Citrus Sinensis ID: 036252

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
MATRLSKAEKKIAYDARLCKLLEEYSQILIVAADNVGSNQLQHIRAGLRDHSIVLMGKNTMMKRSIRLHAERTGNRDLLNLIPLLQGNVGMIFTKGDLKEVSDEVSKHKVAAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDRVGSSESALLSKLAIKPFSYGLIVMSVYENGSVYSPEVLDLTEDDIATKFLEAVSRVASLALSIRYPTIAAAPHFFINGYKNVLSFAVATEYSFSQADKVKEYLKDPSKFAAAAAPAAAARAAPVAAAKEEKKEEPAEESDDDMGLSLFD
ccccccHHHHHHHHHHHHHHHHHHccEEEEEEEcccccHHHHHHHHHHccccEEEEcHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEcccHHHHHHHHHHcccccccccccccccEEEEccccccccccccHHHHHHcccEEEEccEEEEEccEEEEcccccccHHHHHHHHHccccccccccEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHcHHccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHcccccHHHHHccccccccccccHHHHHcccccccccccccccccccc
ccccccHHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHHcccHHHHHHHHHHcccEEEEEEcccHHHHHHHHHHcccccccccccEccccEEEccccccccccccHHHHHcccccEEcccEEEEEccEEEEEccccccHHHHHHHHHccccccEEcEEEEEEEccccEccHHHccccHHHHHHHHHHHHHHHHHHHHHcccccHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccHHHHHHcccHHHHcccccHHHHHHHHHHcHcHcccccccccccc
MATRLSKAEKKIAYDARLCKLLEEYSQILIVAadnvgsnqLQHIRAGLRDHSIVLMGKNTMMKRSIRLHaertgnrdllnlipllqgnvgmiftkgdlkEVSDEVSkhkvaaparvglvapidvvvppgntgldpsqtsffqvlniptkinkgtveiitpvelikkgdrvgssESALLSKLAIKPFSYGLIVMSVyengsvyspevldlteDDIATKFLEAVSRVASLALSiryptiaaaphfFINGYKNVLSFAVATEYSFSQADKVKEYLKDPSKFAAAAAPAAAARAAPVaaakeekkeepaeesdddmglslfd
matrlskaekkiaYDARLCKLLEEYSQILIVAADNVGSNQLQHIRAGLRDHSIVLMGKNTMMKRSIRLHAertgnrdllnLIPLLQGNVGMIFTKGDLKEVSDEVSKHKvaaparvglvapIDVVVPPGNTGLDPSQTSFFQVLNiptkinkgtveiITPVELIKKGDRVGSSESALLSKLAIKPFSYGLIVMSVYENGSVYSPEVLDLTEDDIATKFLEAVSRVASLALSIRYPTIAAAPHFFINGYKNVLSFAVATEYSFSQADKVKEYLKDPSKFAAAAAPAAAARAAPVaaakeekkeepaeesdddmglslfd
MATRLSKAEKKIAYDARLCKLLEEYSQILIVAADNVGSNQLQHIRAGLRDHSIVLMGKNTMMKRSIRLHAERTGNRDLLNLIPLLQGNVGMIFTKGDLKEVSDEVSKHKVAAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDRVGSSESALLSKLAIKPFSYGLIVMSVYENGSVYSPEVLDLTEDDIATKFLEAVSRVASLALSIRYPTIAAAPHFFINGYKNVLSFAVATEYSFSQADKVKEYLKDPSKFaaaaapaaaaraapvaaakeekkeepaeeSDDDMGLSLFD
**********KIAYDARLCKLLEEYSQILIVAADNVGSNQLQHIRAGLRDHSIVLMGKNTMMKRSIRLHAERTGNRDLLNLIPLLQGNVGMIFTKGDLKEVSDEVSKHKVAAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDRVGSSESALLSKLAIKPFSYGLIVMSVYENGSVYSPEVLDLTEDDIATKFLEAVSRVASLALSIRYPTIAAAPHFFINGYKNVLSFAVATEYSFSQADKVKEY***********************************************
******K**KKIAYDARLCKLLEEYSQILIVAADNVGSNQLQHIRAGLRDHSIVLMGKNTMMKRSIRLH**RTG*RDLLNLIPLLQGNVGMIFTKGDLKEVSDEVSKHKVAAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDRVGSSESALLSKLAIKPFSYGLIVMSVYENGSVYSPEVLDLTEDDIATKFLEAVSRVASLALSIRYPTIAAAPHFFINGYKNVLSFAVATEYSFSQADKVKEYLKDPSKFAAA******************************MGLSLFD
********EKKIAYDARLCKLLEEYSQILIVAADNVGSNQLQHIRAGLRDHSIVLMGKNTMMKRSIRLHAERTGNRDLLNLIPLLQGNVGMIFTKGDLKEVSDEVSKHKVAAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDRVGSSESALLSKLAIKPFSYGLIVMSVYENGSVYSPEVLDLTEDDIATKFLEAVSRVASLALSIRYPTIAAAPHFFINGYKNVLSFAVATEYSFSQADKVKEYLKDPSK*****************************************
*****SKAEKKIAYDARLCKLLEEYSQILIVAADNVGSNQLQHIRAGLRDHSIVLMGKNTMMKRSIRLHAERTGNRDLLNLIPLLQGNVGMIFTKGDLKEVSDEVSKHKVAAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDRVGSSESALLSKLAIKPFSYGLIVMSVYENGSVYSPEVLDLTEDDIATKFLEAVSRVASLALSIRYPTIAAAPHFFINGYKNVLSFAVATEYSFSQADKVKEYLKDPSKFAAAAA********************************L**
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MATRLSKAEKKIAYDARLCKLLEEYSQILIVAADNVGSNQLQHIRAGLRDHSIVLMGKNTMMKRSIRLHAERTGNRDLLNLIPLLQGNVGMIFTKGDLKEVSDEVSKHKVAAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDRVGSSESALLSKLAIKPFSYGLIVMSVYENGSVYSPEVLDLTEDDIATKFLEAVSRVASLALSIRYPTIAAAPHFFINGYKNVLSFAVATEYSFSQADKVKEYLKDPSKFAAAAAPAAAARAAPVAAAKEEKKEEPAEESDDDMGLSLFD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query318 2.2.26 [Sep-21-2011]
P50346320 60S acidic ribosomal prot no no 1.0 0.993 0.781 1e-132
O04204317 60S acidic ribosomal prot yes no 0.990 0.993 0.720 1e-129
Q42112320 60S acidic ribosomal prot no no 0.864 0.859 0.774 1e-128
P57691323 60S acidic ribosomal prot no no 0.864 0.851 0.763 1e-126
P41095319 60S acidic ribosomal prot yes no 1.0 0.996 0.736 1e-124
P50345322 60S acidic ribosomal prot N/A no 1.0 0.987 0.744 1e-119
O24573319 60S acidic ribosomal prot N/A no 1.0 0.996 0.710 1e-113
P29764321 60S acidic ribosomal prot N/A no 0.987 0.978 0.641 1e-105
Q9DG68315 60S acidic ribosomal prot N/A no 0.984 0.993 0.542 1e-84
Q9U3U0317 60S acidic ribosomal prot N/A no 0.984 0.987 0.523 9e-84
>sp|P50346|RLA0_SOYBN 60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1 Back     alignment and function desciption
 Score =  470 bits (1210), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 250/320 (78%), Positives = 284/320 (88%), Gaps = 2/320 (0%)

Query: 1   MATRLSKAEKKIAYDARLCKLLEEYSQILIVAADNVGSNQLQHIRAGLRDHSIVLMGKNT 60
           MA + +KAEKKIAYDA+LC L+EEY QIL+V +DNVGSNQLQ+IR GLR  S+VLMGKNT
Sbjct: 1   MAPKQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNT 60

Query: 61  MMKRSIRLHAERTGNRDLLNLIPLLQGNVGMIFTKGDLKEVSDEVSKHKVAAPARVGLVA 120
           MMKRS+R+HAE+TGN   LNLIPLL GNVG+IFTKGDLKEVS+EV+K+KV APARVGLVA
Sbjct: 61  MMKRSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 120

Query: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDRVGSSESALLSK 180
           PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGD+VGSSE+ALL+K
Sbjct: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180

Query: 181 LAIKPFSYGLIVMSVYENGSVYSPEVLDLTEDDIATKFLEAVSRVASLALSIRYPTIAAA 240
           L I+PFSYGL+V+SVY+NGSV+SPEVLDLTEDD+  KF   VS V SL+L+I YPT+AAA
Sbjct: 181 LGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLIGKFAAGVSMVTSLSLAISYPTLAAA 240

Query: 241 PHFFINGYKNVLSFAVATEYSFSQADKVKEYLKDPSKF--AAAAAPAAAARAAPVAAAKE 298
           PH F+N YKNVL+ AV T+YSF +ADKVKEYLKDPSKF  AA AAPAAA+ A   AA +E
Sbjct: 241 PHMFVNAYKNVLAVAVETDYSFPEADKVKEYLKDPSKFAVAAVAAPAAASGAPAAAAKEE 300

Query: 299 EKKEEPAEESDDDMGLSLFD 318
           EKKEEPAEESDDDMG SLFD
Sbjct: 301 EKKEEPAEESDDDMGFSLFD 320
Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
Glycine max (taxid: 3847)
>sp|O04204|RLA01_ARATH 60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana GN=RPP0A PE=1 SV=1 Back     alignment and function description
>sp|Q42112|RLA02_ARATH 60S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana GN=RPP0B PE=1 SV=2 Back     alignment and function description
>sp|P57691|RLA03_ARATH 60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana GN=RPP0C PE=1 SV=1 Back     alignment and function description
>sp|P41095|RLA0_ORYSJ 60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica GN=Os08g0130500 PE=1 SV=3 Back     alignment and function description
>sp|P50345|RLA0_LUPLU 60S acidic ribosomal protein P0 OS=Lupinus luteus PE=2 SV=1 Back     alignment and function description
>sp|O24573|RLA0_MAIZE 60S acidic ribosomal protein P0 OS=Zea mays GN=RP-P0 PE=1 SV=3 Back     alignment and function description
>sp|P29764|RLA0_CHERU 60S acidic ribosomal protein P0 OS=Chenopodium rubrum PE=2 SV=1 Back     alignment and function description
>sp|Q9DG68|RLA0_RANSY 60S acidic ribosomal protein P0 OS=Rana sylvatica GN=RPLP0 PE=2 SV=1 Back     alignment and function description
>sp|Q9U3U0|RLA0_CERCA 60S acidic ribosomal protein P0 OS=Ceratitis capitata GN=RpLP0 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query318
356539947320 PREDICTED: 60S acidic ribosomal protein 1.0 0.993 0.756 1e-138
225448367320 PREDICTED: 60S acidic ribosomal protein 1.0 0.993 0.793 1e-136
6984134317 60S acidic ribosomal protein PO [Euphorb 0.984 0.987 0.765 1e-135
255571861320 60S acidic ribosomal protein P0, putativ 1.0 0.993 0.8 1e-133
449463036320 PREDICTED: 60S acidic ribosomal protein 1.0 0.993 0.762 1e-132
224101117322 predicted protein [Populus trichocarpa] 1.0 0.987 0.773 1e-132
224109342320 predicted protein [Populus trichocarpa] 1.0 0.993 0.784 1e-132
147843260320 hypothetical protein VITISV_003812 [Viti 1.0 0.993 0.771 1e-132
313586449320 60S acidic ribosomal protein P0A [Hevea 1.0 0.993 0.787 1e-132
313586451320 60S acidic ribosomal protein P0B [Hevea 1.0 0.993 0.784 1e-131
>gi|356539947|ref|XP_003538454.1| PREDICTED: 60S acidic ribosomal protein P0-like [Glycine max] Back     alignment and taxonomy information
 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 242/320 (75%), Positives = 283/320 (88%), Gaps = 2/320 (0%)

Query: 1   MATRLSKAEKKIAYDARLCKLLEEYSQILIVAADNVGSNQLQHIRAGLRDHSIVLMGKNT 60
           MA +L+KA+KKIAYDA+LCKLL+ Y+QIL+VAADNVGSNQLQ+IR GLR  S++LMGKNT
Sbjct: 1   MARKLTKAQKKIAYDAKLCKLLDNYTQILVVAADNVGSNQLQNIRHGLRGDSVILMGKNT 60

Query: 61  MMKRSIRLHAERTGNRDLLNLIPLLQGNVGMIFTKGDLKEVSDEVSKHKVAAPARVGLVA 120
           MMKRSI++HA+ TG+  +LNLIPLL GNVG+IFTKGD+KEV + VSK+KVAAPARVGLVA
Sbjct: 61  MMKRSIKIHAQNTGDTTILNLIPLLVGNVGLIFTKGDVKEVKEVVSKYKVAAPARVGLVA 120

Query: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDRVGSSESALLSK 180
           PIDV+VPPGNTGLDPSQTSFFQVLNIPTKINKGTVEI+TPVELI KGD+VGSSE+ LLSK
Sbjct: 121 PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIVTPVELIMKGDKVGSSEAVLLSK 180

Query: 181 LAIKPFSYGLIVMSVYENGSVYSPEVLDLTEDDIATKFLEAVSRVASLALSIRYPTIAAA 240
           LAI+PFSYGL V+SVY+NGSV+SPEVLDLTEDD+  KF E V  V+SL+L+I YP+IAAA
Sbjct: 181 LAIRPFSYGLAVVSVYDNGSVFSPEVLDLTEDDLVVKFAEGVCMVSSLSLAISYPSIAAA 240

Query: 241 PHFFINGYKNVLSFAVATEYSFSQADKVKEYLKDPSKFAAAAAPAAAAR--AAPVAAAKE 298
           PH F+N YKN+L+ AVATEYSF +ADKVKEYLKDPSKFA A   A A +  AAP AA+K 
Sbjct: 241 PHMFVNSYKNILAVAVATEYSFPEADKVKEYLKDPSKFAVAVVAAPATKSGAAPAAASKV 300

Query: 299 EKKEEPAEESDDDMGLSLFD 318
           E+K+E A+ESDDDMG SLFD
Sbjct: 301 EEKKEEADESDDDMGFSLFD 320

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225448367|ref|XP_002268645.1| PREDICTED: 60S acidic ribosomal protein P0 [Vitis vinifera] Back     alignment and taxonomy information
>gi|6984134|gb|AAF34767.1|AF227622_1 60S acidic ribosomal protein PO [Euphorbia esula] Back     alignment and taxonomy information
>gi|255571861|ref|XP_002526873.1| 60S acidic ribosomal protein P0, putative [Ricinus communis] gi|223533772|gb|EEF35504.1| 60S acidic ribosomal protein P0, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449463036|ref|XP_004149240.1| PREDICTED: 60S acidic ribosomal protein P0-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224101117|ref|XP_002312149.1| predicted protein [Populus trichocarpa] gi|222851969|gb|EEE89516.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224109342|ref|XP_002315165.1| predicted protein [Populus trichocarpa] gi|222864205|gb|EEF01336.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147843260|emb|CAN80537.1| hypothetical protein VITISV_003812 [Vitis vinifera] Back     alignment and taxonomy information
>gi|313586449|gb|ADR71235.1| 60S acidic ribosomal protein P0A [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|313586451|gb|ADR71236.1| 60S acidic ribosomal protein P0B [Hevea brasiliensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query318
TAIR|locus:2083564320 AT3G09200 [Arabidopsis thalian 0.864 0.859 0.774 1.5e-113
TAIR|locus:2061231317 AT2G40010 [Arabidopsis thalian 0.993 0.996 0.687 1.9e-113
TAIR|locus:2074623323 AT3G11250 [Arabidopsis thalian 0.864 0.851 0.763 2.2e-112
FB|FBgn0000100317 RpLP0 "Ribosomal protein LP0" 0.984 0.987 0.488 6.8e-79
RGD|621247317 Rplp0 "ribosomal protein, larg 0.984 0.987 0.492 5.5e-77
UNIPROTKB|F1PUX4317 RPLP0 "Uncharacterized protein 0.984 0.987 0.485 1.9e-76
UNIPROTKB|P47826316 RPLP0 "60S acidic ribosomal pr 0.984 0.990 0.487 2.4e-76
UNIPROTKB|P05388317 RPLP0 "60S acidic ribosomal pr 0.984 0.987 0.482 2.4e-76
UNIPROTKB|Q29214318 RPLP0 "60S acidic ribosomal pr 0.984 0.984 0.484 3.1e-76
MGI|MGI:1927636317 Rplp0 "ribosomal protein, larg 0.984 0.987 0.485 3.1e-76
TAIR|locus:2083564 AT3G09200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1120 (399.3 bits), Expect = 1.5e-113, P = 1.5e-113
 Identities = 213/275 (77%), Positives = 248/275 (90%)

Query:     4 RLSKAEKKIAYDARLCKLLEEYSQILIVAADNVGSNQLQHIRAGLRDHSIVLMGKNTMMK 63
             + +KAEKKIAYD +LC+L++EY+QIL+VAADNVGS QLQ+IR GLR  S+VLMGKNTMMK
Sbjct:     3 KATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMK 62

Query:    64 RSIRLHAERTGNRDLLNLIPLLQGNVGMIFTKGDLKEVSDEVSKHKVAAPARVGLVAPID 123
             RS+R+H+E TGN  +LNL+PLLQGNVG+IFTKGDLKEVS+EV+K+KV APARVGLVAPID
Sbjct:    63 RSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPID 122

Query:   124 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDRVGSSESALLSKLAI 183
             VVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIK+GD+VGSSE+ALL+KL I
Sbjct:   123 VVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGI 182

Query:   184 KPFSYGLIVMSVYENGSVYSPEVLDLTEDDIATKFLEAVSRVASLALSIRYPTIAAAPHF 243
             +PFSYGL+V SVY+NGSV+SPEVLDLTED +  KF   +S V SLAL++ YPT+AAAPH 
Sbjct:   183 RPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHM 242

Query:   244 FINGYKNVLSFAVATEYSFSQADKVKEYLKDPSKF 278
             FIN YKN L+ AVATEY+F QA+KVKEYLKDPSKF
Sbjct:   243 FINAYKNALAIAVATEYTFPQAEKVKEYLKDPSKF 277
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0005840 "ribosome" evidence=ISS
GO:0006412 "translation" evidence=ISS
GO:0006414 "translational elongation" evidence=IEA;ISS
GO:0042254 "ribosome biogenesis" evidence=IEA
GO:0005634 "nucleus" evidence=IDA
GO:0009409 "response to cold" evidence=IEP
GO:0009507 "chloroplast" evidence=IDA
GO:0005730 "nucleolus" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0009651 "response to salt stress" evidence=IEP
GO:0005829 "cytosol" evidence=IDA
GO:0010043 "response to zinc ion" evidence=IEP
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0005507 "copper ion binding" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0001510 "RNA methylation" evidence=RCA
GO:0009664 "plant-type cell wall organization" evidence=RCA
GO:0042545 "cell wall modification" evidence=RCA
TAIR|locus:2061231 AT2G40010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2074623 AT3G11250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0000100 RpLP0 "Ribosomal protein LP0" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
RGD|621247 Rplp0 "ribosomal protein, large, P0" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1PUX4 RPLP0 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P47826 RPLP0 "60S acidic ribosomal protein P0" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P05388 RPLP0 "60S acidic ribosomal protein P0" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q29214 RPLP0 "60S acidic ribosomal protein P0" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1927636 Rplp0 "ribosomal protein, large, P0" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q42112RLA02_ARATHNo assigned EC number0.77450.86470.8593nono
P05388RLA0_HUMANNo assigned EC number0.53620.98420.9873yesno
O04204RLA01_ARATHNo assigned EC number0.72010.99050.9936yesno
Q95140RLA0_BOVINNo assigned EC number0.52720.85840.8584yesno
Q29214RLA0_PIGNo assigned EC number0.53090.85840.8584yesno
P22685RLA0_DICDINo assigned EC number0.43080.94330.9836yesno
O24573RLA0_MAIZENo assigned EC number0.71061.00.9968N/Ano
Q8SRJ7RLA0_ENCCUNo assigned EC number0.35070.82700.9068yesno
P50345RLA0_LUPLUNo assigned EC number0.74451.00.9875N/Ano
P50346RLA0_SOYBNNo assigned EC number0.78121.00.9937nono
O74864RLA0_SCHPONo assigned EC number0.44510.96540.9839yesno
P29764RLA0_CHERUNo assigned EC number0.64190.98740.9781N/Ano
P47826RLA0_CHICKNo assigned EC number0.53110.85220.8575yesno
P19889RLA0_DROME4, ., 2, ., 9, 9, ., 1, 80.53450.85840.8611yesno
Q9C3Z6RLA0_PODASNo assigned EC number0.44310.82380.8343yesno
Q90YX1RLA0_ICTPUNo assigned EC number0.560.85840.8611N/Ano
Q93572RLA0_CAEELNo assigned EC number0.49520.97480.9935yesno
P14869RLA0_MOUSENo assigned EC number0.53090.85840.8611yesno
P57691RLA03_ARATHNo assigned EC number0.76360.86470.8513nono
Q9U3U0RLA0_CERCANo assigned EC number0.52360.98420.9873N/Ano
P19945RLA0_RATNo assigned EC number0.53530.83960.8422yesno
Q9PV90RLA0_DANRENo assigned EC number0.53600.98420.9811yesno
P05317RLA0_YEASTNo assigned EC number0.44510.96540.9839yesno
P41095RLA0_ORYSJNo assigned EC number0.73661.00.9968yesno
Q9DG68RLA0_RANSYNo assigned EC number0.54280.98420.9936N/Ano
Q8NHW5RLA0L_HUMANNo assigned EC number0.52010.85220.8548yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00029254001
RecName- Full=60S acidic ribosomal protein P0; (320 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00019030001
SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (103 aa)
  ••••• 0.901
GSVIVG00018552001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (155 aa)
   •••• 0.896
GSVIVG00017864001
RecName- Full=Ribosomal protein L19; (183 aa)
  ••••• 0.849
GSVIVG00028043001
RecName- Full=Ribosomal protein L19; (208 aa)
  ••••• 0.848
GSVIVG00031140001
SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (234 aa)
•  •••• 0.827
GSVIVG00018191001
SubName- Full=Putative uncharacterized protein (Chromosome chr13 scaffold_17, whole genome shot [...] (166 aa)
• ••••• 0.826
GSVIVG00023139001
SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (136 aa)
  •• •• 0.825
GSVIVG00026857001
RecName- Full=60S ribosomal protein L36; (110 aa)
   •••• 0.820
GSVIVG00023193001
SubName- Full=Putative uncharacterized protein (Chromosome chr8 scaffold_29, whole genome shotg [...] (166 aa)
• ••••• 0.820
GSVIVG00034392001
RecName- Full=Ribosomal protein L37;; Binds to the 23S rRNA (By similarity) (97 aa)
  ••••• 0.805

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query318
PTZ00135310 PTZ00135, PTZ00135, 60S acidic ribosomal protein P 1e-138
cd05795175 cd05795, Ribosomal_P0_L10e, Ribosomal protein L10 1e-80
PTZ00240323 PTZ00240, PTZ00240, 60S ribosomal protein P0; Prov 1e-76
PRK04019330 PRK04019, rplP0, acidic ribosomal protein P0; Vali 7e-52
pfam0042888 pfam00428, Ribosomal_60s, 60s Acidic ribosomal pro 3e-22
cd00379155 cd00379, Ribosomal_L10_P0, Ribosomal protein L10 f 6e-22
pfam00466100 pfam00466, Ribosomal_L10, Ribosomal protein L10 9e-18
cd05796163 cd05796, Ribosomal_P0_like, Ribosomal protein L10 2e-16
COG0244175 COG0244, RplJ, Ribosomal protein L10 [Translation, 4e-16
cd05831103 cd05831, Ribosomal_P1, Ribosomal protein P1 2e-12
cd05833109 cd05833, Ribosomal_P2, Ribosomal protein P2 3e-12
PLN00138113 PLN00138, PLN00138, large subunit ribosomal protei 5e-09
COG2058109 COG2058, RPP1A, Ribosomal protein L12E/L44/L45/RPP 3e-07
cd04411105 cd04411, Ribosomal_P1_P2_L12p, Ribosomal protein P 1e-06
PTZ00373112 PTZ00373, PTZ00373, 60S Acidic ribosomal protein P 1e-06
PRK06402106 PRK06402, rpl12p, 50S ribosomal protein L12P; Revi 2e-04
TIGR03685105 TIGR03685, L12P_arch, 50S ribosomal protein L12P 3e-04
PRK06402106 PRK06402, rpl12p, 50S ribosomal protein L12P; Revi 4e-04
TIGR03685105 TIGR03685, L12P_arch, 50S ribosomal protein L12P 6e-04
PRK06402106 PRK06402, rpl12p, 50S ribosomal protein L12P; Revi 0.002
cd05832106 cd05832, Ribosomal_L12p, Ribosomal protein L12p 0.002
TIGR03685105 TIGR03685, L12P_arch, 50S ribosomal protein L12P 0.003
cd05797157 cd05797, Ribosomal_L10, Ribosomal protein L10 fami 0.004
>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional Back     alignment and domain information 
 Score =  393 bits (1011), Expect = e-138
 Identities = 161/315 (51%), Positives = 220/315 (69%), Gaps = 7/315 (2%)

Query: 4   RLSKAEKKIAYDARLCKLLEEYSQILIVAADNVGSNQLQHIRAGLRDHSIVLMGKNTMMK 63
           +  K  KK AY  +L +LLE+Y +ILIV+ DNVGS Q+Q IR  LR  + +LMGKNT+++
Sbjct: 3   KPEKKAKKKAYFEKLYELLEKYKKILIVSVDNVGSKQMQDIRRSLRGKAELLMGKNTLIR 62

Query: 64  RSIRLHAERTGNRDLLNLIPLLQGNVGMIFTKGDLKEVSDEVSKHKVAAPARVGLVAPID 123
           ++++   E     +L  L+P ++GNVG +FTK DL EV   + ++KV APAR G++APID
Sbjct: 63  KALKQRLEEL--PELEKLLPHVKGNVGFVFTKDDLFEVKPVILENKVPAPARAGVIAPID 120

Query: 124 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDRVGSSESALLSKLAI 183
           VV+P G TG+DPSQTSFFQ L I TKI KG +EI   V LIK+G +VG+S++ LL KL I
Sbjct: 121 VVIPAGPTGMDPSQTSFFQALGIATKIVKGQIEITNEVHLIKEGQKVGASQAVLLQKLNI 180

Query: 184 KPFSYGLIVMSVYENGSVYSPEVLDLTEDDIATKFLEAVSRVASLALSIRYPTIAAAPHF 243
           KPFSYGL V+S+Y+NGS+Y  +VLD+T++DI  KF E V  VA+++L+  YPT A+APH 
Sbjct: 181 KPFSYGLEVLSIYDNGSIYDAKVLDITDEDIVAKFQEGVQNVAAISLAAGYPTEASAPHS 240

Query: 244 FINGYKNVLSFAVATEYSFSQADKVKEYLKDPSKFAAAAAPAAAARAAPVAAAKEEKKEE 303
            +N +KN+ +  + + ++F  A+K+KE L +PS  AAAAA AAAA     AAA      E
Sbjct: 241 ILNAFKNLAAIGLESGFTFPLAEKIKEALANPSAAAAAAAAAAAA-----AAAAAAAPAE 295

Query: 304 PAEESDDDMGLSLFD 318
             EE +DDMG  LFD
Sbjct: 296 EEEEEEDDMGFGLFD 310

Length = 310
>gnl|CDD|240221 cd05795, Ribosomal_P0_L10e, Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e Back     alignment and domain information
>gnl|CDD|140267 PTZ00240, PTZ00240, 60S ribosomal protein P0; Provisional Back     alignment and domain information
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated Back     alignment and domain information
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein Back     alignment and domain information
>gnl|CDD|238222 cd00379, Ribosomal_L10_P0, Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins Back     alignment and domain information
>gnl|CDD|215933 pfam00466, Ribosomal_L10, Ribosomal protein L10 Back     alignment and domain information
>gnl|CDD|240222 cd05796, Ribosomal_P0_like, Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4) Back     alignment and domain information
>gnl|CDD|223322 COG0244, RplJ, Ribosomal protein L10 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|100109 cd05831, Ribosomal_P1, Ribosomal protein P1 Back     alignment and domain information
>gnl|CDD|100111 cd05833, Ribosomal_P2, Ribosomal protein P2 Back     alignment and domain information
>gnl|CDD|165706 PLN00138, PLN00138, large subunit ribosomal protein LP2; Provisional Back     alignment and domain information
>gnl|CDD|224969 COG2058, RPP1A, Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|100108 cd04411, Ribosomal_P1_P2_L12p, Ribosomal protein P1, P2, and L12p Back     alignment and domain information
>gnl|CDD|185582 PTZ00373, PTZ00373, 60S Acidic ribosomal protein P2; Provisional Back     alignment and domain information
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed Back     alignment and domain information
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P Back     alignment and domain information
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed Back     alignment and domain information
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P Back     alignment and domain information
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed Back     alignment and domain information
>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p Back     alignment and domain information
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P Back     alignment and domain information
>gnl|CDD|240223 cd05797, Ribosomal_L10, Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 318
PTZ00135310 60S acidic ribosomal protein P0; Provisional 100.0
PTZ00240323 60S ribosomal protein P0; Provisional 100.0
PRK04019330 rplP0 acidic ribosomal protein P0; Validated 100.0
KOG0815245 consensus 60S acidic ribosomal protein P0 [Transla 100.0
cd05795175 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 100.0
cd05796163 Ribosomal_P0_like Ribosomal protein L10 family, P0 100.0
KOG0816223 consensus Protein involved in mRNA turnover [RNA p 100.0
COG0244175 RplJ Ribosomal protein L10 [Translation, ribosomal 99.97
cd00379155 Ribosomal_L10_P0 Ribosomal protein L10 family; com 99.89
PF00466100 Ribosomal_L10: Ribosomal protein L10; InterPro: IP 99.88
PRK00099172 rplJ 50S ribosomal protein L10; Reviewed 99.84
PRK04019330 rplP0 acidic ribosomal protein P0; Validated 99.84
cd05797157 Ribosomal_L10 Ribosomal protein L10 family, L10 su 99.84
KOG1762114 consensus 60s acidic ribosomal protein P1 [Transla 99.6
cd05833109 Ribosomal_P2 Ribosomal protein P2. This subfamily 99.55
PTZ00373112 60S Acidic ribosomal protein P2; Provisional 99.51
PF0042888 Ribosomal_60s: 60s Acidic ribosomal protein; Inter 99.48
cd05831103 Ribosomal_P1 Ribosomal protein P1. This subfamily 99.46
PLN00138113 large subunit ribosomal protein LP2; Provisional 99.44
cd04411105 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and 99.42
PTZ00240323 60S ribosomal protein P0; Provisional 99.24
KOG3449112 consensus 60S acidic ribosomal protein P2 [Transla 99.13
COG2058109 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Tr 99.0
PRK06402106 rpl12p 50S ribosomal protein L12P; Reviewed 98.72
PTZ00135310 60S acidic ribosomal protein P0; Provisional 98.65
TIGR03685105 L21P_arch 50S ribosomal protein L12P. This model r 98.06
cd05832106 Ribosomal_L12p Ribosomal protein L12p. This subfam 97.97
KOG4241245 consensus Mitochondrial ribosomal protein L10 [Tra 96.97
PF0042888 Ribosomal_60s: 60s Acidic ribosomal protein; Inter 93.91
cd05795175 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 92.46
>PTZ00135 60S acidic ribosomal protein P0; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.3e-94  Score=682.30  Aligned_cols=310  Identities=52%  Similarity=0.833  Sum_probs=289.7

Q ss_pred             CCcccccHHHHHHHHHHHHHHHhccCeEEEEEecCCCchHHHHHHHHccCCcEEEEEehHHHHHHHHhhhhhhCCccccc
Q 036252            1 MATRLSKAEKKIAYDARLCKLLEEYSQILIVAADNVGSNQLQHIRAGLRDHSIVLMGKNTMMKRSIRLHAERTGNRDLLN   80 (318)
Q Consensus         1 ~~~~~~~~e~K~~~v~~l~e~l~~y~~v~iv~~~~v~s~ql~~iR~~lr~~~~~~vgKNtL~~~Al~~~~~~~~~~~~~~   80 (318)
                      |+ +..+|+||+++|++|+++|++|++++|++|+||+++|||+||+.||++++++||||||||+||+++.++  .++++.
T Consensus         1 ~~-~~~~re~K~~~v~~l~e~l~~y~~v~vv~~~nv~s~ql~~iR~~LR~~a~~~vgKNTL~r~AL~~~~~~--~~~l~~   77 (310)
T PTZ00135          1 MA-KPEKKAKKKAYFEKLYELLEKYKKILIVSVDNVGSKQMQDIRRSLRGKAELLMGKNTLIRKALKQRLEE--LPELEK   77 (310)
T ss_pred             CC-cchhHHHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhcCCEEEEEehHHHHHHHhhCccc--ccChHH
Confidence            45 778999999999999999999999999999999999999999999998999999999999999998655  345999


Q ss_pred             ccccccCceEEEEecCChhhHHHHHHhccccccccCCCccCceEEeCCCCCCCCCCchhhhhhcCCceEEecceeEeecC
Q 036252           81 LIPLLQGNVGMIFTKGDLKEVSDEVSKHKVAAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITP  160 (318)
Q Consensus        81 L~~~l~G~~gliFt~~dp~~v~k~l~~~k~~~~ar~G~iA~~dVvi~~G~t~~~p~~~~~fq~LgIptki~~G~I~i~~d  160 (318)
                      |.++|+||+||+|||+||.+++++|.+|++++|||+|.|||+||+||+|||+|+|+++++||+|||||+|++|+|+|.+|
T Consensus        78 L~~~LkG~~gliFTn~dp~ev~k~l~~~k~~~~AKaG~iAp~dv~ip~G~t~~~P~~~~~fq~LgipTkI~kG~I~I~~d  157 (310)
T PTZ00135         78 LLPHVKGNVGFVFTKDDLFEVKPVILENKVPAPARAGVIAPIDVVIPAGPTGMDPSQTSFFQALGIATKIVKGQIEITNE  157 (310)
T ss_pred             HHhhccCCEEEEEECCCHHHHHHHHHHcCCccccccCCCCCceEEEcCCCCCCCcchhhHHHHcCCceEecCCeEEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEeecCcccCcchHHHHhhcCCCccccccceeeeeeCCcccCCccccCChHHHHHHHHHHHHHHHHHhhhcCcccCCCC
Q 036252          161 VELIKKGDRVGSSESALLSKLAIKPFSYGLIVMSVYENGSVYSPEVLDLTEDDIATKFLEAVSRVASLALSIRYPTIAAA  240 (318)
Q Consensus       161 ~~v~~~G~~v~~~~A~lL~~L~i~p~~~~l~l~~~~~~g~~~~~~~l~it~e~~~~~~~~a~~~~~~lsl~ag~pt~~s~  240 (318)
                      ++||++||+||++||+||++|||+|++|+|.+.++||+|.+|++++|+||+|+|..+|++|++++++||+++||||+++|
T Consensus       158 ~~v~k~Ge~v~~~~A~LL~~L~I~p~~~~l~~~~~yd~g~~~~~~vL~i~~e~~~~~~~~~~~~i~als~aag~pt~~s~  237 (310)
T PTZ00135        158 VHLIKEGQKVGASQAVLLQKLNIKPFSYGLEVLSIYDNGSIYDAKVLDITDEDIVAKFQEGVQNVAAISLAAGYPTEASA  237 (310)
T ss_pred             eEEecCCCCcCHHHHHHHHHcCCCeEEEEEEEEEEEECCeEeCHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhhhhhhhhccccccchhcHHHHhcCcchhhhhccchhhhccCChhhhhhhhccCCccccccccCCCCCC
Q 036252          241 PHFFINGYKNVLSFAVATEYSFSQADKVKEYLKDPSKFAAAAAPAAAARAAPVAAAKEEKKEEPAEESDDDMGLSLFD  318 (318)
Q Consensus       241 p~~i~~a~~~~~al~~~~~~~~~~~~~ik~ll~~~~a~~~aa~~aa~~~~~~~~~~~~~~~~~~~ee~d~dmgfglFd  318 (318)
                      ||+|+|||+++++|+++++|+||+.++++++++||+++++ | |++++ ++++ +++++ ++||||||||||||||||
T Consensus       238 p~~ia~a~k~~~a~a~~~~~~~~~~~~~~~~~a~~~~~~~-~-~~~~~-~~~~-~~~~~-~~~~~ee~~~~~g~~lf~  310 (310)
T PTZ00135        238 PHSILNAFKNLAAIGLESGFTFPLAEKIKEALANPSAAAA-A-AAAAA-AAAA-AAAAA-PAEEEEEEEDDMGFGLFD  310 (310)
T ss_pred             HHHHHHHHHHHHHHHhhcCCCChhhHHHHHhhcCchhhcc-C-ccccC-cccc-ccccc-ccccccCcchhccccCCC
Confidence            9999999999999999999999999999999999999886 3 33222 2222 22232 356778889999999998

>PTZ00240 60S ribosomal protein P0; Provisional Back     alignment and domain information
>PRK04019 rplP0 acidic ribosomal protein P0; Validated Back     alignment and domain information
>KOG0815 consensus 60S acidic ribosomal protein P0 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e Back     alignment and domain information
>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4) Back     alignment and domain information
>KOG0816 consensus Protein involved in mRNA turnover [RNA processing and modification] Back     alignment and domain information
>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins Back     alignment and domain information
>PF00466 Ribosomal_L10: Ribosomal protein L10; InterPro: IPR001790 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK00099 rplJ 50S ribosomal protein L10; Reviewed Back     alignment and domain information
>PRK04019 rplP0 acidic ribosomal protein P0; Validated Back     alignment and domain information
>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10 Back     alignment and domain information
>KOG1762 consensus 60s acidic ribosomal protein P1 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd05833 Ribosomal_P2 Ribosomal protein P2 Back     alignment and domain information
>PTZ00373 60S Acidic ribosomal protein P2; Provisional Back     alignment and domain information
>PF00428 Ribosomal_60s: 60s Acidic ribosomal protein; InterPro: IPR001813 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>cd05831 Ribosomal_P1 Ribosomal protein P1 Back     alignment and domain information
>PLN00138 large subunit ribosomal protein LP2; Provisional Back     alignment and domain information
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p Back     alignment and domain information
>PTZ00240 60S ribosomal protein P0; Provisional Back     alignment and domain information
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed Back     alignment and domain information
>PTZ00135 60S acidic ribosomal protein P0; Provisional Back     alignment and domain information
>TIGR03685 L21P_arch 50S ribosomal protein L12P Back     alignment and domain information
>cd05832 Ribosomal_L12p Ribosomal protein L12p Back     alignment and domain information
>KOG4241 consensus Mitochondrial ribosomal protein L10 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00428 Ribosomal_60s: 60s Acidic ribosomal protein; InterPro: IPR001813 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query318
3izr_s319 Localization Of The Large Subunit Ribosomal Protein 1e-119
2zkr_g317 Structure Of A Mammalian Ribosomal 60s Subunit With 2e-78
3izs_s312 Localization Of The Large Subunit Ribosomal Protein 1e-59
3o5h_M312 Yeast 80s Ribosome. This Entry Consists Of The 60s 1e-58
3u5i_q312 The Structure Of The Eukaryotic Ribosome At 3.0 A R 5e-51
3a1y_G284 The Structure Of Protein Complex Length = 284 2e-24
3cc2_G348 The Refined Crystal Structure Of The Haloarcula Mar 6e-24
1jj2_G348 Fully Refined Crystal Structure Of The Haloarcula M 8e-24
3j21_k339 Promiscuous Behavior Of Proteins In Archaeal Riboso 2e-23
3jsy_A213 N-Terminal Fragment Of Ribosomal Protein L10 From M 1e-18
3jyw_8118 Structure Of The 60s Proteins For Eukaryotic Riboso 2e-15
>pdb|3IZR|SS Chain s, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  424 bits (1091), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/319 (67%), Positives = 258/319 (80%), Gaps = 1/319 (0%)
Query: 1   MATRLSKAEKKIAYDARLCKLLEEYSQILIVAADNVGSNQLQHIRAGLRDHSIVLMGKNT 60
           MA + +KAEKK+AYD +LC+LL+EY+++LI  ADNVGSNQLQ IR GLR  SIVLMGKNT
Sbjct: 1   MAIKRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNT 60
Query: 61  MMKRSIRLHAERTGNRDLLNLIPLLQGNVGMIFTKGDLKEVSDEVSKHKVAAPARVGLVA 120
           +++R I++HA+ TGN++ L L+PLL GNVG+IFTKGDLKEV +EV+K+KV APARVGLVA
Sbjct: 61  LIRRCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVA 120
Query: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDRVGSSESALLSK 180
           P+DVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD+VGSSESALL+K
Sbjct: 121 PVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAK 180
Query: 181 LAIKPFSYGLIVMSVYENGSVYSPEVLDLTEDDIATKFLEAVSRVASLALSIRYPTIAAA 240
           L I+PFSYGL++ +VY++GSV+SPEVLDLTEDD+  KF   VS VAS++L+I YPTIAAA
Sbjct: 181 LGIRPFSYGLVITNVYDSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAA 240
Query: 241 PHFFINGYKNVLSFAVATEYSFSQADKVKEYLKDPSKFXXXX-XXXXXXXXXXXXXXXXX 299
           PH F+NGYKNVL+ AV TEYS+  ADK+KEYLKDPSKF                      
Sbjct: 241 PHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKFAVAAPVAADSGAAAPSAAKEEE 300
Query: 300 XXXXXXXXSDDDMGLSLFD 318
                   SD D+G+SLFD
Sbjct: 301 KKEEPEEESDGDLGMSLFD 319
>pdb|2ZKR|GG Chain g, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 Back     alignment and structure
>pdb|3IZS|SS Chain s, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 312 Back     alignment and structure
>pdb|3O5H|M Chain M, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit Of The Second 80s In The Asymmetric Unit Length = 312 Back     alignment and structure
>pdb|3U5I|QQ Chain q, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome B Length = 312 Back     alignment and structure
>pdb|3A1Y|G Chain G, The Structure Of Protein Complex Length = 284 Back     alignment and structure
>pdb|3CC2|G Chain G, The Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution With Rrna Sequence For The 23s Rrna And Genome-Derived Sequences For R-Proteins Length = 348 Back     alignment and structure
>pdb|1JJ2|G Chain G, Fully Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 348 Back     alignment and structure
>pdb|3J21|KK Chain k, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 339 Back     alignment and structure
>pdb|3JSY|A Chain A, N-Terminal Fragment Of Ribosomal Protein L10 From Methanococ Jannaschii Length = 213 Back     alignment and structure
>pdb|3JYW|8 Chain 8, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 118 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query318
3iz5_s319 60S acidic ribosomal protein P0 (L10P); eukaryotic 100.0
3u5i_q312 A0, L10E, 60S acidic ribosomal protein P0; transla 100.0
2zkr_g317 60S acidic ribosomal protein P0; protein-RNA compl 100.0
3j21_k339 Acidic ribosomal protein P0 homolog; archaea, arch 100.0
1vq8_G348 Acidic ribosomal protein P0 homolog; ribosome 50S, 100.0
3a1y_G284 Acidic ribosomal protein P0; stalk, helix SPIN, ri 100.0
3jsy_A213 Acidic ribosomal protein P0 homolog; ribonucleopro 100.0
2j01_J173 50S ribosomal protein L10; ribosome, tRNA, paromom 99.86
1zav_A180 50S ribosomal protein L10; ribosome structure and 99.86
3sgf_H165 50S ribosomal protein L10; typeii release factor b 99.83
3iz5_t110 60S acidic ribosomal protein P11 - P1 (L12P); euka 99.68
3izc_t106 60S acidic ribosomal protein RPP11 (P1); eukaryoti 99.67
3izc_v106 60S acidic ribosomal protein (P2); eukaryotic ribo 99.61
3iz5_v113 60S acidic ribosomal protein P21 - P2 (L12P); euka 99.59
3j21_k339 Acidic ribosomal protein P0 homolog; archaea, arch 99.3
1vq8_G348 Acidic ribosomal protein P0 homolog; ribosome 50S, 99.03
3u5i_q312 A0, L10E, 60S acidic ribosomal protein P0; transla 98.86
3iz5_s319 60S acidic ribosomal protein P0 (L10P); eukaryotic 98.78
2zkr_g317 60S acidic ribosomal protein P0; protein-RNA compl 98.73
3a1y_G284 Acidic ribosomal protein P0; stalk, helix SPIN, ri 98.7
2lbf_A69 60S acidic ribosomal protein P1; ribosome, stalk, 96.56
3a1y_A58 50S ribosomal protein P1 (L12P); stalk, helix SPIN 92.87
2lbf_B70 60S acidic ribosomal protein P2; ribosome, stalk, 91.44
3jsy_A213 Acidic ribosomal protein P0 homolog; ribonucleopro 91.2
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8 Back     alignment and structure
>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB: 1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I* 1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I* 1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ... Back     alignment and structure
>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii} Back     alignment and structure
>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii} Back     alignment and structure
>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A Back     alignment and structure
>3sgf_H 50S ribosomal protein L10; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 3uos_H 3j12_J* 3j0w_J* 3j0y_J* 3j11_J* 3j0t_J* 3j14_J* Back     alignment and structure
>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB: 1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I* 1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I* 1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ... Back     alignment and structure
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8 Back     alignment and structure
>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii} Back     alignment and structure
>2lbf_A 60S acidic ribosomal protein P1; ribosome, stalk, P1/P2; NMR {Homo sapiens} Back     alignment and structure
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii} Back     alignment and structure
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A Back     alignment and structure
>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query318
d1zava1177 Ribosomal protein L10 {Thermotoga maritima [TaxId: 99.71
>d1zava1 d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Ribosomal protein L10-like
family: Ribosomal protein L10-like
domain: Ribosomal protein L10
species: Thermotoga maritima [TaxId: 2336]

Probab=99.71  E-value=1.9e-17  Score=142.31  Aligned_cols=98  Identities=16%  Similarity=0.226  Sum_probs=91.4

Q ss_pred             ccHHHHHHHHHHHHHHHhccCeEEEEEecCCCchHHHHHHHHccC----CcEEEEEehHHHHHHHHhhhhhhCCcccccc
Q 036252            6 SKAEKKIAYDARLCKLLEEYSQILIVAADNVGSNQLQHIRAGLRD----HSIVLMGKNTMMKRSIRLHAERTGNRDLLNL   81 (318)
Q Consensus         6 ~~~e~K~~~v~~l~e~l~~y~~v~iv~~~~v~s~ql~~iR~~lr~----~~~~~vgKNtL~~~Al~~~~~~~~~~~~~~L   81 (318)
                      .+|++|+.+|+++++.|++++.+++++|+|++++++++||++||.    +++++|+||||+|+|+++++       ++.+
T Consensus         2 m~r~~K~~~v~~l~~~l~~s~~vv~~~y~gLtv~e~~~LR~~lre~~~~g~~~kV~KNtL~k~Al~~t~-------~~~l   74 (177)
T d1zava1           2 LTRQQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNAE-------YEGY   74 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCSEEEEECCTTCCHHHHHHHHHHHHHHHTTSEEEEEECHHHHHHHHHHTT-------CCSC
T ss_pred             CCHHHHHHHHHHHHHHHHhCCEEEEEecCCCCHHHHHHHHHHHHHhccCCeEEEEechHHHHHHHhcCC-------cchh
Confidence            479999999999999999999999999999999999999999984    58999999999999999875       8899


Q ss_pred             cccccCceEEEEe-cCChhhHHHHHHhccc
Q 036252           82 IPLLQGNVGMIFT-KGDLKEVSDEVSKHKV  110 (318)
Q Consensus        82 ~~~l~G~~gliFt-~~dp~~v~k~l~~~k~  110 (318)
                      .++|.|+++++|+ .+||..+.|++.+|..
T Consensus        75 ~~~l~g~~a~~~~~~~d~~~~aK~l~~f~k  104 (177)
T d1zava1          75 EEFLKGPTAVLYVTEGDPVEAVKIIYNFYK  104 (177)
T ss_dssp             GGGCSSSEEEEEESSSCTHHHHHHHHHHHH
T ss_pred             hHHHhhccceeeeecCCchhhhhHHHHHhh
Confidence            9999999999996 5799999999988854