....+. +.........+...-+ ..-+..
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~ 1057 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIAN 1057 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHH
Confidence 4667778888888888888889999888888442 124556677777666555 3444444444443222 344777
Q ss_pred HHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 036165 153 AYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEK 232 (566)
Q Consensus 153 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 232 (566)
.+...|.+++|..+|++... .....+.++. ..+++++|.++.++. .+..+|..+..++.+.|++++
T Consensus 1058 Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHH
Confidence 78888888999888888521 1122233332 667788888887754 346677788888888888888
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 036165 233 AKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVE 312 (566)
Q Consensus 233 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 312 (566)
|.+.|.+. .|...|..++.++.+.|++++|.+.|...++.. ++....+.++.+|++.+++++...+. + .
T Consensus 1124 AIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~ 1192 (1630)
T 1xi4_A 1124 AIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---G 1192 (1630)
T ss_pred HHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---C
Confidence 88888765 667778888888888888888888888766643 33222334788888888877544442 1 3
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHH
Q 036165 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392 (566)
Q Consensus 313 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 392 (566)
++...|..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.+++. .+..+|..+.
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~ 1257 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 1257 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHH
Confidence 45566777888888888888888888874 36888888888888888888888776 3567777788
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc--cCChHHHH
Q 036165 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCH--VGLVELGQ 470 (566)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~ 470 (566)
.++...|++..|...... ...+...+..++..|...|.+++|+.+++......+-....|.-+...+++ .++..++.
T Consensus 1258 ~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred HHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 888888888888887765 334555666788888888888888888887776544444456555555544 44555555
Q ss_pred HHHHHhHHhcCCCC------ChhHHHHHHHHHHhcCCHHHHHHHHHh-------------cC-CCCCHHHHHHHHHHHHh
Q 036165 471 RLFNMMQEKYKIMP------RTEHYACMVDLLGRAGRLAEAYEMIKT-------------MS-TEPDLFVWGALLGACKN 530 (566)
Q Consensus 471 ~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~-------------~~-~~p~~~~~~~l~~~~~~ 530 (566)
+.|..-. .++| +...|.-++..|.+.|+++.|...+-+ .. ...++..|...+.-|..
T Consensus 1337 k~f~~ri---ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~ 1413 (1630)
T 1xi4_A 1337 ELFWSRV---NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE 1413 (1630)
T ss_pred HHHHHhc---ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHh
Confidence 5554332 3333 456788888888888888888733221 11 22456666666666655
Q ss_pred cC---------------CHHHHHHHHH
Q 036165 531 HG---------------NIELAEIAAK 542 (566)
Q Consensus 531 ~g---------------~~~~A~~~~~ 542 (566)
.+ |++++.++++
T Consensus 1414 ~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1414 FKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred hChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 55 6677766666
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-16 Score=163.01 Aligned_cols=419 Identities=13% Similarity=0.057 Sum_probs=290.6
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC--CCcchHHHHH
Q 036165 74 FHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK--TNIHRWIALT 151 (566)
Q Consensus 74 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li 151 (566)
.|.+...|..++.. ...|+++.|+.+++.+++.. +.+...+..++..+.+.|++++|+.+|++..+ |+...|...+
T Consensus 9 ~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~ 86 (530)
T 2ooe_A 9 NPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYL 86 (530)
T ss_dssp CTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 46677888888884 77899999999999999864 45778899999999999999999999998876 6666788777
Q ss_pred HHH-HhcCChHHHHH----HHHHhHHC-CCCC-CcchHHHHHHHHcc---------cCChhHHHHHHHHHHHcCCCCchh
Q 036165 152 GAY-ARRGYHQEAVT----VFHEMHIQ-GLKQ-NIFVIPSVLKACGH---------LSDIGTGEKIHSLVLKHSFGTDAF 215 (566)
Q Consensus 152 ~~~-~~~g~~~~A~~----~~~~m~~~-g~~p-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~ 215 (566)
... ...|+++.|.+ +|++.... |..| +...|...+..... .|+++.|..+|++.++........
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 543 45688877765 77766543 5444 34566666665543 688999999999998832111123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHh------hhCC---CCcc-------
Q 036165 216 VVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEI------GTPR---VKPN------- 279 (566)
Q Consensus 216 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m------~~~~---~~p~------- 279 (566)
.|..........|. ..+..++.. +.+++..|..++.++ .+.. ++|+
T Consensus 167 ~~~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~ 228 (530)
T 2ooe_A 167 LWRDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQ 228 (530)
T ss_dssp HHHHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHH
T ss_pred HHHHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHH
Confidence 33333222111111 111111111 223455555555542 1111 2333
Q ss_pred -HHHHHHHHHHHhc----CCCH----HHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-------cCChh-------HHHH
Q 036165 280 -VVTWNTLISGFSK----SGDQ----VMVSKLFQLMRAKGVEPDVVSWTSVISGLVH-------NFCND-------EAFD 336 (566)
Q Consensus 280 -~~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~ 336 (566)
...|...+..... .++. +.+..+|++.... .+.+...|...+..+.. .|+++ +|..
T Consensus 229 ~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~ 307 (530)
T 2ooe_A 229 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 307 (530)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHH
Confidence 2344444332221 1232 3677788887765 24467788888877775 68877 8899
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C
Q 036165 337 TFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--R 414 (566)
Q Consensus 337 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~ 414 (566)
+|++..+.-.+.+...+..++..+.+.|++++|..+++.+++..+.....+|..++..+.+.|++++|..+|++..+ |
T Consensus 308 ~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~ 387 (530)
T 2ooe_A 308 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 387 (530)
T ss_dssp HHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 99988763234456778888888889999999999999998854331135788888888899999999999998875 2
Q ss_pred -ChhHHHHHHH-HHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC--hhHHH
Q 036165 415 -NTVTWNSMIF-GCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR--TEHYA 490 (566)
Q Consensus 415 -~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~ 490 (566)
+...|...+. .+...|+.++|..+|++..+..+.+...|..++..+.+.|+.++|..+|+++.......|+ ...|.
T Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~ 467 (530)
T 2ooe_A 388 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA 467 (530)
T ss_dssp CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHH
T ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHH
Confidence 2222322222 2336899999999999999887778889999999999999999999999999875223332 34788
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC
Q 036165 491 CMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 491 ~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
..+....+.|+.+.+..+.+++.
T Consensus 468 ~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 468 RFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888999999999998876
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-18 Score=167.82 Aligned_cols=248 Identities=10% Similarity=-0.081 Sum_probs=182.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 036165 315 VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDM 394 (566)
Q Consensus 315 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 394 (566)
...+..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++.+.+..+. +...+..+..+
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~ 141 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVS 141 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 3445555556666666666666666665543 334455555556666666666666666666555432 45556666666
Q ss_pred HHhcCCHHHHHHHHHhcCC--CC-hhHHHH---------------HHHHHHhcCChHHHHHHHHHhhhcCCC--CHHHHH
Q 036165 395 YAKCGFISEARTLFDKMSE--RN-TVTWNS---------------MIFGCANHGYCDEAIELFNQMEERKKL--DHLSFT 454 (566)
Q Consensus 395 ~~~~g~~~~A~~~~~~~~~--~~-~~~~~~---------------l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~ 454 (566)
|...|++++|...++++.+ |+ ...+.. .+..+...|++++|...|+++.+..+. +..++.
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 221 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 221 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHH
Confidence 6666666666666665543 11 111110 133333889999999999999987555 788999
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcC
Q 036165 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHG 532 (566)
Q Consensus 455 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g 532 (566)
.+..++...|++++|...++++.+. .+.+...+..++.+|.+.|++++|...++++. .+.+..++..+..+|.+.|
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 299 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG 299 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence 9999999999999999999999875 24457889999999999999999999999987 3456888999999999999
Q ss_pred CHHHHHHHHHHHhhhCCCC-----------chHHHHHHHHHhhcC
Q 036165 533 NIELAEIAAKHLSELEPES-----------AANNMLLTDLYANAG 566 (566)
Q Consensus 533 ~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g 566 (566)
++++|...++++++..|++ +..+..++.+|...|
T Consensus 300 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 344 (368)
T 1fch_A 300 AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 344 (368)
T ss_dssp CHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhC
Confidence 9999999999999999888 889999999998765
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.82 E-value=7e-16 Score=163.38 Aligned_cols=403 Identities=12% Similarity=0.101 Sum_probs=282.3
Q ss_pred chHHHHHHHHHHhhcCChHHHHHHhccCCCC------CcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHH
Q 036165 112 LTQIATKLITFYTECQNIHHARMLFDEIPKT------NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSV 185 (566)
Q Consensus 112 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 185 (566)
+|.--...++.|...|.+.+|.++++++.-. +...-+.++.+.++. +..+..+..++.... ...-+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHH
Confidence 3334445556666666666666666655421 123344455555554 444444444444311 12235
Q ss_pred HHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHH
Q 036165 186 LKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEAL 265 (566)
Q Consensus 186 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 265 (566)
...+...|.+++|..+|++.. -.....+.++ -..|++++|.++.+++. +..+|..+..++.+.|++++|+
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHH
Confidence 556667788888888887752 1111222222 26678888888888763 4667888999999999999999
Q ss_pred HHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 036165 266 NLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQG 345 (566)
Q Consensus 266 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 345 (566)
+.|.+. -|...|..++.+|.+.|++++|.+.+....+.. +++...+.++.+|++.+++++...+. +
T Consensus 1126 dsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~-- 1191 (1630)
T 1xi4_A 1126 DSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N-- 1191 (1630)
T ss_pred HHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h--
Confidence 998663 467778889999999999999999998877764 34333445888899988887533332 2
Q ss_pred CCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHH
Q 036165 346 FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFG 425 (566)
Q Consensus 346 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~ 425 (566)
.++...+..+...|...|+++.|..+|..+ ..|..++..|.+.|++++|.+.+++. .+..+|..+..+
T Consensus 1192 -~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1192 -GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFA 1259 (1630)
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHH
Confidence 456667778889999999999999999885 36888999999999999999999887 456788888889
Q ss_pred HHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhc--CCH
Q 036165 426 CANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP-RTEHYACMVDLLGRA--GRL 502 (566)
Q Consensus 426 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--g~~ 502 (566)
|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++.... ..+ ....|.-|..+|.+. ++.
T Consensus 1260 cve~~Ef~LA~~cgl~I----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~---LeraH~gmftELaiLyaKy~pekl 1332 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLHI----VVHADELEELINYYQDRGYFEELITMLEAALG---LERAHMGMFTELAILYSKFKPQKM 1332 (1630)
T ss_pred HhhhhHHHHHHHHHHhh----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---cChhHhHHHHHHHHHHHhCCHHHH
Confidence 99999988888766542 34566777899999999999999999988874 333 345666666666654 466
Q ss_pred HHHHHHHHhcCC-C------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh------------hCCCCchHHHHHHHHHh
Q 036165 503 AEAYEMIKTMST-E------PDLFVWGALLGACKNHGNIELAEIAAKHLSE------------LEPESAANNMLLTDLYA 563 (566)
Q Consensus 503 ~~A~~~~~~~~~-~------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~~p~~~~~~~~l~~~~~ 563 (566)
.++.+.|..-.. + -+...|..+...|.+.|+++.|...+-.-.+ ..+.|+..|...++.|.
T Consensus 1333 mEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl 1412 (1630)
T 1xi4_A 1333 REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL 1412 (1630)
T ss_pred HHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHH
Confidence 677777765442 2 2467799999999999999999844333222 25788898888888886
Q ss_pred hc
Q 036165 564 NA 565 (566)
Q Consensus 564 ~~ 565 (566)
..
T Consensus 1413 ~~ 1414 (1630)
T 1xi4_A 1413 EF 1414 (1630)
T ss_pred hh
Confidence 53
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-18 Score=168.99 Aligned_cols=298 Identities=11% Similarity=0.032 Sum_probs=194.9
Q ss_pred HHhcCCHHHHHH-HHHhcCC---C----ChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCC
Q 036165 224 YSKCGSVEKAKK-VFDEMVE---K----DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGD 295 (566)
Q Consensus 224 ~~~~g~~~~A~~-~~~~~~~---~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 295 (566)
+...|++++|.+ .|++... . +...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 444578888888 7776532 1 34567788888888888999988888888754 4466778888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHH
Q 036165 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGC 375 (566)
Q Consensus 296 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 375 (566)
+++|...++++.+.. +.+..++..+..++...|++++|...++++.+... .+...+..+... .
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~-------~-------- 176 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEG-------A-------- 176 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC---------------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHH-------h--------
Confidence 888888888887763 34677788888888888888888888888877541 111111110000 0
Q ss_pred HHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C---ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCH
Q 036165 376 AIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--R---NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDH 450 (566)
Q Consensus 376 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 450 (566)
+..........+...+ ..|++++|...|+++.+ | +..++..+...|...|++++|...|+++.+..+.+.
T Consensus 177 ----~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 251 (368)
T 1fch_A 177 ----GGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY 251 (368)
T ss_dssp -------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ----hhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH
Confidence 0000000111222223 66777777777776653 3 356677777777777888888888877777666667
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-C-----------
Q 036165 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-D----------- 517 (566)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~----------- 517 (566)
.++..+..++...|++++|...++++.+. .+.+...+..++.+|.+.|++++|...++++. ..| +
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence 77777888888888888888888877764 23356677777888888888888888877765 111 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036165 518 LFVWGALLGACKNHGNIELAEIAAKHLSE 546 (566)
Q Consensus 518 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (566)
..+|..+..+|...|+.++|..++++.++
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 57788888888888888888887776554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.2e-17 Score=152.90 Aligned_cols=231 Identities=10% Similarity=-0.017 Sum_probs=169.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCC-cHhHHHHHHHHHHh
Q 036165 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEG-DLHVRSALVDMYAK 397 (566)
Q Consensus 319 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 397 (566)
..+.++|...|+++.|+..++. .-+|+..++..+...+...++.+.|.+.++.+...+..| +...+..+..+|.+
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~ 113 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFY 113 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH
Confidence 3344555555555555554433 123444555555556666666666666666665554323 45666777788889
Q ss_pred cCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHH--HHHHHHHhccCChHHHHHHHHH
Q 036165 398 CGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSF--TAVLTACCHVGLVELGQRLFNM 475 (566)
Q Consensus 398 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~ 475 (566)
.|++++|++.+++ ..+...+..++..+.+.|++++|.+.|+++.+..+.+.... ..++..+...|++++|..+|++
T Consensus 114 ~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~ 191 (291)
T 3mkr_A 114 DQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQE 191 (291)
T ss_dssp TTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 9999999999988 46677888888999999999999999999988643332221 2233444566899999999999
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHhhhCCCCc
Q 036165 476 MQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIEL-AEIAAKHLSELEPESA 552 (566)
Q Consensus 476 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~p~~~ 552 (566)
+.+. .+.++..++.+..++.+.|++++|...++++. .+.++.++..++..+...|+.++ +.++++++++.+|+++
T Consensus 192 ~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 192 MADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp HHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 9986 45678889999999999999999999999977 34478889999999999998865 6789999999999998
Q ss_pred hHHHH
Q 036165 553 ANNML 557 (566)
Q Consensus 553 ~~~~~ 557 (566)
.+...
T Consensus 270 ~~~d~ 274 (291)
T 3mkr_A 270 FIKEY 274 (291)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.8e-18 Score=163.09 Aligned_cols=247 Identities=12% Similarity=-0.065 Sum_probs=173.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 036165 316 VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395 (566)
Q Consensus 316 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 395 (566)
..+..+...+.+.|++++|+..|+++++.. +.+...+..+...+...|++++|...++.+.+..+. +...+..+..+|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 335555555555566666666666555542 334455555555666666666666666665554432 455666666666
Q ss_pred HhcCCHHHHHHHHHhcCC--C-----------ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCC--CHHHHHHHHHHH
Q 036165 396 AKCGFISEARTLFDKMSE--R-----------NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL--DHLSFTAVLTAC 460 (566)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~--~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~ 460 (566)
.+.|++++|...|+++.+ | ....+..+...+...|++++|...++++.+..+. +..++..+...+
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 666677766666666553 1 1223445577888899999999999999888555 788999999999
Q ss_pred hccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 036165 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAE 538 (566)
Q Consensus 461 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~ 538 (566)
...|++++|+..++++.+. .+.+..+|..++.+|.+.|++++|...++++. .+.+..+|..+..+|.+.|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999875 34467889999999999999999999999887 3345888999999999999999999
Q ss_pred HHHHHHhhhCCC------------CchHHHHHHHHHhhcC
Q 036165 539 IAAKHLSELEPE------------SAANNMLLTDLYANAG 566 (566)
Q Consensus 539 ~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g 566 (566)
..+++++++.|+ +...+..|+.++...|
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 341 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMD 341 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcC
Confidence 999999998877 3677888888877654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-17 Score=161.78 Aligned_cols=264 Identities=12% Similarity=-0.005 Sum_probs=153.1
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 036165 244 DIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323 (566)
Q Consensus 244 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 323 (566)
+...|..+...+.+.|++++|...|+++.... +.+..++..+...+...|++++|...|+++.+.. +.+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44558888888888888888888888887653 3467778888888888888888888888887763 335778888888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHH
Q 036165 324 GLVHNFCNDEAFDTFKEMLSQGFCPTS-----------ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392 (566)
Q Consensus 324 ~~~~~g~~~~A~~~~~~m~~~~~~~~~-----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 392 (566)
+|...|++++|...|+++.+.. |+. ..+..+...+...|++++|...++.+.+..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--------- 210 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM--------- 210 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSS---------
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc---------
Confidence 8888888888888888887642 221 111223444455555555555555555443221
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHH
Q 036165 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRL 472 (566)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 472 (566)
.+..++..+...|...|++++|.+.|+++.+..+.+..++..+..++...|++++|+..
T Consensus 211 ---------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 269 (365)
T 4eqf_A 211 ---------------------IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEA 269 (365)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---------------------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 02344444444455555555555555555444444445555555555555555555555
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-------------CHHHHHHHHHHHHhcCCHHHHH
Q 036165 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-------------DLFVWGALLGACKNHGNIELAE 538 (566)
Q Consensus 473 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-------------~~~~~~~l~~~~~~~g~~~~A~ 538 (566)
++++.+. .+.+...+..+..+|.+.|++++|...++++. ..| +..+|..+..++...|+.+.+.
T Consensus 270 ~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 347 (365)
T 4eqf_A 270 YTRALEI--QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQ 347 (365)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHH
Confidence 5555443 12224445555555555555555555555443 011 1345555556666666666555
Q ss_pred HHHHH
Q 036165 539 IAAKH 543 (566)
Q Consensus 539 ~~~~~ 543 (566)
...++
T Consensus 348 ~~~~~ 352 (365)
T 4eqf_A 348 AANLG 352 (365)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 55544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-16 Score=160.84 Aligned_cols=387 Identities=10% Similarity=-0.061 Sum_probs=225.8
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHhHHC-----C---CCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcC-----
Q 036165 143 NIHRWIALTGAYARRGYHQEAVTVFHEMHIQ-----G---LKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS----- 209 (566)
Q Consensus 143 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g----- 209 (566)
....||.+...+...|++++|++.|++..+. + .+....+|..+..++...|++++|...++++.+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3557899999999999999999999887542 1 12234577888888888899999988888876531
Q ss_pred -CC-CchhHHHHHHHHHHh--cCCHHHHHHHHHhcCC--C-ChhhHHHHHHH---HHHcCChhHHHHHHHHhhhCCCCcc
Q 036165 210 -FG-TDAFVVSSLIDMYSK--CGSVEKAKKVFDEMVE--K-DIVAMNAMVSG---YVQRGLATEALNLVEEIGTPRVKPN 279 (566)
Q Consensus 210 -~~-~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~--~-~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~~~~p~ 279 (566)
.. ....++..+..++.. .+++++|.+.|++..+ | +...+..+..+ +...++.++|++.+++..+.. +.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 11 123455555544444 3468888888887732 3 44455544444 344577778888887776543 234
Q ss_pred HHHHHHHHHHHhc----CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 036165 280 VVTWNTLISGFSK----SGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISS 355 (566)
Q Consensus 280 ~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 355 (566)
...+..+...+.. .+++++|.+.+++..... +.+...+..+...|...|++++|...+++..+.. +.+..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 4455545444433 456677888887776652 3456677778888888888888888888877653 333444555
Q ss_pred HHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCh
Q 036165 356 ILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYC 432 (566)
Q Consensus 356 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 432 (566)
+..++...+....+. ............+..++|...+++..+ .+...+..+...|...|++
T Consensus 287 lg~~y~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~ 350 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNL----------------RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQY 350 (472)
T ss_dssp HHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhhhH----------------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccH
Confidence 444443211110000 000011111112345677777776553 4566788899999999999
Q ss_pred HHHHHHHHHhhhcCCCCHH---HHHHHHH-HHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 036165 433 DEAIELFNQMEERKKLDHL---SFTAVLT-ACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508 (566)
Q Consensus 433 ~~A~~~~~~~~~~~~~~~~---~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 508 (566)
++|+..|++..+..+++.. .+..+.. .....|++++|+..+++..+. .|+....... .+.+.++
T Consensus 351 ~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i---~~~~~~~~~~---------~~~l~~~ 418 (472)
T 4g1t_A 351 EEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI---NQKSREKEKM---------KDKLQKI 418 (472)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS---CCCCHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHH---------HHHHHHH
Confidence 9999999998876333322 2333333 345789999999999998853 5554332222 2334445
Q ss_pred HHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHH
Q 036165 509 IKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTD 560 (566)
Q Consensus 509 ~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 560 (566)
+++.. .+.+..+|..+..+|...|++++|++.|+++++.+|.+|.+..-+|+
T Consensus 419 ~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G~ 472 (472)
T 4g1t_A 419 AKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNGE 472 (472)
T ss_dssp HHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCCC
Confidence 55443 34567899999999999999999999999999999999988776653
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-18 Score=165.34 Aligned_cols=304 Identities=14% Similarity=0.148 Sum_probs=112.3
Q ss_pred hcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 036165 226 KCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQL 305 (566)
Q Consensus 226 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 305 (566)
+.|++++|.++++++..+ .+|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 445566666666666333 2566666666666666666666643 23555666666666666666666665555
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcH
Q 036165 306 MRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL 385 (566)
Q Consensus 306 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 385 (566)
..+. .+++.+.+.++.+|.+.|+++++.++++ .|+..++..+...|...|.++.|...|..+
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------- 148 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------- 148 (449)
T ss_dssp ------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------
Confidence 5443 3345556666666666666666665553 245556666666666666666666666644
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCC
Q 036165 386 HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGL 465 (566)
Q Consensus 386 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 465 (566)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|.
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~----~~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV----VHADELEELINYYQDRGY 222 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT----TCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH----hCHhhHHHHHHHHHHCCC
Confidence 24666777777777777777777766 366677777777777777777744333321 233334456666777777
Q ss_pred hHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc--CCHHHHHHHHHhcCCCC-------CHHHHHHHHHHHHhcCCHHH
Q 036165 466 VELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA--GRLAEAYEMIKTMSTEP-------DLFVWGALLGACKNHGNIEL 536 (566)
Q Consensus 466 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~p-------~~~~~~~l~~~~~~~g~~~~ 536 (566)
+++|..+++..... . +-....|+-|.-+|.+- |+..+.++.|..-..-| +...|..+...|...++++.
T Consensus 223 ~eEai~lLe~aL~l-e-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 223 FEELITMLEAALGL-E-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHHHHTTS-T-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCC-c-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 77777777766632 1 22344555555555543 34555555554333111 34556677777777777776
Q ss_pred HHHHHHHHhhh------------CCCCchHHHHHHHHHh
Q 036165 537 AEIAAKHLSEL------------EPESAANNMLLTDLYA 563 (566)
Q Consensus 537 A~~~~~~~~~~------------~p~~~~~~~~l~~~~~ 563 (566)
|...+-.-... ++.|...|....+.|.
T Consensus 301 A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 301 AIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL 339 (449)
T ss_dssp HHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred HHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Confidence 66654433322 4556666666666654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=6.7e-17 Score=154.06 Aligned_cols=243 Identities=11% Similarity=-0.077 Sum_probs=167.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC
Q 036165 320 SVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG 399 (566)
Q Consensus 320 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 399 (566)
.+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+..+. +...+..+...|...|
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHHcC
Confidence 33344444444444444444444332 223333444444444444444444444444443221 3444445555555555
Q ss_pred CHHHHHHHHHhcCC--C-ChhHHHH-------------H-HH-HHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHh
Q 036165 400 FISEARTLFDKMSE--R-NTVTWNS-------------M-IF-GCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACC 461 (566)
Q Consensus 400 ~~~~A~~~~~~~~~--~-~~~~~~~-------------l-~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 461 (566)
++++|...++++.+ | +...+.. + .. .+...|++++|.+.++++.+..+.+...+..+...+.
T Consensus 104 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 183 (327)
T 3cv0_A 104 NANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYN 183 (327)
T ss_dssp CHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 55555555554432 1 1111211 1 22 3667889999999999999887778899999999999
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036165 462 HVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEI 539 (566)
Q Consensus 462 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 539 (566)
..|++++|.+.++++.+. .+.+...+..++.+|.+.|++++|...++++. .+.+..+|..+...+.+.|++++|..
T Consensus 184 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 261 (327)
T 3cv0_A 184 LSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAK 261 (327)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 999999999999999875 24467889999999999999999999999987 34568889999999999999999999
Q ss_pred HHHHHhhhCCC------------CchHHHHHHHHHhhcC
Q 036165 540 AAKHLSELEPE------------SAANNMLLTDLYANAG 566 (566)
Q Consensus 540 ~~~~~~~~~p~------------~~~~~~~l~~~~~~~g 566 (566)
.++++++..|+ ++..+..++.+|...|
T Consensus 262 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 262 QLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN 300 (327)
T ss_dssp HHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC
Confidence 99999999999 7899999999998876
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-16 Score=150.95 Aligned_cols=265 Identities=10% Similarity=-0.012 Sum_probs=141.0
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 036165 247 AMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLV 326 (566)
Q Consensus 247 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 326 (566)
.+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34455555566666666666666655432 2244555556666666666666666666665542 234555666666666
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHccCchHHHHHHHHHHHHhCCCCcHhHHHHH
Q 036165 327 HNFCNDEAFDTFKEMLSQGFCPTSATISSI--------------LP-ACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391 (566)
Q Consensus 327 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 391 (566)
..|++++|...++++.+.. +.+...+..+ .. .+...|++++|...++.+.+...
T Consensus 101 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---------- 169 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP---------- 169 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST----------
T ss_pred HcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC----------
Confidence 6666666666666666542 1111111111 11 13344444444444444444332
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHH
Q 036165 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQR 471 (566)
Q Consensus 392 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 471 (566)
.+...+..+...+...|++++|.+.++++.+..+.+..++..+..++...|++++|..
T Consensus 170 ----------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 227 (327)
T 3cv0_A 170 ----------------------NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALD 227 (327)
T ss_dssp ----------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------------------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 2334445555555555555555555555555444455555556666666666666666
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-------------CHHHHHHHHHHHHhcCCHHHH
Q 036165 472 LFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-------------DLFVWGALLGACKNHGNIELA 537 (566)
Q Consensus 472 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-------------~~~~~~~l~~~~~~~g~~~~A 537 (566)
.++++.+. .+.+...+..+..+|.+.|++++|.+.++++. ..| +..+|..+..++.+.|++++|
T Consensus 228 ~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 305 (327)
T 3cv0_A 228 AYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV 305 (327)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence 66665543 12234555556666666666666666665554 112 245566666666666666666
Q ss_pred HHHHHHHhhhC
Q 036165 538 EIAAKHLSELE 548 (566)
Q Consensus 538 ~~~~~~~~~~~ 548 (566)
...++++++..
T Consensus 306 ~~~~~~~l~~~ 316 (327)
T 3cv0_A 306 ELTYAQNVEPF 316 (327)
T ss_dssp HHHTTCCSHHH
T ss_pred HHHHHHHHHhc
Confidence 66666555443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=4e-15 Score=149.77 Aligned_cols=259 Identities=10% Similarity=-0.043 Sum_probs=148.2
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHH---HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----ccCchH
Q 036165 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISG---LVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACA----SAANMR 367 (566)
Q Consensus 295 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~----~~~~~~ 367 (566)
++++|.+.|++..+.. +-++..+..+..+ +...++.++|++.+++.++.. +.+...+..+...+. ..++.+
T Consensus 153 ~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~ 230 (472)
T 4g1t_A 153 QNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEG 230 (472)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------C
T ss_pred cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHH
Confidence 4555555555554431 1122233222222 223344455555555554432 222233333322222 223444
Q ss_pred HHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHh----------------
Q 036165 368 RGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--R-NTVTWNSMIFGCAN---------------- 428 (566)
Q Consensus 368 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~---------------- 428 (566)
+|...++...+..+. +..++..+...|.+.|++++|...+++..+ | +..++..+..+|..
T Consensus 231 ~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~ 309 (472)
T 4g1t_A 231 EGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGK 309 (472)
T ss_dssp HHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CH
T ss_pred HHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 555555555544322 344455555555555555555555555442 2 23334333333321
Q ss_pred ---cCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh--hHHHHHHH-HHHhcCCH
Q 036165 429 ---HGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT--EHYACMVD-LLGRAGRL 502 (566)
Q Consensus 429 ---~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~-~~~~~g~~ 502 (566)
.+..+.|...+++..+..+.+..++..+...+...|++++|+..|+++.+. ...+.. ..+..+.. .+...|++
T Consensus 310 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (472)
T 4g1t_A 310 RKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCE 388 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCH
Confidence 234577888888888877777888999999999999999999999999865 322221 12333333 24577999
Q ss_pred HHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 503 AEAYEMIKTMS-TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 503 ~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
++|...+++.. ..|+...+.. ..+.+..++++.++.+|+++.++..||.+|..+|
T Consensus 389 ~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g 444 (472)
T 4g1t_A 389 DKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNE 444 (472)
T ss_dssp HHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 99999999876 4565433222 2345677888889999999999999999998765
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-15 Score=140.17 Aligned_cols=247 Identities=11% Similarity=0.068 Sum_probs=122.9
Q ss_pred HHhcCCHHHHHHHHHhcCCCCh----hhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHH
Q 036165 224 YSKCGSVEKAKKVFDEMVEKDI----VAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMV 299 (566)
Q Consensus 224 ~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 299 (566)
....|++..|+..++.....++ .....+.++|...|++++|+..++. .-+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 4445666666666665544332 2233455666666666666654433 1244555666666666666666666
Q ss_pred HHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 036165 300 SKLFQLMRAKGVEP-DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV 378 (566)
Q Consensus 300 ~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 378 (566)
.+.++++...+..| +...+..+..++...|++++|++.+++ +.+...+..+...+.+.|++++|...++.+.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66666666554333 344445555666666666666666654 23444444455555555555555555555544
Q ss_pred hCCCCcH-hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHH
Q 036165 379 MGVEGDL-HVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVL 457 (566)
Q Consensus 379 ~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 457 (566)
..+.... ......+..+. ..|++++|..+|+++.+..+.+...++.+.
T Consensus 159 ~~p~~~~~~l~~a~~~l~~-------------------------------~~~~~~eA~~~~~~~l~~~p~~~~~~~~la 207 (291)
T 3mkr_A 159 QDEDATLTQLATAWVSLAA-------------------------------GGEKLQDAYYIFQEMADKCSPTLLLLNGQA 207 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHH-------------------------------CTTHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred hCcCcHHHHHHHHHHHHHh-------------------------------CchHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 4321100 00011122222 234455555555555544444444555555
Q ss_pred HHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH-HHHHHHhcC
Q 036165 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAE-AYEMIKTMS 513 (566)
Q Consensus 458 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~ 513 (566)
.++.+.|++++|+..++++.+. .+-++.++..++.++...|+.++ +.++++++.
T Consensus 208 ~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~ 262 (291)
T 3mkr_A 208 ACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5555555555555555554443 12234444455555555555443 334444443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-16 Score=144.14 Aligned_cols=236 Identities=9% Similarity=-0.040 Sum_probs=170.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036165 281 VTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPAC 360 (566)
Q Consensus 281 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 360 (566)
..+..+...+...|++++|...++++.+.. .+...|..+..++...|++++|+..+++..+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----------------- 66 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVE----------------- 66 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHH-----------------
Confidence 344455555555555555555555555544 4455555555555555555555555555443
Q ss_pred HccCchHHHHHHHHHHHHhCCC--Cc----HhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCCh
Q 036165 361 ASAANMRRGKEIHGCAIVMGVE--GD----LHVRSALVDMYAKCGFISEARTLFDKMSE--RNTVTWNSMIFGCANHGYC 432 (566)
Q Consensus 361 ~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 432 (566)
.... ++ ...+..+...|.+.|++++|...|++..+ |+. ..+...|++
T Consensus 67 ------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~ 121 (258)
T 3uq3_A 67 ------------------QGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNA 121 (258)
T ss_dssp ------------------HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHH
T ss_pred ------------------hCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHH
Confidence 2211 01 45666677777777777777777776654 332 345566778
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036165 433 DEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512 (566)
Q Consensus 433 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 512 (566)
++|...++++....+.+...+..+...+...|++++|...++++.+. .+.+...+..++.+|.+.|++++|...++++
T Consensus 122 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 122 EKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 88888888888766666778888999999999999999999999875 2446788889999999999999999999988
Q ss_pred C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC------CCCchHHHHHHHHH
Q 036165 513 S--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELE------PESAANNMLLTDLY 562 (566)
Q Consensus 513 ~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~ 562 (566)
. .+.+..+|..+..++.+.|++++|...++++++.. |++......|..++
T Consensus 200 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~~ 257 (258)
T 3uq3_A 200 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 257 (258)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHTT
T ss_pred HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHhh
Confidence 7 34568889999999999999999999999999988 99988888887653
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-15 Score=140.07 Aligned_cols=248 Identities=11% Similarity=-0.062 Sum_probs=141.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 036165 282 TWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPT--SATISSILPA 359 (566)
Q Consensus 282 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~ll~~ 359 (566)
.+......+...|++++|...++++.+.. +.+...+..+..++...|++++|+..+++..+.+..++ ...+..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34455666677777777777777776652 22444666677777777777777777777766321111 1224455555
Q ss_pred HHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036165 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELF 439 (566)
Q Consensus 360 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 439 (566)
+...|++++|...++.+.+..+. +.. .|..+...|...|++++|...|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~-~~~-------------------------------~~~~l~~~~~~~~~~~~A~~~~ 131 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTT-RLD-------------------------------MYGQIGSYFYNKGNFPLAIQYM 131 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CTH-------------------------------HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcc-cHH-------------------------------HHHHHHHHHHHccCHHHHHHHH
Confidence 55555555555555555554322 333 4444444445555555555555
Q ss_pred HHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC---HHHHHHHHHhcC---
Q 036165 440 NQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGR---LAEAYEMIKTMS--- 513 (566)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~--- 513 (566)
++..+..+.+...+..+...+...+++++|.+.++++.+. .+.+...+..+..++...|+ +++|...++++.
T Consensus 132 ~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 132 EKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp GGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred HHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 5444443344444444442222333555555555555543 12223444445555555554 444555554443
Q ss_pred -CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhh
Q 036165 514 -TEPD------LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 514 -~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 564 (566)
..|+ ..+|..+...|...|++++|...++++++.+|+++.+...++.+...
T Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 210 APGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred hcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 1122 24677788889999999999999999999999999999988877643
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-17 Score=169.55 Aligned_cols=112 Identities=13% Similarity=0.190 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHhhh---CCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 036165 247 AMNAMVSGYVQRGLATEALNLVEEIGT---PRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVIS 323 (566)
Q Consensus 247 ~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 323 (566)
+||++|++|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..|||++|.
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 555555555555555555555554432 34555555555555555555555555555555555555555555555555
Q ss_pred HHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036165 324 GLVHNFCN-DEAFDTFKEMLSQGFCPTSATISSILP 358 (566)
Q Consensus 324 ~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~ll~ 358 (566)
++++.|+. ++|.++|++|.+.|+.||..+|+.++.
T Consensus 209 glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~ 244 (1134)
T 3spa_A 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLS 244 (1134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCC
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccC
Confidence 55555553 455555555555555555555555543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.9e-15 Score=131.83 Aligned_cols=180 Identities=13% Similarity=0.012 Sum_probs=101.8
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 036165 384 DLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTAC 460 (566)
Q Consensus 384 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 460 (566)
+...+..+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|+..+++..+..|.+...+..+..++
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAY 83 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 334445555555555566666555555443 23445555555555566666666666665555555555555555555
Q ss_pred hcc-----------CChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHH
Q 036165 461 CHV-----------GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGA 527 (566)
Q Consensus 461 ~~~-----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~ 527 (566)
... |++++|+..++++.+. .+-+...+..+..+|...|++++|...++++. . .++..+..+..+
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~ 160 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence 555 6666666666666543 12234555555666666666666666665554 3 455556666666
Q ss_pred HHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 528 CKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
+...|++++|+..++++++.+|+++..+..++.+|...|
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g 199 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKG 199 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence 666666666666666666666666666666666655443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-14 Score=140.49 Aligned_cols=245 Identities=8% Similarity=0.049 Sum_probs=190.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCc-hHHHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 036165 316 VSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAAN-MRRGKEIHGCAIVMGVEGDLHVRSALVDM 394 (566)
Q Consensus 316 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 394 (566)
..|..+..++...|++++|+..+++.++.. +-+...+..+..++...|+ +++|...++++++..+. +...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 345555666666677777777777766543 3345556666666777775 77777777777776544 67778888888
Q ss_pred HHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc-cCChHHH-
Q 036165 395 YAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCH-VGLVELG- 469 (566)
Q Consensus 395 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a- 469 (566)
+.+.|++++|+..|+++.+ .+...|..+..++...|++++|+..|+++++..+.+...|+.+..++.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH
Confidence 8888899999888888774 5677888899999999999999999999998888888999999999988 5665777
Q ss_pred ----HHHHHHhHHhcCCCCChhHHHHHHHHHHhcC--CHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcC--------C-
Q 036165 470 ----QRLFNMMQEKYKIMPRTEHYACMVDLLGRAG--RLAEAYEMIKTMSTE-PDLFVWGALLGACKNHG--------N- 533 (566)
Q Consensus 470 ----~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g--------~- 533 (566)
+..+++++.. -+-+...|..+..+|.+.| ++++|.+.++++... .+...+..++.+|.+.| +
T Consensus 256 ~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~ 333 (382)
T 2h6f_A 256 LEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDI 333 (382)
T ss_dssp HHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence 4788888865 2335678888889898888 689999999887433 45677888888888764 2
Q ss_pred HHHHHHHHHHH-hhhCCCCchHHHHHHHHHhh
Q 036165 534 IELAEIAAKHL-SELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 534 ~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 564 (566)
.++|+.+++++ .+++|....+|..++..+..
T Consensus 334 ~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 334 LNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 58999999999 89999999999999988764
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=3e-15 Score=135.98 Aligned_cols=204 Identities=13% Similarity=0.019 Sum_probs=148.6
Q ss_pred HHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHH
Q 036165 359 ACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEA 435 (566)
Q Consensus 359 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A 435 (566)
.+...|++++|...++.+.+... .+...+..+...|.+.|++++|...++++.+ .+...+..+...+...|++++|
T Consensus 32 ~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 110 (243)
T 2q7f_A 32 RGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEA 110 (243)
T ss_dssp ----------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHH
Confidence 33334444444444444333222 1345555666666666677777666665543 3556777778888888888899
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--
Q 036165 436 IELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-- 513 (566)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 513 (566)
.+.++++.+..+.+...+..+...+...|++++|...++++.+. .+.+...+..++.+|.+.|++++|...++++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 111 KDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ 188 (243)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888877778888888999999999999999999998875 24467788889999999999999999998876
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhc
Q 036165 514 TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565 (566)
Q Consensus 514 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 565 (566)
.+.+..+|..+..+|...|++++|...++++++.+|+++..+..++.+....
T Consensus 189 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 189 DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 3456788999999999999999999999999999999999998887766543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.8e-14 Score=139.64 Aligned_cols=249 Identities=10% Similarity=0.058 Sum_probs=145.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCCh---HHHHHHhccCCCCCcchHHHHHHHHHhcC-
Q 036165 83 ERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNI---HHARMLFDEIPKTNIHRWIALTGAYARRG- 158 (566)
Q Consensus 83 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g- 158 (566)
.+...+.+.|+++.|.++++.+.+.|. +..+..|-.+|...|+. ++|...|++..+.+...+..+...+...|
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Confidence 345666778999999999999988873 33344455666667777 89999998887777777888887666655
Q ss_pred ----ChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCCh---hHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC---
Q 036165 159 ----YHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI---GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCG--- 228 (566)
Q Consensus 159 ----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g--- 228 (566)
++++|+..|++..+.|.. ..+..+...+...+.. ..+.+.+......| +......|...|...+
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 778999999999887643 2555555555544432 34555555555554 3445556777777776
Q ss_pred -CHHHHHHHHHhcCCCChhhHHHHHHHHHHcC---ChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcC----CCHHHHH
Q 036165 229 -SVEKAKKVFDEMVEKDIVAMNAMVSGYVQRG---LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKS----GDQVMVS 300 (566)
Q Consensus 229 -~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----~~~~~a~ 300 (566)
+.+.+..+++.....++..+..|...|...| +.++|+..|++..+.| .++...+..+...|... +++++|.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 3445555566666666677888888888888 7888888888877766 34444444555555544 5777777
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHH-H--HhcCChhHHHHHHHHHHHCC
Q 036165 301 KLFQLMRAKGVEPDVVSWTSVISG-L--VHNFCNDEAFDTFKEMLSQG 345 (566)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~ 345 (566)
..|+... . -++..+..+... + ...+++++|+..|++..+.|
T Consensus 238 ~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g 281 (452)
T 3e4b_A 238 ALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD 281 (452)
T ss_dssp HHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC
Confidence 7777766 2 244555555554 2 34566667777766666554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.65 E-value=5e-14 Score=128.67 Aligned_cols=173 Identities=13% Similarity=-0.004 Sum_probs=133.0
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhh--cCCCCHHHHHHHHH
Q 036165 384 DLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEE--RKKLDHLSFTAVLT 458 (566)
Q Consensus 384 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~ 458 (566)
+...+..+...|...|++++|...++++.+ .+...+..+...|...|++++|.+.++++.+ ..+.+...+..+..
T Consensus 70 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~ 149 (252)
T 2ho1_A 70 SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL 149 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHH
Confidence 344555556666666666666666665542 3455667777777778888888888888776 34445667888888
Q ss_pred HHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHH
Q 036165 459 ACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIEL 536 (566)
Q Consensus 459 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~ 536 (566)
++...|++++|...++++.+. . +.+...+..++.+|.+.|++++|...++++. .+.+...+..+...+...|+.++
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (252)
T 2ho1_A 150 VSLQMKKPAQAKEYFEKSLRL-N-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDT 227 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-C-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc-C-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHH
Confidence 888999999999999988875 2 3457788889999999999999999999876 23567778888899999999999
Q ss_pred HHHHHHHHhhhCCCCchHHHHH
Q 036165 537 AEIAAKHLSELEPESAANNMLL 558 (566)
Q Consensus 537 A~~~~~~~~~~~p~~~~~~~~l 558 (566)
|...++++++..|+++.....+
T Consensus 228 A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 228 AASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHH
Confidence 9999999999999998876654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=3e-16 Score=161.24 Aligned_cols=129 Identities=8% Similarity=0.018 Sum_probs=116.5
Q ss_pred CccHHHHHHHHHHHhcCCCHHHHHHHHHHHH---HcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 036165 277 KPNVVTWNTLISGFSKSGDQVMVSKLFQLMR---AKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATI 353 (566)
Q Consensus 277 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 353 (566)
..-..||+++|++|++.|++++|.++|++|. ..|+.||+.+||+||.+|++.|+.++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 4456799999999999999999999998875 4589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCch-HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 036165 354 SSILPACASAANM-RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR 405 (566)
Q Consensus 354 ~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 405 (566)
+++|.++++.|+. +.|.+++++|.+.|+.||..+|++++....+.+-++...
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vr 256 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVH 256 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHG
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHH
Confidence 9999999999985 789999999999999999999999988776654333333
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.2e-14 Score=130.31 Aligned_cols=224 Identities=11% Similarity=0.004 Sum_probs=148.4
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC--CCC----hhhH
Q 036165 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV--EPD----VVSW 318 (566)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 318 (566)
...|..+...+...|++++|+..|++..+.. .+...+..+...+...|++++|.+.++.+.+... .++ ...|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4568889999999999999999999998876 7788899999999999999999999999876421 112 5778
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc
Q 036165 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC 398 (566)
Q Consensus 319 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 398 (566)
..+..++...|++++|...|++..+. .|+. ..+...|++++|...++.+.+..+. +..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~------------ 140 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAE------------ 140 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHH------------
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHH------------
Confidence 88888889999999999999888774 3442 2334445555555555555543211 233
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 036165 399 GFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478 (566)
Q Consensus 399 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 478 (566)
.+..+...+...|++++|...++++.+..+.+..++..+..++...|++++|...++++.+
T Consensus 141 -------------------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 141 -------------------EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp -------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3444455555555555555555555554444555555555555555566666655555554
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 479 KYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 479 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
. .+.+...+..+..+|.+.|++++|...++++.
T Consensus 202 ~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 202 K--DPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred h--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3 12234455555555556666666655555544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.7e-14 Score=125.67 Aligned_cols=205 Identities=12% Similarity=0.009 Sum_probs=154.4
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHh
Q 036165 352 TISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCAN 428 (566)
Q Consensus 352 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 428 (566)
.+..+...+...|++++|...++.+.+.... +...+..+...|...|++++|...+++..+ .+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 3444444555555555555555555544322 455666677777777777777777776553 355677778888888
Q ss_pred c-CChHHHHHHHHHhhhc--CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 036165 429 H-GYCDEAIELFNQMEER--KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505 (566)
Q Consensus 429 ~-~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 505 (566)
. |++++|...++++.+. .+.+...+..+..++...|++++|...++++.+. .+.+...+..++.+|.+.|++++|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHH
Confidence 8 8888998888888873 3334677888889999999999999999998875 234577888999999999999999
Q ss_pred HHHHHhcC--CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHH
Q 036165 506 YEMIKTMS--TE-PDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLT 559 (566)
Q Consensus 506 ~~~~~~~~--~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 559 (566)
...++++. .+ .+...+..+...+...|+.++|...++.+.+..|+++.+...+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVLT 223 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHhc
Confidence 99999876 23 56777877778889999999999999999999999998877664
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-14 Score=129.30 Aligned_cols=208 Identities=14% Similarity=0.026 Sum_probs=117.3
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHH
Q 036165 313 PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALV 392 (566)
Q Consensus 313 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 392 (566)
++...+..+...+...|++++|+..|++.++.. +.+...+..+..++...|++++|...++++++..+. +...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 345556666666666666666666666665542 233444445555555555555555555555544322 333444444
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHH
Q 036165 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRL 472 (566)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 472 (566)
.+|.+.+. . ... .+...|++++|+..|++..+..|.+...+..+..++...|++++|+..
T Consensus 81 ~~~~~~~~---------~--~~~---------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~ 140 (217)
T 2pl2_A 81 EAYVALYR---------Q--AED---------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEAS 140 (217)
T ss_dssp HHHHHHHH---------T--CSS---------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhhh---------h--hhh---------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHH
Confidence 44433300 0 000 001117777777777777776666777777777777788888888888
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036165 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLS 545 (566)
Q Consensus 473 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 545 (566)
|+++.+. . .++..+..+..+|...|++++|...++++. .+.+...+..+...+...|++++|+..++++.
T Consensus 141 ~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 141 LKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8877776 4 566777777777888888888887777766 23456677777777777788888877777654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.4e-13 Score=125.69 Aligned_cols=246 Identities=9% Similarity=-0.028 Sum_probs=167.6
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC--hhhHHHHH
Q 036165 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD--VVSWTSVI 322 (566)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li 322 (566)
...+......+...|++++|+..|++..+.. +.+...+..+...+...|++++|.+.++.+.+.+..++ ...|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3456667788999999999999999998754 23455788889999999999999999999988432222 23488999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHH
Q 036165 323 SGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFIS 402 (566)
Q Consensus 323 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 402 (566)
.++...|++++|+..|++..+.. +.+...+..+...+ ...|+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~-----------------------------------~~~~~~~ 125 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYF-----------------------------------YNKGNFP 125 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH-----------------------------------HHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHH-----------------------------------HHccCHH
Confidence 99999999999999999998853 33344554444444 4455555
Q ss_pred HHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCC---hHHHHHHHHHh
Q 036165 403 EARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGL---VELGQRLFNMM 476 (566)
Q Consensus 403 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~ 476 (566)
+|...|++..+ .+...|..+...+...+++++|.+.|+++.+..+.+...+..+..++...|+ +++|...++++
T Consensus 126 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 126 LAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 55555555543 2344455555233334477777777777777666666777777777777776 77777777777
Q ss_pred HHhcCCCCCh------hHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHH
Q 036165 477 QEKYKIMPRT------EHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGA 527 (566)
Q Consensus 477 ~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~ 527 (566)
.+...-.|+. ..|..+...|.+.|++++|.+.++++. ..| +...+..+...
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 206 IEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhh
Confidence 6542222332 466677777888888888888887776 233 45445444433
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.64 E-value=7.9e-12 Score=128.48 Aligned_cols=437 Identities=10% Similarity=0.028 Sum_probs=290.4
Q ss_pred hHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCC--C-CcchHHHHHHHHHhcCC---hHHHHHHH
Q 036165 94 LQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPK--T-NIHRWIALTGAYARRGY---HQEAVTVF 167 (566)
Q Consensus 94 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~---~~~A~~~~ 167 (566)
..+....++..++... .|...|..++..+.+.+.++.++.+|+++.. | ....|...+..-.+.|+ ++.+..+|
T Consensus 48 ~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 3444555666666653 6888999999999999999999999988765 3 45578888888888888 99999999
Q ss_pred HHhHHCC-CCCCcchHHHHHHHHcccCCh--------hHHHHHHHHHHH-cCC-CC-chhHHHHHHHHHHh---------
Q 036165 168 HEMHIQG-LKQNIFVIPSVLKACGHLSDI--------GTGEKIHSLVLK-HSF-GT-DAFVVSSLIDMYSK--------- 226 (566)
Q Consensus 168 ~~m~~~g-~~p~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~-~~~~~~~l~~~~~~--------- 226 (566)
++..... ..|++..|..-+....+.++. +...++|+..+. .|. .+ +..+|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9988763 137777777776655554443 334567777654 355 44 34677777765442
Q ss_pred cCCHHHHHHHHHhcCCCC----hhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHH
Q 036165 227 CGSVEKAKKVFDEMVEKD----IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKL 302 (566)
Q Consensus 227 ~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 302 (566)
.++++.+..+|+....-. ..+|......--..+. ..+..++.+. ..+++.|...
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---------------------~~~y~~Ar~~ 264 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---------------------SAQYMNARSL 264 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH---------------------HHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh---------------------hHHHHHHHHH
Confidence 335677777887775421 1223222111111011 1111111110 0122333444
Q ss_pred HHHHHH--cCCC---------------C--C------hhhHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCCCH
Q 036165 303 FQLMRA--KGVE---------------P--D------VVSWTSVISGLVHNF-------CNDEAFDTFKEMLSQGFCPTS 350 (566)
Q Consensus 303 ~~~~~~--~~~~---------------~--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~ 350 (566)
+.++.. .++. | + ...|...+.---..+ ..+.+..+|++.+.. ++-+.
T Consensus 265 ~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~ 343 (679)
T 4e6h_A 265 YQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAP 343 (679)
T ss_dssp HHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCH
T ss_pred HHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCH
Confidence 433221 0110 1 0 123444443322222 123456778888765 35567
Q ss_pred HHHHHHHHHHHccCchHHHH-HHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------------CC-
Q 036165 351 ATISSILPACASAANMRRGK-EIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE-------------RN- 415 (566)
Q Consensus 351 ~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~- 415 (566)
..+...+.-+...|+.+.|. .+++...... +.+...+..++....+.|+++.|..+|+++.+ |+
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~ 422 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTN 422 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcc
Confidence 77777777778888888896 9999998754 34677778888888999999999999987764 21
Q ss_pred -----------hhHHHHHHHHHHhcCChHHHHHHHHHhhhc-CCCCHHHHHHHHHHHhcc-CChHHHHHHHHHhHHhcCC
Q 036165 416 -----------TVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHV-GLVELGQRLFNMMQEKYKI 482 (566)
Q Consensus 416 -----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~ 482 (566)
...|...+....+.|+.+.|..+|.+..+. .......|...+..-.+. ++++.|.++|+...+. +
T Consensus 423 ~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~ 500 (679)
T 4e6h_A 423 ESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--F 500 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--H
T ss_pred hhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--C
Confidence 235777788878889999999999999886 333445555444333344 4599999999999987 3
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHH
Q 036165 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMST-EP----DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNML 557 (566)
Q Consensus 483 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 557 (566)
+-+...|...++.....|+.+.|..+|+++.. .| ....|...+..-.+.|+.+.+..+.+++.+..|+++..-..
T Consensus 501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f 580 (679)
T 4e6h_A 501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEF 580 (679)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 44666788889989999999999999999883 24 35678888888899999999999999999999998765443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-13 Score=126.84 Aligned_cols=229 Identities=10% Similarity=-0.042 Sum_probs=164.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCchHHHHHHHHHHHHhCCCCcHhHHHH
Q 036165 315 VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS----AANMRRGKEIHGCAIVMGVEGDLHVRSA 390 (566)
Q Consensus 315 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 390 (566)
..++..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...+++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 334444555555555666666666555552 233444455555555 666666666666665554 4556666
Q ss_pred HHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHh
Q 036165 391 LVDMYAK----CGFISEARTLFDKMSE-RNTVTWNSMIFGCAN----HGYCDEAIELFNQMEERKKLDHLSFTAVLTACC 461 (566)
Q Consensus 391 l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 461 (566)
+..+|.. .+++++|+..|++..+ .+...+..+...|.. .+++++|...|++..+.. +...+..+...+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence 6777777 7777777777776654 456677777777777 888888888888887753 5667777788887
Q ss_pred c----cCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---
Q 036165 462 H----VGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR----AGRLAEAYEMIKTMSTEPDLFVWGALLGACKN--- 530 (566)
Q Consensus 462 ~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~--- 530 (566)
. .+++++|...+++..+. + +...+..+..+|.. .+++++|...+++.....+...+..+...|..
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~ 233 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEG 233 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS
T ss_pred cCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCC
Confidence 7 88999999999998875 3 45678888888988 99999999999988744557788888888988
Q ss_pred -cCCHHHHHHHHHHHhhhCCCCchHH
Q 036165 531 -HGNIELAEIAAKHLSELEPESAANN 555 (566)
Q Consensus 531 -~g~~~~A~~~~~~~~~~~p~~~~~~ 555 (566)
.+++++|...++++.+.+|++....
T Consensus 234 ~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 234 VTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp SSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred cccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 8999999999999999998765544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.62 E-value=8.9e-14 Score=138.29 Aligned_cols=377 Identities=8% Similarity=-0.015 Sum_probs=234.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCCh---hHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 036165 149 ALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI---GTGEKIHSLVLKHSFGTDAFVVSSLIDMYS 225 (566)
Q Consensus 149 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 225 (566)
.+...+.+.|++++|+++|++..+.| +...+..+...+...|+. ++|.+.+++..+. +...+..|..++.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35667788899999999999988765 334444555556667777 8899998888754 4555566666555
Q ss_pred hcC-----CHHHHHHHHHhcCCC-ChhhHHHHHHHHHHcCChhH---HHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCH
Q 036165 226 KCG-----SVEKAKKVFDEMVEK-DIVAMNAMVSGYVQRGLATE---ALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQ 296 (566)
Q Consensus 226 ~~g-----~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 296 (566)
..| ++++|...|++..++ +...+..|...|...+..++ +.+.+......|. ......+...|...+.+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCc
Confidence 555 778888888887544 45577788888877665433 4444544444432 33455566666666655
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----CchHHH
Q 036165 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF---CNDEAFDTFKEMLSQGFCPTSATISSILPACASA----ANMRRG 369 (566)
Q Consensus 297 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----~~~~~a 369 (566)
+.+........+.-...++..+..+...|...| +.++|+..|++..+.| .++...+..+...|... +++++|
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 444444333333222334557888888888888 8888999998888877 55555555666666544 688888
Q ss_pred HHHHHHHHHhCCCCcHhHHHHHHHH-H--HhcCCHHHHHHHHHhcCC-CChhHHHHHHHHHHhcC-----ChHHHHHHHH
Q 036165 370 KEIHGCAIVMGVEGDLHVRSALVDM-Y--AKCGFISEARTLFDKMSE-RNTVTWNSMIFGCANHG-----YCDEAIELFN 440 (566)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~-----~~~~A~~~~~ 440 (566)
...++... .| ++..+..+..+ | ...+++++|...|++..+ .+...+..|...|. .| ++++|.++|+
T Consensus 237 ~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 237 QALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 88888877 33 45566666666 3 457888999888887765 45667777777776 44 8888888888
Q ss_pred HhhhcCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhc
Q 036165 441 QMEERKKLDHLSFTAVLTACCH----VGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR----AGRLAEAYEMIKTM 512 (566)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 512 (566)
+.. +.+...+..|...|.. ..++++|...|++..+. | ++.....|..+|.. ..++++|..++++.
T Consensus 312 ~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 312 KAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN-G---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp TTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT-T---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred HHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh-C---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 877 5566777777777765 34888888888888765 4 34456666776664 45788888888887
Q ss_pred CCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHhhhC
Q 036165 513 STEPDLFVWGALLGAC--KNHGNIELAEIAAKHLSELE 548 (566)
Q Consensus 513 ~~~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~ 548 (566)
....+......+-... ...++.++|..+.++-.+..
T Consensus 385 ~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 385 KAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp HTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 7554444433333332 23345666777776665543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-14 Score=143.08 Aligned_cols=290 Identities=12% Similarity=0.022 Sum_probs=164.1
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCc-c--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCCC-Chh
Q 036165 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP-N--VVTWNTLISGFSKSGDQVMVSKLFQLMRAK----GVEP-DVV 316 (566)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 316 (566)
...+......+...|++++|...|++..+.+... . ...+..+...+...|++++|...+++..+. +..| ...
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 3445556666677777777777777766542111 1 245556666666777777777776665432 1111 134
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHH
Q 036165 317 SWTSVISGLVHNFCNDEAFDTFKEMLSQGF-CPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMY 395 (566)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 395 (566)
++..+...+...|++++|...+++..+... .++.. ....++..+...|
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~ 137 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVY 137 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH-------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccc-------------------------------chHHHHHHHHHHH
Confidence 555566666666666666666666543210 00100 0122333444444
Q ss_pred HhcCC--------------------HHHHHHHHHhcCC-----C----ChhHHHHHHHHHHhcCChHHHHHHHHHhhhc-
Q 036165 396 AKCGF--------------------ISEARTLFDKMSE-----R----NTVTWNSMIFGCANHGYCDEAIELFNQMEER- 445 (566)
Q Consensus 396 ~~~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 445 (566)
...|+ +++|...+++..+ + ...++..+...|...|++++|...+++..+.
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 138 HAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 44444 4444444443321 1 1234556666666777777777777766654
Q ss_pred -CCCC----HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--
Q 036165 446 -KKLD----HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR----TEHYACMVDLLGRAGRLAEAYEMIKTMST-- 514 (566)
Q Consensus 446 -~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 514 (566)
..++ ..++..+..++...|++++|...++++.+...-.++ ..++..+...|...|++++|...++++..
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 1122 125666777777777777777777776543111111 34566777777777777777777776651
Q ss_pred --CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC------CCCchHHHHHHHHHhhc
Q 036165 515 --EPD----LFVWGALLGACKNHGNIELAEIAAKHLSELE------PESAANNMLLTDLYANA 565 (566)
Q Consensus 515 --~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~ 565 (566)
.++ ..++..+...|...|++++|...++++++.. |.....+..++.+|...
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 360 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVL 360 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHh
Confidence 122 4456677777777888888888888777642 33355666677766554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-13 Score=126.76 Aligned_cols=222 Identities=11% Similarity=-0.045 Sum_probs=136.6
Q ss_pred CChhHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 036165 329 FCNDEAFDTFKEMLSQGFC---PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR 405 (566)
Q Consensus 329 g~~~~A~~~~~~m~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 405 (566)
|++++|+..|+++.+.... .+...+..+...+...|++++|...++.+.+..+. +...+..+...|...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHH
Confidence 4445555555555443210 12233444455555555555555555555554332 4556666666667777777777
Q ss_pred HHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCC
Q 036165 406 TLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482 (566)
Q Consensus 406 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 482 (566)
..|++..+ .+...+..+...|...|++++|...|+++.+..+.+.. ....+..+...|++++|...+++.... .
T Consensus 98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~~~~~--~ 174 (275)
T 1xnf_A 98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF-RSLWLYLAEQKLDEKQAKEVLKQHFEK--S 174 (275)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCHHHHHHHHHHHHHH--S
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHhcCHHHHHHHHHHHHhc--C
Confidence 77666553 34566777777777777777777777777765444432 333333445667888888888777664 2
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-CC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHH
Q 036165 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE-PD-----LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANN 555 (566)
Q Consensus 483 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 555 (566)
+++...+ .++..+...++.++|.+.++++... |+ ..+|..+...|.+.|++++|...++++++.+|++...+
T Consensus 175 ~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 252 (275)
T 1xnf_A 175 DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 252 (275)
T ss_dssp CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH
Confidence 3333333 3666667777777888887776622 21 46677777888888888888888888888888775543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=5.2e-14 Score=130.32 Aligned_cols=240 Identities=9% Similarity=-0.101 Sum_probs=133.5
Q ss_pred CCHHHHHHHHHHHHHcCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHH
Q 036165 294 GDQVMVSKLFQLMRAKGVE---PDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGK 370 (566)
Q Consensus 294 ~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 370 (566)
|++++|...++++.+.... .+...+..+..++...|++++|...|+++.+.. +.+...+..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 4444444444444443110 123344444455555555555555555554432 223444555555555555555555
Q ss_pred HHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCC
Q 036165 371 EIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKL 448 (566)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 448 (566)
..++.+++..+. +...+..+..+|.+.|++++|...|+++.+ |+.......+..+...|++++|...+++.....++
T Consensus 98 ~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (275)
T 1xnf_A 98 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 176 (275)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 555555554322 345566666666666666666666666553 43333333444445567777777777777666555
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHH
Q 036165 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR-----TEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLFVWG 522 (566)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~ 522 (566)
+...+. ++..+...++.++|...++.+... .|+ ...+..++.+|.+.|++++|...++++. ..|+. +.
T Consensus 177 ~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~ 250 (275)
T 1xnf_A 177 EQWGWN-IVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--FV 250 (275)
T ss_dssp CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--CH
T ss_pred chHHHH-HHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--HH
Confidence 555444 555666677777777777766532 221 4667777788888888888888888776 33422 33
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 036165 523 ALLGACKNHGNIELAEIAA 541 (566)
Q Consensus 523 ~l~~~~~~~g~~~~A~~~~ 541 (566)
....++...|++++|+..+
T Consensus 251 ~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhhHHHH
Confidence 3355666777777777665
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-13 Score=118.19 Aligned_cols=168 Identities=13% Similarity=0.019 Sum_probs=147.9
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 036165 384 DLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTAC 460 (566)
Q Consensus 384 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 460 (566)
+..+|..+...|.+.|++++|+..|++..+ .+..+|..+..+|.+.|++++|...+++.....+.+...+..+...+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 567788889999999999999999988764 45678888999999999999999999999888888888899999999
Q ss_pred hccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 036165 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAE 538 (566)
Q Consensus 461 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~ 538 (566)
...++++.+...+.++... .+.+...+..+..+|.+.|++++|.+.|+++. .+.+..+|..+..+|.+.|++++|+
T Consensus 84 ~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999875 34467788899999999999999999999887 3457888999999999999999999
Q ss_pred HHHHHHhhhCCCCch
Q 036165 539 IAAKHLSELEPESAA 553 (566)
Q Consensus 539 ~~~~~~~~~~p~~~~ 553 (566)
..++++++.+|+++.
T Consensus 162 ~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 162 KYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHTTHHHHH
T ss_pred HHHHHHHhCCccCHH
Confidence 999999999998754
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.4e-14 Score=137.70 Aligned_cols=271 Identities=12% Similarity=-0.013 Sum_probs=162.7
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CC-CCChhh
Q 036165 247 AMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNV----VTWNTLISGFSKSGDQVMVSKLFQLMRAK----GV-EPDVVS 317 (566)
Q Consensus 247 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~ 317 (566)
.+..+...+...|++++|+..|++..+.+.. +. ..+..+...+...|++++|...+++..+. +. ......
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3445556666777777777777776654211 22 35566666666677777777776665432 11 112345
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCC-CCcHhHHHHHHHHHH
Q 036165 318 WTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV-EGDLHVRSALVDMYA 396 (566)
Q Consensus 318 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 396 (566)
+..+...|...|++++|...+++..+... +.+. .....++..+...|.
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLAR-------------------------------QLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhhchHHHHHHHHHHHHHHH
Confidence 55566666666666666666666543200 0000 011233444455555
Q ss_pred hcCC-----------------HHHHHHHHHhcCC-----C----ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcC--CC
Q 036165 397 KCGF-----------------ISEARTLFDKMSE-----R----NTVTWNSMIFGCANHGYCDEAIELFNQMEERK--KL 448 (566)
Q Consensus 397 ~~g~-----------------~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~ 448 (566)
..|+ +++|...+++..+ . ....+..+...|...|++++|...+++..+.. .+
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 5555 5555555444321 1 12356666677777777777777777776651 12
Q ss_pred C----HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CC
Q 036165 449 D----HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP----RTEHYACMVDLLGRAGRLAEAYEMIKTMST----EP 516 (566)
Q Consensus 449 ~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p 516 (566)
+ ..++..+..++...|++++|...++++.+...-.. ...++..+..+|...|++++|...++++.. .+
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 2 12677777788888888888888877765411111 145667788888888888888888887651 11
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Q 036165 517 D----LFVWGALLGACKNHGNIELAEIAAKHLSELEP 549 (566)
Q Consensus 517 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 549 (566)
+ ..++..+...|...|++++|...+++++++.+
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 2 34677777888888888888888888887654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-13 Score=131.59 Aligned_cols=211 Identities=10% Similarity=0.066 Sum_probs=186.3
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCC-HHHHHHHHHhcCC---CChhHHHHHHHHH
Q 036165 351 ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF-ISEARTLFDKMSE---RNTVTWNSMIFGC 426 (566)
Q Consensus 351 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~l~~~~ 426 (566)
..+..+...+...|++++|...++++++..+. +...++.+..++.+.|+ +++|+..|+++.+ .+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 45677778888999999999999999998755 78889999999999997 9999999998875 4678999999999
Q ss_pred HhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh-cCCHHHH
Q 036165 427 ANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR-AGRLAEA 505 (566)
Q Consensus 427 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A 505 (566)
...|++++|+..|+++.+..+.+...|..+..++...|++++|+..++++++. -+-+...|+.+..+|.+ .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchHH
Confidence 99999999999999999988889999999999999999999999999999986 23467889999999999 6665777
Q ss_pred -----HHHHHhcC--CCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhc
Q 036165 506 -----YEMIKTMS--TEPDLFVWGALLGACKNHG--NIELAEIAAKHLSELEPESAANNMLLTDLYANA 565 (566)
Q Consensus 506 -----~~~~~~~~--~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 565 (566)
++.++++. .+.+...|..+...+...| ++++|...++++ +.+|+++.++..|+.+|.++
T Consensus 255 ~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHH
Confidence 47788776 3346788999999998888 689999999998 99999999999999999864
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-12 Score=119.39 Aligned_cols=195 Identities=7% Similarity=-0.030 Sum_probs=151.1
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 036165 315 VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDM 394 (566)
Q Consensus 315 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 394 (566)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.... +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 4456666677777777777777777777653 345666777777777788888888888777776543 56677788888
Q ss_pred HHhcCCHHHHHHHHHhcCC----C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHH
Q 036165 395 YAKCGFISEARTLFDKMSE----R-NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELG 469 (566)
Q Consensus 395 ~~~~g~~~~A~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 469 (566)
|...|++++|...++++.+ | +...+..+...+...|++++|...++++.+..+.+...+..+...+...|++++|
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888887765 2 3456777788888889999999999888887777788888888888999999999
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 470 QRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 470 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
...++++.+. .+.+...+..+...+.+.|++++|.+.++++.
T Consensus 195 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 195 RQYYDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999888763 34456777888888888999999998888876
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-13 Score=122.99 Aligned_cols=193 Identities=10% Similarity=0.036 Sum_probs=105.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHH
Q 036165 317 SWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396 (566)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 396 (566)
.|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.... +...+..+...|.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHHH
Confidence 34444444445555555555555554432 223444444455555555555555555555544322 4455555666666
Q ss_pred hcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 036165 397 KCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLF 473 (566)
Q Consensus 397 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 473 (566)
..|++++|...++++.+ .+...+..+...+...|++++|...++++.+..+.+...+..+...+...|++++|...+
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666666665442 344556666666666777777777777766665556666677777777777777777777
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 474 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
+++.+. .+.+...+..+..+|.+.|++++|...++++.
T Consensus 183 ~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 183 AAVTEQ--DPGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 776654 23345566667777777777777777777665
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.55 E-value=5.8e-13 Score=119.02 Aligned_cols=182 Identities=13% Similarity=-0.004 Sum_probs=161.5
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 036165 384 DLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTAC 460 (566)
Q Consensus 384 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 460 (566)
+...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|.+.++++.+..+.+..++..+...+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 567788899999999999999999998764 45778899999999999999999999999988788889999999999
Q ss_pred hcc-CChHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHH
Q 036165 461 CHV-GLVELGQRLFNMMQEKYKIMPR-TEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIEL 536 (566)
Q Consensus 461 ~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~ 536 (566)
... |++++|...++++.+. +..|+ ...+..++.++.+.|++++|...++++. .+.+...+..+...+.+.|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 999 9999999999999873 33443 5778899999999999999999999887 33458889999999999999999
Q ss_pred HHHHHHHHhhhCC-CCchHHHHHHHHHhhcC
Q 036165 537 AEIAAKHLSELEP-ESAANNMLLTDLYANAG 566 (566)
Q Consensus 537 A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g 566 (566)
|...++++++..| +++..+..++.++...|
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALG 196 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 9999999999999 99999988888877654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=8.9e-12 Score=115.17 Aligned_cols=221 Identities=8% Similarity=-0.045 Sum_probs=126.1
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 036165 245 IVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSK----SGDQVMVSKLFQLMRAKGVEPDVVSWTS 320 (566)
Q Consensus 245 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 320 (566)
..++..+...+...|++++|+..|++..+. -+...+..+...+.. .+++++|...+++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 344555555555556666666666655542 233444455555555 566666666666655543 4555555
Q ss_pred HHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCchHHHHHHHHHHHHhCCCCcHhHHHHHH
Q 036165 321 VISGLVH----NFCNDEAFDTFKEMLSQGFCPTSATISSILPACAS----AANMRRGKEIHGCAIVMGVEGDLHVRSALV 392 (566)
Q Consensus 321 li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 392 (566)
+...|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+..+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 5566666 666666666666665543 44455555555555 566666666666555543 334445555
Q ss_pred HHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc-
Q 036165 393 DMYAK----CGFISEARTLFDKMSE-RNTVTWNSMIFGCAN----HGYCDEAIELFNQMEERKKLDHLSFTAVLTACCH- 462 (566)
Q Consensus 393 ~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~- 462 (566)
..|.. .+++++|...|++..+ .+...+..+...|.. .+++++|...|++..+.. +...+..+...+..
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcC
Confidence 55555 5666666666665443 344455556666666 666666666666665542 24455556666666
Q ss_pred ---cCChHHHHHHHHHhHHh
Q 036165 463 ---VGLVELGQRLFNMMQEK 479 (566)
Q Consensus 463 ---~g~~~~a~~~~~~~~~~ 479 (566)
.+++++|.+.+++..+.
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHHc
Confidence 66666666666666654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-12 Score=121.44 Aligned_cols=184 Identities=11% Similarity=0.081 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hh-HHHHHHHHHHhcCChHHHHHHHHHh
Q 036165 367 RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--RN-TV-TWNSMIFGCANHGYCDEAIELFNQM 442 (566)
Q Consensus 367 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~-~~~~l~~~~~~~~~~~~A~~~~~~~ 442 (566)
++|..++++.++.-.+.+...+..++..+.+.|++++|..+|++..+ |+ .. .|..++..+.+.|++++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 56666666666521122455666677777777777777777776654 32 32 6777777777777777777777777
Q ss_pred hhcCCCCHHHHHHHHHHHh-ccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CC-
Q 036165 443 EERKKLDHLSFTAVLTACC-HVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST----EP- 516 (566)
Q Consensus 443 ~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p- 516 (566)
.+..+.+...|...+.... ..|++++|.++|+++.+. .+-+...|..++..+.+.|++++|..+|+++.. .|
T Consensus 161 ~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~ 238 (308)
T 2ond_A 161 REDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH
Confidence 7665555555554433322 257777777777777764 233556677777777777777777777777662 22
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCc
Q 036165 517 -DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESA 552 (566)
Q Consensus 517 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 552 (566)
....|..++..+.+.|+.++|..+++++++..|+++
T Consensus 239 ~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 239 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 355677777777777777777777777777777654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-13 Score=131.08 Aligned_cols=272 Identities=12% Similarity=0.015 Sum_probs=166.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhhhCCCCcc---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCCC-ChhhHH
Q 036165 248 MNAMVSGYVQRGLATEALNLVEEIGTPRVKPN---VVTWNTLISGFSKSGDQVMVSKLFQLMRAK----GVEP-DVVSWT 319 (566)
Q Consensus 248 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~ 319 (566)
+......+...|++++|...|+++.+...... ...+..+...+...|++++|.+.+++..+. +..+ ....+.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 34445566667777777777777665421110 245556666666667777766666665432 1111 233455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc
Q 036165 320 SVISGLVHNFCNDEAFDTFKEMLSQGF-CPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC 398 (566)
Q Consensus 320 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 398 (566)
.+...+...|++++|...+++..+... .++.. ....++..+...|...
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~~~ 136 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVYHAK 136 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHHHHHc
Confidence 555566666666666666665543210 01100 0122344445555555
Q ss_pred CC--------------------HHHHHHHHHhcCC-----C----ChhHHHHHHHHHHhcCChHHHHHHHHHhhhc--CC
Q 036165 399 GF--------------------ISEARTLFDKMSE-----R----NTVTWNSMIFGCANHGYCDEAIELFNQMEER--KK 447 (566)
Q Consensus 399 g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~ 447 (566)
|+ +++|...+++..+ + ....+..+...+...|++++|...+++..+. ..
T Consensus 137 ~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 137 GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 55 5555555544321 1 1235666777778888888888888877655 11
Q ss_pred CC----HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhcCC----C
Q 036165 448 LD----HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR----TEHYACMVDLLGRAGRLAEAYEMIKTMST----E 515 (566)
Q Consensus 448 ~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~ 515 (566)
++ ..++..+...+...|++++|...+++..+...-..+ ..++..+...|...|++++|...++++.. .
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 22 226778888888999999999988887654111112 45677888899999999999999887751 1
Q ss_pred CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC
Q 036165 516 PD----LFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550 (566)
Q Consensus 516 p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 550 (566)
++ ..++..+...|.+.|++++|...+++++++.++
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 22 446778889999999999999999999987764
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.1e-13 Score=132.83 Aligned_cols=293 Identities=11% Similarity=-0.041 Sum_probs=185.5
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C----hhhHHHHHHHHHHcCChhHHHHHHHHhhh----CCCCcc
Q 036165 211 GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVE--K-D----IVAMNAMVSGYVQRGLATEALNLVEEIGT----PRVKPN 279 (566)
Q Consensus 211 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~ 279 (566)
......+......+...|++++|...|++..+ + + ...|..+...+...|++++|...+++... .+-.|.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 44556677788999999999999999998833 2 3 35688899999999999999999998754 222222
Q ss_pred -HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCC--------------------hhH
Q 036165 280 -VVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV-EPD----VVSWTSVISGLVHNFC--------------------NDE 333 (566)
Q Consensus 280 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~--------------------~~~ 333 (566)
..++..+...+...|++++|...+++..+... .++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 45778888999999999999999998765310 011 3467777788888888 777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCC-CcHhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 334 AFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE-GDLHVRSALVDMYAKCGFISEARTLFDKMS 412 (566)
Q Consensus 334 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 412 (566)
|...+++..+.. .+.+.. ....++..+...|...|++++|...+++..
T Consensus 166 A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 166 AVDFYEENLSLV-------------------------------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHHHHH-------------------------------HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------------------------------HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 777766654310 000000 012234444555555555555555555443
Q ss_pred C-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHhhhcC--CCC----HHHHHHHHHHHhccCChHHHHHHHHHhH
Q 036165 413 E-----RN----TVTWNSMIFGCANHGYCDEAIELFNQMEERK--KLD----HLSFTAVLTACCHVGLVELGQRLFNMMQ 477 (566)
Q Consensus 413 ~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 477 (566)
+ ++ ..++..+...|...|++++|...+++..+.. .++ ..++..+...+...|++++|...++++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 2 11 2255556666666777777777766665541 111 3456666777777777777777777665
Q ss_pred HhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CC----CHHHHHHHHHHHHhcCCH
Q 036165 478 EKYKIMPR----TEHYACMVDLLGRAGRLAEAYEMIKTMST----EP----DLFVWGALLGACKNHGNI 534 (566)
Q Consensus 478 ~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p----~~~~~~~l~~~~~~~g~~ 534 (566)
+...-..+ ..++..+..+|.+.|++++|...+++... .. ...++..+...+...|+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 43111111 34566677777777777777777776541 11 134455566666666544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.1e-13 Score=131.66 Aligned_cols=269 Identities=9% Similarity=-0.023 Sum_probs=181.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Ch----hhHHHHHHHHHHcCChhHHHHHHHHhhhC----CC-CccHH
Q 036165 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVE--K-DI----VAMNAMVSGYVQRGLATEALNLVEEIGTP----RV-KPNVV 281 (566)
Q Consensus 214 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~ 281 (566)
...+..+...+...|++++|...|++..+ + +. ..|..+...+...|++++|...+++..+. +- .....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34455678889999999999999999843 2 33 46888999999999999999999987642 21 22346
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHc----C-CCCChhhHHHHHHHHHhcCC-----------------hhHHHHHHH
Q 036165 282 TWNTLISGFSKSGDQVMVSKLFQLMRAK----G-VEPDVVSWTSVISGLVHNFC-----------------NDEAFDTFK 339 (566)
Q Consensus 282 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~ 339 (566)
.+..+...+...|++++|...+++..+. + ......++..+...|...|+ +++|+..++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7888899999999999999999987653 1 11124466677777777777 666666665
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCC-CCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----
Q 036165 340 EMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGV-EGDLHVRSALVDMYAKCGFISEARTLFDKMSE----- 413 (566)
Q Consensus 340 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----- 413 (566)
+..+.. . +.+. ......+..+...|...|++++|...+++..+
T Consensus 208 ~al~~~----------------------------~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 208 ENLKLM----------------------------R---DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHH----------------------------H---HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----------------------------H---HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 543210 0 0000 01223455566666666666666666665543
Q ss_pred CC----hhHHHHHHHHHHhcCChHHHHHHHHHhhhcC--CCC----HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCC
Q 036165 414 RN----TVTWNSMIFGCANHGYCDEAIELFNQMEERK--KLD----HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM 483 (566)
Q Consensus 414 ~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 483 (566)
.+ ...+..+...|...|++++|...+++..+.. ..+ ..++..+..++...|++++|...++++.+...-.
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 11 2256667777777788888877777776651 111 3467777778888888888888888776531111
Q ss_pred CC----hhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 484 PR----TEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 484 p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
.+ ...+..+..+|.+.|++++|...++++.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 11 3466777888888888888888887765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-12 Score=126.23 Aligned_cols=228 Identities=9% Similarity=-0.029 Sum_probs=161.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCC------CcHhHHH
Q 036165 321 VISGLVHNFCNDEAFDTFKEMLSQ----GFCP-TSATISSILPACASAANMRRGKEIHGCAIVMGVE------GDLHVRS 389 (566)
Q Consensus 321 li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~ 389 (566)
....+...|++++|...|++..+. +-.+ ...++..+...+...|+++.|...+.+..+.-.. ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 334455566666666666666542 1111 1234556666666666666666666666542111 1234677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHhhhc-----C-CCCHHHHH
Q 036165 390 ALVDMYAKCGFISEARTLFDKMSE-----RN----TVTWNSMIFGCANHGYCDEAIELFNQMEER-----K-KLDHLSFT 454 (566)
Q Consensus 390 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~~~~~ 454 (566)
.+...|...|++++|...|++..+ ++ ..++..+...|...|++++|.+.+++..+. . +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 788888888888888888877663 22 236778889999999999999999998873 2 33455788
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhc---CCCCChhHHHHHHHHHHhcCC---HHHHHHHHHhcCCCCC-HHHHHHHHHH
Q 036165 455 AVLTACCHVGLVELGQRLFNMMQEKY---KIMPRTEHYACMVDLLGRAGR---LAEAYEMIKTMSTEPD-LFVWGALLGA 527 (566)
Q Consensus 455 ~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~ 527 (566)
.+..++...|++++|...+++..+.. +.+.....+..+...|...|+ +++|..++++....|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999887541 111122335678889999999 8999999998864443 4467788899
Q ss_pred HHhcCCHHHHHHHHHHHhhhC
Q 036165 528 CKNHGNIELAEIAAKHLSELE 548 (566)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~ 548 (566)
|...|++++|...++++++..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.49 E-value=6e-12 Score=118.52 Aligned_cols=251 Identities=14% Similarity=0.032 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHH-------hcCCh-------hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036165 297 VMVSKLFQLMRAKGVEPDVVSWTSVISGLV-------HNFCN-------DEAFDTFKEMLSQGFCPTSATISSILPACAS 362 (566)
Q Consensus 297 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 362 (566)
++|..+|+++.+. .+.++..|..++..+. ..|++ ++|..+|++.++.-.+-+...+..++..+..
T Consensus 33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 4566666666554 1335556666655554 34665 7777777777763112344466677777777
Q ss_pred cCchHHHHHHHHHHHHhCCCCcHh-HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHH-hcCChHHHHH
Q 036165 363 AANMRRGKEIHGCAIVMGVEGDLH-VRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCA-NHGYCDEAIE 437 (566)
Q Consensus 363 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~-~~~~~~~A~~ 437 (566)
.|++++|..+|+.+++..+. +.. ++..++..+.+.|++++|..+|++..+ .+...|........ ..|+.++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777777764322 233 778888888888888888888888765 23334443333222 3699999999
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhcC-C
Q 036165 438 LFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP--RTEHYACMVDLLGRAGRLAEAYEMIKTMS-T 514 (566)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 514 (566)
+|++..+..+.+...|..++..+.+.|++++|..+|+++.....++| ....|..++..+.+.|+.++|..+++++. .
T Consensus 191 ~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 191 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999888777888999999999999999999999999987522455 35688888999999999999999998876 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHH
Q 036165 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTD 560 (566)
Q Consensus 515 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 560 (566)
.|+......+ ..+ .-..+++++.|+++..+..||.
T Consensus 271 ~p~~~~~~~~-~~~----------~~r~~~l~~~P~~~~~ln~lgY 305 (308)
T 2ond_A 271 FREEYEGKET-ALL----------VDRYKFMDLYPCSASELKALGY 305 (308)
T ss_dssp TTTTTSSCHH-HHH----------HTTTCBTTBCSSCHHHHHTTTC
T ss_pred cccccccchH-HHH----------HHHHHhcccCCCCHHHHHhcCC
Confidence 3432110000 011 1111556789999998887763
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.7e-13 Score=126.52 Aligned_cols=268 Identities=11% Similarity=-0.027 Sum_probs=183.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C----hhhHHHHHHHHHHcCChhHHHHHHHHhhhC----CCCc-cHHH
Q 036165 215 FVVSSLIDMYSKCGSVEKAKKVFDEMVE--K-D----IVAMNAMVSGYVQRGLATEALNLVEEIGTP----RVKP-NVVT 282 (566)
Q Consensus 215 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~ 282 (566)
..+......+...|++++|...|++..+ + + ...+..+...+...|++++|...+++.... +..| ....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3455667888999999999999999832 2 3 356888999999999999999999987542 2222 2567
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCC--------------------hhHHHHH
Q 036165 283 WNTLISGFSKSGDQVMVSKLFQLMRAKGV-EPD----VVSWTSVISGLVHNFC--------------------NDEAFDT 337 (566)
Q Consensus 283 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~--------------------~~~A~~~ 337 (566)
+..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 78888999999999999999998765311 112 3366777777888888 6666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCC-CcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---
Q 036165 338 FKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVE-GDLHVRSALVDMYAKCGFISEARTLFDKMSE--- 413 (566)
Q Consensus 338 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 413 (566)
+++..+. .. ..+.. .....+..+...|...|++++|...+++..+
T Consensus 166 ~~~a~~~----------------------------~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 166 YEENLSL----------------------------VT---ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHHHH----------------------------HH---HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----------------------------HH---hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 6655321 00 00000 1123455566666666676666666665542
Q ss_pred --CC----hhHHHHHHHHHHhcCChHHHHHHHHHhhhc--CCCC----HHHHHHHHHHHhccCChHHHHHHHHHhHHhcC
Q 036165 414 --RN----TVTWNSMIFGCANHGYCDEAIELFNQMEER--KKLD----HLSFTAVLTACCHVGLVELGQRLFNMMQEKYK 481 (566)
Q Consensus 414 --~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 481 (566)
++ ..++..+...+...|++++|...+++..+. ...+ ..++..+...+...|++++|...++++.+...
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 11 225666777777888888888888877665 1122 34677778888888888888888887765311
Q ss_pred CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 482 IMPR----TEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 482 ~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
-..+ ..++..+..+|.+.|++++|...++++.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 1111 3467778888888999999988888765
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.48 E-value=4.9e-10 Score=115.21 Aligned_cols=134 Identities=6% Similarity=-0.016 Sum_probs=100.2
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCC---hHHHHHHhccCCC-----CCcc
Q 036165 74 FHLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQN---IHHARMLFDEIPK-----TNIH 145 (566)
Q Consensus 74 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-----~~~~ 145 (566)
.|.+...|..+++.+...+.+..++.++++++..- +.....|...+..-.+.|+ ++.+..+|++... +++.
T Consensus 62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 46788899999999999999999999999999874 5677889999999888888 9999999997754 5677
Q ss_pred hHHHHHHHHHhcCCh--------HHHHHHHHHhHH-CCC-CCCc-chHHHHHHHHc---------ccCChhHHHHHHHHH
Q 036165 146 RWIALTGAYARRGYH--------QEAVTVFHEMHI-QGL-KQNI-FVIPSVLKACG---------HLSDIGTGEKIHSLV 205 (566)
Q Consensus 146 ~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~~-~~~~~ll~~~~---------~~~~~~~a~~~~~~~ 205 (566)
.|...+....+.++. +...++|+.... .|. .|+. ..|...+.... ..++.+.+..+|+.+
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 888888777666654 334477777654 365 5543 46666665432 234567889999998
Q ss_pred HHc
Q 036165 206 LKH 208 (566)
Q Consensus 206 ~~~ 208 (566)
+..
T Consensus 221 L~i 223 (679)
T 4e6h_A 221 LCQ 223 (679)
T ss_dssp TTS
T ss_pred HhC
Confidence 863
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.1e-12 Score=114.70 Aligned_cols=208 Identities=10% Similarity=0.002 Sum_probs=160.3
Q ss_pred CCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHH
Q 036165 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--R-NTVTWNSMIF 424 (566)
Q Consensus 348 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~ 424 (566)
.|+..+......+...|++++|...++.+++....++...+..+..++.+.|++++|+..|++..+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456778888888899999999999999998887645666777788899999999999999987764 3 4567888888
Q ss_pred HHHhcCChHHHHHHHHHhhhcCCCCH-------HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC---hhHHHHHHH
Q 036165 425 GCANHGYCDEAIELFNQMEERKKLDH-------LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR---TEHYACMVD 494 (566)
Q Consensus 425 ~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~ 494 (566)
.|...|++++|...+++..+..+.+. ..|..+...+...|++++|++.++++.+ ..|+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHHH
Confidence 89999999999999999888766666 5577888888889999999999998874 3554 466777777
Q ss_pred HHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhc
Q 036165 495 LLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565 (566)
Q Consensus 495 ~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 565 (566)
+|...|+. .++++. ...+...+.... ....+.+++|...++++++++|+++.....++.+....
T Consensus 162 ~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~~ 227 (228)
T 4i17_A 162 LFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAMI 227 (228)
T ss_dssp HHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhh
Confidence 77665543 233332 123344444333 34456789999999999999999999999999887654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.47 E-value=5.5e-12 Score=108.85 Aligned_cols=150 Identities=11% Similarity=0.014 Sum_probs=137.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036165 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVD 494 (566)
Q Consensus 415 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 494 (566)
+...|..+...|...|++++|++.|++..+..|.+..++..+..++...|++++|...+..+... .+.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 56789999999999999999999999999988889999999999999999999999999999875 3445677888889
Q ss_pred HHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 495 LLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 495 ~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
.+...+++++|...+++.. .+.+...+..+...+.+.|++++|++.++++++.+|+++.++..+|.+|..+|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g 155 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKG 155 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCC
Confidence 9999999999999999877 44568889999999999999999999999999999999999999999999876
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.47 E-value=5.7e-12 Score=108.61 Aligned_cols=169 Identities=17% Similarity=0.043 Sum_probs=150.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHh
Q 036165 385 LHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACC 461 (566)
Q Consensus 385 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 461 (566)
...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...++++.+..+.+...+..+...+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45667788889999999999999999886 466788889999999999999999999999887778899999999999
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036165 462 HVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEI 539 (566)
Q Consensus 462 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 539 (566)
..|++++|.+.++++.+. .+.+...+..++.++.+.|++++|.+.++++. .+.+..++..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999876 34567888999999999999999999999887 34567889999999999999999999
Q ss_pred HHHHHhhhCCCCchHH
Q 036165 540 AAKHLSELEPESAANN 555 (566)
Q Consensus 540 ~~~~~~~~~p~~~~~~ 555 (566)
.++++++..|+++...
T Consensus 166 ~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 166 HFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHCCCGGG
T ss_pred HHHHHHHcCCCchhhH
Confidence 9999999999887654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-12 Score=130.14 Aligned_cols=209 Identities=11% Similarity=0.010 Sum_probs=131.4
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCch-HHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHH
Q 036165 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANM-RRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408 (566)
Q Consensus 330 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 408 (566)
..++++..+++.... .+.+...+..+...+...|++ ++|...++++++..+. +...+..+..+|.+.|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345555666654433 234556666666777777777 7777777777666433 4566666677777777777777777
Q ss_pred HhcCC--CChhHHHHHHHHHHhc---------CChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhcc--------CChHHH
Q 036165 409 DKMSE--RNTVTWNSMIFGCANH---------GYCDEAIELFNQMEERKKLDHLSFTAVLTACCHV--------GLVELG 469 (566)
Q Consensus 409 ~~~~~--~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~a 469 (566)
++..+ |+...+..+...+... |++++|++.|++..+..+.+...|..+..++... |++++|
T Consensus 161 ~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 66554 5555666666666666 6666677776666666555666666666666666 666666
Q ss_pred HHHHHHhHHhcCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036165 470 QRLFNMMQEKYKIMP----RTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKH 543 (566)
Q Consensus 470 ~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 543 (566)
+..|+++.+. .| +...|..+..+|.+.|++++|.+.|+++. .+.+...+..+..++...|++++|.+.+.+
T Consensus 241 ~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 241 LSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6666666654 23 45566666666666666666666666655 223455566666666666666666655544
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.1e-12 Score=127.14 Aligned_cols=211 Identities=8% Similarity=-0.072 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHH
Q 036165 296 QVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCN-DEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHG 374 (566)
Q Consensus 296 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 374 (566)
++++...++..... .+.+...+..+..++...|++ ++|+..|++.++.. +.+...+..+..++...|++++|...++
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55666666654443 233666777777778888888 88888888877653 3446677777788888888888888888
Q ss_pred HHHHhCCCCcHhHHHHHHHHHHhc---------CCHHHHHHHHHhcCC---CChhHHHHHHHHHHhc--------CChHH
Q 036165 375 CAIVMGVEGDLHVRSALVDMYAKC---------GFISEARTLFDKMSE---RNTVTWNSMIFGCANH--------GYCDE 434 (566)
Q Consensus 375 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~--------~~~~~ 434 (566)
.+++.. |+...+..+..+|... |++++|+..|++..+ .+...|..+..+|... |++++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 877764 3457777777777777 888888888877653 3566777777777777 77888
Q ss_pred HHHHHHHhhhcCC---CCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 036165 435 AIELFNQMEERKK---LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKT 511 (566)
Q Consensus 435 A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 511 (566)
|++.|++..+..+ .+...|..+..++...|++++|.+.|+++.+. .+.+...+..+..++...|++++|.+.+.+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8888888877655 57777888888888888888888888887765 233455677777777888888888776665
Q ss_pred c
Q 036165 512 M 512 (566)
Q Consensus 512 ~ 512 (566)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.3e-13 Score=127.33 Aligned_cols=243 Identities=12% Similarity=0.073 Sum_probs=135.1
Q ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-------CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 036165 279 NVVTWNTLISGFSKSGDQVMVSKLFQLMRAK-------GVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSA 351 (566)
Q Consensus 279 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 351 (566)
+..++..+...+...|++++|..+++++.+. ........+..+...+...|++++|...+++..+..
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------ 99 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR------ 99 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------
Confidence 3455666666777777777777777666542 122234455666666666666666666666655420
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHhCC-CCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----------CChhHH
Q 036165 352 TISSILPACASAANMRRGKEIHGCAIVMGV-EGDLHVRSALVDMYAKCGFISEARTLFDKMSE-----------RNTVTW 419 (566)
Q Consensus 352 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~ 419 (566)
..... +. ......+..+...|...|++++|...+++..+ .....+
T Consensus 100 ----------------------~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 100 ----------------------EKTLG-KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp ----------------------HHHHC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ----------------------HHHhC-CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 00000 10 11233444455555555555555555544331 112345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhc--------CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhc------CCCCC
Q 036165 420 NSMIFGCANHGYCDEAIELFNQMEER--------KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY------KIMPR 485 (566)
Q Consensus 420 ~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~p~ 485 (566)
..+...+...|++++|.+.++++.+. .+....++..+..++...|++++|...++++.+.. ...+.
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 66666777777777777777776654 11123467777888888888888888888877531 01111
Q ss_pred -hhHH------HHHHHHHHhcCCHHHHHHHHHhcCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC
Q 036165 486 -TEHY------ACMVDLLGRAGRLAEAYEMIKTMST-E-PDLFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550 (566)
Q Consensus 486 -~~~~------~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 550 (566)
...+ ..+...+...+.+.+|...+++... . .+..++..+..+|.+.|++++|...+++++++.|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1122 2223334445555666666666652 2 34567888999999999999999999999998775
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.2e-11 Score=117.50 Aligned_cols=158 Identities=10% Similarity=-0.028 Sum_probs=83.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHHcCChhHHHHHHHHhhhC----CC-C-ccHHHHH
Q 036165 220 LIDMYSKCGSVEKAKKVFDEMVE-----KD----IVAMNAMVSGYVQRGLATEALNLVEEIGTP----RV-K-PNVVTWN 284 (566)
Q Consensus 220 l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~-p~~~~~~ 284 (566)
....+...|++++|...|++... ++ ..++..+...+...|++++|+..+++..+. +- . ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44555666777777777766632 11 235666666666677777766666665431 10 1 1123555
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCC-C----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCCHHHHH
Q 036165 285 TLISGFSKSGDQVMVSKLFQLMRAKGVE-P----DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ----GF-CPTSATIS 354 (566)
Q Consensus 285 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~~~~~~~ 354 (566)
.+...|...|++++|.+.+++..+.... + ...++..+..+|...|++++|+..+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 5666666666666666666665432100 1 1124555556666666666666666655541 11 22233444
Q ss_pred HHHHHHHccCchHHHHHHHHHHH
Q 036165 355 SILPACASAANMRRGKEIHGCAI 377 (566)
Q Consensus 355 ~ll~~~~~~~~~~~a~~~~~~~~ 377 (566)
.+...+...|++++|...+++..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44555555555555555554443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=9.2e-11 Score=113.96 Aligned_cols=162 Identities=9% Similarity=0.067 Sum_probs=117.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHhhh-----cCCCCHH
Q 036165 386 HVRSALVDMYAKCGFISEARTLFDKMSE-----RN----TVTWNSMIFGCANHGYCDEAIELFNQMEE-----RKKLDHL 451 (566)
Q Consensus 386 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~ 451 (566)
.+++.+..+|...|++++|...|++..+ ++ ..++..+..+|...|++++|...+++..+ ..+....
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 4455666666677777777666665543 11 23567778888888888888888888877 3333466
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCC---HHHHHHHHHhcCCCCC-HHHHHHH
Q 036165 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR---TEHYACMVDLLGRAGR---LAEAYEMIKTMSTEPD-LFVWGAL 524 (566)
Q Consensus 452 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l 524 (566)
++..+..++.+.|++++|...+++..+...-..+ ...+..+...|...|+ +++|...+++....|+ ...+..+
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~l 342 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 7888899999999999999999998875222122 2345666777778888 8889999988653333 3456678
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhh
Q 036165 525 LGACKNHGNIELAEIAAKHLSEL 547 (566)
Q Consensus 525 ~~~~~~~g~~~~A~~~~~~~~~~ 547 (566)
...|...|++++|...++++++.
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 88899999999999999999864
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.2e-12 Score=119.65 Aligned_cols=59 Identities=19% Similarity=0.216 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------C---ChhhHHHHHHHHHHcCChhHHHHHHHHhh
Q 036165 214 AFVVSSLIDMYSKCGSVEKAKKVFDEMVE--------K---DIVAMNAMVSGYVQRGLATEALNLVEEIG 272 (566)
Q Consensus 214 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 272 (566)
..++..+...+...|++++|...|+++.+ . ...++..+...+...|++++|...+++..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 96 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL 96 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455555666666666666666555422 1 12234445555555555555555555443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.5e-11 Score=126.34 Aligned_cols=166 Identities=12% Similarity=0.060 Sum_probs=143.0
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 036165 384 DLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTAC 460 (566)
Q Consensus 384 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 460 (566)
+...++.+..+|.+.|++++|+..|++..+ .+..+|..+..+|.+.|++++|++.|++..+..+.+...|..+..++
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 567888999999999999999999998774 45678889999999999999999999999888777888999999999
Q ss_pred hccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHH
Q 036165 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAE 538 (566)
Q Consensus 461 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~ 538 (566)
...|++++|++.|+++.+. -+-+...|..+..+|.+.|++++|.+.|+++. ..| +...|..+..++...|++++|.
T Consensus 88 ~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 9999999999999999875 23356788999999999999999999999887 344 5788899999999999999999
Q ss_pred HHHHHHhhhCCCC
Q 036165 539 IAAKHLSELEPES 551 (566)
Q Consensus 539 ~~~~~~~~~~p~~ 551 (566)
+.+++++++.|+.
T Consensus 166 ~~~~kal~l~~~~ 178 (723)
T 4gyw_A 166 ERMKKLVSIVADQ 178 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhChhH
Confidence 9999999877654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=7.1e-11 Score=110.12 Aligned_cols=176 Identities=8% Similarity=-0.016 Sum_probs=119.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhc-CChHHHHHHHHHhhhcCCC--C----
Q 036165 386 HVRSALVDMYAKCGFISEARTLFDKMSE-----RN----TVTWNSMIFGCANH-GYCDEAIELFNQMEERKKL--D---- 449 (566)
Q Consensus 386 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~--~---- 449 (566)
.+++.+..+|.+.|++++|+..+++..+ .+ ..+++.+...|... |++++|+..|++..+..+. +
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 4555566666666666666666655442 11 34577778888885 8899998888888775221 1
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCC-CCh-----hHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHH---
Q 036165 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM-PRT-----EHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLF--- 519 (566)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~--- 519 (566)
..++..+...+...|++++|+..++++.+. ... +.. ..|..++.++...|++++|...+++.. ..|+..
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKS-SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 346788888899999999999999998875 221 111 156777888889999999999999887 334321
Q ss_pred ---HHHHHHHHHH--hcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHH
Q 036165 520 ---VWGALLGACK--NHGNIELAEIAAKHLSELEPESAANNMLLTDLY 562 (566)
Q Consensus 520 ---~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 562 (566)
.+..++.++. ..+++++|+..|+++.+++|.+......+-..+
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 2444555554 456788999999888888887766665554433
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.34 E-value=5.2e-10 Score=108.42 Aligned_cols=192 Identities=13% Similarity=0.120 Sum_probs=97.6
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHHhCCCC----cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CC-hhHHH----
Q 036165 354 SSILPACASAANMRRGKEIHGCAIVMGVEG----DLHVRSALVDMYAKCGFISEARTLFDKMSE----RN-TVTWN---- 420 (566)
Q Consensus 354 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~---- 420 (566)
..+...+...|++++|...+....+..... ....+..+...+...|++++|...+++... ++ ...+.
T Consensus 139 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 218 (373)
T 1hz4_A 139 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 218 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHH
Confidence 334444455555555555555544432211 123444555566666666666666654431 11 11111
Q ss_pred -HHHHHHHhcCChHHHHHHHHHhhhcCCCC----HHHHHHHHHHHhccCChHHHHHHHHHhHHhc---CCCCCh-hHHHH
Q 036165 421 -SMIFGCANHGYCDEAIELFNQMEERKKLD----HLSFTAVLTACCHVGLVELGQRLFNMMQEKY---KIMPRT-EHYAC 491 (566)
Q Consensus 421 -~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p~~-~~~~~ 491 (566)
..+..+...|++++|...+++.....+.+ ...+..+...+...|++++|...++.+.... +..++. ..+..
T Consensus 219 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 298 (373)
T 1hz4_A 219 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 298 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 12233556677777777766665442111 2245566667777777777777777665431 111122 24556
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC
Q 036165 492 MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550 (566)
Q Consensus 492 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 550 (566)
+..++...|+.++|...+++.... ..-......+...| +....+++.+.+..|-
T Consensus 299 la~~~~~~g~~~~A~~~l~~al~~---~~~~g~~~~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 299 LNQLYWQAGRKSDAQRVLLDALKL---ANRTGFISHFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---HHHHCCCHHHHTTH--HHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH---hccccHHHHHHHcc--HHHHHHHHHHHhCCCC
Confidence 667777888888888877766410 00001112233333 4555566666655553
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.3e-12 Score=105.89 Aligned_cols=143 Identities=9% Similarity=-0.049 Sum_probs=116.3
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 036165 422 MIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGR 501 (566)
Q Consensus 422 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 501 (566)
|...+...|++++|+..+++.....+.+...+..+...|.+.|++++|++.|+++.+. -+-++..|..+..+|.+.|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCc
Confidence 3445556678888888888876654445556778888999999999999999999875 23467889999999999999
Q ss_pred HHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 502 LAEAYEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAEIA-AKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 502 ~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
+++|...|+++. ..| ++.+|..+...|.+.|++++|.+. ++++++++|+++.++...+.++..+|
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 999999999887 334 688899999999999998776655 69999999999999999999999887
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.3e-11 Score=125.44 Aligned_cols=162 Identities=9% Similarity=0.038 Sum_probs=129.0
Q ss_pred CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHH
Q 036165 349 TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFG 425 (566)
Q Consensus 349 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 425 (566)
+...++.+...+...|++++|...++++++..+. +...+..+..+|.+.|++++|+..|++..+ .+...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3456788888888888888888888888887544 567788888888888888888888887764 346678888888
Q ss_pred HHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 036165 426 CANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505 (566)
Q Consensus 426 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 505 (566)
|...|++++|++.|++..+..+.+...|+.+..++...|++++|++.|+++.+. -+-+...+..++.+|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHH
Confidence 888888888888888888877777788888888888888888888888888865 123467788888888888888888
Q ss_pred HHHHHhcC
Q 036165 506 YEMIKTMS 513 (566)
Q Consensus 506 ~~~~~~~~ 513 (566)
.+.++++.
T Consensus 165 ~~~~~kal 172 (723)
T 4gyw_A 165 DERMKKLV 172 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-10 Score=100.16 Aligned_cols=148 Identities=16% Similarity=0.100 Sum_probs=133.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 036165 417 VTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496 (566)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 496 (566)
..+..+...+...|++++|...++++.+..+.+...+..+...+...|++++|...++++.+. .+.+...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 456777888999999999999999998877778889999999999999999999999999876 344678889999999
Q ss_pred HhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 497 GRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 497 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
...|++++|.+.++++. .+.+...+..+...+...|++++|...++++++..|+++..+..++.+|...|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 158 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMG 158 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcC
Confidence 99999999999999887 44678889999999999999999999999999999999999999999998876
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=8.3e-11 Score=105.33 Aligned_cols=148 Identities=14% Similarity=0.061 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCC-CCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036165 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERKK-LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVD 494 (566)
Q Consensus 416 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 494 (566)
+..+......+...|++++|...|++..+..+ ++...+..+..++...|++++|++.++++.+. .+.+...+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHH
Confidence 34444455555555555555555555555533 45555555555555555555555555555542 1223344555555
Q ss_pred HHHhcCCHHHHHHHHHhcC-CCC-CH-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC--CchHHHHHHHHHh
Q 036165 495 LLGRAGRLAEAYEMIKTMS-TEP-DL-------FVWGALLGACKNHGNIELAEIAAKHLSELEPE--SAANNMLLTDLYA 563 (566)
Q Consensus 495 ~~~~~g~~~~A~~~~~~~~-~~p-~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~ 563 (566)
+|.+.|++++|...+++.. ..| +. ..|..+...+...|++++|+..++++++.+|+ ++..+..++.+|.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 5555555555555555554 122 23 33455555555666666666666666666666 5566666665555
Q ss_pred hc
Q 036165 564 NA 565 (566)
Q Consensus 564 ~~ 565 (566)
.+
T Consensus 165 ~~ 166 (228)
T 4i17_A 165 NN 166 (228)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.30 E-value=6.5e-10 Score=107.74 Aligned_cols=260 Identities=10% Similarity=-0.029 Sum_probs=168.6
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHH
Q 036165 289 GFSKSGDQVMVSKLFQLMRAKGVEPDV----VSWTSVISGLVHNFCNDEAFDTFKEMLSQGF-CPT----SATISSILPA 359 (566)
Q Consensus 289 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~ll~~ 359 (566)
.+...|++++|...+++........+. ..++.+...+...|++++|...+++..+... ..+ ..++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 334455555555555555443211111 1334444555666666666666666543210 011 1224455566
Q ss_pred HHccCchHHHHHHHHHHHHh----CCC--C-cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C------ChhHHHHHHH
Q 036165 360 CASAANMRRGKEIHGCAIVM----GVE--G-DLHVRSALVDMYAKCGFISEARTLFDKMSE--R------NTVTWNSMIF 424 (566)
Q Consensus 360 ~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~------~~~~~~~l~~ 424 (566)
+...|++++|...++...+. +.. | ....+..+...+...|++++|...+++..+ + ...++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 66777777777777666542 221 2 345566788899999999999999987653 1 1346777888
Q ss_pred HHHhcCChHHHHHHHHHhhhc-CCCC-HHHHH-----HHHHHHhccCChHHHHHHHHHhHHhcCCCCC---hhHHHHHHH
Q 036165 425 GCANHGYCDEAIELFNQMEER-KKLD-HLSFT-----AVLTACCHVGLVELGQRLFNMMQEKYKIMPR---TEHYACMVD 494 (566)
Q Consensus 425 ~~~~~~~~~~A~~~~~~~~~~-~~~~-~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~ 494 (566)
.+...|++++|...+++.... ..++ ...+. ..+..+...|++++|...+++.... ...+. ...+..+..
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHHHH
Confidence 899999999999999998765 2222 12222 2334477899999999999988753 21111 224667889
Q ss_pred HHHhcCCHHHHHHHHHhcCC----CC---CH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Q 036165 495 LLGRAGRLAEAYEMIKTMST----EP---DL-FVWGALLGACKNHGNIELAEIAAKHLSELEP 549 (566)
Q Consensus 495 ~~~~~g~~~~A~~~~~~~~~----~p---~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 549 (566)
++...|++++|...+++... .+ +. .++..+..++...|+.++|...++++++..+
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 99999999999999988751 11 22 3566677889999999999999999987543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-09 Score=106.15 Aligned_cols=158 Identities=5% Similarity=-0.079 Sum_probs=78.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHHcCChhHHHHHHHHhhhC----C-CCc-cHHHHH
Q 036165 220 LIDMYSKCGSVEKAKKVFDEMVE-----KD----IVAMNAMVSGYVQRGLATEALNLVEEIGTP----R-VKP-NVVTWN 284 (566)
Q Consensus 220 l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-~~p-~~~~~~ 284 (566)
....+...|++++|...|++... ++ ..++..+...+...|++++|+..+++..+. + ..+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34445566666666666665522 11 234555666666666666666666554331 1 011 133455
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHHHH
Q 036165 285 TLISGFSKSGDQVMVSKLFQLMRAK----GVEP-DVVSWTSVISGLVHNFCNDEAFDTFKEMLS-----QGFCPTSATIS 354 (566)
Q Consensus 285 ~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~~ 354 (566)
.+...|...|++++|.+.+++..+. +..+ ...++..+..+|...|++++|+..+++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 5556666666666666666555432 1000 123445555555556666666666555544 21 11133344
Q ss_pred HHHHHHHccCchHHHHHHHHHHHH
Q 036165 355 SILPACASAANMRRGKEIHGCAIV 378 (566)
Q Consensus 355 ~ll~~~~~~~~~~~a~~~~~~~~~ 378 (566)
.+...+...|++++|...+++..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444444444444444444444443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.3e-10 Score=102.98 Aligned_cols=179 Identities=11% Similarity=-0.022 Sum_probs=126.6
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC---HHHHH
Q 036165 384 DLHVRSALVDMYAKCGFISEARTLFDKMSE--RN----TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLD---HLSFT 454 (566)
Q Consensus 384 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~ 454 (566)
+...+..+...+.+.|++++|+..|+++.+ |+ ...+..+..+|.+.|++++|...|+++.+..+.+ ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 445555666677777777777777777664 32 4456667777777777888887777777763322 34566
Q ss_pred HHHHHHhc--------cCChHHHHHHHHHhHHhcCCCCChhHH-----------------HHHHHHHHhcCCHHHHHHHH
Q 036165 455 AVLTACCH--------VGLVELGQRLFNMMQEKYKIMPRTEHY-----------------ACMVDLLGRAGRLAEAYEMI 509 (566)
Q Consensus 455 ~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~~~~~-----------------~~l~~~~~~~g~~~~A~~~~ 509 (566)
.+..++.. .|++++|+..|+++.+.+ +.+.... ..+..+|.+.|++++|...|
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 66667776 778888888888777652 1122223 56688899999999999999
Q ss_pred HhcC-CCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHhhhCCCCc---hHHHHHHHHHhh
Q 036165 510 KTMS-TEPD----LFVWGALLGACKNH----------GNIELAEIAAKHLSELEPESA---ANNMLLTDLYAN 564 (566)
Q Consensus 510 ~~~~-~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~ 564 (566)
+++. ..|+ ...+..+..+|... |++++|+..++++++..|+++ .+...+..++..
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~ 244 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQR 244 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence 9886 2343 45677788888766 899999999999999999996 445556665543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.23 E-value=7.3e-10 Score=89.50 Aligned_cols=132 Identities=19% Similarity=0.188 Sum_probs=114.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 036165 418 TWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLG 497 (566)
Q Consensus 418 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 497 (566)
.|..+...+...|++++|..+++++.+..+.+...+..+...+...|++++|...++++... . +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-C-CCchHHHHHHHHHHH
Confidence 56777888889999999999999998877777888899999999999999999999999875 2 445677888999999
Q ss_pred hcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC
Q 036165 498 RAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPES 551 (566)
Q Consensus 498 ~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 551 (566)
+.|++++|.+.++++. .+.+..++..++..+.+.|++++|...++++++.+|++
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999876 34567888899999999999999999999999998864
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.20 E-value=4.2e-10 Score=104.12 Aligned_cols=164 Identities=15% Similarity=0.129 Sum_probs=99.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----ChhHHHHHHHHHHhcCChHHHHHHHHHhhhc--------
Q 036165 385 LHVRSALVDMYAKCGFISEARTLFDKMSE-------R----NTVTWNSMIFGCANHGYCDEAIELFNQMEER-------- 445 (566)
Q Consensus 385 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------- 445 (566)
..++..+...|...|++++|...+++..+ + ...++..+...|...|++++|...++++.+.
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 34455556666666666666665554432 1 1345666777777778888888777777664
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhc------CCCC-ChhHHHHHHHHHHhcC------CHHHHHHHHHhc
Q 036165 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKY------KIMP-RTEHYACMVDLLGRAG------RLAEAYEMIKTM 512 (566)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g------~~~~A~~~~~~~ 512 (566)
.+....++..+..++...|++++|...++++.+.. ...+ ....+..+...+...+ .+.++...++..
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 12234567888888889999999999888887531 1122 2234444444444333 344455555554
Q ss_pred CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC
Q 036165 513 ST-EP-DLFVWGALLGACKNHGNIELAEIAAKHLSELE 548 (566)
Q Consensus 513 ~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 548 (566)
.. .| ...++..+...|...|++++|...++++++..
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 42 22 35567888899999999999999999998753
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.19 E-value=3.4e-09 Score=96.69 Aligned_cols=182 Identities=11% Similarity=-0.012 Sum_probs=130.5
Q ss_pred HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHHhh
Q 036165 369 GKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSER-----NTVTWNSMIFGCANHGYCDEAIELFNQME 443 (566)
Q Consensus 369 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 443 (566)
+...++...+.+ .++...+..+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555666655544 334455567888888899999999999887432 44567777888999999999999999987
Q ss_pred hcCCC-----CHHHHHHHHHH--Hhc--cCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 036165 444 ERKKL-----DHLSFTAVLTA--CCH--VGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST 514 (566)
Q Consensus 444 ~~~~~-----~~~~~~~l~~~--~~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 514 (566)
+. .| +..+...++.+ ... .+++.+|..+|+++.+. .|+...-..+..++.+.|++++|.+.++.+..
T Consensus 164 ~~-~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA-IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH-SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc-CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 64 44 34555555555 333 34899999999998754 45533334444588999999999999886552
Q ss_pred ------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHH
Q 036165 515 ------------EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNML 557 (566)
Q Consensus 515 ------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 557 (566)
..++.++..++......|+ +|.++++++.+..|++|-....
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 2356666566666666787 8899999999999999876543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-09 Score=96.07 Aligned_cols=138 Identities=9% Similarity=-0.000 Sum_probs=108.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 036165 420 NSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA 499 (566)
Q Consensus 420 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 499 (566)
..+..+|...|++++|+..|++..+..|.+...+..+..++...|++++|+..|+++.+. -+.+...+..+..+|...
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 347888999999999999999999988888999999999999999999999999999976 234577888888888766
Q ss_pred CC--HHHHHHHHHhcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHH
Q 036165 500 GR--LAEAYEMIKTMSTEPDLF--VWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561 (566)
Q Consensus 500 g~--~~~A~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 561 (566)
|. .+.+...+++.. .|++. .+.....++...|++++|+..++++++++|++. ....|..+
T Consensus 136 ~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~-~~~~l~~i 199 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE-AQKTLDKI 199 (208)
T ss_dssp HHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH-HHHHHHHH
Confidence 54 455667777665 44443 445556677788999999999999999999754 44555554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.6e-10 Score=119.34 Aligned_cols=199 Identities=11% Similarity=-0.020 Sum_probs=157.5
Q ss_pred HccCchHHHHHHHHHHH--------HhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhc
Q 036165 361 ASAANMRRGKEIHGCAI--------VMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANH 429 (566)
Q Consensus 361 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 429 (566)
...|++++|.+.++.+. +.. +.+...+..+..+|.+.|++++|+..|++..+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 77899999999999887 433 23567788888999999999999999998875 4667888889999999
Q ss_pred CChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 036165 430 GYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509 (566)
Q Consensus 430 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 509 (566)
|++++|.+.|++..+..+.+...+..+..++...|++++ ++.|+++.+. -+.+...|..+..+|.+.|++++|.+.|
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999998877788899999999999999999 9999999875 2335678889999999999999999999
Q ss_pred HhcC-CCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHhhhCCCCchHHHHHHHHHh
Q 036165 510 KTMS-TEPD-LFVWGALLGACKNHGN-----IELAEIAAKHLSELEPESAANNMLLTDLYA 563 (566)
Q Consensus 510 ~~~~-~~p~-~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 563 (566)
+++. ..|+ ...|..+..++...|+ .++..++.+...+..++++.....-..++.
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l~~~ll~ 618 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQIRALVLG 618 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHHHHHHHH
T ss_pred HhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 9987 4455 5667777777766665 455566666666677788777766665554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.9e-09 Score=85.98 Aligned_cols=110 Identities=9% Similarity=-0.041 Sum_probs=97.8
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHH
Q 036165 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGAC 528 (566)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 528 (566)
..+......+.+.|++++|++.|+++.+. .+.+...|..+..+|.+.|++++|...++++. .+.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 46778888999999999999999999875 34467888999999999999999999999887 445688999999999
Q ss_pred HhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHH
Q 036165 529 KNHGNIELAEIAAKHLSELEPESAANNMLLTDLY 562 (566)
Q Consensus 529 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 562 (566)
...|++++|+..++++++++|+++.++..|++++
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999998865
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2e-09 Score=110.66 Aligned_cols=160 Identities=7% Similarity=-0.043 Sum_probs=114.6
Q ss_pred cCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 036165 398 CGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFN 474 (566)
Q Consensus 398 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 474 (566)
.|++++|...|++..+ .+...|..+...+...|++++|.+.|++..+..+.+...+..+..++...|++++|.+.++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3677777777777664 3466777788888888888888888888888777777888888888888888888888888
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHhhhCC
Q 036165 475 MMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNH---GNIELAEIAAKHLSELEP 549 (566)
Q Consensus 475 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p 549 (566)
++.+. .+.+...+..+..+|.+.|++++|.+.++++. ...+...+..+...+... |+.++|.+.++++++.+|
T Consensus 82 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 82 QASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 88875 23356778888888888888888888888876 334577788888888888 888888888888888888
Q ss_pred CCchHHHHHH
Q 036165 550 ESAANNMLLT 559 (566)
Q Consensus 550 ~~~~~~~~l~ 559 (566)
++...+..++
T Consensus 160 ~~~~~~~~l~ 169 (568)
T 2vsy_A 160 GAVEPFAFLS 169 (568)
T ss_dssp CCSCHHHHTT
T ss_pred cccChHHHhC
Confidence 8776665543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.8e-09 Score=111.48 Aligned_cols=182 Identities=8% Similarity=-0.062 Sum_probs=141.7
Q ss_pred HhcCChhHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh
Q 036165 326 VHNFCNDEAFDTFKEML--------SQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397 (566)
Q Consensus 326 ~~~g~~~~A~~~~~~m~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 397 (566)
...|++++|++.+++.. +. .+.+...+..+..++...|++++|...++.+.+.... +...+..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67888899999998887 32 2445567778888888899999999999988887654 67788888888889
Q ss_pred cCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 036165 398 CGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFN 474 (566)
Q Consensus 398 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 474 (566)
.|++++|+..|++..+ .+...|..+..++.+.|++++ ++.|++..+..+.+...|..+..++...|++++|++.|+
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999988764 356778888888888999988 889998888777788888889999999999999999998
Q ss_pred HhHHhcCCCCC-hhHHHHHHHHHHhcCC--------HHHHHHHHHhcC
Q 036165 475 MMQEKYKIMPR-TEHYACMVDLLGRAGR--------LAEAYEMIKTMS 513 (566)
Q Consensus 475 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~ 513 (566)
++.+ ..|+ ...+..+..++...|+ +++|.+.++.+.
T Consensus 559 ~al~---l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 559 EVPP---TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp TSCT---TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred hhcc---cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 8874 3554 4667777777766544 666666666664
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.10 E-value=7.6e-10 Score=102.35 Aligned_cols=130 Identities=14% Similarity=0.085 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHc------CC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC------CC-C
Q 036165 282 TWNTLISGFSKSGDQVMVSKLFQLMRAK------GV-EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ------GF-C 347 (566)
Q Consensus 282 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~ 347 (566)
++..+...+...|++++|...++++.+. +- .....++..+..+|...|++++|...+++..+. .. +
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3444444444444444444444444322 11 112334444444455555555555555444332 00 1
Q ss_pred CCHHHHHHHHHHHHccCchHHHHHHHHHHHHh------CCCC-cHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036165 348 PTSATISSILPACASAANMRRGKEIHGCAIVM------GVEG-DLHVRSALVDMYAKCGFISEARTLFDKM 411 (566)
Q Consensus 348 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 411 (566)
.....+..+...+...|++++|...++++.+. +..| ...++..+..+|.+.|++++|...+++.
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11223344444444444444444444444332 0011 2334444555555555555555555443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-07 Score=94.05 Aligned_cols=374 Identities=10% Similarity=-0.016 Sum_probs=219.3
Q ss_pred hcC-ChHHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCC-hhHHHHHH
Q 036165 125 ECQ-NIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD-IGTGEKIH 202 (566)
Q Consensus 125 ~~g-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~ 202 (566)
+.| +++.|+.+|+... ..+-. |+++.+..+|++.... .|+...|..-+....+.++ .+....+|
T Consensus 6 ~~~~~i~~aR~vyer~l-----------~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHAR-----------RLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp ------CCHHHHHHHHH-----------HHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHH
T ss_pred HcCcchHHHHHHHHHHH-----------HHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 345 3667777766542 22222 8899999999998874 5688888877777666553 45677788
Q ss_pred HHHHHc-CCC-CchhHHHHHHHHHH----hcCCHHHHHHHHHhcCC-C--Ch-hhHHHHHHHHHHcCChhHHHHHHHHhh
Q 036165 203 SLVLKH-SFG-TDAFVVSSLIDMYS----KCGSVEKAKKVFDEMVE-K--DI-VAMNAMVSGYVQRGLATEALNLVEEIG 272 (566)
Q Consensus 203 ~~~~~~-g~~-~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~-~--~~-~~~~~li~~~~~~g~~~~a~~~~~~m~ 272 (566)
+..+.. |.. .+..+|...+..+. ..|+++.+.++|+.... | +. ..|...... .+......+..++.+..
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~ 150 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDTL 150 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHHh
Confidence 877764 433 35677777776654 24567788888888744 2 11 122222111 11111222222222211
Q ss_pred hCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC--C-----hhHHHHHHHHHHHCC
Q 036165 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF--C-----NDEAFDTFKEMLSQG 345 (566)
Q Consensus 273 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~~ 345 (566)
+.+..|..+++.+...--..+...|...+.--...+ - .+.+..+|++++..
T Consensus 151 ---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~- 208 (493)
T 2uy1_A 151 ---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS- 208 (493)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-
T ss_pred ---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-
Confidence 123334444443332100012334544444322211 1 23466778887764
Q ss_pred CCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHH-HHHHHHhcC----------C-
Q 036165 346 FCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISE-ARTLFDKMS----------E- 413 (566)
Q Consensus 346 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~----------~- 413 (566)
.+.+...+...+.-+...|+.+.|..+++..... +.+...+.. |....+.++ ...+.+... .
T Consensus 209 ~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~ 282 (493)
T 2uy1_A 209 FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFS 282 (493)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcc
Confidence 3455666777777777888888888888888887 223333322 222111111 112222111 0
Q ss_pred -CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc-cCChHHHHHHHHHhHHhcCCCCChhHHHH
Q 036165 414 -RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCH-VGLVELGQRLFNMMQEKYKIMPRTEHYAC 491 (566)
Q Consensus 414 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 491 (566)
.....|...+....+.++.+.|..+|++. ...+.+...|...+..-.. .++.+.|..+|+...+.++ -++..+..
T Consensus 283 ~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~ 359 (493)
T 2uy1_A 283 KELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEE 359 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHH
Confidence 11245666677776788899999999999 3322344555433332222 3369999999999998743 34556777
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036165 492 MVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSE 546 (566)
Q Consensus 492 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (566)
.++...+.|+.+.|..+|+++. .....|...+.--...|+.+.+..+++++.+
T Consensus 360 yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 360 FFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888889999999999999984 3578899999888899999999999999885
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-08 Score=94.71 Aligned_cols=201 Identities=12% Similarity=-0.009 Sum_probs=148.0
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCchHHH
Q 036165 295 DQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQ----GFCPT-SATISSILPACASAANMRRG 369 (566)
Q Consensus 295 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a 369 (566)
++++|...++.. ...|...|++++|...|++..+. |-+++ ..++..+..++...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777665 34577788888888888877643 32222 45678888888888999999
Q ss_pred HHHHHHHHHhCCC---C--cHhHHHHHHHHHHhc-CCHHHHHHHHHhcCC--C---C----hhHHHHHHHHHHhcCChHH
Q 036165 370 KEIHGCAIVMGVE---G--DLHVRSALVDMYAKC-GFISEARTLFDKMSE--R---N----TVTWNSMIFGCANHGYCDE 434 (566)
Q Consensus 370 ~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~--~---~----~~~~~~l~~~~~~~~~~~~ 434 (566)
...+++.++.... + ...+++.+..+|... |++++|+..|++..+ | + ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 8888887664211 1 145778889999996 999999999988764 1 1 3468888999999999999
Q ss_pred HHHHHHHhhhcCCCCH-------HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChh------HHHHHHHHHH--hc
Q 036165 435 AIELFNQMEERKKLDH-------LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTE------HYACMVDLLG--RA 499 (566)
Q Consensus 435 A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~------~~~~l~~~~~--~~ 499 (566)
|+..|++..+..+.+. ..|..+..++...|++++|...+++..+ +.|+.. .+..++.+|. ..
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCH
Confidence 9999999998732221 1577888899999999999999999874 344421 3445566664 45
Q ss_pred CCHHHHHHHHHhcC
Q 036165 500 GRLAEAYEMIKTMS 513 (566)
Q Consensus 500 g~~~~A~~~~~~~~ 513 (566)
+++++|...|+++.
T Consensus 254 ~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 254 EQLSEHCKEFDNFM 267 (292)
T ss_dssp TTHHHHHHHHTTSS
T ss_pred HHHHHHHHHhccCC
Confidence 78999999998886
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-07 Score=87.50 Aligned_cols=229 Identities=6% Similarity=-0.011 Sum_probs=175.2
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--chHHHHHHHHHHHHhCCCCcHhHHHHHHHHH----Hhc---CCH
Q 036165 331 NDEAFDTFKEMLSQGFCPTSATISSILPACASAA--NMRRGKEIHGCAIVMGVEGDLHVRSALVDMY----AKC---GFI 401 (566)
Q Consensus 331 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~~ 401 (566)
.++|+..++.++... +-+...++.--.++...+ +++++...++.++...++ +..+++.-...+ ... +++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCH
Confidence 356777777776642 223334555555666666 777777777777776554 444454433333 444 788
Q ss_pred HHHHHHHHhcCC---CChhHHHHHHHHHHhcCChH--HHHHHHHHhhhcCCCCHHHHHHHHHHHhccCC------hHHHH
Q 036165 402 SEARTLFDKMSE---RNTVTWNSMIFGCANHGYCD--EAIELFNQMEERKKLDHLSFTAVLTACCHVGL------VELGQ 470 (566)
Q Consensus 402 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~a~ 470 (566)
+++..+++++.+ .|..+|+.-.-.+.+.|.++ ++++.++++.+..+-|...|+.-...+...|. +++++
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 999999988875 57778888777888888888 99999999999888899999988888888877 89999
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH-HHHHHHhcCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036165 471 RLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAE-AYEMIKTMST-----EPDLFVWGALLGACKNHGNIELAEIAAKHL 544 (566)
Q Consensus 471 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 544 (566)
+.++.++.. .+-|...|+.+...+.+.|+..+ +..+.+++.. ..++..+..++.+|.+.|+.++|.++++.+
T Consensus 207 ~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 207 NYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 999999875 34578889999999999888544 5667777652 347888999999999999999999999999
Q ss_pred hh-hCCCCchHHHHHHHHHh
Q 036165 545 SE-LEPESAANNMLLTDLYA 563 (566)
Q Consensus 545 ~~-~~p~~~~~~~~l~~~~~ 563 (566)
.+ .+|....++...++.+.
T Consensus 285 ~~~~Dpir~~yW~~~~~~l~ 304 (306)
T 3dra_A 285 KSKYNPIRSNFWDYQISKLT 304 (306)
T ss_dssp HHTTCGGGHHHHHHHHHTCC
T ss_pred HhccChHHHHHHHHHHhhcc
Confidence 96 89999998888776543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.05 E-value=1.9e-08 Score=91.84 Aligned_cols=160 Identities=11% Similarity=-0.004 Sum_probs=124.9
Q ss_pred HHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCC--CCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 036165 404 ARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKK--LDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478 (566)
Q Consensus 404 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 478 (566)
|+..|++..+ ++..++..+..++...|++++|++++.+.....+ .+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6777776653 4556667788899999999999999999877643 5667889999999999999999999999986
Q ss_pred hcCCCC-----ChhHHHHHHHH--HHhcC--CHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-
Q 036165 479 KYKIMP-----RTEHYACMVDL--LGRAG--RLAEAYEMIKTMSTE-PDLFVWGALLGACKNHGNIELAEIAAKHLSEL- 547 (566)
Q Consensus 479 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 547 (566)
. .| +..+...|+.+ ....| ++++|..+|+++..+ |+..+-..++.++.+.|++++|+..++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 5 56 24555556555 44444 999999999998744 65444455555899999999999999988876
Q ss_pred ---------CCCCchHHHHHHHHHhhcC
Q 036165 548 ---------EPESAANNMLLTDLYANAG 566 (566)
Q Consensus 548 ---------~p~~~~~~~~l~~~~~~~g 566 (566)
+|+++.++.+++.+....|
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lg 269 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQG 269 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhC
Confidence 4889999978766665443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=4.5e-09 Score=97.47 Aligned_cols=161 Identities=7% Similarity=-0.088 Sum_probs=94.4
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHH
Q 036165 383 GDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTA 459 (566)
Q Consensus 383 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 459 (566)
.+...+..+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|...++++....+.+..........
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 3445555666666666777777766666553 2445566666666666777777666666655433222222222233
Q ss_pred HhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC---HHHHHHHHHHHHhcCCHH
Q 036165 460 CCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPD---LFVWGALLGACKNHGNIE 535 (566)
Q Consensus 460 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~~g~~~ 535 (566)
+...++.++|...+++.... .+.+...+..+..+|...|++++|.+.++++. ..|+ ...+..++..+...|+.+
T Consensus 195 l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 45556666666666666654 23345566666666666666666666666665 2232 445666666666666666
Q ss_pred HHHHHHHHHh
Q 036165 536 LAEIAAKHLS 545 (566)
Q Consensus 536 ~A~~~~~~~~ 545 (566)
+|...+++.+
T Consensus 273 ~a~~~~r~al 282 (287)
T 3qou_A 273 ALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 6666666654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-08 Score=91.15 Aligned_cols=186 Identities=12% Similarity=0.017 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCC--cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChh----HHHH
Q 036165 350 SATISSILPACASAANMRRGKEIHGCAIVMGVEG--DLHVRSALVDMYAKCGFISEARTLFDKMSE--RNTV----TWNS 421 (566)
Q Consensus 350 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~ 421 (566)
...+..+...+...|++++|...++.+++..+.. ....+..+..+|.+.|++++|+..|+++.+ |+.. .+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3445555666777777777777777777654332 134566677777777777777777776653 3221 3333
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh-hH------------
Q 036165 422 MIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT-EH------------ 488 (566)
Q Consensus 422 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~------------ 488 (566)
+..++...+.. .+ ..|..+.......|++++|...|+++.+. .|+. ..
T Consensus 84 ~g~~~~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL-----------QGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVFLKD 144 (225)
T ss_dssp HHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhh-----hh-----------hhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHHHHH
Confidence 44444331100 00 00111111122344455555555555432 1221 11
Q ss_pred -----HHHHHHHHHhcCCHHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchH
Q 036165 489 -----YACMVDLLGRAGRLAEAYEMIKTMS-TEPD----LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAAN 554 (566)
Q Consensus 489 -----~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 554 (566)
...+...|.+.|++++|...|+++. ..|+ ...+..+..++.+.|+.++|...++.+....|++...
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 1346678899999999999999987 3344 2568888899999999999999999999999987653
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.03 E-value=8.4e-09 Score=94.31 Aligned_cols=152 Identities=14% Similarity=0.043 Sum_probs=125.3
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC---HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-hhHH
Q 036165 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLD---HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR-TEHY 489 (566)
Q Consensus 414 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~ 489 (566)
.+...+..+...+.+.|++++|...|+++.+..+.+ ...+..+..++...|++++|+..|+++.+.+.-.|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 456677778889999999999999999999886555 678899999999999999999999999986322222 4567
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHhcC-CCCC-HHHH-----------------HHHHHHHHhcCCHHHHHHHHH
Q 036165 490 ACMVDLLGR--------AGRLAEAYEMIKTMS-TEPD-LFVW-----------------GALLGACKNHGNIELAEIAAK 542 (566)
Q Consensus 490 ~~l~~~~~~--------~g~~~~A~~~~~~~~-~~p~-~~~~-----------------~~l~~~~~~~g~~~~A~~~~~ 542 (566)
..+..++.+ .|++++|...|+++. ..|+ ...+ ..+...|.+.|++++|+..++
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 172 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE 172 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 788889998 999999999999987 2343 3333 556788999999999999999
Q ss_pred HHhhhCCCC---chHHHHHHHHHhhc
Q 036165 543 HLSELEPES---AANNMLLTDLYANA 565 (566)
Q Consensus 543 ~~~~~~p~~---~~~~~~l~~~~~~~ 565 (566)
++++..|++ +..+..++.+|...
T Consensus 173 ~~l~~~p~~~~~~~a~~~l~~~~~~~ 198 (261)
T 3qky_A 173 AVFDAYPDTPWADDALVGAMRAYIAY 198 (261)
T ss_dssp HHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCchHHHHHHHHHHHHHHh
Confidence 999999984 55888999888754
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.6e-08 Score=88.72 Aligned_cols=187 Identities=9% Similarity=-0.031 Sum_probs=125.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHH
Q 036165 317 SWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYA 396 (566)
Q Consensus 317 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 396 (566)
.+......+...|++++|+..|++.++. .|+........ .... ...........+..+|.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~----~~~~--------------~~~~~~~~~~~lg~~~~ 65 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT----NVDK--------------NSEISSKLATELALAYK 65 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH----HSCT--------------TSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh----hhcc--------------hhhhhHHHHHHHHHHHH
Confidence 3344455667778888888888877664 33322111000 0000 00012233344888899
Q ss_pred hcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCC--hHHHHH
Q 036165 397 KCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGL--VELGQR 471 (566)
Q Consensus 397 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~ 471 (566)
+.|++++|+..|++..+ .+...|..+..++...|++++|...|++..+..|.+..++..+..++...|+ .+.+..
T Consensus 66 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~ 145 (208)
T 3urz_A 66 KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLET 145 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999998774 4677888999999999999999999999999888888899999988876654 344455
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHH
Q 036165 472 LFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLFVWGALLG 526 (566)
Q Consensus 472 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~ 526 (566)
.++... ...|....+.....++...|++++|...|+++. ..|+......+..
T Consensus 146 ~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 146 DYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 555543 223333344556677778899999999999987 5688765555443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1.4e-08 Score=80.56 Aligned_cols=115 Identities=17% Similarity=0.130 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHH
Q 036165 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGA 527 (566)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~ 527 (566)
...+..+...+...|++++|.+.++++.+. .+.+...+..++.++.+.|++++|...++++. .+.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 456778888888899999999999988875 23456778888899999999999999998876 34567888999999
Q ss_pred HHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 528 CKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
+...|++++|...++++++..|+++..+..++.++..+|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999998876
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.99 E-value=4.6e-07 Score=90.40 Aligned_cols=122 Identities=13% Similarity=0.098 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--hhHHHHHHHHHHh-cCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc
Q 036165 386 HVRSALVDMYAKCGFISEARTLFDKMSERN--TVTWNSMIFGCAN-HGYCDEAIELFNQMEERKKLDHLSFTAVLTACCH 462 (566)
Q Consensus 386 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 462 (566)
.+|...+..+.+.++.+.|..+|++...|. ...|......-.. .++.+.|..+|+...+..+.++..+...+....+
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~ 366 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLR 366 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 456677777777888999999999884333 2333322222222 3369999999999988765556666777777788
Q ss_pred cCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 463 VGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 463 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
.|+.+.|..+|+++. .....|...++.-.+.|+.+.+.++++++.
T Consensus 367 ~~~~~~aR~l~er~~------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 367 IGDEENARALFKRLE------KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HTCHHHHHHHHHHSC------CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 899999999998872 256778888887778899999988887765
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.5e-08 Score=86.29 Aligned_cols=156 Identities=10% Similarity=-0.049 Sum_probs=110.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHH-Hhcc
Q 036165 388 RSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTA-CCHV 463 (566)
Q Consensus 388 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 463 (566)
.......+.+.|++++|...|++..+ .+...+..+...+...|++++|...++++.+..+ +...+..+... +...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhh
Confidence 44566677788888888888888775 4566777788888888888888888888776544 55443332222 1222
Q ss_pred CChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC---HHHHHHHHHHHHhcCCHHHHHH
Q 036165 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPD---LFVWGALLGACKNHGNIELAEI 539 (566)
Q Consensus 464 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~~g~~~~A~~ 539 (566)
+...+|+..++++.+. .+.+...+..+..++...|++++|...++++. ..|+ ...+..+...+...|+.++|..
T Consensus 88 ~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 88 AAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred cccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 2334567788887764 23346778888888888888888888888876 3443 4578888888888888888888
Q ss_pred HHHHHhh
Q 036165 540 AAKHLSE 546 (566)
Q Consensus 540 ~~~~~~~ 546 (566)
.|++++.
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=3.4e-08 Score=91.52 Aligned_cols=165 Identities=9% Similarity=-0.025 Sum_probs=132.4
Q ss_pred CCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHH-H
Q 036165 347 CPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--RNTVTWNSM-I 423 (566)
Q Consensus 347 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l-~ 423 (566)
+.+...+..+...+...|+++.|...++.+.+..+. +...+..+..+|.+.|++++|...++++.. |+....... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 344455666777777888888888888888776654 677888899999999999999999999885 654433332 2
Q ss_pred HHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH
Q 036165 424 FGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLA 503 (566)
Q Consensus 424 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 503 (566)
..+...++.++|...+++.....+.+...+..+..++...|++++|...+.++.....-..+...+..++..|...|+.+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 34667788889999999999888889999999999999999999999999999986111122568899999999999999
Q ss_pred HHHHHHHhc
Q 036165 504 EAYEMIKTM 512 (566)
Q Consensus 504 ~A~~~~~~~ 512 (566)
+|...+++.
T Consensus 273 ~a~~~~r~a 281 (287)
T 3qou_A 273 ALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 999888764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.96 E-value=1.8e-08 Score=81.09 Aligned_cols=124 Identities=20% Similarity=0.185 Sum_probs=81.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccC
Q 036165 388 RSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVG 464 (566)
Q Consensus 388 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 464 (566)
+..+...+...|++++|..+++++.+ .+...+..+...+...|++++|...++++.+..+.+...+..+...+...|
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 44455566666666666666665542 344556666666667777777777777776665556666777777777777
Q ss_pred ChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 465 LVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 465 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
++++|.+.++++.+. .+.+...+..++.++.+.|++++|...++++.
T Consensus 84 ~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 84 DYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 777777777777654 23345666677777777777777777776654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.3e-08 Score=81.81 Aligned_cols=117 Identities=7% Similarity=-0.080 Sum_probs=99.6
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHH
Q 036165 448 LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALL 525 (566)
Q Consensus 448 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~ 525 (566)
.+...+..+...+...|++++|...++++.+. .+.+...+..+..+|...|++++|...++++. .+.+...|..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 34557888888888899999999999888754 23367788888888999999999999998876 345678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 526 GACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
.++.+.|++++|...++++++.+|++...+..++.++..+|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998765
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.95 E-value=8e-09 Score=96.93 Aligned_cols=95 Identities=8% Similarity=-0.060 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCC--CC----HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----hh
Q 036165 418 TWNSMIFGCANHGYCDEAIELFNQMEERKK--LD----HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR----TE 487 (566)
Q Consensus 418 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 487 (566)
++..+...|.. |++++|+..|++..+..+ .+ ..++..+..++...|++++|+..++++.+...-.++ ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 44455555555 666666666666554411 11 235566666666666666666666666543110111 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 488 HYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 488 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
.+..++.++...|++++|...|++..
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44455556666667777766666654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=5.1e-09 Score=86.22 Aligned_cols=122 Identities=11% Similarity=-0.045 Sum_probs=93.1
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC
Q 036165 438 LFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TE 515 (566)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~ 515 (566)
.|+++....+.+...+..+...+...|++++|+..|+++... -+.+...|..+..+|.+.|++++|...|+++. .+
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 344444444445566777888888888999999888888865 23467778888888888999999998888876 33
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHH
Q 036165 516 PDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561 (566)
Q Consensus 516 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 561 (566)
.++..|..+..+|...|++++|...+++++++.|+++........+
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 132 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRV 132 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHH
Confidence 4677888888889999999999999999999888887765544433
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=5.6e-09 Score=86.25 Aligned_cols=141 Identities=8% Similarity=-0.079 Sum_probs=92.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChH
Q 036165 391 LVDMYAKCGFISEARTLFDKMSER---NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVE 467 (566)
Q Consensus 391 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 467 (566)
|..++...|++++|+..++..... +...+..+...|.+.|++++|++.|++..+..+.+..+|..+..++...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 344555667777777777766652 23455567777777888888888888777776677777888888888888888
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHH-HHhcC-CCC-CHHHHHHHHHHHHhcCC
Q 036165 468 LGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM-IKTMS-TEP-DLFVWGALLGACKNHGN 533 (566)
Q Consensus 468 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~-~~p-~~~~~~~l~~~~~~~g~ 533 (566)
+|+..|+++.+. .+-++..+..+..+|.+.|++++|.+. ++++. ..| ++.+|......+...|+
T Consensus 83 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888777764 123456777777777777777665544 46554 233 45566655566655553
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.94 E-value=8.4e-08 Score=84.39 Aligned_cols=184 Identities=10% Similarity=-0.099 Sum_probs=132.6
Q ss_pred HHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CChhHHHHHHHHHHhcC----ChHHHHHHHHHhh
Q 036165 369 GKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE-RNTVTWNSMIFGCANHG----YCDEAIELFNQME 443 (566)
Q Consensus 369 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~ 443 (566)
|...+.+..+.| ++..+..+...|...+++++|+..|++..+ .+...+..|...|.. + ++++|.++|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444555555543 556666677777777888888888877664 456667777777766 5 7888888888886
Q ss_pred hcCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHhHHhcCCC-CChhHHHHHHHHHHh----cCCHHHHHHHHHhcCC
Q 036165 444 ERKKLDHLSFTAVLTACCH----VGLVELGQRLFNMMQEKYKIM-PRTEHYACMVDLLGR----AGRLAEAYEMIKTMST 514 (566)
Q Consensus 444 ~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 514 (566)
+. .+...+..|...+.. .+++++|.+.|++..+. +.. ..+..+..|..+|.. .+++++|..+|++...
T Consensus 81 ~~--g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 81 EA--GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HT--TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HC--CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 53 456677788888877 78899999999988754 321 026778888888888 7889999999998864
Q ss_pred C-CCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHhhhCCCCchHHHHHHHH
Q 036165 515 E-PDLFVWGALLGACKNH-G-----NIELAEIAAKHLSELEPESAANNMLLTDL 561 (566)
Q Consensus 515 ~-p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 561 (566)
. ++...+..|...|... | +.++|...++++.+.+ ++.....|..+
T Consensus 158 ~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l~~l 209 (212)
T 3rjv_A 158 LSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFDRI 209 (212)
T ss_dssp TSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHh
Confidence 3 5667788888887654 3 8999999999999886 44555555443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.94 E-value=7e-09 Score=88.39 Aligned_cols=146 Identities=11% Similarity=0.069 Sum_probs=117.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHH-H
Q 036165 418 TWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDL-L 496 (566)
Q Consensus 418 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~ 496 (566)
.+..+...+...|++++|...|++..+..+.+...+..+..++...|++++|+..++++... .|++..+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence 45566778889999999999999999887888899999999999999999999999998765 3344433333222 2
Q ss_pred HhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC--chHHHHHHHHHhhcC
Q 036165 497 GRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAEIAAKHLSELEPES--AANNMLLTDLYANAG 566 (566)
Q Consensus 497 ~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g 566 (566)
.+.+...+|...+++.. ..| +...+..+..++...|++++|+..++++++.+|+. +..+..++.+|..+|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence 23233445788888876 334 68899999999999999999999999999999875 569999999998766
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.92 E-value=7.7e-08 Score=90.15 Aligned_cols=200 Identities=10% Similarity=-0.002 Sum_probs=147.1
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 036165 327 HNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEART 406 (566)
Q Consensus 327 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 406 (566)
..|++++|.+++++..+.. +.. .+...++++.|...+..+ ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 3577888888888776531 111 011146677766665553 556778889988888
Q ss_pred HHHhcCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHhhhc--CCCC----HHHHHHHHHHHhccCChHHHHH
Q 036165 407 LFDKMSE-----RN----TVTWNSMIFGCANHGYCDEAIELFNQMEER--KKLD----HLSFTAVLTACCHVGLVELGQR 471 (566)
Q Consensus 407 ~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~a~~ 471 (566)
.|.+..+ .+ ..+|+.+...|...|++++|+..|++..+. ...+ ..++..+..++.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8876653 12 347888889999999999999999998765 2222 2468888889988 99999999
Q ss_pred HHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCC----HHHHHHHHHHHHhcCCHHHHHH
Q 036165 472 LFNMMQEKYKIMPR----TEHYACMVDLLGRAGRLAEAYEMIKTMST----EPD----LFVWGALLGACKNHGNIELAEI 539 (566)
Q Consensus 472 ~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p~----~~~~~~l~~~~~~~g~~~~A~~ 539 (566)
.+++..+.+.-..+ ..++..+..+|.+.|++++|...++++.. .++ ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99998764211111 46788899999999999999999998871 122 2356677777888899999999
Q ss_pred HHHHHhhhCCCCch
Q 036165 540 AAKHLSELEPESAA 553 (566)
Q Consensus 540 ~~~~~~~~~p~~~~ 553 (566)
.+++++ ..|+...
T Consensus 217 ~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 217 CVRESY-SIPGFSG 229 (307)
T ss_dssp HHHHHT-TSTTSTT
T ss_pred HHHHHh-CCCCCCC
Confidence 999999 9997654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.92 E-value=6.4e-08 Score=85.23 Aligned_cols=124 Identities=10% Similarity=-0.049 Sum_probs=97.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChH
Q 036165 388 RSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVE 467 (566)
Q Consensus 388 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 467 (566)
+..+...+...|++++|...|++...++...|..+...|...|++++|...|++..+..+.+...+..+..++...|+++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHH
Confidence 44567777888899999999988888888888888888888899999999998888877777888888888888889999
Q ss_pred HHHHHHHHhHHhcCCCCCh----------------hHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 468 LGQRLFNMMQEKYKIMPRT----------------EHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 468 ~a~~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
+|.+.++++.+. .+.+. ..+..+..+|.+.|++++|...++++.
T Consensus 89 ~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 89 LAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999888888864 11122 556666777777777777777777665
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.9e-08 Score=85.76 Aligned_cols=133 Identities=10% Similarity=0.038 Sum_probs=108.1
Q ss_pred HhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHH-HHhcCCH--H
Q 036165 427 ANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDL-LGRAGRL--A 503 (566)
Q Consensus 427 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~ 503 (566)
...|++++|...+++..+..+.+...+..+..++...|++++|...++++.+. .+.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcchH
Confidence 35678888999999988877778889999999999999999999999998875 23466778888888 7788998 9
Q ss_pred HHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHH
Q 036165 504 EAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561 (566)
Q Consensus 504 ~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 561 (566)
+|...++++. .+.+...+..+...+...|++++|...++++++..|+++.....+..+
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i 158 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESI 158 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 9999999887 334578888899999999999999999999999999988776655544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.90 E-value=7.7e-08 Score=85.60 Aligned_cols=187 Identities=9% Similarity=-0.065 Sum_probs=119.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcH--hHHH
Q 036165 314 DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC-P-TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL--HVRS 389 (566)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 389 (566)
+...+..+...+...|++++|+..|+++++.... | ....+..+..++...|++++|...++.+++..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455666778899999999999999999875321 2 1356788889999999999999999999987654221 2444
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHH----------------
Q 036165 390 ALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSF---------------- 453 (566)
Q Consensus 390 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---------------- 453 (566)
.+..++.+.|.. .+ ..|..+...+...|+.++|...|+++.+..|.+...+
T Consensus 83 ~~g~~~~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~ 149 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL--------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY 149 (225)
T ss_dssp HHHHHHHHHHC---------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh--------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence 455555442210 00 0111222223334455555555555554433222221
Q ss_pred -HHHHHHHhccCChHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 454 -TAVLTACCHVGLVELGQRLFNMMQEKYKIMP-RTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 454 -~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
..+...+.+.|++++|+..|+++.+.+.-.| ....+..++.+|.+.|++++|.+.++.+.
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3456677888999999999999887621111 12567788899999999999999988766
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=5.2e-08 Score=77.87 Aligned_cols=116 Identities=12% Similarity=-0.006 Sum_probs=96.9
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHH
Q 036165 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLG 526 (566)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~ 526 (566)
+...+..+...+...|++++|...++++... .+.+...+..+..++...|++++|...+++.. .+.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 3456777788888888999999988888875 23456778888888889999999999888876 3345778888899
Q ss_pred HHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 527 ACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 527 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
.+...|++++|...++++++..|+++..+..++.++...|
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988765
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-07 Score=83.23 Aligned_cols=134 Identities=9% Similarity=-0.042 Sum_probs=114.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 036165 418 TWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLG 497 (566)
Q Consensus 418 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 497 (566)
.+..+...+...|++++|...|++.. .|+...+..+..++...|++++|+..++++.+. .+.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHH
Confidence 45566778889999999999999874 568889999999999999999999999999976 2446788999999999
Q ss_pred hcCCHHHHHHHHHhcC-CCC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHH
Q 036165 498 RAGRLAEAYEMIKTMS-TEP-D----------------LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNM 556 (566)
Q Consensus 498 ~~g~~~~A~~~~~~~~-~~p-~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 556 (566)
+.|++++|...++++. ..| + ...+..+..++.+.|++++|...++++++..|++.....
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 159 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKI 159 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHH
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchH
Confidence 9999999999999886 222 2 378889999999999999999999999999997754433
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.6e-08 Score=102.29 Aligned_cols=135 Identities=16% Similarity=0.029 Sum_probs=105.8
Q ss_pred cCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 036165 429 HGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEM 508 (566)
Q Consensus 429 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 508 (566)
.|++++|.+.+++..+..+.+...+..+...+...|++++|.+.+++..+. .+.+...+..+..+|.+.|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999998877778899999999999999999999999999864 234578899999999999999999999
Q ss_pred HHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhc
Q 036165 509 IKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565 (566)
Q Consensus 509 ~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 565 (566)
+++.. .+.+...|..+..++.+.|++++|.+.++++++.+|+++..+..++.+|..+
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL 138 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 99987 3456889999999999999999999999999999999999999999999876
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-08 Score=84.15 Aligned_cols=102 Identities=6% Similarity=-0.095 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHH
Q 036165 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLG 526 (566)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~ 526 (566)
+...+..+...+...|++++|+..|+++... -+.++..|..+..+|.+.|++++|...|+++. .+.++..|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 3445666666777777777777777777754 23346667777777777777777777777765 2335667777777
Q ss_pred HHHhcCCHHHHHHHHHHHhhhCCCCc
Q 036165 527 ACKNHGNIELAEIAAKHLSELEPESA 552 (566)
Q Consensus 527 ~~~~~g~~~~A~~~~~~~~~~~p~~~ 552 (566)
+|.+.|++++|+..|++++++.|+++
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 77777777777777777777777654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.85 E-value=2e-08 Score=82.08 Aligned_cols=122 Identities=10% Similarity=-0.047 Sum_probs=90.3
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCC
Q 036165 439 FNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEP 516 (566)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p 516 (566)
|+++.+..+.+...+..+...+...|++++|+..|+++... .+.+...|..+..+|.+.|++++|...++++. .+.
T Consensus 7 l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp --CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 33333333334456667777888888888888888888765 23466778888888888888888888888876 344
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHH
Q 036165 517 DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLY 562 (566)
Q Consensus 517 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 562 (566)
++..|..+..++...|++++|...++++++..|+++........+.
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 130 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAG 130 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 5677888888888999999999999999988888887766655543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.84 E-value=5.1e-07 Score=79.33 Aligned_cols=170 Identities=11% Similarity=-0.028 Sum_probs=105.9
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----chHHHHHHHH
Q 036165 299 VSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA----NMRRGKEIHG 374 (566)
Q Consensus 299 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~ 374 (566)
|.+.|++..+.| ++..+..+...|...+++++|+..|++..+.| +...+..+...+.. + ++++|...++
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444555554442 45555566666666666666666666666544 33444445555555 4 6666666666
Q ss_pred HHHHhCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHhcCCCC-----hhHHHHHHHHHHh----cCChHHHHHHHHH
Q 036165 375 CAIVMGVEGDLHVRSALVDMYAK----CGFISEARTLFDKMSERN-----TVTWNSMIFGCAN----HGYCDEAIELFNQ 441 (566)
Q Consensus 375 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~----~~~~~~A~~~~~~ 441 (566)
+..+.| ++..+..|..+|.. .+++++|...|++..+.+ ...+..|...|.. .+++++|..+|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 665544 44555666666665 677777777777776522 4667777777776 6677777777777
Q ss_pred hhhcCCCCHHHHHHHHHHHhcc-C-----ChHHHHHHHHHhHHh
Q 036165 442 MEERKKLDHLSFTAVLTACCHV-G-----LVELGQRLFNMMQEK 479 (566)
Q Consensus 442 ~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~ 479 (566)
..+. +.+...+..|...|... | ++++|...+++..+.
T Consensus 155 A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 155 SSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 7665 34445666666666532 2 677777777777766
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.81 E-value=7.2e-08 Score=76.78 Aligned_cols=113 Identities=7% Similarity=-0.108 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHH
Q 036165 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGA 527 (566)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~ 527 (566)
...+..+...+...|++++|+..|++..+. .+.+...|..+..+|.+.|++++|...++++. .+.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 345677778888889999999999888875 23457788888899999999999999998877 34467888999999
Q ss_pred HHhcCCHHHHHHHHHHHhhhC------CCCchHHHHHHHHHhh
Q 036165 528 CKNHGNIELAEIAAKHLSELE------PESAANNMLLTDLYAN 564 (566)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~ 564 (566)
+...|++++|...++++++.+ |+++.....+..+..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 999999999999999999999 9999999888887654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-07 Score=77.31 Aligned_cols=117 Identities=9% Similarity=-0.058 Sum_probs=99.9
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHH
Q 036165 447 KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR----TEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFV 520 (566)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~ 520 (566)
+.+...+..+...+...|++++|...+++..+. .|+ ...+..+..+|...|++++|...+++.. .+.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence 345667888888899999999999999998853 565 6778888999999999999999998876 3346788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 521 WGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 521 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
|..+..++...|++++|...++++++.+|+++.....+..+....|
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 147 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPSS 147 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhhcC
Confidence 8999999999999999999999999999999999999998876543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.1e-07 Score=85.57 Aligned_cols=194 Identities=10% Similarity=-0.080 Sum_probs=130.4
Q ss_pred ccCchHHHHHHHHHHHHhCCCCcHhHHHHH-------HHHHHhcCCHHHHHHHHHhcCC--C-------C----------
Q 036165 362 SAANMRRGKEIHGCAIVMGVEGDLHVRSAL-------VDMYAKCGFISEARTLFDKMSE--R-------N---------- 415 (566)
Q Consensus 362 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~--~-------~---------- 415 (566)
..++.+.|.+.|..+.+..+. ....|..+ ...+.+.++..++...+++-.. | +
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 356666677777776665543 34455544 3444444444455444444433 1 1
Q ss_pred -----hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC--hhH
Q 036165 416 -----TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR--TEH 488 (566)
Q Consensus 416 -----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~ 488 (566)
...+-.....+...|++++|.++|+.+.... |+......+...+.+.+++++|+..|+..... . .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~-p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG-SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT-CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHH
Confidence 1123345566778888999988888877643 33336666666888899999999999865432 1 111 236
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCC---C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHH
Q 036165 489 YACMVDLLGRAGRLAEAYEMIKTMSTE---P--DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTD 560 (566)
Q Consensus 489 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 560 (566)
+..+..++.+.|++++|++.|++.... | ....+.....++.+.|+.++|...|++++..+|+ +.+...|.+
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 777888999999999999999988622 3 2346777788889999999999999999999998 777766654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=1.6e-07 Score=73.42 Aligned_cols=112 Identities=12% Similarity=-0.040 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHH
Q 036165 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGA 527 (566)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~ 527 (566)
...+..+...+...|++++|...++++... .+.+...+..+..++.+.|++++|...++++. .+.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 446677777888888888888888888865 23466778888888888899999988888876 33467788889999
Q ss_pred HHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHh
Q 036165 528 CKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563 (566)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 563 (566)
+...|++++|...++++++.+|+++..+..++.+..
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 999999999999999999999999999998887753
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.7e-07 Score=87.14 Aligned_cols=160 Identities=11% Similarity=-0.063 Sum_probs=111.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Ch------hHHHHHHHHHHhcCChHHHHHHHHHhhhcCC----CC--HH
Q 036165 387 VRSALVDMYAKCGFISEARTLFDKMSE--R-NT------VTWNSMIFGCANHGYCDEAIELFNQMEERKK----LD--HL 451 (566)
Q Consensus 387 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~--~~ 451 (566)
.+...+..+...|++++|...+.+..+ + .. ..+..+...+...|++++|...+++..+... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344566677788888888887765442 1 11 1233455566777888899888888776411 11 34
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CC-------CH
Q 036165 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR-----TEHYACMVDLLGRAGRLAEAYEMIKTMST-EP-------DL 518 (566)
Q Consensus 452 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p-------~~ 518 (566)
+++.+...|...|++++|...++++.+.....|+ ..++..++.+|.+.|++++|...+++... .+ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888888899999999988888732111222 25778888888999999999888887651 11 15
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHhh
Q 036165 519 FVWGALLGACKNHGNIELA-EIAAKHLSE 546 (566)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 546 (566)
.+|..+..+|.+.|++++| ...++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6778888888899999998 777888775
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.79 E-value=9.5e-07 Score=82.06 Aligned_cols=157 Identities=11% Similarity=-0.068 Sum_probs=119.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC--C---C----hhHHHHHHHHHHhcCChHHHHHHHHHhhhc--CCCC----HHHHH
Q 036165 390 ALVDMYAKCGFISEARTLFDKMSE--R---N----TVTWNSMIFGCANHGYCDEAIELFNQMEER--KKLD----HLSFT 454 (566)
Q Consensus 390 ~l~~~~~~~g~~~~A~~~~~~~~~--~---~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~----~~~~~ 454 (566)
..+..+...|++++|...+++..+ + + ...+..+...+...+++++|+..++++.+. ..++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346778889999999999988664 1 1 112334666677778999999999999885 2233 23689
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhc----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------CCC-HHHH
Q 036165 455 AVLTACCHVGLVELGQRLFNMMQEKY----KIMPR-TEHYACMVDLLGRAGRLAEAYEMIKTMST-------EPD-LFVW 521 (566)
Q Consensus 455 ~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~p~-~~~~ 521 (566)
.+..+|...|++++|...++++.+.. +..+. ..++..++.+|.+.|++++|...+++... .+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 99999999999999999999988531 11111 24778899999999999999999988761 122 5678
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHhh
Q 036165 522 GALLGACKNHG-NIELAEIAAKHLSE 546 (566)
Q Consensus 522 ~~l~~~~~~~g-~~~~A~~~~~~~~~ 546 (566)
..+..+|.+.| ++++|...++++++
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88999999999 56999999999986
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=8e-06 Score=76.12 Aligned_cols=231 Identities=8% Similarity=-0.023 Sum_probs=164.7
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-chHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhc-C-CHHHH
Q 036165 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA-NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKC-G-FISEA 404 (566)
Q Consensus 328 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~A 404 (566)
.+..++|++++++++... +-+...++.--..+...| .++++...++.++...++ +..+++.-..++.+. + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHH
Confidence 344457777777777653 233344555555555566 477778888777776554 666676666666665 6 78899
Q ss_pred HHHHHhcCC---CChhHHHHHHHHHHhcCChH--------HHHHHHHHhhhcCCCCHHHHHHHHHHHhccCC-------h
Q 036165 405 RTLFDKMSE---RNTVTWNSMIFGCANHGYCD--------EAIELFNQMEERKKLDHLSFTAVLTACCHVGL-------V 466 (566)
Q Consensus 405 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~ 466 (566)
+.+++++.+ .|..+|+--.-.+.+.|.++ ++++.++++.+..+-|...|+.....+.+.+. +
T Consensus 145 L~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 145 IEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHH
Confidence 999998886 45667776655555555555 89999999999888899999999988888876 6
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH--------------------HHHHHHHHhcCC--------CCCH
Q 036165 467 ELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL--------------------AEAYEMIKTMST--------EPDL 518 (566)
Q Consensus 467 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~--------~p~~ 518 (566)
+++++.+++++.. .+-|...|+.+-..+.+.|+. .+..++..++.. .+++
T Consensus 225 ~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 225 QDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 8899999888875 345677888887777777654 445555555542 2577
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHh-hhCCCCchHHHHHHHHH
Q 036165 519 FVWGALLGACKNHGNIELAEIAAKHLS-ELEPESAANNMLLTDLY 562 (566)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~~ 562 (566)
..+..++..|...|+.++|.++++.+. +.+|-...+....++.+
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~~ 347 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRREC 347 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHhh
Confidence 888899999999999999999999997 67888777776665544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.75 E-value=8.1e-09 Score=98.04 Aligned_cols=146 Identities=8% Similarity=-0.081 Sum_probs=104.3
Q ss_pred CCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC---------------HHHHHHHHHHH
Q 036165 399 GFISEARTLFDKMSE--R-NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLD---------------HLSFTAVLTAC 460 (566)
Q Consensus 399 g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~ 460 (566)
+++++|...++...+ | +...|..+...|.+.|++++|...|++..+..+.+ ...|..+..++
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 344455544444332 2 34567777888888888888888888888775544 46778888888
Q ss_pred hccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHH-
Q 036165 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELA- 537 (566)
Q Consensus 461 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A- 537 (566)
.+.|++++|+..++++.+. .+.+...|..+..+|...|++++|...|+++. .+.+...+..+..++.+.|+.++|
T Consensus 207 ~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888765 23456777788888888888888888888776 334566777777788888888777
Q ss_pred HHHHHHHhh
Q 036165 538 EIAAKHLSE 546 (566)
Q Consensus 538 ~~~~~~~~~ 546 (566)
...+++|++
T Consensus 285 ~~~~~~~~~ 293 (336)
T 1p5q_A 285 KKLYANMFE 293 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 456777765
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.74 E-value=9.6e-07 Score=82.04 Aligned_cols=146 Identities=6% Similarity=-0.098 Sum_probs=114.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCCCHH------HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----hhHHH
Q 036165 421 SMIFGCANHGYCDEAIELFNQMEERKKLDHL------SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR----TEHYA 490 (566)
Q Consensus 421 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 490 (566)
..+..+...|++++|..++++..+..+.+.. .+..+...+...|++++|+..++++.+...-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467788999999999999999886322222 3445777788889999999999999874122223 23689
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC----C-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC------chHH
Q 036165 491 CMVDLLGRAGRLAEAYEMIKTMST----E-PD----LFVWGALLGACKNHGNIELAEIAAKHLSELEPES------AANN 555 (566)
Q Consensus 491 ~l~~~~~~~g~~~~A~~~~~~~~~----~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~ 555 (566)
.++.+|...|++++|...++++.. . .+ ..++..+...|.+.|++++|...+++++++.++. ...+
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999998761 1 12 3477889999999999999999999999765433 6789
Q ss_pred HHHHHHHhhcC
Q 036165 556 MLLTDLYANAG 566 (566)
Q Consensus 556 ~~l~~~~~~~g 566 (566)
..+|.+|..+|
T Consensus 240 ~~lg~~~~~~g 250 (293)
T 3u3w_A 240 YQRGECLRKLE 250 (293)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhC
Confidence 99999998876
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.5e-07 Score=79.01 Aligned_cols=108 Identities=12% Similarity=-0.036 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHH
Q 036165 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGA 527 (566)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~ 527 (566)
...+..+...+...|++++|+..|+++.+. .+.+...|..+..+|.+.|++++|...++++. .+.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 345666667777777777777777777764 23356667777777777777777777777766 23456777777777
Q ss_pred HHhcCCHHHHHHHHHHHhhhCCCCchHHHHHH
Q 036165 528 CKNHGNIELAEIAAKHLSELEPESAANNMLLT 559 (566)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 559 (566)
|...|++++|...++++++++|+++..+...+
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 88888888888888888888887777544443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=2e-08 Score=87.43 Aligned_cols=143 Identities=9% Similarity=-0.075 Sum_probs=65.6
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCH----------------HHHH
Q 036165 394 MYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDH----------------LSFT 454 (566)
Q Consensus 394 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------~~~~ 454 (566)
.....|+++++.+.++...+ .....+..+...+...|++++|...|++..+..+.+. ..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 33444555555555543222 1233455566666677777777777777766533332 4444
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcC
Q 036165 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHG 532 (566)
Q Consensus 455 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g 532 (566)
.+..++...|++++|+..++++.+. .+.+...+..+..+|...|++++|...|++.. .+.+...+..+..++...|
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 5555555555555555555555443 12233444444555555555555555554443 1223344444444444444
Q ss_pred CHHHHH
Q 036165 533 NIELAE 538 (566)
Q Consensus 533 ~~~~A~ 538 (566)
+.+++.
T Consensus 171 ~~~~~~ 176 (198)
T 2fbn_A 171 EARKKD 176 (198)
T ss_dssp HHHC--
T ss_pred HHHHHH
Confidence 444443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.6e-06 Score=78.55 Aligned_cols=200 Identities=12% Similarity=0.082 Sum_probs=163.4
Q ss_pred CchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC--CHHHHHHHHHhcCC---CChhHHHHHHHHH----Hhc---CC
Q 036165 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG--FISEARTLFDKMSE---RNTVTWNSMIFGC----ANH---GY 431 (566)
Q Consensus 364 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~l~~~~----~~~---~~ 431 (566)
...++|....+.++...+. +..+++.-...+...| ++++++..++.+.. .+..+|+.-...+ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 3446888999999887655 6677888888888888 99999999998875 4556677655555 445 78
Q ss_pred hHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChH--HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC------HH
Q 036165 432 CDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVE--LGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGR------LA 503 (566)
Q Consensus 432 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~ 503 (566)
+++++++++++.+..+.|..+|+.-..++.+.|.++ ++++.++++.+. . +-|...|+.-..++.+.|+ ++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-D-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 999999999999988889999999999999999988 999999999986 3 4477788887777777776 89
Q ss_pred HHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHhhhC---CCCchHHHHHHHHHhhcC
Q 036165 504 EAYEMIKTMS--TEPDLFVWGALLGACKNHGNIE-LAEIAAKHLSELE---PESAANNMLLTDLYANAG 566 (566)
Q Consensus 504 ~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g 566 (566)
++++.++++. ..-|...|+.+...+.+.|+.. ++....+++.+.+ |.++.+...++.+|.+.|
T Consensus 204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~ 272 (306)
T 3dra_A 204 EELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK 272 (306)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence 9999999887 4468889999999998888744 4666888877766 889999999999998765
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.72 E-value=5.1e-07 Score=75.58 Aligned_cols=128 Identities=11% Similarity=-0.046 Sum_probs=96.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 036165 417 VTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496 (566)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 496 (566)
..+..+...+...|++++|...|++..+..+.+...+..+..++...|++++|...+++..+. .+.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 456667777778888888888888888776677788888888888888888888888888765 234567788888888
Q ss_pred HhcCCHHHHHHHHHhcC--CCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHhh
Q 036165 497 GRAGRLAEAYEMIKTMS--TEPDLFVWGALL--GACKNHGNIELAEIAAKHLSE 546 (566)
Q Consensus 497 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~ 546 (566)
.+.|++++|...++++. .+.+...+..+. ..+...|++++|...+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888888888888876 233455553333 336777888888888887764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.6e-07 Score=80.39 Aligned_cols=151 Identities=15% Similarity=0.069 Sum_probs=82.8
Q ss_pred hcCCHHHHHH---HHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhc--CC----CCHHHHHHHHHHHhccCChH
Q 036165 397 KCGFISEART---LFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEER--KK----LDHLSFTAVLTACCHVGLVE 467 (566)
Q Consensus 397 ~~g~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~----~~~~~~~~l~~~~~~~g~~~ 467 (566)
..|++++|.+ .+..-.......+..+...+...|++++|...+++..+. .. ....++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 333222123445555666666666666666666665553 11 12234566666666777777
Q ss_pred HHHHHHHHhHHhcCCCC-C----hhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCC----HHHHHHHHHHHHhcCCH
Q 036165 468 LGQRLFNMMQEKYKIMP-R----TEHYACMVDLLGRAGRLAEAYEMIKTMS----TEPD----LFVWGALLGACKNHGNI 534 (566)
Q Consensus 468 ~a~~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~ 534 (566)
+|...+++..+...-.+ + ...+..+...+...|++++|...+++.. ..++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 77776666554311111 1 2345566666777777777777666654 1122 22345666667777777
Q ss_pred HHHHHHHHHHhhh
Q 036165 535 ELAEIAAKHLSEL 547 (566)
Q Consensus 535 ~~A~~~~~~~~~~ 547 (566)
++|...+++++++
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.68 E-value=7.1e-08 Score=88.99 Aligned_cols=192 Identities=13% Similarity=0.015 Sum_probs=133.9
Q ss_pred CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHH
Q 036165 349 TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFG 425 (566)
Q Consensus 349 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 425 (566)
+...+..+...+...|++++|...+..+++..+. +...+..+..+|.+.|++++|...+++..+ .+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4567778888999999999999999999987644 678888999999999999999999998876 456788888999
Q ss_pred HHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 036165 426 CANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505 (566)
Q Consensus 426 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 505 (566)
|...|++++|...|++..+..+.+...+...+..... ...+. .+...... ..+.+......+...+ .|++++|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~-~~~~~~~i~~~l~~l~--~~~~~~A 154 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKK-RWNSIEER-RIHQESELHSYLTRLI--AAERERE 154 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHH-HHHHHHHT-CCCCCCHHHHHHHHHH--HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHH-HHHHHHHH-HHhhhHHHHHHHHHHH--HHHHHHH
Confidence 9999999999999999887632222122222222211 11112 22223333 4555666555554433 6899999
Q ss_pred HHHHHhcC-CCCCHHH-HHHHHHHHHhc-CCHHHHHHHHHHHhhhC
Q 036165 506 YEMIKTMS-TEPDLFV-WGALLGACKNH-GNIELAEIAAKHLSELE 548 (566)
Q Consensus 506 ~~~~~~~~-~~p~~~~-~~~l~~~~~~~-g~~~~A~~~~~~~~~~~ 548 (566)
.+.++++. ..|+... ...+...+.+. +.+++|.++|+++.+..
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 99998876 4465433 34444445444 66888999999887643
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=9.3e-06 Score=75.32 Aligned_cols=230 Identities=13% Similarity=0.043 Sum_probs=162.3
Q ss_pred hcCChh-HHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCc----------hHHHHHHHHHHHHhCCCCcHhHHHHHHHH
Q 036165 327 HNFCND-EAFDTFKEMLSQGFCPTSAT-ISSILPACASAAN----------MRRGKEIHGCAIVMGVEGDLHVRSALVDM 394 (566)
Q Consensus 327 ~~g~~~-~A~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 394 (566)
+.|.++ +|+..+..++.. .|+..| ++.--..+...+. ++++..+++.+....++ +..+++.-.-+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 344443 677777777654 344333 3322222222222 56777788888876655 67777777777
Q ss_pred HHhcC--CHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCC-hHHHHHHHHHhhhcCCCCHHHHHHHHHHHhcc-----
Q 036165 395 YAKCG--FISEARTLFDKMSE---RNTVTWNSMIFGCANHGY-CDEAIELFNQMEERKKLDHLSFTAVLTACCHV----- 463 (566)
Q Consensus 395 ~~~~g--~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 463 (566)
+.+.| .++++..+++++.+ .|..+|+.-.-++...|. ++++++.+.++.+..+.|...|+.....+...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccc
Confidence 77777 48899999988875 677788877777778887 58999999999988888888888877766655
Q ss_pred ---------CChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc-----------CCHHHHHHHHHhcC-CCCCHHHHH
Q 036165 464 ---------GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA-----------GRLAEAYEMIKTMS-TEPDLFVWG 522 (566)
Q Consensus 464 ---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~-~~p~~~~~~ 522 (566)
+.++++++.++.+... .+-|...|+.+-..+.+. +.++++++.++++. ..||. .|.
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~ 274 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWC 274 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHH
T ss_pred cccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chH
Confidence 4578899999988875 345677787766666655 46788999998887 45653 343
Q ss_pred HHHHH-----HHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHH
Q 036165 523 ALLGA-----CKNHGNIELAEIAAKHLSELEPESAANNMLLTDLY 562 (566)
Q Consensus 523 ~l~~~-----~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 562 (566)
.+..+ ....|..+++...+.++.+++|.....|..+..-+
T Consensus 275 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 275 LLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 22222 22467889999999999999999999998886543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.67 E-value=6.4e-07 Score=71.11 Aligned_cols=94 Identities=7% Similarity=-0.053 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 036165 418 TWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLG 497 (566)
Q Consensus 418 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 497 (566)
.+......|.+.|++++|++.|++..+..+.+...|..+..++...|++++|+..++++++. -+.+...|..+..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHH
Confidence 45555666666777777777777766666666666777777777777777777777776654 1234556666677777
Q ss_pred hcCCHHHHHHHHHhcC
Q 036165 498 RAGRLAEAYEMIKTMS 513 (566)
Q Consensus 498 ~~g~~~~A~~~~~~~~ 513 (566)
..|++++|.+.|+++.
T Consensus 93 ~~~~~~~A~~~~~~al 108 (126)
T 4gco_A 93 AMREWSKAQRAYEDAL 108 (126)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH
Confidence 7777777777776665
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.66 E-value=1.9e-07 Score=86.09 Aligned_cols=189 Identities=9% Similarity=-0.023 Sum_probs=106.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHH
Q 036165 314 DVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVD 393 (566)
Q Consensus 314 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 393 (566)
+...+..+...+...|++++|+..|++.++.. +.+...+..+..++...|++++|...++.+++..+. +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34556667777777777777777777777653 335666777777777777777777777777765433 5666677777
Q ss_pred HHHhcCCHHHHHHHHHhcCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHhhhc-CCCCHHHHHHHHHHHhccCChHHH
Q 036165 394 MYAKCGFISEARTLFDKMSE--RN-TVTWNSMIFGCANHGYCDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELG 469 (566)
Q Consensus 394 ~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a 469 (566)
+|...|++++|...|++..+ |+ ...+...+....+ ..++... ...... .+.+......+... ..|++++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKRW-NSIEERRIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHHH-HHHHHTCCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHHH-HHHHHHHHhhhHHHHHHHHHH--HHHHHHHH
Confidence 77777777777777776653 11 1111111111111 1111111 112222 34444443333222 25677777
Q ss_pred HHHHHHhHHhcCCCCCh-hHHHHHHHHHHhc-CCHHHHHHHHHhcC
Q 036165 470 QRLFNMMQEKYKIMPRT-EHYACMVDLLGRA-GRLAEAYEMIKTMS 513 (566)
Q Consensus 470 ~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~-g~~~~A~~~~~~~~ 513 (566)
.+.++.+.+ ..|+. .....+...+.+. +.+++|.++|+++.
T Consensus 155 ~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 155 LEECQRNHE---GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197 (281)
T ss_dssp HTTTSGGGT---TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhhhc---cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 777766653 24443 2333344444444 55677777777665
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.7e-07 Score=76.97 Aligned_cols=103 Identities=11% Similarity=-0.085 Sum_probs=85.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036165 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVD 494 (566)
Q Consensus 415 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 494 (566)
+...+..+...+.+.|++++|+..|+++.+..|.+...|..+..++...|++++|+..|+++.+. .+.++..|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHHH
Confidence 34567777888889999999999999998888888889999999999999999999999999875 2335678888999
Q ss_pred HHHhcCCHHHHHHHHHhcC-CCCCHH
Q 036165 495 LLGRAGRLAEAYEMIKTMS-TEPDLF 519 (566)
Q Consensus 495 ~~~~~g~~~~A~~~~~~~~-~~p~~~ 519 (566)
+|.+.|++++|...|+++. ..|+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999998877 446554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.65 E-value=6.9e-07 Score=83.01 Aligned_cols=149 Identities=7% Similarity=-0.078 Sum_probs=115.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCH------HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----hh
Q 036165 418 TWNSMIFGCANHGYCDEAIELFNQMEERKKLDH------LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR----TE 487 (566)
Q Consensus 418 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 487 (566)
.+...+..+...|++++|.+.+++..+..+... ..+..+...+...|++++|...++++.+...-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445567788899999999999998887643333 23445666778899999999999998854111112 35
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC----CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC------Cc
Q 036165 488 HYACMVDLLGRAGRLAEAYEMIKTMS----TEPD-----LFVWGALLGACKNHGNIELAEIAAKHLSELEPE------SA 552 (566)
Q Consensus 488 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~ 552 (566)
+++.++..|...|++++|...++++. ..|+ ..++..+...|...|++++|...++++++..++ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78899999999999999999998876 1222 258889999999999999999999999976432 26
Q ss_pred hHHHHHHHHHhhcC
Q 036165 553 ANNMLLTDLYANAG 566 (566)
Q Consensus 553 ~~~~~l~~~~~~~g 566 (566)
..+..+|.+|...|
T Consensus 237 ~~~~~lg~~y~~~g 250 (293)
T 2qfc_A 237 QLYYQRGECLRKLE 250 (293)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC
Confidence 78899999998776
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.63 E-value=6.1e-07 Score=72.40 Aligned_cols=114 Identities=6% Similarity=-0.178 Sum_probs=81.5
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHH
Q 036165 447 KLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGAL 524 (566)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l 524 (566)
+.+...+..+...+...|++++|...++++... .+.+...|..+..+|...|++++|...++++. .+.+...|..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 345667777777777778888888887777765 23346677777777888888888887777766 33456777778
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhCCC-----CchHHHHHHHHH
Q 036165 525 LGACKNHGNIELAEIAAKHLSELEPE-----SAANNMLLTDLY 562 (566)
Q Consensus 525 ~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~ 562 (566)
..++...|++++|...++++++..|+ +......+..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888887776 555555555443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.6e-06 Score=68.35 Aligned_cols=112 Identities=16% Similarity=0.109 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 036165 417 VTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496 (566)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 496 (566)
..|..+...+...|++++|.+.++++.+..+.+..++..+..++...|++++|..+++++.+. .+.+...+..+..+|
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHH
Confidence 445555666666666666666666666655555666666666666667777777777666654 233455666666667
Q ss_pred HhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHh
Q 036165 497 GRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKN 530 (566)
Q Consensus 497 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~ 530 (566)
.+.|++++|...++++. .+.+...+..+...+..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 77777777777666654 22344445544444433
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.59 E-value=8.1e-07 Score=74.32 Aligned_cols=125 Identities=10% Similarity=0.014 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc
Q 036165 386 HVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCH 462 (566)
Q Consensus 386 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 462 (566)
..+..+...+...|++++|...|++..+ .+...+..+...+...|++++|...+++..+..+.+...+..+..++..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 4455667777777888888887776653 3566777777888888888888888888887767777788888888888
Q ss_pred cCChHHHHHHHHHhHHhcCCCCChhHHH--HHHHHHHhcCCHHHHHHHHHhc
Q 036165 463 VGLVELGQRLFNMMQEKYKIMPRTEHYA--CMVDLLGRAGRLAEAYEMIKTM 512 (566)
Q Consensus 463 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~ 512 (566)
.|++++|...++++.+. . +.+...+. ..+..+.+.|++++|.+.+++.
T Consensus 94 ~~~~~~A~~~~~~a~~~-~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKV-K-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHH-S-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 88888888888888765 1 22334443 3344467778888888877654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.1e-06 Score=69.90 Aligned_cols=115 Identities=11% Similarity=-0.053 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 036165 417 VTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496 (566)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 496 (566)
..+..+...+...|++++|...+++.....+.+...+..+..++...|++++|...++++.+. .+.+...+..+..+|
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHHHH
Confidence 345555566666666666666666666655556666666666666677777777777666654 223455666666667
Q ss_pred HhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCC
Q 036165 497 GRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGN 533 (566)
Q Consensus 497 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~ 533 (566)
.+.|++++|...++++. .+.+...+..+..++.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 77777777777766655 22345556666666655554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.5e-06 Score=78.19 Aligned_cols=138 Identities=11% Similarity=0.012 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC--HHHHHHHHHHHh
Q 036165 386 HVRSALVDMYAKCGFISEARTLFDKMSE--RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLD--HLSFTAVLTACC 461 (566)
Q Consensus 386 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~ 461 (566)
.+...+..++...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+.......|. ...+..+..++.
T Consensus 103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 103 AITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH
Confidence 4555677888899999999999998875 443355566668889999999999998655432221 236788888999
Q ss_pred ccCChHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHH
Q 036165 462 HVGLVELGQRLFNMMQEKYKIMPR--TEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLFVWGAL 524 (566)
Q Consensus 462 ~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l 524 (566)
..|++++|+..|++.... ...|. .........++.+.|+.++|...|+++. ..|+...+..|
T Consensus 183 ~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~~aL 247 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAAL 247 (282)
T ss_dssp HTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 999999999999998753 32253 3466778888999999999999999987 45664444444
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.57 E-value=2e-06 Score=74.67 Aligned_cols=130 Identities=18% Similarity=0.082 Sum_probs=85.4
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---------CChhHHHHHHHHHHhcCChHHHHHHHHHhhhc---CCCC--
Q 036165 384 DLHVRSALVDMYAKCGFISEARTLFDKMSE---------RNTVTWNSMIFGCANHGYCDEAIELFNQMEER---KKLD-- 449 (566)
Q Consensus 384 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~-- 449 (566)
....+..+...|...|++++|...+++..+ ....++..+...+...|++++|...+++..+. .+.+
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 344555555556666666666655554432 12345666777777888888888888877665 2212
Q ss_pred --HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 450 --HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR----TEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 450 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
...+..+...+...|++++|...+++......-..+ ..++..+..++...|++++|.+.+++..
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 235777788888889999998888887643111112 2345778888899999999988887754
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.2e-06 Score=69.95 Aligned_cols=115 Identities=8% Similarity=-0.004 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 036165 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDL 495 (566)
Q Consensus 416 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 495 (566)
...|..+...+...|++++|...|++..+..+.+...+..+..++...|++++|.+.++++.+. .+.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence 3455556666666666666666666666655555666666666666666666666666666654 12345566666666
Q ss_pred HHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcC
Q 036165 496 LGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGACKNHG 532 (566)
Q Consensus 496 ~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g 532 (566)
|.+.|++++|.+.+++.. ..| +...+..+..++.+.|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 666667777666666654 222 3344555555554443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=5.5e-07 Score=70.94 Aligned_cols=99 Identities=13% Similarity=0.019 Sum_probs=73.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHh
Q 036165 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKN 530 (566)
Q Consensus 453 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~ 530 (566)
+..+...+...|++++|+..++++.+. .+.+...|..+..++.+.|++++|...++++. .+.+...|..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 455666777888888888888888865 23366778888888888888888888888876 23467788888888889
Q ss_pred cCCHHHHHHHHHHHhhhCCCCch
Q 036165 531 HGNIELAEIAAKHLSELEPESAA 553 (566)
Q Consensus 531 ~g~~~~A~~~~~~~~~~~p~~~~ 553 (566)
.|++++|+..++++++.+|+++.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHC-------
T ss_pred cCCHHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999988887653
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.55 E-value=6.6e-07 Score=71.17 Aligned_cols=105 Identities=10% Similarity=-0.040 Sum_probs=58.5
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC----C----HHHHH
Q 036165 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP----D----LFVWG 522 (566)
Q Consensus 452 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p----~----~~~~~ 522 (566)
++..+...+.+.|++++|+..|+++.+. .+.+...|..+..+|.+.|++++|++.+++.. ..| + ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 3444555555555555555555555543 12234455555555555555555555555544 111 1 13456
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHH
Q 036165 523 ALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLT 559 (566)
Q Consensus 523 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 559 (566)
.+..++...|++++|++.++++++..|+ +.....|.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~ 123 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVK 123 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence 6667777778888888888888777664 44444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.55 E-value=5.8e-07 Score=69.38 Aligned_cols=102 Identities=16% Similarity=0.031 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC---CHHHHHHH
Q 036165 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP---DLFVWGAL 524 (566)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~~~l 524 (566)
+...+..+...+...|++++|...++++.+. .+.+...+..+..++.+.|++++|...++++. ..| +...|..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 4455666777777888888888888887765 23356677778888888888888888888776 233 47778888
Q ss_pred HHHHHhc-CCHHHHHHHHHHHhhhCCCCc
Q 036165 525 LGACKNH-GNIELAEIAAKHLSELEPESA 552 (566)
Q Consensus 525 ~~~~~~~-g~~~~A~~~~~~~~~~~p~~~ 552 (566)
..++... |++++|.+.++++++..|.++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888888 888888888888888888765
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.7e-06 Score=81.89 Aligned_cols=128 Identities=14% Similarity=0.039 Sum_probs=110.6
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----------------hhHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 036165 384 DLHVRSALVDMYAKCGFISEARTLFDKMSE--RN----------------TVTWNSMIFGCANHGYCDEAIELFNQMEER 445 (566)
Q Consensus 384 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 445 (566)
+...+..+...|.+.|++++|+..|++..+ |+ ...|..+..+|.+.|++++|+..+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466788899999999999999999998774 43 478889999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH-HHHHHhcC
Q 036165 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA-YEMIKTMS 513 (566)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 513 (566)
.+.+...+..+..++...|++++|+..|+++.+. .+.+...+..+..++.+.|++++| ...+++|.
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999875 234567888899999999999988 55666654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.6e-06 Score=67.78 Aligned_cols=106 Identities=13% Similarity=-0.008 Sum_probs=78.8
Q ss_pred HHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC----HHHHHHHH
Q 036165 454 TAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT---EHYACMVDLLGRAGRLAEAYEMIKTMS-TEPD----LFVWGALL 525 (566)
Q Consensus 454 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~ 525 (566)
..+...+...|++++|...++.+.+. . +.+. ..+..+..+|.+.|++++|...++++. ..|+ ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~-~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLEL-Y-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-C-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH-C-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 34556677788888888888888765 1 2222 466777888888888888888888776 2333 56677888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHH
Q 036165 526 GACKNHGNIELAEIAAKHLSELEPESAANNMLLTDL 561 (566)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 561 (566)
.++...|++++|...++++++..|+++........+
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 888899999999999999999999888776655544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1e-06 Score=70.20 Aligned_cols=111 Identities=5% Similarity=-0.100 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCC----HHHH
Q 036165 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMST-----EPD----LFVW 521 (566)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~p~----~~~~ 521 (566)
..+..+...+...|++++|...++++... .+.+...+..+..+|...|++++|...++++.. .++ ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 34555666666677777777777766654 233455666666777777777777777766551 122 5667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhh
Q 036165 522 GALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 522 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 564 (566)
..+..++...|++++|...++++++..| ++.....++.++..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 7777888888888888888888888877 56777777666543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.53 E-value=8.7e-08 Score=95.08 Aligned_cols=145 Identities=5% Similarity=-0.073 Sum_probs=94.1
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC---------------HHHHHHHHHHH
Q 036165 399 GFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLD---------------HLSFTAVLTAC 460 (566)
Q Consensus 399 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~ 460 (566)
+++++|...|+...+ .....|..+...+.+.|++++|...|++..+..+.+ ...|..+..++
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 344455544443332 234467777788888888888888888888764434 46677777777
Q ss_pred hccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHH
Q 036165 461 CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAE 538 (566)
Q Consensus 461 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~ 538 (566)
.+.|++++|+..++++.+. .+.+...|..+..+|...|++++|...|+++. ..| +...+..+..++.+.|+.+++.
T Consensus 328 ~~~g~~~~A~~~~~~al~~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777764 23356667777777777777777777777766 233 4556666777777777776665
Q ss_pred H-HHHHHh
Q 036165 539 I-AAKHLS 545 (566)
Q Consensus 539 ~-~~~~~~ 545 (566)
+ .+++|+
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 3 345554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.7e-06 Score=68.80 Aligned_cols=108 Identities=6% Similarity=-0.066 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcC-CCCC----hhHHHH
Q 036165 417 VTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYK-IMPR----TEHYAC 491 (566)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~p~----~~~~~~ 491 (566)
..+..+...+.+.|++++|++.|++..+..|.+...|..+..++...|++++|++.++++++... ..++ ..+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45667788888888888888888888887777788888888888888888888888888875411 1111 235677
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHH
Q 036165 492 MVDLLGRAGRLAEAYEMIKTMS-TEPDLFVWGAL 524 (566)
Q Consensus 492 l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l 524 (566)
+..++...|++++|.+.|++.. ..|++.+...+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l 122 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHHH
Confidence 7888888889999988888876 45676655443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=2.4e-07 Score=80.46 Aligned_cols=114 Identities=7% Similarity=-0.042 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC--------------hhHHHHHHHHHHhcCCHHHHHHHHHhcC--C
Q 036165 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR--------------TEHYACMVDLLGRAGRLAEAYEMIKTMS--T 514 (566)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 514 (566)
..+..+...+...|++++|...|+++.+...-.|+ ...+..+..+|.+.|++++|...++++. .
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34555555666666666666666666543111110 1455556666666666666666666554 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhh
Q 036165 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 515 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 564 (566)
+.+...+..+..+|...|++++|...++++++.+|+++.++..++.++..
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 33455566666666666666666666666666666666666666665543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.51 E-value=6.7e-07 Score=74.74 Aligned_cols=111 Identities=14% Similarity=-0.041 Sum_probs=79.7
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHHhc------C----------CCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--C
Q 036165 453 FTAVLTACCHVGLVELGQRLFNMMQEKY------K----------IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--T 514 (566)
Q Consensus 453 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~----------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 514 (566)
+......+.+.|++++|+..|.+..... . .+.+...|..+..+|.+.|++++|...++++. .
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 4444445555555555555555544320 0 11234578888889999999999999998877 3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCc-hHHHHHHHHHh
Q 036165 515 EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESA-ANNMLLTDLYA 563 (566)
Q Consensus 515 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~ 563 (566)
+.+...|..+..+|...|++++|...++++++++|+++ .+...|..+..
T Consensus 94 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999998 66666666543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=6.8e-07 Score=73.32 Aligned_cols=91 Identities=12% Similarity=0.006 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccC
Q 036165 388 RSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVG 464 (566)
Q Consensus 388 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 464 (566)
+..+...+.+.|++++|+..|++... .+...|..+..+|...|++++|+..|++..+..+.+...+..+..++...|
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 103 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXG 103 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence 33344444444444444444444331 233344444444444444444444444444443444444444444444444
Q ss_pred ChHHHHHHHHHhHH
Q 036165 465 LVELGQRLFNMMQE 478 (566)
Q Consensus 465 ~~~~a~~~~~~~~~ 478 (566)
++++|...|+++.+
T Consensus 104 ~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 104 ELAEAESGLFLAQE 117 (148)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.2e-05 Score=81.57 Aligned_cols=166 Identities=7% Similarity=-0.066 Sum_probs=137.1
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCC----------hHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccC-
Q 036165 399 GFISEARTLFDKMSE---RNTVTWNSMIFGCANHGY----------CDEAIELFNQMEERKKLDHLSFTAVLTACCHVG- 464 (566)
Q Consensus 399 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 464 (566)
...++|.+.++++.. .+...|+.-..++...|+ ++++++.++++.+..+.+..+|..-..++.+.|
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 345677888877764 345567766666666666 899999999999988889999999999999999
Q ss_pred -ChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHhcC-C-CCCHHHHHHHHHHHHhc---------
Q 036165 465 -LVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG-RLAEAYEMIKTMS-T-EPDLFVWGALLGACKNH--------- 531 (566)
Q Consensus 465 -~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~--------- 531 (566)
+++++.+.++++.+. .+-+...|+.-..++.+.| .++++++.++++. . .-+...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 679999999999986 2447788988888888999 8999999999988 2 34788898888777663
Q ss_pred -----CCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 532 -----GNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 532 -----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
+.++++.+.++++++.+|++..++..+.+++.+.|
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence 56899999999999999999999999999997643
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.3e-06 Score=74.08 Aligned_cols=114 Identities=6% Similarity=-0.013 Sum_probs=53.4
Q ss_pred CchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHH-HHhcCCh--HHHHH
Q 036165 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFG-CANHGYC--DEAIE 437 (566)
Q Consensus 364 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~-~~~~~~~--~~A~~ 437 (566)
|++++|...++...+..+. +...+..+..+|...|++++|...|++..+ .+...+..+..+ +...|++ ++|..
T Consensus 24 ~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~ 102 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA 102 (177)
T ss_dssp ---CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 3344444444444433221 334444455555555555555555544432 233344444444 4445554 55555
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 036165 438 LFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478 (566)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 478 (566)
.++++.+..+.+...+..+..++...|++++|...++++.+
T Consensus 103 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 103 MIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 55555554444445555555555555555555555555554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.46 E-value=3.1e-07 Score=71.95 Aligned_cols=99 Identities=9% Similarity=-0.028 Sum_probs=71.7
Q ss_pred ccCChHHHHHHHHHhHHhcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 036165 462 HVGLVELGQRLFNMMQEKYK--IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELA 537 (566)
Q Consensus 462 ~~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A 537 (566)
..|++++|+..|+++.+. + -+.+...+..+..+|.+.|++++|...++++. .+.+..++..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence 357788888888888753 2 12235677788888888888888888888876 334577788888888899999999
Q ss_pred HHHHHHHhhhCCCCchHHHHHHHH
Q 036165 538 EIAAKHLSELEPESAANNMLLTDL 561 (566)
Q Consensus 538 ~~~~~~~~~~~p~~~~~~~~l~~~ 561 (566)
+..++++++..|+++........+
T Consensus 81 ~~~~~~al~~~p~~~~~~~~~~ai 104 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQSYKQAI 104 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHHTHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHH
Confidence 999999998888887765544433
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=7.4e-06 Score=63.59 Aligned_cols=108 Identities=12% Similarity=0.015 Sum_probs=77.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 036165 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDL 495 (566)
Q Consensus 416 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 495 (566)
...+..+...+...|++++|...|++.....+.+...+..+..++...|++++|...++++.+. .+.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 3456666777777888888888888877776667777888888888888888888888888765 23356677778888
Q ss_pred HHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHH
Q 036165 496 LGRAGRLAEAYEMIKTMS-TEP-DLFVWGALL 525 (566)
Q Consensus 496 ~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~ 525 (566)
+...|++++|.+.+++.. ..| +...+..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 888888888888888766 233 344444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.42 E-value=1.7e-06 Score=63.85 Aligned_cols=82 Identities=20% Similarity=0.203 Sum_probs=72.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHH
Q 036165 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLY 562 (566)
Q Consensus 485 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 562 (566)
+...+..+...+.+.|++++|...+++.. .+.+...|..+..++.+.|++++|...++++++.+|+++..+..++.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34667788888999999999999998876 3446788899999999999999999999999999999999999999999
Q ss_pred hhcC
Q 036165 563 ANAG 566 (566)
Q Consensus 563 ~~~g 566 (566)
..+|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 8876
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.42 E-value=6.7e-06 Score=65.11 Aligned_cols=95 Identities=13% Similarity=-0.034 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 036165 417 VTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496 (566)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 496 (566)
..|..+...+...|++++|+..|++..+..+.+...|..+..++...|++++|+..++++.+. .+.+...|..+..+|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 345666677777788888888888877776667777888888888888888888888887765 233466777777888
Q ss_pred HhcCCHHHHHHHHHhcC
Q 036165 497 GRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 497 ~~~g~~~~A~~~~~~~~ 513 (566)
...|++++|...++++.
T Consensus 83 ~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 83 IAVKEYASALETLDAAR 99 (126)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHH
Confidence 88888888888877765
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.41 E-value=0.00011 Score=72.29 Aligned_cols=161 Identities=6% Similarity=-0.182 Sum_probs=96.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHHccCchHHHHHHHHHHHHh----CCCC-cHhH
Q 036165 318 WTSVISGLVHNFCNDEAFDTFKEMLSQG-FCPTS----ATISSILPACASAANMRRGKEIHGCAIVM----GVEG-DLHV 387 (566)
Q Consensus 318 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 387 (566)
+..+...|...|++++|.+.+.++.+.- ..++. .+.+.+...+...|+.+.+..++...... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4455666666666666666666654321 01111 11222233344556677777766665432 2221 2456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--------C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhc---CCCC----HH
Q 036165 388 RSALVDMYAKCGFISEARTLFDKMSE--------R-NTVTWNSMIFGCANHGYCDEAIELFNQMEER---KKLD----HL 451 (566)
Q Consensus 388 ~~~l~~~~~~~g~~~~A~~~~~~~~~--------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~----~~ 451 (566)
+..+...|...|++++|..++++... + ....+..++..|...|++++|..++++.... ...+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 66777888888888888877775542 1 1346777778888888888888888877654 2222 13
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHH
Q 036165 452 SFTAVLTACCHVGLVELGQRLFNMMQE 478 (566)
Q Consensus 452 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 478 (566)
.+..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456666677788888888877776654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.2e-06 Score=71.02 Aligned_cols=105 Identities=13% Similarity=-0.050 Sum_probs=77.7
Q ss_pred HHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-------------hhHHHHHHHHHHhcCCHHHHHHHHHhcC-C----
Q 036165 453 FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR-------------TEHYACMVDLLGRAGRLAEAYEMIKTMS-T---- 514 (566)
Q Consensus 453 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---- 514 (566)
+......+.+.|++++|+..|+++.+. .|+ ...|..+..++.+.|++++|+..+++.+ .
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 444555566666777777777666654 222 2277888888888888888888877766 4
Q ss_pred ---CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHH
Q 036165 515 ---EPD-LFVW----GALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTD 560 (566)
Q Consensus 515 ---~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 560 (566)
.|+ ...| .....++...|++++|+..|++++++.|++.....-+..
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~ 144 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER 144 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 665 5567 888999999999999999999999999988776554443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=2.2e-05 Score=73.12 Aligned_cols=169 Identities=11% Similarity=0.006 Sum_probs=124.3
Q ss_pred HhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcC-ChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhcc-C-ChHHH
Q 036165 396 AKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHG-YCDEAIELFNQMEERKKLDHLSFTAVLTACCHV-G-LVELG 469 (566)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~a 469 (566)
.+.+..++|+.+++++.. .+...|+.-...+...| .++++++.++.+....+.+..+|+.-..++... + +++++
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred HhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHH
Confidence 334455667777776664 34456666666666667 488888888888877777777888777777666 6 77888
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH--------HHHHHHHhcC--CCCCHHHHHHHHHHHHhcCC------
Q 036165 470 QRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLA--------EAYEMIKTMS--TEPDLFVWGALLGACKNHGN------ 533 (566)
Q Consensus 470 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~------ 533 (566)
+++++.+.+. .+-+...|+.-..++.+.|.++ ++++.++++. ..-|...|+.....+.+.+.
T Consensus 145 L~~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 145 IEYIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchH
Confidence 8888888753 3445667776666666666555 7888888776 34577888888777777775
Q ss_pred -HHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 534 -IELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 534 -~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
++++.+.++++++.+|+|.+++..+.+++.+.|
T Consensus 223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 789999999999999999999999998887654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.35 E-value=3.2e-06 Score=67.23 Aligned_cols=112 Identities=11% Similarity=-0.001 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCC-CCC----hhHHHH
Q 036165 417 VTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI-MPR----TEHYAC 491 (566)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~p~----~~~~~~ 491 (566)
..|..+...+...|++++|...|++..+..+.+...+..+..++...|++++|...++++.....- .++ ...+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 345666677777778888888887777766667777777777777888888888888777654111 111 556777
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHH
Q 036165 492 MVDLLGRAGRLAEAYEMIKTMS-TEPDLFVWGALLGAC 528 (566)
Q Consensus 492 l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~ 528 (566)
+..+|.+.|++++|.+.++++. ..|+...+..+....
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 7777888888888888887765 345655555554443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.35 E-value=7.1e-06 Score=68.53 Aligned_cols=92 Identities=10% Similarity=-0.043 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhcc
Q 036165 387 VRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHV 463 (566)
Q Consensus 387 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 463 (566)
.+..+...+.+.|++++|+..|++..+ .+...|..+..+|...|++++|+..|++..+..+.+...|..+..++...
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 334444444444444444444444332 23334444444444555555555555554444444444445555555555
Q ss_pred CChHHHHHHHHHhHH
Q 036165 464 GLVELGQRLFNMMQE 478 (566)
Q Consensus 464 g~~~~a~~~~~~~~~ 478 (566)
|++++|...|+++.+
T Consensus 93 g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 93 ADYKGAKEAYEKGIE 107 (164)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 555555555554444
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.34 E-value=1.2e-05 Score=65.33 Aligned_cols=95 Identities=14% Similarity=0.067 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 036165 417 VTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496 (566)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 496 (566)
..+..+...+.+.|++++|...|++.....+.+...|..+..++...|++++|+..++++... .+.++..+..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHH
Confidence 344555666777777777777777777766667777777777777777777777777777765 233456667777777
Q ss_pred HhcCCHHHHHHHHHhcC
Q 036165 497 GRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 497 ~~~g~~~~A~~~~~~~~ 513 (566)
...|++++|...|+++.
T Consensus 97 ~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 77777777777777765
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=9.8e-05 Score=68.49 Aligned_cols=191 Identities=10% Similarity=0.063 Sum_probs=142.8
Q ss_pred hHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCC----------HHHHHHHHHhcCC---CChhHHHHHHHHHHhcC--
Q 036165 366 MRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGF----------ISEARTLFDKMSE---RNTVTWNSMIFGCANHG-- 430 (566)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~-- 430 (566)
.++|....+.++...+. +..+++.--..+...+. ++++..+++.+.. .+..+|+.-.-.+...+
T Consensus 46 s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~ 124 (331)
T 3dss_A 46 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 124 (331)
T ss_dssp SHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSC
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcc
Confidence 34678888888776544 44455543333333222 5778888887764 56778888777777777
Q ss_pred ChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCC-hHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc----------
Q 036165 431 YCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGL-VELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA---------- 499 (566)
Q Consensus 431 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---------- 499 (566)
.+++++..+.++.+..+-|..+|+.-..++...|. ++++++.++.+.+. . +-|...|+....++.+.
T Consensus 125 ~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~-~-p~N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 125 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-N-FSNYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-C-SCCHHHHHHHHHHHHHHSCCC------
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-C-CCCHHHHHHHHHHHHHhhhcccccccc
Confidence 48999999999999988899999998888888898 59999999999986 3 45677888777666655
Q ss_pred ----CCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhhhCCCCchHHHHHH
Q 036165 500 ----GRLAEAYEMIKTMS--TEPDLFVWGALLGACKNH-----------GNIELAEIAAKHLSELEPESAANNMLLT 559 (566)
Q Consensus 500 ----g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 559 (566)
+.++++++.++++. .+-|...|+-+-..+.+. +..+++++.++++++.+|++.=.+..++
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~ 279 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTII 279 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHH
Confidence 45889999999887 445788887776666655 4689999999999999999854444443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.32 E-value=3.4e-06 Score=80.86 Aligned_cols=129 Identities=9% Similarity=-0.076 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 036165 417 VTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496 (566)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 496 (566)
..+..+...+.+.|++++|++.|++..+..+... ..... +...+. .+.+...|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-----------~~~~~-------~~~~~~--~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-----------AAAED-------ADGAKL--QPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------HHSCH-------HHHGGG--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-----------cccCh-------HHHHHH--HHHHHHHHHHHHHHH
Confidence 4466666667777777777777776665210000 00000 000000 012346677788888
Q ss_pred HhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhc
Q 036165 497 GRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565 (566)
Q Consensus 497 ~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 565 (566)
.+.|++++|.+.++++. ..| +...|..+..+|...|++++|+..++++++++|+++.++..++.++..+
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI 354 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 88888888888888876 233 5777888888888888888888888888888888888888888877653
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.3e-06 Score=81.12 Aligned_cols=150 Identities=9% Similarity=-0.003 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhcc
Q 036165 386 HVRSALVDMYAKCGFISEARTLFDKMSE--RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHV 463 (566)
Q Consensus 386 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 463 (566)
..+..+...+.+.|++++|...|++..+ |+... +...++.+++...+. ...|..+..++.+.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~---------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK---------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH---------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH---------HHHHHHHHHHHHHc
Confidence 3455566666666777777776665543 22111 112222222222111 13788899999999
Q ss_pred CChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHH-HHhcCCHHHHHHH
Q 036165 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGA-CKNHGNIELAEIA 540 (566)
Q Consensus 464 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~-~~~~g~~~~A~~~ 540 (566)
|++++|+..++++.+. .+.+...|..+..+|...|++++|...|+++. ..| +...+..+... ....+..+++...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999875 23467889999999999999999999999987 345 44555555555 3455678889999
Q ss_pred HHHHhhhCCCCch
Q 036165 541 AKHLSELEPESAA 553 (566)
Q Consensus 541 ~~~~~~~~p~~~~ 553 (566)
|+++++..|+++.
T Consensus 322 ~~~~l~~~p~~~~ 334 (338)
T 2if4_A 322 YKGIFKGKDEGGA 334 (338)
T ss_dssp -------------
T ss_pred HHHhhCCCCCCCC
Confidence 9999999998764
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.29 E-value=2.1e-05 Score=63.10 Aligned_cols=97 Identities=9% Similarity=-0.096 Sum_probs=66.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036165 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVD 494 (566)
Q Consensus 415 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 494 (566)
+...|..+...+...|++++|...|++..+..+.+...+..+..++...|++++|...++++.+. . +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-D-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C-chhHHHHHHHHH
Confidence 45566666667777777777777777776666666667777777777777777777777777654 1 234566667777
Q ss_pred HHHhcCCHHHHHHHHHhcC
Q 036165 495 LLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 495 ~~~~~g~~~~A~~~~~~~~ 513 (566)
+|...|++++|...++++.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 7777777777777776655
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.28 E-value=4.8e-06 Score=69.04 Aligned_cols=131 Identities=12% Similarity=0.008 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhc--CCCCH----HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----hh
Q 036165 418 TWNSMIFGCANHGYCDEAIELFNQMEER--KKLDH----LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR----TE 487 (566)
Q Consensus 418 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 487 (566)
++..+...+...|++++|...+++..+. ..++. .++..+...+...|++++|...+++..+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3445555555666666666666665544 11111 25666666777777777777777766543111111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC----CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC
Q 036165 488 HYACMVDLLGRAGRLAEAYEMIKTMST----EPD----LFVWGALLGACKNHGNIELAEIAAKHLSELE 548 (566)
Q Consensus 488 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 548 (566)
.+..+..++...|++++|.+.+++... ..+ ..++..+...+...|++++|...++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 566677777777888888777776551 111 3456677778888888999988888888654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=3.8e-06 Score=66.03 Aligned_cols=79 Identities=20% Similarity=0.083 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhc
Q 036165 488 HYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565 (566)
Q Consensus 488 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 565 (566)
.+..+...+.+.|++++|...++++. .+.+...|..+..++...|++++|+..++++++++|+++.++..|+.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 45667888999999999999999987 3447889999999999999999999999999999999999999999999876
Q ss_pred C
Q 036165 566 G 566 (566)
Q Consensus 566 g 566 (566)
|
T Consensus 99 g 99 (121)
T 1hxi_A 99 H 99 (121)
T ss_dssp H
T ss_pred C
Confidence 4
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.28 E-value=9.4e-06 Score=62.32 Aligned_cols=96 Identities=16% Similarity=0.075 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC--ChhHHHHHH
Q 036165 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP--RTEHYACMV 493 (566)
Q Consensus 416 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~ 493 (566)
...|..+...+...|++++|...+++..+..+.+...+..+..++...|++++|.+.++++.+. .+. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHHHHH
Confidence 4456666777777788888888888777766667777777777788888888888888877764 222 466777777
Q ss_pred HHHHhc-CCHHHHHHHHHhcC
Q 036165 494 DLLGRA-GRLAEAYEMIKTMS 513 (566)
Q Consensus 494 ~~~~~~-g~~~~A~~~~~~~~ 513 (566)
.++.+. |++++|.+.++++.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHHhCCHHHHHHHHHHHh
Confidence 788888 88888888887766
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.26 E-value=1.5e-06 Score=86.60 Aligned_cols=115 Identities=12% Similarity=-0.019 Sum_probs=59.1
Q ss_pred HHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 036165 426 CANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEA 505 (566)
Q Consensus 426 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 505 (566)
+.+.|++++|.+.|++..+..+.+...+..+..++.+.|++++|++.++++.+. .+.+...+..+..+|.+.|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 344555666666666555554445555666666666666666666666665543 122345555556666666666666
Q ss_pred HHHHHhcC-CCC-CHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 036165 506 YEMIKTMS-TEP-DLFVWGALLGA--CKNHGNIELAEIAAK 542 (566)
Q Consensus 506 ~~~~~~~~-~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~ 542 (566)
.+.++++. ..| +...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66665554 112 23333333333 555566666666665
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.25 E-value=2.9e-05 Score=76.43 Aligned_cols=191 Identities=10% Similarity=0.011 Sum_probs=133.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHccCchHHHHHHHHHHHHhCCC-CcH
Q 036165 323 SGLVHNFCNDEAFDTFKEMLSQGFCPT----------------SATISSILPACASAANMRRGKEIHGCAIVMGVE-GDL 385 (566)
Q Consensus 323 ~~~~~~g~~~~A~~~~~~m~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~ 385 (566)
..+.+.|++++|++.|.++++...... ...+..+...|...|++++|.+.+..+.+.-.. ++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345566777777777777665421111 123677889999999999999999887663211 121
Q ss_pred ----hHHHHHHHHHHhcCCHHHHHHHHHhcCC--------C-ChhHHHHHHHHHHhcCChHHHHHHHHHhhhc-CCC---
Q 036165 386 ----HVRSALVDMYAKCGFISEARTLFDKMSE--------R-NTVTWNSMIFGCANHGYCDEAIELFNQMEER-KKL--- 448 (566)
Q Consensus 386 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~--- 448 (566)
.+.+.+...+...|++++|..+++.... + -..++..+...|...|++++|..+++++... ...
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 2334445555667899999998876653 1 1346778899999999999999999998765 222
Q ss_pred --CHHHHHHHHHHHhccCChHHHHHHHHHhHHhc-CCC-C-C--hhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 449 --DHLSFTAVLTACCHVGLVELGQRLFNMMQEKY-KIM-P-R--TEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 449 --~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~-p-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
...++..++..|...|++++|..++++..... .+. | . ...+..++..+...|++++|...+.+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 13478888999999999999999998876531 111 1 1 2456777788889999999988776553
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.24 E-value=5e-06 Score=63.99 Aligned_cols=81 Identities=11% Similarity=-0.041 Sum_probs=55.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC------chHHH
Q 036165 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPES------AANNM 556 (566)
Q Consensus 485 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 556 (566)
+...+..+...+.+.|++++|.+.+++.. .+.+...|..+..++.+.|++++|+..++++++.+|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 34456666677777777777777777665 23456667777777777777777777777777777777 66666
Q ss_pred HHHHHHhhc
Q 036165 557 LLTDLYANA 565 (566)
Q Consensus 557 ~l~~~~~~~ 565 (566)
.++.++...
T Consensus 83 ~~~~~~~~~ 91 (111)
T 2l6j_A 83 RLELAQGAV 91 (111)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.8e-05 Score=63.28 Aligned_cols=97 Identities=10% Similarity=-0.051 Sum_probs=55.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCC---HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHH
Q 036165 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLD---HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC 491 (566)
Q Consensus 415 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 491 (566)
+...+..+...+...|++++|...|++..+..+.+ ...+..+..++...|++++|+..++++.+. .+.+...+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHHHH
Confidence 34445555555666666666666666655543322 445555666666666666666666666543 1223455556
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC
Q 036165 492 MVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 492 l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
+..+|...|++++|...+++..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666666666666666554
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.21 E-value=4.8e-06 Score=78.88 Aligned_cols=128 Identities=13% Similarity=-0.044 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 036165 417 VTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLL 496 (566)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 496 (566)
..+..+...+.+.|++++|...|++.....+.+ . .+...|+++++...+. ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~-~-------~~~~~~~~~~~~~~l~-----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDD-F-------MFQLYGKYQDMALAVK-----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHH-H-------HHTCCHHHHHHHHHHH-----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccc-h-------hhhhcccHHHHHHHHH-----------HHHHHHHHHHH
Confidence 345555666666677777777777666543221 1 1222333333322111 13688899999
Q ss_pred HhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHh
Q 036165 497 GRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563 (566)
Q Consensus 497 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 563 (566)
.+.|++++|...++++. .+.+...|..+..+|...|++++|+..++++++++|+++.++..|+.+..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE 309 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 99999999999999987 34578899999999999999999999999999999999999999988754
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.19 E-value=9.4e-06 Score=80.79 Aligned_cols=105 Identities=9% Similarity=-0.041 Sum_probs=92.5
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CC-CCHHHHHHHHHHHHhcC
Q 036165 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TE-PDLFVWGALLGACKNHG 532 (566)
Q Consensus 455 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~g 532 (566)
.+...+...|++++|++.++++.+. .+.+...|..+..+|.+.|++++|.+.++++. .. .+...|..+..+|...|
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3344567889999999999999976 23457889999999999999999999999987 33 46788999999999999
Q ss_pred CHHHHHHHHHHHhhhCCCCchHHHHHHHH
Q 036165 533 NIELAEIAAKHLSELEPESAANNMLLTDL 561 (566)
Q Consensus 533 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 561 (566)
++++|++.++++++.+|+++..+..++.+
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999999999887
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.16 E-value=7.2e-05 Score=59.15 Aligned_cols=91 Identities=13% Similarity=0.086 Sum_probs=60.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCCCH---HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC---hhHHHHHHH
Q 036165 421 SMIFGCANHGYCDEAIELFNQMEERKKLDH---LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR---TEHYACMVD 494 (566)
Q Consensus 421 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~ 494 (566)
.+...+...|++++|...|+++.+..+.+. ..+..+..++...|++++|...++++.+. . +.+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-Y-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-C-CCCcccHHHHHHHHH
Confidence 345566667777777777777766544444 46666777777777777777777777664 1 122 455666777
Q ss_pred HHHhcCCHHHHHHHHHhcC
Q 036165 495 LLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 495 ~~~~~g~~~~A~~~~~~~~ 513 (566)
+|.+.|++++|...++++.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 7777777777777777665
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.14 E-value=2.4e-05 Score=77.52 Aligned_cols=128 Identities=11% Similarity=-0.001 Sum_probs=107.9
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----------------hhHHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 036165 384 DLHVRSALVDMYAKCGFISEARTLFDKMSE--RN----------------TVTWNSMIFGCANHGYCDEAIELFNQMEER 445 (566)
Q Consensus 384 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 445 (566)
....+..+...|.+.|++++|+..|++..+ |+ ...|..+..+|.+.|++++|+..++++.+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 456778889999999999999999998774 33 478889999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHH-HHHHhcC
Q 036165 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAY-EMIKTMS 513 (566)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~ 513 (566)
.+.+...|..+..++...|++++|+..|+++.+. .+-+...+..+..++.+.|+.++|. ..+++|.
T Consensus 347 ~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 347 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999864 2335678888999999999998875 4566665
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.2e-05 Score=64.94 Aligned_cols=127 Identities=9% Similarity=-0.041 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHhhhc--CCCC----HH
Q 036165 387 VRSALVDMYAKCGFISEARTLFDKMSE-----RN----TVTWNSMIFGCANHGYCDEAIELFNQMEER--KKLD----HL 451 (566)
Q Consensus 387 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~----~~ 451 (566)
++..+...|...|++++|...+++..+ ++ ..++..+...+...|++++|.+.+++..+. ..++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 444555555666666666666655442 11 135666667777777777777777776654 1122 33
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR----TEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 452 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
.+..+..++...|++++|.+.+++..+...-..+ ...+..+...|...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 5667777788888888888888777643111111 3456677788888888888888887654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=1.3e-05 Score=64.94 Aligned_cols=57 Identities=14% Similarity=0.047 Sum_probs=38.9
Q ss_pred HHHHHHHHhcC-CC-CCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhhhCCCCchHHHHHH
Q 036165 503 AEAYEMIKTMS-TE-PDLFVWGALLGACKNH-----------GNIELAEIAAKHLSELEPESAANNMLLT 559 (566)
Q Consensus 503 ~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 559 (566)
++|+..|+++. .. .+..+|..+..+|... |++++|++.|+++++++|++..+...+.
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~ 132 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45666665554 22 3455566666666554 5899999999999999999877665543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0001 Score=59.30 Aligned_cols=120 Identities=12% Similarity=-0.089 Sum_probs=98.6
Q ss_pred CChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHH
Q 036165 430 GYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR----AGRLAEA 505 (566)
Q Consensus 430 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 505 (566)
+++++|.+.|++..+...++.. +...|...+.+++|.+.|++..+. | ++..+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-C---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 4678899999998887655554 777777888889999999999876 4 66778888888888 8899999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhCCCCchHHHHHH
Q 036165 506 YEMIKTMSTEPDLFVWGALLGACKN----HGNIELAEIAAKHLSELEPESAANNMLLT 559 (566)
Q Consensus 506 ~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 559 (566)
.++|++.....++..+..|...|.. .++.++|...++++.+.+ ++.....|+
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 9999998866788899999999988 889999999999999886 555555544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.03 E-value=3.6e-05 Score=73.73 Aligned_cols=138 Identities=8% Similarity=-0.132 Sum_probs=78.3
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccC
Q 036165 385 LHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVG 464 (566)
Q Consensus 385 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 464 (566)
...+..+...+.+.|++++|+..|++..+-... ...... .++.....+.+...|..+..++.+.|
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~--------~~~~~~-------~~~~~~~~~~~~~~~~nla~~~~~~g 287 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG--------SRAAAE-------DADGAKLQPVALSCVLNIGACKLKMS 287 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------HHHHSC-------HHHHGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc--------CccccC-------hHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455778899999999999999999876530000 000000 11111111223445666666666666
Q ss_pred ChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CC-CCHHHHHHHHHHHHhcCCHHHHHH
Q 036165 465 LVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TE-PDLFVWGALLGACKNHGNIELAEI 539 (566)
Q Consensus 465 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~g~~~~A~~ 539 (566)
++++|+..++++.+. .+.+...+..+..+|.+.|++++|.+.++++. .. .+...+..+..++.+.++.+++.+
T Consensus 288 ~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 288 DWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666643 12234556666666666666666666666655 22 345555555555555555555543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.01 E-value=5e-05 Score=63.09 Aligned_cols=66 Identities=12% Similarity=0.046 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC
Q 036165 450 HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPD 517 (566)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~ 517 (566)
...|..+..++.+.|++++|+..++++.+. -+.+...|..+..+|...|++++|...|++.. ..|+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 356777777777778888888877777764 23346677777777778888888877777766 3343
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.97 E-value=3.6e-05 Score=59.66 Aligned_cols=76 Identities=9% Similarity=-0.050 Sum_probs=37.9
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036165 435 AIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512 (566)
Q Consensus 435 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 512 (566)
|+..|++..+..+.+...+..+..++...|++++|+..++++.+. .+.+...|..+..+|.+.|++++|...|+++
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444555554444444555555555555555555555555555543 1223344445555555555555555555444
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00049 Score=64.02 Aligned_cols=141 Identities=13% Similarity=-0.008 Sum_probs=97.6
Q ss_pred CChhHHHHHHHHHH--hcC---ChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc---cC-----ChHHHHHHHHHhHHhc
Q 036165 414 RNTVTWNSMIFGCA--NHG---YCDEAIELFNQMEERKKLDHLSFTAVLTACCH---VG-----LVELGQRLFNMMQEKY 480 (566)
Q Consensus 414 ~~~~~~~~l~~~~~--~~~---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g-----~~~~a~~~~~~~~~~~ 480 (566)
.+...|...+.+.. ..+ ...+|..+|++..+..|.....|..+..++.. .+ ........++......
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~ 271 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP 271 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc
Confidence 45566666665543 233 35778889999888777666666655555431 11 1111111222221111
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchH
Q 036165 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAAN 554 (566)
Q Consensus 481 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 554 (566)
..+.++.+|..+...+...|++++|...++++. ..|+...|..+...+.-.|++++|.+.+++++.++|..+++
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~ 346 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTL 346 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHH
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChH
Confidence 235677888888888888899999999999988 56888888888888999999999999999999999988653
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.89 E-value=4.2e-05 Score=59.49 Aligned_cols=60 Identities=10% Similarity=-0.021 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 036165 419 WNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478 (566)
Q Consensus 419 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 478 (566)
+..+..+|...|++++|+..|++..+..+.+...+..+..++...|++++|+..+++..+
T Consensus 30 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 30 YLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333444444444444444444444444333444444444444444444444444444443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.88 E-value=6.2e-05 Score=74.40 Aligned_cols=121 Identities=12% Similarity=-0.013 Sum_probs=68.8
Q ss_pred HHhcCChHHHHHHHHHhhhc----CCCC----HHHHHHHHHHHhccCChHHHHHHHHHhHHh----cC-CCCC-hhHHHH
Q 036165 426 CANHGYCDEAIELFNQMEER----KKLD----HLSFTAVLTACCHVGLVELGQRLFNMMQEK----YK-IMPR-TEHYAC 491 (566)
Q Consensus 426 ~~~~~~~~~A~~~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~p~-~~~~~~ 491 (566)
+..+|++++|+.++++..+. ..++ ..+++.|..+|...|++++|+.+++++.+. +| ..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 33455666666555555433 1121 125666666677777777776666665432 11 1122 245666
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC---------CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036165 492 MVDLLGRAGRLAEAYEMIKTMS---------TEPDLFV-WGALLGACKNHGNIELAEIAAKHLSE 546 (566)
Q Consensus 492 l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (566)
|...|...|++++|..+++++. ..|+... ...+..++...|.+++|+.+++++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777766654 1233322 33444556677777777777777765
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.88 E-value=1.6e-05 Score=61.05 Aligned_cols=91 Identities=9% Similarity=0.046 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-------hhHH
Q 036165 417 VTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR-------TEHY 489 (566)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-------~~~~ 489 (566)
..|..+...+...|++++|.+.|++..+..+.+...+..+..++...|++++|++.++++.+. .|+ ...+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY---TSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCccHHHHHHHHH
Confidence 345555666666666666666666666655556666666666666666666666666666532 333 3334
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 036165 490 ACMVDLLGRAGRLAEAYEMIK 510 (566)
Q Consensus 490 ~~l~~~~~~~g~~~~A~~~~~ 510 (566)
..+..++...|++++|...++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHH
Confidence 444444555554444444433
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00011 Score=59.63 Aligned_cols=60 Identities=12% Similarity=-0.032 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhc-------CCCCHHHH----HHHHHHHhccCChHHHHHHHHHhH
Q 036165 418 TWNSMIFGCANHGYCDEAIELFNQMEER-------KKLDHLSF----TAVLTACCHVGLVELGQRLFNMMQ 477 (566)
Q Consensus 418 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~ 477 (566)
.|..+..++...|++++|+..+++..+. .+.+...| .....++...|++++|+..|++..
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444444444445555554444444443 33333344 444444444444444444444443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0013 Score=66.70 Aligned_cols=134 Identities=10% Similarity=-0.014 Sum_probs=117.7
Q ss_pred cCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCC----------hHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 036165 429 HGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGL----------VELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR 498 (566)
Q Consensus 429 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 498 (566)
....++|++.++++....+.+...|+.-..++...|+ ++++.+.++.+.+. .+-+..+|..-..++.+
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 3446788999999999888888889988888888877 99999999999986 34567889998999999
Q ss_pred cC--CHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhCCCCchHHHHHHHHHhh
Q 036165 499 AG--RLAEAYEMIKTMS--TEPDLFVWGALLGACKNHG-NIELAEIAAKHLSELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 499 ~g--~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 564 (566)
.| +++++++.++++. ...+..+|+.-...+.+.| .++++.+.++++++.+|.|..++...+.++..
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHh
Confidence 99 7799999999998 4568899999888889999 89999999999999999999999999998865
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00012 Score=55.00 Aligned_cols=62 Identities=16% Similarity=0.109 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036165 449 DHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512 (566)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 512 (566)
+...+..+..++...|++++|+..|+++.+. . +.+...|..+..+|.+.|++++|.+.+++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET-D-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444555555555555555555555555543 1 123344555555555555555555555543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00018 Score=55.51 Aligned_cols=93 Identities=9% Similarity=-0.057 Sum_probs=62.5
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036165 468 LGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLS 545 (566)
Q Consensus 468 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 545 (566)
.++..++++.+. .+.+...+..+..+|.+.|++++|...++++. .+.+...|..+..++...|++++|...+++++
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456667766643 23356677777788888888888888887766 33456677777778888888888888888888
Q ss_pred hhCCC--CchHHHHHHHHH
Q 036165 546 ELEPE--SAANNMLLTDLY 562 (566)
Q Consensus 546 ~~~p~--~~~~~~~l~~~~ 562 (566)
+..|+ +......+...+
T Consensus 81 ~~~~~~~~~~~~~~l~~~l 99 (115)
T 2kat_A 81 AAAQSRGDQQVVKELQVFL 99 (115)
T ss_dssp HHHHHHTCHHHHHHHHHHH
T ss_pred HhccccccHHHHHHHHHHH
Confidence 77663 333344444433
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00023 Score=53.14 Aligned_cols=62 Identities=18% Similarity=0.148 Sum_probs=32.4
Q ss_pred HHHHhcCCHHHHHHHHHhcC--CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHH
Q 036165 494 DLLGRAGRLAEAYEMIKTMS--TEPDLF-VWGALLGACKNHGNIELAEIAAKHLSELEPESAANN 555 (566)
Q Consensus 494 ~~~~~~g~~~~A~~~~~~~~--~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 555 (566)
..+.+.|++++|...++++. .+.+.. .|..+..+|...|++++|+..++++++.+|+++..+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 34445555555555555544 122334 455555555555555555555555555555555544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00013 Score=72.21 Aligned_cols=120 Identities=13% Similarity=0.024 Sum_probs=85.4
Q ss_pred HHHhcCCHHHHHHHHHhcCC-------CC----hhHHHHHHHHHHhcCChHHHHHHHHHhhhc----CCCCH----HHHH
Q 036165 394 MYAKCGFISEARTLFDKMSE-------RN----TVTWNSMIFGCANHGYCDEAIELFNQMEER----KKLDH----LSFT 454 (566)
Q Consensus 394 ~~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~----~~~~ 454 (566)
.+...|++++|+.++++..+ ++ ..+++.|..+|...|++++|+.++++..+. ..++. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34566777777776665442 22 346777888888888888888888876543 33332 3688
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhc--CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 455 AVLTACCHVGLVELGQRLFNMMQEKY--KIMPR----TEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 455 ~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
.|...|...|++++|+.+++++.+.. -+.|+ ..+.+.+..++...|++++|..++.++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999988876421 12222 3455677788889999999999998875
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00034 Score=67.96 Aligned_cols=99 Identities=11% Similarity=-0.040 Sum_probs=70.0
Q ss_pred ccCChHHHHHHHHHhHHhc--CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhcC---------CCCC-HHHHHHHH
Q 036165 462 HVGLVELGQRLFNMMQEKY--KIMPR----TEHYACMVDLLGRAGRLAEAYEMIKTMS---------TEPD-LFVWGALL 525 (566)
Q Consensus 462 ~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~-~~~~~~l~ 525 (566)
..|++++|+.++++..+.. -+.|+ ..+++.|+.+|...|++++|..+++++. ..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3467777777777665431 12222 3567778888888888888888777665 2344 34578888
Q ss_pred HHHHhcCCHHHHHHHHHHHhh-----hCCCCchHHHHHHH
Q 036165 526 GACKNHGNIELAEIAAKHLSE-----LEPESAANNMLLTD 560 (566)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~l~~ 560 (566)
..|...|++++|+.+++++++ .+|++|.+-....+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~ 429 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQE 429 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 999999999999999999985 67888877665544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00089 Score=48.70 Aligned_cols=60 Identities=18% Similarity=0.213 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 036165 419 WNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478 (566)
Q Consensus 419 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 478 (566)
+..+...+...|++++|...|++..+..+.+...+..+..++...|++++|...++++.+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 344444444555555555555555444444444455555555555555555555555544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00033 Score=52.50 Aligned_cols=65 Identities=11% Similarity=0.048 Sum_probs=49.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHh
Q 036165 415 NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEK 479 (566)
Q Consensus 415 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 479 (566)
+...+..+...|...|++++|+..|++..+..+.+...|..+..++...|++++|++.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45567777777777888888888888877776667777788888888888888888888777654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00099 Score=64.79 Aligned_cols=101 Identities=12% Similarity=-0.077 Sum_probs=67.0
Q ss_pred HhccCChHHHHHHHHHhHHhc--CCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhcC---------CCCC-HHHHHH
Q 036165 460 CCHVGLVELGQRLFNMMQEKY--KIMPR----TEHYACMVDLLGRAGRLAEAYEMIKTMS---------TEPD-LFVWGA 523 (566)
Q Consensus 460 ~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~-~~~~~~ 523 (566)
+...|++++|+.++++..+.. -+.|+ ..+++.|+.+|...|++++|+.+++++. ..|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 445567777777776665431 11222 3456677777777777777777776654 1233 345778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhh-----hCCCCchHHHHHHH
Q 036165 524 LLGACKNHGNIELAEIAAKHLSE-----LEPESAANNMLLTD 560 (566)
Q Consensus 524 l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~l~~ 560 (566)
|...|...|++++|+.+++++++ .+|++|.+...+.+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~ 418 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILL 418 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 88888888999999988888885 57888776665443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00098 Score=50.26 Aligned_cols=75 Identities=19% Similarity=0.119 Sum_probs=57.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHH
Q 036165 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMST---------EPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANN 555 (566)
Q Consensus 485 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 555 (566)
+..-+..++..+.+.|+++.|..+++.+.. .+...++..+..++.+.|++++|...++++++..|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 444555677777777777777777776551 13466788888999999999999999999999999998887
Q ss_pred HHHH
Q 036165 556 MLLT 559 (566)
Q Consensus 556 ~~l~ 559 (566)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 7665
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00028 Score=57.06 Aligned_cols=91 Identities=11% Similarity=0.040 Sum_probs=65.5
Q ss_pred hcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCh----------HHHHHHHHHhHHhcCCCC-ChhHHHHHHHHH
Q 036165 428 NHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLV----------ELGQRLFNMMQEKYKIMP-RTEHYACMVDLL 496 (566)
Q Consensus 428 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 496 (566)
+.+.+++|.+.+++..+..+.+...|..+..++...+++ ++|+..|+++++. .| +...|..+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---dP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---CcCcHHHHHHHHHHH
Confidence 445677788888877777777777777777777776654 5888888888764 34 456778888888
Q ss_pred HhcC-----------CHHHHHHHHHhcC-CCCCHHHH
Q 036165 497 GRAG-----------RLAEAYEMIKTMS-TEPDLFVW 521 (566)
Q Consensus 497 ~~~g-----------~~~~A~~~~~~~~-~~p~~~~~ 521 (566)
...| ++++|.+.|+++. ..|+...|
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 7764 7888888888877 55664433
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0014 Score=48.01 Aligned_cols=71 Identities=7% Similarity=-0.133 Sum_probs=55.4
Q ss_pred CCChhHHHHHHHHHHhcCC---HHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCch
Q 036165 483 MPRTEHYACMVDLLGRAGR---LAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAA 553 (566)
Q Consensus 483 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 553 (566)
+.++..+..+..++...++ .++|..++++.. .+.++..+..+...+.+.|++++|+..|+++++.+|+++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 4567777778877765544 688888888877 4456777888888888999999999999999998888544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0016 Score=52.07 Aligned_cols=94 Identities=11% Similarity=-0.060 Sum_probs=66.3
Q ss_pred hHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhcC-CC-C--CHHHHHHHHHHHHhcCCHHHHH
Q 036165 466 VELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG---RLAEAYEMIKTMS-TE-P--DLFVWGALLGACKNHGNIELAE 538 (566)
Q Consensus 466 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~-p--~~~~~~~l~~~~~~~g~~~~A~ 538 (566)
...+.+-|.+.... + .++..+...+..++.+.+ +.+++..++++.. .. | ....+..+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34455555555543 3 367777777777888777 5557777777765 22 4 3455667777889999999999
Q ss_pred HHHHHHhhhCCCCchHHHHHHHH
Q 036165 539 IAAKHLSELEPESAANNMLLTDL 561 (566)
Q Consensus 539 ~~~~~~~~~~p~~~~~~~~l~~~ 561 (566)
+.++++++.+|+|..+.....-+
T Consensus 92 ~y~~~lL~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHH
Confidence 99999999999998877665433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0053 Score=48.99 Aligned_cols=110 Identities=9% Similarity=-0.059 Sum_probs=60.0
Q ss_pred CChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHH
Q 036165 158 GYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSK----CGSVEKA 233 (566)
Q Consensus 158 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~A 233 (566)
+++++|++.|++..+.| .|+ .. +...+...+..+.|.+.+++..+.| +...+..|..+|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMF--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35566677777666665 122 22 4445555555666666666666654 34455555555555 5566666
Q ss_pred HHHHHhcCC-CChhhHHHHHHHHHH----cCChhHHHHHHHHhhhCC
Q 036165 234 KKVFDEMVE-KDIVAMNAMVSGYVQ----RGLATEALNLVEEIGTPR 275 (566)
Q Consensus 234 ~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 275 (566)
.+.|++..+ .+...+..|...|.. .++.++|...|++..+.|
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 666655532 344455555555555 455555555555554443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00049 Score=51.25 Aligned_cols=85 Identities=11% Similarity=-0.017 Sum_probs=40.6
Q ss_pred HHHhccCChHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCH
Q 036165 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTE-HYACMVDLLGRAGRLAEAYEMIKTMS-TEPD-LFVWGALLGACKNHGNI 534 (566)
Q Consensus 458 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~ 534 (566)
..+...|++++|...++++.+. .+.+.. .+..+..+|.+.|++++|.+.|+++. ..|+ ...+.. +.+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 3444555555555555555543 122334 45555555555555555555555544 2222 222211 344
Q ss_pred HHHHHHHHHHhhhCCCCc
Q 036165 535 ELAEIAAKHLSELEPESA 552 (566)
Q Consensus 535 ~~A~~~~~~~~~~~p~~~ 552 (566)
.++...++++.+.+|+++
T Consensus 78 ~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 78 MDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHhccCcccc
Confidence 555555555555555443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.024 Score=60.60 Aligned_cols=155 Identities=12% Similarity=0.045 Sum_probs=94.1
Q ss_pred HHHHhcCChHHHHH-HHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 036165 152 GAYARRGYHQEAVT-VFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSV 230 (566)
Q Consensus 152 ~~~~~~g~~~~A~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 230 (566)
......+++++|.+ ++..+ + +......++..+.+.|..+.|.++.+. .. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i-----~-~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV-----E-GKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC-----C-CHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC-----C-chHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCH
Confidence 34455677777766 44221 1 012235666666677777777665421 11 113345667888
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036165 231 EKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKG 310 (566)
Q Consensus 231 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 310 (566)
+.|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++.+.....|
T Consensus 669 ~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 669 TLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 8888887766 3567888888888888888888888888754 4445555555677776665555544433
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 036165 311 VEPDVVSWTSVISGLVHNFCNDEAFDTFKEM 341 (566)
Q Consensus 311 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 341 (566)
-++....+|.+.|++++|++++.++
T Consensus 738 ------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 738 ------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp ------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred ------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1233344455566666666665543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.018 Score=44.21 Aligned_cols=96 Identities=10% Similarity=-0.090 Sum_probs=69.8
Q ss_pred CChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH---HHHHHHhcCCC--C--CHHHHHHHHHHHHhcCCHHH
Q 036165 464 GLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAE---AYEMIKTMSTE--P--DLFVWGALLGACKNHGNIEL 536 (566)
Q Consensus 464 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~--p--~~~~~~~l~~~~~~~g~~~~ 536 (566)
.....+.+-+...... |. ++..+-..+..++.+..+..+ +..+++..... | .......|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3445555556655554 43 677777788888888887766 78888877633 3 23344566678999999999
Q ss_pred HHHHHHHHhhhCCCCchHHHHHHHH
Q 036165 537 AEIAAKHLSELEPESAANNMLLTDL 561 (566)
Q Consensus 537 A~~~~~~~~~~~p~~~~~~~~l~~~ 561 (566)
|.+.++.+++.+|+|..+..+..-|
T Consensus 93 A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999998887765544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.12 Score=55.21 Aligned_cols=131 Identities=13% Similarity=0.103 Sum_probs=76.2
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChH
Q 036165 354 SSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCD 433 (566)
Q Consensus 354 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 433 (566)
..++..+.+.|..+.|.++.+. .. .-.......|++++|.++.+.+ .+...|..+...+.+.++++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHH
Confidence 4555555566666665544321 11 1123445678888888887666 35567888888888888888
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 434 EAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 434 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
.|++.|.++.. |..+...+...|+.+...++.+.+... |. ++.-..+|.+.|++++|.+++.++.
T Consensus 699 ~A~~~y~~~~d--------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 699 LAIEAFTNAHD--------LESLFLLHSSFNNKEGLVTLAKDAETT-GK------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHHHTC--------HHHHHHHHHHTTCHHHHHHHHHHHHHT-TC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHccC--------hhhhHHHHHHcCCHHHHHHHHHHHHHc-Cc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 88888887754 334444444455655555554444433 21 2333344555566666666655543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.2 Score=41.05 Aligned_cols=129 Identities=16% Similarity=0.177 Sum_probs=89.8
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHH
Q 036165 393 DMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRL 472 (566)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 472 (566)
+...+.|+++.|.++.+.+ .+...|..|......+|+++-|.+.|.+... +..+.-.|...|+.+...++
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHHH
Confidence 4456788888888887776 4677899999988899999999988888764 44455556667777777666
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036165 473 FNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHL 544 (566)
Q Consensus 473 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 544 (566)
-+....+ |- ++.-...+.-.|+++++.+++.+...-|.. .......|-.+.|.++.+.+
T Consensus 83 a~iA~~~-g~------~n~af~~~l~lGdv~~~i~lL~~~~r~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTR-ED------FGSMLLNTFYNNSTKERSSIFAEGGSLPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHT-TC------HHHHHHHHHHHTCHHHHHHHHHHTTCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHC-cc------HHHHHHHHHHcCCHHHHHHHHHHCCChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 6665544 31 455566677889999999998877522211 11123467778888887665
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.017 Score=53.75 Aligned_cols=74 Identities=11% Similarity=-0.029 Sum_probs=60.8
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCCHHHHH
Q 036165 446 KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPDLFVWG 522 (566)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~ 522 (566)
.+.+..+|..+...+...|++++|...++++... . |+...|..+...+.-.|++++|.+.++++. ..|...+|.
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-n--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~ 347 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL-E--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHH
Confidence 4667888888887777789999999999999977 3 777777788888999999999999998876 567776654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0051 Score=59.68 Aligned_cols=85 Identities=11% Similarity=0.012 Sum_probs=63.1
Q ss_pred cCChHHHHHHHHHhhhc----CCCCH----HHHHHHHHHHhccCChHHHHHHHHHhHHh----cC-CCCC-hhHHHHHHH
Q 036165 429 HGYCDEAIELFNQMEER----KKLDH----LSFTAVLTACCHVGLVELGQRLFNMMQEK----YK-IMPR-TEHYACMVD 494 (566)
Q Consensus 429 ~~~~~~A~~~~~~~~~~----~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~p~-~~~~~~l~~ 494 (566)
.|++++|+.++++..+. ..|+. .+++.|..+|...|++++|+.+++++.+. +| ..|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46777777777776553 22322 46888889999999999999988887643 12 1233 367889999
Q ss_pred HHHhcCCHHHHHHHHHhcC
Q 036165 495 LLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 495 ~~~~~g~~~~A~~~~~~~~ 513 (566)
.|...|++++|..+++++.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 9999999999999998875
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0013 Score=62.51 Aligned_cols=145 Identities=10% Similarity=0.058 Sum_probs=97.0
Q ss_pred chHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcc
Q 036165 112 LTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGH 191 (566)
Q Consensus 112 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 191 (566)
.+.+|..|..+....+++.+|++.|-+. .|+..|..+|....+.|.+++-+..+.-.++..-.| ..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 4556677777777777777776555332 466667788888888888888888776555543333 333567777888
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC------------------------CCChhh
Q 036165 192 LSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV------------------------EKDIVA 247 (566)
Q Consensus 192 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------------------~~~~~~ 247 (566)
.+++.+-++++ -.|+..-...+.+-|...|.++.|.-+|..+. ..++.|
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 87766544433 24666566667777888888888877777661 126678
Q ss_pred HHHHHHHHHHcCChhHHHHH
Q 036165 248 MNAMVSGYVQRGLATEALNL 267 (566)
Q Consensus 248 ~~~li~~~~~~g~~~~a~~~ 267 (566)
|..+-.+|...+.+.-|.-.
T Consensus 202 WKeV~~ACvd~~EfrLAqic 221 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMC 221 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHH
T ss_pred HHHHHHHHhCchHHHHHHHh
Confidence 88888888888777665443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0089 Score=58.04 Aligned_cols=85 Identities=12% Similarity=0.061 Sum_probs=48.3
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-------CC----hhHHHHHHHHHHhcCChHHHHHHHHHhhhc----CCCCH----HHH
Q 036165 393 DMYAKCGFISEARTLFDKMSE-------RN----TVTWNSMIFGCANHGYCDEAIELFNQMEER----KKLDH----LSF 453 (566)
Q Consensus 393 ~~~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~----~~~ 453 (566)
..+.+.|++++|+.++++..+ ++ ..+++.+..+|...|++++|+.+++++... ..++. .++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 334456677777666655432 11 235666666666667777766666665432 22221 246
Q ss_pred HHHHHHHhccCChHHHHHHHHHhH
Q 036165 454 TAVLTACCHVGLVELGQRLFNMMQ 477 (566)
Q Consensus 454 ~~l~~~~~~~g~~~~a~~~~~~~~ 477 (566)
+.|...|...|++++|+.+++++.
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 666666666666666666666554
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0036 Score=59.64 Aligned_cols=184 Identities=13% Similarity=0.057 Sum_probs=104.2
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHHHH
Q 036165 75 HLSPAAYSERIEIYIRDRALQSGKILHAQLIVSGLARLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAY 154 (566)
Q Consensus 75 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 154 (566)
.-+|..|..++..+.+.|.+++-...+.-..+. ..++.+=+.|+-+|++.++..+..+++.. ||..-...+..-|
T Consensus 80 A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~~---~N~A~iq~VGDrc 154 (624)
T 3lvg_A 80 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRC 154 (624)
T ss_dssp CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTSC---CSSSCTHHHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHcC---CCcccHHHHHHHH
Confidence 355678999999999999999888877766554 35566667899999998886654433221 3333333444444
Q ss_pred HhcCChHHHHHHHHHhHHCC--------------------CCCCcchHHHHHHHH-------------------------
Q 036165 155 ARRGYHQEAVTVFHEMHIQG--------------------LKQNIFVIPSVLKAC------------------------- 189 (566)
Q Consensus 155 ~~~g~~~~A~~~~~~m~~~g--------------------~~p~~~~~~~ll~~~------------------------- 189 (566)
...|.++.|.-+|..+.... ---+..||..+-.+|
T Consensus 155 f~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~e 234 (624)
T 3lvg_A 155 YDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEE 234 (624)
T ss_dssp HHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSG
T ss_pred HHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHH
Confidence 44444444444443321100 011333444444444
Q ss_pred -----cccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----------ChhhHHHHHH
Q 036165 190 -----GHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK-----------DIVAMNAMVS 253 (566)
Q Consensus 190 -----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~ 253 (566)
-..|.+++-..+++.-+.. -.....+++-|.-.|++- ++++..+.++..-.+ ....|..++-
T Consensus 235 lv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~Elvf 312 (624)
T 3lvg_A 235 LINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 312 (624)
T ss_dssp GGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHH
Confidence 4455555555555544321 123455667666666664 455555555544221 3345777777
Q ss_pred HHHHcCChhHHH
Q 036165 254 GYVQRGLATEAL 265 (566)
Q Consensus 254 ~~~~~g~~~~a~ 265 (566)
.|++-.+++.|.
T Consensus 313 LY~~ydE~DnA~ 324 (624)
T 3lvg_A 313 LYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHTCHHHHH
T ss_pred HHhcchhHHHHH
Confidence 777777777654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.2 Score=38.47 Aligned_cols=85 Identities=14% Similarity=-0.006 Sum_probs=63.2
Q ss_pred hcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHh
Q 036165 397 KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476 (566)
Q Consensus 397 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 476 (566)
.+|++......+-.+.. +.......+..+..+|.-++-.+++..+....+|++.....+..+|.+.|+..++.+++.++
T Consensus 73 ~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 45666666666655543 33445666778888888888888888876667788888888888999999999999988888
Q ss_pred HHhcCCC
Q 036165 477 QEKYKIM 483 (566)
Q Consensus 477 ~~~~~~~ 483 (566)
.++ |++
T Consensus 152 C~k-G~k 157 (172)
T 1wy6_A 152 CKK-GEK 157 (172)
T ss_dssp HHT-TCH
T ss_pred HHh-hhH
Confidence 887 753
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.11 Score=42.47 Aligned_cols=103 Identities=17% Similarity=0.229 Sum_probs=71.7
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHH
Q 036165 222 DMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSK 301 (566)
Q Consensus 222 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 301 (566)
......|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.+....
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445678888888887766 4567788888888888888888888887754 4455556666777777666
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 036165 302 LFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEM 341 (566)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 341 (566)
+-+.....| -++....++.-.|+++++.++|.+.
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 655555443 2455556667778888888877543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.084 Score=38.37 Aligned_cols=63 Identities=6% Similarity=-0.037 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHhcCC---hHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 036165 416 TVTWNSMIFGCANHGY---CDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478 (566)
Q Consensus 416 ~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 478 (566)
...+..+..++...++ .++|..++++..+..+.+......+...+...|++++|+..|+++.+
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444444444433322 46666666666665555566666666666666666666666666654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.074 Score=42.43 Aligned_cols=84 Identities=11% Similarity=0.019 Sum_probs=66.1
Q ss_pred hHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccC---ChHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCCHHHHH
Q 036165 432 CDEAIELFNQMEERKKLDHLSFTAVLTACCHVG---LVELGQRLFNMMQEKYKIMP--RTEHYACMVDLLGRAGRLAEAY 506 (566)
Q Consensus 432 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 506 (566)
...+.+-|.+..+..+++..+...+..++++++ +.++++.+++...+. . .| ..+.+-.|.-+|.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 445666677666666788889999999999988 677999999999886 3 24 3566667888899999999999
Q ss_pred HHHHhcC-CCCC
Q 036165 507 EMIKTMS-TEPD 517 (566)
Q Consensus 507 ~~~~~~~-~~p~ 517 (566)
+.++.+. .+|+
T Consensus 92 ~y~~~lL~ieP~ 103 (152)
T 1pc2_A 92 KYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHhcCCC
Confidence 9999987 5564
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.029 Score=50.02 Aligned_cols=59 Identities=14% Similarity=0.097 Sum_probs=28.7
Q ss_pred HHHHHHHHHhc-----cCChHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhc-CCHHHHHHHHHhcC
Q 036165 452 SFTAVLTACCH-----VGLVELGQRLFNMMQEKYKIMP--RTEHYACMVDLLGRA-GRLAEAYEMIKTMS 513 (566)
Q Consensus 452 ~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~ 513 (566)
.|..+...|.. -|+.++|.+.|++..+. .| +..++..+.+.+++. |+.++|.+.++++.
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L---nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL 267 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY---CSAHDPDHHITYADALCIPLNNRAGFDEALDRAL 267 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH---CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 45555555544 25555555555555543 23 234444445555442 55555555555544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.60 E-value=0.56 Score=36.08 Aligned_cols=62 Identities=16% Similarity=0.141 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 036165 249 NAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV 311 (566)
Q Consensus 249 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 311 (566)
+..+..+..+|+-++-.+++..+.. +.+|++.....+..+|.+.|+..++.+++.+..+.|+
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3344455555555555555555332 2244555555555555555555555555555555543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.48 Score=42.33 Aligned_cols=84 Identities=14% Similarity=0.090 Sum_probs=68.4
Q ss_pred ChHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhc-----CCHHHHHHHHHhcC-CCC--CHHHHHHHHHHHHh-cC
Q 036165 465 LVELGQRLFNMMQEKYKIMPR---TEHYACMVDLLGRA-----GRLAEAYEMIKTMS-TEP--DLFVWGALLGACKN-HG 532 (566)
Q Consensus 465 ~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~-~~p--~~~~~~~l~~~~~~-~g 532 (566)
....|...++++.+. .|+ ...|..|+..|.+. |+.++|.+.|++.. ..| +..++..+...+++ .|
T Consensus 178 ~l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 178 TVHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred hHHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 346677777777754 666 46789999999994 99999999999988 556 37888888888877 49
Q ss_pred CHHHHHHHHHHHhhhCCCC
Q 036165 533 NIELAEIAAKHLSELEPES 551 (566)
Q Consensus 533 ~~~~A~~~~~~~~~~~p~~ 551 (566)
+.++|.+.+++++...|..
T Consensus 255 d~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPES 273 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGG
T ss_pred CHHHHHHHHHHHHcCCCCC
Confidence 9999999999999988764
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.42 E-value=0.19 Score=39.50 Aligned_cols=97 Identities=10% Similarity=0.104 Sum_probs=43.8
Q ss_pred CChhHHHHHHHHHHhcCCh------HHHHHHHHHhhhcCCCCHHH-HHHHHH------HHhccCChHHHHHHHHHhHHhc
Q 036165 414 RNTVTWNSMIFGCANHGYC------DEAIELFNQMEERKKLDHLS-FTAVLT------ACCHVGLVELGQRLFNMMQEKY 480 (566)
Q Consensus 414 ~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~-~~~l~~------~~~~~g~~~~a~~~~~~~~~~~ 480 (566)
.|..+|-..+....+.|++ ++..++|++.....+|+... |...+. .+...++.++|.++|+.++..
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~- 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN- 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-
Confidence 3455555555555555665 55566666666555554210 000000 112234555555555555433
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036165 481 KIMPRTEHYACMVDLLGRAGRLAEAYEMIKTM 512 (566)
Q Consensus 481 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 512 (566)
.-.- ..+|-.....-.+.|+++.|.+++.+.
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2121 334444444444444444444444443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.30 E-value=0.15 Score=37.99 Aligned_cols=62 Identities=6% Similarity=-0.007 Sum_probs=33.9
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcC-----CCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYK-----IMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 452 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
-+..+...+.+.|+++.|...++.+.+... -.+...++..|..+|.+.|++++|...++++.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 344555555555666666665555554311 01234455666666666666666666666655
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.19 Score=40.40 Aligned_cols=132 Identities=12% Similarity=0.039 Sum_probs=71.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhc--CCCCH-------HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChh-HHH
Q 036165 421 SMIFGCANHGYCDEAIELFNQMEER--KKLDH-------LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTE-HYA 490 (566)
Q Consensus 421 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~ 490 (566)
.-+..+...|.++.|+-+...+... ..++. .++..+..++...|++..|...|+++......-+... ...
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 3355666777777777776665554 23331 2556666777777777777777777644322211111 111
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHh
Q 036165 491 CMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563 (566)
Q Consensus 491 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 563 (566)
.+. ....... ......+...-.-+..+|.+.|++++|+..++.+-. .-..+.....|+++|.
T Consensus 105 ~~~----~~ss~p~------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 105 STG----NSASTPQ------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLYK 166 (167)
T ss_dssp ----------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHCC
T ss_pred ccc----ccCCCcc------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHhc
Confidence 110 0000000 000112334444466788899999999998877542 1236778888888874
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=94.70 E-value=2.4 Score=38.47 Aligned_cols=83 Identities=12% Similarity=0.217 Sum_probs=53.3
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhc---CChHHHHHHHHHhhhcCCCCHHHHHHHHHH
Q 036165 383 GDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANH---GYCDEAIELFNQMEERKKLDHLSFTAVLTA 459 (566)
Q Consensus 383 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 459 (566)
.++.....+...|.+.|++.+|+..|-.....+...+..++.-+... |...++--..-+. + --
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~Ra-------------V-L~ 197 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRL-------------V-FN 197 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH-------------H-HH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHH-------------H-HH
Confidence 47888999999999999999999988633323455565555544444 4444432222221 1 12
Q ss_pred HhccCChHHHHHHHHHhHHh
Q 036165 460 CCHVGLVELGQRLFNMMQEK 479 (566)
Q Consensus 460 ~~~~g~~~~a~~~~~~~~~~ 479 (566)
|...|+...|..+++...++
T Consensus 198 yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 198 YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHTTBHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHH
Confidence 45678888888888877644
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.64 E-value=0.54 Score=37.02 Aligned_cols=109 Identities=9% Similarity=0.003 Sum_probs=73.3
Q ss_pred CCCHHHHHHHHHHHhccCCh------HHHHHHHHHhHHhcCCCCChh-HHHHHHH------HHHhcCCHHHHHHHHHhcC
Q 036165 447 KLDHLSFTAVLTACCHVGLV------ELGQRLFNMMQEKYKIMPRTE-HYACMVD------LLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~p~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~ 513 (566)
+.|..+|-..+....+.|+. +...++|+++... ++|+.. .|...+. .+...++.++|.++|+.+.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45667777777777777777 7788888888774 666531 1222221 1234478888888888775
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHH
Q 036165 514 --TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNML 557 (566)
Q Consensus 514 --~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 557 (566)
-+.-...|.....--.+.|+...|.+++.+++.+.|.......+
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~ 133 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEI 133 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHH
Confidence 22226667777777778888888888888888888876555443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.53 E-value=3.7 Score=39.82 Aligned_cols=95 Identities=13% Similarity=0.048 Sum_probs=68.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhc-CCCCH-----HHHHHHHHHHhccCChHHHHHHHHHhHHhc-CCCCC----hh
Q 036165 419 WNSMIFGCANHGYCDEAIELFNQMEER-KKLDH-----LSFTAVLTACCHVGLVELGQRLFNMMQEKY-KIMPR----TE 487 (566)
Q Consensus 419 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~p~----~~ 487 (566)
...|...|...|++.+|.+++..+... ...+. ..+...++.|...+++..|..+++++.... ...++ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 355777888899999999999988765 32222 357777888999999999999998875321 12222 24
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 488 HYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 488 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
.+...+..+...+++.+|.+.|.++.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 56677888888999999988777654
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.33 E-value=0.84 Score=35.61 Aligned_cols=79 Identities=11% Similarity=0.005 Sum_probs=56.3
Q ss_pred CCChhHHHHHHHHHHhcCCHH---HHHHHHHhcC-CCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHH
Q 036165 483 MPRTEHYACMVDLLGRAGRLA---EAYEMIKTMS-TEP-D-LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNM 556 (566)
Q Consensus 483 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 556 (566)
.|+..+--.+.+++.+..+.+ ++..+++... ..| + .....-|.-++.+.|++++|.+..+.+++.+|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 567777777778888877654 4566666654 233 2 334455567788999999999999999999999988766
Q ss_pred HHHHH
Q 036165 557 LLTDL 561 (566)
Q Consensus 557 ~l~~~ 561 (566)
+..-|
T Consensus 116 Lk~~I 120 (144)
T 1y8m_A 116 LKSMV 120 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65433
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.28 E-value=2.4 Score=41.14 Aligned_cols=161 Identities=11% Similarity=0.061 Sum_probs=95.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----C----ChhHHHHHHHHHHhcCChHHHHHHHHHhhhc---CCCCH----
Q 036165 387 VRSALVDMYAKCGFISEARTLFDKMSE-----R----NTVTWNSMIFGCANHGYCDEAIELFNQMEER---KKLDH---- 450 (566)
Q Consensus 387 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~---- 450 (566)
....|...|...|++.+|..++..+.. . -+..+..-+..|...+++..|..+++++... ..+++
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 345678888888899998888887652 1 1235566677888889999998888887543 23332
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHH----HHHH--HhcCCH-HHHH-HHHHhcCCCCCHHHHH
Q 036165 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACM----VDLL--GRAGRL-AEAY-EMIKTMSTEPDLFVWG 522 (566)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----~~~~--~~~g~~-~~A~-~~~~~~~~~p~~~~~~ 522 (566)
..+...+..+...++|.+|-+.|.++.+.+....+...+... +.+. ...+.. .... .++.. ..-++...+.
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~-~~~~~l~~~~ 297 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQND-NNLKKLESQE 297 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHH-SSCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhc-ccccccHHHH
Confidence 246667777788888988888887776543333333222211 1111 111211 1111 11211 1125667788
Q ss_pred HHHHHHHhc--CCHHHHHHHHHHHhhhC
Q 036165 523 ALLGACKNH--GNIELAEIAAKHLSELE 548 (566)
Q Consensus 523 ~l~~~~~~~--g~~~~A~~~~~~~~~~~ 548 (566)
.++.+|... .+++...+.++..+..+
T Consensus 298 ~L~k~f~~~~L~~~~~~~~~~~~~L~~~ 325 (445)
T 4b4t_P 298 SLVKLFTTNELMRWPIVQKTYEPVLNED 325 (445)
T ss_dssp HHHHHHHHCCSSSHHHHHHHTCSSTTTC
T ss_pred HHHHHHHhchHhhhHHHHHHHHHHhccc
Confidence 888888654 46777777776655443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.96 E-value=0.52 Score=36.24 Aligned_cols=79 Identities=11% Similarity=0.005 Sum_probs=55.7
Q ss_pred CCChhHHHHHHHHHHhcCCHH---HHHHHHHhcC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHH
Q 036165 483 MPRTEHYACMVDLLGRAGRLA---EAYEMIKTMS-TEP--DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNM 556 (566)
Q Consensus 483 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 556 (566)
.|++.+--.+..++.+..+.+ ++..++++.. ..| ....+--|.-++.+.|++++|.+..+.+++..|+|..+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 456666667777787777653 4566666554 234 2445566667888999999999999999999999988766
Q ss_pred HHHHH
Q 036165 557 LLTDL 561 (566)
Q Consensus 557 ~l~~~ 561 (566)
+..-|
T Consensus 117 Lk~~I 121 (134)
T 3o48_A 117 LKSMV 121 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.72 E-value=0.28 Score=37.60 Aligned_cols=86 Identities=10% Similarity=0.006 Sum_probs=62.5
Q ss_pred CChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHH---HHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCCHHH
Q 036165 430 GYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVEL---GQRLFNMMQEKYKIMP--RTEHYACMVDLLGRAGRLAE 504 (566)
Q Consensus 430 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~ 504 (566)
.....+.+-|.+......++..+-..+..++.++..... ++.+++.+... + .| .....-.|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 344556666666655566888888888889998887776 77888877654 2 23 23445567788999999999
Q ss_pred HHHHHHhcC-CCCC
Q 036165 505 AYEMIKTMS-TEPD 517 (566)
Q Consensus 505 A~~~~~~~~-~~p~ 517 (566)
|++.++.+. .+|+
T Consensus 93 A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCC
Confidence 999999887 4563
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=93.70 E-value=4.1 Score=37.27 Aligned_cols=126 Identities=13% Similarity=0.083 Sum_probs=68.5
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCchH-HHHHHHHHH----HHhC--CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036165 339 KEMLSQGFCPTSATISSILPACASAANMR-RGKEIHGCA----IVMG--VEGDLHVRSALVDMYAKCGFISEARTLFDKM 411 (566)
Q Consensus 339 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 411 (566)
+-..+.++++|......++..+.....-+ .-..+.+.+ .+.| ..-++.....+...|.+.+++.+|+..|-.-
T Consensus 83 evy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg 162 (336)
T 3lpz_A 83 DTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLG 162 (336)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhc
Confidence 33334455555555555555544333211 112222222 2233 3457888889999999999999999988533
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 036165 412 SERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478 (566)
Q Consensus 412 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 478 (566)
.++.+..+..++.-+...+...++--.+- ..++ -|...++...|..+++...+
T Consensus 163 ~~~s~~~~a~mL~ew~~~~~~~e~dlfia-------------RaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 163 TKESPEVLARMEYEWYKQDESHTAPLYCA-------------RAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp CTTHHHHHHHHHHHHHHTSCGGGHHHHHH-------------HHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhcCCccHHHHHH-------------HHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 33334566665555544443222221111 1122 35556788888887766654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=93.43 E-value=4.1 Score=38.45 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=11.5
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhc
Q 036165 422 MIFGCANHGYCDEAIELFNQMEER 445 (566)
Q Consensus 422 l~~~~~~~~~~~~A~~~~~~~~~~ 445 (566)
++..|...|++.+|.+++.++.+.
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~ 128 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRE 128 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH
Confidence 344444455555555544444443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.36 E-value=0.61 Score=37.51 Aligned_cols=128 Identities=8% Similarity=-0.086 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCh-------hHHHHHHHHHHhcCChHHHHHHHHHhhhc---CCCCH
Q 036165 386 HVRSALVDMYAKCGFISEARTLFDKMSE-----RNT-------VTWNSMIFGCANHGYCDEAIELFNQMEER---KKLDH 450 (566)
Q Consensus 386 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~ 450 (566)
..+..-+..+...|.++.|+-+.+.+.. +++ .++..+..++...+++..|...|++..+. ...+.
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3444557778889999999988876552 442 24566788899999999999999998655 22122
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-CCHHHHHHHHHH
Q 036165 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTE-PDLFVWGALLGA 527 (566)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~ 527 (566)
.+...+.. ...... ......+.+.--.+..+|.+.|++++|+.+++.++.+ .++.+-..|.+.
T Consensus 101 s~~~~~~~----~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakL 164 (167)
T 3ffl_A 101 KVRPSTGN----SASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANL 164 (167)
T ss_dssp ------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHH
T ss_pred Cccccccc----cCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHH
Confidence 12211100 000000 0022334555556889999999999999999998733 444444444443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.02 E-value=11 Score=40.05 Aligned_cols=270 Identities=13% Similarity=0.079 Sum_probs=152.9
Q ss_pred HHHHHcCChhHHHHHHHHhhhCC--CCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-------CCChhhHHHHHH
Q 036165 253 SGYVQRGLATEALNLVEEIGTPR--VKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV-------EPDVVSWTSVIS 323 (566)
Q Consensus 253 ~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~li~ 323 (566)
-+.+..|+.++++.+++.....+ -.+....-..+.-+....|..+++.+++.......- .+....-.++.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 35667888899988888766421 122233333444445555655567777766554321 011222333444
Q ss_pred HHHhcCC-hhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHH--HHhc
Q 036165 324 GLVHNFC-NDEAFDTFKEMLSQGFCPTS--ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDM--YAKC 398 (566)
Q Consensus 324 ~~~~~g~-~~~A~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~ 398 (566)
+++-.|. -+++.+.+..++...- +.. ..-..+...+...|+.+....++..+.+.. +..+...++.+ +.-.
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 4444443 3467777777765421 111 112233444567788888888888776532 23333334443 3466
Q ss_pred CCHHHHHHHHHhcCC-CChh-HHH---HHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 036165 399 GFISEARTLFDKMSE-RNTV-TWN---SMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLF 473 (566)
Q Consensus 399 g~~~~A~~~~~~~~~-~~~~-~~~---~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 473 (566)
|+.+.+..+.+.+.. .+.. -|. ++.-+|+..|+.....++++.+.+....+......+.-++...|+.+.+.+++
T Consensus 538 g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 538 GRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 787777777766553 3332 233 33456777888877777888888754334443444444555677777777777
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCCH-HHHHHHHHhcCCCCCHHHHHHHHHHH
Q 036165 474 NMMQEKYKIMPRTEHYACMVDLLGRAGRL-AEAYEMIKTMSTEPDLFVWGALLGAC 528 (566)
Q Consensus 474 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~l~~~~ 528 (566)
+.+.+. ..|....-..+.-+..-.|.. .+|.+.+..+...+|..+-..-+.++
T Consensus 618 ~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 618 QLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIAL 671 (963)
T ss_dssp TTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 766653 244444444444445555554 67888888888667766654444443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.01 E-value=11 Score=40.03 Aligned_cols=117 Identities=14% Similarity=-0.006 Sum_probs=50.0
Q ss_pred HhcCChHHHHHHHHHhhhcCCCCHHH--HHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH
Q 036165 427 ANHGYCDEAIELFNQMEERKKLDHLS--FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAE 504 (566)
Q Consensus 427 ~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 504 (566)
...|+.+.+..+.+.+.....|.... -..+.-+|+..|+.....+++..+.+. ...+..-...+.-++.-.|+.+.
T Consensus 535 l~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 535 INYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp HTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSS
T ss_pred hhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHH
Confidence 34555555555555555432211111 112333455666655555566666542 11222222222223333455544
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHH--HHhcCCH-HHHHHHHHHHh
Q 036165 505 AYEMIKTMSTEPDLFVWGALLGA--CKNHGNI-ELAEIAAKHLS 545 (566)
Q Consensus 505 A~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~-~~A~~~~~~~~ 545 (566)
+.++++.+....|+.+-.....+ ....|+. .+|+..+..+.
T Consensus 613 v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 613 VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 55555444323344333333322 2223322 45666666654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=91.80 E-value=3 Score=36.59 Aligned_cols=124 Identities=16% Similarity=0.100 Sum_probs=83.8
Q ss_pred HHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH
Q 036165 424 FGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLA 503 (566)
Q Consensus 424 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 503 (566)
....+.|+.++|++....-++..|.|...-..++..+|-.|+++.|.+-++...+. .|+...-..+..-+.++ +
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a---E 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA---A 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH---H
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH---H
Confidence 34567899999999999988888889999999999999999999999999988765 55543222222222221 1
Q ss_pred HH-HHHHHhcC----CCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHhhhCCCCch
Q 036165 504 EA-YEMIKTMS----TEPDLFVWGALLGA--CKNHGNIELAEIAAKHLSELEPESAA 553 (566)
Q Consensus 504 ~A-~~~~~~~~----~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~ 553 (566)
.. .++|..-. ......-...++.+ ....|+.++|..+-.++++.-|..+.
T Consensus 79 ~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 79 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 11 12232111 11223333444555 44679999999999999998876654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=91.10 E-value=10 Score=35.75 Aligned_cols=90 Identities=10% Similarity=-0.090 Sum_probs=49.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC----CC-----hhHHHHHHHHHHhcCChHHHHHHHHHhhhc---CCCCHHHHHH--
Q 036165 390 ALVDMYAKCGFISEARTLFDKMSE----RN-----TVTWNSMIFGCANHGYCDEAIELFNQMEER---KKLDHLSFTA-- 455 (566)
Q Consensus 390 ~l~~~~~~~g~~~~A~~~~~~~~~----~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~-- 455 (566)
.++..|...|++.+|.+++.++.+ .| ...+-.-+..|...++..++...+.+.... ..+++.....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 466677777777777666665542 11 123444455666777777777777666544 2233332211
Q ss_pred --HHHHHh-ccCChHHHHHHHHHhHHh
Q 036165 456 --VLTACC-HVGLVELGQRLFNMMQEK 479 (566)
Q Consensus 456 --l~~~~~-~~g~~~~a~~~~~~~~~~ 479 (566)
-+..+. ..++|..|...|-+..+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 122334 567777777766665543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=90.81 E-value=15 Score=37.14 Aligned_cols=336 Identities=9% Similarity=-0.027 Sum_probs=166.5
Q ss_pred HHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhhHHHHHHHHHHcC
Q 036165 182 IPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK--DIVAMNAMVSGYVQRG 259 (566)
Q Consensus 182 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g 259 (566)
|.....++ +.|+++.+..+...+....+.| ...|..|.... .....++...++++...- ....-+..+..+.+.+
T Consensus 10 ~~~a~~a~-~~~~~~~~~~l~~~l~~~pL~~-yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~ 86 (618)
T 1qsa_A 10 YAQIKQAW-DNRQMDVVEQMMPGLKDYPLYP-YLEYRQITDDL-MNQPAVTVTNFVRANPTLPPARTLQSRFVNELARRE 86 (618)
T ss_dssp HHHHHHHH-HTTCHHHHHHHSGGGTTSTTHH-HHHHHHHHHTG-GGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHH-HCCCHHHHHHHHHhhcCCCcHH-HHHHHHHHhCc-ccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCC
Confidence 44444443 4577776666655442221111 11222222111 222456666666665432 1122344556667777
Q ss_pred ChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 036165 260 LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFK 339 (566)
Q Consensus 260 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 339 (566)
++...+..+.. .+.+...-.....+....|+...|......+-..| ...+.....++..+.+.|....
T Consensus 87 ~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~------ 154 (618)
T 1qsa_A 87 DWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDP------ 154 (618)
T ss_dssp CHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCH------
T ss_pred CHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCH------
Confidence 77766664432 12333333345566666777666666555554333 2223334444444444333322
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcH-hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhH
Q 036165 340 EMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDL-HVRSALVDMYAKCGFISEARTLFDKMSERNTVT 418 (566)
Q Consensus 340 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 418 (566)
...+.. +......|+...|..+...+ .++. .....++..+.+ ...+....... .++...
T Consensus 155 ----------~~~~~R-~~~al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~~---p~~~~~~~~~~-~~~~~~ 214 (618)
T 1qsa_A 155 ----------LAYLER-IRLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLANN---PNTVLTFARTT-GATDFT 214 (618)
T ss_dssp ----------HHHHHH-HHHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHHC---GGGHHHHHHHS-CCCHHH
T ss_pred ----------HHHHHH-HHHHHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHhC---hHhHHHHHhcc-CCChhh
Confidence 111111 12233344444444433321 1222 222333333322 22233333222 222221
Q ss_pred ---HHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHH----HHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHH
Q 036165 419 ---WNSMIFGCANHGYCDEAIELFNQMEERKKLDHLS----FTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYAC 491 (566)
Q Consensus 419 ---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 491 (566)
+...+.-+.+ .+.+.|...+....+....+... ...+.......+...++...+...... ..+......
T Consensus 215 ~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~ 290 (618)
T 1qsa_A 215 RQMAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIER 290 (618)
T ss_dssp HHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHH
T ss_pred HHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHH
Confidence 1112223333 37899999998887653334332 333333444555355666677665433 344444555
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHH
Q 036165 492 MVDLLGRAGRLAEAYEMIKTMSTEP--DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTD 560 (566)
Q Consensus 492 l~~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 560 (566)
.+....+.|+++.|...|+.|...+ ......=+.+++...|+.++|..+|+++.+ + .++|-.|+.
T Consensus 291 ~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~lAa 357 (618)
T 1qsa_A 291 RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--Q--RGFYPMVAA 357 (618)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CChHHHHHH
Confidence 5555668899999999999998432 233334445677889999999999999875 2 356655543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.19 E-value=11 Score=34.31 Aligned_cols=167 Identities=7% Similarity=0.050 Sum_probs=98.8
Q ss_pred HHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHH----HHHhHHCCCCCCcchHHHHHHHHc
Q 036165 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTV----FHEMHIQGLKQNIFVIPSVLKACG 190 (566)
Q Consensus 115 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~~~ 190 (566)
.+..+..-|.+.+++++|.+++. .-...+.+.|+...|-++ .+-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~-----------~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELIS-----------QGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHH-----------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 45556667788888999988765 234556677887776664 455556688888888888888775
Q ss_pred ccCChh-HHHHHHHHHH----HcCC--CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHc---CC
Q 036165 191 HLSDIG-TGEKIHSLVL----KHSF--GTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQR---GL 260 (566)
Q Consensus 191 ~~~~~~-~a~~~~~~~~----~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~ 260 (566)
....-+ .-.++.+.++ +.|- .-++.....+...|.+.|++.+|+..|-.-...|...+..++.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 533211 2233333333 3331 236677788888888888888888877633222445555544444433 33
Q ss_pred hhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036165 261 ATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMR 307 (566)
Q Consensus 261 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 307 (566)
..++-- ..-..++ -|.-.++...|..+++...
T Consensus 184 ~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 184 DSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred cchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 322211 1111222 3345677777777777653
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.00 E-value=2.3 Score=40.39 Aligned_cols=73 Identities=11% Similarity=0.031 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH----hcCCCCChhHHHH
Q 036165 419 WNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE----KYKIMPRTEHYAC 491 (566)
Q Consensus 419 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~~ 491 (566)
...++..+...|+++++...+..+....+.+...+..++.++...|+..+|.+.|+.+.. ..|+.|++.+-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 344566777888888888888888777788888899999999999999999888887644 3488888765433
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.91 E-value=2.7 Score=43.47 Aligned_cols=49 Identities=12% Similarity=-0.027 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhc
Q 036165 516 PDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANA 565 (566)
Q Consensus 516 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 565 (566)
.+..-|..|+....+.+++++|.+.|+..+... -++-....|-.+|.+.
T Consensus 611 ks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~R-Fs~ka~~kLLeiY~~~ 659 (754)
T 4gns_B 611 HSGLEWELLGLIMLRTWHWEDAVACLRTSIVAR-FDPVSCQQLLKIYLQP 659 (754)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHSC
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHhc
Confidence 455668888888888899999999999988643 4667777777777653
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=89.62 E-value=12 Score=34.20 Aligned_cols=132 Identities=11% Similarity=0.063 Sum_probs=79.0
Q ss_pred HHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHH----HHhHHCCCCCCcchHHHHHHHHc
Q 036165 115 IATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVF----HEMHIQGLKQNIFVIPSVLKACG 190 (566)
Q Consensus 115 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~~~~~ll~~~~ 190 (566)
++.++..-|.+.+++++|.+++- .-...+.+.|+...|.++- +-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~-----------~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILA-----------SVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHH-----------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 44555666888899999988764 2345566778877666655 55556678888888888888776
Q ss_pred ccCChh-HHHHHHHHHH----HcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 036165 191 HLSDIG-TGEKIHSLVL----KHS--FGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQ 257 (566)
Q Consensus 191 ~~~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 257 (566)
....-+ .=..+.+.++ +.| ..-|+.....+...|.+.+++.+|+..|-.-.+++...+..++.-+..
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYK 179 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHH
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 554321 1222333333 223 223556667777777777777777777642222222455444443333
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.39 E-value=11 Score=41.68 Aligned_cols=185 Identities=14% Similarity=0.121 Sum_probs=117.1
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC----C----------------
Q 036165 355 SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE----R---------------- 414 (566)
Q Consensus 355 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~---------------- 414 (566)
.++..+...+..+.+.++... .+.++...-.+..+|..+|++++|...|.+... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 445555666666665554332 223444445677889999999999999987652 0
Q ss_pred ------ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCC-CCH----HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCC
Q 036165 415 ------NTVTWNSMIFGCANHGYCDEAIELFNQMEERKK-LDH----LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIM 483 (566)
Q Consensus 415 ------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 483 (566)
-..-|..++..+.+.+.++.+.++-+...+... .+. ..|..+.+++...|++++|...+-.+... .
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~-- 968 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-P-- 968 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-S--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-H--
Confidence 012366778888899999999998888877632 232 15788899999999999999999877654 2
Q ss_pred CChhHHHHHHHHHHhcCCHHHH------------HHHHHh-cCC--C-CCHHHHHHHHHH-HHhcCCHH-HHHHHHHHHh
Q 036165 484 PRTEHYACMVDLLGRAGRLAEA------------YEMIKT-MST--E-PDLFVWGALLGA-CKNHGNIE-LAEIAAKHLS 545 (566)
Q Consensus 484 p~~~~~~~l~~~~~~~g~~~~A------------~~~~~~-~~~--~-p~~~~~~~l~~~-~~~~g~~~-~A~~~~~~~~ 545 (566)
--......|+..++..|..++- .+++.. +.. . .+...|..++.+ +...||+. .|..+|+++.
T Consensus 969 ~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 2345677788777776655543 333321 110 0 111234444444 45566654 4455677766
Q ss_pred hh
Q 036165 546 EL 547 (566)
Q Consensus 546 ~~ 547 (566)
++
T Consensus 1049 RL 1050 (1139)
T 4fhn_B 1049 RY 1050 (1139)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.36 E-value=2 Score=44.37 Aligned_cols=124 Identities=11% Similarity=0.075 Sum_probs=75.4
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCC-hhHHHHHHHHHHHc------CCCC-c------
Q 036165 149 ALTGAYARRGY-HQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSD-IGTGEKIHSLVLKH------SFGT-D------ 213 (566)
Q Consensus 149 ~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~------g~~~-~------ 213 (566)
.++..+...|+ ++.|+.+|+++......-+......++..+...++ --+|.+++.+.++. ..++ +
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~ 332 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL 332 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence 44455555556 57899999998876322222222233333333332 22344444444321 1111 1
Q ss_pred ----hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHHcCChhHHHHHHHHhh
Q 036165 214 ----AFVVSSLIDMYSKCGSVEKAKKVFDEMVE--K-DIVAMNAMVSGYVQRGLATEALNLVEEIG 272 (566)
Q Consensus 214 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 272 (566)
......-.+.+...|+++.|+++-++... | +-.+|..|..+|...|+++.|+-.++.+.
T Consensus 333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11333345567778999999999988832 3 56789999999999999999999888873
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=88.72 E-value=18 Score=39.96 Aligned_cols=124 Identities=10% Similarity=0.019 Sum_probs=67.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCc-------------------
Q 036165 218 SSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKP------------------- 278 (566)
Q Consensus 218 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p------------------- 278 (566)
..++..+...+..+.+.++..-+ +.+....-.+..++...|++++|.+.|.+.-. |+..
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~-~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWL-NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhhHHHHHHHhhhc-cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccccc
Confidence 34556666777777777655444 34555445566778888999999988877521 1111
Q ss_pred ----cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036165 279 ----NVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPD----VVSWTSVISGLVHNFCNDEAFDTFKEMLS 343 (566)
Q Consensus 279 ----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 343 (566)
-..-|..++..+.+.+.++.+.++-...++.....+ ...|..+.+++...|++++|...+-.+-.
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd 966 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST 966 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence 011244455555555555555555544443211111 11345555555555566555555555443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=86.53 E-value=16 Score=34.61 Aligned_cols=70 Identities=6% Similarity=-0.003 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHH-----hCCCCcHhHHH
Q 036165 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIV-----MGVEGDLHVRS 389 (566)
Q Consensus 319 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 389 (566)
..++..+...|++++++..+..+.... +.+...+..++.++...|+..+|...|+.+.+ .|+.|+..+-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 445666777788888887777776553 55667777888888888888888877776543 57777766543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=85.74 E-value=6.5 Score=28.45 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=39.2
Q ss_pred hHHHHHHHHHhhhc-CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036165 432 CDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVD 494 (566)
Q Consensus 432 ~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 494 (566)
.-+..+-+..+... ..|++....+.+++|-+.+++..|.++++.++.+- .+...+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 33455555555555 67777777777777777777777777777777652 233445665553
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=85.37 E-value=3.8 Score=31.53 Aligned_cols=71 Identities=14% Similarity=0.027 Sum_probs=51.4
Q ss_pred CCCCHHHHHHHHHHHhccCCh---HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC
Q 036165 446 KKLDHLSFTAVLTACCHVGLV---ELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPD 517 (566)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~ 517 (566)
..|+..+--.+..++.++.+. ..++.+++.+... +..-..+.+-.|.-++.+.|++++|++..+.+. .+|+
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 556777777777777776654 4678888888765 411234566677888999999999999999887 4565
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=84.20 E-value=7.8 Score=28.03 Aligned_cols=62 Identities=13% Similarity=0.144 Sum_probs=44.1
Q ss_pred ChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 036165 260 LATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVI 322 (566)
Q Consensus 260 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 322 (566)
+.-++.+-++.+....+.|++......+++|-+.+++..|.++++.++... ......|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 444666777777777788888888888888888888888888888876552 22234455544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=82.84 E-value=15 Score=28.63 Aligned_cols=70 Identities=14% Similarity=0.031 Sum_probs=49.8
Q ss_pred CCCHHHHHHHHHHHhccCCh---HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC
Q 036165 447 KLDHLSFTAVLTACCHVGLV---ELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPD 517 (566)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~ 517 (566)
.++..+-..+..++.++.+. .+++.+++.+... +..-..+..-.|.-++.+.|++++|++..+.+. .+|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 56777777777777776654 4677788887765 322234455567788999999999999998887 5664
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=81.66 E-value=12 Score=26.83 Aligned_cols=88 Identities=11% Similarity=0.035 Sum_probs=61.7
Q ss_pred CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhh
Q 036165 193 SDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272 (566)
Q Consensus 193 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 272 (566)
...++|..+-+.+...|. ...+--.-+..+...|++++|..+.+.+.-||...|-+|-. .+.|-.+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356777777777776653 22232333455678899999999999999889888877643 57788888888887777
Q ss_pred hCCCCccHHHHHH
Q 036165 273 TPRVKPNVVTWNT 285 (566)
Q Consensus 273 ~~~~~p~~~~~~~ 285 (566)
..| .|....|..
T Consensus 96 ~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 96 GSS-DPALADFAA 107 (115)
T ss_dssp TCS-SHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 766 555555543
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=81.12 E-value=13 Score=26.76 Aligned_cols=88 Identities=11% Similarity=0.097 Sum_probs=62.5
Q ss_pred CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhh
Q 036165 193 SDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272 (566)
Q Consensus 193 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 272 (566)
...++|..|-+.+...|. ...+--.-+..+...|++++|..+.+.+.-||...|-+|-. .+.|-.+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356778878777776653 22233333455778899999999999999999998887754 46788888888887887
Q ss_pred hCCCCccHHHHHH
Q 036165 273 TPRVKPNVVTWNT 285 (566)
Q Consensus 273 ~~~~~p~~~~~~~ 285 (566)
..| .|....|..
T Consensus 97 ~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 97 RSQ-DPRIQTFVN 108 (116)
T ss_dssp TCC-CHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 766 555555543
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=80.52 E-value=15 Score=32.36 Aligned_cols=52 Identities=8% Similarity=-0.045 Sum_probs=24.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCchH---HHHHHHHHHhhcCChHHHHHHhccC
Q 036165 84 RIEIYIRDRALQSGKILHAQLIVSGLARLTQ---IATKLITFYTECQNIHHARMLFDEI 139 (566)
Q Consensus 84 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~ 139 (566)
.+...+..|+++..+.+ ++.|..++.. .-...+...+..|+.+-+..+++.-
T Consensus 8 ~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 62 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQL----LEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62 (285)
T ss_dssp HHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHH----HHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 34455556665544443 3444332211 1123344555566666666666543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 566 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.67 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.57 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.28 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.26 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.25 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.23 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.23 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.18 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.14 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.11 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.0 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.91 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.91 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.89 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.79 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.77 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.73 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.73 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.71 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.66 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.62 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.52 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.51 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.42 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.42 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.42 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.38 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.32 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.29 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.26 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.23 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.19 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.15 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.15 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.15 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.13 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.1 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.07 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.04 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.03 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.95 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.9 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.87 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.87 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.81 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.78 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.72 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.59 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.57 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.16 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.04 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.74 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.46 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.14 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.02 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.93 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.18 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.77 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.49 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 88.84 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.81 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 84.59 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.3e-23 Score=203.41 Aligned_cols=376 Identities=12% Similarity=0.062 Sum_probs=251.6
Q ss_pred HHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 036165 152 GAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVE 231 (566)
Q Consensus 152 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 231 (566)
..+.+.|++++|++.++++.+.. +-+...+..+...+...|++++|...++++++.. +.+.
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~----------------- 67 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLA----------------- 67 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-----------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH-----------------
Confidence 34445555555555555555431 1123344444444555555555555555554432 2233
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 036165 232 KAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV 311 (566)
Q Consensus 232 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 311 (566)
.+|..+...+.+.|++++|+..+........ .+..............+....+...........
T Consensus 68 --------------~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 131 (388)
T d1w3ba_ 68 --------------EAYSNLGNVYKERGQLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN- 131 (388)
T ss_dssp --------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-
T ss_pred --------------HHHHHHHHHhhhhcccccccccccccccccc-ccccccccccccccccccccccccccccccccc-
Confidence 3444444555555555555555554443321 122222222222222333333333333322221
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHH
Q 036165 312 EPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSAL 391 (566)
Q Consensus 312 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 391 (566)
.................+....+...+....... +.+...+..+...+...|+++.|...+....+..+. +...+..+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 209 (388)
T d1w3ba_ 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINL 209 (388)
T ss_dssp TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 2233333334444555556666666665555432 334455566666666777777777777776665433 56677778
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHH
Q 036165 392 VDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVEL 468 (566)
Q Consensus 392 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 468 (566)
...+...|++++|...+++... .+...+..+...+.+.|++++|...|++..+..+.+..++..+..++...|++++
T Consensus 210 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 289 (388)
T d1w3ba_ 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAE 289 (388)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHH
T ss_pred hhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888887653 4566788888899999999999999999988777788899999999999999999
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 036165 469 GQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAEIAAKHLSE 546 (566)
Q Consensus 469 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (566)
|.+.++..... .+.+...+..+..++.+.|++++|.+.++++. ..| +..+|..+..+|.+.|++++|+..++++++
T Consensus 290 A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 290 AEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999875 45677888999999999999999999999987 344 577889999999999999999999999999
Q ss_pred hCCCCchHHHHHHHHHhhcC
Q 036165 547 LEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 547 ~~p~~~~~~~~l~~~~~~~g 566 (566)
++|+++.++..||++|.++|
T Consensus 368 l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 368 ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TCTTCHHHHHHHHHHHHHTC
T ss_pred hCCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999876
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=7e-21 Score=183.90 Aligned_cols=373 Identities=13% Similarity=0.044 Sum_probs=236.0
Q ss_pred HHHHHhhcCChHHHHHHhccCCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCCh
Q 036165 119 LITFYTECQNIHHARMLFDEIPK--T-NIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDI 195 (566)
Q Consensus 119 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 195 (566)
+...+-+.|++++|.+.|+++.+ | +..++..+...+.+.|++++|+..|++..+.. +-+..++..+...+...|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence 45567788999999999988754 3 56789999999999999999999999998863 23566888888999999999
Q ss_pred hHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc---CCCChhhHHHHHHHHHHcCChhHHHHHHHHhh
Q 036165 196 GTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM---VEKDIVAMNAMVSGYVQRGLATEALNLVEEIG 272 (566)
Q Consensus 196 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 272 (566)
++|...+....+.. +.+..............+....+....... ..................+....+...+....
T Consensus 84 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhh
Confidence 99999999998875 334444444444444445444444444333 22344444555555556666666666666555
Q ss_pred hCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 036165 273 TPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSAT 352 (566)
Q Consensus 273 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 352 (566)
... +-+...+..+...+...|+++.|...++...+.. +.+...|..+...+...|++++|+..+++....+ +.
T Consensus 163 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~---- 235 (388)
T d1w3ba_ 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PN---- 235 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TT----
T ss_pred ccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hh----
Confidence 432 2234555556666666666666666666665542 2234555666666666666666666666655432 22
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhc
Q 036165 353 ISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANH 429 (566)
Q Consensus 353 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 429 (566)
+...+..+...+.+.|++++|+..|++..+ .+..+|..+...+...
T Consensus 236 -------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 284 (388)
T d1w3ba_ 236 -------------------------------HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK 284 (388)
T ss_dssp -------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHH
T ss_pred -------------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 333444455555555555555555554432 2344556666666666
Q ss_pred CChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 036165 430 GYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMI 509 (566)
Q Consensus 430 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 509 (566)
|++++|.+.++......+.+...+..+..++...|++++|++.++++.+. .+-+...+..+..+|.+.|++++|...|
T Consensus 285 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~ 362 (388)
T d1w3ba_ 285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666666666656666666666666666677777777776666542 1223455666666677777777777777
Q ss_pred HhcC-CCC-CHHHHHHHHHHHHhcCC
Q 036165 510 KTMS-TEP-DLFVWGALLGACKNHGN 533 (566)
Q Consensus 510 ~~~~-~~p-~~~~~~~l~~~~~~~g~ 533 (566)
+++. ..| +...|..++.+|.+.||
T Consensus 363 ~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 363 KEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 6655 234 35566666666666554
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=2.6e-15 Score=140.66 Aligned_cols=229 Identities=10% Similarity=-0.056 Sum_probs=143.4
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHH
Q 036165 325 LVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEA 404 (566)
Q Consensus 325 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 404 (566)
+.+.|++++|+..|++.++.. +-+...+..+..++...|+++.|...+.++++..+. +...+..+...|...|++++|
T Consensus 29 ~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A 106 (323)
T d1fcha_ 29 RLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQA 106 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccccccccccc
Confidence 344444444444444444332 222333444444444444444444444444443322 334444444444445555555
Q ss_pred HHHHHhcCC--C----------------ChhHHHHHHHHHHhcCChHHHHHHHHHhhhc--CCCCHHHHHHHHHHHhccC
Q 036165 405 RTLFDKMSE--R----------------NTVTWNSMIFGCANHGYCDEAIELFNQMEER--KKLDHLSFTAVLTACCHVG 464 (566)
Q Consensus 405 ~~~~~~~~~--~----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g 464 (566)
.+.+++... | +.......+..+...+...+|...|.+..+. ...+...+..+...+...|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~ 186 (323)
T d1fcha_ 107 CEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG 186 (323)
T ss_dssp HHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT
T ss_pred ccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 444443321 1 0011111223344556678888888888776 3456778888999999999
Q ss_pred ChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036165 465 LVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAK 542 (566)
Q Consensus 465 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 542 (566)
++++|+..++++... .+-+...|..++.+|.+.|++++|.+.++++. .+.+..+|..++.+|.+.|++++|+..|+
T Consensus 187 ~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 264 (323)
T d1fcha_ 187 EYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL 264 (323)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999875 23457788999999999999999999999887 33467889999999999999999999999
Q ss_pred HHhhhCCCCchHHHH
Q 036165 543 HLSELEPESAANNML 557 (566)
Q Consensus 543 ~~~~~~p~~~~~~~~ 557 (566)
++++++|++...+..
T Consensus 265 ~al~l~p~~~~~~~~ 279 (323)
T d1fcha_ 265 EALNMQRKSRGPRGE 279 (323)
T ss_dssp HHHHHHHTC------
T ss_pred HHHHhCCcChhhhhh
Confidence 999999988765443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.3e-12 Score=121.90 Aligned_cols=221 Identities=15% Similarity=0.146 Sum_probs=99.9
Q ss_pred HHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH
Q 036165 254 GYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDE 333 (566)
Q Consensus 254 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 333 (566)
.+.+.|++++|+..|+++.+.. +-+..+|..+..++...|+++.|...+.+..+.. +-+...|..+..+|...|++++
T Consensus 28 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~ 105 (323)
T d1fcha_ 28 RRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQ 105 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccccc
Confidence 3444455555555555444332 1123444444445555555555555555444431 1133444444555555555555
Q ss_pred HHHHHHHHHHCCCCCCHH----------------HHHHHHHHHHccCchHHHHHHHHHHHHhCCC-CcHhHHHHHHHHHH
Q 036165 334 AFDTFKEMLSQGFCPTSA----------------TISSILPACASAANMRRGKEIHGCAIVMGVE-GDLHVRSALVDMYA 396 (566)
Q Consensus 334 A~~~~~~m~~~~~~~~~~----------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 396 (566)
|.+.+++..... |+.. .....+..+...+...++...+..+.+..+. .+..++..+...+.
T Consensus 106 A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~ 183 (323)
T d1fcha_ 106 ACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 183 (323)
T ss_dssp HHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred cccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 555555544321 1100 0001111122233444445555444443322 23344444555555
Q ss_pred hcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 036165 397 KCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLF 473 (566)
Q Consensus 397 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 473 (566)
..|++++|+..|++... .+...|..+...|...|++++|.+.|++..+..+.+..++..++.+|.+.|++++|++.|
T Consensus 184 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 263 (323)
T d1fcha_ 184 LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 263 (323)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 55555555555554432 233444555555555555555555555555444444445555555555555555555555
Q ss_pred HHhHH
Q 036165 474 NMMQE 478 (566)
Q Consensus 474 ~~~~~ 478 (566)
+++++
T Consensus 264 ~~al~ 268 (323)
T d1fcha_ 264 LEALN 268 (323)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=7.6e-11 Score=105.69 Aligned_cols=220 Identities=9% Similarity=-0.077 Sum_probs=143.8
Q ss_pred hHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHH
Q 036165 332 DEAFDTFKEMLSQGF-CP--TSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLF 408 (566)
Q Consensus 332 ~~A~~~~~~m~~~~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 408 (566)
+.++.-+++...... .+ ...++..+..++.+.|++++|...|++.++..+. ++.++..+..+|.+.|++++|+..|
T Consensus 16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhh
Confidence 445555555554321 11 1234555666777777777777777777776544 6778888888889999999999988
Q ss_pred HhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC
Q 036165 409 DKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR 485 (566)
Q Consensus 409 ~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 485 (566)
++..+ .+..++..+..+|...|++++|.+.|++..+..+.+......+..++...+..+....+....... .++
T Consensus 95 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 171 (259)
T d1xnfa_ 95 DSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---DKE 171 (259)
T ss_dssp HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---CCC
T ss_pred hHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---chh
Confidence 88774 346678888888999999999999999988876666666555555566666655555555554432 223
Q ss_pred hhHHHHHHHHHHhcCCH----HHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHH
Q 036165 486 TEHYACMVDLLGRAGRL----AEAYEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNM 556 (566)
Q Consensus 486 ~~~~~~l~~~~~~~g~~----~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 556 (566)
...++ ++..+...... +.+...+.... ..| ...+|..+...|...|++++|...+++++..+|++...|.
T Consensus 172 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 172 QWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp STHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred hhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 32232 22333222222 22222222111 112 2356777889999999999999999999999998865553
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=1.5e-10 Score=106.69 Aligned_cols=210 Identities=10% Similarity=0.100 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcC-CHHHHHHHHHhcCC---CChhHHHHHHHHH
Q 036165 351 ATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCG-FISEARTLFDKMSE---RNTVTWNSMIFGC 426 (566)
Q Consensus 351 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 426 (566)
..+..+...+.+.+.+++|...++++++..+. +...|+....++...| ++++|+..+++..+ .+..+|..+...+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence 45666777788899999999999999998755 7778888888888876 59999999998764 5678999999999
Q ss_pred HhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC-----
Q 036165 427 ANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGR----- 501 (566)
Q Consensus 427 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----- 501 (566)
...|++++|++.++++.+..+.+...|..+..++...|++++|++.++.+.+. . +-+...|+.+..++.+.|.
T Consensus 123 ~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~-~-p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE-D-VRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-C-CccHHHHHHHHHHHHHccccchhh
Confidence 99999999999999999988889999999999999999999999999999976 2 3356778888777776665
Q ss_pred -HHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC--chHHHHHHHHHhh
Q 036165 502 -LAEAYEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAEIAAKHLSELEPES--AANNMLLTDLYAN 564 (566)
Q Consensus 502 -~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~ 564 (566)
+++|.+.+.++. ..| +...|..+...+.. ...+++...++.++++.|+. +..+..++.+|..
T Consensus 201 ~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 678888888876 334 67778877766554 45689999999999888765 4455667777653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.25 E-value=1.2e-10 Score=108.84 Aligned_cols=229 Identities=9% Similarity=-0.103 Sum_probs=170.1
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--chHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 036165 328 NFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA--NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEAR 405 (566)
Q Consensus 328 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 405 (566)
.|.+++|+..++...+.. +-+...+..+..++...+ +.+++...+..+.+..+......+......+...|.+++|.
T Consensus 86 ~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al 164 (334)
T d1dcea1 86 AALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEEL 164 (334)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHH
Confidence 445678888888887653 344555565655555544 57888888888888765433333445567778889999999
Q ss_pred HHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCC
Q 036165 406 TLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKI 482 (566)
Q Consensus 406 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 482 (566)
..++...+ .+...|+.+..++.+.|++++|...+++..+..+. ...+...+...+..+++...+...... .
T Consensus 165 ~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~a~~~~~~~l~~--~ 238 (334)
T d1dcea1 165 AFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLK----ELELVQNAFFTDPNDQSAWFYHRWLLG--R 238 (334)
T ss_dssp HHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHH----HHHHHHHHHHHCSSCSHHHHHHHHHHS--C
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHH----HHHHHHHHHHhcchhHHHHHHHHHHHh--C
Confidence 99998886 45678888999999999988887666555443221 122333455667778888888887764 3
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHH
Q 036165 483 MPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTD 560 (566)
Q Consensus 483 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 560 (566)
+++...+..++..+...|++++|...+.+.. ..| +..+|..++.++...|+.++|...++++++++|++..+|..|+.
T Consensus 239 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~ 318 (334)
T d1dcea1 239 AEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 318 (334)
T ss_dssp CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHH
Confidence 4556667778888889999999999999887 334 45677888899999999999999999999999999999998887
Q ss_pred HHh
Q 036165 561 LYA 563 (566)
Q Consensus 561 ~~~ 563 (566)
.+.
T Consensus 319 ~~~ 321 (334)
T d1dcea1 319 KFL 321 (334)
T ss_dssp HHH
T ss_pred HHh
Confidence 664
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.23 E-value=1.2e-09 Score=100.24 Aligned_cols=188 Identities=11% Similarity=0.089 Sum_probs=152.9
Q ss_pred CchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C-hhHHHHHHHHHHhcCChHHHHHHH
Q 036165 364 ANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE--R-N-TVTWNSMIFGCANHGYCDEAIELF 439 (566)
Q Consensus 364 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~l~~~~~~~~~~~~A~~~~ 439 (566)
+..+.+..+++..++...+.+...+...+..+.+.|+++.|..+|+++.+ | + ...|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34577888888888765555677888888999999999999999998765 3 3 346888889999999999999999
Q ss_pred HHhhhcCCCCHHHHHHHHHH-HhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-C---
Q 036165 440 NQMEERKKLDHLSFTAVLTA-CCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-T--- 514 (566)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~--- 514 (566)
+++.+..+.+...|...+.. +...|+.+.|..+|+.+... .+.+...|..+++.+.+.|+.++|+.+|++.. .
T Consensus 158 ~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 99988766666666665543 34568999999999999986 34567889999999999999999999999975 1
Q ss_pred CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCch
Q 036165 515 EP--DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAA 553 (566)
Q Consensus 515 ~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 553 (566)
.| ....|...+.--..+|+.+.+..+++++.+..|++..
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence 22 2457888888888999999999999999998887754
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=9.5e-10 Score=101.10 Aligned_cols=239 Identities=8% Similarity=0.046 Sum_probs=123.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-chHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh
Q 036165 319 TSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAA-NMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK 397 (566)
Q Consensus 319 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 397 (566)
+.+...+.+.+.+++|+..++++++.. +-+...+.....++...| ++++|...++.+++..+. +..++..+...+.+
T Consensus 47 ~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~~~ 124 (315)
T d2h6fa1 47 DYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEW 124 (315)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHHHh
Confidence 333444444555555555555555432 222333444444444443 355555555555554433 45556666666666
Q ss_pred cCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCC------hHH
Q 036165 398 CGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGL------VEL 468 (566)
Q Consensus 398 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~ 468 (566)
.|++++|+..++++.+ .+...|..+...+...|++++|++.++++.+..+.+...|+.+..++.+.+. +++
T Consensus 125 l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ 204 (315)
T d2h6fa1 125 LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLER 204 (315)
T ss_dssp HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHH
T ss_pred hccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHH
Confidence 6666666666665553 3455666666666666666666666666666655566666655555444433 455
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCCHHHHHHHHHHHHhc--C-------CHH
Q 036165 469 GQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS----TEPDLFVWGALLGACKNH--G-------NIE 535 (566)
Q Consensus 469 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~--g-------~~~ 535 (566)
|++.+..+.+. .+.+...|..+...+...| .+++.+.++... ...+...+..++..|... + .++
T Consensus 205 ai~~~~~al~~--~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ 281 (315)
T d2h6fa1 205 EVQYTLEMIKL--VPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILN 281 (315)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred hHHHHHHHHHh--CCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 66666666553 1234455555555444332 344444444332 112344444455444322 2 234
Q ss_pred HHHHHHHHHh-hhCCCCchHHHHHHHHH
Q 036165 536 LAEIAAKHLS-ELEPESAANNMLLTDLY 562 (566)
Q Consensus 536 ~A~~~~~~~~-~~~p~~~~~~~~l~~~~ 562 (566)
+|..+++... +.+|--..++..++.-+
T Consensus 282 ka~~l~~~l~~~~DpiR~~yw~~~~~~l 309 (315)
T d2h6fa1 282 KALELCEILAKEKDTIRKEYWRYIGRSL 309 (315)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4444444432 34565556666655544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=4.9e-09 Score=98.19 Aligned_cols=263 Identities=13% Similarity=0.043 Sum_probs=124.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--CC------hhhHHHHHHHHHHcCChhHHHHHHHHhhhC----CCCc-cHHHHHHH
Q 036165 220 LIDMYSKCGSVEKAKKVFDEMVE--KD------IVAMNAMVSGYVQRGLATEALNLVEEIGTP----RVKP-NVVTWNTL 286 (566)
Q Consensus 220 l~~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~l 286 (566)
....+...|++++|++++++..+ |+ ...+..+...+...|++++|+..+++.... +..+ ....+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 34455566666666666665421 11 123445555666666666666666655431 1111 11233344
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHc----CCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036165 287 ISGFSKSGDQVMVSKLFQLMRAK----GVEPD---VVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPA 359 (566)
Q Consensus 287 l~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 359 (566)
...+...|++..+...+...... +.... ...+..+...+...|+++.+...+..........
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~----------- 166 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY----------- 166 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhh-----------
Confidence 44455555555555555544321 11110 1122333344444555555555554443321100
Q ss_pred HHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C---ChhHHHHHHHHHHhc
Q 036165 360 CASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSE-------R---NTVTWNSMIFGCANH 429 (566)
Q Consensus 360 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~---~~~~~~~l~~~~~~~ 429 (566)
+.......+......+...++...+...+..... . ....+..+...+...
T Consensus 167 --------------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (366)
T d1hz4a_ 167 --------------------QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT 226 (366)
T ss_dssp --------------------CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT
T ss_pred --------------------hhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhc
Confidence 0111122333334444445555554444433221 0 112334444555566
Q ss_pred CChHHHHHHHHHhhhcCCC----CHHHHHHHHHHHhccCChHHHHHHHHHhHHh---cCCCCC-hhHHHHHHHHHHhcCC
Q 036165 430 GYCDEAIELFNQMEERKKL----DHLSFTAVLTACCHVGLVELGQRLFNMMQEK---YKIMPR-TEHYACMVDLLGRAGR 501 (566)
Q Consensus 430 ~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~~~~l~~~~~~~g~ 501 (566)
|++++|...+++.....+. ....+..+..++...|++++|...++.+... .+..|+ ...+..+..+|.+.|+
T Consensus 227 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 306 (366)
T d1hz4a_ 227 GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 306 (366)
T ss_dssp TCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCC
Confidence 6666666666665544111 1223445566666677777777766665432 122222 3455566677777777
Q ss_pred HHHHHHHHHhcC
Q 036165 502 LAEAYEMIKTMS 513 (566)
Q Consensus 502 ~~~A~~~~~~~~ 513 (566)
+++|.+.+++..
T Consensus 307 ~~~A~~~l~~Al 318 (366)
T d1hz4a_ 307 KSDAQRVLLDAL 318 (366)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777766554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=1e-08 Score=95.98 Aligned_cols=261 Identities=10% Similarity=-0.044 Sum_probs=165.3
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCC-CHHHHHHHHH
Q 036165 288 SGFSKSGDQVMVSKLFQLMRAKGVEPD----VVSWTSVISGLVHNFCNDEAFDTFKEMLSQG----FCP-TSATISSILP 358 (566)
Q Consensus 288 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~-~~~~~~~ll~ 358 (566)
..+...|++++|.+++++..+.....+ ...+..+..++...|++++|+..|++..+.. ..+ ....+..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 334455555555555555544311111 1234445555566666666666666554321 011 1123344445
Q ss_pred HHHccCchHHHHHHHHHHHHh----CCCC---cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CChhHHHHHH
Q 036165 359 ACASAANMRRGKEIHGCAIVM----GVEG---DLHVRSALVDMYAKCGFISEARTLFDKMSE--------RNTVTWNSMI 423 (566)
Q Consensus 359 ~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~ 423 (566)
.+...|++..+...+...... +... ....+..+...+...|+++.+...+..... .....+..+.
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 566666666666666555431 1111 123455677888889999999888876553 1233555666
Q ss_pred HHHHhcCChHHHHHHHHHhhhc-C--CCC----HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC---hhHHHHHH
Q 036165 424 FGCANHGYCDEAIELFNQMEER-K--KLD----HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR---TEHYACMV 493 (566)
Q Consensus 424 ~~~~~~~~~~~A~~~~~~~~~~-~--~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~ 493 (566)
..+...++...+...+.+.... . ... ...+..+...+...|+++.|...++..... ....+ ...+..+.
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-ccccchHHHHHHHHHH
Confidence 7788889999999888877665 1 111 224566677888999999999999987653 21111 24456688
Q ss_pred HHHHhcCCHHHHHHHHHhcC-------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Q 036165 494 DLLGRAGRLAEAYEMIKTMS-------TEP-DLFVWGALLGACKNHGNIELAEIAAKHLSELEP 549 (566)
Q Consensus 494 ~~~~~~g~~~~A~~~~~~~~-------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 549 (566)
.++...|++++|...++++. ..| ...++..+...|.+.|++++|.+.+++++++.+
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 322 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999998875 122 245677888999999999999999999987543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.11 E-value=7.5e-09 Score=94.87 Aligned_cols=184 Identities=14% Similarity=0.067 Sum_probs=143.3
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 036165 330 CNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFD 409 (566)
Q Consensus 330 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 409 (566)
..++|..+|++.++...+.+...+...+....+.|+.+.+..+++.+++........++..++....+.|+.+.|+.+|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34778888888876554555566777777888889999999999988876554445678888888899999999999998
Q ss_pred hcCC--C-ChhHHHHHHHH-HHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC
Q 036165 410 KMSE--R-NTVTWNSMIFG-CANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR 485 (566)
Q Consensus 410 ~~~~--~-~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 485 (566)
++.+ | +...|...... +...|+.+.|..+|+++.+..+.+...|..++..+...|+++.|..+|++.....+..|+
T Consensus 159 ~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~ 238 (308)
T d2onda1 159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence 8765 2 33344333332 334688999999999999887788889999999999999999999999999876344543
Q ss_pred --hhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 486 --TEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 486 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
...|...+..-...|+.+.+.++++++.
T Consensus 239 ~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 239 KSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3478888888788899999999998875
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=6.2e-09 Score=79.69 Aligned_cols=107 Identities=12% Similarity=-0.034 Sum_probs=94.8
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcC
Q 036165 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHG 532 (566)
Q Consensus 455 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g 532 (566)
.-...+...|++++|+..|+++++. .+-++..|..+..+|.+.|++++|...++++. .+.++..|..+..++...|
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence 3466788899999999999999875 34567789999999999999999999999887 4567889999999999999
Q ss_pred CHHHHHHHHHHHhhhCCCCchHHHHHHHHHh
Q 036165 533 NIELAEIAAKHLSELEPESAANNMLLTDLYA 563 (566)
Q Consensus 533 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 563 (566)
++++|+..++++++.+|+++.++..++++-+
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 9999999999999999999999999998765
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.91 E-value=2.4e-09 Score=99.68 Aligned_cols=230 Identities=5% Similarity=-0.112 Sum_probs=148.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHccCchHHHH
Q 036165 294 GDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNF--CNDEAFDTFKEMLSQGFCPTSATI-SSILPACASAANMRRGK 370 (566)
Q Consensus 294 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~ 370 (566)
|++++|+..++...+.. +.+...|..+..++...+ ++++|+..++++.+.. +++...+ ......+...+..+.|.
T Consensus 87 ~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al 164 (334)
T d1dcea1 87 ALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEEL 164 (334)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHH
Confidence 34566777777766542 335556666655555544 3667777777776653 2334433 34445666677777777
Q ss_pred HHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCH
Q 036165 371 EIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDH 450 (566)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 450 (566)
..++.+++..+. +...++.+..++.+.|++++|...++...+-.... ......+...+..+++...+.......+++.
T Consensus 165 ~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~ 242 (334)
T d1dcea1 165 AFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE-LELVQNAFFTDPNDQSAWFYHRWLLGRAEPL 242 (334)
T ss_dssp HHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH-HHHHHHHHHHCSSCSHHHHHHHHHHSCCCCS
T ss_pred HHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH-HHHHHHHHHhcchhHHHHHHHHHHHhCcchh
Confidence 777777766544 66777778888888888877765554443311111 1223334556667778888887777666666
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC-HHHHHHHHHHH
Q 036165 451 LSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPD-LFVWGALLGAC 528 (566)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~ 528 (566)
..+..++..+...|++++|...+.+.... .+.+...+..++.+|.+.|++++|.+.++++. ..|+ ..-|..+...+
T Consensus 243 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~ 320 (334)
T d1dcea1 243 FRCELSVEKSTVLQSELESCKELQELEPE--NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 320 (334)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHhh--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence 67777777777888888888888877643 12245677788888889999999999998877 4454 44556565544
Q ss_pred H
Q 036165 529 K 529 (566)
Q Consensus 529 ~ 529 (566)
.
T Consensus 321 ~ 321 (334)
T d1dcea1 321 L 321 (334)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=4.9e-09 Score=93.49 Aligned_cols=199 Identities=12% Similarity=0.043 Sum_probs=141.2
Q ss_pred chHHHHHHHHHHHHhCCCC---cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHH
Q 036165 365 NMRRGKEIHGCAIVMGVEG---DLHVRSALVDMYAKCGFISEARTLFDKMSE---RNTVTWNSMIFGCANHGYCDEAIEL 438 (566)
Q Consensus 365 ~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~ 438 (566)
+.+.+...++++....... ...++..+..+|.+.|++++|+..|++..+ .++.+|+.+..+|.+.|++++|++.
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 3445555555655432211 245677788999999999999999998874 5678899999999999999999999
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC
Q 036165 439 FNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEPD 517 (566)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~ 517 (566)
|+++.+..+.+..++..+..++...|++++|.+.++...+. . +.+......+..++.+.+..+.+..+..... ..++
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-D-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 171 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh-c-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchh
Confidence 99999987778889999999999999999999999999876 2 3344444455555666666555555444433 1222
Q ss_pred HHHHHHHHHHHH----hcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 518 LFVWGALLGACK----NHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 518 ~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
...+.. +..+. ..+..+.+...+.......|+....+..||.+|..+|
T Consensus 172 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 223 (259)
T d1xnfa_ 172 QWGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLG 223 (259)
T ss_dssp STHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCC
Confidence 222222 22221 2233555555555556677888889999999998876
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=4.6e-08 Score=82.17 Aligned_cols=120 Identities=10% Similarity=-0.028 Sum_probs=93.8
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHH
Q 036165 392 VDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQR 471 (566)
Q Consensus 392 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 471 (566)
...+...|++++|++.|.++..++..+|..+..+|...|++++|++.|++..+..+.+...|..+..++.+.|++++|.+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~ 91 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIK 91 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHH
Confidence 55667889999999999998888888898999999999999999999999998888888899999999999999999999
Q ss_pred HHHHhHHhcCCCCC----------------hhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 472 LFNMMQEKYKIMPR----------------TEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 472 ~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
.|++.... .+.+ ..++..+..+|.+.|++++|.+.++++.
T Consensus 92 ~~~kAl~~--~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~ 147 (192)
T d1hh8a_ 92 DLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 147 (192)
T ss_dssp HHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99988753 1111 1234445555666666666666665544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=4.8e-08 Score=74.74 Aligned_cols=109 Identities=13% Similarity=-0.074 Sum_probs=90.9
Q ss_pred HHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH---HHHHHHHHhcCC-CCCH---HHHHHHHH
Q 036165 454 TAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL---AEAYEMIKTMST-EPDL---FVWGALLG 526 (566)
Q Consensus 454 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~-~p~~---~~~~~l~~ 526 (566)
..+++.+...+++++|++.|++.... -+.++.++..+..++.+.++. ++|..+++++.. .|++ .+|..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 45777888899999999999999875 345678888999999876554 569999999873 3433 36788999
Q ss_pred HHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhh
Q 036165 527 ACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 527 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 564 (566)
+|.+.|++++|++.|+++++++|++..+...+..|..+
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~ 118 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA 118 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998887654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=1.1e-07 Score=77.31 Aligned_cols=100 Identities=9% Similarity=-0.041 Sum_probs=47.3
Q ss_pred HHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHH
Q 036165 458 TACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIE 535 (566)
Q Consensus 458 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~ 535 (566)
..+.+.|++++|+..|+++.+. .+-+...|..+..+|...|++++|...|+++. .+.+..+|..++.++...|+++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 3444445555555555544443 12233444444455555555555555554443 2223444444555555555555
Q ss_pred HHHHHHHHHhhhCCCCchHHHHHH
Q 036165 536 LAEIAAKHLSELEPESAANNMLLT 559 (566)
Q Consensus 536 ~A~~~~~~~~~~~p~~~~~~~~l~ 559 (566)
+|...++++++++|+++.++..+.
T Consensus 96 eA~~~~~~a~~~~p~~~~~~~~l~ 119 (159)
T d1a17a_ 96 AALRDYETVVKVKPHDKDAKMKYQ 119 (159)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH
Confidence 555555555555555554444443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=6.2e-07 Score=75.04 Aligned_cols=129 Identities=9% Similarity=-0.027 Sum_probs=108.0
Q ss_pred HHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH
Q 036165 423 IFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502 (566)
Q Consensus 423 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 502 (566)
...+...|+++.|++.|.++ .+|+..+|..+..++...|++++|++.|++.++. . +-++..|..+..+|.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l-d-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR-D-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH-h-hhhhhhHHHHHHHHHhhccH
Confidence 56677899999999999865 4678889999999999999999999999999976 2 34578899999999999999
Q ss_pred HHHHHHHHhcC--CCC----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHH
Q 036165 503 AEAYEMIKTMS--TEP----------------DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNM 556 (566)
Q Consensus 503 ~~A~~~~~~~~--~~p----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 556 (566)
++|.+.|++.. .++ ...++..+..++.+.|++++|.+.+++++++.|+......
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~ 158 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKI 158 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHH
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHH
Confidence 99999998864 111 1356677888899999999999999999999887644444
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.73 E-value=2.1e-07 Score=84.12 Aligned_cols=198 Identities=9% Similarity=-0.047 Sum_probs=125.4
Q ss_pred HHHHccCchHHHHHHHHHHHHh----CCCC-cHhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHH
Q 036165 358 PACASAANMRRGKEIHGCAIVM----GVEG-DLHVRSALVDMYAKCGFISEARTLFDKMSE-----RN----TVTWNSMI 423 (566)
Q Consensus 358 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~ 423 (566)
..|...+++++|...|.++.+. +-.+ ...++..+..+|.+.|++++|...+++..+ .+ ..++..+.
T Consensus 45 ~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 124 (290)
T d1qqea_ 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (290)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHH
Confidence 3455666666666666655442 1111 235667777788888888888877776543 11 23455566
Q ss_pred HHHHh-cCChHHHHHHHHHhhhc--CCCC----HHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCCh-----hHHHH
Q 036165 424 FGCAN-HGYCDEAIELFNQMEER--KKLD----HLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRT-----EHYAC 491 (566)
Q Consensus 424 ~~~~~-~~~~~~A~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~ 491 (566)
..|.. .|++++|++.+++..+. ...+ ..++..+...+...|++++|...++++.......+.. ..+..
T Consensus 125 ~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (290)
T d1qqea_ 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (290)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHH
Confidence 66644 58899999988887654 1111 2357778888999999999999999987652111111 22345
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-CCCC------HHHHHHHHHHHHh--cCCHHHHHHHHHHHhhhCCCCchHH
Q 036165 492 MVDLLGRAGRLAEAYEMIKTMS-TEPD------LFVWGALLGACKN--HGNIELAEIAAKHLSELEPESAANN 555 (566)
Q Consensus 492 l~~~~~~~g~~~~A~~~~~~~~-~~p~------~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~p~~~~~~ 555 (566)
.+.++...|+++.|...+++.. ..|+ ......++.++.. .+.+++|+..|+++.+++|......
T Consensus 205 ~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~~~~~L 277 (290)
T d1qqea_ 205 KGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (290)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 5567778899999999999887 2222 2344556666654 2357888888887777765443333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=1.5e-07 Score=77.20 Aligned_cols=77 Identities=13% Similarity=-0.020 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhh
Q 036165 488 HYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 488 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 564 (566)
+|+.+..+|.+.|++++|...++++. .+.++.+|..++.+|...|++++|...|+++++++|+++.+...++.++..
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 46678888899999999999998877 334788888888999999999999999999999999999998888887654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.66 E-value=5.1e-08 Score=82.91 Aligned_cols=97 Identities=9% Similarity=-0.087 Sum_probs=66.4
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCC-ChhHHHHH
Q 036165 414 RNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMP-RTEHYACM 492 (566)
Q Consensus 414 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 492 (566)
|+...+...+..|.+.|++++|+..|++..+..|.+...|..+..+|.+.|++++|+..|+++++ +.| +...|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~---l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH---hCCCcHHHHHHH
Confidence 44555556666777777777777777777766666677777777777777777777777777763 344 35566677
Q ss_pred HHHHHhcCCHHHHHHHHHhcC
Q 036165 493 VDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 493 ~~~~~~~g~~~~A~~~~~~~~ 513 (566)
+.+|.+.|++++|...|+++.
T Consensus 79 g~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 777777777777777777654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.62 E-value=1.8e-06 Score=77.68 Aligned_cols=193 Identities=12% Similarity=0.030 Sum_probs=129.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCchHHHHHHHHHHHHhCCC-----CcHhHHHHH
Q 036165 322 ISGLVHNFCNDEAFDTFKEMLSQ----GFCPT-SATISSILPACASAANMRRGKEIHGCAIVMGVE-----GDLHVRSAL 391 (566)
Q Consensus 322 i~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l 391 (566)
...|...|++++|.+.|.+..+. +-+++ ..++..+..+|.+.|++++|...++...+.... ....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 44577777788887777776542 21222 245677777788888888888887766552111 123455566
Q ss_pred HHHHHh-cCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCH-------HHHH
Q 036165 392 VDMYAK-CGFISEARTLFDKMSE-----RN----TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDH-------LSFT 454 (566)
Q Consensus 392 ~~~~~~-~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~ 454 (566)
...|.. .|++++|+..+++..+ .+ ..++..+...+...|++++|...|+++....+.+. ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 666644 5899999998887653 11 23577788899999999999999999887632221 1244
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCC------hhHHHHHHHHHHh--cCCHHHHHHHHHhcCCCCCH
Q 036165 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPR------TEHYACMVDLLGR--AGRLAEAYEMIKTMSTEPDL 518 (566)
Q Consensus 455 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~p~~ 518 (566)
..+.++...|+++.|.+.+++..+. .|. ......++.++.. .+.+++|...|+++. +-|+
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~---~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~-~lD~ 271 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSE---DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM-RLDK 271 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS-CCCH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh---CCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-hcCH
Confidence 5556777889999999999998753 332 2344566667655 356899999998876 4454
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.52 E-value=1.4e-06 Score=69.82 Aligned_cols=78 Identities=10% Similarity=-0.016 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhh
Q 036165 487 EHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 487 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 564 (566)
.+|..+..+|.+.|++++|++.++++. .+.+..+|..++.++...|++++|+..|+++++++|+|+.+...+..+..+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 467788999999999999999999987 445789999999999999999999999999999999999999988877643
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=2.2e-06 Score=64.98 Aligned_cols=101 Identities=13% Similarity=0.028 Sum_probs=76.5
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 036165 422 MIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGR 501 (566)
Q Consensus 422 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 501 (566)
-...+...|++++|+..|++..+..|.+...|..+..++...|++++|+..+..+.+. .+.++..|..++.+|...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHh--ccchhhHHHHHHHHHHHccC
Confidence 4556777888888888888888877778888888888888888888888888888865 24566778888888888888
Q ss_pred HHHHHHHHHhcC-CCCC-HHHHHHH
Q 036165 502 LAEAYEMIKTMS-TEPD-LFVWGAL 524 (566)
Q Consensus 502 ~~~A~~~~~~~~-~~p~-~~~~~~l 524 (566)
+++|...+++.. ..|+ +..+..+
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l 111 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGL 111 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 888888888876 3443 4444433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.42 E-value=6.2e-07 Score=75.90 Aligned_cols=110 Identities=6% Similarity=-0.192 Sum_probs=95.7
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHH
Q 036165 448 LDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALL 525 (566)
Q Consensus 448 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~ 525 (566)
|+...+...+..+.+.|++++|+..|+++.+. .+.++..|..++.+|.+.|++++|...|+++. ..| +..+|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 67778888899999999999999999999876 34567889999999999999999999999998 345 588899999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHH
Q 036165 526 GACKNHGNIELAEIAAKHLSELEPESAANNMLLT 559 (566)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 559 (566)
.+|.+.|++++|...+++++++.|++...+...+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~ 113 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI 113 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 9999999999999999999999887665543333
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.42 E-value=2.8e-06 Score=69.23 Aligned_cols=76 Identities=11% Similarity=-0.048 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHh
Q 036165 488 HYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563 (566)
Q Consensus 488 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 563 (566)
+|..+..+|.+.|++++|...++++. .+.+..+|..+..++...|++++|+..++++++++|+++.+...++.+..
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 143 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 35556677777777777777777766 34566777777777777777777777777777777777777777766643
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=4.7e-06 Score=67.16 Aligned_cols=119 Identities=12% Similarity=-0.030 Sum_probs=83.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 036165 420 NSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRA 499 (566)
Q Consensus 420 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 499 (566)
......|.+.|++++|+..|++..+..+.+...|..+..++...|++++|...|+++++. .+-+...|..++.+|...
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHH--cccchHHHHHHHHHHHHc
Confidence 334566778888888888888888877777888888888888888888888888888765 233457788888888888
Q ss_pred CCHHHHHHHHHhcC-CCC-CHHHHHHHHHHH--HhcCCHHHHHHH
Q 036165 500 GRLAEAYEMIKTMS-TEP-DLFVWGALLGAC--KNHGNIELAEIA 540 (566)
Q Consensus 500 g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~--~~~g~~~~A~~~ 540 (566)
|++++|...+++.. ..| +...+..+..+. ...+.+++|...
T Consensus 92 g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 88888888888776 334 344444444332 233344445443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.38 E-value=2e-06 Score=70.31 Aligned_cols=80 Identities=10% Similarity=-0.054 Sum_probs=70.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHH
Q 036165 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLY 562 (566)
Q Consensus 485 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 562 (566)
....|..+..+|.+.|++++|+..++++. .+.+..+|..++.++...|++++|+..|+++++++|+++.+...|..++
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34567788899999999999999999987 3456888999999999999999999999999999999999999998886
Q ss_pred hh
Q 036165 563 AN 564 (566)
Q Consensus 563 ~~ 564 (566)
..
T Consensus 156 ~~ 157 (169)
T d1ihga1 156 QK 157 (169)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.32 E-value=1.1e-06 Score=66.04 Aligned_cols=89 Identities=13% Similarity=0.037 Sum_probs=57.4
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcC
Q 036165 455 AVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHG 532 (566)
Q Consensus 455 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g 532 (566)
.+...+.+.|++++|+..++++... . +-++..|..++.++.+.|++++|...++++. .+.+..+|..+...|...|
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~-~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQK-E-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccc-c-cccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence 3455566677777777777776654 1 2245666667777777777777777776665 2334666666777777777
Q ss_pred CHHHHHHHHHHHh
Q 036165 533 NIELAEIAAKHLS 545 (566)
Q Consensus 533 ~~~~A~~~~~~~~ 545 (566)
++++|.+.+++.+
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 7777777766643
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.29 E-value=0.00054 Score=59.91 Aligned_cols=112 Identities=13% Similarity=-0.059 Sum_probs=65.2
Q ss_pred hHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHH
Q 036165 432 CDEAIELFNQMEERKKLDHLSFTAVLTACCH----VGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR----AGRLA 503 (566)
Q Consensus 432 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 503 (566)
...+...+..... ..+...+..+...+.. ..+...+...++...+. | +......+...|.. ..+++
T Consensus 126 ~~~a~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~-g---~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 126 FKKAVEYFTKACD--LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHH
T ss_pred hHHHHHHhhhhhc--ccccchhhhhhhhhccCCCcccccccchhhhhccccc-c---ccccccchhhhcccCcccccchh
Confidence 3444444444332 3344455555555543 34555666666666543 3 44445555555554 45777
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhCC
Q 036165 504 EAYEMIKTMSTEPDLFVWGALLGACKN----HGNIELAEIAAKHLSELEP 549 (566)
Q Consensus 504 ~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p 549 (566)
+|..+|++....-++..+..|...|.+ ..+.++|.+.|+++.+.++
T Consensus 200 ~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 200 EALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 788888777645566677777766654 2367778888888877764
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.26 E-value=4e-06 Score=62.85 Aligned_cols=90 Identities=8% Similarity=-0.075 Sum_probs=71.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 036165 421 SMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAG 500 (566)
Q Consensus 421 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 500 (566)
.+...+.+.|++++|...|++..+..+.+..+|..+..++.+.|++++|+..++++.+. .+.+...|..+..+|...|
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHHHCC
Confidence 45666777888888888888888777777888888888888888888888888888764 2345677888888888888
Q ss_pred CHHHHHHHHHhc
Q 036165 501 RLAEAYEMIKTM 512 (566)
Q Consensus 501 ~~~~A~~~~~~~ 512 (566)
++++|.+.+++.
T Consensus 99 ~~~~A~~~l~~~ 110 (112)
T d1hxia_ 99 NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 888888888764
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.23 E-value=0.0016 Score=58.30 Aligned_cols=281 Identities=9% Similarity=0.049 Sum_probs=146.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHh
Q 036165 212 TDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFS 291 (566)
Q Consensus 212 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 291 (566)
|+..-...+++.|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+.+.+.. +..+|..+...|.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHH
Confidence 455555667778888888888888887653 46677778888888888888776542 4557777777877
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHH
Q 036165 292 KSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFCPTSATISSILPACASAANMRRGKE 371 (566)
Q Consensus 292 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 371 (566)
+..+...+ .+.......++.....++..|-..|.+++...+++..... -..+...++.++..+++.+. ++
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~k--- 150 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QK--- 150 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HH---
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HH---
Confidence 77665443 2223333445555667788888888888888888876543 24566667777777776543 22
Q ss_pred HHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC------------hhHHHHHHHHHHhcCChHHHHHHH
Q 036165 372 IHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERN------------TVTWNSMIFGCANHGYCDEAIELF 439 (566)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~A~~~~ 439 (566)
+.+.+...+...+. ..++..+.+.+-++++.-++.++...+ ..-....+..+.+..+
T Consensus 151 l~e~l~~~s~~y~~---~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N-------- 219 (336)
T d1b89a_ 151 MREHLELFWSRVNI---PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVAN-------- 219 (336)
T ss_dssp HHHHHHHHSTTSCH---HHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSS--------
T ss_pred HHHHHHhccccCCH---HHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCC--------
Confidence 33333332211121 223444444455555544444443211 1111111222222222
Q ss_pred HHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHH
Q 036165 440 NQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMSTEPDLF 519 (566)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~ 519 (566)
+..+...+..|... +.+-...++..+... ++| ..+++.+.+.+++.-...+++......+..
T Consensus 220 ----------~e~~~~~i~~yL~~-~p~~i~~lL~~v~~~--~d~-----~r~V~~~~k~~~l~li~p~Le~v~~~n~~~ 281 (336)
T d1b89a_ 220 ----------VELYYRAIQFYLEF-KPLLLNDLLMVLSPR--LDH-----TRAVNYFSKVKQLPLVKPYLRSVQNHNNKS 281 (336)
T ss_dssp ----------THHHHHHHHHHHHH-CGGGHHHHHHHHGGG--CCH-----HHHHHHHHHTTCTTTTHHHHHHHHTTCCHH
T ss_pred ----------hHHHHHHHHHHHHc-CHHHHHHHHHHhccC--CCH-----HHHHHHHHhcCCcHHHHHHHHHHHHcChHH
Confidence 22333333333321 122233333332221 111 234555556666666666666655445677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 036165 520 VWGALLGACKNHGNIELAEIAAK 542 (566)
Q Consensus 520 ~~~~l~~~~~~~g~~~~A~~~~~ 542 (566)
+.+++...|...+|++.-+...+
T Consensus 282 vn~al~~lyie~~d~~~l~~~i~ 304 (336)
T d1b89a_ 282 VNESLNNLFITEEDYQALRTSID 304 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCcchhHHHHHHHH
Confidence 88899999999998766544443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=3.6e-06 Score=63.94 Aligned_cols=99 Identities=9% Similarity=-0.008 Sum_probs=76.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCC---hHHHHHHHHHhHHhcCCCCC-hhHHHHHHHH
Q 036165 420 NSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGL---VELGQRLFNMMQEKYKIMPR-TEHYACMVDL 495 (566)
Q Consensus 420 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 495 (566)
..++..+...+++++|.+.|++.....+.+..++..+..++.+.++ +++|+.+++++... ...|+ ..++..++.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~-~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-GSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHH
Confidence 3567777888899999999999988888888999999998887554 45688888887754 22222 2467788899
Q ss_pred HHhcCCHHHHHHHHHhcC-CCCCHH
Q 036165 496 LGRAGRLAEAYEMIKTMS-TEPDLF 519 (566)
Q Consensus 496 ~~~~g~~~~A~~~~~~~~-~~p~~~ 519 (566)
|.+.|++++|.+.|+++. ..|+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~ 106 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNN 106 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhhhHHHHHHHHHHHHhCcCCH
Confidence 999999999999999887 456533
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=5.4e-06 Score=59.91 Aligned_cols=79 Identities=19% Similarity=0.104 Sum_probs=63.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcC----C----CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHH
Q 036165 485 RTEHYACMVDLLGRAGRLAEAYEMIKTMS----T----EPD-LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANN 555 (566)
Q Consensus 485 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~----~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 555 (566)
+...+-.++..+.+.|++++|...|+++. . .++ ..++..+..++.+.|++++|+..++++++++|+++.++
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~ 83 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence 34445567778888888888888887765 1 122 56788999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 036165 556 MLLTDLYA 563 (566)
Q Consensus 556 ~~l~~~~~ 563 (566)
.+++.+..
T Consensus 84 ~Nl~~~~~ 91 (95)
T d1tjca_ 84 GNLKYFEY 91 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987653
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=9.3e-07 Score=86.26 Aligned_cols=130 Identities=5% Similarity=-0.071 Sum_probs=61.4
Q ss_pred ChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 036165 431 YCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIK 510 (566)
Q Consensus 431 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 510 (566)
.++.|+..+.+.....+++...+..+...+.+.|+.+.|...++..... . ...++..+++.+...|++++|...|+
T Consensus 101 ~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~-~~~~~~~LG~l~~~~~~~~~A~~~y~ 176 (497)
T d1ya0a1 101 FYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY---I-CQHCLVHLGDIARYRNQTSQAESYYR 176 (497)
T ss_dssp HHHHHHHHHTC-------------------------------CCHHHHH---H-HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC---C-HHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 3444444433333333344455666666666667766666666555432 1 12455566777777777777777777
Q ss_pred hcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhh
Q 036165 511 TMS-TEP-DLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 511 ~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 564 (566)
++. ..| +...|+.++..+...|+..+|...|.+++..+|..+.++.+|+.++.+
T Consensus 177 ~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 177 HAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 665 233 456677777777777777777777777777777777777777766643
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.15 E-value=0.00069 Score=59.18 Aligned_cols=198 Identities=10% Similarity=-0.005 Sum_probs=119.7
Q ss_pred HHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHh----
Q 036165 358 PACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAK----CGFISEARTLFDKMSE-RNTVTWNSMIFGCAN---- 428 (566)
Q Consensus 358 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~---- 428 (566)
..+...+++++|.+.|++..+.| +...+..|..+|.. ..+...|...+....+ .+......+...+..
T Consensus 10 ~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~ 86 (265)
T d1ouva_ 10 AKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGV 86 (265)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS
T ss_pred HHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhcccccccccccc
Confidence 33334444444444444444433 23333334444444 3456666666655443 233333334333332
Q ss_pred cCChHHHHHHHHHhhhcCCCCHHHHHHHHHHH--hccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCH
Q 036165 429 HGYCDEAIELFNQMEERKKLDHLSFTAVLTAC--CHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR----AGRL 502 (566)
Q Consensus 429 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~ 502 (566)
..+.+.|...++...+...+............ ........+...+...... .+...+..|...|.. ..+.
T Consensus 87 ~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~L~~~~~~~~~~~~~~ 162 (265)
T d1ouva_ 87 SQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL----NDGDGCTILGSLYDAGRGTPKDL 162 (265)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred chhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcc----cccchhhhhhhhhccCCCccccc
Confidence 35667788877777665333332222222222 2244566677777766543 456677778877775 4567
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhh
Q 036165 503 AEAYEMIKTMSTEPDLFVWGALLGACKN----HGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 503 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 564 (566)
..+..+++......+......+...|.. ..++++|+..|+++.+.+ ++.....||.+|..
T Consensus 163 ~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~ 226 (265)
T d1ouva_ 163 KKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYN 226 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHT
T ss_pred ccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHc
Confidence 7888888887756788888888877765 568999999999999886 78899999999864
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=2e-05 Score=60.50 Aligned_cols=58 Identities=12% Similarity=0.055 Sum_probs=32.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH
Q 036165 421 SMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE 478 (566)
Q Consensus 421 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 478 (566)
.+...+...|++++|+..|.+..+..+.+...+..+..+|...|++++|+..++++++
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555555555555555543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=5.9e-05 Score=61.17 Aligned_cols=79 Identities=8% Similarity=-0.125 Sum_probs=52.7
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHH
Q 036165 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGACK 529 (566)
Q Consensus 452 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~ 529 (566)
+|+.+..+|.+.|++++|+..++.++.. -+.++..+..++.+|...|++++|...|+++. ..| +..+...+.....
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 141 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 141 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhc--cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4666777777788888888888877765 13356677777788888888888888887776 334 4555555444444
Q ss_pred hcC
Q 036165 530 NHG 532 (566)
Q Consensus 530 ~~g 532 (566)
+.+
T Consensus 142 ~~~ 144 (170)
T d1p5qa1 142 RIR 144 (170)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=3.1e-06 Score=65.31 Aligned_cols=95 Identities=8% Similarity=-0.022 Sum_probs=68.9
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHH
Q 036165 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACK 529 (566)
Q Consensus 452 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~ 529 (566)
.+..+...+...|++++|+..|.++++. .+.+...+..+..+|.+.|++++|...+++++ .+.+...|..+..+|.
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3556677778888888888888888765 23456777778888888888888888887766 2234455667777788
Q ss_pred hcCCHHHHHHHHHHHhhhC
Q 036165 530 NHGNIELAEIAAKHLSELE 548 (566)
Q Consensus 530 ~~g~~~~A~~~~~~~~~~~ 548 (566)
+.|+...+...++.+++..
T Consensus 84 ~lg~~~~~~~~~~~A~~~~ 102 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFY 102 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 8888888888887777644
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.04 E-value=0.0039 Score=55.69 Aligned_cols=289 Identities=10% Similarity=0.027 Sum_probs=129.1
Q ss_pred CchHHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHc
Q 036165 111 RLTQIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACG 190 (566)
Q Consensus 111 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 190 (566)
++..-...+.+.|.+.|.++.|..+|..+.. |..++..+.+.+++..|.+++.+.. +..+|..+...|.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHH
Confidence 3444444555566666666666666664432 5556666666666666666655431 3445555555555
Q ss_pred ccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhhHHHHHHHHHHcCChhHHHHH
Q 036165 191 HLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMV---EKDIVAMNAMVSGYVQRGLATEALNL 267 (566)
Q Consensus 191 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~ 267 (566)
.......+ .+...+...+......++..|-..|.+++...+++... ..+...++.++..|++.+ .++..+.
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~ 154 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREH 154 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHH
Confidence 44443322 11122222333444455566666666666666666542 224445555555555543 2222222
Q ss_pred HHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 036165 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVHNFCNDEAFDTFKEMLSQGFC 347 (566)
Q Consensus 268 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 347 (566)
+..... ..|. ..++..|-+.+- |..++..|.+.|.++.|..+.-. + .
T Consensus 155 l~~~s~---~y~~---~k~~~~c~~~~l----------------------~~elv~Ly~~~~~~~~A~~~~i~---~--~ 201 (336)
T d1b89a_ 155 LELFWS---RVNI---PKVLRAAEQAHL----------------------WAELVFLYDKYEEYDNAIITMMN---H--P 201 (336)
T ss_dssp HHHHST---TSCH---HHHHHHHHTTTC----------------------HHHHHHHHHHTTCHHHHHHHHHH---S--T
T ss_pred HHhccc---cCCH---HHHHHHHHHcCC----------------------hHHHHHHHHhcCCHHHHHHHHHH---c--c
Confidence 222110 1111 112222222222 33344455556666665554322 1 2
Q ss_pred CCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 036165 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCA 427 (566)
Q Consensus 348 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 427 (566)
++.......+..+.+..+.+...++....++. ++...+.++......-+..+..+.+++
T Consensus 202 ~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~----~p~~i~~lL~~v~~~~d~~r~V~~~~k----------------- 260 (336)
T d1b89a_ 202 TDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHTRAVNYFSK----------------- 260 (336)
T ss_dssp TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH----CGGGHHHHHHHHGGGCCHHHHHHHHHH-----------------
T ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHc----CHHHHHHHHHHhccCCCHHHHHHHHHh-----------------
Confidence 33333344455556666666555555544442 223344455555555555555554443
Q ss_pred hcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 036165 428 NHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLF 473 (566)
Q Consensus 428 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 473 (566)
.++.......++..... .+....+++...|...++++.-.+..
T Consensus 261 -~~~l~li~p~Le~v~~~--n~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 261 -VKQLPLVKPYLRSVQNH--NNKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp -TTCTTTTHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -cCCcHHHHHHHHHHHHc--ChHHHHHHHHHHHhCcchhHHHHHHH
Confidence 33444444444443322 23456677777777777765544444
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.03 E-value=3.5e-06 Score=66.51 Aligned_cols=113 Identities=12% Similarity=0.010 Sum_probs=65.9
Q ss_pred hcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCC----------hHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 036165 428 NHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGL----------VELGQRLFNMMQEKYKIMPRTEHYACMVDLLG 497 (566)
Q Consensus 428 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 497 (566)
+.+.+++|...|++..+..|.+..++..+..++...++ +++|+..|+++.+. -+.+...|..++.+|.
T Consensus 9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--~P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--cchhhHHHhhHHHHHH
Confidence 44556777777777776666666677766666654332 34455555555543 1223344444444444
Q ss_pred hcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHh
Q 036165 498 RAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYA 563 (566)
Q Consensus 498 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 563 (566)
..|++. ++... ..+++++|.+.|+++++++|++..++..|+....
T Consensus 87 ~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~k 131 (145)
T d1zu2a1 87 SFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAK 131 (145)
T ss_dssp HHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred Hcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHH
Confidence 333210 11000 1124688999999999999999998888876543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.95 E-value=1.5e-05 Score=69.76 Aligned_cols=126 Identities=15% Similarity=0.069 Sum_probs=96.0
Q ss_pred HHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHH
Q 036165 426 CANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR-TEHYACMVDLLGRAGRLAE 504 (566)
Q Consensus 426 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 504 (566)
..+.|++++|+..+++..+..|.|...+..++..++..|++++|.+.++...+. .|+ ...+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccHH
Confidence 346799999999999999998999999999999999999999999999999875 454 4455556666655555555
Q ss_pred HHHHHHhcC--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchH
Q 036165 505 AYEMIKTMS--TEPD-LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAAN 554 (566)
Q Consensus 505 A~~~~~~~~--~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 554 (566)
+..-..... ..|+ ...+......+...|+.++|...++++.+..|+.+..
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 544333322 2232 3333444566889999999999999999999988754
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.90 E-value=0.00018 Score=58.03 Aligned_cols=94 Identities=5% Similarity=-0.102 Sum_probs=63.6
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC-CHHHHHHHHHHHH
Q 036165 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS-TEP-DLFVWGALLGACK 529 (566)
Q Consensus 452 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~ 529 (566)
.|+.+..++.+.|++++|+..++.+... -+.+...|..+..+|...|++++|...|+++. ..| +..++..+.....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 143 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhc--ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4666777788888888888888888765 24466777788888888888888888888876 344 4555555554444
Q ss_pred hcCCH-HHHHHHHHHHhhh
Q 036165 530 NHGNI-ELAEIAAKHLSEL 547 (566)
Q Consensus 530 ~~g~~-~~A~~~~~~~~~~ 547 (566)
+.+.. +...+.+.+|++.
T Consensus 144 ~~~~~~e~~kk~~~~~f~~ 162 (168)
T d1kt1a1 144 KAKEHNERDRRTYANMFKK 162 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhh
Confidence 44433 3455666666653
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.87 E-value=7.9e-05 Score=59.39 Aligned_cols=93 Identities=16% Similarity=0.001 Sum_probs=60.1
Q ss_pred HHHhccCChHHHHHHHHHhHHhcCCCCC----------hhHHHHHHHHHHhcCCHHHHHHHHHhcC--------CCCC--
Q 036165 458 TACCHVGLVELGQRLFNMMQEKYKIMPR----------TEHYACMVDLLGRAGRLAEAYEMIKTMS--------TEPD-- 517 (566)
Q Consensus 458 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~-- 517 (566)
......|++++|++.|++.++...-.|+ ...|+.+..+|.+.|++++|...+++.. ..++
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~ 96 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 96 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence 3445556666666666666653222222 2456667777777777777777766654 1122
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC
Q 036165 518 ---LFVWGALLGACKNHGNIELAEIAAKHLSELEPE 550 (566)
Q Consensus 518 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 550 (566)
..++..+..+|...|++++|+..|++++++.|+
T Consensus 97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 97 KLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 224667778889999999999999998876543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.87 E-value=9.2e-05 Score=59.96 Aligned_cols=75 Identities=9% Similarity=-0.121 Sum_probs=39.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHH
Q 036165 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGAC 528 (566)
Q Consensus 452 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~ 528 (566)
.|..+..++.+.|++++|+..++++++. -+.++..|..++.+|.+.|++++|...|+++. .+.+..+...+..+.
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~--~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhh--hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4455555555666666666666655542 12234555555566666666666666655554 223344444444433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=2.2e-06 Score=83.55 Aligned_cols=132 Identities=10% Similarity=0.003 Sum_probs=68.5
Q ss_pred hHHHHHHHHHhhhc-CCCCHHHHHHHHH--HHhccCChHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHH
Q 036165 432 CDEAIELFNQMEER-KKLDHLSFTAVLT--ACCHVGLVELGQRLFNMMQEKYKIMP-RTEHYACMVDLLGRAGRLAEAYE 507 (566)
Q Consensus 432 ~~~A~~~~~~~~~~-~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 507 (566)
+..+.+.+++..+. ..++..-...... .....+.++.++..+.... ++.| +...+..+...+.+.|+.++|..
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~---~l~~~~~~~~~~lg~~~~~~~~~~~A~~ 141 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVF---NVDLPCRVKSSQLGIISNKQTHTSAIVK 141 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCChhhHHHHHHhHHHHHhCCCHHHHHH
Confidence 34556666665554 2333322222111 1223455566655555443 3333 45677788889999999999988
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhhcC
Q 036165 508 MIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNMLLTDLYANAG 566 (566)
Q Consensus 508 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 566 (566)
.+++........++..++..+...|++++|+..|+++++++|++...|..||.+|...|
T Consensus 142 ~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~ 200 (497)
T d1ya0a1 142 PQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKG 200 (497)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcC
Confidence 87766521123567888899999999999999999999999999999999999998765
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.78 E-value=0.00024 Score=56.18 Aligned_cols=60 Identities=10% Similarity=-0.179 Sum_probs=42.6
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 452 SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 452 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
+|+.+..++.+.|++++|++.++.+.+. .+.+...|..++.+|...|++++|...|++..
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~--~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al 128 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAA 128 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccc--cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHH
Confidence 4566677777777777777777777764 23456677777777777777777777777766
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.72 E-value=0.0003 Score=57.18 Aligned_cols=74 Identities=9% Similarity=0.037 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHH----hcCCCCChhHH
Q 036165 416 TVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQE----KYKIMPRTEHY 489 (566)
Q Consensus 416 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~ 489 (566)
...+..+...+...|++++|+..++++.+..+.+...|..++.++...|+.++|++.|+++.. ..|+.|+..+-
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 345677888888999999999999999988888889999999999999999999999888743 24888887653
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.59 E-value=2.6e-05 Score=61.30 Aligned_cols=70 Identities=10% Similarity=-0.006 Sum_probs=46.1
Q ss_pred HhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHh----------cCCHHHHHHHHHHHhhhCCCCchHHHHHHHHHhh
Q 036165 497 GRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKN----------HGNIELAEIAAKHLSELEPESAANNMLLTDLYAN 564 (566)
Q Consensus 497 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 564 (566)
.+.+.+++|...++++. .+.+..++..+..++.. .+.+++|+..++++++++|+++.++..+|.+|..
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 34444555555555554 22344455555544442 2445789999999999999999999999999876
Q ss_pred cC
Q 036165 565 AG 566 (566)
Q Consensus 565 ~g 566 (566)
+|
T Consensus 88 ~g 89 (145)
T d1zu2a1 88 FA 89 (145)
T ss_dssp HH
T ss_pred cc
Confidence 53
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.57 E-value=0.0015 Score=52.88 Aligned_cols=56 Identities=13% Similarity=0.065 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036165 489 YACMVDLLGRAGRLAEAYEMIKTMS--TEPDLFVWGALLGACKNHGNIELAEIAAKHL 544 (566)
Q Consensus 489 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 544 (566)
+..++.++.+.|++++|...++++. .+-+...|..++.+|.+.|+.++|++.|+++
T Consensus 70 ~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 70 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3444444555555555555555444 2224444555555555555555555555544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.16 E-value=0.0015 Score=51.57 Aligned_cols=96 Identities=14% Similarity=0.031 Sum_probs=69.4
Q ss_pred HHHHH--HHHHHhcCChHHHHHHHHHhhhc--CCCC----------HHHHHHHHHHHhccCChHHHHHHHHHhHHhc---
Q 036165 418 TWNSM--IFGCANHGYCDEAIELFNQMEER--KKLD----------HLSFTAVLTACCHVGLVELGQRLFNMMQEKY--- 480 (566)
Q Consensus 418 ~~~~l--~~~~~~~~~~~~A~~~~~~~~~~--~~~~----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--- 480 (566)
+|..+ ...+...|++++|+..|++..+. ..|+ ...|+.+..++.+.|++++|...+++....+
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 44444 34455678888888888888765 2222 3468888999999999999999988877531
Q ss_pred -CCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 481 -KIMPR-----TEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 481 -~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
...++ ...+..+..+|...|++++|...|+++.
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11222 2356778899999999999999998875
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.04 E-value=0.00072 Score=58.66 Aligned_cols=118 Identities=13% Similarity=0.015 Sum_probs=56.2
Q ss_pred ccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCChhHHHHH
Q 036165 191 HLSDIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEK---DIVAMNAMVSGYVQRGLATEALNL 267 (566)
Q Consensus 191 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~ 267 (566)
+.|++++|.+.+++.++.. +.+...+..+...++..|++++|.+.|+...+. +...+..+...+...+..+++..-
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~ 86 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQG 86 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHH
Confidence 4566666666666666653 445556666666666666666666666666332 222333333333322222222211
Q ss_pred HHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036165 268 VEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAK 309 (566)
Q Consensus 268 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 309 (566)
...-...+-+++...+......+...|+.++|.+.++++.+.
T Consensus 87 ~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 87 AATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp CCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 111111111222233333444555566666666666665543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.74 E-value=0.0058 Score=43.16 Aligned_cols=59 Identities=7% Similarity=-0.067 Sum_probs=29.0
Q ss_pred HHHHHHhccCChHHHHHHHHHhHHhcCCC----CC-hhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 036165 455 AVLTACCHVGLVELGQRLFNMMQEKYKIM----PR-TEHYACMVDLLGRAGRLAEAYEMIKTMS 513 (566)
Q Consensus 455 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (566)
.+...+.+.|++++|+..|+++.+..... ++ ..++..|..+|.+.|++++|.+.++++.
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL 73 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHH
Confidence 44445555555555555555544321110 11 2345555555555556666555555554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.46 E-value=0.022 Score=41.61 Aligned_cols=80 Identities=11% Similarity=-0.026 Sum_probs=61.4
Q ss_pred CCChhHHHHHHHHHHhcCC---HHHHHHHHHhcC-CCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCchHHH
Q 036165 483 MPRTEHYACMVDLLGRAGR---LAEAYEMIKTMS-TEP-D-LFVWGALLGACKNHGNIELAEIAAKHLSELEPESAANNM 556 (566)
Q Consensus 483 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~-~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 556 (566)
.++..+--.+..++.+..+ .+++..++++.. ..| + ...+..|.-+|.+.|++++|.+.++++++++|++..+..
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~ 111 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 111 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence 3556666777888887654 457888888776 234 3 356778888899999999999999999999999998876
Q ss_pred HHHHHH
Q 036165 557 LLTDLY 562 (566)
Q Consensus 557 ~l~~~~ 562 (566)
...-|-
T Consensus 112 L~~~Ie 117 (124)
T d2pqrb1 112 LKSMVE 117 (124)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.14 E-value=0.13 Score=36.94 Aligned_cols=85 Identities=14% Similarity=-0.006 Sum_probs=62.5
Q ss_pred hcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHh
Q 036165 397 KCGFISEARTLFDKMSERNTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMM 476 (566)
Q Consensus 397 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 476 (566)
+++++......+-.+.. +...++..+....++|+-+.-.++++.+.+...+++.....+..+|.+.|...++.+++.++
T Consensus 68 ~C~Nlk~vv~C~~~~n~-~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~A 146 (161)
T d1wy6a1 68 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEA 146 (161)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 34555555555544432 33445666778888898888889988887788888888889999999999999999999988
Q ss_pred HHhcCCC
Q 036165 477 QEKYKIM 483 (566)
Q Consensus 477 ~~~~~~~ 483 (566)
.++ |+.
T Consensus 147 Ce~-G~K 152 (161)
T d1wy6a1 147 CKK-GEK 152 (161)
T ss_dssp HHT-TCH
T ss_pred HHH-hHH
Confidence 887 653
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.02 E-value=0.085 Score=39.54 Aligned_cols=111 Identities=11% Similarity=-0.086 Sum_probs=76.3
Q ss_pred ChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHH
Q 036165 431 YCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGR----AGRLAEAY 506 (566)
Q Consensus 431 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 506 (566)
++++|.++|++..+...+.. ...|. .....+.++|.+.+++..+. | ++.....|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~~~a--~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEMFG--CLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCTTH--HHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhh--hhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHHHH
Confidence 56778888887776543322 22232 23456788888888888775 4 44555566666654 45788999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhCC
Q 036165 507 EMIKTMSTEPDLFVWGALLGACKN----HGNIELAEIAAKHLSELEP 549 (566)
Q Consensus 507 ~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p 549 (566)
++|++....-++.....|...|.. ..+.++|.+.++++.+.+.
T Consensus 80 ~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 80 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 999888756667777777777765 4588999999999888763
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.93 E-value=0.65 Score=43.02 Aligned_cols=389 Identities=9% Similarity=-0.045 Sum_probs=191.4
Q ss_pred HHHhhcCChHHHHHHhccCCCCCcchHHHHHHHHH--hcCChHHHHHHHHHhHHCCCCCCcchH----HHHHHHHcccCC
Q 036165 121 TFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYA--RRGYHQEAVTVFHEMHIQGLKQNIFVI----PSVLKACGHLSD 194 (566)
Q Consensus 121 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~ll~~~~~~~~ 194 (566)
.-..+.|+...+.++...+..--...|-..-..-. ......+...++++ .|+...- ...+..+.+.++
T Consensus 14 ~~a~~~~~~~~~~~~~~~L~dypL~pYl~~~~l~~~~~~~~~~~i~~Fl~~------~p~~P~~~~lr~~~l~~L~~~~~ 87 (450)
T d1qsaa1 14 KQAWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFVRA------NPTLPPARTLQSRFVNELARRED 87 (450)
T ss_dssp HHHHHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTGGGCCHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHhhhcCCCCHHHHHHHHHHhccccCCHHHHHHHHHH------CCCChhHHHHHHHHHHHHHhccC
Confidence 33456688888888888775311222322221111 23344444444433 2333222 233455566666
Q ss_pred hhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc---CCCChhhHHHHHHHHHHcCChhHHH--HHHH
Q 036165 195 IGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEM---VEKDIVAMNAMVSGYVQRGLATEAL--NLVE 269 (566)
Q Consensus 195 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~--~~~~ 269 (566)
++...+.+ ...+.+...-..+..+....|+.+.|.+.+..+ .......+..+...+.+.|...... .-++
T Consensus 88 w~~~~~~~-----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~ 162 (450)
T d1qsaa1 88 WRGLLAFS-----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIR 162 (450)
T ss_dssp HHHHHHHC-----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHhc-----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 65533322 122344555556777777888888888777766 1123334444544444444332111 1111
Q ss_pred HhhhCC-----------CCccH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh--cCChhHHH
Q 036165 270 EIGTPR-----------VKPNV-VTWNTLISGFSKSGDQVMVSKLFQLMRAKGVEPDVVSWTSVISGLVH--NFCNDEAF 335 (566)
Q Consensus 270 ~m~~~~-----------~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~ 335 (566)
.+...| ++++. ......+........+ .. .... ...+......+..++.+ ..+.+.|.
T Consensus 163 ~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~---~~---~~~~--~~~~~~~~~~~~~~l~rla~~d~~~a~ 234 (450)
T d1qsaa1 163 LAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LT---FART--TGATDFTRQMAAVAFASVARQDAENAR 234 (450)
T ss_dssp HHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HH---HHHH--SCCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhH---HH---HHhc--CCCChhhhHHHHHHHHHHhccChhHHH
Confidence 111111 01111 1111111111111111 10 0011 11222222222333322 35677777
Q ss_pred HHHHHHHHCCCCCCHHHHH----HHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036165 336 DTFKEMLSQGFCPTSATIS----SILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKM 411 (566)
Q Consensus 336 ~~~~~m~~~~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 411 (566)
..+....... ..+..... .+.......+..+.+..........+. +.......+......+++..+...++.+
T Consensus 235 ~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~l 311 (450)
T d1qsaa1 235 LMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLNTWLARL 311 (450)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHHHHHHHhc
Confidence 7777765543 22222222 222223344556667666666555433 3334444555556677888888888877
Q ss_pred CCC---ChhHHHHHHHHHHhcCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCC-hh
Q 036165 412 SER---NTVTWNSMIFGCANHGYCDEAIELFNQMEERKKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPR-TE 487 (566)
Q Consensus 412 ~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~ 487 (566)
... .....-=+..++...|+.++|...|..+.. .++ |-..+.+ .+.|..-. +... ..+.+ ..
T Consensus 312 ~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~--~~~---fYG~LAa-~~Lg~~~~-------~~~~-~~~~~~~~ 377 (450)
T d1qsaa1 312 PMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--QRG---FYPMVAA-QRIGEEYE-------LKID-KAPQNVDS 377 (450)
T ss_dssp CTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCS---HHHHHHH-HHTTCCCC-------CCCC-CCCSCCCC
T ss_pred CcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc--CCC---hHHHHHH-HHcCCCCC-------CCcC-CCCccHHH
Confidence 641 122223356777788888888888887754 222 3333322 11221000 0000 00000 00
Q ss_pred H-----HHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 036165 488 H-----YACMVDLLGRAGRLAEAYEMIKTMSTEPDLFVWGALLGACKNHGNIELAEIAAKHLS 545 (566)
Q Consensus 488 ~-----~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 545 (566)
. -..-+..+...|...+|...+..+....+......+.....+.|.++.|+....++.
T Consensus 378 ~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 378 ALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred hhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCCCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 1 112356677889999999988877756677788888888899999999998887764
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.18 E-value=0.34 Score=34.82 Aligned_cols=63 Identities=16% Similarity=0.154 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhhhCCCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 036165 248 MNAMVSGYVQRGLATEALNLVEEIGTPRVKPNVVTWNTLISGFSKSGDQVMVSKLFQLMRAKGV 311 (566)
Q Consensus 248 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 311 (566)
.+..++.+.++|+-++-.++++.+.+.+ +|++.....+..+|-+.|+..++.+++.+..+.|+
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 4445566666666666666666655433 55566666666677777777777776666666654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.77 E-value=1.5 Score=40.31 Aligned_cols=359 Identities=11% Similarity=0.043 Sum_probs=210.7
Q ss_pred HHHHHHHHHHhhcCChHHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccC
Q 036165 114 QIATKLITFYTECQNIHHARMLFDEIPKTNIHRWIALTGAYARRGYHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLS 193 (566)
Q Consensus 114 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 193 (566)
.+....+..+++.+++......+...+ .+...-.....+....|+...|...+..+...|.. .
T Consensus 73 ~lr~~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~--------------- 135 (450)
T d1qsaa1 73 TLQSRFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-Q--------------- 135 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-C---------------
T ss_pred HHHHHHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-C---------------
Confidence 334555677888899888777665433 24444556777888899999999988888765422 2
Q ss_pred ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCChhHHHHHHHHhhh
Q 036165 194 DIGTGEKIHSLVLKHSFGTDAFVVSSLIDMYSKCGSVEKAKKVFDEMVEKDIVAMNAMVSGYVQRGLATEALNLVEEIGT 273 (566)
Q Consensus 194 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 273 (566)
.+....++..+.+.| ..+...+-.-+......|+...|..+...+...........+..... ...+.......
T Consensus 136 -p~~c~~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~~~~-- 208 (450)
T d1qsaa1 136 -PNACDKLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTT-- 208 (450)
T ss_dssp -CTHHHHHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHS--
T ss_pred -chHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHHhcC--
Confidence 223334444445444 34444444456666777899999998888765554455555544332 22333222221
Q ss_pred CCCCccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCCCChhhHHHHH----HHHHhcCChhHHHHHHHHHHHCCCC
Q 036165 274 PRVKPNVVTWNTLISGFSK--SGDQVMVSKLFQLMRAKGVEPDVVSWTSVI----SGLVHNFCNDEAFDTFKEMLSQGFC 347 (566)
Q Consensus 274 ~~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~~~~ 347 (566)
.++......+..++.+ ..+.+.+..++......... +...+..+- ......+..+.+...+......+
T Consensus 209 ---~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~-- 282 (450)
T d1qsaa1 209 ---GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS-- 282 (450)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--
T ss_pred ---CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--
Confidence 2222222223333332 34777888888877654322 222222222 22234566777888777776553
Q ss_pred CCHHHHHHHHHHHHccCchHHHHHHHHHHHHhCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 036165 348 PTSATISSILPACASAANMRRGKEIHGCAIVMGVEGDLHVRSALVDMYAKCGFISEARTLFDKMSERNTVTWNSMIFGCA 427 (566)
Q Consensus 348 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 427 (566)
.+.......+......+++..+...+..+.... .....-.--+..++...|+.++|...|....... +|-..+.+-
T Consensus 283 ~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~--~fYG~LAa~- 358 (450)
T d1qsaa1 283 QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQR--GFYPMVAAQ- 358 (450)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SHHHHHHHH-
T ss_pred cchHHHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCC--ChHHHHHHH-
Confidence 344444455555667788888888877664321 1123444567888999999999999999887642 344433322
Q ss_pred hcCCh-HHHHHHHHHhhhcCCCCH-H---HHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH
Q 036165 428 NHGYC-DEAIELFNQMEERKKLDH-L---SFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVDLLGRAGRL 502 (566)
Q Consensus 428 ~~~~~-~~A~~~~~~~~~~~~~~~-~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 502 (566)
+.|.. .-.. .-.. ..+.. . .-..-+..+...|....|...+..+... . +......+.....+.|.+
T Consensus 359 ~Lg~~~~~~~----~~~~-~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~--~--~~~~~~~la~lA~~~g~~ 429 (450)
T d1qsaa1 359 RIGEEYELKI----DKAP-QNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS--K--SKTEQAQLARYAFNNQWW 429 (450)
T ss_dssp HTTCCCCCCC----CCCC-SCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C--CHHHHHHHHHHHHHTTCH
T ss_pred HcCCCCCCCc----CCCC-ccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC--C--CHHHHHHHHHHHHHCCCh
Confidence 22211 0000 0000 00010 0 1123355677889999999999888753 2 455667788889999999
Q ss_pred HHHHHHHHhcCCC
Q 036165 503 AEAYEMIKTMSTE 515 (566)
Q Consensus 503 ~~A~~~~~~~~~~ 515 (566)
+.|.....+....
T Consensus 430 ~~aI~a~~~~~~~ 442 (450)
T d1qsaa1 430 DLSVQATIAGKLW 442 (450)
T ss_dssp HHHHHHHHHTTCT
T ss_pred hHHHHHHHHHHcc
Confidence 9999988887633
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.49 E-value=0.61 Score=34.48 Aligned_cols=46 Identities=9% Similarity=-0.054 Sum_probs=23.7
Q ss_pred ChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHHcC
Q 036165 159 YHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLKHS 209 (566)
Q Consensus 159 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 209 (566)
|+++|++.|++..+.|. ......+. .....+.++|.+.+++..+.|
T Consensus 8 d~~~A~~~~~kaa~~g~---~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g 53 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE---MFGCLSLV--SNSQINKQKLFQYLSKACELN 53 (133)
T ss_dssp HHHHHHHHHHHHHHTTC---TTHHHHHH--TCTTSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCCC---hhhhhhhc--cccccCHHHHHHHHhhhhccc
Confidence 55667777777666552 22222222 223345566666666665554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.84 E-value=2.3 Score=30.53 Aligned_cols=69 Identities=13% Similarity=0.022 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHHHhccC---ChHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCC
Q 036165 447 KLDHLSFTAVLTACCHVG---LVELGQRLFNMMQEKYKIMPRT-EHYACMVDLLGRAGRLAEAYEMIKTMS-TEPD 517 (566)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~ 517 (566)
.+...|-..+..++.++. +.++++.+++.+... + +.+. ..+-.|.-+|.+.|++++|.+.++++. ..|+
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~ 105 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-A-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 105 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-C-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-C-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 345556666666666554 456788888887754 2 2232 566677788888889999988888877 4454
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.81 E-value=3.1 Score=28.13 Aligned_cols=61 Identities=18% Similarity=0.230 Sum_probs=41.3
Q ss_pred hHHHHHHHHHhhhc-CCCCHHHHHHHHHHHhccCChHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 036165 432 CDEAIELFNQMEER-KKLDHLSFTAVLTACCHVGLVELGQRLFNMMQEKYKIMPRTEHYACMVD 494 (566)
Q Consensus 432 ~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 494 (566)
.-++.+-+..+... ..|++....+.+++|-+.+++..|.++++.++.+ ..++...|..+++
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K--~~~~k~~y~yilq 83 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 83 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCcHHHHHHHHH
Confidence 34455555665555 6778888888888888888888888888887765 2334556665543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.59 E-value=2.8 Score=28.38 Aligned_cols=49 Identities=20% Similarity=0.226 Sum_probs=29.3
Q ss_pred ChHHHHHHHHHhHHCCCCCCcchHHHHHHHHcccCChhHHHHHHHHHHH
Q 036165 159 YHQEAVTVFHEMHIQGLKQNIFVIPSVLKACGHLSDIGTGEKIHSLVLK 207 (566)
Q Consensus 159 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 207 (566)
+.-++.+-++.+......|++....+.+++|.+.+++..|.++++-+..
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3345555555555555666666666666666666666666666665543
|