Citrus Sinensis ID: 036179
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 339 | ||||||
| 359477817 | 670 | PREDICTED: cysteine-rich receptor-like p | 0.873 | 0.441 | 0.359 | 3e-45 | |
| 147776074 | 815 | hypothetical protein VITISV_005300 [Viti | 0.817 | 0.339 | 0.356 | 3e-42 | |
| 358347848 | 671 | Cysteine-rich receptor-like protein kina | 0.923 | 0.466 | 0.335 | 6e-42 | |
| 358347946 | 552 | Cysteine-rich receptor-like protein kina | 0.923 | 0.567 | 0.335 | 7e-42 | |
| 255555021 | 686 | ATP binding protein, putative [Ricinus c | 0.970 | 0.479 | 0.321 | 3e-41 | |
| 359474717 | 663 | PREDICTED: cysteine-rich receptor-like p | 0.923 | 0.472 | 0.339 | 4e-41 | |
| 255555035 | 671 | ATP binding protein, putative [Ricinus c | 0.929 | 0.469 | 0.327 | 3e-40 | |
| 357444315 | 562 | Cysteine-rich receptor-like protein kina | 0.911 | 0.549 | 0.334 | 1e-39 | |
| 357444313 | 801 | Cysteine-rich receptor-like protein kina | 0.914 | 0.387 | 0.332 | 1e-39 | |
| 357444317 | 673 | Cysteine-rich receptor-like protein kina | 0.914 | 0.460 | 0.332 | 1e-39 |
| >gi|359477817|ref|XP_003632027.1| PREDICTED: cysteine-rich receptor-like protein kinase 25-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 132/367 (35%), Positives = 177/367 (48%), Gaps = 71/367 (19%)
Query: 15 YVYHFCPPENNTAAGGL-FMYKVGALFRGKLYNEAGRYLYYNATEGVDPNKVYGLYHCYF 73
++Y FC NN+ AG F +GAL L NE G + EG DP+KVYGL+ C
Sbjct: 30 FLYTFC--NNNSHAGSTKFQSNLGALLSRSLNNEGGISSFSMVYEGEDPDKVYGLFLCRP 87
Query: 74 RLQSNT-----------IVTNCTGAKEAIVWYDQCMVRFSNSSFALSLETAPTVYAWNIM 122
+ + IV C KEAI+WY++C +R+SN SF +LE PT+Y WN
Sbjct: 88 DVSKHICQSCIDAATLKIVQVCQHKKEAIIWYNECFLRYSNRSFFSNLEMKPTLYMWNTQ 147
Query: 123 NVTDRYKFSNIVGQSFSDLIQNVTSRHSNSKYPAAAQTVNASSFVKLYTLVQCIPYLSKP 182
N + KF +G+ F QN+T++ ++S A V S+F+ LY +VQC L
Sbjct: 148 NASAPDKFDQKLGEMF----QNLTAQATSSDDMYAIGQVEVSNFLNLYGIVQCTRDLRMS 203
Query: 183 DCNVCLPGALAQIPACCSGKQGGRVLTPSCNIRYERYPFFAPISPPNKKNGSSATAPISP 242
C CL + IP GKQGGRVL PSC IRYE YPF A P + + + ISP
Sbjct: 204 YCRRCLDEVVGYIPNFMEGKQGGRVLAPSCYIRYEVYPFAAVEDPVVE---AQVPSSISP 260
Query: 243 PNKKNGSSDGSGKKKTKESRTWIAIGATASSIIVLVLSSFLLWRIKRRK----------- 291
+K +KTK WIA G + S I+V+ + + I+RRK
Sbjct: 261 RGRKG--------RKTK----WIATGTSLSGIVVVAFCVY--YVIRRRKGADPEEKESKG 306
Query: 292 -------------------ERVKGNVWHYKMVELPTTIRMTFYEDRSIQATQHFSDENKL 332
E ++G++ K E P YE ATQHFS++NKL
Sbjct: 307 DLCLLDLGGGRLDAEDYSSETLQGDMLA-KSKEFPVIGFDIVYE-----ATQHFSNDNKL 360
Query: 333 GEGGFGP 339
GEGGFGP
Sbjct: 361 GEGGFGP 367
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147776074|emb|CAN65425.1| hypothetical protein VITISV_005300 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|358347848|ref|XP_003637963.1| Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|355503898|gb|AES85101.1| Cysteine-rich receptor-like protein kinase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|358347946|ref|XP_003638011.1| Cysteine-rich receptor-like protein kinase, partial [Medicago truncatula] gi|355503946|gb|AES85149.1| Cysteine-rich receptor-like protein kinase, partial [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|255555021|ref|XP_002518548.1| ATP binding protein, putative [Ricinus communis] gi|223542393|gb|EEF43935.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|359474717|ref|XP_002267916.2| PREDICTED: cysteine-rich receptor-like protein kinase 25-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255555035|ref|XP_002518555.1| ATP binding protein, putative [Ricinus communis] gi|223542400|gb|EEF43942.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|357444315|ref|XP_003592435.1| Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|355481483|gb|AES62686.1| Cysteine-rich receptor-like protein kinase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|357444313|ref|XP_003592434.1| Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|355481482|gb|AES62685.1| Cysteine-rich receptor-like protein kinase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|357444317|ref|XP_003592436.1| Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|355481484|gb|AES62687.1| Cysteine-rich receptor-like protein kinase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 339 | ||||||
| TAIR|locus:2115728 | 675 | CRK25 "cysteine-rich RLK (RECE | 0.935 | 0.469 | 0.283 | 6.5e-33 | |
| TAIR|locus:2121676 | 669 | CRK10 "cysteine-rich RLK (RECE | 0.687 | 0.348 | 0.288 | 1.2e-26 | |
| TAIR|locus:2031341 | 324 | AT1G63550 [Arabidopsis thalian | 0.681 | 0.712 | 0.308 | 3.2e-26 | |
| TAIR|locus:2141762 | 665 | CRK26 "cysteine-rich RLK (RECE | 0.740 | 0.377 | 0.312 | 4.4e-26 | |
| TAIR|locus:2095662 | 252 | AT3G22060 "AT3G22060" [Arabido | 0.616 | 0.829 | 0.305 | 5.9e-25 | |
| TAIR|locus:2123111 | 669 | CRK34 "cysteine-rich RLK (RECE | 0.489 | 0.248 | 0.309 | 2.8e-23 | |
| TAIR|locus:2121626 | 830 | CRK23 "cysteine-rich RLK (RECE | 0.663 | 0.271 | 0.286 | 4.5e-23 | |
| TAIR|locus:2127323 | 642 | CRK27 "cysteine-rich RLK (RECE | 0.702 | 0.370 | 0.304 | 2.5e-22 | |
| TAIR|locus:2031311 | 284 | AT1G63570 "AT1G63570" [Arabido | 0.690 | 0.823 | 0.268 | 2.6e-22 | |
| TAIR|locus:2155130 | 287 | AT5G41290 [Arabidopsis thalian | 0.648 | 0.766 | 0.287 | 4.9e-21 |
| TAIR|locus:2115728 CRK25 "cysteine-rich RLK (RECEPTOR-like protein kinase) 25" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 366 (133.9 bits), Expect = 6.5e-33, P = 6.5e-33
Identities = 98/346 (28%), Positives = 147/346 (42%)
Query: 11 SDSNYVYHFCPPENNTAAGGLFMYKVGALFRG-KLYNEAGRYLYYNATEGV--DPNKVYG 67
SD Y+YH CP + ++ + + N A L+ NA G D N+VYG
Sbjct: 25 SDPTYLYHICPNTTTYSRNSSYLTNLRTVLSSLSSPNAAYASLFDNAAAGEENDSNRVYG 84
Query: 68 LYHCY-----------FRLQSNTIVTNCTGAKEAIVWYDQCMVRFSNSSFALSLETAPTV 116
++ C +N + C K A++WYD+CMVR+SN S + P V
Sbjct: 85 VFLCRGDVSAEICRDCVAFAANETLQRCPREKVAVIWYDECMVRYSNQSIVGQMRIRPGV 144
Query: 117 YAWNIMNVTDRYKFSNIVGQSFSDLIQNVTSRHSNSKYPAAAQTVNASSFVKLYTLVQCI 176
+ N N+T+ + S +S L+ +V + + S A + N + F +Y+LVQC
Sbjct: 145 FLTNKQNITEN-QVSRF-NESLPALLIDVAVKAALSSRKFATEKANFTVFQTIYSLVQCT 202
Query: 177 PYLSKPDCNVCLPGALAQIPACCSGKQGGRVLTPSCNIRYERYPFFAPISPPNKKNGSSA 236
P L+ DC CL + +P CC GGRV+ PSC+ RYE YPF+ N + A
Sbjct: 203 PDLTNQDCESCLRQVINYLPRCCDRSVGGRVIAPSCSFRYELYPFY---------NETIA 253
Query: 237 TAPISPPNXXXXXX---XXXXXXXXXESRTWIAIGATAXXXXXXXXXXXXXWRI-KRRKE 292
AP++PP ++ T I W + +RR
Sbjct: 254 AAPMAPPPSSTVTAPPLNIPSEKGKGKNLTVIVTAIAVPVSVCVLLLGAMCWLLARRRNN 313
Query: 293 RVKGNVWHYKMVELPTTIRMTFYEDRSIQATQHFSDENKLGEGGFG 338
++ + +T + F AT FS+ NKLG GGFG
Sbjct: 314 KLSAETEDLDEDGITSTETLQFQFSAIEAATNKFSESNKLGHGGFG 359
|
|
| TAIR|locus:2121676 CRK10 "cysteine-rich RLK (RECEPTOR-like protein kinase) 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2031341 AT1G63550 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2141762 CRK26 "cysteine-rich RLK (RECEPTOR-like protein kinase) 26" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2095662 AT3G22060 "AT3G22060" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2123111 CRK34 "cysteine-rich RLK (RECEPTOR-like protein kinase) 34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2121626 CRK23 "cysteine-rich RLK (RECEPTOR-like protein kinase) 23" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2127323 CRK27 "cysteine-rich RLK (RECEPTOR-like protein kinase) 27" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2031311 AT1G63570 "AT1G63570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2155130 AT5G41290 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00020409001 | SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (654 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 339 | |||
| pfam01657 | 106 | pfam01657, Stress-antifung, Salt stress response/a | 5e-16 | |
| pfam01657 | 106 | pfam01657, Stress-antifung, Salt stress response/a | 7e-12 |
| >gnl|CDD|216632 pfam01657, Stress-antifung, Salt stress response/antifungal | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 5e-16
Identities = 29/86 (33%), Positives = 48/86 (55%)
Query: 136 QSFSDLIQNVTSRHSNSKYPAAAQTVNASSFVKLYTLVQCIPYLSKPDCNVCLPGALAQI 195
+ + L+ +++S ++S A + ++ +Y L QC LS DC CL A++++
Sbjct: 21 SNLNALLSSLSSNAASSSGKGFAAGTSGAAPDTVYGLAQCRGDLSASDCRSCLATAVSEL 80
Query: 196 PACCSGKQGGRVLTPSCNIRYERYPF 221
CC K+GGR+ SC +RYE YPF
Sbjct: 81 RRCCPNKKGGRIWYDSCFLRYESYPF 106
|
This domain is often found in association with the kinase domains pfam00069 or pfam07714. In many proteins it is duplicated. It contains six conserved cysteines which are involved in disulphide bridges. It has a role in salt stress response and has antifungal activity. Length = 106 |
| >gnl|CDD|216632 pfam01657, Stress-antifung, Salt stress response/antifungal | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 339 | |||
| PF01657 | 106 | Stress-antifung: Salt stress response/antifungal; | 99.9 | |
| PF01657 | 106 | Stress-antifung: Salt stress response/antifungal; | 99.86 | |
| KOG1187 | 361 | consensus Serine/threonine protein kinase [Signal | 96.99 | |
| PF08693 | 40 | SKG6: Transmembrane alpha-helix domain; InterPro: | 94.31 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 93.63 | |
| KOG3653 | 534 | consensus Transforming growth factor beta/activin | 93.0 | |
| PF04478 | 154 | Mid2: Mid2 like cell wall stress sensor; InterPro: | 91.31 | |
| PF06697 | 278 | DUF1191: Protein of unknown function (DUF1191); In | 88.26 | |
| PTZ00382 | 96 | Variant-specific surface protein (VSP); Provisiona | 82.09 | |
| PF15102 | 146 | TMEM154: TMEM154 protein family | 80.26 |
| >PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.1e-24 Score=168.02 Aligned_cols=101 Identities=38% Similarity=0.663 Sum_probs=76.4
Q ss_pred EEEe---eccc-CChhHHHHHHHHHHHHHHHHhhcCCcCCCCcccccccccCCcceEEEEeeccCCCChhhHhhHHHHHH
Q 036179 117 YAWN---IMNV-TDRYKFSNIVGQSFSDLIQNVTSRHSNSKYPAAAQTVNASSFVKLYTLVQCIPYLSKPDCNVCLPGAL 192 (339)
Q Consensus 117 ~~~n---~~~~-~~~~~f~~~l~~ll~~l~~~a~~~~s~~~fa~~~~~~~~~~~~~vYglaQC~~Dls~~~C~~CL~~a~ 192 (339)
..|+ .+++ +++..|+.++..||..|+..++.. +..+|+ +++.+ .+.++||||+||++||++++|+.||+.++
T Consensus 2 ~~Cs~~~~~~~~~~~~~f~~~l~~ll~~l~~~a~~~-~~~~f~--~~~~~-~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~ 77 (106)
T PF01657_consen 2 HFCSSNTNNNYTTDNSTFEQNLNSLLSSLVSNAASS-SSKGFA--TGSAG-SGPDTVYGLAQCRGDLSPSDCRACLADAV 77 (106)
T ss_dssp --E---SSB----TT-THHHHHHHHHHHHHHHGGGT-T-TEEE--EEE---ST---EEEEEEE-TTS-HHHHHHHHHHHH
T ss_pred CcCCCCCCCCcCCCCchHHHHHHHHHHHHHHHHhhc-cccCcE--EeecC-CCCCeEEEEEEcCCCCChhhhHHHHHHHH
Confidence 4555 3444 456669999999999999998742 246899 88764 47789999999999999999999999999
Q ss_pred hhccccCCCCccEEEECcceeeeeecCCC
Q 036179 193 AQIPACCSGKQGGRVLTPSCNIRYERYPF 221 (339)
Q Consensus 193 ~~i~~~c~~~~g~~v~~~~C~lRy~~~~F 221 (339)
.+|+.+|++++||+|++++|+||||+++|
T Consensus 78 ~~~~~~C~~~~g~~v~~~~C~lRY~~~~F 106 (106)
T PF01657_consen 78 ANISSCCPGSRGGRVWYDSCFLRYENYPF 106 (106)
T ss_dssp CCHHHHTTSBSSEEEEESSEEEEEESS--
T ss_pred HHHHHhCCCCceEEEECCCEEEEEECCCC
Confidence 99999999999999999999999999998
|
The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D. |
| >PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function | Back alignment and domain information |
|---|
| >KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ] | Back alignment and domain information |
|---|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
| >KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region | Back alignment and domain information |
|---|
| >PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function | Back alignment and domain information |
|---|
| >PTZ00382 Variant-specific surface protein (VSP); Provisional | Back alignment and domain information |
|---|
| >PF15102 TMEM154: TMEM154 protein family | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 339 | |||
| 2e79_A | 108 | Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect | 7e-21 | |
| 2e79_A | 108 | Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect | 9e-15 | |
| 3uim_A | 326 | Brassinosteroid insensitive 1-associated receptor; | 2e-04 |
| >3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 339 | |||
| 3a2e_A | 108 | Ginkbilobin-2; domain 26 unknown function (DUF26), | 99.93 | |
| 2e79_A | 108 | Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect | 99.93 | |
| 3a2e_A | 108 | Ginkbilobin-2; domain 26 unknown function (DUF26), | 99.92 | |
| 2e79_A | 108 | Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect | 99.91 | |
| 2ks1_B | 44 | Epidermal growth factor receptor; ERBB1, ERBB2, tr | 88.58 | |
| 2l2t_A | 44 | Receptor tyrosine-protein kinase ERBB-4; transmemb | 87.31 |
| >3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-26 Score=179.92 Aligned_cols=103 Identities=25% Similarity=0.435 Sum_probs=92.2
Q ss_pred eEEEEeecccCChhHHHHHHHHHHHHHHHHhhcCCcCCCCcccccccccCCcceEEEEeeccCCCChhhHhhHHHHHHhh
Q 036179 115 TVYAWNIMNVTDRYKFSNIVGQSFSDLIQNVTSRHSNSKYPAAAQTVNASSFVKLYTLVQCIPYLSKPDCNVCLPGALAQ 194 (339)
Q Consensus 115 ~~~~~n~~~~~~~~~f~~~l~~ll~~l~~~a~~~~s~~~fa~~~~~~~~~~~~~vYglaQC~~Dls~~~C~~CL~~a~~~ 194 (339)
.+..||.++++.++.|+.+|+.||..|+.+++. +..+|+ ++..+..+.++||||+||++||++++|+.||+.++.+
T Consensus 6 v~~~Cn~~~~t~~s~f~~nl~~ll~~L~~~a~~--s~~~~~--t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~ 81 (108)
T 3a2e_A 6 VSSACNTQKIPSGSPFNRNLRAMLADLRQNTAF--SGYDYK--TSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNR 81 (108)
T ss_dssp EEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGG--TTSEEE--EEECCSTTCCCEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred eeeecCCCccCCCChHHHHHHHHHHHHHhhCcc--ccCCce--EeeccCCCCceEEEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 456789889999999999999999999998864 345677 6665545668999999999999999999999999999
Q ss_pred ccccCCCCccEEEECcceeeeeecCCC
Q 036179 195 IPACCSGKQGGRVLTPSCNIRYERYPF 221 (339)
Q Consensus 195 i~~~c~~~~g~~v~~~~C~lRy~~~~F 221 (339)
|+++|++++||+||+++|+||||+++|
T Consensus 82 ~~~~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 82 IFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHHHTTSBSSEEEEETTEEEEEESSCC
T ss_pred HHHHCCCCceEEEECCCEEEEEeCCcC
Confidence 999999999999999999999999998
|
| >3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba} | Back alignment and structure |
|---|
| >2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00