Citrus Sinensis ID: 036263

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-----
Protein Sequence
MNSPAIATILRQPFLPHQQNRNQNLKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI
Secondary Structure (PSIPRED)
cccHHHHHHcccccccccHHHccccccccccHHHHHHccccccccEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHcccccHHcHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccEEEcHHHHHHHHHcccHHHHHHHHHccccccEEEHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHcccccHHHHHHHHHHHcHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHcccccEEHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccEEEEcc
Coil and Loop (DISEMBL)
mnspaiatilrqpflphqqnrnqnlkkrpqisiqtnnskstiDTTVQWTSSisrhcrsgcILEAALEFTRMrlygtnpshITFVTLLsgcadfpsnnvMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQisgvepdyLTIISVLNVCANVRTLGIGLwmhryvpkqdfkdnvRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMqkgvfktdevSFTGALTacshagliedGLQYFDIMKKIyrvspqiehhgci
Flexible Loop (DISEMBL)
MNSPAIATilrqpflphqqnrnqnlkkrpqisiqtnnskstidTTVQWtssisrhcrsGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPqiehhgci
Low Complexity Region (SEG)
MNSPAIATILRQPFLPHQQNRNQNLKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI
Disordered region (IsUnstruct)
*****************************************IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQ*******
Disordered Region (DISOPRED)
******ATILRQPFLPHQQNRNQNLKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI
Disordered Region (DISEMBL)
MNSPAIATILRQPFLPHQQNRNQNLKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSP********
Disordered Region (DISPRO)
MNSPAIATILRQPFLPHQQNRNQNLKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNSPAIATILRQPFLPHQQNRNQNLKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	305	2.2.26 [Sep-21-2011]
Q9MA50	500	Pentatricopeptide repeat-	yes	no	0.914	0.558	0.504	2e-86
Q9SIL5	534	Pentatricopeptide repeat-	no	no	0.685	0.391	0.388	4e-45
O23337	722	Pentatricopeptide repeat-	no	no	0.855	0.361	0.295	1e-41
Q9ZUW3	868	Pentatricopeptide repeat-	no	no	0.865	0.304	0.335	3e-41
Q9LIQ7	633	Pentatricopeptide repeat-	no	no	0.806	0.388	0.350	3e-41
Q9SN39	871	Pentatricopeptide repeat-	no	no	0.859	0.300	0.329	9e-41
Q9LN01	741	Pentatricopeptide repeat-	no	no	0.865	0.356	0.312	2e-40
A8MQA3	595	Pentatricopeptide repeat-	no	no	0.678	0.347	0.396	4e-40
P93005	727	Pentatricopeptide repeat-	no	no	0.855	0.359	0.328	4e-40
Q9LTV8	694	Pentatricopeptide repeat-	no	no	0.855	0.376	0.298	2e-39

>sp|Q9MA50|PPR13_ARATH Pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2 SV=1

 Score =  319 bits (817), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 168/333 (50%), Positives = 208/333 (62%), Gaps = 54/333 (16%)

Query: 26  KKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVT 85
           K      IQ +N +ST +TTV WTS I+   R+G + EAA EF+ M L G  P+HITF+ 
Sbjct: 18  KNHANPKIQRHN-QSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIA 76

Query: 86  LLSGCADFPS--------------------NNVMVSTALLDMYAKFGRMDLATVVFDVM- 124
           LLSGC DF S                    N+VMV TA++ MY+K GR   A +VFD M 
Sbjct: 77  LLSGCGDFTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYME 136

Query: 125 --------------------------------RGCDFWTALLNGFVKRDYFEEALEYFRV 152
                                           R    WTA++NGFVK+ Y EEAL +FR 
Sbjct: 137 DKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFRE 196

Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
           MQISGV+PDY+ II+ LN C N+  L  GLW+HRYV  QDFK+NVRV N+L+D+Y R GC
Sbjct: 197 MQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGC 256

Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
           +EFARQVF  M KRT+VSWNS+IVGFA NG   E+L YF  MQ+  FK D V+FTGALTA
Sbjct: 257 VEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTA 316

Query: 273 CSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
           CSH GL+E+GL+YF IMK  YR+SP+IEH+GC+
Sbjct: 317 CSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCL 349

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1

 Score =  182 bits (461), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 82/211 (38%), Positives = 142/211 (67%), Gaps = 2/211 (0%)

Query: 97  NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
           +V+   +LL  YA+ G+M  A  +F +M  +    WTA+++G+     + EA+++FR MQ
Sbjct: 174 DVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQ 233

Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
           ++G+EPD +++ISVL  CA + +L +G W+H Y  ++ F     VCN L+++YS+ G I 
Sbjct: 234 LAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVIS 293

Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
            A Q+F +M  + ++SW+++I G+A +G    A+E FN MQ+   K + ++F G L+ACS
Sbjct: 294 QAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACS 353

Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
           H G+ ++GL+YFD+M++ Y++ P+IEH+GC+
Sbjct: 354 HVGMWQEGLRYFDMMRQDYQIEPKIEHYGCL 384

Arabidopsis thaliana (taxid: 3702)

>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1

 Score =  170 bits (431), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 156/311 (50%), Gaps = 50/311 (16%)

Query: 45  TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS---------------- 88
            V W + I R+CR G + EA   F  M+     P  +    ++S                
Sbjct: 177 VVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYE 236

Query: 89  ------------------------GCADFPSN--------NVMVSTALLDMYAKFGRMDL 116
                                   GC D            N+ VSTA++  Y+K GR+D 
Sbjct: 237 FLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDD 296

Query: 117 ATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN 174
           A V+FD     D   WT +++ +V+ DY +EAL  F  M  SG++PD +++ SV++ CAN
Sbjct: 297 AQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACAN 356

Query: 175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSI 234
           +  L    W+H  +     +  + + N L+++Y++ G ++  R VF++M +R +VSW+S+
Sbjct: 357 LGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSM 416

Query: 235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYR 294
           I   +++G   +AL  F  M++   + +EV+F G L  CSH+GL+E+G + F  M   Y 
Sbjct: 417 INALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYN 476

Query: 295 VSPQIEHHGCI 305
           ++P++EH+GC+
Sbjct: 477 ITPKLEHYGCM 487

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1

 Score =  169 bits (428), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 94/280 (33%), Positives = 151/280 (53%), Gaps = 16/280 (5%)

Query: 42  IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNV--- 98
           +   V WT+ IS   ++    EA   F+ M+  G  P+  T+  +L+       + V   
Sbjct: 359 VGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQ 418

Query: 99  ----------MVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
                      V TALLD Y K G+++ A  VF  +   D   W+A+L G+ +    E A
Sbjct: 419 VVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAA 478

Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVR-TLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
           ++ F  +   G++P+  T  S+LNVCA    ++G G   H +  K     ++ V + L+ 
Sbjct: 479 IKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLT 538

Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
           +Y++ G IE A +VF+R  ++ LVSWNS+I G+A +G   +AL+ F  M+K   K D V+
Sbjct: 539 MYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVT 598

Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
           F G   AC+HAGL+E+G +YFDIM +  +++P  EH+ C+
Sbjct: 599 FIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCM 638

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1

 Score =  169 bits (427), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 93/265 (35%), Positives = 148/265 (55%), Gaps = 19/265 (7%)

Query: 46  VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS-------GCADFP---- 94
           V WT+ IS + +     +A L F +M  +G +P+  T  +++        GC        
Sbjct: 127 VTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGF 186

Query: 95  ------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
                  +NV V +ALLD+Y ++G MD A +VFD +  R    W AL+ G  +R   E+A
Sbjct: 187 CVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKA 246

Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
           LE F+ M   G  P + +  S+   C++   L  G W+H Y+ K   K      NTL+D+
Sbjct: 247 LELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDM 306

Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
           Y++ G I  AR++F R+ KR +VSWNS++  +A +GF  EA+ +F  M++   + +E+SF
Sbjct: 307 YAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISF 366

Query: 267 TGALTACSHAGLIEDGLQYFDIMKK 291
              LTACSH+GL+++G  Y+++MKK
Sbjct: 367 LSVLTACSHSGLLDEGWHYYELMKK 391

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1

 Score =  167 bits (423), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 93/282 (32%), Positives = 149/282 (52%), Gaps = 20/282 (7%)

Query: 44  TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADF---------- 93
           + V +TS I+ + R G   EA   F  M   G +P   T   +L+ CA +          
Sbjct: 361 SVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVH 420

Query: 94  ---PSNN----VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
                N+    + VS AL+DMYAK G M  A +VF  MR  D   W  ++ G+ K  Y  
Sbjct: 421 EWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYAN 480

Query: 145 EALEYFRVM-QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL 203
           EAL  F ++ +     PD  T+  VL  CA++     G  +H Y+ +  +  +  V N+L
Sbjct: 481 EALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSL 540

Query: 204 MDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE 263
           +D+Y++ G +  A  +F  +  + LVSW  +I G+ ++GF  EA+  FN M++   + DE
Sbjct: 541 VDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADE 600

Query: 264 VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
           +SF   L ACSH+GL+++G ++F+IM+   ++ P +EH+ CI
Sbjct: 601 ISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACI 642

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1

 Score =  166 bits (420), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 89/285 (31%), Positives = 158/285 (55%), Gaps = 21/285 (7%)

Query: 42  IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------ 95
           +   V W + IS +  +G   EA   F  M      P   T VT++S CA   S      
Sbjct: 228 VKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQ 287

Query: 96  -----------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDY 142
                      +N+ +  AL+D+Y+K G ++ A  +F+ +   D   W  L+ G+   + 
Sbjct: 288 VHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNL 347

Query: 143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK--QDFKDNVRVC 200
           ++EAL  F+ M  SG  P+ +T++S+L  CA++  + IG W+H Y+ K  +   +   + 
Sbjct: 348 YKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLR 407

Query: 201 NTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK 260
            +L+D+Y++ G IE A QVF  +  ++L SWN++I GFA++G    + + F+ M+K   +
Sbjct: 408 TSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQ 467

Query: 261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
            D+++F G L+ACSH+G+++ G   F  M + Y+++P++EH+GC+
Sbjct: 468 PDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCM 512

Arabidopsis thaliana (taxid: 3702)

>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2

 Score =  165 bits (417), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 84/212 (39%), Positives = 128/212 (60%), Gaps = 5/212 (2%)

Query: 98  VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQI 155
           + V  +LL +YA  G +  A  VFD M   D   W +++NGF +    EEAL  +  M  
Sbjct: 156 IYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNS 215

Query: 156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215
            G++PD  TI+S+L+ CA +  L +G  +H Y+ K     N+   N L+D+Y+R G +E 
Sbjct: 216 KGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEE 275

Query: 216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ--KGVFKTDEVSFTGALTAC 273
           A+ +F  M  +  VSW S+IVG AVNGF  EA+E F  M+  +G+    E++F G L AC
Sbjct: 276 AKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPC-EITFVGILYAC 334

Query: 274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
           SH G++++G +YF  M++ Y++ P+IEH GC+
Sbjct: 335 SHCGMVKEGFEYFRRMREEYKIEPRIEHFGCM 366

Arabidopsis thaliana (taxid: 3702)

>sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1

 Score =  165 bits (417), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 92/280 (32%), Positives = 153/280 (54%), Gaps = 19/280 (6%)

Query: 45  TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP---------- 94
           ++ W++ ++ + ++G  LEA   F+RM   G  PS  T V +L+ C+D            
Sbjct: 287 SITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHS 346

Query: 95  -------SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEE 145
                    ++  +TAL+DMYAK G +  A   FD +  R    WT+L++G+V+    EE
Sbjct: 347 FLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEE 406

Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
           AL  +R M+ +G+ P+  T+ SVL  C+++ TL +G  +H +  K  F   V + + L  
Sbjct: 407 ALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALST 466

Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
           +YS+ G +E    VF+R   + +VSWN++I G + NG   EALE F  M     + D+V+
Sbjct: 467 MYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVT 526

Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
           F   ++ACSH G +E G  YF++M     + P+++H+ C+
Sbjct: 527 FVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACM 566

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1

 Score =  162 bits (411), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 158/281 (56%), Gaps = 20/281 (7%)

Query: 44  TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSG---CADFPSNNVMV 100
           T V WT+ +S + ++G  +EA   F++MR     P  +  V++L+      D      + 
Sbjct: 186 TIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIH 245

Query: 101 ST--------------ALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFE 144
           ++              +L  MYAK G++  A ++FD M+  +   W A+++G+ K  Y  
Sbjct: 246 ASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAR 305

Query: 145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM 204
           EA++ F  M    V PD ++I S ++ CA V +L     M+ YV + D++D+V + + L+
Sbjct: 306 EAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALI 365

Query: 205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV 264
           D++++ G +E AR VF R   R +V W+++IVG+ ++G   EA+  +  M++G    ++V
Sbjct: 366 DMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDV 425

Query: 265 SFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
           +F G L AC+H+G++ +G  +F+ M   ++++PQ +H+ C+
Sbjct: 426 TFLGLLMACNHSGMVREGWWFFNRMAD-HKINPQQQHYACV 465

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
359479098	518	PREDICTED: pentatricopeptide repeat-cont	0.950	0.559	0.491	8e-93
449492842	525	PREDICTED: LOW QUALITY PROTEIN: pentatri	0.957	0.556	0.483	6e-87
449443656	525	PREDICTED: pentatricopeptide repeat-cont	0.957	0.556	0.483	9e-87
356547111	521	PREDICTED: pentatricopeptide repeat-cont	0.862	0.504	0.514	2e-85
297843364	500	PDE247 [Arabidopsis lyrata subsp. lyrata	0.914	0.558	0.495	5e-85
145335149	500	protein pigment defective 247 [Arabidops	0.914	0.558	0.504	1e-84
255565773	384	pentatricopeptide repeat-containing prot	0.875	0.695	0.514	1e-84
347954512	476	chloroplast biogenesis 19, partial [Raph	0.950	0.609	0.492	9e-84
347954510	475	chloroplast biogenesis 19, partial [Olim	0.881	0.566	0.490	3e-83
347954496	489	chloroplast biogenesis 19, partial [Caps	0.914	0.570	0.486	3e-83

>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic-like [Vitis vinifera]

 Score =  346 bits (887), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 170/346 (49%), Positives = 231/346 (66%), Gaps = 56/346 (16%)

Query: 16  PHQQNRNQNLKKRPQIS---IQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMR 72
           P+ +        RP  +   +  +++ S ID  V WTSSI+ HCR+G + EAA EF+RM+
Sbjct: 22  PNSKPNQPTFPSRPHSTKYHLTRSHTHSPIDPIVSWTSSIALHCRNGQLPEAAAEFSRMQ 81

Query: 73  LYGTNPSHITFVTLLSGCADFP--------------------SNNVMVSTALLDMYAKFG 112
           + G  P+HITF+TLLS C DFP                    + NVMV TAL+DMY+K G
Sbjct: 82  IAGVRPNHITFLTLLSACTDFPLEGLRFGGSIHAYVRKLGLDTENVMVGTALVDMYSKCG 141

Query: 113 RMDLATVVFDVM---------------------------------RGCDFWTALLNGFVK 139
           ++DLA ++FD M                                 R    WT+++ GFVK
Sbjct: 142 QLDLAWLMFDEMHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVK 201

Query: 140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
           +  FE+ALE+FR MQ++GVEPDY+TIISVL  CAN+  LG+GLW++R+V KQDFKDN+++
Sbjct: 202 KGCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGALGLGLWINRFVMKQDFKDNIKI 261

Query: 200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF 259
            N+L+D+YSR GCI  ARQVF++M KR+LVSWNS+IVGFA+NG   EALE+FNLM+K  F
Sbjct: 262 SNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFALNGHAEEALEFFNLMRKEGF 321

Query: 260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
           + D VSFTGALTACSH+GL+++GLQ+FDIMK+  ++SP+IEH+GC+
Sbjct: 322 RPDGVSFTGALTACSHSGLVDEGLQFFDIMKRTRKISPRIEHYGCL 367

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449492842|ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g05750, chloroplastic-like [Cucumis sativus]

 Score =  327 bits (837), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 173/358 (48%), Positives = 224/358 (62%), Gaps = 66/358 (18%)

Query: 1   MNSPAIATILRQPFLPHQQNRNQNLKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGC 60
           +++P      R P  PH   RN + K  P          +++D  V WTSS++R+CR+G 
Sbjct: 26  LSNPTKLNFPRSPNSPH---RNISSKFNP----------NSVDPIVLWTSSLARYCRNGQ 72

Query: 61  ILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------------------NNVMV 100
           + EAA EFTRMRL G  P+HITF+TLLS CADFPS                     +VMV
Sbjct: 73  LSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLHGYACKYGLDTGHVMV 132

Query: 101 STALLDMYAKF-------------------------------GRMDLATVVFDVM--RGC 127
            TAL+DMY+K                                G ++LA  +FD M  R  
Sbjct: 133 GTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDA 192

Query: 128 DFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRY 187
             WTAL+NG +K  Y E+ALE F  MQ SGV  DY++II+VL  CA++  L +GLW+HR+
Sbjct: 193 ISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLGLWVHRF 252

Query: 188 VPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEA 247
           V  Q+FKDN+++ N+L+D+YSR GCIEFARQVF +M KRTLVSWNSIIVGFAVNGF  E+
Sbjct: 253 VMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADES 312

Query: 248 LEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
           LE+F  MQK  FK D VS+TGALTACSHAGL+  GL+ FD MK +++++P+IEH+GCI
Sbjct: 313 LEFFXAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCI 370

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443656|ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic-like [Cucumis sativus]

 Score =  326 bits (835), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 173/358 (48%), Positives = 224/358 (62%), Gaps = 66/358 (18%)

Query: 1   MNSPAIATILRQPFLPHQQNRNQNLKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGC 60
           +++P      R P  PH   RN + K  P          +++D  V WTSS++R+CR+G 
Sbjct: 26  LSNPTKLNFPRSPNSPH---RNISSKFNP----------NSVDPIVLWTSSLARYCRNGQ 72

Query: 61  ILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------------------NNVMV 100
           + EAA EFTRMRL G  P+HITF+TLLS CADFPS                     +VMV
Sbjct: 73  LSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLHGYACKYGLDTGHVMV 132

Query: 101 STALLDMYAKF-------------------------------GRMDLATVVFDVM--RGC 127
            TAL+DMY+K                                G ++LA  +FD M  R  
Sbjct: 133 GTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDA 192

Query: 128 DFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRY 187
             WTAL+NG +K  Y E+ALE F  MQ SGV  DY++II+VL  CA++  L +GLW+HR+
Sbjct: 193 ISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLGLWVHRF 252

Query: 188 VPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEA 247
           V  Q+FKDN+++ N+L+D+YSR GCIEFARQVF +M KRTLVSWNSIIVGFAVNGF  E+
Sbjct: 253 VMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADES 312

Query: 248 LEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
           LE+F  MQK  FK D VS+TGALTACSHAGL+  GL+ FD MK +++++P+IEH+GCI
Sbjct: 313 LEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCI 370

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic-like [Glycine max]

 Score =  322 bits (824), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 163/317 (51%), Positives = 209/317 (65%), Gaps = 54/317 (17%)

Query: 43  DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------- 95
           D  V WT+SI+ +C+SG +++AA +F +MR     P+HITF+TLLS CA +PS       
Sbjct: 54  DPIVSWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAHYPSRSSISFG 113

Query: 96  --------------NNVMVSTALLDMYAKFGRMDLATVVFD----------------VMR 125
                         N+VMV TAL+DMYAK GR++ A + FD                 MR
Sbjct: 114 TAIHAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMR 173

Query: 126 GCDF-----------------WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV 168
              F                 WTAL+ GFVK+DY EEALE FR MQ+SGV PDY+T+I+V
Sbjct: 174 NGKFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAV 233

Query: 169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL 228
           +  CAN+ TLG+GLW+HR V  QDF++NV+V N+L+D+YSR GCI+ ARQVF RM +RTL
Sbjct: 234 IAACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRTL 293

Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI 288
           VSWNSIIVGFAVNG   EAL YFN MQ+  FK D VS+TGAL ACSHAGLI +GL+ F+ 
Sbjct: 294 VSWNSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYTGALMACSHAGLIGEGLRIFEH 353

Query: 289 MKKIYRVSPQIEHHGCI 305
           MK++ R+ P+IEH+GC+
Sbjct: 354 MKRVRRILPRIEHYGCL 370

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843364|ref|XP_002889563.1| PDE247 [Arabidopsis lyrata subsp. lyrata] gi|297335405|gb|EFH65822.1| PDE247 [Arabidopsis lyrata subsp. lyrata]

 Score =  320 bits (820), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 165/333 (49%), Positives = 208/333 (62%), Gaps = 54/333 (16%)

Query: 26  KKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVT 85
           K+     IQ  N +ST + TV WTS I+   R+G + EAA EF+ MRL G  P+HITF+ 
Sbjct: 18  KRHANPKIQRLN-QSTSENTVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIA 76

Query: 86  LLSGCADFPS--------------------NNVMVSTALLDMYAKFGRMDLATVVFDVM- 124
           +LSGC DFPS                    N+VMV TA++ MY+K GR+  A  VFD M 
Sbjct: 77  ILSGCGDFPSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRVKKARCVFDYME 136

Query: 125 --------------------------------RGCDFWTALLNGFVKRDYFEEALEYFRV 152
                                           R    WTA++NGFV + + EEAL +FR 
Sbjct: 137 DKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVNKGFHEEALAWFRE 196

Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
           MQISGV+PDY+ II+ LN C N+  L  GLW+HRYV  QDFK+NVRV N+L+D+Y R GC
Sbjct: 197 MQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGC 256

Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
           +EFARQVF +M KRT+VSWNS+IVGFA NG   E+L YF  MQ+  FK D V+FTGALTA
Sbjct: 257 VEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEERFKPDAVTFTGALTA 316

Query: 273 CSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
           CSH GL+E+GL+YF IM   YR+SP+IEH+GC+
Sbjct: 317 CSHVGLVEEGLRYFQIMISDYRISPRIEHYGCL 349

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145335149|ref|NP_172066.3| protein pigment defective 247 [Arabidopsis thaliana] gi|75191933|sp|Q9MA50.1|PPR13_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g05750, chloroplastic; AltName: Full=Protein PIGMENT DEFECTIVE 247; Flags: Precursor gi|6850304|gb|AAF29381.1|AC009999_1 Contains similarity to a hypothetical protein from Arabidopsis thaliana gb|AC007109.6, and contains two DUF17 PF|01535 domains [Arabidopsis thaliana] gi|62320576|dbj|BAD95203.1| hypothetical protein [Arabidopsis thaliana] gi|332189766|gb|AEE27887.1| protein pigment defective 247 [Arabidopsis thaliana]

 Score =  319 bits (817), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 168/333 (50%), Positives = 208/333 (62%), Gaps = 54/333 (16%)

Query: 26  KKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVT 85
           K      IQ +N +ST +TTV WTS I+   R+G + EAA EF+ M L G  P+HITF+ 
Sbjct: 18  KNHANPKIQRHN-QSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIA 76

Query: 86  LLSGCADFPS--------------------NNVMVSTALLDMYAKFGRMDLATVVFDVM- 124
           LLSGC DF S                    N+VMV TA++ MY+K GR   A +VFD M 
Sbjct: 77  LLSGCGDFTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYME 136

Query: 125 --------------------------------RGCDFWTALLNGFVKRDYFEEALEYFRV 152
                                           R    WTA++NGFVK+ Y EEAL +FR 
Sbjct: 137 DKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFRE 196

Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
           MQISGV+PDY+ II+ LN C N+  L  GLW+HRYV  QDFK+NVRV N+L+D+Y R GC
Sbjct: 197 MQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGC 256

Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
           +EFARQVF  M KRT+VSWNS+IVGFA NG   E+L YF  MQ+  FK D V+FTGALTA
Sbjct: 257 VEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTA 316

Query: 273 CSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
           CSH GL+E+GL+YF IMK  YR+SP+IEH+GC+
Sbjct: 317 CSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCL 349

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565773|ref|XP_002523876.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223536964|gb|EEF38602.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  319 bits (817), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 165/321 (51%), Positives = 216/321 (67%), Gaps = 54/321 (16%)

Query: 24  NLKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITF 83
           +L + P+ +++   ++S ID T+ WTSSISRHC +G + EAA  FT+MRL    P+HITF
Sbjct: 39  HLIQHPRTNLKHQCNRS-IDLTIAWTSSISRHCCNGQLPEAASLFTQMRLAAVEPNHITF 97

Query: 84  VTLLSGCADFP--------------------SNNVMVSTALLDMYAKFGRMDLATVVFD- 122
            TL+S CADFP                    + NVMV TAL+DMYAK G++ LA ++FD 
Sbjct: 98  ATLISFCADFPFQGKSIGPSIHAYVRKLGLDTCNVMVGTALVDMYAKCGKVQLARLIFDD 157

Query: 123 ---------------VMRGCDF-----------------WTALLNGFVKRDYFEEALEYF 150
                           MR  +                  WT  ++GF+K+ +FE+ALE+F
Sbjct: 158 LKVKNSVSWNTMIDGYMRNGETGSAMELFDEMPEKDAISWTVFIDGFIKKGHFEQALEWF 217

Query: 151 RVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF 210
           R MQ+S VEPDY+TII+VL+ CAN+  LG+GLW+HRYV +++F++NVR+ N+L+D+YSR 
Sbjct: 218 REMQVSKVEPDYVTIIAVLSACANLGALGLGLWIHRYVLEKEFRNNVRIGNSLIDMYSRC 277

Query: 211 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL 270
           GCIE ARQVF +M KRTLVSWNSIIVGFA NGF  EALEYF LMQK  FK D VSFTGAL
Sbjct: 278 GCIELARQVFHKMLKRTLVSWNSIIVGFAANGFAEEALEYFGLMQKEGFKPDGVSFTGAL 337

Query: 271 TACSHAGLIEDGLQYFDIMKK 291
           TACSHAG++++GL+ FDIMK+
Sbjct: 338 TACSHAGMVDEGLKCFDIMKR 358

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|347954512|gb|AEP33756.1| chloroplast biogenesis 19, partial [Raphanus sativus]

 Score =  316 bits (809), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 163/331 (49%), Positives = 207/331 (62%), Gaps = 41/331 (12%)

Query: 7   ATILRQPFLPHQQNRNQNLKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAAL 66
           AT+   PF+    + N       Q         ST +TTV WTS I+   R+G + EAA 
Sbjct: 5   ATVTAHPFISRNNHANPKTHHLNQ---------STPETTVSWTSRITLLSRNGRLAEAAK 55

Query: 67  EFTRMRLYGTNPSHITFVTLLSGCAD----------------FPSNNVMVSTALLDMYAK 110
           E T MRL G  P+HIT + LLSGC+D                F  N+VMV TA+L MY+K
Sbjct: 56  ELTAMRLAGVEPNHITLIALLSGCSDCEPLGDSLHGYACKLGFDRNHVMVGTAILGMYSK 115

Query: 111 FGRMDLATVVFDVM----------------RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
             R   A +VFD M                R     T ++NGFVK+   EEAL +FR MQ
Sbjct: 116 RRRFRKARLVFDRMGDXNSVTWNTMIDGYXRDLISXTXMINGFVKKGLNEEALAWFREMQ 175

Query: 155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
           +SGVEPDY+ II+ L  C N+  L  GLW+HRYV  QDFK+NVRV N+L+D+Y R GC+E
Sbjct: 176 VSGVEPDYVAIIAALAACTNLGALSFGLWVHRYVVSQDFKNNVRVSNSLIDLYCRCGCVE 235

Query: 215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
           FARQVF +M KRT+VSWNS+IVGFA NG   E+L YF  MQ+  FK D V+FTGALTACS
Sbjct: 236 FARQVFDKMEKRTVVSWNSVIVGFAANGHAHESLVYFRKMQEERFKPDAVTFTGALTACS 295

Query: 275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
           H GL+E+G++YF+ MK+ YR+SP+IEH+GC+
Sbjct: 296 HVGLVEEGVRYFEAMKRDYRISPRIEHYGCL 326

Source: Raphanus sativus

Species: Raphanus sativus

Genus: Raphanus

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|347954510|gb|AEP33755.1| chloroplast biogenesis 19, partial [Olimarabidopsis pumila]

 Score =  314 bits (805), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 158/322 (49%), Positives = 206/322 (63%), Gaps = 53/322 (16%)

Query: 37  NSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS- 95
           +++ST +T V WTS I+   RS  + EAA EF  MRL G  P+HITF+ LLSGC DFPS 
Sbjct: 3   HNQSTSETIVSWTSRITLLTRSAXLAEAAKEFADMRLAGVEPTHITFIALLSGCGDFPSG 62

Query: 96  -------------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF------- 129
                              N+VMV TA+L MY+K GR+  A +VFD M   +        
Sbjct: 63  SETLGDLLHGYACKLGLDRNHVMVGTAILGMYSKRGRVKKARLVFDYMDDKNSVTWNTMI 122

Query: 130 --------------------------WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL 163
                                     WTA++NGFVK+ + EEAL +FR MQISGV+PDY+
Sbjct: 123 DGYMRSGQVHNAVKLFDKMPEPDLISWTAMVNGFVKKGFHEEALVWFREMQISGVKPDYV 182

Query: 164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM 223
            II+ LN C N+  L +GLW+HRYV  QDFK+NVRV N+L+D+Y R GC+EFAR+VF +M
Sbjct: 183 AIIAALNACTNLGALSLGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKM 242

Query: 224 HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGL 283
            KRT+VSWNS+IVGFA NG   E+L YF  MQ+  FK + V+FTGALTACSH GL+++GL
Sbjct: 243 EKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPNAVTFTGALTACSHVGLVDEGL 302

Query: 284 QYFDIMKKIYRVSPQIEHHGCI 305
           ++F  MK+ Y +SP+IEH+GC+
Sbjct: 303 RFFQSMKRDYNISPRIEHYGCL 324

Source: Olimarabidopsis pumila

Species: Olimarabidopsis pumila

Genus: Olimarabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|347954496|gb|AEP33748.1| chloroplast biogenesis 19, partial [Capsella bursa-pastoris]

 Score =  314 bits (804), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 162/333 (48%), Positives = 207/333 (62%), Gaps = 54/333 (16%)

Query: 26  KKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVT 85
           K      IQ  N +ST +T V WTS I+   R+G + EAA EF+ MRL G  P+HITF+ 
Sbjct: 7   KHHADPKIQKLN-QSTSETIVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIA 65

Query: 86  LLSGCADFPSN--------------------NVMVSTALLDMYAKFGRMDLATVVFDVM- 124
           LLSGC DF S                     +VMV TA+L MY+K  R+  A +VFD M 
Sbjct: 66  LLSGCGDFSSGSEALGDLLHGYACKLGHDRTHVMVGTAILGMYSKHSRVKKARLVFDYME 125

Query: 125 --------------------------------RGCDFWTALLNGFVKRDYFEEALEYFRV 152
                                           R    WTA++NGFVK+ + EEAL +FR 
Sbjct: 126 DKNSVTWNTMIDGYMRNGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALAWFRE 185

Query: 153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
           MQISGV+PDY+ II+ LN C N+  L  GLW+HRYV  QDFK+NV+V N+L+D+Y R GC
Sbjct: 186 MQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVKVSNSLIDLYCRCGC 245

Query: 213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
           +EFAR+VF +M KRT+VSWNS+IVGFA NG   E+L YF  MQ+  FK D V+FTGALTA
Sbjct: 246 VEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTA 305

Query: 273 CSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
           CSH GL+E+GL+YF  MK+ +R+SP+IEH+GC+
Sbjct: 306 CSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCL 338

Source: Capsella bursa-pastoris

Species: Capsella bursa-pastoris

Genus: Capsella

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
TAIR|locus:2198678	500	PDE247 "pigment defective 247"	0.685	0.418	0.599	2e-65
TAIR|locus:2054789	534	MEF21 "mitochondrial editing f	0.685	0.391	0.388	1.9e-42
TAIR|locus:4515103421	654	AT4G19191 "AT4G19191" [Arabido	0.750	0.350	0.337	9.3e-41
TAIR|locus:2124137	871	DOT4 "DEFECTIVELY ORGANIZED TR	0.685	0.239	0.358	2.5e-39
TAIR|locus:2206164	570	AT1G31430 [Arabidopsis thalian	0.681	0.364	0.372	4.2e-39
TAIR|locus:2093920	687	AT3G15930 "AT3G15930" [Arabido	0.691	0.307	0.356	6.7e-39
TAIR|locus:4010713895	595	AT4G21065 "AT4G21065" [Arabido	0.678	0.347	0.396	1.7e-38
TAIR|locus:2057574	583	AT2G33760 [Arabidopsis thalian	0.675	0.353	0.354	6.4e-38
TAIR|locus:2159602	511	AT5G08510 "AT5G08510" [Arabido	0.701	0.418	0.353	7.3e-38
TAIR|locus:2057630	727	AT2G33680 "AT2G33680" [Arabido	0.685	0.287	0.360	7.9e-38

TAIR|locus:2198678 PDE247 "pigment defective 247" [Arabidopsis thaliana (taxid:3702)]

 Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
 Identities = 127/212 (59%), Positives = 161/212 (75%)

Query:    96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM 153
             N+V  +T ++D Y + G++D A  +FD M   D   WTA++NGFVK+ Y EEAL +FR M
Sbjct:   139 NSVTWNT-MIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREM 197

Query:   154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
             QISGV+PDY+ II+ LN C N+  L  GLW+HRYV  QDFK+NVRV N+L+D+Y R GC+
Sbjct:   198 QISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCV 257

Query:   214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
             EFARQVF  M KRT+VSWNS+IVGFA NG   E+L YF  MQ+  FK D V+FTGALTAC
Sbjct:   258 EFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTAC 317

Query:   274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
             SH GL+E+GL+YF IMK  YR+SP+IEH+GC+
Sbjct:   318 SHVGLVEEGLRYFQIMKCDYRISPRIEHYGCL 349

GO:0005739 "mitochondrion" evidence=ISM

GO:0009451 "RNA modification" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2054789 MEF21 "mitochondrial editing factor 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 82/211 (38%), Positives = 142/211 (67%)

Query:    97 NVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
             +V+   +LL  YA+ G+M  A  +F +M  +    WTA+++G+     + EA+++FR MQ
Sbjct:   174 DVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQ 233

Query:   155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
             ++G+EPD +++ISVL  CA + +L +G W+H Y  ++ F     VCN L+++YS+ G I 
Sbjct:   234 LAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVIS 293

Query:   215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
              A Q+F +M  + ++SW+++I G+A +G    A+E FN MQ+   K + ++F G L+ACS
Sbjct:   294 QAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACS 353

Query:   275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
             H G+ ++GL+YFD+M++ Y++ P+IEH+GC+
Sbjct:   354 HVGMWQEGLRYFDMMRQDYQIEPKIEHYGCL 384

GO:0005739 "mitochondrion" evidence=ISM

GO:0080156 "mitochondrial mRNA modification" evidence=IMP

TAIR|locus:4515103421 AT4G19191 "AT4G19191" [Arabidopsis thaliana (taxid:3702)]

 Score = 394 (143.8 bits), Expect = 9.3e-41, Sum P(2) = 9.3e-41
 Identities = 79/234 (33%), Positives = 134/234 (57%)

Query:    77 NPSHITFVTLLSGCADF--PSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTA 132
             NP  +T   L+   A       ++      + MY+K      A ++FD+M  R C  WT 
Sbjct:   268 NPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTV 327

Query:   133 LLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD 192
             +++G+ ++   +EAL  F  M  SG +PD +T++S+++ C    +L  G W+        
Sbjct:   328 MISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYG 387

Query:   193 FK-DNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF 251
              K DNV +CN L+D+YS+ G I  AR +F    ++T+V+W ++I G+A+NG   EAL+ F
Sbjct:   388 CKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLF 447

Query:   252 NLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
             + M    +K + ++F   L AC+H+G +E G +YF IMK++Y +SP ++H+ C+
Sbjct:   448 SKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCM 501

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
 Identities = 76/212 (35%), Positives = 124/212 (58%)

Query:    97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVM- 153
             ++ VS AL+DMYAK G M  A +VF  MR  D   W  ++ G+ K  Y  EAL  F ++ 
Sbjct:   431 DIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLL 490

Query:   154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI 213
             +     PD  T+  VL  CA++     G  +H Y+ +  +  +  V N+L+D+Y++ G +
Sbjct:   491 EEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGAL 550

Query:   214 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
               A  +F  +  + LVSW  +I G+ ++GF  EA+  FN M++   + DE+SF   L AC
Sbjct:   551 LLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYAC 610

Query:   274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
             SH+GL+++G ++F+IM+   ++ P +EH+ CI
Sbjct:   611 SHSGLVDEGWRFFNIMRHECKIEPTVEHYACI 642

GO:0009507 "chloroplast" evidence=ISM

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010588 "cotyledon vascular tissue pattern formation" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

TAIR|locus:2206164 AT1G31430 [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 4.2e-39, Sum P(2) = 4.2e-39
 Identities = 79/212 (37%), Positives = 125/212 (58%)

Query:    97 NVMVSTALLDMYAKFGRMDLATVVFD--VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQ 154
             NV   T+++  Y   GR+D A V+F+   ++    WTA++NG+V+ + F+EALE FR MQ
Sbjct:   212 NVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQ 271

Query:   155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
              +G+ PD   ++S+L  CA    L  G W+H Y+ +     +  V   L+D+Y++ GCIE
Sbjct:   272 TAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGCIE 331

Query:   215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE-YFNLMQKGVFKTDEVSFTGALTAC 273
              A +VF  + +R   SW S+I G A+NG  G AL+ Y+ +   GV + D ++F   LTAC
Sbjct:   332 TALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYYEMENVGV-RLDAITFVAVLTAC 390

Query:   274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
             +H G + +G + F  M + + V P+ EH  C+
Sbjct:   391 NHGGFVAEGRKIFHSMTERHNVQPKSEHCSCL 422

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2093920 AT3G15930 "AT3G15930" [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 6.7e-39, Sum P(2) = 6.7e-39
 Identities = 76/213 (35%), Positives = 133/213 (62%)

Query:    95 SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRV 152
             + +V+  T+++  Y + G + LA   FD M   D   WT +++G+++   F E+LE FR 
Sbjct:   299 ARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFRE 358

Query:   153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
             MQ +G+ PD  T++SVL  CA++ +L IG W+  Y+ K   K++V V N L+D+Y + GC
Sbjct:   359 MQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGC 418

Query:   213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA 272
              E A++VF  M +R   +W +++VG A NG   EA++ F  MQ    + D++++ G L+A
Sbjct:   419 SEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSA 478

Query:   273 CSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
             C+H+G+++   ++F  M+  +R+ P + H+GC+
Sbjct:   479 CNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCM 511

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4010713895 AT4G21065 "AT4G21065" [Arabidopsis thaliana (taxid:3702)]

 Score = 412 (150.1 bits), Expect = 1.7e-38, P = 1.7e-38
 Identities = 84/212 (39%), Positives = 128/212 (60%)

Query:    98 VMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEALEYFRVMQI 155
             + V  +LL +YA  G +  A  VFD M   D   W +++NGF +    EEAL  +  M  
Sbjct:   156 IYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNS 215

Query:   156 SGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF 215
              G++PD  TI+S+L+ CA +  L +G  +H Y+ K     N+   N L+D+Y+R G +E 
Sbjct:   216 KGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEE 275

Query:   216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ--KGVFKTDEVSFTGALTAC 273
             A+ +F  M  +  VSW S+IVG AVNGF  EA+E F  M+  +G+    E++F G L AC
Sbjct:   276 AKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPC-EITFVGILYAC 334

Query:   274 SHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
             SH G++++G +YF  M++ Y++ P+IEH GC+
Sbjct:   335 SHCGMVKEGFEYFRRMREEYKIEPRIEHFGCM 366

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2057574 AT2G33760 [Arabidopsis thaliana (taxid:3702)]

 Score = 376 (137.4 bits), Expect = 6.4e-38, Sum P(2) = 6.4e-38
 Identities = 74/209 (35%), Positives = 124/209 (59%)

Query:   100 VSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISG 157
             V  AL+  Y+K G M+ A  VFD M  +    W +L++GF +    +EA++ F  M+ SG
Sbjct:   144 VQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESG 203

Query:   158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR 217
              EPD  T +S+L+ CA    + +G W+H+Y+  +    NV++   L+++YSR G +  AR
Sbjct:   204 FEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAR 263

Query:   218 QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT-DEVSFTGALTACSHA 276
             +VF +M +  + +W ++I  +  +G+  +A+E FN M+       + V+F   L+AC+HA
Sbjct:   264 EVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHA 323

Query:   277 GLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
             GL+E+G   +  M K YR+ P +EHH C+
Sbjct:   324 GLVEEGRSVYKRMTKSYRLIPGVEHHVCM 352

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2159602 AT5G08510 "AT5G08510" [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
 Identities = 77/218 (35%), Positives = 130/218 (59%)

Query:    92 DFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEY 149
             +    +V V  A++  Y + G M  A  +FD M  +    WT +++GF +   + EAL+ 
Sbjct:   142 EMSKRDVPVWNAMITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKM 201

Query:   150 FRVMQIS-GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
             F  M+    V+P+++T++SVL  CAN+  L IG  +  Y  +  F DN+ VCN  +++YS
Sbjct:   202 FLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYS 261

Query:   209 RFGCIEFARQVFQRM-HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT 267
             + G I+ A+++F+ + ++R L SWNS+I   A +G   EAL  F  M +   K D V+F 
Sbjct:   262 KCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFV 321

Query:   268 GALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
             G L AC H G++  G + F  M++++++SP++EH+GC+
Sbjct:   322 GLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGCM 359

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2057630 AT2G33680 "AT2G33680" [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 7.9e-38, Sum P(2) = 7.9e-38
 Identities = 76/211 (36%), Positives = 125/211 (59%)

Query:    97 NVMVSTALLDMYAKFGRMDLATVVFDVMRGCD--FWTALLNGFVKRDYFEEALEYFRVMQ 154
             ++  +TAL+DMYAK G +  A   FD ++  D   WT+L++G+V+    EEAL  +R M+
Sbjct:   356 HLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMK 415

Query:   155 ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIE 214
              +G+ P+  T+ SVL  C+++ TL +G  +H +  K  F   V + + L  +YS+ G +E
Sbjct:   416 TAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLE 475

Query:   215 FARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS 274
                 VF+R   + +VSWN++I G + NG   EALE F  M     + D+V+F   ++ACS
Sbjct:   476 DGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACS 535

Query:   275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
             H G +E G  YF++M     + P+++H+ C+
Sbjct:   536 HKGFVERGWFYFNMMSDQIGLDPKVDHYACM 566

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00017500001 SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (518 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	305
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	3e-41
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	4e-38
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-37
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-35
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-28
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	3e-24
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	5e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	2e-04
pfam01535	31	pfam01535, PPR, PPR repeat	2e-04
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-04
pfam01535	31	pfam01535, PPR, PPR repeat	0.001
pfam13041	50	pfam13041, PPR_2, PPR repeat family	0.002
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.003

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  151 bits (384), Expect = 3e-41
 Identities = 86/280 (30%), Positives = 150/280 (53%), Gaps = 23/280 (8%)

Query: 46  VQWTSSISRHCRSGCILEAALE-FTRMRLYGTNPSHITFVTLLSGCADFPS--------- 95
           V WT+ IS + ++G + + ALE +  M     +P  IT  ++LS CA             
Sbjct: 355 VSWTAMISGYEKNG-LPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413

Query: 96  --------NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEE 145
                   + V+V+ AL++MY+K   +D A  VF  +   D   WT+++ G    +   E
Sbjct: 414 LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFE 473

Query: 146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD 205
           AL +FR M ++ ++P+ +T+I+ L+ CA +  L  G  +H +V +     +  + N L+D
Sbjct: 474 ALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLD 532

Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
           +Y R G + +A   F   H++ +VSWN ++ G+  +G    A+E FN M +     DEV+
Sbjct: 533 LYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591

Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
           F   L ACS +G++  GL+YF  M++ Y ++P ++H+ C+
Sbjct: 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  142 bits (360), Expect = 4e-38
 Identities = 77/256 (30%), Positives = 125/256 (48%), Gaps = 20/256 (7%)

Query: 46  VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP----------- 94
           + W + IS +  +G  LE    F  MR    +P  +T  +++S C               
Sbjct: 254 ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGY 313

Query: 95  ------SNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF--WTALLNGFVKRDYFEEA 146
                 + +V V  +L+ MY   G    A  VF  M   D   WTA+++G+ K    ++A
Sbjct: 314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKA 373

Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV 206
           LE + +M+   V PD +TI SVL+ CA +  L +G+ +H    ++     V V N L+++
Sbjct: 374 LETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433

Query: 207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSF 266
           YS+  CI+ A +VF  + ++ ++SW SII G  +N    EAL +F  M     K + V+ 
Sbjct: 434 YSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM-LLTLKPNSVTL 492

Query: 267 TGALTACSHAGLIEDG 282
             AL+AC+  G +  G
Sbjct: 493 IAALSACARIGALMCG 508

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  141 bits (358), Expect = 1e-37
 Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 19/256 (7%)

Query: 48  WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP------------- 94
           W   +  + ++G   EA   + RM   G  P   TF  +L  C   P             
Sbjct: 155 WNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV 214

Query: 95  ----SNNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALE 148
                 +V V  AL+ MY K G +  A +VFD M  R C  W A+++G+ +     E LE
Sbjct: 215 RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLE 274

Query: 149 YFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS 208
            F  M+   V+PD +TI SV++ C  +    +G  MH YV K  F  +V VCN+L+ +Y 
Sbjct: 275 LFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL 334

Query: 209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG 268
             G    A +VF RM  +  VSW ++I G+  NG   +ALE + LM++     DE++   
Sbjct: 335 SLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394

Query: 269 ALTACSHAGLIEDGLQ 284
            L+AC+  G ++ G++
Sbjct: 395 VLSACACLGDLDVGVK 410

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  135 bits (342), Expect = 1e-35
 Identities = 86/280 (30%), Positives = 137/280 (48%), Gaps = 21/280 (7%)

Query: 46  VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------- 95
             W + I     +G   EA   F  M   G++    TFV +L   A   S          
Sbjct: 190 ASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCC 249

Query: 96  -------NNVMVSTALLDMYAKFGRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEA 146
                   +  VS AL+DMY+K G ++ A  VFD M  +    W ++L G+    Y EEA
Sbjct: 250 VLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEA 309

Query: 147 LEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT-LMD 205
           L  +  M+ SGV  D  T   ++ + + +  L      H  + +  F  ++ V NT L+D
Sbjct: 310 LCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI-VANTALVD 368

Query: 206 VYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS 265
           +YS++G +E AR VF RM ++ L+SWN++I G+  +G   +A+E F  M       + V+
Sbjct: 369 LYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVT 428

Query: 266 FTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI 305
           F   L+AC ++GL E G + F  M + +R+ P+  H+ C+
Sbjct: 429 FLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  115 bits (290), Expect = 1e-28
 Identities = 81/272 (29%), Positives = 126/272 (46%), Gaps = 24/272 (8%)

Query: 22  NQNLKKRPQ-ISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSH 80
           N + +KR + +S+  ++S ST D+     S +   C  G + +A      M+        
Sbjct: 31  NFHGRKRSRGLSVAASSSSSTHDSN----SQLRALCSHGQLEQALKLLESMQELRVPVDE 86

Query: 81  ITFVTLLSGC-----------------ADFPSNNVMVSTALLDMYAKFGRMDLATVVFDV 123
             +V L   C                 +  PS  V +  A+L M+ +FG +  A  VF  
Sbjct: 87  DAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGK 146

Query: 124 MRGCDF--WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG 181
           M   D   W  L+ G+ K  YF+EAL  +  M  +GV PD  T   VL  C  +  L  G
Sbjct: 147 MPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206

Query: 182 LWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVN 241
             +H +V +  F+ +V V N L+ +Y + G +  AR VF RM +R  +SWN++I G+  N
Sbjct: 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFEN 266

Query: 242 GFVGEALEYFNLMQKGVFKTDEVSFTGALTAC 273
           G   E LE F  M++     D ++ T  ++AC
Sbjct: 267 GECLEGLELFFTMRELSVDPDLMTITSVISAC 298

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  102 bits (256), Expect = 3e-24
 Identities = 82/305 (26%), Positives = 123/305 (40%), Gaps = 45/305 (14%)

Query: 23  QNLKKRP-----QISIQTNNSKSTI-------DTTVQWTSSISRHCRSGCILEA--ALEF 68
           Q LK RP      I I+ + SK           + V   S I +    G   EA    E 
Sbjct: 53  QGLKPRPRLKPEPIRIEVSESKDARLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEI 112

Query: 69  TRMRLYGTNPSHITFVTLLSGCADFPS-------NNVMVSTAL----------LDMYAKF 111
                  T P+  T+  L+  C    S          + S+            L M+ K 
Sbjct: 113 LEAGCPFTLPAS-TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC 171

Query: 112 GRMDLATVVFDVM--RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVL 169
           G +  A  +FD M  R    W  ++ G V    + EA   FR M   G + +  T + +L
Sbjct: 172 GMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML 231

Query: 170 NVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLV 229
              A + +   G  +H  V K     +  V   L+D+YS+ G IE AR VF  M ++T V
Sbjct: 232 RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTV 291

Query: 230 SWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS-----------HAGL 278
           +WNS++ G+A++G+  EAL  +  M+      D+ +F+  +   S           HAGL
Sbjct: 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGL 351

Query: 279 IEDGL 283
           I  G 
Sbjct: 352 IRTGF 356

Length = 697

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 54.1 bits (130), Expect = 5e-08
 Identities = 54/248 (21%), Positives = 98/248 (39%), Gaps = 31/248 (12%)

Query: 56  CRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMD 115
           C+    ++ A  F ++     NP+  TF  L+S CA              D+      + 
Sbjct: 416 CKKQRAVKEAFRFAKLIR---NPTLSTFNMLMSVCASSQ-----------DIDGALRVLR 461

Query: 116 LATVVFDVMRG----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNV 171
           L         G    C  +T L++   K    +   E F  M  +GVE +  T  ++++ 
Sbjct: 462 LVQ-----EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG 516

Query: 172 CANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL--- 228
           CA    +      +  +  ++ K +  V N L+    + G ++ A  V   M   T    
Sbjct: 517 CARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPID 576

Query: 229 ---VSWNSIIVGFAVNGFVGEALEYFNLMQK-GVFKTDEVSFTGALTACSHAGLIEDGLQ 284
              ++  +++   A  G V  A E + ++ +  +  T EV +T A+ +CS  G  +  L 
Sbjct: 577 PDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV-YTIAVNSCSQKGDWDFALS 635

Query: 285 YFDIMKKI 292
            +D MKK 
Sbjct: 636 IYDDMKKK 643

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 40.5 bits (96), Expect = 2e-05
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPD---YLTIISVL 169
           +  L++G+ K+   EEAL+ F  M+  G++P+   Y  +I  L
Sbjct: 6   YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 37.8 bits (89), Expect = 2e-04
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPD 161
           +  L++G  K    EEALE F+ M+  G+EPD
Sbjct: 3   YNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 37.4 bits (88), Expect = 2e-04
 Identities = 12/28 (42%), Positives = 19/28 (67%)

Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQK 256
           V++NS+I G+   G + EALE F  M++
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKE 28

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 37.8 bits (89), Expect = 3e-04
 Identities = 14/47 (29%), Positives = 26/47 (55%)

Query: 229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH 275
           V++N++I G+   G V EAL+ FN M+K   K +  +++  +     
Sbjct: 4   VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 35.5 bits (83), Expect = 0.001
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 130 WTALLNGFVKRDYFEEALEYFRVMQISGV 158
           + +L++G+ K    EEALE F+ M+  GV
Sbjct: 3   YNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHKR----TLVSWNSIIVGFA 239
           +V   NTL+D Y + G +E A ++F  M KR     + +++ +I G  
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 34.7 bits (81), Expect = 0.003
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 198 RVCNTLMDVYSRFGCIEFARQVFQRMHKR 226
              NTL+D   + G +E A ++F+ M +R
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKER 29

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	305
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.83
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.79
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.73
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.71
PF13041	50	PPR_2: PPR repeat family	99.58
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.58
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.55
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.55
PF13041	50	PPR_2: PPR repeat family	99.53
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.49
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.48
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.48
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.47
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.46
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.44
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.42
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.41
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.4
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.38
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.37
KOG1126	638	consensus DNA-binding cell division cycle control	99.36
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.33
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.3
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.27
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.26
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.25
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.25
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.25
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.25
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.19
PRK12370	553	invasion protein regulator; Provisional	99.17
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.17
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.16
PRK14574	822	hmsH outer membrane protein; Provisional	99.12
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.11
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.1
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.08
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.07
KOG2003	840	consensus TPR repeat-containing protein [General f	99.06
PRK12370	553	invasion protein regulator; Provisional	99.05
KOG1126	638	consensus DNA-binding cell division cycle control	99.04
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.04
PRK14574	822	hmsH outer membrane protein; Provisional	98.99
PF12854	34	PPR_1: PPR repeat	98.98
KOG1129	478	consensus TPR repeat-containing protein [General f	98.97
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.95
KOG2003	840	consensus TPR repeat-containing protein [General f	98.94
PRK11189	296	lipoprotein NlpI; Provisional	98.92
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.91
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.91
PF12854	34	PPR_1: PPR repeat	98.91
PRK11189	296	lipoprotein NlpI; Provisional	98.87
KOG1129	478	consensus TPR repeat-containing protein [General f	98.81
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.77
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	98.76
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.76
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.73
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.71
KOG2076	895	consensus RNA polymerase III transcription factor	98.68
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.68
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.66
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.65
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.64
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.62
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.6
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.6
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.59
KOG2076	895	consensus RNA polymerase III transcription factor	98.56
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.56
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.52
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.52
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.52
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.5
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.5
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.48
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.47
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.46
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.44
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.44
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.43
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.39
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.37
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.35
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.35
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.33
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.33
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.31
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.28
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.28
PRK15359	144	type III secretion system chaperone protein SscB;	98.27
PLN02789	320	farnesyltranstransferase	98.25
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.25
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.23
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.23
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.22
KOG1125	579	consensus TPR repeat-containing protein [General f	98.22
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.19
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.18
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.16
PRK15359	144	type III secretion system chaperone protein SscB;	98.15
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.13
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.13
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.13
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.13
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.11
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.09
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.09
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.06
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.06
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.04
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.03
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.02
PRK04841	903	transcriptional regulator MalT; Provisional	98.01
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.0
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.99
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.98
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.97
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.97
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.96
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.95
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.91
KOG1125	579	consensus TPR repeat-containing protein [General f	97.91
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.91
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.89
KOG2047	835	consensus mRNA splicing factor [RNA processing and	97.88
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.85
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.84
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.83
PRK04841	903	transcriptional regulator MalT; Provisional	97.8
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.79
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.78
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.77
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.75
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.71
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.71
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.7
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.69
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.67
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.66
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.65
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.65
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.64
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.64
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.63
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.63
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.62
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.57
PF12688	120	TPR_5: Tetratrico peptide repeat	97.55
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.55
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.53
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.49
PLN02789	320	farnesyltranstransferase	97.48
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.45
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.4
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.4
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.38
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.37
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.36
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.34
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.31
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.29
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.27
KOG0553	304	consensus TPR repeat-containing protein [General f	97.26
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.24
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.22
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.19
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.16
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.15
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.12
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.07
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.07
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.05
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.04
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.02
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.01
PF12688	120	TPR_5: Tetratrico peptide repeat	96.98
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.98
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.95
KOG0553	304	consensus TPR repeat-containing protein [General f	96.93
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	96.91
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.86
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.84
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.84
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	96.82
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.81
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.76
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.74
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.72
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	96.71
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.71
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.7
PRK10803	263	tol-pal system protein YbgF; Provisional	96.64
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.61
KOG3941	406	consensus Intermediate in Toll signal transduction	96.59
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.57
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.57
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.45
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	96.41
PF13371	73	TPR_9: Tetratricopeptide repeat	96.28
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.27
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.26
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.19
PRK10803	263	tol-pal system protein YbgF; Provisional	96.17
KOG3941	406	consensus Intermediate in Toll signal transduction	96.15
PF13371	73	TPR_9: Tetratricopeptide repeat	96.08
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.05
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.03
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.96
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.95
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	95.87
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	95.84
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.83
KOG2041	1189	consensus WD40 repeat protein [General function pr	95.8
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.75
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.74
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	95.73
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.72
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	95.69
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	95.63
COG3898	531	Uncharacterized membrane-bound protein [Function u	95.62
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.59
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	95.56
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	95.48
PRK15331	165	chaperone protein SicA; Provisional	94.98
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.94
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.87
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	94.65
KOG1585	308	consensus Protein required for fusion of vesicles	94.46
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	94.37
PRK15331	165	chaperone protein SicA; Provisional	94.31
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	94.18
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	94.12
COG4105	254	ComL DNA uptake lipoprotein [General function pred	94.12
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	94.07
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	94.01
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	93.81
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.8
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	93.8
PF13512	142	TPR_18: Tetratricopeptide repeat	93.67
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.56
KOG2610	491	consensus Uncharacterized conserved protein [Funct	93.48
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	93.42
KOG4570	418	consensus Uncharacterized conserved protein [Funct	93.28
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.23
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.2
KOG1585	308	consensus Protein required for fusion of vesicles	93.12
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	92.95
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.51
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	92.42
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	92.41
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	92.33
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.22
PF13428	44	TPR_14: Tetratricopeptide repeat	92.11
PF13428	44	TPR_14: Tetratricopeptide repeat	91.93
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	91.77
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	91.74
PF13929	292	mRNA_stabil: mRNA stabilisation	91.71
PF13431	34	TPR_17: Tetratricopeptide repeat	91.55
KOG4555	175	consensus TPR repeat-containing protein [Function	91.49
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	91.47
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	91.33
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	91.32
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	91.22
PF13762	145	MNE1: Mitochondrial splicing apparatus component	90.96
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	90.53
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	90.33
KOG1941	518	consensus Acetylcholine receptor-associated protei	90.09
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	89.52
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	89.39
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	89.38
KOG2297	412	consensus Predicted translation factor, contains W	89.3
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	88.85
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	88.72
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	88.72
COG3118	304	Thioredoxin domain-containing protein [Posttransla	88.52
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	88.44
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	88.34
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	88.31
KOG4570	418	consensus Uncharacterized conserved protein [Funct	87.67
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	87.18
PF13929	292	mRNA_stabil: mRNA stabilisation	87.16
TIGR01503	480	MthylAspMut_E methylaspartate mutase, E subunit. T	86.75
COG0457	291	NrfG FOG: TPR repeat [General function prediction	86.74
PF13512	142	TPR_18: Tetratricopeptide repeat	86.66
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	86.56
PRK11906	458	transcriptional regulator; Provisional	86.16
COG3898	531	Uncharacterized membrane-bound protein [Function u	85.8
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	85.4
KOG1586	288	consensus Protein required for fusion of vesicles	85.25
KOG4555	175	consensus TPR repeat-containing protein [Function	84.86
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	84.73
COG3118	304	Thioredoxin domain-containing protein [Posttransla	84.71
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	84.7
KOG1258	577	consensus mRNA processing protein [RNA processing	84.67
COG1747	711	Uncharacterized N-terminal domain of the transcrip	84.66
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	84.55
PF11848	48	DUF3368: Domain of unknown function (DUF3368); Int	84.54
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	84.36
PF10366	108	Vps39_1: Vacuolar sorting protein 39 domain 1; Int	84.31
PF11848	48	DUF3368: Domain of unknown function (DUF3368); Int	84.24
KOG2041	1189	consensus WD40 repeat protein [General function pr	84.22
PRK11906	458	transcriptional regulator; Provisional	83.76
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	83.52
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	83.32
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	83.28
COG4455	273	ImpE Protein of avirulence locus involved in tempe	83.15
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	82.68
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	82.47
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	81.85
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	81.73
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	81.43
COG0457	291	NrfG FOG: TPR repeat [General function prediction	81.3
KOG1550	552	consensus Extracellular protein SEL-1 and related	80.86

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.3e-50  Score=370.08  Aligned_cols=272  Identities=31%  Similarity=0.489  Sum_probs=264.3

Q ss_pred             ccccCCCCCCchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC-----------------C
Q 036263           34 QTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-----------------N   96 (305)
Q Consensus        34 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----------------~   96 (305)
                      ...++++++||.++||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.+.                 +
T Consensus       178 ~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~  257 (697)
T PLN03081        178 RRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG  257 (697)
T ss_pred             HHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCc
Confidence            44578888999999999999999999999999999999999999999999999999998876                 8


Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhcCc--cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 036263           97 NVMVSTALLDMYAKFGRMDLATVVFDVMRG--CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN  174 (305)
Q Consensus        97 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~  174 (305)
                      |..+|++|+++|++.|++++|.++|+.|+.  ..+||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++
T Consensus       258 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~  337 (697)
T PLN03081        258 DTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR  337 (697)
T ss_pred             cceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence            999999999999999999999999999976  778999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 036263          175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM  254 (305)
Q Consensus       175 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  254 (305)
                      .|++++|.+++..|.+.|+.||..+|++||++|++.|++++|.++|++|.+||+.+||.||.+|+++|+.++|.++|++|
T Consensus       338 ~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M  417 (697)
T PLN03081        338 LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERM  417 (697)
T ss_pred             ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCccccccC
Q 036263          255 QKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI  305 (305)
Q Consensus       255 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l  305 (305)
                      .+.|+.||..||+.++.+|++.|.+++|.++|+.|.+..|+.|+..||++|
T Consensus       418 ~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l  468 (697)
T PLN03081        418 IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM  468 (697)
T ss_pred             HHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence            999999999999999999999999999999999999678999999999985

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=2.6e-49  Score=365.91  Aligned_cols=285  Identities=18%  Similarity=0.268  Sum_probs=248.0

Q ss_pred             chhhhhhcCCCCCccccccCCCCCCchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC---
Q 036263           19 QNRNQNLKKRPQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---   95 (305)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---   95 (305)
                      +.+.+.+.....++.++. +....||..+||.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.++   
T Consensus       482 y~k~G~vd~A~~vf~eM~-~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~de  560 (1060)
T PLN03218        482 CAKSGKVDAMFEVFHEMV-NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDR  560 (1060)
T ss_pred             HHhCcCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence            444444444444444443 4456788888888888888888888888888888888888888888888888887776   


Q ss_pred             ----------------CChhHHHHHHHHHHhcCChHHHHHHHHhcCc------cccHHHHHHHHHcCCChHHHHHHHHHH
Q 036263           96 ----------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRG------CDFWTALLNGFVKRDYFEEALEYFRVM  153 (305)
Q Consensus        96 ----------------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m  153 (305)
                                      ||..+|++++.+|++.|++++|.++|+.|.+      ..+|+.+|.+|++.|++++|.++|++|
T Consensus       561 A~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM  640 (1060)
T PLN03218        561 AFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM  640 (1060)
T ss_pred             HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence                            7888899999999999999999999988865      467999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc----cCchh
Q 036263          154 QISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH----KRTLV  229 (305)
Q Consensus       154 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~  229 (305)
                      .+.|+.||..||++++.+|++.|++++|.+++++|.+.|+.|+..+|+++|.+|++.|++++|.++|++|.    .||..
T Consensus       641 ~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvv  720 (1060)
T PLN03218        641 KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVS  720 (1060)
T ss_pred             HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999996    58999


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCccccccC
Q 036263          230 SWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI  305 (305)
Q Consensus       230 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l  305 (305)
                      +|+.||.+|++.|++++|.++|++|...|+.||..||+.++.+|++.|++++|.+++++|. ..|+.||..+|++|
T Consensus       721 tyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~-k~Gi~pd~~tynsL  795 (1060)
T PLN03218        721 TMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK-EDGIKPNLVMCRCI  795 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999998 88999999988864

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.5e-47  Score=354.29  Aligned_cols=267  Identities=19%  Similarity=0.209  Sum_probs=218.3

Q ss_pred             CCCCCCchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC-----------------CChhH
Q 036263           38 SKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-----------------NNVMV  100 (305)
Q Consensus        38 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----------------~~~~~  100 (305)
                      +....||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.++                 ||..+
T Consensus       465 ~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vT  544 (1060)
T PLN03218        465 EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV  544 (1060)
T ss_pred             HcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHH
Confidence            4556677777777777777777777777777777777777777777777777777777                 77788


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhcCc--------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 036263          101 STALLDMYAKFGRMDLATVVFDVMRG--------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVC  172 (305)
Q Consensus       101 ~~~ll~~~~~~g~~~~a~~~~~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~  172 (305)
                      |+.+|.+|++.|++++|.++|++|..        ..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+++|.+|
T Consensus       545 YnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay  624 (1060)
T PLN03218        545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSC  624 (1060)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence            88888888888888888888877732        4568888888888888888888888888888888888888888888


Q ss_pred             cCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc----CchhhHHHHHHHHHhcCChHHHH
Q 036263          173 ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK----RTLVSWNSIIVGFAVNGFVGEAL  248 (305)
Q Consensus       173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~  248 (305)
                      ++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+    ||..+|+.+|.+|++.|++++|.
T Consensus       625 ~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~  704 (1060)
T PLN03218        625 SQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL  704 (1060)
T ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence            88888888888888888888888888888888888888888888888888873    67888888888888888888888


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCccccccC
Q 036263          249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI  305 (305)
Q Consensus       249 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l  305 (305)
                      ++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. ..|+.||..||++|
T Consensus       705 ~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~-~~Gi~Pd~~Ty~sL  760 (1060)
T PLN03218        705 ELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK-RLGLCPNTITYSIL  760 (1060)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCCHHHHHHH
Confidence            888888888888888888888888888888888888888888 78888888888753

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=3.5e-47  Score=354.89  Aligned_cols=272  Identities=31%  Similarity=0.588  Sum_probs=251.2

Q ss_pred             ccccCCCCCCchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC-----------------C
Q 036263           34 QTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-----------------N   96 (305)
Q Consensus        34 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----------------~   96 (305)
                      ...++++++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.++                 |
T Consensus       242 ~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~  321 (857)
T PLN03077        242 RLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV  321 (857)
T ss_pred             HHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc
Confidence            44578889999999999999999999999999999999999999999999999999999888                 8


Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhcCc--cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 036263           97 NVMVSTALLDMYAKFGRMDLATVVFDVMRG--CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN  174 (305)
Q Consensus        97 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~  174 (305)
                      |..+|++|+.+|++.|++++|.++|+.|+.  ..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++
T Consensus       322 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~  401 (857)
T PLN03077        322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACAC  401 (857)
T ss_pred             chHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhc
Confidence            999999999999999999999999999965  778999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCc---------------------------
Q 036263          175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT---------------------------  227 (305)
Q Consensus       175 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---------------------------  227 (305)
                      .|++++|.++++.+.+.|+.|+..+|++||++|++.|++++|.++|++|.++|                           
T Consensus       402 ~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m  481 (857)
T PLN03077        402 LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM  481 (857)
T ss_pred             cchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998886544                           


Q ss_pred             ------------------------------------------------------------------------hhhHHHHH
Q 036263          228 ------------------------------------------------------------------------LVSWNSII  235 (305)
Q Consensus       228 ------------------------------------------------------------------------~~~~~~li  235 (305)
                                                                                              +.+||++|
T Consensus       482 ~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI  561 (857)
T PLN03077        482 LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILL  561 (857)
T ss_pred             HhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHH
Confidence                                                                                    34567777


Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCccccccC
Q 036263          236 VGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI  305 (305)
Q Consensus       236 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l  305 (305)
                      .+|+++|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+..|+.|+.+||+||
T Consensus       562 ~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l  631 (857)
T PLN03077        562 TGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV  631 (857)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence            7778888888888888888888899999999999999999999999999999998778999998888875

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=8.4e-47  Score=352.37  Aligned_cols=272  Identities=30%  Similarity=0.518  Sum_probs=263.0

Q ss_pred             cccccCCCCCCchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC-----------------
Q 036263           33 IQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS-----------------   95 (305)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----------------   95 (305)
                      ....+++|++||+++||.+|.+|++.|++++|+++|++|...|+.||..||++++++|+..++                 
T Consensus       140 A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~  219 (857)
T PLN03077        140 AWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFE  219 (857)
T ss_pred             HHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCC
Confidence            345578889999999999999999999999999999999999999999999999999988766                 


Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHhcCc--cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 036263           96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRG--CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCA  173 (305)
Q Consensus        96 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~  173 (305)
                      |+..++++|+.+|++.|+++.|.++|+.|+.  ..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+
T Consensus       220 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~  299 (857)
T PLN03077        220 LDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACE  299 (857)
T ss_pred             cccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Confidence            8999999999999999999999999999976  77899999999999999999999999999999999999999999999


Q ss_pred             CcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 036263          174 NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNL  253 (305)
Q Consensus       174 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  253 (305)
                      +.|+.+.|.+++..+.+.|+.||..+|++++.+|++.|++++|.++|++|.+||+.+||.+|.+|++.|++++|.++|++
T Consensus       300 ~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~  379 (857)
T PLN03077        300 LLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYAL  379 (857)
T ss_pred             hcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCccccccC
Q 036263          254 MQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI  305 (305)
Q Consensus       254 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l  305 (305)
                      |.+.|+.||..||+.++.+|++.|++++|.++++.|. ..|+.|+..+|++|
T Consensus       380 M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~-~~g~~~~~~~~n~L  430 (857)
T PLN03077        380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAE-RKGLISYVVVANAL  430 (857)
T ss_pred             HHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHH-HhCCCcchHHHHHH
Confidence            9999999999999999999999999999999999999 99999999988864

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=5e-43  Score=320.19  Aligned_cols=262  Identities=26%  Similarity=0.347  Sum_probs=253.9

Q ss_pred             CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHhhHHHHHHhhcCCCC-----------------CChhHHHHH
Q 036263           43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYG-TNPSHITFVTLLSGCADFPS-----------------NNVMVSTAL  104 (305)
Q Consensus        43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~-----------------~~~~~~~~l  104 (305)
                      ++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++                 |+..+|+.+
T Consensus        85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L  164 (697)
T PLN03081         85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV  164 (697)
T ss_pred             CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence            466799999999999999999999999999864 88999999999999999887                 999999999


Q ss_pred             HHHHHhcCChHHHHHHHHhcCc--cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHH
Q 036263          105 LDMYAKFGRMDLATVVFDVMRG--CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL  182 (305)
Q Consensus       105 l~~~~~~g~~~~a~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~  182 (305)
                      +.+|++.|+++.|.++|++|++  ..+||++|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|+..|..+.+.
T Consensus       165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~  244 (697)
T PLN03081        165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ  244 (697)
T ss_pred             HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence            9999999999999999999976  77899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 036263          183 WMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD  262 (305)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~  262 (305)
                      +++..+.+.|+.+|..+|++||++|++.|++++|.++|++|.++|+.+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus       245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd  324 (697)
T PLN03081        245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID  324 (697)
T ss_pred             HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCccccccC
Q 036263          263 EVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHGCI  305 (305)
Q Consensus       263 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l  305 (305)
                      ..||+.++.+|++.|++++|.++++.|. +.|+.||..+|++|
T Consensus       325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~-~~g~~~d~~~~~~L  366 (697)
T PLN03081        325 QFTFSIMIRIFSRLALLEHAKQAHAGLI-RTGFPLDIVANTAL  366 (697)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHH-HhCCCCCeeehHHH
Confidence            9999999999999999999999999999 89999999999864

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.83  E-value=8.4e-18  Score=144.63  Aligned_cols=253  Identities=11%  Similarity=0.000  Sum_probs=193.7

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HhhHHHHHHhhcCCCC----------------CChhHHHHH
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPS---HITFVTLLSGCADFPS----------------NNVMVSTAL  104 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~----------------~~~~~~~~l  104 (305)
                      +..+|..+...+.+.|++++|..+++.+.+.+..++   ...+..+...+.+.++                .+..++..+
T Consensus        68 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l  147 (389)
T PRK11788         68 TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQL  147 (389)
T ss_pred             cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHH
Confidence            556788888899999999999999999887543222   2345555666665555                456678888


Q ss_pred             HHHHHhcCChHHHHHHHHhcCcc----------ccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 036263          105 LDMYAKFGRMDLATVVFDVMRGC----------DFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN  174 (305)
Q Consensus       105 l~~~~~~g~~~~a~~~~~~~~~~----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~  174 (305)
                      +..+.+.|++++|.+.++.+...          ..+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+
T Consensus       148 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~  226 (389)
T PRK11788        148 LEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALA  226 (389)
T ss_pred             HHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHH
Confidence            88888899999998888887441          124556677788899999999998887643 2245577778888888


Q ss_pred             cCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--CchhhHHHHHHHHHhcCChHHHHHHHH
Q 036263          175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RTLVSWNSIIVGFAVNGFVGEALEYFN  252 (305)
Q Consensus       175 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~  252 (305)
                      .|++++|.++++++.+.+......+++.+..+|.+.|++++|...++++.+  |+...+..+...+.+.|++++|..+++
T Consensus       227 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~  306 (389)
T PRK11788        227 QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLR  306 (389)
T ss_pred             CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHH
Confidence            999999999999888764222346678888889999999999999888763  666667888888999999999999998


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHhc---cCcHHHHHHHHHHHHHHhCCCCCcc
Q 036263          253 LMQKGVFKTDEVSFTGALTACSH---AGLIEDGLQYFDIMKKIYRVSPQIE  300 (305)
Q Consensus       253 ~m~~~g~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~p~~~  300 (305)
                      ++.+.  .|+..++..++..+..   .|+.+++..+++.|. ..++.|++.
T Consensus       307 ~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~-~~~~~~~p~  354 (389)
T PRK11788        307 EQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV-GEQLKRKPR  354 (389)
T ss_pred             HHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH-HHHHhCCCC
Confidence            88774  5888888888877664   458888999999888 777777775

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.79  E-value=9.2e-17  Score=138.19  Aligned_cols=244  Identities=13%  Similarity=0.026  Sum_probs=199.2

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHhhcCCCC--------------CC------hhHHHHHHHHHHh
Q 036263           52 ISRHCRSGCILEAALEFTRMRLYGTNP-SHITFVTLLSGCADFPS--------------NN------VMVSTALLDMYAK  110 (305)
Q Consensus        52 i~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~--------------~~------~~~~~~ll~~~~~  110 (305)
                      ...+...|++++|+..|.++.+.  .| +..++..+...+...++              |+      ...+..+...|.+
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~  119 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK  119 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            33456789999999999999985  44 45577777777777776              22      2467888999999


Q ss_pred             cCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhcCcCChhHH
Q 036263          111 FGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD----YLTIISVLNVCANVRTLGIG  181 (305)
Q Consensus       111 ~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a  181 (305)
                      .|+++.|..+|+++.+     ..+++.++..+.+.|++++|.+.++.+.+.+..+.    ...+..+...+...|++++|
T Consensus       120 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  199 (389)
T PRK11788        120 AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA  199 (389)
T ss_pred             CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence            9999999999999964     45688999999999999999999999987653332    22455677788899999999


Q ss_pred             HHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--Cc--hhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263          182 LWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RT--LVSWNSIIVGFAVNGFVGEALEYFNLMQKG  257 (305)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  257 (305)
                      ...++++.+.. +.+...+..+...|.+.|++++|.++++++.+  |+  ..+++.++.+|...|++++|...++++.+.
T Consensus       200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~  278 (389)
T PRK11788        200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE  278 (389)
T ss_pred             HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            99999998865 44577888899999999999999999999984  33  356788999999999999999999999885


Q ss_pred             CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCccccc
Q 036263          258 VFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHG  303 (305)
Q Consensus       258 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~  303 (305)
                        .|+...+..+...+.+.|++++|..+++++. .  ..|+...+.
T Consensus       279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l-~--~~P~~~~~~  319 (389)
T PRK11788        279 --YPGADLLLALAQLLEEQEGPEAAQALLREQL-R--RHPSLRGFH  319 (389)
T ss_pred             --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHH-H--hCcCHHHHH
Confidence              4777777888999999999999999999888 2  357665543

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.73  E-value=9.7e-15  Score=138.27  Aligned_cols=242  Identities=12%  Similarity=0.078  Sum_probs=142.2

Q ss_pred             CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC----------------CChhHHHHHHH
Q 036263           43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----------------NNVMVSTALLD  106 (305)
Q Consensus        43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------------~~~~~~~~ll~  106 (305)
                      .+...|..+...+.+.|++++|...|+++.+.. +.+...+..+...+...++                .+...+..+..
T Consensus       599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  677 (899)
T TIGR02917       599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQ  677 (899)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            456778888888888888888888888887642 2344556666666655555                34566777777


Q ss_pred             HHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHH
Q 036263          107 MYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG  181 (305)
Q Consensus       107 ~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a  181 (305)
                      .+.+.|++++|.++++.+..     ...+..+...+...|++++|.+.|+++...  .|+..++..+..++.+.|++++|
T Consensus       678 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A  755 (899)
T TIGR02917       678 LLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEA  755 (899)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHH
Confidence            77777777777777777643     334566666667777777777777766654  34445555566666666666666


Q ss_pred             HHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 036263          182 LWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV  258 (305)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  258 (305)
                      .+.++.+.+.. +.+...+..+...|...|+.++|.+.|+++.+   .+...++.+...+...|+ ++|..++++..+..
T Consensus       756 ~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~  833 (899)
T TIGR02917       756 VKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA  833 (899)
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence            66666665543 44555666666666666666666666666542   233444444444444444 44444444444321


Q ss_pred             CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       259 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                       +-+..++..+...+...|++++|.++++.+.
T Consensus       834 -~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~  864 (899)
T TIGR02917       834 -PNIPAILDTLGWLLVEKGEADRALPLLRKAV  864 (899)
T ss_pred             -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence             1122333334444444444444444444444

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.71  E-value=2.7e-14  Score=135.32  Aligned_cols=242  Identities=11%  Similarity=0.002  Sum_probs=128.4

Q ss_pred             hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC----------------CChhHHHHHHHHH
Q 036263           45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----------------NNVMVSTALLDMY  108 (305)
Q Consensus        45 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------------~~~~~~~~ll~~~  108 (305)
                      ..++..+...+.+.|+.++|...|+++.+.+ +.+...+..+...+...++                .+...|..+..++
T Consensus       533 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  611 (899)
T TIGR02917       533 LRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQ  611 (899)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            3444444444444555555555554444321 1223333333333333333                3344555555556


Q ss_pred             HhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHH
Q 036263          109 AKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLW  183 (305)
Q Consensus       109 ~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~  183 (305)
                      .+.|++++|...|+.+..     ...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|..
T Consensus       612 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~  690 (899)
T TIGR02917       612 LAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKK  690 (899)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            666666666665555432     2335555555555666666666665554431 2234555555555555666666666


Q ss_pred             HHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 036263          184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT  261 (305)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  261 (305)
                      +++.+.+.+ +.+...+..+...+.+.|++++|.+.|+++..  |+..++..+..++...|++++|.+.++++.+.. +.
T Consensus       691 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~  768 (899)
T TIGR02917       691 IAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PN  768 (899)
T ss_pred             HHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence            665555544 34455555556666666666666666665542  333455555566666666666666666655542 33


Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          262 DEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       262 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      +...+..+...|.+.|++++|.++|+.+.
T Consensus       769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~  797 (899)
T TIGR02917       769 DAVLRTALAELYLAQKDYDKAIKHYRTVV  797 (899)
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            45555566666666666666666666665

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13041 PPR_2: PPR repeat family

Probab=99.58  E-value=6.5e-15  Score=86.87  Aligned_cols=50  Identities=28%  Similarity=0.468  Sum_probs=48.3

Q ss_pred             CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcC
Q 036263           43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD   92 (305)
Q Consensus        43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~   92 (305)
                      ||+++||++|++|++.|++++|.++|++|.+.|++||..||+++|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            89999999999999999999999999999999999999999999999864

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.58  E-value=9.8e-13  Score=107.54  Aligned_cols=235  Identities=17%  Similarity=0.157  Sum_probs=185.1

Q ss_pred             CCchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036263           42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVF  121 (305)
Q Consensus        42 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~  121 (305)
                      ..+..+|..+|.++|+.-..+.|.++|++-.+...+.+..+||.+|.+.+                |.+ |.---++-+-
T Consensus       204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----------------~~~-~K~Lv~EMis  266 (625)
T KOG4422|consen  204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----------------YSV-GKKLVAEMIS  266 (625)
T ss_pred             CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----------------hhc-cHHHHHHHHH
Confidence            35678999999999999999999999999999989999999999887631                222 2212223333


Q ss_pred             Hhc-CccccHHHHHHHHHcCCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhH-HHHHHHHHh----hc
Q 036263          122 DVM-RGCDFWTALLNGFVKRDYFEE----ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGI-GLWMHRYVP----KQ  191 (305)
Q Consensus       122 ~~~-~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~----~~  191 (305)
                      ++| ++..|+|+++++..+.|+++.    |.+++.+|++-|++|+..+|..+|..+++.++..+ +..++.++.    ..
T Consensus       267 qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK  346 (625)
T KOG4422|consen  267 QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGK  346 (625)
T ss_pred             hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccC
Confidence            333 447889999999999887664    57788999999999999999999999999888755 333333332    22


Q ss_pred             CCC----CChhHHHHHHHHHHhcCChHHHHHHHHhccc--------C---chhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263          192 DFK----DNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--------R---TLVSWNSIIVGFAVNGFVGEALEYFNLMQK  256 (305)
Q Consensus       192 ~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  256 (305)
                      .+.    .|...|...+..|.+..+.+-|.++-.-++.        +   ...-|..+....|.....+....+|+.|.-
T Consensus       347 ~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP  426 (625)
T KOG4422|consen  347 TFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP  426 (625)
T ss_pred             cccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            232    3566778888999999999999888776652        1   223567778888999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhC
Q 036263          257 GVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYR  294 (305)
Q Consensus       257 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  294 (305)
                      .-+-|+..+...++++..-.|.++-..+++.++. .+|
T Consensus       427 ~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~-~~g  463 (625)
T KOG4422|consen  427 SAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSK-EYG  463 (625)
T ss_pred             ceecCCchhHHHHHHHHhhcCcchhHHHHHHHHH-Hhh
Confidence            8889999999999999999999999999999998 766

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.55  E-value=1.1e-11  Score=112.92  Aligned_cols=152  Identities=16%  Similarity=0.020  Sum_probs=71.8

Q ss_pred             HHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhH----HHHHHHHHhhcCCCCChhHHHHHHHHHHhc
Q 036263          135 NGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGI----GLWMHRYVPKQDFKDNVRVCNTLMDVYSRF  210 (305)
Q Consensus       135 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  210 (305)
                      ..+.+.|++++|...+++..+.. +.+...+..+...+...|++++    |...++...+.. +.+...+..+...+.+.
T Consensus       220 ~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~  297 (656)
T PRK15174        220 DTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRT  297 (656)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHC
Confidence            34444445555554444444321 1123344444444455555443    445555544432 23344555555555555


Q ss_pred             CChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCcHHHHHHHH
Q 036263          211 GCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS-FTGALTACSHAGLIEDGLQYF  286 (305)
Q Consensus       211 g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~a~~~~  286 (305)
                      |++++|...+++..+  | +...+..+..++...|++++|...++++...  .|+... +..+..++...|++++|...|
T Consensus       298 g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l  375 (656)
T PRK15174        298 GQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVF  375 (656)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence            555555555555442  2 2334444555555555555555555555543  233222 222334455555555555555


Q ss_pred             HHHH
Q 036263          287 DIMK  290 (305)
Q Consensus       287 ~~m~  290 (305)
                      +...
T Consensus       376 ~~al  379 (656)
T PRK15174        376 EHYI  379 (656)
T ss_pred             HHHH
Confidence            5554

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.55  E-value=2e-11  Score=111.15  Aligned_cols=239  Identities=9%  Similarity=-0.059  Sum_probs=188.0

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HhhHHHHHHhhcCCCC----------------CChhHHHHHHHHHH
Q 036263           47 QWTSSISRHCRSGCILEAALEFTRMRLYGTNPS-HITFVTLLSGCADFPS----------------NNVMVSTALLDMYA  109 (305)
Q Consensus        47 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~----------------~~~~~~~~ll~~~~  109 (305)
                      .+..+..+....|++++|.+.|+++.+.  .|+ ...+..+-..+...++                .+...+..+..++.
T Consensus        78 ~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~  155 (656)
T PRK15174         78 LLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLV  155 (656)
T ss_pred             HHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            3444446666799999999999998874  454 4455555555556666                44567888899999


Q ss_pred             hcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHH
Q 036263          110 KFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWM  184 (305)
Q Consensus       110 ~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~  184 (305)
                      ..|+.++|...++.+..     ...+..+ ..+...|++++|...++.+.+..-.++...+..+..++...|++++|...
T Consensus       156 ~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~  234 (656)
T PRK15174        156 LMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQT  234 (656)
T ss_pred             HCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHH
Confidence            99999999999987632     2223333 34788999999999999987654334455556667788999999999999


Q ss_pred             HHHHhhcCCCCChhHHHHHHHHHHhcCChHH----HHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263          185 HRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF----ARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG  257 (305)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  257 (305)
                      ++...+.. +.+...+..+...|...|++++    |...|++..+  | +...+..+...+...|++++|...+++..+.
T Consensus       235 ~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l  313 (656)
T PRK15174        235 GESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT  313 (656)
T ss_pred             HHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            99999875 5568888899999999999986    7999998874  3 5678899999999999999999999999885


Q ss_pred             CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          258 VFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       258 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      . +-+...+..+..++.+.|++++|...++.+.
T Consensus       314 ~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al  345 (656)
T PRK15174        314 H-PDLPYVRAMYARALRQVGQYTAASDEFVQLA  345 (656)
T ss_pred             C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3 2245667778889999999999999999888

>PF13041 PPR_2: PPR repeat family

Probab=99.53  E-value=3.8e-14  Score=83.60  Aligned_cols=50  Identities=26%  Similarity=0.449  Sum_probs=48.5

Q ss_pred             CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036263          226 RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH  275 (305)
Q Consensus       226 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~  275 (305)
                      ||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            78999999999999999999999999999999999999999999999975

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.49  E-value=5e-11  Score=108.49  Aligned_cols=223  Identities=13%  Similarity=0.055  Sum_probs=171.3

Q ss_pred             hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 036263           45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM  124 (305)
Q Consensus        45 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~  124 (305)
                      ...|+.+...+...|++++|+..|++..+.  .|+.                 ...|..+...+...|++++|...|+..
T Consensus       331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~-----------------~~~~~~la~~~~~~g~~~eA~~~~~~a  391 (615)
T TIGR00990       331 AIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRV-----------------TQSYIKRASMNLELGDPDKAEEDFDKA  391 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCc-----------------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            345666666666677777777777776652  3431                 234556667788899999999999887


Q ss_pred             Cc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChh
Q 036263          125 RG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR  198 (305)
Q Consensus       125 ~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  198 (305)
                      ..     ...|..+...+...|++++|...|++..+.  .| +...+..+...+.+.|++++|...++...+.. +.+..
T Consensus       392 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~  468 (615)
T TIGR00990       392 LKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPD  468 (615)
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChH
Confidence            44     566888889999999999999999998774  45 46677788888999999999999999988764 55688


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhccc--Cc-hh-------hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 036263          199 VCNTLMDVYSRFGCIEFARQVFQRMHK--RT-LV-------SWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG  268 (305)
Q Consensus       199 ~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-~~-------~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~  268 (305)
                      .++.+...+...|++++|.+.|++...  |+ ..       .++.....+...|++++|.+++++..+.. +.+...+..
T Consensus       469 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~  547 (615)
T TIGR00990       469 VYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVAT  547 (615)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence            899999999999999999999998763  21 11       12222333445799999999999987753 224457888


Q ss_pred             HHHHHhccCcHHHHHHHHHHHH
Q 036263          269 ALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       269 li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      +...+.+.|++++|...|+...
T Consensus       548 la~~~~~~g~~~eAi~~~e~A~  569 (615)
T TIGR00990       548 MAQLLLQQGDVDEALKLFERAA  569 (615)
T ss_pred             HHHHHHHccCHHHHHHHHHHHH
Confidence            9999999999999999999876

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.48  E-value=1.1e-10  Score=95.77  Aligned_cols=253  Identities=10%  Similarity=0.132  Sum_probs=193.7

Q ss_pred             CCCchHhHHHHHHHHHhcCChhH----HHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC---------------------
Q 036263           41 TIDTTVQWTSSISRHCRSGCILE----AALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------------------   95 (305)
Q Consensus        41 ~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------------------   95 (305)
                      ..||..|||+++.+.++.|+++.    |++++.+|++-|+.|+..+|..+|..+.+.++                     
T Consensus       269 m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f  348 (625)
T KOG4422|consen  269 MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF  348 (625)
T ss_pred             cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence            47999999999999999998875    56788999999999999999999999988887                     


Q ss_pred             -----CChhHHHHHHHHHHhcCChHHHHHHHHhcCc-------------cccHHHHHHHHHcCCChHHHHHHHHHHHHcC
Q 036263           96 -----NNVMVSTALLDMYAKFGRMDLATVVFDVMRG-------------CDFWTALLNGFVKRDYFEEALEYFRVMQISG  157 (305)
Q Consensus        96 -----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  157 (305)
                           .+...|...++.|.+..+.+.|.++-.-+..             ..-|..+....+.....+.-+..|+.|.-.-
T Consensus       349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~  428 (625)
T KOG4422|consen  349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA  428 (625)
T ss_pred             cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence                 4456677888888888899888888766543             1115566777778888888999999998887


Q ss_pred             CCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC-Ch--H-----------HHHHHHHhc
Q 036263          158 VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG-CI--E-----------FARQVFQRM  223 (305)
Q Consensus       158 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~--~-----------~a~~~~~~~  223 (305)
                      +-|+..+...++.+..-.+.++-.-+++..+...|...+...-.-++..+++.. ..  .           -|..+++..
T Consensus       429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~  508 (625)
T KOG4422|consen  429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAY  508 (625)
T ss_pred             ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence            888999999999999999999999999999988886666655555555555544 11  0           111111111


Q ss_pred             c---------cCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          224 H---------KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV----FKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       224 ~---------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      .         +-.....+.+.-.+.+.|..++|.+++....+.+    ..|......-++..-.+..+...|..+++-|.
T Consensus       509 e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~  588 (625)
T KOG4422|consen  509 ESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS  588 (625)
T ss_pred             HhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            1         1245567777788899999999999999985543    34444555577777778889999999998886


Q ss_pred             HHhC
Q 036263          291 KIYR  294 (305)
Q Consensus       291 ~~~~  294 (305)
                       .++
T Consensus       589 -~~n  591 (625)
T KOG4422|consen  589 -AFN  591 (625)
T ss_pred             -HcC
Confidence             443

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.48  E-value=4e-12  Score=112.29  Aligned_cols=258  Identities=15%  Similarity=0.082  Sum_probs=177.2

Q ss_pred             CCCccccccCCCCCCchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC------CChhHHH
Q 036263           29 PQISIQTNNSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------NNVMVST  102 (305)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~------~~~~~~~  102 (305)
                      |+-|....-..+..||.+||..+|.-||..|+++.|- +|.-|+-...+.+...|+.++.+...+++      |...+|.
T Consensus         9 ptnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt   87 (1088)
T KOG4318|consen    9 PTNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYT   87 (1088)
T ss_pred             cchHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHH
Confidence            3344444456667899999999999999999999999 99999988899999999999999888877      8889999


Q ss_pred             HHHHHHHhcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHhcCcCChhHH
Q 036263          103 ALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQ-ISGVEPDYLTIISVLNVCANVRTLGIG  181 (305)
Q Consensus       103 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~p~~~t~~~ll~~~~~~~~~~~a  181 (305)
                      .|+.+|...||+.. .+..++     -.-.++..+...|-......++..+. ..+.-||..+.   +.-....|-++.+
T Consensus        88 ~Ll~ayr~hGDli~-fe~veq-----dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~---illlv~eglwaql  158 (1088)
T KOG4318|consen   88 NLLKAYRIHGDLIL-FEVVEQ-----DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENA---ILLLVLEGLWAQL  158 (1088)
T ss_pred             HHHHHHHhccchHH-HHHHHH-----HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHH---HHHHHHHHHHHHH
Confidence            99999999999876 222222     12345556666666655555554432 22345554433   2223344555555


Q ss_pred             HHHHHHHhhcCCCCChhHHHHHHHHHHhcCC-hHHHHHHHHhccc-CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 036263          182 LWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC-IEFARQVFQRMHK-RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF  259 (305)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  259 (305)
                      .+++..+...... .....  +++-+..... +++-..+-+...+ ++..+|..++++-..+|+.+.|..++.+|++.|+
T Consensus       159 lkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf  235 (1088)
T KOG4318|consen  159 LKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF  235 (1088)
T ss_pred             HHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence            5555444222100 01111  2333322222 3333333333333 7888888888888888999999999999999998


Q ss_pred             CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCccccc
Q 036263          260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHG  303 (305)
Q Consensus       260 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~  303 (305)
                      +.+.+-|+.|+-+   .++...++.++..|. ..|+.|+.+||.
T Consensus       236 pir~HyFwpLl~g---~~~~q~~e~vlrgmq-e~gv~p~seT~a  275 (1088)
T KOG4318|consen  236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQ-EKGVQPGSETQA  275 (1088)
T ss_pred             Ccccccchhhhhc---CccchHHHHHHHHHH-HhcCCCCcchhH
Confidence            8888888888877   677888888888888 889999888874

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.47  E-value=1.4e-11  Score=105.39  Aligned_cols=49  Identities=8%  Similarity=0.068  Sum_probs=35.3

Q ss_pred             hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HhhHHHHHHhhcCCCC
Q 036263           45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPS-HITFVTLLSGCADFPS   95 (305)
Q Consensus        45 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~   95 (305)
                      ..+|..+-..+-..|++++|++.|+.+.+  ++|+ ...|..+-.++...++
T Consensus       116 ae~ysn~aN~~kerg~~~~al~~y~~aie--l~p~fida~inla~al~~~~~  165 (966)
T KOG4626|consen  116 AEAYSNLANILKERGQLQDALALYRAAIE--LKPKFIDAYINLAAALVTQGD  165 (966)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCC
Confidence            45788888888899999999999999887  4553 4555555555555555

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.46  E-value=9.9e-13  Score=107.90  Aligned_cols=223  Identities=16%  Similarity=0.140  Sum_probs=110.9

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-
Q 036263           46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM-  124 (305)
Q Consensus        46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~-  124 (305)
                      .-|..+.......+++++|.+.|+++...+..                   +...+..++.. ...++.++|.++++.. 
T Consensus        45 ~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-------------------~~~~~~~l~~l-~~~~~~~~A~~~~~~~~  104 (280)
T PF13429_consen   45 EYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-------------------NPQDYERLIQL-LQDGDPEEALKLAEKAY  104 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccc-------------------ccccccccccc-ccccccccccccccccc
Confidence            33333334444456666666666665543211                   12233444444 5778888888877655 


Q ss_pred             ---CccccHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHH
Q 036263          125 ---RGCDFWTALLNGFVKRDYFEEALEYFRVMQISG-VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC  200 (305)
Q Consensus       125 ---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  200 (305)
                         .+...+..++..+.+.|+++++.++++...... .+++...|..+...+.+.|+.++|...+++..+.. |.|....
T Consensus       105 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~  183 (280)
T PF13429_consen  105 ERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDAR  183 (280)
T ss_dssp             -------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHH
T ss_pred             ccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHH
Confidence               235667788889999999999999999976533 34567788888889999999999999999999985 5568889


Q ss_pred             HHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036263          201 NTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG  277 (305)
Q Consensus       201 ~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g  277 (305)
                      ..++..+...|+.+++.++++...+   .|...+..+..+|...|+.++|..+|++..+.. +.|......+..++...|
T Consensus       184 ~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g  262 (280)
T PF13429_consen  184 NALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAG  262 (280)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---
T ss_pred             HHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccc
Confidence            9999999999999998888877763   466778899999999999999999999988853 347788889999999999


Q ss_pred             cHHHHHHHHHHHH
Q 036263          278 LIEDGLQYFDIMK  290 (305)
Q Consensus       278 ~~~~a~~~~~~m~  290 (305)
                      +.++|..+.+...
T Consensus       263 ~~~~A~~~~~~~~  275 (280)
T PF13429_consen  263 RKDEALRLRRQAL  275 (280)
T ss_dssp             -------------
T ss_pred             ccccccccccccc
Confidence            9999999988765

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.44  E-value=3.6e-10  Score=102.92  Aligned_cols=156  Identities=11%  Similarity=-0.004  Sum_probs=97.8

Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHh
Q 036263          131 TALLNGFVKRDYFEEALEYFRVMQISGVEPD-YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR  209 (305)
Q Consensus       131 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  209 (305)
                      +.+...+...|++++|...+++..+.  .|+ ...|..+...+...|++++|...++...+.. +.+..+|..+...+..
T Consensus       335 ~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~  411 (615)
T TIGR00990       335 NLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFI  411 (615)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            33334444555666666666555442  343 4455555666666666666666666665553 3445666666667777


Q ss_pred             cCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 036263          210 FGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYF  286 (305)
Q Consensus       210 ~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~  286 (305)
                      .|++++|...|++..+  | +...+..+...+.+.|++++|...|++..+. .+-+...+..+...+...|++++|++.|
T Consensus       412 ~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~  490 (615)
T TIGR00990       412 KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKF  490 (615)
T ss_pred             cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHH
Confidence            7777777777776653  2 4455666667777777777777777776653 2234566667777777777777777777


Q ss_pred             HHHH
Q 036263          287 DIMK  290 (305)
Q Consensus       287 ~~m~  290 (305)
                      +...
T Consensus       491 ~~Al  494 (615)
T TIGR00990       491 DTAI  494 (615)
T ss_pred             HHHH
Confidence            7766

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.42  E-value=3.1e-10  Score=90.06  Aligned_cols=191  Identities=12%  Similarity=0.057  Sum_probs=158.8

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 036263           98 VMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVC  172 (305)
Q Consensus        98 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~  172 (305)
                      ...+..+...+.+.|++++|...+++...     ...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~  109 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL  109 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence            45567778889999999999999988744     4457788899999999999999999887753 33566778888889


Q ss_pred             cCcCChhHHHHHHHHHhhcCC-CCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHH
Q 036263          173 ANVRTLGIGLWMHRYVPKQDF-KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEAL  248 (305)
Q Consensus       173 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~  248 (305)
                      ...|++++|...++...+... +.....+..+...+...|++++|...+++..+   .+...+..+...+...|++++|.
T Consensus       110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  189 (234)
T TIGR02521       110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR  189 (234)
T ss_pred             HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999999987532 23456677788899999999999999998874   24567888899999999999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       249 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      ..+++.... .+.+...+..+...+...|+.+.|..+.+.+.
T Consensus       190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  230 (234)
T TIGR02521       190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ  230 (234)
T ss_pred             HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            999998876 34566777788888889999999999988876

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.41  E-value=5.7e-10  Score=108.30  Aligned_cols=244  Identities=13%  Similarity=0.036  Sum_probs=181.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HhhHHHHHHhhcCCCC---------------C-ChhHHHHHHHHHHh
Q 036263           48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPS-HITFVTLLSGCADFPS---------------N-NVMVSTALLDMYAK  110 (305)
Q Consensus        48 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~---------------~-~~~~~~~ll~~~~~  110 (305)
                      +..+...+...|++++|++.|++..+.  .|+ ...+..+-..+.+.++               | +...+..+...+.+
T Consensus       464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~  541 (1157)
T PRK11447        464 LAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSG  541 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            445566777888999999988888773  454 3444444455555555               2 33334444445566


Q ss_pred             cCChHHHHHHHHhcCcc---------------ccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCc
Q 036263          111 FGRMDLATVVFDVMRGC---------------DFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANV  175 (305)
Q Consensus       111 ~g~~~~a~~~~~~~~~~---------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~  175 (305)
                      .++.++|...++.++..               ..+..+...+...|+.++|.++++.     .+++...+..+...+.+.
T Consensus       542 ~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~  616 (1157)
T PRK11447        542 SDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQR  616 (1157)
T ss_pred             CCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHc
Confidence            78888888888776531               1122445677888999999888872     244566777888899999


Q ss_pred             CChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHH
Q 036263          176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFN  252 (305)
Q Consensus       176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~  252 (305)
                      |+.++|...++...+.. +.+...+..+...|...|++++|.+.++...+   .+...+..+..++...|++++|.++++
T Consensus       617 g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~  695 (1157)
T PRK11447        617 GDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFN  695 (1157)
T ss_pred             CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            99999999999999875 56788999999999999999999999998874   245667778888999999999999999


Q ss_pred             HHHHCCC--CC---CHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCc
Q 036263          253 LMQKGVF--KT---DEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQI  299 (305)
Q Consensus       253 ~m~~~g~--~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~  299 (305)
                      ++....-  .|   +...+..+...+...|++++|+..|+......|+.|+.
T Consensus       696 ~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~~  747 (1157)
T PRK11447        696 RLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPTR  747 (1157)
T ss_pred             HHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCC
Confidence            9887532  22   23456666788889999999999999987666776543

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.40  E-value=2.5e-11  Score=103.84  Aligned_cols=244  Identities=14%  Similarity=0.175  Sum_probs=174.2

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HhhHHHH-------------HHhhcCCCC---CChhHHHHHHHHH
Q 036263           46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPS-HITFVTL-------------LSGCADFPS---NNVMVSTALLDMY  108 (305)
Q Consensus        46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l-------------l~~~~~~~~---~~~~~~~~ll~~~  108 (305)
                      +.|..|-..+-.+|++..|+.-|++...  +.|+ ...|..+             +.+|.++-.   ....++..+...|
T Consensus       219 iawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iY  296 (966)
T KOG4626|consen  219 IAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIY  296 (966)
T ss_pred             eeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEE
Confidence            4577777777777888888877777765  3443 1112111             111111111   2334455555666


Q ss_pred             HhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCChhHHH
Q 036263          109 AKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD-YLTIISVLNVCANVRTLGIGL  182 (305)
Q Consensus       109 ~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~  182 (305)
                      -..|.+|.|+..+++..+     ...|+.|..++-..|++.+|.+.++.....  .|+ ....+.|-..+...|.+++|.
T Consensus       297 yeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~  374 (966)
T KOG4626|consen  297 YEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEAT  374 (966)
T ss_pred             eccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHH
Confidence            677788888888877755     556888888888888888888888876653  443 566778888888888888888


Q ss_pred             HHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--Cc-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 036263          183 WMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RT-LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF  259 (305)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  259 (305)
                      .+|....+-. +--...++.|...|-+.|++++|...|++...  |+ ...|+.+...|-..|+.+.|.+.+.+...  +
T Consensus       375 ~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~  451 (966)
T KOG4626|consen  375 RLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--I  451 (966)
T ss_pred             HHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--c
Confidence            8888776643 33366778888888888888888888888763  43 35788888888888899999888888877  4


Q ss_pred             CCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCc
Q 036263          260 KTDE-VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQI  299 (305)
Q Consensus       260 ~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~  299 (305)
                      .|.- ..++.|...|-..|.+.+|+.-+++..   .++||.
T Consensus       452 nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL---klkPDf  489 (966)
T KOG4626|consen  452 NPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL---KLKPDF  489 (966)
T ss_pred             CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH---ccCCCC
Confidence            4543 677888888888999999999888877   777775

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.38  E-value=2.7e-10  Score=90.26  Aligned_cols=214  Identities=13%  Similarity=0.056  Sum_probs=171.9

Q ss_pred             hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc---------c
Q 036263           57 RSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG---------C  127 (305)
Q Consensus        57 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---------~  127 (305)
                      -..+.++|+++|-+|.+    -|..||               .+--+|.+.|.+.|..|.|+++.+.+.+         .
T Consensus        47 Ls~Q~dKAvdlF~e~l~----~d~~t~---------------e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~  107 (389)
T COG2956          47 LSNQPDKAVDLFLEMLQ----EDPETF---------------EAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRL  107 (389)
T ss_pred             hhcCcchHHHHHHHHHh----cCchhh---------------HHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHH
Confidence            35689999999999976    344444               2345677889999999999999998865         2


Q ss_pred             ccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC----hhHHHHH
Q 036263          128 DFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN----VRVCNTL  203 (305)
Q Consensus       128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l  203 (305)
                      ...-.|..-|...|-+|.|+++|..+.+.| +.-.....-|+..|-...+|++|.++-+++.+.+-.+.    ...|.-+
T Consensus       108 lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCEL  186 (389)
T COG2956         108 LALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCEL  186 (389)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHH
Confidence            224457778889999999999999998754 33456788899999999999999999999988764443    3456777


Q ss_pred             HHHHHhcCChHHHHHHHHhcccC---chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 036263          204 MDVYSRFGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIE  280 (305)
Q Consensus       204 i~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  280 (305)
                      ...+....+.+.|..++++..+.   .+..--.+.+.+...|++++|.+.++...+.+...-..+...|..+|...|+.+
T Consensus       187 Aq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~  266 (389)
T COG2956         187 AQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPA  266 (389)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH
Confidence            77777888999999999998753   334444556778999999999999999999875556678889999999999999


Q ss_pred             HHHHHHHHHH
Q 036263          281 DGLQYFDIMK  290 (305)
Q Consensus       281 ~a~~~~~~m~  290 (305)
                      +....+..+.
T Consensus       267 ~~~~fL~~~~  276 (389)
T COG2956         267 EGLNFLRRAM  276 (389)
T ss_pred             HHHHHHHHHH
Confidence            9999999887

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.37  E-value=1.6e-09  Score=101.87  Aligned_cols=221  Identities=8%  Similarity=-0.053  Sum_probs=169.3

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDV  123 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~  123 (305)
                      +...|..+-.++.. +++++|+..|.+....  .|+....                  ..+...+.+.|++++|...|++
T Consensus       476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~------------------L~lA~al~~~Gr~eeAi~~~rk  534 (987)
T PRK09782        476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQH------------------RAVAYQAYQVEDYATALAAWQK  534 (987)
T ss_pred             CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHH------------------HHHHHHHHHCCCHHHHHHHHHH
Confidence            56667777766666 8899999988887764  4654321                  2233345678999999999987


Q ss_pred             cCc----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChh
Q 036263          124 MRG----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD-YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR  198 (305)
Q Consensus       124 ~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  198 (305)
                      +..    ...+..+...+.+.|+.++|.+.+++..+..  |+ ...+..+.......|++++|...+++..+..  |+..
T Consensus       535 a~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~  610 (987)
T PRK09782        535 ISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSAN  610 (987)
T ss_pred             HhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHH
Confidence            754    2345666777888999999999999887753  43 3333344445556799999999999998764  5688


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036263          199 VCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH  275 (305)
Q Consensus       199 ~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~  275 (305)
                      .|..+..++.+.|+.++|...+++...  | +...++.+..++...|++++|...+++..+.. +-+...+..+..++..
T Consensus       611 a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~  689 (987)
T PRK09782        611 AYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQR  689 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            888999999999999999999998874  3 56778888888999999999999999988843 2356778888889999


Q ss_pred             cCcHHHHHHHHHHHH
Q 036263          276 AGLIEDGLQYFDIMK  290 (305)
Q Consensus       276 ~g~~~~a~~~~~~m~  290 (305)
                      .|++++|+..++...
T Consensus       690 lGd~~eA~~~l~~Al  704 (987)
T PRK09782        690 LDDMAATQHYARLVI  704 (987)
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999999999887

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.36  E-value=1.8e-10  Score=99.29  Aligned_cols=244  Identities=14%  Similarity=0.031  Sum_probs=194.6

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHhhHHHHHHhhc-------------CCCCCChhHHHHHHHHHHh
Q 036263           46 VQWTSSISRHCRSGCILEAALEFTRMRLYG--TNPSHITFVTLLSGCA-------------DFPSNNVMVSTALLDMYAK  110 (305)
Q Consensus        46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~-------------~~~~~~~~~~~~ll~~~~~  110 (305)
                      .....+-.+|-..+++++|.++|+..++..  ..-+..+|.+.+--+.             ....-.+.+|.++.++|.-
T Consensus       354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL  433 (638)
T KOG1126|consen  354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSL  433 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh
Confidence            445566788999999999999999998752  2225566666553332             2222677899999999999


Q ss_pred             cCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHH---HHHHhcCcCChhHHH
Q 036263          111 FGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIIS---VLNVCANVRTLGIGL  182 (305)
Q Consensus       111 ~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~---ll~~~~~~~~~~~a~  182 (305)
                      .++.+.|++.|++...     ..+|+.+..-+.....+|.|...|+...    ..|...|++   +...|.+.++++.|+
T Consensus       434 Qkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rhYnAwYGlG~vy~Kqek~e~Ae  509 (638)
T KOG1126|consen  434 QKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVDPRHYNAWYGLGTVYLKQEKLEFAE  509 (638)
T ss_pred             hhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCCchhhHHHHhhhhheeccchhhHHH
Confidence            9999999999999966     5568888888888899999999998754    445555555   566799999999999


Q ss_pred             HHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 036263          183 WMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF  259 (305)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  259 (305)
                      -.|+...+-+ +-+.+....+...+-+.|+.++|.+++++...   .|+..--.....+...+++++|+..++++++  +
T Consensus       510 ~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~--~  586 (638)
T KOG1126|consen  510 FHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKE--L  586 (638)
T ss_pred             HHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH--h
Confidence            9999999876 66788888899999999999999999999873   3555555566778889999999999999999  4


Q ss_pred             CCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCc
Q 036263          260 KTDE-VSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQI  299 (305)
Q Consensus       260 ~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~  299 (305)
                      .|+. ..|..+.+.|-+.|+.+.|+.-|.-+.   .+.|..
T Consensus       587 vP~es~v~~llgki~k~~~~~~~Al~~f~~A~---~ldpkg  624 (638)
T KOG1126|consen  587 VPQESSVFALLGKIYKRLGNTDLALLHFSWAL---DLDPKG  624 (638)
T ss_pred             CcchHHHHHHHHHHHHHHccchHHHHhhHHHh---cCCCcc
Confidence            5655 667788889999999999999988877   455543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.33  E-value=1.2e-09  Score=94.00  Aligned_cols=234  Identities=12%  Similarity=0.008  Sum_probs=149.0

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHH--HhhcCCCC----------------CChhHHHHHHHHHH
Q 036263           48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLL--SGCADFPS----------------NNVMVSTALLDMYA  109 (305)
Q Consensus        48 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll--~~~~~~~~----------------~~~~~~~~ll~~~~  109 (305)
                      |-....+..+.|+++.|.+.|.++.+  ..|+......+.  ..+...++                .+......+...|.
T Consensus       121 ~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~  198 (398)
T PRK10747        121 YLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYI  198 (398)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            33334455788999999999998876  456654333222  22222222                23344555555556


Q ss_pred             hcCChHHHHHHHHhcCcc-------------ccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcC
Q 036263          110 KFGRMDLATVVFDVMRGC-------------DFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVR  176 (305)
Q Consensus       110 ~~g~~~~a~~~~~~~~~~-------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~  176 (305)
                      +.|++++|.++++.+.+.             ..|..++.......+.+...++|+.+.+. .+.+......+..++...|
T Consensus       199 ~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g  277 (398)
T PRK10747        199 RTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECD  277 (398)
T ss_pred             HHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCC
Confidence            666666666555555431             12222233333333344444444444222 2334556666677777888


Q ss_pred             ChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHH
Q 036263          177 TLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNL  253 (305)
Q Consensus       177 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~  253 (305)
                      +.++|..++++..+.  +++..  -.++.+....++.+++.+..++..+  | |...+..+...|.+.+++++|.+.|+.
T Consensus       278 ~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~  353 (398)
T PRK10747        278 DHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRA  353 (398)
T ss_pred             CHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            888888888777763  44442  1233444455788888888877764  3 556677888999999999999999999


Q ss_pred             HHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          254 MQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       254 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      ..+  ..|+..++..+...+.+.|+.++|.+++++-.
T Consensus       354 al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l  388 (398)
T PRK10747        354 ALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGL  388 (398)
T ss_pred             HHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            988  46999998899999999999999999998765

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.30  E-value=2.5e-09  Score=84.88  Aligned_cols=194  Identities=15%  Similarity=0.055  Sum_probs=157.4

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDV  123 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~  123 (305)
                      ....+..+...+...|++++|.+.+++..+.  .|+.                 ...+..+...+...|++++|.+.+++
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~-----------------~~~~~~la~~~~~~~~~~~A~~~~~~   90 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDD-----------------YLAYLALALYYQQLGELEKAEDSFRR   90 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccc-----------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4567888889999999999999999998764  3432                 23345566778899999999999988


Q ss_pred             cCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCCh
Q 036263          124 MRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNV  197 (305)
Q Consensus       124 ~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  197 (305)
                      ...     ...+..+...+...|++++|.+.+++.......| ....+..+...+...|++++|...+++..+.. +.+.
T Consensus        91 al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~  169 (234)
T TIGR02521        91 ALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRP  169 (234)
T ss_pred             HHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCh
Confidence            754     3457788889999999999999999987643223 34567777888999999999999999998865 4457


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263          198 RVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG  257 (305)
Q Consensus       198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  257 (305)
                      ..+..+...+...|++++|...+++..+   .+...+..+...+...|+.++|..+.+.+...
T Consensus       170 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       170 ESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            7888999999999999999999998763   35566777888899999999999998887653

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.27  E-value=8.5e-09  Score=100.28  Aligned_cols=242  Identities=11%  Similarity=-0.022  Sum_probs=166.6

Q ss_pred             CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HhhHHHHHHhhcCCCC------------------------CC
Q 036263           43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPS-HITFVTLLSGCADFPS------------------------NN   97 (305)
Q Consensus        43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~------------------------~~   97 (305)
                      .+...+..+-..+...|++++|++.|++..+.  .|+ ...+..+...+.....                        ..
T Consensus       383 ~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~  460 (1157)
T PRK11447        383 TDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQ  460 (1157)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence            35667778889999999999999999999874  444 3344333333321110                        00


Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 036263           98 VMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNV  171 (305)
Q Consensus        98 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~  171 (305)
                      ...+..+...+...|++++|...|++...     ...+..+...+.+.|++++|...+++..+.  .| +...+..+...
T Consensus       461 ~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~  538 (1157)
T PRK11447        461 NDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLY  538 (1157)
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHH
Confidence            12234456667788999999999988754     345677888889999999999999887653  33 22222222222


Q ss_pred             hcCcCChhHHHHHHHHHhhc---------------------------------------CCCCChhHHHHHHHHHHhcCC
Q 036263          172 CANVRTLGIGLWMHRYVPKQ---------------------------------------DFKDNVRVCNTLMDVYSRFGC  212 (305)
Q Consensus       172 ~~~~~~~~~a~~~~~~~~~~---------------------------------------~~~~~~~~~~~li~~~~~~g~  212 (305)
                      +...++.++|...++.+...                                       ..+.+...+..+...+.+.|+
T Consensus       539 l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~  618 (1157)
T PRK11447        539 LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGD  618 (1157)
T ss_pred             HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence            33344444444433322110                                       124456667778888899999


Q ss_pred             hHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHH
Q 036263          213 IEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT-DEVSFTGALTACSHAGLIEDGLQYFDI  288 (305)
Q Consensus       213 ~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~  288 (305)
                      +++|...|++..+  | +...+..+...|...|++++|.+.++...+.  .| +..++..+..++...|++++|.++++.
T Consensus       619 ~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~  696 (1157)
T PRK11447        619 YAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNR  696 (1157)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            9999999998874  3 5678888999999999999999999987764  34 445666777888889999999999998


Q ss_pred             HH
Q 036263          289 MK  290 (305)
Q Consensus       289 m~  290 (305)
                      +.
T Consensus       697 al  698 (1157)
T PRK11447        697 LI  698 (1157)
T ss_pred             Hh
Confidence            87

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.26  E-value=5.6e-09  Score=90.43  Aligned_cols=230  Identities=13%  Similarity=0.131  Sum_probs=173.5

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036263           47 QWTSSISRHCRSGCILEAALEFTRMRLY---GTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDV  123 (305)
Q Consensus        47 ~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~  123 (305)
                      +...+...|...|+++.|..++.+..+.   +..-+...+.+++              +.+...|...+++++|..+|+.
T Consensus       201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l--------------~~~a~~y~~~~k~~eAv~ly~~  266 (508)
T KOG1840|consen  201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASML--------------NILALVYRSLGKYDEAVNLYEE  266 (508)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHH--------------HHHHHHHHHhccHHHHHHHHHH
Confidence            3444889999999999999999987764   1111222222222              3466778899999999999998


Q ss_pred             cCc-------------cccHHHHHHHHHcCCChHHHHHHHHHHHH---c--CC-CCCH-HHHHHHHHHhcCcCChhHHHH
Q 036263          124 MRG-------------CDFWTALLNGFVKRDYFEEALEYFRVMQI---S--GV-EPDY-LTIISVLNVCANVRTLGIGLW  183 (305)
Q Consensus       124 ~~~-------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~--g~-~p~~-~t~~~ll~~~~~~~~~~~a~~  183 (305)
                      +..             ..+++.|...|.+.|++++|..++++..+   .  |. .|.. .-++.+...|...+++++|..
T Consensus       267 AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~  346 (508)
T KOG1840|consen  267 ALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKK  346 (508)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHH
Confidence            855             45688899999999999999888876532   1  22 2333 346677788899999999999


Q ss_pred             HHHHHhhc---CCC----CChhHHHHHHHHHHhcCChHHHHHHHHhcccC-----------chhhHHHHHHHHHhcCChH
Q 036263          184 MHRYVPKQ---DFK----DNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR-----------TLVSWNSIIVGFAVNGFVG  245 (305)
Q Consensus       184 ~~~~~~~~---~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~  245 (305)
                      +++...+.   -+.    .-..+++.+...|.+.|++++|++++++....           ....++.+...|.+.+++.
T Consensus       347 l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~  426 (508)
T KOG1840|consen  347 LLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYE  426 (508)
T ss_pred             HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccc
Confidence            98876542   111    22578999999999999999999999988631           2346788889999999999


Q ss_pred             HHHHHHHH----HHHCC-CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          246 EALEYFNL----MQKGV-FKTD-EVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       246 ~a~~~~~~----m~~~g-~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      +|.++|.+    |+..| -.|+ ..+|..|...|...|+++.|.++.+...
T Consensus       427 ~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  427 EAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             hHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            99999887    43334 1223 3688999999999999999999998876

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.25  E-value=7.1e-09  Score=97.53  Aligned_cols=223  Identities=10%  Similarity=-0.065  Sum_probs=169.8

Q ss_pred             CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 036263           43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFD  122 (305)
Q Consensus        43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~  122 (305)
                      |+......+...+...|++++|...|+++...  .|+...+                  ..+..++.+.|+.++|...++
T Consensus       507 Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~------------------~~la~all~~Gd~~eA~~~l~  566 (987)
T PRK09782        507 PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDL------------------LAAANTAQAAGNGAARDRWLQ  566 (987)
T ss_pred             CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHH------------------HHHHHHHHHCCCHHHHHHHHH
Confidence            44333333344556899999999999987653  3433222                  233455788999999999998


Q ss_pred             hcCcc--ccHH---HHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCCh
Q 036263          123 VMRGC--DFWT---ALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNV  197 (305)
Q Consensus       123 ~~~~~--~~~~---~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  197 (305)
                      +....  ...+   .+.....+.|++++|...+++..+.  .|+...+..+..++.+.|+.++|...+++..+.. +.+.
T Consensus       567 qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~  643 (987)
T PRK09782        567 QAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNS  643 (987)
T ss_pred             HHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence            88652  2222   2333444569999999999998764  6788889999999999999999999999999986 6678


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 036263          198 RVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE-VSFTGALTAC  273 (305)
Q Consensus       198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~  273 (305)
                      ..++.+..++...|+.++|...+++..+  | +...+..+..++...|++++|...+++..+.  .|+. .+........
T Consensus       644 ~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~  721 (987)
T PRK09782        644 NYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQN  721 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHH
Confidence            8889999999999999999999999874  4 6678999999999999999999999999884  4654 4444555555


Q ss_pred             hccCcHHHHHHHHHHHH
Q 036263          274 SHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       274 ~~~g~~~~a~~~~~~m~  290 (305)
                      .+..+++.+.+-++..-
T Consensus       722 ~~~~~~~~a~~~~~r~~  738 (987)
T PRK09782        722 QQRFNFRRLHEEVGRRW  738 (987)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            66666777766665443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.25  E-value=5.4e-11  Score=97.62  Aligned_cols=189  Identities=16%  Similarity=0.132  Sum_probs=108.8

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDV  123 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~  123 (305)
                      +...+..++.. ...+++++|.++++...+..  ++...+                  ..++..+.+.++++.+..+++.
T Consensus        77 ~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l------------------~~~l~~~~~~~~~~~~~~~l~~  135 (280)
T PF13429_consen   77 NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYL------------------LSALQLYYRLGDYDEAEELLEK  135 (280)
T ss_dssp             --------------------------------------------------------------H-HHHTT-HHHHHHHHHH
T ss_pred             ccccccccccc-cccccccccccccccccccc--cccchh------------------hHHHHHHHHHhHHHHHHHHHHH
Confidence            55567777777 78899999999988765532  333333                  4455567888999999999988


Q ss_pred             cCc-------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCC
Q 036263          124 MRG-------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD  195 (305)
Q Consensus       124 ~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  195 (305)
                      +..       ...|..+...+.+.|+.++|++.+++..+.  .| |......++..+...|+.+++.++++...+.. +.
T Consensus       136 ~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~  212 (280)
T PF13429_consen  136 LEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PD  212 (280)
T ss_dssp             HHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HT
T ss_pred             HHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cC
Confidence            643       345778888999999999999999998875  66 47778899999999999999999999988875 66


Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263          196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQK  256 (305)
Q Consensus       196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  256 (305)
                      |...+..+..+|...|+.++|...|++..+  | |......+..++...|+.++|..+.++...
T Consensus       213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  213 DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred             HHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            778889999999999999999999999874  4 778888899999999999999999887543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.25  E-value=7e-09  Score=89.29  Aligned_cols=198  Identities=10%  Similarity=-0.075  Sum_probs=145.8

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHhhcCCCC----------------CCh--------hHHHHHHH
Q 036263           52 ISRHCRSGCILEAALEFTRMRLYGTNP-SHITFVTLLSGCADFPS----------------NNV--------MVSTALLD  106 (305)
Q Consensus        52 i~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~----------------~~~--------~~~~~ll~  106 (305)
                      ...+...|+++.|.+.+++..+.  .| +......+...+.+.++                .+.        ..|..++.
T Consensus       160 a~l~l~~g~~~~Al~~l~~~~~~--~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~  237 (398)
T PRK10747        160 VRIQLARNENHAARHGVDKLLEV--APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMD  237 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            45666677777777777777664  34 34444445555555554                111        13333444


Q ss_pred             HHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHH
Q 036263          107 MYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG  181 (305)
Q Consensus       107 ~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a  181 (305)
                      ...+..+.+...++++.++.     ......+...+...|+.++|.+++++..+.  .|+...  .++.+....++.+++
T Consensus       238 ~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~a  313 (398)
T PRK10747        238 QAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQL  313 (398)
T ss_pred             HHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHH
Confidence            44455566777777777755     456788899999999999999999988773  455422  234444566999999


Q ss_pred             HHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc--cCchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263          182 LWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH--KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK  256 (305)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  256 (305)
                      .+..+...+.. +-|...+..+...+.+.+++++|.+.|+...  .|+...|..+...+...|+.++|.+++++-..
T Consensus       314 l~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        314 EKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             HHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            99999998875 6677788999999999999999999999997  48888999999999999999999999998644

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.25  E-value=2.9e-08  Score=92.54  Aligned_cols=151  Identities=7%  Similarity=-0.069  Sum_probs=73.5

Q ss_pred             HcCCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCC---ChhHHHHHHHHHHhcCCh
Q 036263          138 VKRDYFEEALEYFRVMQISGVE-PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD---NVRVCNTLMDVYSRFGCI  213 (305)
Q Consensus       138 ~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~  213 (305)
                      ...|++++|...|+.+.+.+-. |+. .-..+..++...|++++|...++.+.+..-..   .......+..++.+.|++
T Consensus       248 l~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~  326 (765)
T PRK10049        248 LARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY  326 (765)
T ss_pred             HHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence            3445556666666665554321 221 11113445555666666666666554432100   022334444455566666


Q ss_pred             HHHHHHHHhcccCc------------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036263          214 EFARQVFQRMHKRT------------------LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH  275 (305)
Q Consensus       214 ~~a~~~~~~~~~~~------------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~  275 (305)
                      ++|.++++++...+                  ...+..+...+...|++++|.++++++... .+-+...+..+...+..
T Consensus       327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~  405 (765)
T PRK10049        327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQA  405 (765)
T ss_pred             HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHh
Confidence            66666655554210                  112334444555556666666666555543 12234445555555555


Q ss_pred             cCcHHHHHHHHHHHH
Q 036263          276 AGLIEDGLQYFDIMK  290 (305)
Q Consensus       276 ~g~~~~a~~~~~~m~  290 (305)
                      .|++++|++.++...
T Consensus       406 ~g~~~~A~~~l~~al  420 (765)
T PRK10049        406 RGWPRAAENELKKAE  420 (765)
T ss_pred             cCCHHHHHHHHHHHH
Confidence            566666666555554

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=1.1e-08  Score=85.08  Aligned_cols=234  Identities=12%  Similarity=0.093  Sum_probs=181.3

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCC--CCCCHhhHHHHHHhhcCCCC-------------CChhHHHHHHHHHHhcCChHHH
Q 036263           53 SRHCRSGCILEAALEFTRMRLYG--TNPSHITFVTLLSGCADFPS-------------NNVMVSTALLDMYAKFGRMDLA  117 (305)
Q Consensus        53 ~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~-------------~~~~~~~~ll~~~~~~g~~~~a  117 (305)
                      .+.-...++++|+.+|+++++..  .--|..+|..++-.-.....             -.+.|...+.+-|+-.++.+.|
T Consensus       270 ~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKA  349 (559)
T KOG1155|consen  270 AASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKA  349 (559)
T ss_pred             HHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHH
Confidence            34456789999999999999872  11267788777655333222             4456677777888888999999


Q ss_pred             HHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhc
Q 036263          118 TVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQ  191 (305)
Q Consensus       118 ~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~  191 (305)
                      ...|++...     ...|+.+.+-|....+...|.+-++...+  +.| |-..|-.|-++|.-.+...-|.-.|++..+.
T Consensus       350 v~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~  427 (559)
T KOG1155|consen  350 VMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL  427 (559)
T ss_pred             HHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc
Confidence            999999865     66799999999999999999999998876  444 8889999999999999999999999999887


Q ss_pred             CCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCC--
Q 036263          192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQK----GVFKTD--  262 (305)
Q Consensus       192 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~--  262 (305)
                      . +.|...|.+|.++|.+.++.++|.+.|.+...   -+...+..+.+.|-+.++..+|...|++-.+    .|..-+  
T Consensus       428 k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t  506 (559)
T KOG1155|consen  428 K-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDET  506 (559)
T ss_pred             C-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHH
Confidence            6 77899999999999999999999999999874   3447889999999999999999988877544    343222  


Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHH
Q 036263          263 EVSFTGALTACSHAGLIEDGLQYFDIM  289 (305)
Q Consensus       263 ~~~~~~li~~~~~~g~~~~a~~~~~~m  289 (305)
                      ......|..-+.+.+++++|..+....
T Consensus       507 ~ka~~fLA~~f~k~~~~~~As~Ya~~~  533 (559)
T KOG1155|consen  507 IKARLFLAEYFKKMKDFDEASYYATLV  533 (559)
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence            122223445566777777766644433

>PRK12370 invasion protein regulator; Provisional

Probab=99.17  E-value=3.4e-08  Score=88.68  Aligned_cols=231  Identities=10%  Similarity=-0.054  Sum_probs=147.0

Q ss_pred             CchHhHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCCHhh-HHHHHHhhcCCCCCChhHHHHHHH--HHHhcCCh
Q 036263           43 DTTVQWTSSISRHCR-----SGCILEAALEFTRMRLYGTNPSHIT-FVTLLSGCADFPSNNVMVSTALLD--MYAKFGRM  114 (305)
Q Consensus        43 ~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~~~~~~ll~--~~~~~g~~  114 (305)
                      .+...|...+.+...     .+..++|.+.|++..+  ..|+... |..+-.++           ..+..  .+...+++
T Consensus       254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~--ldP~~a~a~~~La~~~-----------~~~~~~g~~~~~~~~  320 (553)
T PRK12370        254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVN--MSPNSIAPYCALAECY-----------LSMAQMGIFDKQNAM  320 (553)
T ss_pred             CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHh--cCCccHHHHHHHHHHH-----------HHHHHcCCcccchHH
Confidence            456667777776432     2346789999998886  4665432 22211111           00000  01133457


Q ss_pred             HHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHH
Q 036263          115 DLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYV  188 (305)
Q Consensus       115 ~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~  188 (305)
                      ++|...+++...     ...+..+...+...|++++|...|++..+.  .| +...+..+...+...|++++|...+++.
T Consensus       321 ~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A  398 (553)
T PRK12370        321 IKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINEC  398 (553)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            788888877754     445667777778888888888888887764  45 3556777777888888888888888888


Q ss_pred             hhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 036263          189 PKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV  264 (305)
Q Consensus       189 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~  264 (305)
                      .+.+ +.+...+..++..+...|++++|...+++..+   | +...+..+..++...|++++|...++++...  .|+..
T Consensus       399 l~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~  475 (553)
T PRK12370        399 LKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGL  475 (553)
T ss_pred             HhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhH
Confidence            8765 22333334444456667888888888887752   3 3445666777788888888888888886653  34433


Q ss_pred             -HHHHHHHHHhccCcHHHHHHHHHHHHHHh
Q 036263          265 -SFTGALTACSHAGLIEDGLQYFDIMKKIY  293 (305)
Q Consensus       265 -~~~~li~~~~~~g~~~~a~~~~~~m~~~~  293 (305)
                       ..+.+...+...|  +.+...++.+.+..
T Consensus       476 ~~~~~l~~~~~~~g--~~a~~~l~~ll~~~  503 (553)
T PRK12370        476 IAVNLLYAEYCQNS--ERALPTIREFLESE  503 (553)
T ss_pred             HHHHHHHHHHhccH--HHHHHHHHHHHHHh
Confidence             3344444556666  46777676666433

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.17  E-value=9.9e-08  Score=78.04  Aligned_cols=234  Identities=10%  Similarity=0.064  Sum_probs=140.7

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDV  123 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~  123 (305)
                      .+..|-.-.++--+.|+.+.+-..+.+..+.--.++...                  .-+........|+.+.|..-.++
T Consensus       117 p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v------------------~ltrarlll~~~d~~aA~~~v~~  178 (400)
T COG3071         117 PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAV------------------ELTRARLLLNRRDYPAARENVDQ  178 (400)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHH------------------HHHHHHHHHhCCCchhHHHHHHH
Confidence            344455555566666666666666666655311222222                  33333444455555555554444


Q ss_pred             cCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHhcCcCChhHHHHHHHHHhhc
Q 036263          124 MRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD-------YLTIISVLNVCANVRTLGIGLWMHRYVPKQ  191 (305)
Q Consensus       124 ~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~  191 (305)
                      +..     ..+......+|.+.|++.....++..|.+.|+--+       ..+|..+++-....+..+.-...|+.....
T Consensus       179 ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~  258 (400)
T COG3071         179 LLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK  258 (400)
T ss_pred             HHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH
Confidence            432     33455555555666666666666665555554333       234555555544444444444444443322


Q ss_pred             CCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc----------------------------------cCchhhHHHHHHH
Q 036263          192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH----------------------------------KRTLVSWNSIIVG  237 (305)
Q Consensus       192 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----------------------------------~~~~~~~~~li~~  237 (305)
                       ...++..-.+++.-+.++|+.++|.++..+..                                  ..+...+.+|...
T Consensus       259 -lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L  337 (400)
T COG3071         259 -LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRL  337 (400)
T ss_pred             -hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence             23334444444555555555555555444332                                  1245678899999


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCc
Q 036263          238 FAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQI  299 (305)
Q Consensus       238 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~  299 (305)
                      |.+++.|.+|.+.|+...+  ..|+..+|+.+..++.+.|+..+|.++.++-. ..-.+|+.
T Consensus       338 ~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L-~~~~~~~~  396 (400)
T COG3071         338 ALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL-LLTRQPNL  396 (400)
T ss_pred             HHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH-HHhcCCCC
Confidence            9999999999999998777  57999999999999999999999999999887 55555543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.16  E-value=1.1e-07  Score=88.75  Aligned_cols=243  Identities=8%  Similarity=-0.050  Sum_probs=155.7

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HhhHHHHHHhhcCCCC---------------C-ChhHHHHHHH
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPS-HITFVTLLSGCADFPS---------------N-NVMVSTALLD  106 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~---------------~-~~~~~~~ll~  106 (305)
                      +...+..+...+.+.|++++|.++|++..+.  .|+ ...+..+...+...++               | +.. +..+..
T Consensus        48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~  124 (765)
T PRK10049         48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAY  124 (765)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHH
Confidence            4445777777888888888888888887663  343 4444445455555555               3 334 667777


Q ss_pred             HHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHH------------------------------------
Q 036263          107 MYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEE------------------------------------  145 (305)
Q Consensus       107 ~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~------------------------------------  145 (305)
                      ++...|+.++|+..++++..     ...+..+...+...|..+.                                    
T Consensus       125 ~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~  204 (765)
T PRK10049        125 VYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRS  204 (765)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccC
Confidence            77788888888888877744     2233344445544455444                                    


Q ss_pred             ----------HHHHHHHHHHc-CCCCCHH-HHH----HHHHHhcCcCChhHHHHHHHHHhhcCCC-CChhHHHHHHHHHH
Q 036263          146 ----------ALEYFRVMQIS-GVEPDYL-TII----SVLNVCANVRTLGIGLWMHRYVPKQDFK-DNVRVCNTLMDVYS  208 (305)
Q Consensus       146 ----------a~~~~~~m~~~-g~~p~~~-t~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~  208 (305)
                                |++.++.+.+. ...|+.. .+.    ..+.++...|+.++|...|+.+.+.+.+ |+. ....+..+|.
T Consensus       205 ~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl  283 (765)
T PRK10049        205 EKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYL  283 (765)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHH
Confidence                      44444444332 1223221 111    1133455678899999999998887632 221 2222567889


Q ss_pred             hcCChHHHHHHHHhcccCc-------hhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-----------CCCCH---HHHH
Q 036263          209 RFGCIEFARQVFQRMHKRT-------LVSWNSIIVGFAVNGFVGEALEYFNLMQKGV-----------FKTDE---VSFT  267 (305)
Q Consensus       209 ~~g~~~~a~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----------~~p~~---~~~~  267 (305)
                      ..|++++|...|+++.+.+       ......+..++...|++++|.++++.+.+..           -.|+.   ..+.
T Consensus       284 ~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~  363 (765)
T PRK10049        284 KLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQS  363 (765)
T ss_pred             hcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHH
Confidence            9999999999999876421       2345666778889999999999999988752           11232   2445


Q ss_pred             HHHHHHhccCcHHHHHHHHHHHH
Q 036263          268 GALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       268 ~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      .+...+...|++++|+++++++.
T Consensus       364 ~~a~~l~~~g~~~eA~~~l~~al  386 (765)
T PRK10049        364 LLSQVAKYSNDLPQAEMRARELA  386 (765)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHH
Confidence            66677888899999999999887

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.12  E-value=2.1e-07  Score=86.15  Aligned_cols=155  Identities=8%  Similarity=-0.011  Sum_probs=94.1

Q ss_pred             HHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcC-----CCCChhHHHHHHHHHHh
Q 036263          135 NGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD-----FKDNVRVCNTLMDVYSR  209 (305)
Q Consensus       135 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~  209 (305)
                      .++...|+..++.+.|+.|...|.+....+-..+.++|...+++++|..+++.+....     .+++......|..+|..
T Consensus       300 ~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld  379 (822)
T PRK14574        300 GALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE  379 (822)
T ss_pred             HHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh
Confidence            3455556666666777766666655445566666777777777777777777665432     12233334566667777


Q ss_pred             cCChHHHHHHHHhccc--C---------------c-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036263          210 FGCIEFARQVFQRMHK--R---------------T-LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT  271 (305)
Q Consensus       210 ~g~~~~a~~~~~~~~~--~---------------~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~  271 (305)
                      .+++++|..+++++.+  |               | ...+..++..+...|+.++|.+.++++... -+-|......+..
T Consensus       380 ~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~  458 (822)
T PRK14574        380 SEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALAS  458 (822)
T ss_pred             cccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence            7777777777776653  1               0 012334455566667777777777776554 2335566666666


Q ss_pred             HHhccCcHHHHHHHHHHHH
Q 036263          272 ACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       272 ~~~~~g~~~~a~~~~~~m~  290 (305)
                      .+...|.+.+|++.++...
T Consensus       459 v~~~Rg~p~~A~~~~k~a~  477 (822)
T PRK14574        459 IYLARDLPRKAEQELKAVE  477 (822)
T ss_pred             HHHhcCCHHHHHHHHHHHh
Confidence            6666677777776665554

>TIGR00540 hemY_coli hemY protein

Probab=99.11  E-value=3.5e-08  Score=85.34  Aligned_cols=237  Identities=10%  Similarity=-0.062  Sum_probs=128.2

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh--HHHHHHhhcCCCC----------------CChhHHHHHHHHHHhc
Q 036263           50 SSISRHCRSGCILEAALEFTRMRLYGTNPSHIT--FVTLLSGCADFPS----------------NNVMVSTALLDMYAKF  111 (305)
Q Consensus        50 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~----------------~~~~~~~~ll~~~~~~  111 (305)
                      ....+..+.|+++.|.+.|.+..+.  .|+...  ...........++                .+..+...+...+.+.
T Consensus       123 laA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~  200 (409)
T TIGR00540       123 KAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRS  200 (409)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            3445666778888888888887653  344321  1111222222222                2334455555555666


Q ss_pred             CChHHHHHHHHhcCccc-----cHH----HHHHHHHcCCChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhcCcCChh
Q 036263          112 GRMDLATVVFDVMRGCD-----FWT----ALLNGFVKRDYFEEALEYFRVMQISGV---EPDYLTIISVLNVCANVRTLG  179 (305)
Q Consensus       112 g~~~~a~~~~~~~~~~~-----~~~----~li~~~~~~g~~~~a~~~~~~m~~~g~---~p~~~t~~~ll~~~~~~~~~~  179 (305)
                      |++++|.+.++.+.+..     .+.    .........+..+++.+.+..+.+...   +.+...+..+...+...|+.+
T Consensus       201 ~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~  280 (409)
T TIGR00540       201 GAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHD  280 (409)
T ss_pred             hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChH
Confidence            66666665555554311     111    001111111222222223333332210   124555666666667777777


Q ss_pred             HHHHHHHHHhhcCCCCChhH---HHHHHHHHHhcCChHHHHHHHHhccc--C-ch--hhHHHHHHHHHhcCChHHHHHHH
Q 036263          180 IGLWMHRYVPKQDFKDNVRV---CNTLMDVYSRFGCIEFARQVFQRMHK--R-TL--VSWNSIIVGFAVNGFVGEALEYF  251 (305)
Q Consensus       180 ~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~--~~~~~li~~~~~~g~~~~a~~~~  251 (305)
                      +|.+++++..+..  |+...   .....-.....++.+.+.+.++...+  | |.  ....++...+.+.|++++|.+.|
T Consensus       281 ~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~l  358 (409)
T TIGR00540       281 SAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAF  358 (409)
T ss_pred             HHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHH
Confidence            7777777776653  22221   11111122334556666666655542  3 33  44557777788888888888888


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          252 NLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       252 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      +........|+...+..+...+.+.|+.++|.+++++-.
T Consensus       359 e~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l  397 (409)
T TIGR00540       359 KNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL  397 (409)
T ss_pred             HHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            854443356888878888888888888888888888754

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=6.2e-08  Score=82.49  Aligned_cols=251  Identities=11%  Similarity=0.007  Sum_probs=196.4

Q ss_pred             CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC---------------C-ChhHHHHHHH
Q 036263           43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------------N-NVMVSTALLD  106 (305)
Q Consensus        43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------------~-~~~~~~~ll~  106 (305)
                      .|+.....-.+-|-..+++.+..++++...+. .++....+..-|.++...++               | ...+|-++.-
T Consensus       242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~  320 (611)
T KOG1173|consen  242 ENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC  320 (611)
T ss_pred             hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence            35555566677778899999999999998875 45566666666777777777               4 4467888888


Q ss_pred             HHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHH
Q 036263          107 MYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG  181 (305)
Q Consensus       107 ~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a  181 (305)
                      -|.-.|+.++|.+.|.+...     ...|-.....|+-.|..++|+..+...-+. ++-...-+--+---|.+.++...|
T Consensus       321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA  399 (611)
T KOG1173|consen  321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA  399 (611)
T ss_pred             HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence            88888999999999988744     456888999999999999999888765442 111222233344457788999999


Q ss_pred             HHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccC----------chhhHHHHHHHHHhcCChHHHHHHH
Q 036263          182 LWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR----------TLVSWNSIIVGFAVNGFVGEALEYF  251 (305)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~a~~~~  251 (305)
                      .++|.+....- |.|+.+.+-+.-.....+.+.+|..+|+....+          ...+++.|..+|.+.+.+++|+..+
T Consensus       400 e~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~  478 (611)
T KOG1173|consen  400 EKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY  478 (611)
T ss_pred             HHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence            99999887763 667788888877777888999999999887621          4467889999999999999999999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCcc
Q 036263          252 NLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIE  300 (305)
Q Consensus       252 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~  300 (305)
                      ++.... .+-|..++.++.-.|...|.++.|.+.|.+..   .+.|+..
T Consensus       479 q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL---~l~p~n~  523 (611)
T KOG1173|consen  479 QKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL---ALKPDNI  523 (611)
T ss_pred             HHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH---hcCCccH
Confidence            998775 34588899999999999999999999999877   7778764

>TIGR00540 hemY_coli hemY protein

Probab=99.08  E-value=1.3e-07  Score=81.91  Aligned_cols=201  Identities=11%  Similarity=-0.082  Sum_probs=137.0

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHhhcCCCC----------------CChhHH--------HHHH
Q 036263           51 SISRHCRSGCILEAALEFTRMRLYGTNP-SHITFVTLLSGCADFPS----------------NNVMVS--------TALL  105 (305)
Q Consensus        51 li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~----------------~~~~~~--------~~ll  105 (305)
                      ....+...|+++.|.+.++.+.+.  .| +......+...+...++                .+...+        ..++
T Consensus       159 ~a~l~l~~~~~~~Al~~l~~l~~~--~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l  236 (409)
T TIGR00540       159 RTRILLAQNELHAARHGVDKLLEM--APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLL  236 (409)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            355555666666666666666664  23 33344444455555554                111212        1112


Q ss_pred             HHHHhcCChHHHHHHHHhcC-----ccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHhcCcCC
Q 036263          106 DMYAKFGRMDLATVVFDVMR-----GCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT---IISVLNVCANVRT  177 (305)
Q Consensus       106 ~~~~~~g~~~~a~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~~~  177 (305)
                      ..-......+.....++..+     +...+..+...+...|+.++|.+++++..+.  .||...   ...........++
T Consensus       237 ~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~  314 (409)
T TIGR00540       237 DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPED  314 (409)
T ss_pred             HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCC
Confidence            22223334556666777776     3567888999999999999999999998875  455432   1222222344577


Q ss_pred             hhHHHHHHHHHhhcCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHh--cc--cCchhhHHHHHHHHHhcCChHHHHHHH
Q 036263          178 LGIGLWMHRYVPKQDFKDNV--RVCNTLMDVYSRFGCIEFARQVFQR--MH--KRTLVSWNSIIVGFAVNGFVGEALEYF  251 (305)
Q Consensus       178 ~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~--~~--~~~~~~~~~li~~~~~~g~~~~a~~~~  251 (305)
                      .+.+.+.++...+.. +-|.  ....++...+.+.|++++|.+.|+.  ..  .|+...+..+...+.+.|+.++|.+++
T Consensus       315 ~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~  393 (409)
T TIGR00540       315 NEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMR  393 (409)
T ss_pred             hHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            888888888887764 4455  6777899999999999999999994  42  588888999999999999999999999


Q ss_pred             HHHHH
Q 036263          252 NLMQK  256 (305)
Q Consensus       252 ~~m~~  256 (305)
                      ++...
T Consensus       394 ~~~l~  398 (409)
T TIGR00540       394 QDSLG  398 (409)
T ss_pred             HHHHH
Confidence            98543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.07  E-value=1.7e-07  Score=74.79  Aligned_cols=193  Identities=16%  Similarity=0.079  Sum_probs=148.3

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc--
Q 036263           49 TSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG--  126 (305)
Q Consensus        49 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--  126 (305)
                      -+|-+.|.+.|.++.|+++-..+.++   ||. |+..-+.+           .--|..-|.+.|-+|.|+++|..+.+  
T Consensus        73 ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdl-T~~qr~lA-----------l~qL~~Dym~aGl~DRAE~~f~~L~de~  137 (389)
T COG2956          73 LTLGNLFRSRGEVDRAIRIHQTLLES---PDL-TFEQRLLA-----------LQQLGRDYMAAGLLDRAEDIFNQLVDEG  137 (389)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhcC---CCC-chHHHHHH-----------HHHHHHHHHHhhhhhHHHHHHHHHhcch
Confidence            34556788899999999999988764   432 33322222           23456668889999999999999977  


Q ss_pred             ---cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhH
Q 036263          127 ---CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD----YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV  199 (305)
Q Consensus       127 ---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  199 (305)
                         ....-.|+..|-...+|++|.+.-+++.+.|-++.    ..-|-.+...+....+++.|..++.+..+.+ +.++..
T Consensus       138 efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRA  216 (389)
T COG2956         138 EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRA  216 (389)
T ss_pred             hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceeh
Confidence               34567789999999999999999999887665543    2345566667777888999999999888876 455566


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhcccCch----hhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263          200 CNTLMDVYSRFGCIEFARQVFQRMHKRTL----VSWNSIIVGFAVNGFVGEALEYFNLMQKG  257 (305)
Q Consensus       200 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~  257 (305)
                      --.+.+.+...|+++.|.+.++.+.+.|.    .+...|..+|...|+.++...++.++.+.
T Consensus       217 si~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~  278 (389)
T COG2956         217 SIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET  278 (389)
T ss_pred             hhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence            66778888999999999999999986544    45677788899999999888888877654

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.06  E-value=3.1e-08  Score=82.32  Aligned_cols=199  Identities=15%  Similarity=0.150  Sum_probs=158.2

Q ss_pred             hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHH
Q 036263           57 RSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWT  131 (305)
Q Consensus        57 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~  131 (305)
                      ..|++++|.+.|.+.....-.-....|++-+                   .+.+.|++++|++.|-.+..     ..+..
T Consensus       502 ~ngd~dka~~~ykeal~ndasc~ealfnigl-------------------t~e~~~~ldeald~f~klh~il~nn~evl~  562 (840)
T KOG2003|consen  502 ANGDLDKAAEFYKEALNNDASCTEALFNIGL-------------------TAEALGNLDEALDCFLKLHAILLNNAEVLV  562 (840)
T ss_pred             ecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-------------------cHHHhcCHHHHHHHHHHHHHHHHhhHHHHH
Confidence            3678889999998887543222223333222                   25678999999999977743     55666


Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc
Q 036263          132 ALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF  210 (305)
Q Consensus       132 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  210 (305)
                      .+.+.|....+...|.+++.+...  +.| |......|...|-+.|+...|.+.+-.--+. ++.+..+...|...|...
T Consensus       563 qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidt  639 (840)
T KOG2003|consen  563 QIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDT  639 (840)
T ss_pred             HHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhh
Confidence            778888888999999999866543  455 6888899999999999999999987665444 577899999999999999


Q ss_pred             CChHHHHHHHHhcc--cCchhhHHHHHHHH-HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 036263          211 GCIEFARQVFQRMH--KRTLVSWNSIIVGF-AVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL  278 (305)
Q Consensus       211 g~~~~a~~~~~~~~--~~~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  278 (305)
                      .-+++|...|++..  +|+..-|..||..| .+.|++.+|+++|+..... ++-|..++..|++.+...|-
T Consensus       640 qf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  640 QFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence            99999999999875  89999999998765 5689999999999998765 77789999999999887764

>PRK12370 invasion protein regulator; Provisional

Probab=99.05  E-value=1.2e-07  Score=85.18  Aligned_cols=206  Identities=13%  Similarity=0.069  Sum_probs=144.0

Q ss_pred             CChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHH
Q 036263           59 GCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTAL  133 (305)
Q Consensus        59 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~l  133 (305)
                      +++++|...+++..+  +.|+.                 ...+..+...+...|++++|...|++...     ...+..+
T Consensus       318 ~~~~~A~~~~~~Al~--ldP~~-----------------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~l  378 (553)
T PRK12370        318 NAMIKAKEHAIKATE--LDHNN-----------------PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYY  378 (553)
T ss_pred             hHHHHHHHHHHHHHh--cCCCC-----------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            457889999998877  35542                 23345555667889999999999998854     4468888


Q ss_pred             HHHHHcCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC
Q 036263          134 LNGFVKRDYFEEALEYFRVMQISGVEPDY-LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC  212 (305)
Q Consensus       134 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  212 (305)
                      ...+...|++++|...+++..+.  .|+. ..+..+...+...|++++|...++++.+...+-+...+..+..++...|+
T Consensus       379 g~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~  456 (553)
T PRK12370        379 GWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGK  456 (553)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCC
Confidence            89999999999999999998775  4542 23334444566688999999999998776423345667788888999999


Q ss_pred             hHHHHHHHHhcccC---chhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 036263          213 IEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV-FKTDEVSFTGALTACSHAGLIEDGLQYFDI  288 (305)
Q Consensus       213 ~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  288 (305)
                      .++|...++++...   +....+.+...|+..|  ++|...++.+.+.. -.|....+..++.  .-.|+-+.+..+ +.
T Consensus       457 ~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~-~~  531 (553)
T PRK12370        457 HELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVL--VAHGEAIAEKMW-NK  531 (553)
T ss_pred             HHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHH--HHHhhhHHHHHH-HH
Confidence            99999999997742   3344556666777777  47877777765531 2333333333333  334555555544 66


Q ss_pred             HH
Q 036263          289 MK  290 (305)
Q Consensus       289 m~  290 (305)
                      +.
T Consensus       532 ~~  533 (553)
T PRK12370        532 FK  533 (553)
T ss_pred             hh
Confidence            65

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.04  E-value=6.7e-09  Score=89.77  Aligned_cols=193  Identities=19%  Similarity=0.129  Sum_probs=149.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhcCc---------------------------------------cccHHHHHHHHHcC
Q 036263          100 VSTALLDMYAKFGRMDLATVVFDVMRG---------------------------------------CDFWTALLNGFVKR  140 (305)
Q Consensus       100 ~~~~ll~~~~~~g~~~~a~~~~~~~~~---------------------------------------~~~~~~li~~~~~~  140 (305)
                      +..-+..+|...+++++|+.+|+.+++                                       ..+|-++..+|.-.
T Consensus       355 vl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQ  434 (638)
T KOG1126|consen  355 VLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQ  434 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhh
Confidence            345566778888999999999988754                                       45588888899999


Q ss_pred             CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 036263          141 DYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV  219 (305)
Q Consensus       141 g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  219 (305)
                      ++++.|++.|++..+  +.| ...+|+.+-.-+.....+|.|...|+..+... +-+-..|.-+.-.|.+.++++.|+-.
T Consensus       435 kdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~  511 (638)
T KOG1126|consen  435 KDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFH  511 (638)
T ss_pred             hHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchhhHHHHH
Confidence            999999999988766  567 67888888888888899999999998876543 22333445577889999999999999


Q ss_pred             HHhcccC---chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCC
Q 036263          220 FQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVS  296 (305)
Q Consensus       220 ~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~  296 (305)
                      |++..+-   +.+....+...+-+.|+.|+|+.++++......+ |..+--.-...+...+++++|+..+++++   .+.
T Consensus       512 fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk---~~v  587 (638)
T KOG1126|consen  512 FQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELK---ELV  587 (638)
T ss_pred             HHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHH---HhC
Confidence            9999853   5566667777888999999999999998886533 33333344556667799999999999998   555


Q ss_pred             CCc
Q 036263          297 PQI  299 (305)
Q Consensus       297 p~~  299 (305)
                      |+.
T Consensus       588 P~e  590 (638)
T KOG1126|consen  588 PQE  590 (638)
T ss_pred             cch
Confidence            654

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=9.4e-08  Score=79.63  Aligned_cols=217  Identities=14%  Similarity=0.073  Sum_probs=170.2

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc------
Q 036263           53 SRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG------  126 (305)
Q Consensus        53 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------  126 (305)
                      .++-...+.+++.+=.+.....|..-+...- +.+                 ..+.-...++|.|+.+|+++..      
T Consensus       235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~-~~~-----------------A~~~y~~rDfD~a~s~Feei~knDPYRl  296 (559)
T KOG1155|consen  235 KAYQELHQHEEALQKKERLSSVGFPNSMYIK-TQI-----------------AAASYNQRDFDQAESVFEEIRKNDPYRL  296 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCccHHHH-HHH-----------------HHHHhhhhhHHHHHHHHHHHHhcCCCcc
Confidence            4555566777777777777776654332211 111                 1123345788888888888744      


Q ss_pred             ---------------------------------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHh
Q 036263          127 ---------------------------------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVC  172 (305)
Q Consensus       127 ---------------------------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~  172 (305)
                                                       ..|...+..-|.-.++.+.|...|++..+.  .| ....|+.+-.-|
T Consensus       297 ~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEy  374 (559)
T KOG1155|consen  297 DDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEY  374 (559)
T ss_pred             hhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHH
Confidence                                             233444555666678899999999987764  45 466788888899


Q ss_pred             cCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHH
Q 036263          173 ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALE  249 (305)
Q Consensus       173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~  249 (305)
                      ....+...|.+-++..++-. +.|-..|-.|.++|.-.+...-|.-.|++..+  | |...|.+|..+|-+.++.++|.+
T Consensus       375 vEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK  453 (559)
T KOG1155|consen  375 VEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK  453 (559)
T ss_pred             HHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH
Confidence            99999999999999999876 77888999999999999999999999998873  4 78999999999999999999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 036263          250 YFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK  291 (305)
Q Consensus       250 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  291 (305)
                      -|++....|- .+...+..|.+.|.+.++.++|-..|+.-..
T Consensus       454 Cykrai~~~d-te~~~l~~LakLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  454 CYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             HHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            9999988763 3668899999999999999999988887663

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.99  E-value=1.6e-06  Score=80.41  Aligned_cols=186  Identities=8%  Similarity=-0.049  Sum_probs=149.3

Q ss_pred             HHHHHHHhcCChHHHHHHHHhcCc------cccHHHHHHHHHcCCChHHHHHHHHHHHHcC-----CCCCHHHHHHHHHH
Q 036263          103 ALLDMYAKFGRMDLATVVFDVMRG------CDFWTALLNGFVKRDYFEEALEYFRVMQISG-----VEPDYLTIISVLNV  171 (305)
Q Consensus       103 ~ll~~~~~~g~~~~a~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~p~~~t~~~ll~~  171 (305)
                      -.+.++.+.|+..++++.|+.++.      ..+-..+..+|...+++++|+.++++.....     ..++......|..+
T Consensus       297 Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA  376 (822)
T PRK14574        297 DRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYS  376 (822)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHH
Confidence            455677788899999999999974      2235678899999999999999999986542     12344456789999


Q ss_pred             hcCcCChhHHHHHHHHHhhcCC-----------CC--Ch-hHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHH
Q 036263          172 CANVRTLGIGLWMHRYVPKQDF-----------KD--NV-RVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSI  234 (305)
Q Consensus       172 ~~~~~~~~~a~~~~~~~~~~~~-----------~~--~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l  234 (305)
                      +...+++++|..+++.+.+.-.           .|  |- ..+..++..+...|++.+|++.++++..  | |......+
T Consensus       377 ~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~  456 (822)
T PRK14574        377 LNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIAL  456 (822)
T ss_pred             HHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            9999999999999999987311           12  22 2345567888999999999999999984  3 78889999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          235 IVGFAVNGFVGEALEYFNLMQKGVFKTD-EVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       235 i~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      ...+...|.+..|.+.++.....  .|+ ..+......+....|++++|..+.+.+.
T Consensus       457 A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~  511 (822)
T PRK14574        457 ASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVI  511 (822)
T ss_pred             HHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            99999999999999999777664  454 4666677888889999999999998876

>PF12854 PPR_1: PPR repeat

Probab=98.98  E-value=1.1e-09  Score=58.25  Aligned_cols=33  Identities=30%  Similarity=0.482  Sum_probs=23.3

Q ss_pred             CCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263          192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH  224 (305)
Q Consensus       192 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  224 (305)
                      |+.||..+|+++|++||+.|++++|.++|++|+
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            566777777777777777777777777777663

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.97  E-value=7.2e-08  Score=77.00  Aligned_cols=226  Identities=13%  Similarity=0.042  Sum_probs=179.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc-
Q 036263           48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG-  126 (305)
Q Consensus        48 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-  126 (305)
                      -+.+-++|.+.|.+.+|...|+.-.+.  .|-+.||..                  |-.+|-+..+.+.|+.++.+-.+ 
T Consensus       226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfll------------------LskvY~ridQP~~AL~~~~~gld~  285 (478)
T KOG1129|consen  226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLL------------------LSKVYQRIDQPERALLVIGEGLDS  285 (478)
T ss_pred             HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHH------------------HHHHHHHhccHHHHHHHHhhhhhc
Confidence            356778899999999999999887774  555555544                  44558888999999999887765 


Q ss_pred             ---ccc-HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHH
Q 036263          127 ---CDF-WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT  202 (305)
Q Consensus       127 ---~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  202 (305)
                         ..+ ..-+.+.+-..++.++|.++++...+.. ..+.....++...|.-.++++.|..+++++.+.| .-+...|+.
T Consensus       286 fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~N  363 (478)
T KOG1129|consen  286 FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCN  363 (478)
T ss_pred             CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhh
Confidence               223 3345577778899999999999887642 3356677788888899999999999999999999 467888999


Q ss_pred             HHHHHHhcCChHHHHHHHHhcc----cCc--hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 036263          203 LMDVYSRFGCIEFARQVFQRMH----KRT--LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA  276 (305)
Q Consensus       203 li~~~~~~g~~~~a~~~~~~~~----~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~  276 (305)
                      +.-+|.-.+++|-+..-|++..    +|+  ...|-.+-...+..||+..|.+-|+-....+- -+...++.|.---.+.
T Consensus       364 igLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~  442 (478)
T KOG1129|consen  364 IGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARS  442 (478)
T ss_pred             HHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhc
Confidence            9999999999999999888876    233  34677888888899999999999998877642 3557888888778899


Q ss_pred             CcHHHHHHHHHHHHHHhCCCCCc
Q 036263          277 GLIEDGLQYFDIMKKIYRVSPQI  299 (305)
Q Consensus       277 g~~~~a~~~~~~m~~~~~~~p~~  299 (305)
                      |++++|..+++...   .+.|+.
T Consensus       443 G~i~~Arsll~~A~---s~~P~m  462 (478)
T KOG1129|consen  443 GDILGARSLLNAAK---SVMPDM  462 (478)
T ss_pred             CchHHHHHHHHHhh---hhCccc
Confidence            99999999999887   555654

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.95  E-value=1.2e-06  Score=66.73  Aligned_cols=200  Identities=11%  Similarity=-0.032  Sum_probs=165.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhc
Q 036263          100 VSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCA  173 (305)
Q Consensus       100 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~  173 (305)
                      +..-|.-.|...|+...|..-+++..+     ..+|..+...|.+.|..+.|.+-|+....  +.| +..+.|..-.-+|
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC  114 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHH
Confidence            345566789999999999999988855     56789999999999999999999998766  356 4667777777788


Q ss_pred             CcCChhHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHH
Q 036263          174 NVRTLGIGLWMHRYVPKQDFKD-NVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALE  249 (305)
Q Consensus       174 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~  249 (305)
                      ..|++++|.+.|++....-.-+ -..+|..+.-+..+.|+.+.|...|++..+  | ...+.-.+.......|++..|..
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence            9999999999999988764333 367888888899999999999999999885  3 44677788888999999999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCcccc
Q 036263          250 YFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHH  302 (305)
Q Consensus       250 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y  302 (305)
                      ++++....|. ++...+...|+---+.|+.+.+.++=..+.+.+.-.+...+|
T Consensus       195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~f  246 (250)
T COG3063         195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQTF  246 (250)
T ss_pred             HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHhH
Confidence            9999988765 899999999998889999999999888888666555554444

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.94  E-value=1.9e-07  Score=77.73  Aligned_cols=236  Identities=11%  Similarity=0.097  Sum_probs=167.2

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCHh-hHHHHHHhhcCCCC------------CChhHHHHH-----HHHHHhcCChH
Q 036263           54 RHCRSGCILEAALEFTRMRLYGTNPSHI-TFVTLLSGCADFPS------------NNVMVSTAL-----LDMYAKFGRMD  115 (305)
Q Consensus        54 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~------------~~~~~~~~l-----l~~~~~~g~~~  115 (305)
                      -+.+.|+++.|++++.-+.+..-+.-+. .-+...-.+.+.|.            .+..-||.-     .+.....|+++
T Consensus       428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~d  507 (840)
T KOG2003|consen  428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLD  507 (840)
T ss_pred             HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHH
Confidence            4678999999999998887654332222 11221222222222            111112211     11223457889


Q ss_pred             HHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhh
Q 036263          116 LATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK  190 (305)
Q Consensus       116 ~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~  190 (305)
                      .|.+.+.+...     +.....+.-.+-..|++++|++.|-.+..- +.-+..+..-+.+.|-...+...|.+++-+...
T Consensus       508 ka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s  586 (840)
T KOG2003|consen  508 KAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS  586 (840)
T ss_pred             HHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc
Confidence            99998887755     222233444567789999999999776542 234566777788888888899999998877765


Q ss_pred             cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 036263          191 QDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT  267 (305)
Q Consensus       191 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~  267 (305)
                      . ++.|+.+..-|...|-+.|+-..|.+.+-+--.   -++.+..-|..-|....-+++++.+|++..-  ++|+..-|-
T Consensus       587 l-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwq  663 (840)
T KOG2003|consen  587 L-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQ  663 (840)
T ss_pred             c-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHH
Confidence            5 577889999999999999999999887655442   3777877788888999999999999998766  789999999


Q ss_pred             HHHHHH-hccCcHHHHHHHHHHHHHHh
Q 036263          268 GALTAC-SHAGLIEDGLQYFDIMKKIY  293 (305)
Q Consensus       268 ~li~~~-~~~g~~~~a~~~~~~m~~~~  293 (305)
                      .++..| .+.|++..|.+++++..+++
T Consensus       664 lmiasc~rrsgnyqka~d~yk~~hrkf  690 (840)
T KOG2003|consen  664 LMIASCFRRSGNYQKAFDLYKDIHRKF  690 (840)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence            888755 57899999999999987443

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.92  E-value=1.5e-06  Score=71.84  Aligned_cols=195  Identities=12%  Similarity=-0.009  Sum_probs=120.9

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 036263           46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMR  125 (305)
Q Consensus        46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  125 (305)
                      ..|...-..+.+.|+.++|...|++..+  ..|+                 +...|+.+...+...|++++|...|+...
T Consensus        65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~--l~P~-----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al  125 (296)
T PRK11189         65 QLHYERGVLYDSLGLRALARNDFSQALA--LRPD-----------------MADAYNYLGIYLTQAGNFDAAYEAFDSVL  125 (296)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCC-----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4566666677788888888888888776  3454                 23345666677888888888888888774


Q ss_pred             c-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHH
Q 036263          126 G-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC  200 (305)
Q Consensus       126 ~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  200 (305)
                      +     ...|..+...+...|++++|.+.|+...+.  .|+..........+...++.++|...++...... .++...+
T Consensus       126 ~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~  202 (296)
T PRK11189        126 ELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW  202 (296)
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH
Confidence            4     345677777788888888888888877664  4543222222223345667888888886654332 2332222


Q ss_pred             HHHHHHHHhcCChHHHHHHHHhcc---c-------CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 036263          201 NTLMDVYSRFGCIEFARQVFQRMH---K-------RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT  267 (305)
Q Consensus       201 ~~li~~~~~~g~~~~a~~~~~~~~---~-------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~  267 (305)
                       .+..  ...|+..++ +.++.+.   +       .....|..+...+...|++++|...|++..+.+ +||..-+.
T Consensus       203 -~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~  274 (296)
T PRK11189        203 -NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHR  274 (296)
T ss_pred             -HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHH
Confidence             2222  334444333 2333222   1       133577788888888888888888888887754 23444333

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.91  E-value=2.9e-07  Score=79.95  Aligned_cols=202  Identities=12%  Similarity=-0.005  Sum_probs=154.0

Q ss_pred             CCCCchHh-HHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChH
Q 036263           40 STIDTTVQ-WTSSISRHCRSGCILEAALEFTRMRLY---GTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMD  115 (305)
Q Consensus        40 ~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~  115 (305)
                      ...|.+.+ -+.+-..|...+++++|..+|+++...   ...++...+              ..+++.|..+|.+.|+++
T Consensus       235 ~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~v--------------a~~l~nLa~ly~~~GKf~  300 (508)
T KOG1840|consen  235 LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAV--------------AATLNNLAVLYYKQGKFA  300 (508)
T ss_pred             ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHH--------------HHHHHHHHHHHhccCChH
Confidence            34455543 344777888999999999999998753   233443333              344577788899999999


Q ss_pred             HHHHHHHhcCc-------------cccHHHHHHHHHcCCChHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHhcCc
Q 036263          116 LATVVFDVMRG-------------CDFWTALLNGFVKRDYFEEALEYFRVMQIS---GVEPD----YLTIISVLNVCANV  175 (305)
Q Consensus       116 ~a~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~----~~t~~~ll~~~~~~  175 (305)
                      +|...+++..+             ...++.+...+...+++++|..+++...+.   -+.++    ..+++.|-..|...
T Consensus       301 EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~  380 (508)
T KOG1840|consen  301 EAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKM  380 (508)
T ss_pred             HHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHh
Confidence            99988887744             233788888999999999999999865432   12222    46789999999999


Q ss_pred             CChhHHHHHHHHHhhcC-------CCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---------Cc-hhhHHHHHHHH
Q 036263          176 RTLGIGLWMHRYVPKQD-------FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---------RT-LVSWNSIIVGF  238 (305)
Q Consensus       176 ~~~~~a~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---------~~-~~~~~~li~~~  238 (305)
                      |++++|.++++..+...       ..-....++.+...|.+.++.++|.++|.+...         |+ ..+|..|...|
T Consensus       381 gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y  460 (508)
T KOG1840|consen  381 GKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALY  460 (508)
T ss_pred             cchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence            99999999999876431       122356678888999999999999999988762         33 36899999999


Q ss_pred             HhcCChHHHHHHHHHHH
Q 036263          239 AVNGFVGEALEYFNLMQ  255 (305)
Q Consensus       239 ~~~g~~~~a~~~~~~m~  255 (305)
                      .+.|+++.|.++.+...
T Consensus       461 ~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  461 RAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHcccHHHHHHHHHHHH
Confidence            99999999999987764

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.91  E-value=2.3e-06  Score=70.28  Aligned_cols=205  Identities=10%  Similarity=-0.050  Sum_probs=159.3

Q ss_pred             CCCchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 036263           41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVV  120 (305)
Q Consensus        41 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~  120 (305)
                      ...++........+|.+.|++.+...++..|.+.|+--|+..-..           ...+|..+++-....+..+.-...
T Consensus       183 ~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l-----------e~~a~~glL~q~~~~~~~~gL~~~  251 (400)
T COG3071         183 TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL-----------EQQAWEGLLQQARDDNGSEGLKTW  251 (400)
T ss_pred             CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH-----------HHHHHHHHHHHHhccccchHHHHH
Confidence            344667778888899999999999999999988886655442211           223456677767777777777778


Q ss_pred             HHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCC
Q 036263          121 FDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD  195 (305)
Q Consensus       121 ~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  195 (305)
                      +++.+.     ...-.+++.-+.+.|+.++|.++..+-.+++..|+    -...-.+.+.++.+.-.+..+.-.+.. +.
T Consensus       252 W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~  326 (400)
T COG3071         252 WKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PE  326 (400)
T ss_pred             HHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CC
Confidence            888865     45567788889999999999999999988877776    333345667777777777777665543 45


Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhcc--cCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 036263          196 NVRVCNTLMDVYSRFGCIEFARQVFQRMH--KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT  261 (305)
Q Consensus       196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  261 (305)
                      ++..+.+|...|.+.+.+.+|...|+...  .|+..+|+.+.++|.+.|+..+|.+++++....-.+|
T Consensus       327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~  394 (400)
T COG3071         327 DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP  394 (400)
T ss_pred             ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence            56889999999999999999999999776  4899999999999999999999999999866443334

>PF12854 PPR_1: PPR repeat

Probab=98.91  E-value=1.7e-09  Score=57.40  Aligned_cols=34  Identities=24%  Similarity=0.459  Sum_probs=27.7

Q ss_pred             CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          257 GVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       257 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      .|+.||..||+.||.+|++.|++++|.++|++|.
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            3678888888888888888888888888888773

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.87  E-value=7.1e-07  Score=73.72  Aligned_cols=185  Identities=11%  Similarity=0.029  Sum_probs=133.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhc
Q 036263          100 VSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD-YLTIISVLNVCA  173 (305)
Q Consensus       100 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~  173 (305)
                      .|..+...+.+.|+.++|...|++...     ...|+.+...+...|++++|...|++..+  +.|+ ..++..+..++.
T Consensus        66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~  143 (296)
T PRK11189         66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIALY  143 (296)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence            355666678899999999999988854     56799999999999999999999999876  4564 677888888899


Q ss_pred             CcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccC-chhhHHHHHHHHHhcCChHHHHHHHH
Q 036263          174 NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR-TLVSWNSIIVGFAVNGFVGEALEYFN  252 (305)
Q Consensus       174 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~  252 (305)
                      ..|++++|.+.++...+..  |+..........+...++.++|...|++.... +...|.. .......|+...+ +.+.
T Consensus       144 ~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~~~~~~lg~~~~~-~~~~  219 (296)
T PRK11189        144 YGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW-NIVEFYLGKISEE-TLME  219 (296)
T ss_pred             HCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH-HHHHHHccCCCHH-HHHH
Confidence            9999999999999998865  33222222223345567899999999765432 2223332 2333445666554 3455


Q ss_pred             HHHHC---C--CCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          253 LMQKG---V--FKT-DEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       253 ~m~~~---g--~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      .+.+.   .  +.| ....|..+...+.+.|++++|...|+...
T Consensus       220 ~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al  263 (296)
T PRK11189        220 RLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL  263 (296)
T ss_pred             HHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            54432   1  111 23578888999999999999999999887

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.81  E-value=2.7e-07  Score=73.76  Aligned_cols=196  Identities=14%  Similarity=0.078  Sum_probs=162.4

Q ss_pred             CCchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036263           42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVF  121 (305)
Q Consensus        42 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~  121 (305)
                      .|-+.||-.|-++|.+-.+++.|+.+|.+-.+  ..|-..||.                 ....+.+-..++.++|.+++
T Consensus       253 ~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l-----------------~g~ARi~eam~~~~~a~~lY  313 (478)
T KOG1129|consen  253 FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYL-----------------LGQARIHEAMEQQEDALQLY  313 (478)
T ss_pred             CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhh-----------------hhhHHHHHHHHhHHHHHHHH
Confidence            46677888899999999999999999998877  467766663                 23345566778999999999


Q ss_pred             HhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC
Q 036263          122 DVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN  196 (305)
Q Consensus       122 ~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  196 (305)
                      +...+     +....++...|.-.++++.|+.+++++.+.|+. +...|..+--+|.-.+++|-+..-|++....--.|+
T Consensus       314 k~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~  392 (478)
T KOG1129|consen  314 KLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPG  392 (478)
T ss_pred             HHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcc
Confidence            98865     444566777888899999999999999999864 667899999999999999999999988776543344


Q ss_pred             --hhHHHHHHHHHHhcCChHHHHHHHHhcccC---chhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263          197 --VRVCNTLMDVYSRFGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG  257 (305)
Q Consensus       197 --~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  257 (305)
                        ..+|..+.......|++.-|.+.|+-....   +...+|.|...-.+.|++++|..++......
T Consensus       393 ~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  393 QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence              457888888889999999999999988743   5688999999999999999999999988773

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.77  E-value=1.1e-05  Score=61.67  Aligned_cols=200  Identities=14%  Similarity=-0.005  Sum_probs=161.8

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 036263           46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMR  125 (305)
Q Consensus        46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  125 (305)
                      .+.-.+--+|.+.|+...|..-+++..+.  .|+.                 ..+|..+...|-+.|+.+.|.+-|++..
T Consensus        36 ~arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~-----------------~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl   96 (250)
T COG3063          36 KARLQLALGYLQQGDYAQAKKNLEKALEH--DPSY-----------------YLAHLVRAHYYQKLGENDLADESYRKAL   96 (250)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccc-----------------HHHHHHHHHHHHHcCChhhHHHHHHHHH
Confidence            34566777899999999999999999874  4442                 2345667778999999999999999885


Q ss_pred             c-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhH
Q 036263          126 G-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV  199 (305)
Q Consensus       126 ~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  199 (305)
                      +     ..+.|....-+|..|++++|...|++....-.-| -..||..+.-+..+.|+++.|...|++..+.. +-....
T Consensus        97 sl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~  175 (250)
T COG3063          97 SLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPA  175 (250)
T ss_pred             hcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChH
Confidence            5     6778999999999999999999999987653333 36788888888899999999999999998876 445667


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 036263          200 CNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT  267 (305)
Q Consensus       200 ~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~  267 (305)
                      .-.+.+...+.|++-.|...++....   ++..+.-.-|+.-...|+.+.+.++=..+.+.  -|...-|-
T Consensus       176 ~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q  244 (250)
T COG3063         176 LLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQ  244 (250)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHH
Confidence            78888899999999999999998875   46666667788888999999998887777763  35554443

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=98.76  E-value=4.2e-07  Score=81.40  Aligned_cols=203  Identities=13%  Similarity=0.104  Sum_probs=135.3

Q ss_pred             HHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc------cccHHHHHHHHHc
Q 036263           66 LEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG------CDFWTALLNGFVK  139 (305)
Q Consensus        66 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~~~~~li~~~~~  139 (305)
                      .++-.+...|+.|+..||.+++.-                  ||..|+++.|- +|.-|.-      ...|+.++.+...
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiar------------------Yc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~   71 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIAR------------------YCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKE   71 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHH------------------HcccCCCcccc-chhhhhcccccccchhHHHHHhcccc
Confidence            456778888999998888666554                  78889999888 8877743      5568889988888


Q ss_pred             CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhH---HHHHHHHHh----hcCCCCChh--------------
Q 036263          140 RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGI---GLWMHRYVP----KQDFKDNVR--------------  198 (305)
Q Consensus       140 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~---a~~~~~~~~----~~~~~~~~~--------------  198 (305)
                      .++.+.+.           .|...||+.|..+|...|+...   +++.+..+.    ..|+.....              
T Consensus        72 And~Enpk-----------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lp  140 (1088)
T KOG4318|consen   72 ANDAENPK-----------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLP  140 (1088)
T ss_pred             cccccCCC-----------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccch
Confidence            88877765           7888999999999999998654   333222221    222211111              


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhccc--CchhhHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036263          199 VCNTLMDVYSRFGCIEFARQVFQRMHK--RTLVSWNSIIVGFAVNG-FVGEALEYFNLMQKGVFKTDEVSFTGALTACSH  275 (305)
Q Consensus       199 ~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~  275 (305)
                      --...+.-..-.|.++.+.+++..++.  .+. .+-.+++-+.... .+++-..+.+...+   .|+..+|..++.+-.-
T Consensus       141 da~n~illlv~eglwaqllkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~ala  216 (1088)
T KOG4318|consen  141 DAENAILLLVLEGLWAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALA  216 (1088)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHh
Confidence            112233333445666777777766652  111 1111244333322 33444444443333   5999999999999999


Q ss_pred             cCcHHHHHHHHHHHHHHhCCCCCccccc
Q 036263          276 AGLIEDGLQYFDIMKKIYRVSPQIEHHG  303 (305)
Q Consensus       276 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~  303 (305)
                      .|+.+.|..++.+|+ ..|+..+.+.|.
T Consensus       217 ag~~d~Ak~ll~emk-e~gfpir~HyFw  243 (1088)
T KOG4318|consen  217 AGDVDGAKNLLYEMK-EKGFPIRAHYFW  243 (1088)
T ss_pred             cCchhhHHHHHHHHH-HcCCCcccccch
Confidence            999999999999999 999988887664

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.76  E-value=1.5e-05  Score=70.12  Aligned_cols=247  Identities=13%  Similarity=0.015  Sum_probs=161.8

Q ss_pred             CchH-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhc----CCCCCChhHHHHHHHHHHhc------
Q 036263           43 DTTV-QWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA----DFPSNNVMVSTALLDMYAKF------  111 (305)
Q Consensus        43 ~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~~~~~~~~~~~ll~~~~~~------  111 (305)
                      +|.. ........+.+.|+.++|..+|..+.+.  -|+...|...+..+.    ...+.+......+...+...      
T Consensus        35 ~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~  112 (517)
T PF12569_consen   35 LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDA  112 (517)
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccc
Confidence            4544 4555667888999999999999999985  677777766665554    21111111111111111110      


Q ss_pred             ----------C-ChH-HHHHHHHhcCc---cccHHHHHHHHHcCCChHHHHHHHHHHHHc----C----------CCCCH
Q 036263          112 ----------G-RMD-LATVVFDVMRG---CDFWTALLNGFVKRDYFEEALEYFRVMQIS----G----------VEPDY  162 (305)
Q Consensus       112 ----------g-~~~-~a~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g----------~~p~~  162 (305)
                                | .+. .+...+..+..   +.+|+.|-..|....+.+-..+++......    |          -.|+.
T Consensus       113 ~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~  192 (517)
T PF12569_consen  113 PRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPST  192 (517)
T ss_pred             hhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchH
Confidence                      0 000 11111111111   455777777777666666666666665432    1          12333


Q ss_pred             --HHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccC---chhhHHHHHHH
Q 036263          163 --LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR---TLVSWNSIIVG  237 (305)
Q Consensus       163 --~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~  237 (305)
                        +++.-+...|-..|+.++|.++++..++.. +..+..|..-.+.|-+.|++.+|.+.++...+-   |-..=+-.+..
T Consensus       193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy  271 (517)
T PF12569_consen  193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKY  271 (517)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHH
Confidence              355666777889999999999999998875 444778888899999999999999999988864   44566667888


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHH--------HHHHHHHHHhccCcHHHHHHHHHHHHHH
Q 036263          238 FAVNGFVGEALEYFNLMQKGVFKTDEV--------SFTGALTACSHAGLIEDGLQYFDIMKKI  292 (305)
Q Consensus       238 ~~~~g~~~~a~~~~~~m~~~g~~p~~~--------~~~~li~~~~~~g~~~~a~~~~~~m~~~  292 (305)
                      +.++|++++|.+++....+.+..|-..        .......+|.+.|++..|++-|..+.+.
T Consensus       272 ~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~  334 (517)
T PF12569_consen  272 LLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH  334 (517)
T ss_pred             HHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            899999999999999887776544321        1234456788999999998888877643

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.73  E-value=2.8e-06  Score=71.59  Aligned_cols=184  Identities=11%  Similarity=0.093  Sum_probs=114.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcC
Q 036263          101 STALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCAN  174 (305)
Q Consensus       101 ~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~  174 (305)
                      |--+...|....+-++.+..|+...+     ..+|.--.....-.+++++|..=|++...  +.| +...|.-+-.+..+
T Consensus       363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr  440 (606)
T KOG0547|consen  363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYR  440 (606)
T ss_pred             HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHH
Confidence            33344444444455555555544432     34444444444445556666666655443  344 34445555555567


Q ss_pred             cCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--Cc-------hh--hHHHHHHHHHhcCC
Q 036263          175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RT-------LV--SWNSIIVGFAVNGF  243 (305)
Q Consensus       175 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-------~~--~~~~li~~~~~~g~  243 (305)
                      .+++++++..|++..++ ++..+.+|+-....+...+++++|.+.|+...+  |+       ..  ..-.++.. -=.++
T Consensus       441 ~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d  518 (606)
T KOG0547|consen  441 QHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL-QWKED  518 (606)
T ss_pred             HHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh-chhhh
Confidence            77888888888887766 566778888888888888888888888887762  22       11  11111111 12377


Q ss_pred             hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          244 VGEALEYFNLMQKGVFKT-DEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       244 ~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      +..|.+++.+..+.  .| ....|..|...-...|+.++|+++|++-.
T Consensus       519 ~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa  564 (606)
T KOG0547|consen  519 INQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSA  564 (606)
T ss_pred             HHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            88888888887774  34 34678888888888999999999998653

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.71  E-value=1.6e-06  Score=70.94  Aligned_cols=148  Identities=12%  Similarity=0.123  Sum_probs=106.3

Q ss_pred             HHHHhcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH----hcCcCChhHH
Q 036263          106 DMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNV----CANVRTLGIG  181 (305)
Q Consensus       106 ~~~~~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~----~~~~~~~~~a  181 (305)
                      ..+...|++++|+++++...+.......+..+.+.++++.|.+.++.|.+.  ..|. +..-+..+    ......+.+|
T Consensus       110 ~i~~~~~~~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~~~~A  186 (290)
T PF04733_consen  110 TILFHEGDYEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEKYQDA  186 (290)
T ss_dssp             HHHCCCCHHHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTCCCHH
T ss_pred             HHHHHcCCHHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchhHHHH
Confidence            445667899999988887755566667788899999999999999998764  3343 33333333    3334578899


Q ss_pred             HHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCCh-HHHHHHHHHHHHC
Q 036263          182 LWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFV-GEALEYFNLMQKG  257 (305)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~  257 (305)
                      ..+|+++.+. .++++.+.+.+..++...|++++|.+++++..+   .+..+...++......|+. +.+.+++.+++..
T Consensus       187 ~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  187 FYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             HHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             HHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            9999997665 467888888889999999999999999888764   2455666677777777777 6677788888774

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.68  E-value=4.5e-05  Score=68.95  Aligned_cols=245  Identities=11%  Similarity=0.026  Sum_probs=158.7

Q ss_pred             hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC----------------CChhHHHHHHHHH
Q 036263           45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----------------NNVMVSTALLDMY  108 (305)
Q Consensus        45 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------------~~~~~~~~ll~~~  108 (305)
                      +...-.....+.-.|++++|.+++.+..+. .+-....|-+|-..+...|+                .|...|..+-...
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkq-dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls  217 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQ-DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS  217 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            333333333444459999999999998875 23356677777777777777                5567888888888


Q ss_pred             HhcCChHHHHHHHHhcCc--cc---cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhcCcCChh
Q 036263          109 AKFGRMDLATVVFDVMRG--CD---FWTALLNGFVKRDYFEEALEYFRVMQISGVEPD----YLTIISVLNVCANVRTLG  179 (305)
Q Consensus       109 ~~~g~~~~a~~~~~~~~~--~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~  179 (305)
                      .+.|+++.|.-.|.++.+  ..   ..---...|-+.|+...|++.|.++....-+.|    ..+--.++..+...++.+
T Consensus       218 ~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e  297 (895)
T KOG2076|consen  218 EQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE  297 (895)
T ss_pred             HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence            889999999999988855  11   222334567778888888888888876522112    122223344555555556


Q ss_pred             HHHHHHHHHhhc-CCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---------------------------------
Q 036263          180 IGLWMHRYVPKQ-DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---------------------------------  225 (305)
Q Consensus       180 ~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---------------------------------  225 (305)
                      .|.+.++..... +-..+...++.+...|.+...++.|......+..                                 
T Consensus       298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~  377 (895)
T KOG2076|consen  298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD  377 (895)
T ss_pred             HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence            666666655442 1133444555666666655555555544433221                                 


Q ss_pred             ----------------------------------CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036263          226 ----------------------------------RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT  271 (305)
Q Consensus       226 ----------------------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~  271 (305)
                                                        .++..|.-+..+|...|++.+|+.+|..+......-+...|..+..
T Consensus       378 l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~  457 (895)
T KOG2076|consen  378 LRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR  457 (895)
T ss_pred             chhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence                                              0223566677778888888888888888877644445667777778


Q ss_pred             HHhccCcHHHHHHHHHHHH
Q 036263          272 ACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       272 ~~~~~g~~~~a~~~~~~m~  290 (305)
                      +|...|.+++|.+.|+...
T Consensus       458 c~~~l~e~e~A~e~y~kvl  476 (895)
T KOG2076|consen  458 CYMELGEYEEAIEFYEKVL  476 (895)
T ss_pred             HHHHHhhHHHHHHHHHHHH
Confidence            8888888888888888776

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.68  E-value=3.8e-06  Score=78.83  Aligned_cols=210  Identities=14%  Similarity=0.068  Sum_probs=166.7

Q ss_pred             CHhhHHHHHHhhcCCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhcCc----------cccHHHHHHHHHcCCChHHHH
Q 036263           79 SHITFVTLLSGCADFPSNN-VMVSTALLDMYAKFGRMDLATVVFDVMRG----------CDFWTALLNGFVKRDYFEEAL  147 (305)
Q Consensus        79 ~~~~~~~ll~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----------~~~~~~li~~~~~~g~~~~a~  147 (305)
                      +..-|.-++++.     |+ ...|-..|......++++.|.++++++..          ...|.++++.-..-|.-+...
T Consensus      1443 saeDferlvrss-----PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~ 1517 (1710)
T KOG1070|consen 1443 SAEDFERLVRSS-----PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLK 1517 (1710)
T ss_pred             CHHHHHHHHhcC-----CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHH
Confidence            444555554432     33 35677888888899999999999999855          456888888888888888889


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--
Q 036263          148 EYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--  225 (305)
Q Consensus       148 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--  225 (305)
                      ++|++..+.  --....|..|...|.+.++.++|.++++.|.+.- .-...+|...+..+.+..+.+.|.+++++..+  
T Consensus      1518 kVFeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l 1594 (1710)
T KOG1070|consen 1518 KVFERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSL 1594 (1710)
T ss_pred             HHHHHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc
Confidence            999988763  2235678899999999999999999999998763 45678899999999999999999999998874  


Q ss_pred             ---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCC
Q 036263          226 ---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQ  298 (305)
Q Consensus       226 ---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~  298 (305)
                         ..+....-.+..-.+.|+.+.+..+|+..... .+--...|+..+..-.+.|+.+.++.+|++.. ..++.|.
T Consensus      1595 Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi-~l~l~~k 1668 (1710)
T KOG1070|consen 1595 PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVI-ELKLSIK 1668 (1710)
T ss_pred             chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHH-hcCCChh
Confidence               24555555566667889999999999998876 33356789999999999999999999999988 7777664

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.66  E-value=4.4e-06  Score=75.82  Aligned_cols=249  Identities=16%  Similarity=0.089  Sum_probs=172.9

Q ss_pred             CCCchHhHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCHh-----hHHHHHHhhc-CCCC---------------C
Q 036263           41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLY---GTNPSHI-----TFVTLLSGCA-DFPS---------------N   96 (305)
Q Consensus        41 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~-----~~~~ll~~~~-~~~~---------------~   96 (305)
                      ..+.+...|.+-......|++++|...|+.....   ...+|..     |...-+..|. ..++               |
T Consensus       448 ~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp  527 (1018)
T KOG2002|consen  448 KQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP  527 (1018)
T ss_pred             CCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc
Confidence            3367788888888899999999999999998865   2333432     1111111111 1111               2


Q ss_pred             ChhH-HHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHc-CCCCCHHHHHHHH
Q 036263           97 NVMV-STALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQIS-GVEPDYLTIISVL  169 (305)
Q Consensus        97 ~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll  169 (305)
                      +-.. |-.+.......+...+|...+....+     ...+..+...+.+...+..|.+-|...... ...+|..+...|-
T Consensus       528 ~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLG  607 (1018)
T KOG2002|consen  528 GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALG  607 (1018)
T ss_pred             hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhh
Confidence            2211 11111111122556667766666644     444665666777777777777766665443 2235666666665


Q ss_pred             HHhc------------CcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccC---chhhHHHH
Q 036263          170 NVCA------------NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR---TLVSWNSI  234 (305)
Q Consensus       170 ~~~~------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l  234 (305)
                      +.|.            ..+..+.|.++|.+..+.. +-|...-|-+.-+++..|++++|..+|.++.+.   +..+|-.+
T Consensus       608 N~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNl  686 (1018)
T KOG2002|consen  608 NVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNL  686 (1018)
T ss_pred             HHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeH
Confidence            5443            2345677899999888876 678888888999999999999999999999864   44789999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          235 IVGFAVNGFVGEALEYFNLMQK-GVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       235 i~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      .++|+..|+|..|+++|+...+ .+-.-+......|.+++.+.|++.+|.+.+....
T Consensus       687 ah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~  743 (1018)
T KOG2002|consen  687 AHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR  743 (1018)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            9999999999999999998544 4445577889999999999999999999888777

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.65  E-value=5e-08  Score=52.43  Aligned_cols=35  Identities=29%  Similarity=0.441  Sum_probs=33.1

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 036263           46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSH   80 (305)
Q Consensus        46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~   80 (305)
                      .+||.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            47999999999999999999999999999999983

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.64  E-value=1.5e-05  Score=63.72  Aligned_cols=59  Identities=12%  Similarity=0.081  Sum_probs=47.8

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 036263          233 SIIVGFAVNGFVGEALEYFNLMQKGVF--KTDEVSFTGALTACSHAGLIEDGLQYFDIMKK  291 (305)
Q Consensus       233 ~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  291 (305)
                      .+...+...|++++|...+++..+...  +.....+..+..++.+.|++++|..+++.+..
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            455668899999999999999887531  22356788899999999999999999998873

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.62  E-value=7.1e-08  Score=51.49  Aligned_cols=34  Identities=18%  Similarity=0.248  Sum_probs=32.4

Q ss_pred             hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 036263           45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNP   78 (305)
Q Consensus        45 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p   78 (305)
                      +.+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus         1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            3689999999999999999999999999999988

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.60  E-value=0.00011  Score=64.77  Aligned_cols=220  Identities=14%  Similarity=0.060  Sum_probs=146.0

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc----c
Q 036263           52 ISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG----C  127 (305)
Q Consensus        52 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~  127 (305)
                      ...+...|++++|++.++.-..  ..+|...+                 .......+.+.|+.++|..++..+.+    .
T Consensus        11 ~~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~-----------------~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn   71 (517)
T PF12569_consen   11 NSILEEAGDYEEALEHLEKNEK--QILDKLAV-----------------LEKRAELLLKLGRKEEAEKIYRELIDRNPDN   71 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHhhhh--hCCCHHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence            3456788999999999977544  45565544                 34445557788888888888877744    2


Q ss_pred             cc-HHHHHHHHHcC-----CChHHHHHHHHHHH----------------------------------HcCCCCCHHHHHH
Q 036263          128 DF-WTALLNGFVKR-----DYFEEALEYFRVMQ----------------------------------ISGVEPDYLTIIS  167 (305)
Q Consensus       128 ~~-~~~li~~~~~~-----g~~~~a~~~~~~m~----------------------------------~~g~~p~~~t~~~  167 (305)
                      .. |..+..+..-.     ...+...++++++.                                  .+|++   .+|+.
T Consensus        72 ~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~  148 (517)
T PF12569_consen   72 YDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSN  148 (517)
T ss_pred             HHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHH
Confidence            22 33333333111     23444455555543                                  33332   13444


Q ss_pred             HHHHhcCcCChhHHHHHHHHHhhc----C----------CCCCh--hHHHHHHHHHHhcCChHHHHHHHHhccc--Cc-h
Q 036263          168 VLNVCANVRTLGIGLWMHRYVPKQ----D----------FKDNV--RVCNTLMDVYSRFGCIEFARQVFQRMHK--RT-L  228 (305)
Q Consensus       168 ll~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-~  228 (305)
                      |-..|......+...+++......    +          -+|+.  .++.-+.+.|...|++++|.++.++..+  |+ +
T Consensus       149 lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~  228 (517)
T PF12569_consen  149 LKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLV  228 (517)
T ss_pred             HHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcH
Confidence            444444444445555555554322    1          13444  3456678889999999999999998875  44 4


Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCC
Q 036263          229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRV  295 (305)
Q Consensus       229 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  295 (305)
                      ..|..-.+.+-..|++++|.+.++..+.... -|...-+..+..+.++|++++|.+++.... ..+.
T Consensus       229 ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ft-r~~~  293 (517)
T PF12569_consen  229 ELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFT-REDV  293 (517)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhc-CCCC
Confidence            5677778889999999999999999998653 366777788889999999999999999887 4444

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.60  E-value=4.1e-05  Score=72.29  Aligned_cols=225  Identities=14%  Similarity=0.091  Sum_probs=175.6

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTRMRLY-GTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFD  122 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~  122 (305)
                      +...|-.-|......+++++|.+++++.... +.+-...-.               .+|.++++.-...|.-+...++|+
T Consensus      1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKL---------------NiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKL---------------NIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHH---------------HHHHHHHhHHHhhCcHHHHHHHHH
Confidence            3456888888899999999999999998864 222222222               345666666777788888999999


Q ss_pred             hcCc----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCC--C
Q 036263          123 VMRG----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD--N  196 (305)
Q Consensus       123 ~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~  196 (305)
                      ++..    ..+|..|...|.+.++.++|-++++.|.+. +.-....|...+..+.+..+-+.|..++.+..+.= +-  .
T Consensus      1522 RAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eH 1599 (1710)
T KOG1070|consen 1522 RACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEH 1599 (1710)
T ss_pred             HHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhh
Confidence            9865    456889999999999999999999999876 33567789999999999999999999999987752 22  3


Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhcccC---chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 036263          197 VRVCNTLMDVYSRFGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE--VSFTGALT  271 (305)
Q Consensus       197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~li~  271 (305)
                      .....-.++.-.+.|+.+.+..+|+.....   -.-.|+..|+.-.++|+.+.+..+|++....++.|-.  ..|...+.
T Consensus      1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred             HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH
Confidence            445566667777899999999999998742   4568999999999999999999999999999887754  45666665


Q ss_pred             HHhccCcHHHHHHH
Q 036263          272 ACSHAGLIEDGLQY  285 (305)
Q Consensus       272 ~~~~~g~~~~a~~~  285 (305)
                      .=-..|+-+.++.+
T Consensus      1680 yEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1680 YEKSHGDEKNVEYV 1693 (1710)
T ss_pred             HHHhcCchhhHHHH
Confidence            55555665544443

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.59  E-value=1e-07  Score=51.22  Aligned_cols=33  Identities=36%  Similarity=0.537  Sum_probs=26.8

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 036263          230 SWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD  262 (305)
Q Consensus       230 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~  262 (305)
                      +||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            678888888888888888888888888888776

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.56  E-value=7.3e-05  Score=67.63  Aligned_cols=183  Identities=13%  Similarity=0.135  Sum_probs=128.8

Q ss_pred             HHHHHhcCChHHHHHHHHhcCc-------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-----------------
Q 036263          105 LDMYAKFGRMDLATVVFDVMRG-------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-----------------  160 (305)
Q Consensus       105 l~~~~~~g~~~~a~~~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----------------  160 (305)
                      ++.+...++-+.|.+.++...+       ...++.++..+.+...++.|......+.....++                 
T Consensus       287 ~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~  366 (895)
T KOG2076|consen  287 AHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNA  366 (895)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccc
Confidence            3444445555666666655543       3347788888888888888887777776522222                 


Q ss_pred             ----------CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCC--CChhHHHHHHHHHHhcCChHHHHHHHHhccc---
Q 036263          161 ----------DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK--DNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---  225 (305)
Q Consensus       161 ----------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---  225 (305)
                                +..+ --++-++.+....+....+...+.+..+.  -++..|.-+..+|...|++.+|..+|..+..   
T Consensus       367 ~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~  445 (895)
T KOG2076|consen  367 LCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG  445 (895)
T ss_pred             cccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc
Confidence                      2222 12233344555555555566666666633  3567889999999999999999999999985   


Q ss_pred             -CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          226 -RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD-EVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       226 -~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                       .+...|-.+..+|...|.++.|.+.|+.....  .|+ ...--.|-..+.+.|+.++|.+.+..+.
T Consensus       446 ~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  446 YQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence             36778999999999999999999999999884  453 3444455666778999999999998765

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.56  E-value=1.4e-07  Score=50.37  Aligned_cols=33  Identities=24%  Similarity=0.337  Sum_probs=23.0

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 036263          229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT  261 (305)
Q Consensus       229 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  261 (305)
                      .+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            466777777777777777777777777776665

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.52  E-value=4.6e-06  Score=68.24  Aligned_cols=147  Identities=14%  Similarity=0.122  Sum_probs=108.0

Q ss_pred             HHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHH---HHHHHHHHhcC
Q 036263          135 NGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC---NTLMDVYSRFG  211 (305)
Q Consensus       135 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g  211 (305)
                      ..+...|++++|+++++.-      .+.......+..+.+.++++.|.+.++.|.+.+  .|....   .+.+..+.-..
T Consensus       110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l~qLa~awv~l~~g~e  181 (290)
T PF04733_consen  110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSILTQLAEAWVNLATGGE  181 (290)
T ss_dssp             HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhCch
Confidence            4566789999999888642      356677778889999999999999999998753  343322   23333333345


Q ss_pred             ChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcH-HHHHHHHH
Q 036263          212 CIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLI-EDGLQYFD  287 (305)
Q Consensus       212 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~  287 (305)
                      .+.+|.-+|+++.+   +++.+.+.+..++...|++++|.+++.+....+ +-+..++..++-+....|+. +.+.+++.
T Consensus       182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~  260 (290)
T PF04733_consen  182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS  260 (290)
T ss_dssp             CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence            79999999999985   467788888899999999999999999977654 23566777777777777877 67788888


Q ss_pred             HHH
Q 036263          288 IMK  290 (305)
Q Consensus       288 ~m~  290 (305)
                      ++.
T Consensus       261 qL~  263 (290)
T PF04733_consen  261 QLK  263 (290)
T ss_dssp             HCH
T ss_pred             HHH
Confidence            887

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.52  E-value=6.6e-05  Score=68.48  Aligned_cols=191  Identities=13%  Similarity=0.103  Sum_probs=139.1

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHhcCc--------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHH--H
Q 036263           96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRG--------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT--I  165 (305)
Q Consensus        96 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t--~  165 (305)
                      .++.+.+.|.+-|.-.|+++.++.+.+.+..        ...|--+.++|-..|++++|..+|-+-.+  ..|+..+  +
T Consensus       268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k--~~~d~~~l~~  345 (1018)
T KOG2002|consen  268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK--ADNDNFVLPL  345 (1018)
T ss_pred             CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc--cCCCCccccc
Confidence            5667777788888888888888888877743        44577788888889999999998866554  3455433  3


Q ss_pred             HHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC----ChHHHHHHHHhcccC---chhhHHHHHHHH
Q 036263          166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG----CIEFARQVFQRMHKR---TLVSWNSIIVGF  238 (305)
Q Consensus       166 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~~~~~---~~~~~~~li~~~  238 (305)
                      .-|...+.+.|+.+.+...|+.+.+.. +.+..+...|...|...+    ..++|..++.+..++   |...|-.+...+
T Consensus       346 ~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~  424 (1018)
T KOG2002|consen  346 VGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL  424 (1018)
T ss_pred             cchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            456777888899999999998888774 555667777777777664    457777777777654   445555555544


Q ss_pred             HhcCChHHHHHHHHH----HHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          239 AVNGFVGEALEYFNL----MQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       239 ~~~g~~~~a~~~~~~----m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      -. ++...++.+|..    +...+-.+.....|.+..-+...|+++.|...|+...
T Consensus       425 e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~  479 (1018)
T KOG2002|consen  425 EQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSAL  479 (1018)
T ss_pred             Hh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHh
Confidence            43 445444666655    3455555778889999999999999999999999887

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.52  E-value=0.00018  Score=63.18  Aligned_cols=185  Identities=10%  Similarity=-0.073  Sum_probs=102.9

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 036263           99 MVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCA  173 (305)
Q Consensus        99 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~  173 (305)
                      .+|..-...|.+.+.++-|..+|.....     ...|......=-..|..++...+|++.... ++-....|......+-
T Consensus       517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w  595 (913)
T KOG0495|consen  517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKW  595 (913)
T ss_pred             hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHH
Confidence            3455555556666666666666655533     333555555555556666666666666554 1112333344444455


Q ss_pred             CcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc--cCchhhHHHHHHHHHhcCChHHHHHHH
Q 036263          174 NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH--KRTLVSWNSIIVGFAVNGFVGEALEYF  251 (305)
Q Consensus       174 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~  251 (305)
                      ..|++..|..++....+.. +.+...|-..++.......++.|..+|.+..  .++...|.--+..-.-.++.++|.+++
T Consensus       596 ~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rll  674 (913)
T KOG0495|consen  596 KAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLL  674 (913)
T ss_pred             hcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHH
Confidence            5667777777766666654 3456666666666666666777777776665  245555555555555556666666666


Q ss_pred             HHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHH
Q 036263          252 NLMQKGVFKTDE-VSFTGALTACSHAGLIEDGLQYFD  287 (305)
Q Consensus       252 ~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~  287 (305)
                      ++..+.  -|+. ..|..+-+.+...++++.|.+.|.
T Consensus       675 Ee~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~  709 (913)
T KOG0495|consen  675 EEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYL  709 (913)
T ss_pred             HHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            665553  2333 334444444555555555554443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.50  E-value=0.0002  Score=62.90  Aligned_cols=242  Identities=11%  Similarity=0.005  Sum_probs=161.3

Q ss_pred             hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC---------------CChhHHHHHHHHHH
Q 036263           45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------------NNVMVSTALLDMYA  109 (305)
Q Consensus        45 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------------~~~~~~~~ll~~~~  109 (305)
                      ...|-....-....|++..|..++.+.-+.. +-+...|-..++.-.....               |+..+|..-+..-.
T Consensus       584 e~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er  662 (913)
T KOG0495|consen  584 EILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLER  662 (913)
T ss_pred             hhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHH
Confidence            3344444455555566666666666555431 1133333333333332222               55555555555566


Q ss_pred             hcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHH
Q 036263          110 KFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWM  184 (305)
Q Consensus       110 ~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~  184 (305)
                      -.+..++|.+++++..+     .-.|-.+...+-+.++++.|...|..-.+. .+-....|..+...=-+.|++-.|..+
T Consensus       663 ~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~i  741 (913)
T KOG0495|consen  663 YLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSI  741 (913)
T ss_pred             HhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHH
Confidence            66777777777766644     223555566666677777776666543332 222455666776666778889999999


Q ss_pred             HHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---------------------------------CchhhH
Q 036263          185 HRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---------------------------------RTLVSW  231 (305)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---------------------------------~~~~~~  231 (305)
                      ++.....+ +-+...|-..|++-.+.|..+.|..++.+..+                                 .|....
T Consensus       742 ldrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVl  820 (913)
T KOG0495|consen  742 LDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVL  820 (913)
T ss_pred             HHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhH
Confidence            99988776 67888999999999999999998887665531                                 144455


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          232 NSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       232 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      -.+...|-...++++|.++|.+..+.+ +-+..+|..+...+.+.|.-+.-.+++....
T Consensus       821 laia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~  878 (913)
T KOG0495|consen  821 LAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCE  878 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            566677778889999999999998854 2244788888889999998888888888776

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=3.5e-05  Score=66.21  Aligned_cols=209  Identities=16%  Similarity=0.102  Sum_probs=154.2

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDV  123 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~  123 (305)
                      .+.+|-++--.|.-.|+.++|.+.|.+...  +.|                 .-...|-...++|+-.|.-|.|...+..
T Consensus       311 ~a~sW~aVg~YYl~i~k~seARry~SKat~--lD~-----------------~fgpaWl~fghsfa~e~EhdQAmaaY~t  371 (611)
T KOG1173|consen  311 KALSWFAVGCYYLMIGKYSEARRYFSKATT--LDP-----------------TFGPAWLAFGHSFAGEGEHDQAMAAYFT  371 (611)
T ss_pred             CCcchhhHHHHHHHhcCcHHHHHHHHHHhh--cCc-----------------cccHHHHHHhHHhhhcchHHHHHHHHHH
Confidence            344555555555555555666665555432  111                 1234577788889999999999988876


Q ss_pred             cCc--c---ccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhc--CC--
Q 036263          124 MRG--C---DFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQ--DF--  193 (305)
Q Consensus       124 ~~~--~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~--  193 (305)
                      .-.  .   ..+--+.--|.+.+..+.|.+.|.+...  +-| |....+.+--.....+.+.+|...|+.....  .+  
T Consensus       372 Aarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~  449 (611)
T KOG1173|consen  372 AARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN  449 (611)
T ss_pred             HHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc
Confidence            644  2   2234445568889999999999987654  566 5677777777778899999999999877621  01  


Q ss_pred             --CCChhHHHHHHHHHHhcCChHHHHHHHHhcc---cCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 036263          194 --KDNVRVCNTLMDVYSRFGCIEFARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG  268 (305)
Q Consensus       194 --~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~  268 (305)
                        .--..+++.|..+|.+.+++++|...+++..   ..+..++.++.-.|...|+++.|.+.|.+...  +.||..+-..
T Consensus       450 e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~  527 (611)
T KOG1173|consen  450 EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISE  527 (611)
T ss_pred             cccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHH
Confidence              1123468899999999999999999999876   45889999999999999999999999999776  7899888777


Q ss_pred             HHHHHhc
Q 036263          269 ALTACSH  275 (305)
Q Consensus       269 li~~~~~  275 (305)
                      ++..+..
T Consensus       528 lL~~aie  534 (611)
T KOG1173|consen  528 LLKLAIE  534 (611)
T ss_pred             HHHHHHH
Confidence            7775543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.48  E-value=4.6e-05  Score=58.90  Aligned_cols=154  Identities=8%  Similarity=0.002  Sum_probs=113.2

Q ss_pred             HHHHHHhcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHH
Q 036263          104 LLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLW  183 (305)
Q Consensus       104 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~  183 (305)
                      -+..|.+.|+++.+....+.+.+..      ..+...++.+++...++...+.. +.+...|..+...|...|++++|..
T Consensus        22 ~~~~Y~~~g~~~~v~~~~~~~~~~~------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~   94 (198)
T PRK10370         22 CVGSYLLSPKWQAVRAEYQRLADPL------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALL   94 (198)
T ss_pred             HHHHHHHcchHHHHHHHHHHHhCcc------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            4456888899888765543322110      12223566777777777665542 4478888999999999999999999


Q ss_pred             HHHHHhhcCCCCChhHHHHHHHHH-HhcCC--hHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263          184 MHRYVPKQDFKDNVRVCNTLMDVY-SRFGC--IEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG  257 (305)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  257 (305)
                      .++...+.. +.+...+..+..++ ...|+  .++|.+++++..+  | +...+..+...+...|++++|...|+++.+.
T Consensus        95 a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l  173 (198)
T PRK10370         95 AYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL  173 (198)
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            999998876 56778888888764 67677  5899999999874  3 6678888888999999999999999998886


Q ss_pred             CCCCCHHHH
Q 036263          258 VFKTDEVSF  266 (305)
Q Consensus       258 g~~p~~~~~  266 (305)
                      . +|+..-+
T Consensus       174 ~-~~~~~r~  181 (198)
T PRK10370        174 N-SPRVNRT  181 (198)
T ss_pred             C-CCCccHH
Confidence            3 4555444

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.47  E-value=6.9e-05  Score=68.54  Aligned_cols=128  Identities=13%  Similarity=0.078  Sum_probs=77.8

Q ss_pred             cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHH
Q 036263          127 CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD-YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD  205 (305)
Q Consensus       127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  205 (305)
                      ...+-.|.....+.|++++|..+++...+  +.|+ ......+...+.+.+++++|....++..... +-+......+..
T Consensus        86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~  162 (694)
T PRK15179         86 ELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAK  162 (694)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence            44555666666666666666666666555  3554 3445555666666666666666666666654 444555566666


Q ss_pred             HHHhcCChHHHHHHHHhcccC---chhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263          206 VYSRFGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG  257 (305)
Q Consensus       206 ~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  257 (305)
                      ++.+.|++++|..+|+++..+   +..++..+..++-..|+.++|...|++..+.
T Consensus       163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~  217 (694)
T PRK15179        163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA  217 (694)
T ss_pred             HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            666666666666666666632   2455666666666666666666666665543

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.46  E-value=0.00045  Score=58.59  Aligned_cols=98  Identities=9%  Similarity=0.132  Sum_probs=59.0

Q ss_pred             CCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHH
Q 036263          193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV-FKTDEVSFTG  268 (305)
Q Consensus       193 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~  268 (305)
                      ..|-..++..-|..-.+.+.++.+..++++..+  | +..+|......-...|+.+.|..+|.-..++. .......|..
T Consensus       433 ~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwka  512 (677)
T KOG1915|consen  433 KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKA  512 (677)
T ss_pred             cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHH
Confidence            345555565556555666666666666666653  2 44566666666666777777777777766642 1112233444


Q ss_pred             HHHHHhccCcHHHHHHHHHHHH
Q 036263          269 ALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       269 li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      .|.--...|.++.|..+++.+.
T Consensus       513 YIdFEi~~~E~ekaR~LYerlL  534 (677)
T KOG1915|consen  513 YIDFEIEEGEFEKARALYERLL  534 (677)
T ss_pred             hhhhhhhcchHHHHHHHHHHHH
Confidence            4444456677777777777776

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.44  E-value=1.9e-05  Score=69.73  Aligned_cols=208  Identities=11%  Similarity=0.043  Sum_probs=127.7

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc---
Q 036263           50 SSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG---  126 (305)
Q Consensus        50 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---  126 (305)
                      .+.+.+...|-..+|+.+|++..-                           |.-++.+|+..|+..+|..+..+..+   
T Consensus       403 ~laell~slGitksAl~I~Erlem---------------------------w~~vi~CY~~lg~~~kaeei~~q~lek~~  455 (777)
T KOG1128|consen  403 LLAELLLSLGITKSALVIFERLEM---------------------------WDPVILCYLLLGQHGKAEEINRQELEKDP  455 (777)
T ss_pred             HHHHHHHHcchHHHHHHHHHhHHH---------------------------HHHHHHHHHHhcccchHHHHHHHHhcCCC
Confidence            344566666777777777776532                           34444455556655555555544322   


Q ss_pred             -cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHH
Q 036263          127 -CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD  205 (305)
Q Consensus       127 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  205 (305)
                       ...|..+........-++.|.++.+....+       .-..+-....+.++++++.+.|+.-.+.. +....+|-....
T Consensus       456 d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~  527 (777)
T KOG1128|consen  456 DPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGC  527 (777)
T ss_pred             cchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccH
Confidence             333555555544444455555555543221       11111111223566666666666555543 445667777777


Q ss_pred             HHHhcCChHHHHHHHHhcc--cC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 036263          206 VYSRFGCIEFARQVFQRMH--KR-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG  282 (305)
Q Consensus       206 ~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a  282 (305)
                      +..+.++++.|.+.|....  +| +...||.+-.+|.+.++-.+|...+++..+.+ .-+...|...+..-.+.|.+++|
T Consensus       528 ~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda  606 (777)
T KOG1128|consen  528 AALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDA  606 (777)
T ss_pred             HHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHH
Confidence            7777888888888877766  34 45778888888888888888888888887776 34456666666667778888888


Q ss_pred             HHHHHHHHHHh
Q 036263          283 LQYFDIMKKIY  293 (305)
Q Consensus       283 ~~~~~~m~~~~  293 (305)
                      .+.+..+....
T Consensus       607 ~~A~~rll~~~  617 (777)
T KOG1128|consen  607 IKAYHRLLDLR  617 (777)
T ss_pred             HHHHHHHHHhh
Confidence            88888776433

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.44  E-value=0.00041  Score=59.00  Aligned_cols=236  Identities=8%  Similarity=-0.067  Sum_probs=140.5

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCCH-hhHHH---HHHhhcCCCC---------------CC-hhHHHHHHHHHHhcC
Q 036263           53 SRHCRSGCILEAALEFTRMRLYGTNPSH-ITFVT---LLSGCADFPS---------------NN-VMVSTALLDMYAKFG  112 (305)
Q Consensus        53 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~---ll~~~~~~~~---------------~~-~~~~~~ll~~~~~~g  112 (305)
                      ..+...|++++|.+.+++..+.  .|+. ..+..   ........+.               |+ ......+...+...|
T Consensus        51 ~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G  128 (355)
T cd05804          51 LSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAG  128 (355)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcC
Confidence            3456789999999999998874  3433 23221   1110000111               22 233445566778889


Q ss_pred             ChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHhcCcCChhHHHHH
Q 036263          113 RMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGV-EPDY--LTIISVLNVCANVRTLGIGLWM  184 (305)
Q Consensus       113 ~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~--~t~~~ll~~~~~~~~~~~a~~~  184 (305)
                      ++++|...+++...     ...+..+...+...|++++|...+++.....- .|+.  ..|..+...+...|+.++|..+
T Consensus       129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~  208 (355)
T cd05804         129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI  208 (355)
T ss_pred             CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence            99999998888754     44567788888899999999999888765421 2232  3455677788899999999999


Q ss_pred             HHHHhhcCC-CCChhHH-H--HHHHHHHhcCChHHHHHH--H-Hhccc--C-chhhH--HHHHHHHHhcCChHHHHHHHH
Q 036263          185 HRYVPKQDF-KDNVRVC-N--TLMDVYSRFGCIEFARQV--F-QRMHK--R-TLVSW--NSIIVGFAVNGFVGEALEYFN  252 (305)
Q Consensus       185 ~~~~~~~~~-~~~~~~~-~--~li~~~~~~g~~~~a~~~--~-~~~~~--~-~~~~~--~~li~~~~~~g~~~~a~~~~~  252 (305)
                      +++...... .+..... +  .++.-+...|..+.+.+.  . .....  + ....+  .....++...|+.+.|..+++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~  288 (355)
T cd05804         209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA  288 (355)
T ss_pred             HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            988754432 1222111 1  223333344433332222  1 11111  1 11122  245677788899999999998


Q ss_pred             HHHHCCCC------CCHHHHHHHHH--HHhccCcHHHHHHHHHHHH
Q 036263          253 LMQKGVFK------TDEVSFTGALT--ACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       253 ~m~~~g~~------p~~~~~~~li~--~~~~~g~~~~a~~~~~~m~  290 (305)
                      .+......      ....+-..++.  ++...|++++|.+.+....
T Consensus       289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al  334 (355)
T cd05804         289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVR  334 (355)
T ss_pred             HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            88663221      01112222333  4457899999999988876

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.43  E-value=0.00019  Score=62.87  Aligned_cols=116  Identities=10%  Similarity=0.092  Sum_probs=59.5

Q ss_pred             cCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc----Cch-hhHHHHHHHHHh---cCCh
Q 036263          173 ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK----RTL-VSWNSIIVGFAV---NGFV  244 (305)
Q Consensus       173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~~li~~~~~---~g~~  244 (305)
                      -..|-++....+++.+.+..+.....+-| ....+-...-++++.++|++-..    |++ ..|+..+.-+.+   ....
T Consensus       488 Es~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~kl  566 (835)
T KOG2047|consen  488 ESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKL  566 (835)
T ss_pred             HHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCH
Confidence            33444555555555555544322111111 11112233335555555555442    333 356666665554   3468


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHH--HHHhccCcHHHHHHHHHHHH
Q 036263          245 GEALEYFNLMQKGVFKTDEVSFTGAL--TACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       245 ~~a~~~~~~m~~~g~~p~~~~~~~li--~~~~~~g~~~~a~~~~~~m~  290 (305)
                      +.|..+|++..+ |++|...-+--|+  .-=.+.|-...|+++++...
T Consensus       567 EraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat  613 (835)
T KOG2047|consen  567 ERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT  613 (835)
T ss_pred             HHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            889999999888 6766543222222  12224577777888887753

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.39  E-value=0.00015  Score=61.68  Aligned_cols=89  Identities=10%  Similarity=0.064  Sum_probs=49.3

Q ss_pred             HHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc-----Cch--hhHHHHHHHHH
Q 036263          167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK-----RTL--VSWNSIIVGFA  239 (305)
Q Consensus       167 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~--~~~~~li~~~~  239 (305)
                      .+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...+++..+     ++.  ..|..+...+.
T Consensus       119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~  197 (355)
T cd05804         119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL  197 (355)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence            44445556666666666666665554 33445555566666666666666666665542     111  22334555566


Q ss_pred             hcCChHHHHHHHHHHHH
Q 036263          240 VNGFVGEALEYFNLMQK  256 (305)
Q Consensus       240 ~~g~~~~a~~~~~~m~~  256 (305)
                      ..|++++|..++++...
T Consensus       198 ~~G~~~~A~~~~~~~~~  214 (355)
T cd05804         198 ERGDYEAALAIYDTHIA  214 (355)
T ss_pred             HCCCHHHHHHHHHHHhc
Confidence            66666666666666543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=0.00032  Score=58.45  Aligned_cols=224  Identities=12%  Similarity=0.071  Sum_probs=125.2

Q ss_pred             CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 036263           43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFD  122 (305)
Q Consensus        43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~  122 (305)
                      -|+.....+-+.+...|+.++|+..|++...  +.|+..+-              ...|.   ..+.+.|+.+....+..
T Consensus       230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~--------------MD~Ya---~LL~~eg~~e~~~~L~~  290 (564)
T KOG1174|consen  230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEA--------------MDLYA---VLLGQEGGCEQDSALMD  290 (564)
T ss_pred             ccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhh--------------HHHHH---HHHHhccCHhhHHHHHH
Confidence            4666777788888888888888888888765  33332111              01111   11234444444444443


Q ss_pred             hcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC
Q 036263          123 VMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN  196 (305)
Q Consensus       123 ~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  196 (305)
                      .+-.     ...|..-.......++++.|+.+-++-.+.  .| +...|-.=-..+...++.++|.-.|+...... +.+
T Consensus       291 ~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~r  367 (564)
T KOG1174|consen  291 YLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYR  367 (564)
T ss_pred             HHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--CcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhh
Confidence            3322     112333333333344444444444433321  22 12222222223344455555555555444432 334


Q ss_pred             hhHHHHHHHHHHhcCChHH------------------------------------HHHHHHhccc--Cc-hhhHHHHHHH
Q 036263          197 VRVCNTLMDVYSRFGCIEF------------------------------------ARQVFQRMHK--RT-LVSWNSIIVG  237 (305)
Q Consensus       197 ~~~~~~li~~~~~~g~~~~------------------------------------a~~~~~~~~~--~~-~~~~~~li~~  237 (305)
                      ...|..|+.+|...|++.+                                    |.++++.-.+  |+ ....+.+...
T Consensus       368 L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL  447 (564)
T KOG1174|consen  368 LEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAEL  447 (564)
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHH
Confidence            4555555555555555544                                    4444443332  22 2355667777


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          238 FAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       238 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      +...|..+.+..++++-..  ..||....+.|.+.+.....+.+|.+.|....
T Consensus       448 ~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL  498 (564)
T KOG1174|consen  448 CQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL  498 (564)
T ss_pred             HHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            8889999999999999877  56899999999999988888888888887665

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.35  E-value=6.1e-05  Score=58.23  Aligned_cols=143  Identities=7%  Similarity=0.023  Sum_probs=111.6

Q ss_pred             HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh
Q 036263          134 LNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI  213 (305)
Q Consensus       134 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  213 (305)
                      +..|...|+++.+....+.+.    .|.        ..+...++.+++...++...+.. +.+...|..+...|...|++
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~----~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~   89 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLA----DPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY   89 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHh----Ccc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence            456888899888754443221    111        12223667778888888887776 77899999999999999999


Q ss_pred             HHHHHHHHhccc--C-chhhHHHHHHHH-HhcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 036263          214 EFARQVFQRMHK--R-TLVSWNSIIVGF-AVNGF--VGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFD  287 (305)
Q Consensus       214 ~~a~~~~~~~~~--~-~~~~~~~li~~~-~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~  287 (305)
                      ++|...|++..+  | +...+..+..++ ...|+  .++|.+++++..+.+. -+...+..+...+.+.|++++|+..|+
T Consensus        90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~~~  168 (198)
T PRK10370         90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDAFMQADYAQAIELWQ  168 (198)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999999999874  3 677788887764 67777  5999999999999642 266788888889999999999999999


Q ss_pred             HHH
Q 036263          288 IMK  290 (305)
Q Consensus       288 ~m~  290 (305)
                      .+.
T Consensus       169 ~aL  171 (198)
T PRK10370        169 KVL  171 (198)
T ss_pred             HHH
Confidence            997

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.35  E-value=0.00017  Score=67.06  Aligned_cols=218  Identities=6%  Similarity=-0.051  Sum_probs=145.9

Q ss_pred             cCCCCCCchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHh-hcCCCCCChhHHHHHHHHHHhcCChH
Q 036263           37 NSKSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSG-CADFPSNNVMVSTALLDMYAKFGRMD  115 (305)
Q Consensus        37 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~~~~~~ll~~~~~~g~~~  115 (305)
                      .......+...|..|+..+...+++++|.++.+...+  ..|+...+-..... +.+.++.+-...-.+++...+..++.
T Consensus        23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~  100 (906)
T PRK14720         23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWA  100 (906)
T ss_pred             cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchh
Confidence            3444556888999999999999999999999997666  45654443333222 22333322222225666666666665


Q ss_pred             HHHHHHHhcCc----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhc
Q 036263          116 LATVVFDVMRG----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ  191 (305)
Q Consensus       116 ~a~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~  191 (305)
                      .+..+.+.+.+    ...+..+..+|-+.|+.++|.++|+++.+.. .-|....|.+...|... ++++|.+++.+.++.
T Consensus       101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~  178 (906)
T PRK14720        101 IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR  178 (906)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence            55555555544    3456678888888899999999999888765 33677788888888888 888888888877654


Q ss_pred             CCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc-----------------------CchhhHHHHHHHHHhcCChHHHH
Q 036263          192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK-----------------------RTLVSWNSIIVGFAVNGFVGEAL  248 (305)
Q Consensus       192 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~a~  248 (305)
                                     |...+++.++.++|.++..                       .-+.++-.+...|-..++|+++.
T Consensus       179 ---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i  243 (906)
T PRK14720        179 ---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVI  243 (906)
T ss_pred             ---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHH
Confidence                           3333344444444444331                       23445666677788888999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHh
Q 036263          249 EYFNLMQKGVFKTDEVSFTGALTACS  274 (305)
Q Consensus       249 ~~~~~m~~~g~~p~~~~~~~li~~~~  274 (305)
                      .+++...+.. +-|.....-++.+|.
T Consensus       244 ~iLK~iL~~~-~~n~~a~~~l~~~y~  268 (906)
T PRK14720        244 YILKKILEHD-NKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHHHHhcC-CcchhhHHHHHHHHH
Confidence            9999998864 235566777777765

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.33  E-value=6.9e-05  Score=63.48  Aligned_cols=201  Identities=11%  Similarity=0.040  Sum_probs=138.9

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc-
Q 036263           48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG-  126 (305)
Q Consensus        48 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-  126 (305)
                      |--+-..|....+.++.+..|+...+-  .|                 -++.+|..-.....-.+++++|..=|+...+ 
T Consensus       363 yI~~a~~y~d~~~~~~~~~~F~~A~~l--dp-----------------~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L  423 (606)
T KOG0547|consen  363 YIKRAAAYADENQSEKMWKDFNKAEDL--DP-----------------ENPDVYYHRGQMRFLLQQYEEAIADFQKAISL  423 (606)
T ss_pred             HHHHHHHHhhhhccHHHHHHHHHHHhc--CC-----------------CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            444444555566666666666655542  22                 2333444444445556788999999988865 


Q ss_pred             ----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCC-----CC-
Q 036263          127 ----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK-----DN-  196 (305)
Q Consensus       127 ----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~-  196 (305)
                          ...|-.+--+.-+.+++++++..|++.+++ ++-....|+.....+...++++.|.+.|+..++..-.     .+ 
T Consensus       424 ~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~  502 (606)
T KOG0547|consen  424 DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNA  502 (606)
T ss_pred             ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccc
Confidence                344555666667888999999999998775 5556788999999999999999999999988765311     12 


Q ss_pred             -hhHHHHHHHHHHhcCChHHHHHHHHhcccCc---hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036263          197 -VRVCNTLMDVYSRFGCIEFARQVFQRMHKRT---LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA  272 (305)
Q Consensus       197 -~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  272 (305)
                       +.+.-.++..--+ +++..|..++.+..+-|   ...|..|...-.+.|+.++|+++|++-...     ..|-.-++++
T Consensus       503 ~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l-----Art~~E~~~a  576 (606)
T KOG0547|consen  503 APLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL-----ARTESEMVHA  576 (606)
T ss_pred             hhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----HHhHHHHHHH
Confidence             2222233332233 88999999999988644   467899999999999999999999986542     2444455555


Q ss_pred             Hh
Q 036263          273 CS  274 (305)
Q Consensus       273 ~~  274 (305)
                      |.
T Consensus       577 ~s  578 (606)
T KOG0547|consen  577 YS  578 (606)
T ss_pred             HH
Confidence            43

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.33  E-value=6.9e-07  Score=46.41  Aligned_cols=31  Identities=39%  Similarity=0.476  Sum_probs=29.1

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 036263           46 VQWTSSISRHCRSGCILEAALEFTRMRLYGT   76 (305)
Q Consensus        46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~   76 (305)
                      ++||.+|++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            4899999999999999999999999999874

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.31  E-value=0.0001  Score=58.82  Aligned_cols=180  Identities=14%  Similarity=0.017  Sum_probs=116.5

Q ss_pred             CCchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036263           42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVF  121 (305)
Q Consensus        42 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~  121 (305)
                      ......+-.....+.+.|++++|...|++....  .|+....              ...+..+..++.+.|++++|...+
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~--------------~~a~~~la~~~~~~~~~~~A~~~~   93 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYA--------------EQAQLDLAYAYYKSGDYAEAIAAA   93 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhH--------------HHHHHHHHHHHHhcCCHHHHHHHH
Confidence            346667778888899999999999999998763  3432111              122344566678889999999999


Q ss_pred             HhcCc-----cc---cHHHHHHHHHcC--------CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCcCChhHHHHH
Q 036263          122 DVMRG-----CD---FWTALLNGFVKR--------DYFEEALEYFRVMQISGVEPDY-LTIISVLNVCANVRTLGIGLWM  184 (305)
Q Consensus       122 ~~~~~-----~~---~~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~  184 (305)
                      +.+.+     ..   .+..+..++...        |+.++|.+.|+.....  .|+. .....+.... .         .
T Consensus        94 ~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---------~  161 (235)
T TIGR03302        94 DRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---------L  161 (235)
T ss_pred             HHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---------H
Confidence            88743     11   244444444443        6677778887777654  3432 1221111100 0         0


Q ss_pred             HHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C----chhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263          185 HRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R----TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG  257 (305)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  257 (305)
                      ....        ......+...|.+.|++++|...+++..+  |    ....+..+..++...|++++|..+++.+...
T Consensus       162 ~~~~--------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       162 RNRL--------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHH--------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            0000        01122456678899999999999998863  2    2467889999999999999999999888764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.28  E-value=0.00034  Score=64.13  Aligned_cols=181  Identities=13%  Similarity=0.023  Sum_probs=135.8

Q ss_pred             HHHHHHHHHhcCChHHH-HHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChh
Q 036263          101 STALLDMYAKFGRMDLA-TVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLG  179 (305)
Q Consensus       101 ~~~ll~~~~~~g~~~~a-~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~  179 (305)
                      .+.+=.+.+..|.-++| .+++++..+      ++....+.....+++.-..... +....+...+..|.......|..+
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~La~i~~~~g~~~  103 (694)
T PRK15179         31 LDLLEAALAEPGESEEAGRELLQQARQ------VLERHAAVHKPAAALPELLDYV-RRYPHTELFQVLVARALEAAHRSD  103 (694)
T ss_pred             HhHHHHHhcCcccchhHHHHHHHHHHH------HHHHhhhhcchHhhHHHHHHHH-HhccccHHHHHHHHHHHHHcCCcH
Confidence            33444456666776665 455555432      3333333333333332222222 224556888999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263          180 IGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQK  256 (305)
Q Consensus       180 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  256 (305)
                      +|..+++...+.. +-+......+...+.+.+++++|....++...  | +......+..++...|++++|.++|++...
T Consensus       104 ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~  182 (694)
T PRK15179        104 EGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSR  182 (694)
T ss_pred             HHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence            9999999999874 45577788899999999999999999999985  3 556777788889999999999999999998


Q ss_pred             CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          257 GVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       257 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      .+ +-+..++..+-.++-+.|+.++|...|+...
T Consensus       183 ~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~  215 (694)
T PRK15179        183 QH-PEFENGYVGWAQSLTRRGALWRARDVLQAGL  215 (694)
T ss_pred             cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            43 2347888899999999999999999999886

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.28  E-value=0.0003  Score=55.02  Aligned_cols=150  Identities=11%  Similarity=0.048  Sum_probs=81.3

Q ss_pred             HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh
Q 036263          134 LNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI  213 (305)
Q Consensus       134 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  213 (305)
                      -..+...|+-+....+....... ..-|............+.|++..|...+++..... ++|...|+.+.-+|.+.|++
T Consensus        73 a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~  150 (257)
T COG5010          73 ATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRF  150 (257)
T ss_pred             HHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccCh
Confidence            33444445555544444432211 11133334445556666666666666666665554 55666666666666666666


Q ss_pred             HHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 036263          214 EFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYF  286 (305)
Q Consensus       214 ~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~  286 (305)
                      ++|..-|.+..+   .+....|.+.-.+.-.|+.+.|..++......+. -|...-..+.......|++++|..+-
T Consensus       151 ~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         151 DEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             hHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhc
Confidence            666666665553   2445556666666666666666666666555432 13444444555555666666665543

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.27  E-value=3.4e-05  Score=56.43  Aligned_cols=109  Identities=11%  Similarity=0.012  Sum_probs=77.2

Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--
Q 036263          148 EYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--  225 (305)
Q Consensus       148 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--  225 (305)
                      .++++..+  +.|+.  +.....++...|++++|...|+...... +.+...|..+..++.+.|++++|...|++...  
T Consensus        14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~   88 (144)
T PRK15359         14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD   88 (144)
T ss_pred             HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            34444433  34443  4445666777888888888888877765 55677778888888888888888888888774  


Q ss_pred             -CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 036263          226 -RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE  263 (305)
Q Consensus       226 -~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~  263 (305)
                       .+...+..+..++...|++++|...|+...+.  .|+.
T Consensus        89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~  125 (144)
T PRK15359         89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYAD  125 (144)
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence             25577777778888888888888888887773  4544

>PLN02789 farnesyltranstransferase

Probab=98.25  E-value=0.0018  Score=53.93  Aligned_cols=222  Identities=10%  Similarity=-0.076  Sum_probs=154.2

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhc
Q 036263           46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFG-RMDLATVVFDVM  124 (305)
Q Consensus        46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~  124 (305)
                      .+++.+-..+...++.++|+.+++++.+  +.|+..+.                 |+..-.++.+.| ++++++..++.+
T Consensus        38 ~a~~~~ra~l~~~e~serAL~lt~~aI~--lnP~~yta-----------------W~~R~~iL~~L~~~l~eeL~~~~~~   98 (320)
T PLN02789         38 EAMDYFRAVYASDERSPRALDLTADVIR--LNPGNYTV-----------------WHFRRLCLEALDADLEEELDFAEDV   98 (320)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHH--HCchhHHH-----------------HHHHHHHHHHcchhHHHHHHHHHHH
Confidence            3566666777778899999999999886  45554322                 333334455556 578899888877


Q ss_pred             Cc-----cccHHHHHHHHHcCCCh--HHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC
Q 036263          125 RG-----CDFWTALLNGFVKRDYF--EEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN  196 (305)
Q Consensus       125 ~~-----~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  196 (305)
                      ..     ..+|+.-...+.+.|+.  ++++.+++.+.+.  .| +..+|+....++...|+++++.+.++++++.+ +-+
T Consensus        99 i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N  175 (320)
T PLN02789         99 AEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRN  175 (320)
T ss_pred             HHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCc
Confidence            43     34566555555566653  6788888888764  44 67888888888888999999999999999987 456


Q ss_pred             hhHHHHHHHHHHhc---CCh----HHHHHHHHhcc--cC-chhhHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCC
Q 036263          197 VRVCNTLMDVYSRF---GCI----EFARQVFQRMH--KR-TLVSWNSIIVGFAVN----GFVGEALEYFNLMQKGVFKTD  262 (305)
Q Consensus       197 ~~~~~~li~~~~~~---g~~----~~a~~~~~~~~--~~-~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~p~  262 (305)
                      ...|+.....+.+.   |..    +++.....++.  .| |...|+-+...+...    ++..+|.+++.+....+ ..+
T Consensus       176 ~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s  254 (320)
T PLN02789        176 NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNH  254 (320)
T ss_pred             hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCc
Confidence            66777666555544   222    35566654544  23 677888888888773    44567888888876643 346


Q ss_pred             HHHHHHHHHHHhccC------------------cHHHHHHHHHHHH
Q 036263          263 EVSFTGALTACSHAG------------------LIEDGLQYFDIMK  290 (305)
Q Consensus       263 ~~~~~~li~~~~~~g------------------~~~~a~~~~~~m~  290 (305)
                      ...+..|+..|+...                  ..++|.++++.+.
T Consensus       255 ~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~  300 (320)
T PLN02789        255 VFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE  300 (320)
T ss_pred             HHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence            678888888887632                  3467888888774

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.25  E-value=2.1e-05  Score=67.05  Aligned_cols=121  Identities=12%  Similarity=0.031  Sum_probs=100.9

Q ss_pred             hcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc--------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC
Q 036263           90 CADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG--------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD  161 (305)
Q Consensus        90 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~  161 (305)
                      +.+.+..+......+++.+....+++.+..++.+.+.        ..+..++|+.|.+.|..+.++.+++.=...|+-||
T Consensus        58 ~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D  137 (429)
T PF10037_consen   58 FERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPD  137 (429)
T ss_pred             HhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCC
Confidence            3333334445556666667777888999998887754        55678999999999999999999999889999999


Q ss_pred             HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc
Q 036263          162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF  210 (305)
Q Consensus       162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  210 (305)
                      ..|++.||+.+.+.|++..|.++...|...+...+..|+.-.+.+|.+.
T Consensus       138 ~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  138 NFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             hhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            9999999999999999999999999998888777888887777777665

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.23  E-value=1.7e-06  Score=44.92  Aligned_cols=30  Identities=37%  Similarity=0.574  Sum_probs=21.1

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 036263          230 SWNSIIVGFAVNGFVGEALEYFNLMQKGVF  259 (305)
Q Consensus       230 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  259 (305)
                      +|+.++.+|++.|++++|.++|++|.+.|+
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            577777777777777777777777776653

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.23  E-value=0.00015  Score=66.68  Aligned_cols=220  Identities=11%  Similarity=0.046  Sum_probs=144.5

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC--------CChhHHHHHHHHHHhcCChHHHHHHHH
Q 036263           51 SISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS--------NNVMVSTALLDMYAKFGRMDLATVVFD  122 (305)
Q Consensus        51 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--------~~~~~~~~ll~~~~~~g~~~~a~~~~~  122 (305)
                      +...+...+-+++|..+|++.     ..+......++.-......        -...+|+-+..+..+.|.+.+|.+-|-
T Consensus      1054 ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyi 1128 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYI 1128 (1666)
T ss_pred             HHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHH
Confidence            344556677788888888875     3344444444443322222        456788888888888888888888888


Q ss_pred             hcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHH
Q 036263          123 VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT  202 (305)
Q Consensus       123 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  202 (305)
                      +..+...|..++....+.|.|++-.+++...++..-+|...  +.|+-+|++.++..+.++++       ..|+......
T Consensus      1129 kadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~ 1199 (1666)
T KOG0985|consen 1129 KADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQ 1199 (1666)
T ss_pred             hcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHH
Confidence            88888888889999999999998888887777766666543  46778888888887766654       2355555555


Q ss_pred             HHHHHHhcCChHHHHHHHHhccc------------------------CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 036263          203 LMDVYSRFGCIEFARQVFQRMHK------------------------RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV  258 (305)
Q Consensus       203 li~~~~~~g~~~~a~~~~~~~~~------------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  258 (305)
                      +.+-|...|.++.|.-+|.....                        .+..+|-.+-.+|...+.+.-|     +|-..+
T Consensus      1200 vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA-----QiCGL~ 1274 (1666)
T KOG0985|consen 1200 VGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA-----QICGLN 1274 (1666)
T ss_pred             HhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH-----HhcCce
Confidence            55556666666665555544331                        1344555555555544433322     233333


Q ss_pred             CCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 036263          259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIM  289 (305)
Q Consensus       259 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  289 (305)
                      +.....-..-++..|...|-+++.+.+++.-
T Consensus      1275 iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1275 IIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred             EEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence            4445566777888888888888887776643

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.22  E-value=6.5e-05  Score=54.24  Aligned_cols=106  Identities=11%  Similarity=-0.012  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHH
Q 036263          162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGF  238 (305)
Q Consensus       162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~  238 (305)
                      ......+...+...|+.++|.+.++.+...+ +.+...+..+...+.+.|++++|...+++..+   .+...+..+...|
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~   95 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL   95 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            3445566667777888888888888877765 55677777788888888888888888877753   2456666677778


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036263          239 AVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL  270 (305)
Q Consensus       239 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li  270 (305)
                      ...|++++|...|++..+.  .|+...+..+.
T Consensus        96 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~  125 (135)
T TIGR02552        96 LALGEPESALKALDLAIEI--CGENPEYSELK  125 (135)
T ss_pred             HHcCCHHHHHHHHHHHHHh--ccccchHHHHH
Confidence            8888888888888877773  45555544433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.22  E-value=9.6e-05  Score=63.78  Aligned_cols=179  Identities=16%  Similarity=0.146  Sum_probs=131.5

Q ss_pred             HHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCChhHH
Q 036263          108 YAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD-YLTIISVLNVCANVRTLGIG  181 (305)
Q Consensus       108 ~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a  181 (305)
                      +.+.|++.+|.-.|+....     ...|--|.......++-..|+..+++..+  +.|+ ....-.|.-.|...|.-..|
T Consensus       295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg~q~~A  372 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEGLQNQA  372 (579)
T ss_pred             HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhHHHH
Confidence            5678889999988888754     55677788888888888888888777665  4563 44444444444444444344


Q ss_pred             HHHHHHH------------------------------------------hhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 036263          182 LWMHRYV------------------------------------------PKQDFKDNVRVCNTLMDVYSRFGCIEFARQV  219 (305)
Q Consensus       182 ~~~~~~~------------------------------------------~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  219 (305)
                      ...++..                                          ...+..+|..++..|.-.|--.|++++|...
T Consensus       373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc  452 (579)
T KOG1125|consen  373 LKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC  452 (579)
T ss_pred             HHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence            3333332                                          2333346777888888888889999999999


Q ss_pred             HHhcc--cC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          220 FQRMH--KR-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE-VSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       220 ~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      |+...  +| |..+||.|...++...+.++|+..|++..+  ++|+- ....-|..+|...|.+++|.+.|-...
T Consensus       453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL  525 (579)
T KOG1125|consen  453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL  525 (579)
T ss_pred             HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence            99987  34 778999999999999999999999999998  66765 334455677889999999988877655

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.19  E-value=0.00014  Score=56.80  Aligned_cols=149  Identities=12%  Similarity=-0.005  Sum_probs=120.3

Q ss_pred             HHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhH
Q 036263          106 DMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGI  180 (305)
Q Consensus       106 ~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~  180 (305)
                      ..+.-.|+-+....+......     ....+.++....+.|++..|...|++.... -++|..+|+.+--+|-+.|+++.
T Consensus        74 ~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~  152 (257)
T COG5010          74 TALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDE  152 (257)
T ss_pred             HHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhH
Confidence            335555776766666665422     234555888999999999999999997653 36689999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263          181 GLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQK  256 (305)
Q Consensus       181 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  256 (305)
                      |..-|.+..+.. +-+...++.+.-.|.-.|+.+.|..++.....   .|...-..+.......|++++|..+...-..
T Consensus       153 Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~  230 (257)
T COG5010         153 ARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQELL  230 (257)
T ss_pred             HHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccccc
Confidence            999999998875 55677889999999999999999999988762   3778888888999999999999988765433

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=0.00096  Score=55.71  Aligned_cols=156  Identities=10%  Similarity=-0.073  Sum_probs=89.4

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHhcCccccH-----HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036263           96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFW-----TALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLN  170 (305)
Q Consensus        96 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~  170 (305)
                      -++.....+..++...|+.++|+..|++......|     ....-.+.+.|+++....+...+.... +-....|-.-..
T Consensus       230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~  308 (564)
T KOG1174|consen  230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQ  308 (564)
T ss_pred             ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhh
Confidence            33444555555555556666666666555442222     112223344555555555554443321 122222323333


Q ss_pred             HhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHH
Q 036263          171 VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEA  247 (305)
Q Consensus       171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a  247 (305)
                      .+...++++.|..+-++.++.+ +-+...|-.-...+...|+.++|.-.|+....  | +..+|.-|+.+|...|++.+|
T Consensus       309 ~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA  387 (564)
T KOG1174|consen  309 LLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA  387 (564)
T ss_pred             hhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence            3345566666666666665544 33444555555677788899998888887763  3 778999999999999988888


Q ss_pred             HHHHHH
Q 036263          248 LEYFNL  253 (305)
Q Consensus       248 ~~~~~~  253 (305)
                      ...-+.
T Consensus       388 ~~~An~  393 (564)
T KOG1174|consen  388 NALANW  393 (564)
T ss_pred             HHHHHH
Confidence            765544

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.16  E-value=7.3e-05  Score=54.00  Aligned_cols=112  Identities=14%  Similarity=0.097  Sum_probs=88.5

Q ss_pred             HHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 036263          184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK  260 (305)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  260 (305)
                      .++...+.. +.+......+...+...|++++|.+.|+.+..   .+...|..+...+...|++++|..+++...+.+ +
T Consensus         5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p   82 (135)
T TIGR02552         5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-P   82 (135)
T ss_pred             hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence            344555443 33456677788889999999999999999864   366788889999999999999999999988764 3


Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCcc
Q 036263          261 TDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIE  300 (305)
Q Consensus       261 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~  300 (305)
                      .+...+..+...+...|+++.|...|+...   .+.|+..
T Consensus        83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~  119 (135)
T TIGR02552        83 DDPRPYFHAAECLLALGEPESALKALDLAI---EICGENP  119 (135)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHH---Hhccccc
Confidence            456777788889999999999999999888   3445543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.15  E-value=4.9e-05  Score=55.57  Aligned_cols=110  Identities=7%  Similarity=-0.119  Sum_probs=89.0

Q ss_pred             HHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 036263          182 LWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV  258 (305)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  258 (305)
                      +.++++..+.+  |+  .+......+...|++++|...|+....   .+...|..+..++...|++++|...|++....+
T Consensus        13 ~~~~~~al~~~--p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~   88 (144)
T PRK15359         13 EDILKQLLSVD--PE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD   88 (144)
T ss_pred             HHHHHHHHHcC--HH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            34455554432  43  355678888999999999999999874   367889999999999999999999999999853


Q ss_pred             CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCc
Q 036263          259 FKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQI  299 (305)
Q Consensus       259 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~  299 (305)
                       +.+...+..+..++...|++++|...|+...   .+.|+.
T Consensus        89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al---~~~p~~  125 (144)
T PRK15359         89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAI---KMSYAD  125 (144)
T ss_pred             -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCC
Confidence             3477888899999999999999999999987   455554

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.13  E-value=3.2e-05  Score=52.33  Aligned_cols=79  Identities=14%  Similarity=0.148  Sum_probs=66.8

Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhcCcC--------ChhHHHHHHHHHhhcCCCCChhHHH
Q 036263          131 TALLNGFVKRDYFEEALEYFRVMQISGV-EPDYLTIISVLNVCANVR--------TLGIGLWMHRYVPKQDFKDNVRVCN  201 (305)
Q Consensus       131 ~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~  201 (305)
                      ...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..        +.-....+++.|...+++|+..+|+
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn  108 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN  108 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence            4456666777999999999999999999 999999999999887653        2345678899999999999999999


Q ss_pred             HHHHHHHh
Q 036263          202 TLMDVYSR  209 (305)
Q Consensus       202 ~li~~~~~  209 (305)
                      .++..+.+
T Consensus       109 ivl~~Llk  116 (120)
T PF08579_consen  109 IVLGSLLK  116 (120)
T ss_pred             HHHHHHHH
Confidence            99998765

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=0.00054  Score=59.55  Aligned_cols=211  Identities=11%  Similarity=0.053  Sum_probs=129.5

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCccccH
Q 036263           51 SISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFW  130 (305)
Q Consensus        51 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  130 (305)
                      =+.-+...|++++|+...+++...+  ||..+-                 +..=+-++.+.+++++|+.+.+.-....++
T Consensus        18 ~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a-----------------~~cKvValIq~~ky~~ALk~ikk~~~~~~~   78 (652)
T KOG2376|consen   18 DLNRHGKNGEYEEAVKTANKILSIV--PDDEDA-----------------IRCKVVALIQLDKYEDALKLIKKNGALLVI   78 (652)
T ss_pred             HHHHhccchHHHHHHHHHHHHHhcC--CCcHhh-----------------HhhhHhhhhhhhHHHHHHHHHHhcchhhhc
Confidence            3566778899999999999998764  543221                 122233467789999999877776654444


Q ss_pred             HHH----HHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC-hhHHHHHH
Q 036263          131 TAL----LNGFVKRDYFEEALEYFRVMQISGVEPD-YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN-VRVCNTLM  204 (305)
Q Consensus       131 ~~l----i~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li  204 (305)
                      +..    ..+..+.++.++|+..++     |..++ ..+...-...+.+.|++++|..+|+.+.+.+.+.- ...-..++
T Consensus        79 ~~~~fEKAYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~  153 (652)
T KOG2376|consen   79 NSFFFEKAYCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL  153 (652)
T ss_pred             chhhHHHHHHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            444    445567899999998887     44443 33556666778899999999999999988763321 11111111


Q ss_pred             HHHHhcCChHHHHHHHHhcccCchhhHHHH---HHHHHhcCChHHHHHHHHHHHHC-------C------CCCCHH-HHH
Q 036263          205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSI---IVGFAVNGFVGEALEYFNLMQKG-------V------FKTDEV-SFT  267 (305)
Q Consensus       205 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~-------g------~~p~~~-~~~  267 (305)
                      .+    +-...+. +.+........+|..+   ...++..|++.+|+++++...+-       +      +.-... +-.
T Consensus       154 a~----~a~l~~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Irv  228 (652)
T KOG2376|consen  154 AV----AAALQVQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRV  228 (652)
T ss_pred             HH----HHhhhHH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHH
Confidence            11    1112222 3444443333344443   34566788888888888876211       1      111111 122


Q ss_pred             HHHHHHhccCcHHHHHHHHHHHH
Q 036263          268 GALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       268 ~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      .+.-++...|+.++|.+++....
T Consensus       229 QlayVlQ~~Gqt~ea~~iy~~~i  251 (652)
T KOG2376|consen  229 QLAYVLQLQGQTAEASSIYVDII  251 (652)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHH
Confidence            33445567788888888888776

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=0.0011  Score=52.07  Aligned_cols=148  Identities=11%  Similarity=0.057  Sum_probs=112.0

Q ss_pred             HHHHHhcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh----cCcCChhH
Q 036263          105 LDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVC----ANVRTLGI  180 (305)
Q Consensus       105 l~~~~~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~----~~~~~~~~  180 (305)
                      ...|++.|++++|++..+..........=+..+.+..+.+.|.+.++.|.+-   -+..|.+-|..++    ...+...+
T Consensus       115 a~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qd  191 (299)
T KOG3081|consen  115 AIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQD  191 (299)
T ss_pred             hHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhh
Confidence            4458889999999999998665555555567778888999999999999863   3456666555554    45567899


Q ss_pred             HHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccC---chhhHHHHHHHHHhcCChH-HHHHHHHHHHH
Q 036263          181 GLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVG-EALEYFNLMQK  256 (305)
Q Consensus       181 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~  256 (305)
                      |.-+|++|-+. .+|++.+.+....++...|++++|..++++....   +..+...+|..-...|..+ ...+.+..++.
T Consensus       192 AfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~  270 (299)
T KOG3081|consen  192 AFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKL  270 (299)
T ss_pred             HHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence            99999999875 4899999999999999999999999999999853   4555555555555555544 44455666665

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.13  E-value=0.0017  Score=55.33  Aligned_cols=181  Identities=12%  Similarity=0.046  Sum_probs=122.2

Q ss_pred             CCCCCchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHH
Q 036263           39 KSTIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLAT  118 (305)
Q Consensus        39 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~  118 (305)
                      ....|+...+...+.+......-..+..++..-.+.  .-...-|...+.                   +...|+.++|+
T Consensus       268 ~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~~-------------------~~~~~~~d~A~  326 (484)
T COG4783         268 KLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRALQ-------------------TYLAGQYDEAL  326 (484)
T ss_pred             CCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHHH-------------------HHHhcccchHH
Confidence            334566677777777666554444444444333221  112223333332                   34568888888


Q ss_pred             HHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCChhHHHHHHHHHhhcC
Q 036263          119 VVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD-YLTIISVLNVCANVRTLGIGLWMHRYVPKQD  192 (305)
Q Consensus       119 ~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~  192 (305)
                      ..++.+..     ...+......+.+.++.++|.+.++.+...  .|+ ....-.+-.++.+.|++.+|..+++......
T Consensus       327 ~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~  404 (484)
T COG4783         327 KLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND  404 (484)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Confidence            88877643     333455567788888888888888887764  665 4455566778888888888888888877765


Q ss_pred             CCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263          193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG  257 (305)
Q Consensus       193 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  257 (305)
                       +.|+..|..|.++|...|+..++..-.              ..+|...|+++.|...+....+.
T Consensus       405 -p~dp~~w~~LAqay~~~g~~~~a~~A~--------------AE~~~~~G~~~~A~~~l~~A~~~  454 (484)
T COG4783         405 -PEDPNGWDLLAQAYAELGNRAEALLAR--------------AEGYALAGRLEQAIIFLMRASQQ  454 (484)
T ss_pred             -CCCchHHHHHHHHHHHhCchHHHHHHH--------------HHHHHhCCCHHHHHHHHHHHHHh
Confidence             777888888888888888888777653              34567788888888888887765

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.11  E-value=0.00014  Score=61.81  Aligned_cols=120  Identities=13%  Similarity=0.033  Sum_probs=92.5

Q ss_pred             HHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccC---chhhHHHHHHHHHhc
Q 036263          165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVN  241 (305)
Q Consensus       165 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~  241 (305)
                      ...|+..+...++++.|..+++++.+..  |+  ....+.+.+...++-.+|.+++++..+.   +......-...|.+.
T Consensus       172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k  247 (395)
T PF09295_consen  172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK  247 (395)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            4456666777788999999999988775  44  3445777777888888888888887753   444555556668889


Q ss_pred             CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          242 GFVGEALEYFNLMQKGVFKTDE-VSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       242 g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      ++++.|.++.+++.+  ..|+. .+|..|..+|.+.|+++.|+..++.+-
T Consensus       248 ~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  248 KKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             CCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            999999999999888  45655 588899999999999999998887654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.09  E-value=0.0002  Score=60.85  Aligned_cols=125  Identities=13%  Similarity=0.084  Sum_probs=96.7

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhcCc--cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCc
Q 036263           98 VMVSTALLDMYAKFGRMDLATVVFDVMRG--CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANV  175 (305)
Q Consensus        98 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~  175 (305)
                      -....+|+..+...++++.|..+|+++..  ..+...++..+...++-.+|.+++++.... .+-+......-...|.+.
T Consensus       169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k  247 (395)
T PF09295_consen  169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSK  247 (395)
T ss_pred             hHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhc
Confidence            34456667777777889999999998865  555666778888888888888888887754 233566666667778888


Q ss_pred             CChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263          176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH  224 (305)
Q Consensus       176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  224 (305)
                      ++.+.|..+.+++.+.. +.+-.+|..|..+|.+.|+++.|...+..++
T Consensus       248 ~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  248 KKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             CCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            89999999999888874 4455688999999999999999998888876

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.09  E-value=0.003  Score=53.91  Aligned_cols=115  Identities=14%  Similarity=0.074  Sum_probs=71.5

Q ss_pred             HHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHH
Q 036263          137 FVKRDYFEEALEYFRVMQISGVEPD-YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF  215 (305)
Q Consensus       137 ~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  215 (305)
                      +...|++++|+..++.+...  .|+ ..-.......+.+.++..+|.+.++.+.... +......-.+.++|.+.|++.+
T Consensus       316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~e  392 (484)
T COG4783         316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQE  392 (484)
T ss_pred             HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHH
Confidence            33456677777777776553  443 3344455556667777777777777776653 2225555666667777777777


Q ss_pred             HHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 036263          216 ARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLM  254 (305)
Q Consensus       216 a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m  254 (305)
                      |.+++++...   .|...|..|..+|...|+..++..-..++
T Consensus       393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~  434 (484)
T COG4783         393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG  434 (484)
T ss_pred             HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence            7777766653   25566777777777777766666554443

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.06  E-value=0.0056  Score=53.00  Aligned_cols=148  Identities=14%  Similarity=0.057  Sum_probs=111.1

Q ss_pred             hHHHHHHHHHHHHc-CCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHH
Q 036263          143 FEEALEYFRVMQIS-GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD-NVRVCNTLMDVYSRFGCIEFARQVF  220 (305)
Q Consensus       143 ~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~  220 (305)
                      .+.....++++... .++| .-+|-..|+.-.+..-+..|..+|.+..+.+..+ ++.++++++..||. ++..-|.++|
T Consensus       347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF  424 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF  424 (656)
T ss_pred             hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence            33344444444332 2233 3367777888888888999999999999988777 78888888888776 5678899999


Q ss_pred             Hhccc--Cchhh-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHHH
Q 036263          221 QRMHK--RTLVS-WNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE--VSFTGALTACSHAGLIEDGLQYFDIMKKI  292 (305)
Q Consensus       221 ~~~~~--~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~  292 (305)
                      +--.+  +|... -...+.-+...++-..|..+|++....++.||.  .+|..+|..=+.-|+...+.++-+.+...
T Consensus       425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a  501 (656)
T KOG1914|consen  425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA  501 (656)
T ss_pred             HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            87654  34443 355677778888999999999999888766655  78999999999999999999988877633

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.06  E-value=0.00046  Score=50.52  Aligned_cols=113  Identities=8%  Similarity=-0.073  Sum_probs=53.1

Q ss_pred             CCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC--hhHHHHHHHHHHhcCChH
Q 036263          140 RDYFEEALEYFRVMQISGVEPD---YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN--VRVCNTLMDVYSRFGCIE  214 (305)
Q Consensus       140 ~g~~~~a~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~  214 (305)
                      .++...+...++.+.... +.+   ....-.+...+...|++++|...|+........++  ....-.+...+...|+++
T Consensus        24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d  102 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD  102 (145)
T ss_pred             CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            555555555555555431 111   11222233445555666666666666555441121  112333445555555555


Q ss_pred             HHHHHHHhcccC--chhhHHHHHHHHHhcCChHHHHHHHHH
Q 036263          215 FARQVFQRMHKR--TLVSWNSIIVGFAVNGFVGEALEYFNL  253 (305)
Q Consensus       215 ~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~  253 (305)
                      +|...++....+  ....+......|.+.|++++|...|+.
T Consensus       103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen  103 EALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            555555554322  222333444555555555555555543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.04  E-value=0.00059  Score=63.58  Aligned_cols=180  Identities=11%  Similarity=-0.005  Sum_probs=126.4

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHH------------------HHH
Q 036263           96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEY------------------FRV  152 (305)
Q Consensus        96 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~------------------~~~  152 (305)
                      .+...+..|+..+...+++++|.++.+....     ...|-.+...+.+.++..++..+                  ...
T Consensus        29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~  108 (906)
T PRK14720         29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDK  108 (906)
T ss_pred             chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHH
Confidence            3455678888889999999999999886643     33344444455555555555444                  222


Q ss_pred             HHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHH
Q 036263          153 MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWN  232 (305)
Q Consensus       153 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~  232 (305)
                      |...  .-+...+..+..+|-+.|+.+++..+++++.+.+ +-|+.+.|.+...|... ++++|.+++.+....      
T Consensus       109 i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~------  178 (906)
T PRK14720        109 ILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR------  178 (906)
T ss_pred             HHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH------
Confidence            2221  1122566777888888999999999999999998 77899999999999999 999999998776532      


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHC-------------------CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          233 SIIVGFAVNGFVGEALEYFNLMQKG-------------------VFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       233 ~li~~~~~~g~~~~a~~~~~~m~~~-------------------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                           |...+++.++.++|.++...                   |..--..++-.+...|-..++|+++..+++.+.
T Consensus       179 -----~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL  250 (906)
T PRK14720        179 -----FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKIL  250 (906)
T ss_pred             -----HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence                 45555555555555555543                   222333455556677888889999999999887

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.03  E-value=0.00035  Score=51.21  Aligned_cols=123  Identities=8%  Similarity=-0.031  Sum_probs=92.3

Q ss_pred             HHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhccc--Cch----hhHHH
Q 036263          163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN---VRVCNTLMDVYSRFGCIEFARQVFQRMHK--RTL----VSWNS  233 (305)
Q Consensus       163 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~----~~~~~  233 (305)
                      ..|..++..+ ..++...+...++.+.+.. +.+   ....-.+...+...|++++|...|+....  ++.    ...-.
T Consensus        13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~   90 (145)
T PF09976_consen   13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR   90 (145)
T ss_pred             HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence            4566666665 4888889999999998864 333   23344466788999999999999999884  222    24445


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 036263          234 IIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM  289 (305)
Q Consensus       234 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  289 (305)
                      +...+...|++++|...++......  .....+...-..+.+.|++++|...|+..
T Consensus        91 LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   91 LARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            6788899999999999997754433  34456667778999999999999999853

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=0.0039  Score=48.83  Aligned_cols=181  Identities=14%  Similarity=0.063  Sum_probs=126.2

Q ss_pred             cCChhHHHHHHHHHHhC---C-CCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc--cccHH
Q 036263           58 SGCILEAALEFTRMRLY---G-TNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG--CDFWT  131 (305)
Q Consensus        58 ~~~~~~a~~~~~~m~~~---g-~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~  131 (305)
                      ..+.++.++++.++...   | ..|+..+.                 |.-++-+....|+.+.|..+++++.+  ..++.
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l-----------------~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~R   87 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTL-----------------YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKR   87 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHH-----------------HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChh
Confidence            46778888888887753   3 45554433                 34444556677999999999988755  33322


Q ss_pred             HHH---HHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 036263          132 ALL---NGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS  208 (305)
Q Consensus       132 ~li---~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  208 (305)
                      ...   --+-..|.+++|+++++.+.+.. +-|..++--=+...-..|+--+|.+-+....+. +..|...|.-+-..|.
T Consensus        88 V~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~  165 (289)
T KOG3060|consen   88 VGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYL  165 (289)
T ss_pred             HHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHH
Confidence            221   22445788999999999998875 335666665555566666666777766666655 5789999999999999


Q ss_pred             hcCChHHHHHHHHhcc--cCch-hhHHHHHHHHHhc---CChHHHHHHHHHHHHC
Q 036263          209 RFGCIEFARQVFQRMH--KRTL-VSWNSIIVGFAVN---GFVGEALEYFNLMQKG  257 (305)
Q Consensus       209 ~~g~~~~a~~~~~~~~--~~~~-~~~~~li~~~~~~---g~~~~a~~~~~~m~~~  257 (305)
                      ..|++++|.-.++++.  .|.. ..+..+...+...   .+.+.+.++|.+..+-
T Consensus       166 ~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  166 SEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL  220 (289)
T ss_pred             hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            9999999999999987  5633 3444455544333   3567788888888774

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.01  E-value=0.0031  Score=60.81  Aligned_cols=190  Identities=9%  Similarity=-0.030  Sum_probs=124.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhcCc----c---------ccHHHHHHHHHcCCChHHHHHHHHHHHHc--CCCC--CHH
Q 036263          101 STALLDMYAKFGRMDLATVVFDVMRG----C---------DFWTALLNGFVKRDYFEEALEYFRVMQIS--GVEP--DYL  163 (305)
Q Consensus       101 ~~~ll~~~~~~g~~~~a~~~~~~~~~----~---------~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p--~~~  163 (305)
                      ...+...+...|+++.|...+++...    .         ..+..+...+...|++++|...+.+....  ...+  ...
T Consensus       534 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~  613 (903)
T PRK04841        534 LLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQ  613 (903)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHH
Confidence            34556667788999999988876533    0         11334445667779999999888876442  1112  233


Q ss_pred             HHHHHHHHhcCcCChhHHHHHHHHHhhcC--CCCChh--H--HHHHHHHHHhcCChHHHHHHHHhcccCch-------hh
Q 036263          164 TIISVLNVCANVRTLGIGLWMHRYVPKQD--FKDNVR--V--CNTLMDVYSRFGCIEFARQVFQRMHKRTL-------VS  230 (305)
Q Consensus       164 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~-------~~  230 (305)
                      .+..+...+...|+.++|...++......  ......  .  ....+..+...|+.+.|.+.+.....+..       ..
T Consensus       614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~  693 (903)
T PRK04841        614 CLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQ  693 (903)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHH
Confidence            44445566778899999998888775421  111110  1  01123445567899999999877664321       11


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          231 WNSIIVGFAVNGFVGEALEYFNLMQKG----VFKTD-EVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       231 ~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      +..+..++...|++++|...+++....    |..++ ..+...+..++.+.|+.++|...+.+..
T Consensus       694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al  758 (903)
T PRK04841        694 WRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL  758 (903)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            345677788999999999999887553    33332 2456666678889999999999999887

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.00  E-value=0.0012  Score=54.00  Aligned_cols=190  Identities=15%  Similarity=0.089  Sum_probs=117.1

Q ss_pred             HHHhcCChHHHHHHHHhcCccccHHHHHHHHH--cCC-------ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCcC
Q 036263          107 MYAKFGRMDLATVVFDVMRGCDFWTALLNGFV--KRD-------YFEEALEYFRVMQISGVEPDY-LTIISVLNVCANVR  176 (305)
Q Consensus       107 ~~~~~g~~~~a~~~~~~~~~~~~~~~li~~~~--~~g-------~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~  176 (305)
                      -|.+.+++.+|..+..++..+..|.-++.+..  ..|       ..+-|.+.|+..-+++.+-|. ..-.++..++.-..
T Consensus       294 YyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~  373 (557)
T KOG3785|consen  294 YYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSF  373 (557)
T ss_pred             eecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHH
Confidence            34555666666666655554444444433321  122       233444444433333333321 22334444445555


Q ss_pred             ChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccC---chhhHHHH-HHHHHhcCChHHHHHHHH
Q 036263          177 TLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR---TLVSWNSI-IVGFAVNGFVGEALEYFN  252 (305)
Q Consensus       177 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l-i~~~~~~g~~~~a~~~~~  252 (305)
                      +++++.-.+......-...|.. --.+.++++..|.+.+|+++|-++..|   |..+|-++ .++|.++++++.|++++-
T Consensus       374 qFddVl~YlnSi~sYF~NdD~F-n~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l  452 (557)
T KOG3785|consen  374 QFDDVLTYLNSIESYFTNDDDF-NLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML  452 (557)
T ss_pred             HHHHHHHHHHHHHHHhcCcchh-hhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            6666666666665543223333 334678889999999999999998865   56677654 678899999999988876


Q ss_pred             HHHHCCCCCCHHHHHHH-HHHHhccCcHHHHHHHHHHHHHHhCCCCCccccc
Q 036263          253 LMQKGVFKTDEVSFTGA-LTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHG  303 (305)
Q Consensus       253 ~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~  303 (305)
                      ++..   +.+..+.-.+ .+-|-+.+.+--|-+.|+.++   ...|+++.|.
T Consensus       453 k~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE---~lDP~pEnWe  498 (557)
T KOG3785|consen  453 KTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELE---ILDPTPENWE  498 (557)
T ss_pred             hcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---ccCCCccccC
Confidence            6544   2344444444 457889999999999999998   6778887663

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.99  E-value=0.00019  Score=48.62  Aligned_cols=89  Identities=11%  Similarity=0.127  Sum_probs=68.1

Q ss_pred             HHHHHHHHhcCcCChhHHHHHHHHHhhcCC-CCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcC
Q 036263          164 TIISVLNVCANVRTLGIGLWMHRYVPKQDF-KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNG  242 (305)
Q Consensus       164 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g  242 (305)
                      |-..-|..|...+++.....+|+.+.+.|+ .|+..+|+.++.+.++..--..+                       -.+
T Consensus        27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~-----------------------ie~   83 (120)
T PF08579_consen   27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSED-----------------------IEN   83 (120)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchh-----------------------HHH
Confidence            334556667777999999999999999998 88999999998887664322111                       122


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036263          243 FVGEALEYFNLMQKGVFKTDEVSFTGALTACSH  275 (305)
Q Consensus       243 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~  275 (305)
                      +....+.+|++|...+++|+..||+.++..+.+
T Consensus        84 kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llk  116 (120)
T PF08579_consen   84 KLTNLLTVYQDILSNKLKPNDETYNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence            456778889999999999999999999988765

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.98  E-value=0.0068  Score=50.40  Aligned_cols=107  Identities=8%  Similarity=0.034  Sum_probs=80.6

Q ss_pred             HHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcC
Q 036263          163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNG  242 (305)
Q Consensus       163 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g  242 (305)
                      .+.+..|.-|...|+...|.++-.+.   + .|+..-|...+.+|++.++|++-.++...  +.++..|..++.+|.+.|
T Consensus       178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~  251 (319)
T PF04840_consen  178 LSLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYG  251 (319)
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCC
Confidence            34555566677788887777775554   3 47888899999999999999988887654  456788999999999999


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 036263          243 FVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQY  285 (305)
Q Consensus       243 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~  285 (305)
                      +..+|..+..+     ++     +..-+..|.+.|++.+|.+.
T Consensus       252 ~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~  284 (319)
T PF04840_consen  252 NKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQE  284 (319)
T ss_pred             CHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHH
Confidence            99999988877     21     13456667777887777654

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.97  E-value=0.00029  Score=60.32  Aligned_cols=120  Identities=12%  Similarity=-0.037  Sum_probs=81.7

Q ss_pred             CCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhccc----Cchhh
Q 036263          157 GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD--FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK----RTLVS  230 (305)
Q Consensus       157 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~  230 (305)
                      +.+.+......+++.+....+++.+..++-..+...  ...-..|..++|+.|.+.|..+++..+++.=..    ||..+
T Consensus        61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s  140 (429)
T PF10037_consen   61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS  140 (429)
T ss_pred             CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence            344566677777777777777777777777766542  222234445777777777777777777766553    67777


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 036263          231 WNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA  276 (305)
Q Consensus       231 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~  276 (305)
                      +|.|+..+.+.|++..|.++...|..++...+..|+..-+.+|.+.
T Consensus       141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            7777777777777777777777776666666666666666665554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.97  E-value=0.00089  Score=59.91  Aligned_cols=160  Identities=9%  Similarity=0.086  Sum_probs=79.0

Q ss_pred             hcCChHHHHHHHHhcCc----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHH
Q 036263          110 KFGRMDLATVVFDVMRG----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMH  185 (305)
Q Consensus       110 ~~g~~~~a~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~  185 (305)
                      ....|.+|+.+++.+.+    ..-|..+...|...|+++.|.++|.+-         ..++-.|..|.+.|+|+.|.++-
T Consensus       744 ~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla  814 (1636)
T KOG3616|consen  744 GAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLA  814 (1636)
T ss_pred             hhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHH
Confidence            33445555555554443    222445555555555555555555331         12344455556666665555554


Q ss_pred             HHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 036263          186 RYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS  265 (305)
Q Consensus       186 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~  265 (305)
                      .+..  |.......|-+-..-+-+.|++.+|+++|-.+..|+.     .|..|-+.|..+..+.+.++-...-   =..|
T Consensus       815 ~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~---l~dt  884 (1636)
T KOG3616|consen  815 EECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDH---LHDT  884 (1636)
T ss_pred             HHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChhh---hhHH
Confidence            3332  2123334444444455555666666666555555543     3455566666666555554422111   1134


Q ss_pred             HHHHHHHHhccCcHHHHHHHHHH
Q 036263          266 FTGALTACSHAGLIEDGLQYFDI  288 (305)
Q Consensus       266 ~~~li~~~~~~g~~~~a~~~~~~  288 (305)
                      ...+..-+...|+.+.|.+-|-+
T Consensus       885 ~~~f~~e~e~~g~lkaae~~fle  907 (1636)
T KOG3616|consen  885 HKHFAKELEAEGDLKAAEEHFLE  907 (1636)
T ss_pred             HHHHHHHHHhccChhHHHHHHHh
Confidence            44455555555666666555443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.96  E-value=0.006  Score=49.95  Aligned_cols=170  Identities=10%  Similarity=-0.013  Sum_probs=107.9

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHh---hcCCCC-----CCh--------hHHHH---HHHHHH
Q 036263           49 TSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSG---CADFPS-----NNV--------MVSTA---LLDMYA  109 (305)
Q Consensus        49 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~---~~~~~~-----~~~--------~~~~~---ll~~~~  109 (305)
                      --+-..+...|++..|+.-|....+    -|+..|..+.+-   |...|.     +|.        ..+.+   -...+.
T Consensus        42 lElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll  117 (504)
T KOG0624|consen   42 LELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL  117 (504)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh
Confidence            3455667778888888888887754    344455554432   222222     111        11111   124677


Q ss_pred             hcCChHHHHHHHHhcCc--------------------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036263          110 KFGRMDLATVVFDVMRG--------------------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVL  169 (305)
Q Consensus       110 ~~g~~~~a~~~~~~~~~--------------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll  169 (305)
                      +.|.++.|..-|+.+.+                    .......+..+...|+...|+.....+.+-. +.|...|..-.
T Consensus       118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Ra  196 (504)
T KOG0624|consen  118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARA  196 (504)
T ss_pred             hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHH
Confidence            88999999999988854                    0113344556667899999999999888742 34888888888


Q ss_pred             HHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263          170 NVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH  224 (305)
Q Consensus       170 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  224 (305)
                      .+|...|.+..|..=++...+.. ..+...+--+-..+...|+.+.++...++..
T Consensus       197 kc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL  250 (504)
T KOG0624|consen  197 KCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL  250 (504)
T ss_pred             HHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            88999999988877777666554 3344444445555566666666665555544

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.95  E-value=0.0035  Score=50.16  Aligned_cols=58  Identities=10%  Similarity=0.020  Sum_probs=46.9

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          233 SIIVGFAVNGFVGEALEYFNLMQKG--VFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       233 ~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      .+.+-|.+.|.+..|..-++.+.+.  +.+........++.+|.+.|..++|..+...+.
T Consensus       180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            4456688999999999999999875  344455677788899999999999999887665

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.91  E-value=0.0012  Score=58.78  Aligned_cols=184  Identities=13%  Similarity=0.092  Sum_probs=148.9

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCc
Q 036263           96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANV  175 (305)
Q Consensus        96 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~  175 (305)
                      |-...-..+...+.+.|-...|..+|++.   ..|..+|.+|...|+.++|..+..+-.+  -+||..-|..+.+.....
T Consensus       396 p~Wq~q~~laell~slGitksAl~I~Erl---emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~  470 (777)
T KOG1128|consen  396 PIWQLQRLLAELLLSLGITKSALVIFERL---EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDP  470 (777)
T ss_pred             CcchHHHHHHHHHHHcchHHHHHHHHHhH---HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccCh
Confidence            33445566778888999999999999986   4699999999999999999999988776  378999999999998888


Q ss_pred             CChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccC---chhhHHHHHHHHHhcCChHHHHHHHH
Q 036263          176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYFN  252 (305)
Q Consensus       176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~  252 (305)
                      .-++.|.++.+....+       .-..+.......++++++.+.|+.-.+-   -..+|-.+-.+..+.+++..|.+.|.
T Consensus       471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~  543 (777)
T KOG1128|consen  471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFH  543 (777)
T ss_pred             HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence            8899999998765432       1122222223478999999999876642   55788888888999999999999999


Q ss_pred             HHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHHhC
Q 036263          253 LMQKGVFKTDE-VSFTGALTACSHAGLIEDGLQYFDIMKKIYR  294 (305)
Q Consensus       253 ~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  294 (305)
                      .-..  ..||. ..|+.+-.+|.+.|+-.+|...+++.. +..
T Consensus       544 rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAl-Kcn  583 (777)
T KOG1128|consen  544 RCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEAL-KCN  583 (777)
T ss_pred             HHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHh-hcC
Confidence            9888  45654 789999999999999999999999988 544

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.91  E-value=0.0013  Score=57.11  Aligned_cols=229  Identities=14%  Similarity=0.053  Sum_probs=155.7

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCC-HhhHHH----------------HHHhhcCCCCCChhHHHHHHHHHHhcCChHH
Q 036263           54 RHCRSGCILEAALEFTRMRLYGTNPS-HITFVT----------------LLSGCADFPSNNVMVSTALLDMYAKFGRMDL  116 (305)
Q Consensus        54 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~----------------ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~  116 (305)
                      .+.+.|++.+|.-+|+..+..  .|. ...|--                .+.-|.+....+....-+|.-.|...|.-..
T Consensus       294 ~lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~  371 (579)
T KOG1125|consen  294 NLMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQ  371 (579)
T ss_pred             HHHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHH
Confidence            456788899999999988764  332 222222                2233333333566677777777777787777


Q ss_pred             HHHHHHhcCc-cccHHHHHH-----------HHHcCCChHHHHHHHHHH-HHcCCCCCHHHHHHHHHHhcCcCChhHHHH
Q 036263          117 ATVVFDVMRG-CDFWTALLN-----------GFVKRDYFEEALEYFRVM-QISGVEPDYLTIISVLNVCANVRTLGIGLW  183 (305)
Q Consensus       117 a~~~~~~~~~-~~~~~~li~-----------~~~~~g~~~~a~~~~~~m-~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~  183 (305)
                      |...++.-.. ...|--+..           .+.....+....++|-++ ...+..+|......|--.|--.|.+++|..
T Consensus       372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD  451 (579)
T KOG1125|consen  372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD  451 (579)
T ss_pred             HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence            7777765522 111111111           112222344555566555 444545777778888888889999999999


Q ss_pred             HHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--Cc-hhhHHHHHHHHHhcCChHHHHHHHHHH---HHC
Q 036263          184 MHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RT-LVSWNSIIVGFAVNGFVGEALEYFNLM---QKG  257 (305)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m---~~~  257 (305)
                      .|+.....+ +-|..+||-|.-.+....+..+|+.-|++..+  |+ +.....|.-+|...|.+++|.+.|-..   .+.
T Consensus       452 cf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  452 CFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             HHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            999999876 67789999999999999999999999999984  53 467777888999999999999987664   333


Q ss_pred             ------CCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 036263          258 ------VFKTDEVSFTGALTACSHAGLIEDGLQY  285 (305)
Q Consensus       258 ------g~~p~~~~~~~li~~~~~~g~~~~a~~~  285 (305)
                            +..++...|..|=.++.-.++.|.+.+.
T Consensus       531 s~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a  564 (579)
T KOG1125|consen  531 SRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA  564 (579)
T ss_pred             ccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence                  1223445677766677777777755544

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.91  E-value=0.00032  Score=53.60  Aligned_cols=98  Identities=15%  Similarity=0.169  Sum_probs=77.6

Q ss_pred             cccHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCc----------------CChhHHHHHH
Q 036263          127 CDFWTALLNGFVK-----RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANV----------------RTLGIGLWMH  185 (305)
Q Consensus       127 ~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----------------~~~~~a~~~~  185 (305)
                      ..+|..++..+.+     .|..+-....++.|.+-|+.-|..+|+.|++.+-+.                .+.+-|.+++
T Consensus        47 K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL  126 (228)
T PF06239_consen   47 KATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLL  126 (228)
T ss_pred             HHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHH
Confidence            5566667766654     477888888999999999999999999999998653                2346789999


Q ss_pred             HHHhhcCCCCChhHHHHHHHHHHhcCC-hHHHHHHHHhcc
Q 036263          186 RYVPKQDFKDNVRVCNTLMDVYSRFGC-IEFARQVFQRMH  224 (305)
Q Consensus       186 ~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~  224 (305)
                      ++|+..|+-||..++..+++.+++.+. ..+..++.-.|.
T Consensus       127 ~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp  166 (228)
T PF06239_consen  127 EQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP  166 (228)
T ss_pred             HHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            999999999999999999999987665 334444444443

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.89  E-value=0.0066  Score=47.56  Aligned_cols=174  Identities=7%  Similarity=0.027  Sum_probs=127.1

Q ss_pred             CChHHHHHHHHhcCc-----------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHhcCcCChh
Q 036263          112 GRMDLATVVFDVMRG-----------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVL-NVCANVRTLG  179 (305)
Q Consensus       112 g~~~~a~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~  179 (305)
                      .+.++..+++..+..           -..|..++-+....|+.+.|...++++..+ + |.+.-...+= --+-..|+++
T Consensus        26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~  103 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYK  103 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchh
Confidence            345555555555533           112555667777889999999999998876 3 5433322222 2234678999


Q ss_pred             HHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263          180 IGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQK  256 (305)
Q Consensus       180 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  256 (305)
                      +|.++++.+.+.+ +.|..++---+-..-..|+--+|.+-+.+..+   .|...|.-+-..|...|++++|.-.++++.-
T Consensus       104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll  182 (289)
T KOG3060|consen  104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL  182 (289)
T ss_pred             hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence            9999999999987 77888888777777788888888888887775   4889999999999999999999999999988


Q ss_pred             CCCCC-CHHHHHHHHHHHhccC---cHHHHHHHHHHHH
Q 036263          257 GVFKT-DEVSFTGALTACSHAG---LIEDGLQYFDIMK  290 (305)
Q Consensus       257 ~g~~p-~~~~~~~li~~~~~~g---~~~~a~~~~~~m~  290 (305)
                      .  .| +...|..+...+--.|   +.+.+.++|....
T Consensus       183 ~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al  218 (289)
T KOG3060|consen  183 I--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL  218 (289)
T ss_pred             c--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            4  45 4455555555544333   5667777777666

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.88  E-value=0.016  Score=51.35  Aligned_cols=26  Identities=19%  Similarity=0.505  Sum_probs=20.4

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHH
Q 036263          130 WTALLNGFVKRDYFEEALEYFRVMQI  155 (305)
Q Consensus       130 ~~~li~~~~~~g~~~~a~~~~~~m~~  155 (305)
                      |++|...|.+.|.++.|.++|++-..
T Consensus       251 w~SLAdYYIr~g~~ekarDvyeeai~  276 (835)
T KOG2047|consen  251 WCSLADYYIRSGLFEKARDVYEEAIQ  276 (835)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            77888888888888888888877554

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.85  E-value=0.0059  Score=54.98  Aligned_cols=200  Identities=12%  Similarity=0.080  Sum_probs=141.0

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHH-H
Q 036263           96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV-L  169 (305)
Q Consensus        96 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l-l  169 (305)
                      .+..+|..|--+..+.|+++.+-+.|++...     ...|+.+-..+...|.-..|..++++-....-.|+..+--.+ -
T Consensus       321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas  400 (799)
T KOG4162|consen  321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS  400 (799)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence            6888999999999999999999999998855     556999999999999999999999875543323543333333 3


Q ss_pred             HHh-cCcCChhHHHHHHHHHhh--cCC--CCChhHHHHHHHHHHhcC-----------ChHHHHHHHHhcccC---chhh
Q 036263          170 NVC-ANVRTLGIGLWMHRYVPK--QDF--KDNVRVCNTLMDVYSRFG-----------CIEFARQVFQRMHKR---TLVS  230 (305)
Q Consensus       170 ~~~-~~~~~~~~a~~~~~~~~~--~~~--~~~~~~~~~li~~~~~~g-----------~~~~a~~~~~~~~~~---~~~~  230 (305)
                      ..| .+.+..+++..+-.+...  .+.  ......|..+.-+|...-           ...++.+.+++..+.   |...
T Consensus       401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~  480 (799)
T KOG4162|consen  401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV  480 (799)
T ss_pred             HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence            333 345667777776666554  111  223445555555554321           234566777776532   2222


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCC
Q 036263          231 WNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRV  295 (305)
Q Consensus       231 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  295 (305)
                      .-.+---|+..++.+.|.+..++..+.+-.-+...|..+...+.-.+++.+|+.+.+....++|.
T Consensus       481 if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~  545 (799)
T KOG4162|consen  481 IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD  545 (799)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Confidence            22233346778899999999999998866678899999999999999999999999988766665

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.84  E-value=0.004  Score=49.94  Aligned_cols=238  Identities=13%  Similarity=0.066  Sum_probs=141.6

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHH-----HHHHh---------hcCCCC-CChhHHHHHHHHH
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFV-----TLLSG---------CADFPS-NNVMVSTALLDMY  108 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-----~ll~~---------~~~~~~-~~~~~~~~ll~~~  108 (305)
                      +......+-.+|-...++..|-+.|+++..  ..|...-|.     ++-.+         ....++ +....-..-+.+.
T Consensus        43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaA  120 (459)
T KOG4340|consen   43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAA  120 (459)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            667777788888888999999998888765  344433221     11111         111111 1111111111222


Q ss_pred             --HhcCChHHHHHHHHhcCc---cccHHHHHHHHHcCCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHhcCcCChhHHH
Q 036263          109 --AKFGRMDLATVVFDVMRG---CDFWTALLNGFVKRDYFEEALEYFRVMQIS-GVEPDYLTIISVLNVCANVRTLGIGL  182 (305)
Q Consensus       109 --~~~g~~~~a~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~  182 (305)
                        -..+++..+..+.++.+.   ..+.+...-...+.|+++.|.+-|+...+- |..| ...|+..+. ..+.|+.+.|.
T Consensus       121 IkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALa-Hy~~~qyasAL  198 (459)
T KOG4340|consen  121 IKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALA-HYSSRQYASAL  198 (459)
T ss_pred             HhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHH-HHhhhhHHHHH
Confidence              234677777788888875   333444444456789999999999887664 5554 456766554 45678888999


Q ss_pred             HHHHHHhhcCCC-------------CChh--------HHHHHHHH-------HHhcCChHHHHHHHHhccc-----Cchh
Q 036263          183 WMHRYVPKQDFK-------------DNVR--------VCNTLMDV-------YSRFGCIEFARQVFQRMHK-----RTLV  229 (305)
Q Consensus       183 ~~~~~~~~~~~~-------------~~~~--------~~~~li~~-------~~~~g~~~~a~~~~~~~~~-----~~~~  229 (305)
                      +...+++++|++             ||+.        +-+.++.+       +.+.|+++.|.+-+-.|+.     .|.+
T Consensus       199 k~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPv  278 (459)
T KOG4340|consen  199 KHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPV  278 (459)
T ss_pred             HHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCch
Confidence            988888887653             1211        11233333       4567889999999988873     2555


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 036263          230 SWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFD  287 (305)
Q Consensus       230 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~  287 (305)
                      |.+.+.-.= ..+++.+..+-+.-+.+.+. ....||..++--||+..-++.|-.++-
T Consensus       279 TLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLA  334 (459)
T KOG4340|consen  279 TLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLA  334 (459)
T ss_pred             hhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence            555543221 23445555555555555432 345677777777777777777766654

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.83  E-value=0.00062  Score=55.78  Aligned_cols=139  Identities=12%  Similarity=0.085  Sum_probs=80.3

Q ss_pred             cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHH
Q 036263          129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNV-CANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY  207 (305)
Q Consensus       129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  207 (305)
                      +|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|..-++.+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence            46666777777777777777777766432 1122233322222 22345566677777777665 455666677777777


Q ss_pred             HhcCChHHHHHHHHhcccC------chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036263          208 SRFGCIEFARQVFQRMHKR------TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT  271 (305)
Q Consensus       208 ~~~g~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~  271 (305)
                      .+.|+.+.|..+|++....      ....|...+.-=.+.|+.+.+.++.+++.+.  -|+...+..++.
T Consensus        81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~  148 (280)
T PF05843_consen   81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD  148 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred             HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence            7777777777777776531      2346777777767777777777777777663  344344444443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.80  E-value=0.02  Score=55.32  Aligned_cols=224  Identities=11%  Similarity=0.066  Sum_probs=145.7

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc------
Q 036263           53 SRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG------  126 (305)
Q Consensus        53 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------  126 (305)
                      ..+...|++++|...+++..+.  .|....+...            ...+.+...+...|++++|...+++...      
T Consensus       460 ~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~------------~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g  525 (903)
T PRK04841        460 QVAINDGDPEEAERLAELALAE--LPLTWYYSRI------------VATSVLGEVHHCKGELARALAMMQQTEQMARQHD  525 (903)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhc--CCCccHHHHH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc
Confidence            4456789999999999988763  1221111111            1234555667789999999999887753      


Q ss_pred             -----cccHHHHHHHHHcCCChHHHHHHHHHHHH----cCCC--C-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcC--
Q 036263          127 -----CDFWTALLNGFVKRDYFEEALEYFRVMQI----SGVE--P-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQD--  192 (305)
Q Consensus       127 -----~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--  192 (305)
                           ...+..+...+...|+++.|...+++...    .|..  | ....+..+...+...|++++|...+++.....  
T Consensus       526 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~  605 (903)
T PRK04841        526 VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSN  605 (903)
T ss_pred             chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhc
Confidence                 22345566778889999999999887654    2221  1 23334455556777899999999988775421  


Q ss_pred             CCC--ChhHHHHHHHHHHhcCChHHHHHHHHhccc----Cc-hhhH-----HHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 036263          193 FKD--NVRVCNTLMDVYSRFGCIEFARQVFQRMHK----RT-LVSW-----NSIIVGFAVNGFVGEALEYFNLMQKGVFK  260 (305)
Q Consensus       193 ~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~-~~~~-----~~li~~~~~~g~~~~a~~~~~~m~~~g~~  260 (305)
                      ..+  ....+..+...+...|+.++|.+.+++...    .. ...+     ...+..+...|+.+.|..++.........
T Consensus       606 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~  685 (903)
T PRK04841        606 YQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFA  685 (903)
T ss_pred             cCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCc
Confidence            112  234455566778899999999998888752    11 1111     11224456689999999998775542211


Q ss_pred             CCH---HHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          261 TDE---VSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       261 p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      ...   ..+..+..++...|++++|...++...
T Consensus       686 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al  718 (903)
T PRK04841        686 NNHFLQGQWRNIARAQILLGQFDEAEIILEELN  718 (903)
T ss_pred             cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            111   123456677888999999999999876

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.79  E-value=0.00059  Score=45.02  Aligned_cols=90  Identities=14%  Similarity=0.166  Sum_probs=60.1

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 036263          200 CNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA  276 (305)
Q Consensus       200 ~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~  276 (305)
                      +..+...+...|++++|...+++..+  | +...+..+...+...|++++|.+.++.....+ +.+..++..+...+...
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence            44555666667777777777776653  2 33556666777777777788887777766643 22335666777777777


Q ss_pred             CcHHHHHHHHHHHH
Q 036263          277 GLIEDGLQYFDIMK  290 (305)
Q Consensus       277 g~~~~a~~~~~~m~  290 (305)
                      |+++.|...++...
T Consensus        82 ~~~~~a~~~~~~~~   95 (100)
T cd00189          82 GKYEEALEAYEKAL   95 (100)
T ss_pred             HhHHHHHHHHHHHH
Confidence            88888877777665

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.78  E-value=0.0031  Score=56.65  Aligned_cols=131  Identities=15%  Similarity=0.158  Sum_probs=75.7

Q ss_pred             HcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 036263          138 VKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR  217 (305)
Q Consensus       138 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  217 (305)
                      .....|.+|+.+++.+.....  -+.-|..+.+.|...|+++.|+++|-+.         ..++-.|.+|.+.|+++.|.
T Consensus       743 i~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~  811 (1636)
T KOG3616|consen  743 IGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAF  811 (1636)
T ss_pred             hhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHH
Confidence            344556666666665554322  2233566666777777777777766432         12444566777777777777


Q ss_pred             HHHHhcccC--chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 036263          218 QVFQRMHKR--TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI  288 (305)
Q Consensus       218 ~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  288 (305)
                      ++-.+...|  ....|-.-..-.-.+|++.+|.++|-....    |+     ..|..|-+.|..++.+.+.+.
T Consensus       812 kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k  875 (1636)
T KOG3616|consen  812 KLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEK  875 (1636)
T ss_pred             HHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHH
Confidence            776666654  333444444445666777776666543322    43     345666677777776666553

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.77  E-value=0.02  Score=49.08  Aligned_cols=158  Identities=8%  Similarity=-0.069  Sum_probs=89.7

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH--HHH----HHHH----HhcCcCChhHHHHHHHHHhhcCCCCChhH
Q 036263          130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL--TII----SVLN----VCANVRTLGIGLWMHRYVPKQDFKDNVRV  199 (305)
Q Consensus       130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~----~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  199 (305)
                      |-..++.-...|+.+...++|++.... ++|-..  -|.    ..|+    .-....+++.+.++++...+. ++-..+|
T Consensus       325 WfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFt  402 (677)
T KOG1915|consen  325 WFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFT  402 (677)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccch
Confidence            444444445556666666666554432 333110  010    1111    112345556666666655552 2323333


Q ss_pred             HHHH----HHHHHhcCChHHHHHHHHhccc--CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036263          200 CNTL----MDVYSRFGCIEFARQVFQRMHK--RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC  273 (305)
Q Consensus       200 ~~~l----i~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~  273 (305)
                      +.-+    ...-.+..++..|.+++.....  |-..+|-..|..-.+.+++|.+..++++..+.+ +-|..+|.....-=
T Consensus       403 FaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE  481 (677)
T KOG1915|consen  403 FAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELE  481 (677)
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHH
Confidence            3332    2223345666667666666552  555667777777777888888888888888754 22556777666666


Q ss_pred             hccCcHHHHHHHHHHHH
Q 036263          274 SHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       274 ~~~g~~~~a~~~~~~m~  290 (305)
                      ...|+.|.|..+|+-..
T Consensus       482 ~~LgdtdRaRaifelAi  498 (677)
T KOG1915|consen  482 TSLGDTDRARAIFELAI  498 (677)
T ss_pred             HHhhhHHHHHHHHHHHh
Confidence            67788888888888665

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.75  E-value=0.00059  Score=52.17  Aligned_cols=105  Identities=13%  Similarity=0.188  Sum_probs=80.3

Q ss_pred             CCCHHHHHHHHHHhc-----CcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHH
Q 036263          159 EPDYLTIISVLNVCA-----NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNS  233 (305)
Q Consensus       159 ~p~~~t~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  233 (305)
                      .-+..+|..+++.+.     +.|.++=....++.|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+          
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~----------  111 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE----------  111 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH----------
Confidence            557788888888875     457788888889999999999999999999999876 4432 22222222          


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 036263          234 IIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL  278 (305)
Q Consensus       234 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  278 (305)
                       .--|  -.+.+-|++++++|...|+-||..|+..+++.|.+.+.
T Consensus       112 -F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  112 -FMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             -hccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence             1111  23467899999999999999999999999999977653

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.71  E-value=0.0032  Score=56.05  Aligned_cols=139  Identities=8%  Similarity=-0.064  Sum_probs=95.8

Q ss_pred             CCCCHHHHHHHHHHhcCc-----CChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc--------CChHHHHHHHHhcc
Q 036263          158 VEPDYLTIISVLNVCANV-----RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF--------GCIEFARQVFQRMH  224 (305)
Q Consensus       158 ~~p~~~t~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~a~~~~~~~~  224 (305)
                      ...+...|...+.+....     ++...|..+|++..+.. +-....|..+..+|...        .++..+.+..++..
T Consensus       333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            345678888888875432     33668889999988875 34455555544444322        12334444444422


Q ss_pred             -----cCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCc
Q 036263          225 -----KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQI  299 (305)
Q Consensus       225 -----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~  299 (305)
                           ..+...|..+.......|++++|...+++....+  |+...|..+.+.+...|+.++|.+.+++..   .+.|..
T Consensus       412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~---~L~P~~  486 (517)
T PRK10153        412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAF---NLRPGE  486 (517)
T ss_pred             hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCCC
Confidence                 1244677777667777899999999999998854  788889999999999999999999998877   666665


Q ss_pred             ccc
Q 036263          300 EHH  302 (305)
Q Consensus       300 ~~y  302 (305)
                      .+|
T Consensus       487 pt~  489 (517)
T PRK10153        487 NTL  489 (517)
T ss_pred             chH
Confidence            554

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.71  E-value=0.0019  Score=48.85  Aligned_cols=88  Identities=11%  Similarity=0.027  Sum_probs=56.9

Q ss_pred             cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 036263          129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPD--YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV  206 (305)
Q Consensus       129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  206 (305)
                      .+..+...+...|++++|...|++..+....+.  ...+..+...+.+.|++++|...+++..+.. +-+...+..+..+
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~  115 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI  115 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence            456666677777777777777777665432222  3566677777777788888888777777653 3345556666666


Q ss_pred             HHhcCChHHHH
Q 036263          207 YSRFGCIEFAR  217 (305)
Q Consensus       207 ~~~~g~~~~a~  217 (305)
                      |...|+...+.
T Consensus       116 ~~~~g~~~~a~  126 (172)
T PRK02603        116 YHKRGEKAEEA  126 (172)
T ss_pred             HHHcCChHhHh
Confidence            76666654443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.70  E-value=0.0026  Score=51.03  Aligned_cols=190  Identities=10%  Similarity=0.004  Sum_probs=130.7

Q ss_pred             HHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHHhcCc
Q 036263          102 TALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIIS-VLNVCANV  175 (305)
Q Consensus       102 ~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~  175 (305)
                      ++.+..+.+..++++|.+++..-.+     ......|..+|-...++..|-..++++..  ..|...-|.. -...+.+.
T Consensus        14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY~A   91 (459)
T KOG4340|consen   14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLYKA   91 (459)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHHh
Confidence            3444446677788888887765533     33466777888888888888888888765  3565555542 23456677


Q ss_pred             CChhHHHHHHHHHhhcCCCCChhHHHHHHHH--HHhcCChHHHHHHHHhcc-cCchhhHHHHHHHHHhcCChHHHHHHHH
Q 036263          176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV--YSRFGCIEFARQVFQRMH-KRTLVSWNSIIVGFAVNGFVGEALEYFN  252 (305)
Q Consensus       176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~  252 (305)
                      +.+..|.++...|...   ++...-..-+.+  ....+++..+..++++.. +.+..+.+.......+.|+++.|.+-|+
T Consensus        92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq  168 (459)
T KOG4340|consen   92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ  168 (459)
T ss_pred             cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence            7888888888777543   222222222222  235678888888888888 3566666666666778999999999999


Q ss_pred             HHHHC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCc
Q 036263          253 LMQKG-VFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQI  299 (305)
Q Consensus       253 ~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~  299 (305)
                      ...+. |+.| ...|+..+ +..+.|+++.|+++..++. ..|++-.+
T Consensus       169 aAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIi-eRG~r~HP  213 (459)
T KOG4340|consen  169 AALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEII-ERGIRQHP  213 (459)
T ss_pred             HHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHH-HhhhhcCC
Confidence            97765 5655 46776654 4456689999999999999 77876443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.69  E-value=0.001  Score=46.57  Aligned_cols=93  Identities=11%  Similarity=-0.058  Sum_probs=43.4

Q ss_pred             HHHHHHHhcCcCChhHHHHHHHHHhhcCC--CCChhHHHHHHHHHHhcCChHHHHHHHHhccc--Cc----hhhHHHHHH
Q 036263          165 IISVLNVCANVRTLGIGLWMHRYVPKQDF--KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RT----LVSWNSIIV  236 (305)
Q Consensus       165 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~li~  236 (305)
                      +..+...+.+.|++++|...++.+.+..-  +.....+..+..++.+.|++++|...|+.+..  |+    ...+..+..
T Consensus         5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~   84 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM   84 (119)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence            33444444555555555555555544321  00123344455555555555555555555442  21    223444444


Q ss_pred             HHHhcCChHHHHHHHHHHHHC
Q 036263          237 GFAVNGFVGEALEYFNLMQKG  257 (305)
Q Consensus       237 ~~~~~g~~~~a~~~~~~m~~~  257 (305)
                      ++...|++++|...++++.+.
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        85 SLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHhCChHHHHHHHHHHHHH
Confidence            555555555555555555443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.67  E-value=0.0007  Score=44.66  Aligned_cols=90  Identities=19%  Similarity=0.160  Sum_probs=42.1

Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc
Q 036263          131 TALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF  210 (305)
Q Consensus       131 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  210 (305)
                      ..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++...+.. +.+...+..+...+...
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence            334444555555555555555554321 1122344444444555555555555555544433 22233444444444445


Q ss_pred             CChHHHHHHHHh
Q 036263          211 GCIEFARQVFQR  222 (305)
Q Consensus       211 g~~~~a~~~~~~  222 (305)
                      |+.++|...+.+
T Consensus        82 ~~~~~a~~~~~~   93 (100)
T cd00189          82 GKYEEALEAYEK   93 (100)
T ss_pred             HhHHHHHHHHHH
Confidence            555555444443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.66  E-value=0.0011  Score=56.43  Aligned_cols=84  Identities=6%  Similarity=-0.104  Sum_probs=45.6

Q ss_pred             hcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHH
Q 036263          172 CANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEAL  248 (305)
Q Consensus       172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~  248 (305)
                      +...|++++|...+++.++.. +.+...|..+..+|.+.|++++|...+++..+  | +...|..+..+|...|++++|.
T Consensus        12 a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~   90 (356)
T PLN03088         12 AFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK   90 (356)
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence            344455555555555555543 33445555555555555666666555555542  2 3445555555555666666666


Q ss_pred             HHHHHHHH
Q 036263          249 EYFNLMQK  256 (305)
Q Consensus       249 ~~~~~m~~  256 (305)
                      ..|++..+
T Consensus        91 ~~~~~al~   98 (356)
T PLN03088         91 AALEKGAS   98 (356)
T ss_pred             HHHHHHHH
Confidence            66665555

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.65  E-value=0.0062  Score=50.03  Aligned_cols=117  Identities=11%  Similarity=0.139  Sum_probs=50.1

Q ss_pred             HHHHHHhcCChHHHHHHHHhcCc-----------cccHHHHHHHHHcCCChHHHHHHHHHHHH----cCCCCC--HHHHH
Q 036263          104 LLDMYAKFGRMDLATVVFDVMRG-----------CDFWTALLNGFVKRDYFEEALEYFRVMQI----SGVEPD--YLTII  166 (305)
Q Consensus       104 ll~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~--~~t~~  166 (305)
                      ....|...|++++|...|.+...           ...|......+.+. ++++|.+.+++..+    .| .|+  ...+.
T Consensus        41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~  118 (282)
T PF14938_consen   41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLK  118 (282)
T ss_dssp             HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHH
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHH
Confidence            33445556666666666655422           12233333333333 55555555544322    12 222  22344


Q ss_pred             HHHHHhcCc-CChhHHHHHHHHHhhc----CCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhc
Q 036263          167 SVLNVCANV-RTLGIGLWMHRYVPKQ----DFKDN--VRVCNTLMDVYSRFGCIEFARQVFQRM  223 (305)
Q Consensus       167 ~ll~~~~~~-~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~  223 (305)
                      .+...|... |+++.|.+.|++..+.    | .+.  ..++..+...+.+.|++++|.++|+++
T Consensus       119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~  181 (282)
T PF14938_consen  119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEV  181 (282)
T ss_dssp             HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            444445554 5555555555544321    1 111  223344445555555555555555544

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.65  E-value=0.0017  Score=53.25  Aligned_cols=192  Identities=13%  Similarity=0.077  Sum_probs=125.2

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc---
Q 036263           50 SSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG---  126 (305)
Q Consensus        50 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---  126 (305)
                      .++-.|.+.+++++|..+..++     .|... |-.++.+         .++.++..-.....++.-|++.|+-.-+   
T Consensus       290 NL~iYyL~q~dVqeA~~L~Kdl-----~PttP-~EyilKg---------vv~aalGQe~gSreHlKiAqqffqlVG~Sa~  354 (557)
T KOG3785|consen  290 NLIIYYLNQNDVQEAISLCKDL-----DPTTP-YEYILKG---------VVFAALGQETGSREHLKIAQQFFQLVGESAL  354 (557)
T ss_pred             hheeeecccccHHHHHHHHhhc-----CCCCh-HHHHHHH---------HHHHHhhhhcCcHHHHHHHHHHHHHhccccc
Confidence            3455677889999998887765     33211 2223332         1222222223333455667777766643   


Q ss_pred             ----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHH-H
Q 036263          127 ----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC-N  201 (305)
Q Consensus       127 ----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~  201 (305)
                          ..---++.+.+.-..++++++.+++..+..=..-|..-| .+..+.+..|...+|+++|-......++ |..+| .
T Consensus       355 ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s  432 (557)
T KOG3785|consen  355 ECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKS  432 (557)
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHH
Confidence                112455667777777889999888887765333333333 4678888999999999999877655543 44555 5


Q ss_pred             HHHHHHHhcCChHHHHHHHHhcccCch-h-hHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 036263          202 TLMDVYSRFGCIEFARQVFQRMHKRTL-V-SWNSIIVGFAVNGFVGEALEYFNLMQKGV  258 (305)
Q Consensus       202 ~li~~~~~~g~~~~a~~~~~~~~~~~~-~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g  258 (305)
                      .|.++|.++++++-|+.++-++..|.. . ....+..-|.+.+.+--|.+.|+.+...+
T Consensus       433 ~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD  491 (557)
T KOG3785|consen  433 MLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD  491 (557)
T ss_pred             HHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence            567899999999999999988876532 2 23344566788888888888888887754

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.64  E-value=0.0004  Score=45.54  Aligned_cols=20  Identities=20%  Similarity=0.250  Sum_probs=8.3

Q ss_pred             HHHHHHhcCChHHHHHHHHH
Q 036263          234 IIVGFAVNGFVGEALEYFNL  253 (305)
Q Consensus       234 li~~~~~~g~~~~a~~~~~~  253 (305)
                      +..+|.+.|++++|..++++
T Consensus        31 la~~~~~~~~y~~A~~~~~~   50 (84)
T PF12895_consen   31 LAQCYFQQGKYEEAIELLQK   50 (84)
T ss_dssp             HHHHHHHTTHHHHHHHHHHC
T ss_pred             HHHHHHHCCCHHHHHHHHHH
Confidence            33444444444444444433

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.64  E-value=0.0027  Score=44.37  Aligned_cols=91  Identities=14%  Similarity=-0.015  Sum_probs=43.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhccc--Cc----hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHH
Q 036263          200 CNTLMDVYSRFGCIEFARQVFQRMHK--RT----LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK--TDEVSFTGALT  271 (305)
Q Consensus       200 ~~~li~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~li~  271 (305)
                      +..+...+.+.|++++|.+.|+.+.+  |+    ...+..+..++...|+++.|...|+.+......  .....+..+..
T Consensus         5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~   84 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM   84 (119)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence            34444455555555555555555542  11    123344555555555555555555555442111  11233444445


Q ss_pred             HHhccCcHHHHHHHHHHHH
Q 036263          272 ACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       272 ~~~~~g~~~~a~~~~~~m~  290 (305)
                      ++.+.|++++|...++.+.
T Consensus        85 ~~~~~~~~~~A~~~~~~~~  103 (119)
T TIGR02795        85 SLQELGDKEKAKATLQQVI  103 (119)
T ss_pred             HHHHhCChHHHHHHHHHHH
Confidence            5555555555555555555

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.63  E-value=0.00014  Score=47.73  Aligned_cols=78  Identities=14%  Similarity=0.034  Sum_probs=37.6

Q ss_pred             CChhHHHHHHHHHhhcCCC-CChhHHHHHHHHHHhcCChHHHHHHHHhcc--cCchhhHHHHHHHHHhcCChHHHHHHHH
Q 036263          176 RTLGIGLWMHRYVPKQDFK-DNVRVCNTLMDVYSRFGCIEFARQVFQRMH--KRTLVSWNSIIVGFAVNGFVGEALEYFN  252 (305)
Q Consensus       176 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~  252 (305)
                      |+++.|..+++.+.+.... ++...+..+..+|.+.|++++|..++++..  ..+....-.+..+|...|++++|.++++
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~   82 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE   82 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            4555555555555554321 123333445556666666666666665521  1222333344555556666666666554


Q ss_pred             H
Q 036263          253 L  253 (305)
Q Consensus       253 ~  253 (305)
                      +
T Consensus        83 ~   83 (84)
T PF12895_consen   83 K   83 (84)
T ss_dssp             H
T ss_pred             c
Confidence            3

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.63  E-value=0.021  Score=45.25  Aligned_cols=147  Identities=14%  Similarity=0.093  Sum_probs=93.2

Q ss_pred             HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHh----
Q 036263          134 LNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR----  209 (305)
Q Consensus       134 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----  209 (305)
                      ...|+..|++++|++..+...    ..+.  ...=+..+.+..+++-|.+.++.|.+-.   +..+.+-|..++.+    
T Consensus       115 a~i~~~~~~~deAl~~~~~~~----~lE~--~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g  185 (299)
T KOG3081|consen  115 AIIYMHDGDFDEALKALHLGE----NLEA--AALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG  185 (299)
T ss_pred             hHHhhcCCChHHHHHHHhccc----hHHH--HHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence            356778888888888876521    1222  2222334457778888888888887643   44555555555543    


Q ss_pred             cCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-HHHHHHH
Q 036263          210 FGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL-IEDGLQY  285 (305)
Q Consensus       210 ~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~  285 (305)
                      .+...+|.-+|++|.+   |+..+.+-...++...|++++|..++++...... -++.|..-++-+-...|. .+-..+.
T Consensus       186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpetL~Nliv~a~~~Gkd~~~~~r~  264 (299)
T KOG3081|consen  186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPETLANLIVLALHLGKDAEVTERN  264 (299)
T ss_pred             chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCCChHHHHHH
Confidence            4568888888888875   5666666677778888888888888888877642 345555555444444443 3444455


Q ss_pred             HHHHH
Q 036263          286 FDIMK  290 (305)
Q Consensus       286 ~~~m~  290 (305)
                      +..++
T Consensus       265 l~QLk  269 (299)
T KOG3081|consen  265 LSQLK  269 (299)
T ss_pred             HHHHH
Confidence            55555

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.62  E-value=0.0022  Score=52.53  Aligned_cols=123  Identities=13%  Similarity=0.115  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhcCc--ccc---HHHHHHH-HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 036263          100 VSTALLDMYAKFGRMDLATVVFDVMRG--CDF---WTALLNG-FVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCA  173 (305)
Q Consensus       100 ~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~---~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~  173 (305)
                      +|..++....+.+.++.|..+|.+...  ..+   |-..... +...++.+.|..+|+...+. +..+...|..-++-+.
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~   81 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI   81 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence            455555555555555555555555543  111   2111111 11133444455555554443 2334444444455555


Q ss_pred             CcCChhHHHHHHHHHhhcCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263          174 NVRTLGIGLWMHRYVPKQDFKDNV---RVCNTLMDVYSRFGCIEFARQVFQRMH  224 (305)
Q Consensus       174 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~  224 (305)
                      +.++.+.|..+|+..... +.++.   ..|...++.=.+.|+++.+.++.+++.
T Consensus        82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~  134 (280)
T PF05843_consen   82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE  134 (280)
T ss_dssp             HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred             HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            555555555555555443 22211   355555555555555555555555554

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.57  E-value=0.051  Score=48.34  Aligned_cols=235  Identities=15%  Similarity=0.074  Sum_probs=136.4

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYG-TNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFD  122 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~  122 (305)
                      ....|-.+..+....|+...|..+++...+.. -.|+...|.....-.            --.....+.|..+.|.+.+.
T Consensus       142 ~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~L------------y~n~i~~E~g~~q~ale~L~  209 (700)
T KOG1156|consen  142 QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLL------------YQNQILIEAGSLQKALEHLL  209 (700)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHH------------HHHHHHHHcccHHHHHHHHH
Confidence            34678888888888999999999999988764 356666654433221            11222344555566555554


Q ss_pred             hcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc-CcCC-h-----------------
Q 036263          123 VMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCA-NVRT-L-----------------  178 (305)
Q Consensus       123 ~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~~~-~-----------------  178 (305)
                      .-..     ...-.+-...+.+.+++++|..++..+..+  .||..-|...+..+. +..+ .                 
T Consensus       210 ~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~  287 (700)
T KOG1156|consen  210 DNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH  287 (700)
T ss_pred             hhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence            4432     111222334455555666666666655553  344333332222111 0000 0                 


Q ss_pred             -----------------hHHHHHHHHHhhcCC----------------------------------------------CC
Q 036263          179 -----------------GIGLWMHRYVPKQDF----------------------------------------------KD  195 (305)
Q Consensus       179 -----------------~~a~~~~~~~~~~~~----------------------------------------------~~  195 (305)
                                       +....++..+.+.|+                                              +|
T Consensus       288 e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~P  367 (700)
T KOG1156|consen  288 ECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPP  367 (700)
T ss_pred             ccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCc
Confidence                             111111111112221                                              33


Q ss_pred             Chh--HHHHHHHHHHhcCChHHHHHHHHhcccCchh---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036263          196 NVR--VCNTLMDVYSRFGCIEFARQVFQRMHKRTLV---SWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL  270 (305)
Q Consensus       196 ~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li  270 (305)
                      ...  ++..+++.|-+.|+++.|...++.....+..   .|-.=.+.+...|++++|..++++.++.+ .||...-..-.
T Consensus       368 ttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcA  446 (700)
T KOG1156|consen  368 TTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCA  446 (700)
T ss_pred             hHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHH
Confidence            333  3445677788888888888888888764433   33333567888899999999999888764 35555555666


Q ss_pred             HHHhccCcHHHHHHHHHHHHHHhC
Q 036263          271 TACSHAGLIEDGLQYFDIMKKIYR  294 (305)
Q Consensus       271 ~~~~~~g~~~~a~~~~~~m~~~~~  294 (305)
                      +...+..+.++|.++..... +.|
T Consensus       447 KYmLrAn~i~eA~~~~skFT-r~~  469 (700)
T KOG1156|consen  447 KYMLRANEIEEAEEVLSKFT-REG  469 (700)
T ss_pred             HHHHHccccHHHHHHHHHhh-hcc
Confidence            77778888888888888776 444

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.55  E-value=0.0062  Score=42.68  Aligned_cols=107  Identities=16%  Similarity=0.045  Sum_probs=66.4

Q ss_pred             HHHHHHcCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCC--CChhHHHHHHHHHH
Q 036263          133 LLNGFVKRDYFEEALEYFRVMQISGVEPD--YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK--DNVRVCNTLMDVYS  208 (305)
Q Consensus       133 li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~  208 (305)
                      +..++-..|+.++|..+|++-...|...+  ...+-.+-.++...|++++|..+++......-.  .+......+..++.
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence            34556667888888888888777776554  334555666777778888888888777654211  12222223334666


Q ss_pred             hcCChHHHHHHHHhcccCchhhHHHHHHHHH
Q 036263          209 RFGCIEFARQVFQRMHKRTLVSWNSIIVGFA  239 (305)
Q Consensus       209 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~  239 (305)
                      ..|+.++|.+.+-....++...|.--|..|+
T Consensus        87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya  117 (120)
T PF12688_consen   87 NLGRPKEALEWLLEALAETLPRYRRAIRFYA  117 (120)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777787777776655555555555555554

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.55  E-value=0.029  Score=52.53  Aligned_cols=192  Identities=13%  Similarity=0.101  Sum_probs=136.5

Q ss_pred             CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC----------CChhHHHHHHHHHHhcC
Q 036263           43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----------NNVMVSTALLDMYAKFG  112 (305)
Q Consensus        43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------~~~~~~~~ll~~~~~~g  112 (305)
                      -|+..|--+++...+.|.+++.++.+.-.++....|...+  .++-++++.+.          |+......+.+-|...|
T Consensus      1131 dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~ 1208 (1666)
T KOG0985|consen 1131 DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEK 1208 (1666)
T ss_pred             CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhh
Confidence            3677888888888888888888887777777666666553  45666666666          66666677777777777


Q ss_pred             ChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcC
Q 036263          113 RMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD  192 (305)
Q Consensus       113 ~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~  192 (305)
                      .++.|.-+|....   -|..|...+...|+++.|.+.-+..      -+..||..+-.+|...+.+..|     +|....
T Consensus      1209 ~y~aAkl~y~~vS---N~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~ 1274 (1666)
T KOG0985|consen 1209 MYEAAKLLYSNVS---NFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLN 1274 (1666)
T ss_pred             hhHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCce
Confidence            7777777766543   4888888888889988887766543      3567899998999888877544     333444


Q ss_pred             CCCChhHHHHHHHHHHhcCChHHHHHHHHhcc---cCchhhHHHHHHHHHhcCChHHHHHHH
Q 036263          193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEYF  251 (305)
Q Consensus       193 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~  251 (305)
                      +...+.-..-++..|-..|-+++...+++...   ......|+.|.-.|.+- ++++..+-+
T Consensus      1275 iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl 1335 (1666)
T KOG0985|consen 1275 IIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHL 1335 (1666)
T ss_pred             EEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHH
Confidence            45556667788999999999999998888765   23556677666666554 344444433

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.53  E-value=0.0038  Score=46.96  Aligned_cols=79  Identities=8%  Similarity=-0.044  Sum_probs=42.8

Q ss_pred             cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 036263          129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEP--DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV  206 (305)
Q Consensus       129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  206 (305)
                      .|..+...+...|++++|...|++.......|  ...++..+-..+...|+.++|...++...+.. +.....+..+...
T Consensus        37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i  115 (168)
T CHL00033         37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI  115 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence            35555566666667777776666655432122  12355556666666666666666666665542 2223344444444


Q ss_pred             HH
Q 036263          207 YS  208 (305)
Q Consensus       207 ~~  208 (305)
                      +.
T Consensus       116 ~~  117 (168)
T CHL00033        116 CH  117 (168)
T ss_pred             HH
Confidence            44

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.49  E-value=0.035  Score=50.22  Aligned_cols=124  Identities=10%  Similarity=-0.096  Sum_probs=101.8

Q ss_pred             HHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc--cC-chhhHHHHHHHHHhc
Q 036263          165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH--KR-TLVSWNSIIVGFAVN  241 (305)
Q Consensus       165 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~  241 (305)
                      |......+.+.+..++|...+.+..+.. +.....|......+...|.+.+|.+.|....  +| ++.+-+++...+...
T Consensus       653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~  731 (799)
T KOG4162|consen  653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL  731 (799)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence            3345556677788888888888776664 5667778888888888999999999998876  44 668889999999999


Q ss_pred             CChHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          242 GFVGEALE--YFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       242 g~~~~a~~--~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      |+..-|..  ++.++.+.+ +.+...|-.+-..+-+.|+.+.|-+.|+...
T Consensus       732 G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~  781 (799)
T KOG4162|consen  732 GSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAAL  781 (799)
T ss_pred             CCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence            99888888  999999965 2467889999999999999999999999877

>PLN02789 farnesyltranstransferase

Probab=97.48  E-value=0.046  Score=45.67  Aligned_cols=180  Identities=13%  Similarity=0.026  Sum_probs=119.8

Q ss_pred             HHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCC--hh
Q 036263          108 YAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRD-YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRT--LG  179 (305)
Q Consensus       108 ~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~--~~  179 (305)
                      +...++.++|+.+.+++..     ..+|+.--..+...| ++++++..++++.+... -+..+|+..-..+.+.|.  .+
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~~  125 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAAN  125 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhhH
Confidence            4445677888888877744     334555555666667 57999999999887532 234455544333444454  36


Q ss_pred             HHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhc---CCh----HHHHH
Q 036263          180 IGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVN---GFV----GEALE  249 (305)
Q Consensus       180 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~---g~~----~~a~~  249 (305)
                      ++..+++.+.+.+ +-+..+|+.-.-++.+.|+++++.+.++++.+   .|...|+.....+.+.   |+.    ++..+
T Consensus       126 ~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~  204 (320)
T PLN02789        126 KELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELK  204 (320)
T ss_pred             HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence            7788888888876 66788999998999999999999999999985   3667777766555544   223    46777


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHhcc----CcHHHHHHHHHHHH
Q 036263          250 YFNLMQKGVFKTDEVSFTGALTACSHA----GLIEDGLQYFDIMK  290 (305)
Q Consensus       250 ~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~m~  290 (305)
                      +..++.... +-|...|+-+...+...    +...+|.+.+.+..
T Consensus       205 y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~  248 (320)
T PLN02789        205 YTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL  248 (320)
T ss_pred             HHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence            776776642 22445666655555552    34455766666654

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.45  E-value=0.01  Score=54.10  Aligned_cols=219  Identities=11%  Similarity=0.111  Sum_probs=118.4

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTRMRLY-GTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFD  122 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~  122 (305)
                      +...|..+.+.|.+.++++-|.-.+-.|... |..       . ++-..+.  ++ ..-....-.....|-+++|+.+|.
T Consensus       756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaR-------A-lR~a~q~--~~-e~eakvAvLAieLgMlEeA~~lYr  824 (1416)
T KOG3617|consen  756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGAR-------A-LRRAQQN--GE-EDEAKVAVLAIELGMLEEALILYR  824 (1416)
T ss_pred             hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHH-------H-HHHHHhC--Cc-chhhHHHHHHHHHhhHHHHHHHHH
Confidence            4455666666666666666666655555432 110       0 0000011  11 111222223455678888888887


Q ss_pred             hcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHh----------hcC
Q 036263          123 VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP----------KQD  192 (305)
Q Consensus       123 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~----------~~~  192 (305)
                      +-..   |..|=..|-..|.|++|+++-+.=-+  + .-..||..-...+-..++.+.|.+.|++.-          +..
T Consensus       825 ~ckR---~DLlNKlyQs~g~w~eA~eiAE~~DR--i-HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~  898 (1416)
T KOG3617|consen  825 QCKR---YDLLNKLYQSQGMWSEAFEIAETKDR--I-HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEY  898 (1416)
T ss_pred             HHHH---HHHHHHHHHhcccHHHHHHHHhhccc--e-ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhC
Confidence            7665   44444556667888888877654211  1 123355544555555666666666655421          110


Q ss_pred             ---------CCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 036263          193 ---------FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE  263 (305)
Q Consensus       193 ---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~  263 (305)
                               -..|...|......+-..|+.+.|..+|...+     -|-++++..|-.|+.++|-.+-++-      -|.
T Consensus       899 p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~VrI~C~qGk~~kAa~iA~es------gd~  967 (1416)
T KOG3617|consen  899 PKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMVRIKCIQGKTDKAARIAEES------GDK  967 (1416)
T ss_pred             hHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhheeeEeeccCchHHHHHHHhc------ccH
Confidence                     12345666666677777888888888887765     3445555555566666665554431      133


Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          264 VSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       264 ~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      ...-.|.+.|...|++.+|..+|-..+
T Consensus       968 AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  968 AACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            333345556666666666666555444

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.40  E-value=0.04  Score=43.66  Aligned_cols=141  Identities=9%  Similarity=0.001  Sum_probs=104.0

Q ss_pred             cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHH----
Q 036263          127 CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNT----  202 (305)
Q Consensus       127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----  202 (305)
                      ..+.+.++..+.-.|.+.-.+.++++..+..-+-+......+.+.-...|+.+.|...|+...+..-..+....+.    
T Consensus       177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~  256 (366)
T KOG2796|consen  177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM  256 (366)
T ss_pred             HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence            3446788888888899999999999998876556777788888888999999999999998876543444444433    


Q ss_pred             -HHHHHHhcCChHHHHHHHHhcccC---chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036263          203 -LMDVYSRFGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA  269 (305)
Q Consensus       203 -li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l  269 (305)
                       .-..|.-.+++.+|.+.+.++...   |...-|.=.-+..-.|+...|.+..+.|...  .|...+-+++
T Consensus       257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~  325 (366)
T KOG2796|consen  257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV  325 (366)
T ss_pred             hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence             334455677899999999888743   4455555444555578999999999999985  4555554433

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.40  E-value=0.012  Score=44.48  Aligned_cols=82  Identities=12%  Similarity=-0.001  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHH
Q 036263          162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN--VRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIV  236 (305)
Q Consensus       162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~  236 (305)
                      ...+..+...+...|++++|...+++..+....+.  ...+..+...+.+.|++++|...+++..+   .+...+..+..
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  114 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            45677777888899999999999999887543222  46788889999999999999999988874   24566666777


Q ss_pred             HHHhcCC
Q 036263          237 GFAVNGF  243 (305)
Q Consensus       237 ~~~~~g~  243 (305)
                      .+...|+
T Consensus       115 ~~~~~g~  121 (172)
T PRK02603        115 IYHKRGE  121 (172)
T ss_pred             HHHHcCC
Confidence            7777666

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.38  E-value=0.0084  Score=43.80  Aligned_cols=93  Identities=9%  Similarity=-0.069  Sum_probs=65.6

Q ss_pred             HHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHh
Q 036263          164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAV  240 (305)
Q Consensus       164 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~  240 (305)
                      ..-.+-.-+...|++++|..+|+.+...+ +.+..-|..|.-++-..|++++|...|.....   .|...+-.+..++..
T Consensus        37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~  115 (157)
T PRK15363         37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA  115 (157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence            33444445567788888888888777765 45566667777777777888888888777652   356677777777888


Q ss_pred             cCChHHHHHHHHHHHHC
Q 036263          241 NGFVGEALEYFNLMQKG  257 (305)
Q Consensus       241 ~g~~~~a~~~~~~m~~~  257 (305)
                      .|+.+.|.+-|+.....
T Consensus       116 lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        116 CDNVCYAIKALKAVVRI  132 (157)
T ss_pred             cCCHHHHHHHHHHHHHH
Confidence            88888888777766553

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.37  E-value=0.0053  Score=52.19  Aligned_cols=88  Identities=7%  Similarity=-0.017  Sum_probs=67.7

Q ss_pred             HHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh
Q 036263          135 NGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI  213 (305)
Q Consensus       135 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  213 (305)
                      ..+...|++++|++.|++..+.  .| +...|..+..++...|++++|...++.+.+.. +.+...|..+..+|...|++
T Consensus        10 ~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~   86 (356)
T PLN03088         10 KEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY   86 (356)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence            4556678888888888887764  34 46667777778888888888888888887765 45677788888888888888


Q ss_pred             HHHHHHHHhccc
Q 036263          214 EFARQVFQRMHK  225 (305)
Q Consensus       214 ~~a~~~~~~~~~  225 (305)
                      ++|...|++..+
T Consensus        87 ~eA~~~~~~al~   98 (356)
T PLN03088         87 QTAKAALEKGAS   98 (356)
T ss_pred             HHHHHHHHHHHH
Confidence            888888888763

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.36  E-value=0.0056  Score=44.81  Aligned_cols=72  Identities=15%  Similarity=0.163  Sum_probs=48.8

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH----HhCCCCCccc
Q 036263          229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK----IYRVSPQIEH  301 (305)
Q Consensus       229 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~  301 (305)
                      .+...++..+...|++++|..+.+.+.... +.|...|..++.++...|+...|.++|+.+.+    +.|+.|+..+
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            355566777778888888888888887753 34677888888888888888888888877643    4688887654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.34  E-value=0.0037  Score=47.00  Aligned_cols=92  Identities=10%  Similarity=-0.065  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHH
Q 036263          162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD--NVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIV  236 (305)
Q Consensus       162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~  236 (305)
                      ...+..+...+...|++++|...++........+  ...++..+...|...|++++|...+++...  | ...++..+..
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~  114 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV  114 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            4455666666777788888888888776543222  234677777778888888888888877653  2 2344444444


Q ss_pred             HHH-------hcCChHHHHHHHHH
Q 036263          237 GFA-------VNGFVGEALEYFNL  253 (305)
Q Consensus       237 ~~~-------~~g~~~~a~~~~~~  253 (305)
                      .+.       ..|+++.|...+++
T Consensus       115 i~~~~~~~~~~~g~~~~A~~~~~~  138 (168)
T CHL00033        115 ICHYRGEQAIEQGDSEIAEAWFDQ  138 (168)
T ss_pred             HHHHhhHHHHHcccHHHHHHHHHH
Confidence            444       66666655555444

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.31  E-value=0.0013  Score=40.93  Aligned_cols=49  Identities=14%  Similarity=0.166  Sum_probs=23.2

Q ss_pred             cCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263          175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH  224 (305)
Q Consensus       175 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  224 (305)
                      .|++++|.++++.+.+.. +-+...+..+..+|.+.|++++|.++++++.
T Consensus         4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~   52 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLL   52 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred             ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            344455555555544443 3344444445555555555555555555544

...

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.29  E-value=0.015  Score=47.88  Aligned_cols=27  Identities=15%  Similarity=0.137  Sum_probs=14.7

Q ss_pred             hHhHHHHHHHHHhcCChhHHHHHHHHH
Q 036263           45 TVQWTSSISRHCRSGCILEAALEFTRM   71 (305)
Q Consensus        45 ~~~~~~li~~~~~~~~~~~a~~~~~~m   71 (305)
                      ...|......+.+.++...|-..|.++
T Consensus        55 ~~ay~kAa~~~~~~~~~~~Aa~~~~~A   81 (282)
T PF14938_consen   55 AEAYEKAADCYEKLGDKFEAAKAYEEA   81 (282)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            455555566666666655555555444

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.27  E-value=0.15  Score=47.13  Aligned_cols=213  Identities=11%  Similarity=0.102  Sum_probs=108.7

Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccH
Q 036263           56 CRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFW  130 (305)
Q Consensus        56 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~  130 (305)
                      ...+++..|+.-..++.+.  .|+. .|..++.++                ...|.|+.++|..+++....     ..+.
T Consensus        20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaL----------------sl~r~gk~~ea~~~Le~~~~~~~~D~~tL   80 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKAL----------------SLFRLGKGDEALKLLEALYGLKGTDDLTL   80 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHH----------------HHHHhcCchhHHHHHhhhccCCCCchHHH
Confidence            3456677777777666653  3332 233333332                24566777777777766633     4456


Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc
Q 036263          131 TALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF  210 (305)
Q Consensus       131 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  210 (305)
                      ..+-.+|.+.|+.++|..+|++...  ..|+..-...+..+|.+.+.+.+-.++--++-+ .++-+...+-++++.+...
T Consensus        81 q~l~~~y~d~~~~d~~~~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs  157 (932)
T KOG2053|consen   81 QFLQNVYRDLGKLDEAVHLYERANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQS  157 (932)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHh
Confidence            6667777777777777777777654  356666666777777777666543333333322 1233444444444444432


Q ss_pred             CC----------hHHHHHHHHhcccCc-----hhhHHHHHHHHHhcCChHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHh
Q 036263          211 GC----------IEFARQVFQRMHKRT-----LVSWNSIIVGFAVNGFVGEALEYFNL-MQKGVFKTDEVSFTGALTACS  274 (305)
Q Consensus       211 g~----------~~~a~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~-m~~~g~~p~~~~~~~li~~~~  274 (305)
                      ..          ..-|.+.++.+.+..     ..-...-...+-..|++++|.+++.. ..+.-..-+...-+.-+.-+.
T Consensus       158 ~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk  237 (932)
T KOG2053|consen  158 IFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLK  237 (932)
T ss_pred             ccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence            11          122444444444322     11122223334456667777777633 222222223333333334444


Q ss_pred             ccCcHHHHHHHHHHHH
Q 036263          275 HAGLIEDGLQYFDIMK  290 (305)
Q Consensus       275 ~~g~~~~a~~~~~~m~  290 (305)
                      ..++|.+..++-.++.
T Consensus       238 ~l~~w~~l~~l~~~Ll  253 (932)
T KOG2053|consen  238 LLNRWQELFELSSRLL  253 (932)
T ss_pred             HhcChHHHHHHHHHHH
Confidence            4555555554444444

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.26  E-value=0.0041  Score=49.87  Aligned_cols=85  Identities=12%  Similarity=0.117  Sum_probs=37.5

Q ss_pred             HHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHH
Q 036263          137 FVKRDYFEEALEYFRVMQISGVEPD-YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF  215 (305)
Q Consensus       137 ~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  215 (305)
                      +.+.+++++|+..|.+..+  +.|+ ..-|..-..+|.+.|..+.|.+-.+..+..+ +-....|..|..+|...|++++
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence            3344445555555544443  2332 2223333444444554444444444444332 2224444444445555555555


Q ss_pred             HHHHHHhcc
Q 036263          216 ARQVFQRMH  224 (305)
Q Consensus       216 a~~~~~~~~  224 (305)
                      |.+.|++..
T Consensus       168 A~~aykKaL  176 (304)
T KOG0553|consen  168 AIEAYKKAL  176 (304)
T ss_pred             HHHHHHhhh
Confidence            554444444

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.24  E-value=0.016  Score=52.92  Aligned_cols=184  Identities=18%  Similarity=0.224  Sum_probs=119.2

Q ss_pred             ChhHHHHHHH--HHHhcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHc-C--------CCCCHHHH
Q 036263           97 NVMVSTALLD--MYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQIS-G--------VEPDYLTI  165 (305)
Q Consensus        97 ~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g--------~~p~~~t~  165 (305)
                      |..+-.++++  .|...|+.|.|.+-.+.+.+..+|..|.+.|.+..+++-|.-.+-.|... |        -.|+ .+=
T Consensus       725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~e  803 (1416)
T KOG3617|consen  725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDE  803 (1416)
T ss_pred             CHHHHHhhhceeEEEEeccHHHHHHHHHHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chh
Confidence            3344444443  35567999999999999999999999999999999999888887777532 2        1232 111


Q ss_pred             HHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCc-hhhHHHHHHHHHhcCCh
Q 036263          166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT-LVSWNSIIVGFAVNGFV  244 (305)
Q Consensus       166 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~li~~~~~~g~~  244 (305)
                      ..+.-.....|..++|..+|++-.+.         ..|=+.|...|.+++|.++-+.-..-. -.||.....-+-..+|.
T Consensus       804 akvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di  874 (1416)
T KOG3617|consen  804 AKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDI  874 (1416)
T ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccH
Confidence            12222234678888888888776553         344556667788888887765433222 24566666666667777


Q ss_pred             HHHHHHHHH----------HHHCC---------CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          245 GEALEYFNL----------MQKGV---------FKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       245 ~~a~~~~~~----------m~~~g---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      +.|++.|++          |....         -..|...|...-+.....|+.|.|+.+|...+
T Consensus       875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~  939 (1416)
T KOG3617|consen  875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK  939 (1416)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence            777776654          22221         12244556666666667788888888888776

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.22  E-value=0.0016  Score=40.13  Aligned_cols=55  Identities=15%  Similarity=0.124  Sum_probs=33.7

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       235 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      ...+...|++++|.+.|++..+.. +-+...+..+..++...|++++|..+|+.+.
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~   58 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL   58 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            345566666777777777666653 2244556666666666677777776666665

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.19  E-value=0.019  Score=41.95  Aligned_cols=100  Identities=9%  Similarity=-0.003  Sum_probs=80.6

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036263          197 VRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC  273 (305)
Q Consensus       197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~  273 (305)
                      ....-.+..-+...|++++|.++|+-+..  | +..-|-.|.-++-..|++++|+..|........ -|+..+-.+-.++
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~  113 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECY  113 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHH
Confidence            34445556667789999999999998874  4 556777888888999999999999999988652 4667888888999


Q ss_pred             hccCcHHHHHHHHHHHHHHhCCCC
Q 036263          274 SHAGLIEDGLQYFDIMKKIYRVSP  297 (305)
Q Consensus       274 ~~~g~~~~a~~~~~~m~~~~~~~p  297 (305)
                      ...|+.+.|++.|+......+-.|
T Consensus       114 L~lG~~~~A~~aF~~Ai~~~~~~~  137 (157)
T PRK15363        114 LACDNVCYAIKALKAVVRICGEVS  137 (157)
T ss_pred             HHcCCHHHHHHHHHHHHHHhccCh
Confidence            999999999999998874444333

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.16  E-value=0.038  Score=42.94  Aligned_cols=159  Identities=14%  Similarity=0.074  Sum_probs=86.4

Q ss_pred             HHhcCChHHHHHHHHhcCc--------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHhcCc--
Q 036263          108 YAKFGRMDLATVVFDVMRG--------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDY--LTIISVLNVCANV--  175 (305)
Q Consensus       108 ~~~~g~~~~a~~~~~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~--  175 (305)
                      +...|++++|...|+.+..        ....-.++.++.+.|+++.|...++++.+.  -|+.  .-+...+.+.+.-  
T Consensus        15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~~~   92 (203)
T PF13525_consen   15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYYKQ   92 (203)
T ss_dssp             HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHHHh
Confidence            4566788888888877754        233556677777788888888888776654  2321  1122222221111  


Q ss_pred             -----------CChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCCh
Q 036263          176 -----------RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFV  244 (305)
Q Consensus       176 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~  244 (305)
                                 +...+|..               .+..++.-|=.+....+|...+..+.+.=..---.+.+-|.+.|.+
T Consensus        93 ~~~~~~~~~D~~~~~~A~~---------------~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y  157 (203)
T PF13525_consen   93 IPGILRSDRDQTSTRKAIE---------------EFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKY  157 (203)
T ss_dssp             HHHHH-TT---HHHHHHHH---------------HHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-H
T ss_pred             CccchhcccChHHHHHHHH---------------HHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence                       11112222               2333444444444555555555555432111222356678999999


Q ss_pred             HHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCcHHHHH
Q 036263          245 GEALEYFNLMQKGV--FKTDEVSFTGALTACSHAGLIEDGL  283 (305)
Q Consensus       245 ~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~  283 (305)
                      ..|..-++.+.+.=  .+-.......++.++.+.|..+.+.
T Consensus       158 ~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  158 KAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            99999999988862  1112245677788888888887544

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.15  E-value=0.1  Score=44.20  Aligned_cols=157  Identities=12%  Similarity=0.009  Sum_probs=100.7

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhcCcccc---------HHHHHHHHHc---CCChHHHHHHHHHHHHcCCCCCHHHHH
Q 036263           99 MVSTALLDMYAKFGRMDLATVVFDVMRGCDF---------WTALLNGFVK---RDYFEEALEYFRVMQISGVEPDYLTII  166 (305)
Q Consensus        99 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---------~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~t~~  166 (305)
                      .+...++-+|....+++...++.+.++...+         -....-++.+   .|+.++|++++.......-.++..||.
T Consensus       142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g  221 (374)
T PF13281_consen  142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG  221 (374)
T ss_pred             hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence            3344556678999999999999999976321         2233445666   899999999999966665677888888


Q ss_pred             HHHHHhc---------CcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC-hH---HHHHHH---Hhcc------
Q 036263          167 SVLNVCA---------NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC-IE---FARQVF---QRMH------  224 (305)
Q Consensus       167 ~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~---~a~~~~---~~~~------  224 (305)
                      .+...|-         .....+.|...|.+.-+..  ++...--.+...+...|. .+   +..++-   ..+.      
T Consensus       222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~  299 (374)
T PF13281_consen  222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL  299 (374)
T ss_pred             HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence            7766652         2334677777777665443  433322222222222332 11   222222   1111      


Q ss_pred             --cCchhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263          225 --KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG  257 (305)
Q Consensus       225 --~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  257 (305)
                        ..+-..+..++.++.-.|++++|.+..++|.+.
T Consensus       300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence              135567788899999999999999999999985

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.12  E-value=0.18  Score=45.03  Aligned_cols=131  Identities=10%  Similarity=0.060  Sum_probs=94.6

Q ss_pred             CCCH--HHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHH
Q 036263          159 EPDY--LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN-VRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWN  232 (305)
Q Consensus       159 ~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~  232 (305)
                      +|+.  +|+-.+...+-..|+++.|...++.....  .|+ ...|..-.+.+...|++++|..++++..+   +|...=.
T Consensus       366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INs  443 (700)
T KOG1156|consen  366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINS  443 (700)
T ss_pred             CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHH
Confidence            4443  44556777889999999999999998876  455 55677778999999999999999999885   4444333


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCC-----CHHH-HHHH--HHHHhccCcHHHHHHHHHHHHH
Q 036263          233 SIIVGFAVNGFVGEALEYFNLMQKGVFKT-----DEVS-FTGA--LTACSHAGLIEDGLQYFDIMKK  291 (305)
Q Consensus       233 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----~~~~-~~~l--i~~~~~~g~~~~a~~~~~~m~~  291 (305)
                      --..-..+..+.++|.++.....+.|...     +..+ |-.+  ..+|.+.|++-+|++=|..+.+
T Consensus       444 KcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k  510 (700)
T KOG1156|consen  444 KCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK  510 (700)
T ss_pred             HHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence            55666778899999999998887776411     1111 2111  2467788888888877776663

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.07  E-value=0.0025  Score=39.67  Aligned_cols=60  Identities=13%  Similarity=0.118  Sum_probs=37.9

Q ss_pred             HhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036263          208 SRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA  269 (305)
Q Consensus       208 ~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l  269 (305)
                      .+.|++++|.+.|+++.+  | +...+..+..+|.+.|++++|..+++++...  .|+...|..+
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l   64 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL   64 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence            356777777777777653  3 5556666777777777777777777777664  3554444433

...

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.07  E-value=0.054  Score=48.42  Aligned_cols=137  Identities=11%  Similarity=0.006  Sum_probs=93.4

Q ss_pred             cccHHHHHHHHHcC-----CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCc--------CChhHHHHHHHHHhhc-
Q 036263          127 CDFWTALLNGFVKR-----DYFEEALEYFRVMQISGVEPD-YLTIISVLNVCANV--------RTLGIGLWMHRYVPKQ-  191 (305)
Q Consensus       127 ~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~--------~~~~~a~~~~~~~~~~-  191 (305)
                      ...|...+++....     +..+.|.++|++..+.  .|+ ...+..+..++...        .+...+.+..+..... 
T Consensus       337 ~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~  414 (517)
T PRK10153        337 GAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALP  414 (517)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcc
Confidence            45688888775443     2377899999998874  676 33444333322111        1223333444433332 


Q ss_pred             CCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc--cCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 036263          192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH--KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT  267 (305)
Q Consensus       192 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~  267 (305)
                      ..+.+...|.++.-.+...|++++|...+++..  .|+...|..+...+...|+.++|.+.+++...  +.|...||.
T Consensus       415 ~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~~  490 (517)
T PRK10153        415 ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTLY  490 (517)
T ss_pred             cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchHH
Confidence            234456778887777777899999999999987  47888899999999999999999999999887  456655653

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.05  E-value=0.0098  Score=43.50  Aligned_cols=59  Identities=14%  Similarity=0.094  Sum_probs=27.7

Q ss_pred             HHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263          165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH  224 (305)
Q Consensus       165 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  224 (305)
                      ...++..+...|++++|..+.+.+.... +.+...|..+|.+|...|+..+|.++|+++.
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            3334444444555555555555555443 4444455555555555555555555555443

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.04  E-value=0.22  Score=44.61  Aligned_cols=223  Identities=13%  Similarity=0.116  Sum_probs=122.1

Q ss_pred             chHhHHHHHHHHHhcCChh--HHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036263           44 TTVQWTSSISRHCRSGCIL--EAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVF  121 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~  121 (305)
                      +...++..-++|.+-++..  +.+.-+++|+++|-.|+.......+..-        .-+......+.+.|.-..|.++|
T Consensus       597 eAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~--------gKF~EAAklFk~~G~enRAlEmy  668 (1081)
T KOG1538|consen  597 EALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQ--------GKFHEAAKLFKRSGHENRALEMY  668 (1081)
T ss_pred             hhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhh--------hhHHHHHHHHHHcCchhhHHHHH
Confidence            4455666677777765543  3444467788888889876554433221        11333444455555555555555


Q ss_pred             HhcCccccHHHHHHHHHcCCChHHHHHHHHHHHH--cCC-CCCHHHHHHHHHHhcCcCChhHHHHHHH------HHhhcC
Q 036263          122 DVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQI--SGV-EPDYLTIISVLNVCANVRTLGIGLWMHR------YVPKQD  192 (305)
Q Consensus       122 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~------~~~~~~  192 (305)
                      ..|+    ...+..-+...|..++-..+.+.--+  +.+ +|.. .    ...+...|+.++|..+.-      .+.+-+
T Consensus       669 TDlR----MFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePka-A----AEmLiSaGe~~KAi~i~~d~gW~d~lidI~  739 (1081)
T KOG1538|consen  669 TDLR----MFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKA-A----AEMLISAGEHVKAIEICGDHGWVDMLIDIA  739 (1081)
T ss_pred             HHHH----HHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHH-H----HHHhhcccchhhhhhhhhcccHHHHHHHHH
Confidence            5554    23344455555555554444432111  111 2221 1    222334455544443321      111111


Q ss_pred             C---CCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------
Q 036263          193 F---KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE------  263 (305)
Q Consensus       193 ~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------  263 (305)
                      -   ..+..+...+...+.+...+.-|-++|+.|-+.     ..++......++|++|+.+-++.-+  +.||.      
T Consensus       740 rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~-----ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaq  812 (1081)
T KOG1538|consen  740 RKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL-----KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQ  812 (1081)
T ss_pred             hhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-----HHHhhheeecccchHhHhhhhhCcc--ccccccchHHH
Confidence            1   223344444445555666677788888877632     3456667788888888888877654  33433      


Q ss_pred             -----HHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          264 -----VSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       264 -----~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                           .-|...-++|.+.|+-.+|..+++++.
T Consensus       813 wLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt  844 (1081)
T KOG1538|consen  813 WLAENDRFEEAQKAFHKAGRQREAVQVLEQLT  844 (1081)
T ss_pred             HhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence                 224455577888899999999888886

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.02  E-value=0.088  Score=39.57  Aligned_cols=98  Identities=12%  Similarity=0.043  Sum_probs=52.2

Q ss_pred             CCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc-----CchhhHHH
Q 036263          159 EPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK-----RTLVSWNS  233 (305)
Q Consensus       159 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~  233 (305)
                      .|+...-..|..++.+.|+..+|...|++...--+.-|....-.+.++....+++.+|...++++.+     ++..+.-.
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll  165 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL  165 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence            4444444455555555566666665555555444444555555555555555555555555555542     12223334


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHH
Q 036263          234 IIVGFAVNGFVGEALEYFNLMQK  256 (305)
Q Consensus       234 li~~~~~~g~~~~a~~~~~~m~~  256 (305)
                      +.+.+...|++..|..-|+....
T Consensus       166 ~aR~laa~g~~a~Aesafe~a~~  188 (251)
T COG4700         166 FARTLAAQGKYADAESAFEVAIS  188 (251)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHH
Confidence            44555555666656555555555

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.01  E-value=0.0037  Score=38.50  Aligned_cols=53  Identities=19%  Similarity=0.186  Sum_probs=34.0

Q ss_pred             HHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263          204 MDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQK  256 (305)
Q Consensus       204 i~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  256 (305)
                      ...+.+.|++++|.+.|+++.+  | +...+..+..++...|++++|..+|++..+
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4456666777777777777664  2 445666666667777777777777776665

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.98  E-value=0.043  Score=38.49  Aligned_cols=101  Identities=11%  Similarity=0.010  Sum_probs=67.1

Q ss_pred             HHHhcCcCChhHHHHHHHHHhhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhccc--Cc----hhhHHHHHHHHHh
Q 036263          169 LNVCANVRTLGIGLWMHRYVPKQDFKDN--VRVCNTLMDVYSRFGCIEFARQVFQRMHK--RT----LVSWNSIIVGFAV  240 (305)
Q Consensus       169 l~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~li~~~~~  240 (305)
                      -.++-..|+.++|..+|++....|....  ...+-.+...|...|++++|..++++...  |+    ......+.-++..
T Consensus         8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~   87 (120)
T PF12688_consen    8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN   87 (120)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence            3455677888999999998888876554  34566677788888999999988888763  33    1222223346677


Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036263          241 NGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC  273 (305)
Q Consensus       241 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~  273 (305)
                      .|+.++|+.++-....    ++...|..-|..|
T Consensus        88 ~gr~~eAl~~~l~~la----~~~~~y~ra~~~y  116 (120)
T PF12688_consen   88 LGRPKEALEWLLEALA----ETLPRYRRAIRFY  116 (120)
T ss_pred             CCCHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence            8888888888766544    2333444444444

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.98  E-value=0.075  Score=49.05  Aligned_cols=174  Identities=15%  Similarity=0.138  Sum_probs=117.3

Q ss_pred             hcCChHHHHHHHHhcCc---cccHHHHHHH--HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHH
Q 036263          110 KFGRMDLATVVFDVMRG---CDFWTALLNG--FVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWM  184 (305)
Q Consensus       110 ~~g~~~~a~~~~~~~~~---~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~  184 (305)
                      ..+++..|......+..   ...|..++.+  +.+.|+.++|..+++.....+.. |..|...+-..|.+.++.++|..+
T Consensus        21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~   99 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL   99 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence            34667777766666543   3346666655  46789999999999887665444 889999999999999999999999


Q ss_pred             HHHHhhcCCCCChhHHHHHHHHHHhcCChHH----HHHHHHhcccCchhhHHHHHHHHHhc-CC---------hHHHHHH
Q 036263          185 HRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF----ARQVFQRMHKRTLVSWNSIIVGFAVN-GF---------VGEALEY  250 (305)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~li~~~~~~-g~---------~~~a~~~  250 (305)
                      |++..+.  .|+......+..+|.+.+.+.+    |.++++...+.--.-| ++++..... ..         ..-|...
T Consensus       100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfW-sV~Slilqs~~~~~~~~~~i~l~LA~~m  176 (932)
T KOG2053|consen  100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFW-SVISLILQSIFSENELLDPILLALAEKM  176 (932)
T ss_pred             HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHH-HHHHHHHHhccCCcccccchhHHHHHHH
Confidence            9999886  4668778888888888887654    6667776555433333 444443322 11         2334455


Q ss_pred             HHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 036263          251 FNLMQKGV-FKTDEVSFTGALTACSHAGLIEDGLQYFD  287 (305)
Q Consensus       251 ~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~  287 (305)
                      ++.+.+.+ ---+..-...-.......|.+++|++++.
T Consensus       177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~  214 (932)
T KOG2053|consen  177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLA  214 (932)
T ss_pred             HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            55555543 22223333344455667889999999984

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.95  E-value=0.18  Score=42.08  Aligned_cols=86  Identities=15%  Similarity=0.154  Sum_probs=72.7

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036263          198 RVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG  277 (305)
Q Consensus       198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g  277 (305)
                      .+.+..|.-+...|....|.++-.+.+-|+..-|...+.+++..++|++-.++...      +-++.-|..++.+|.+.|
T Consensus       178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~  251 (319)
T PF04840_consen  178 LSLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYG  251 (319)
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCC
Confidence            34555677778889999999999999999999999999999999999988876543      224478899999999999


Q ss_pred             cHHHHHHHHHHH
Q 036263          278 LIEDGLQYFDIM  289 (305)
Q Consensus       278 ~~~~a~~~~~~m  289 (305)
                      ..++|..+...+
T Consensus       252 ~~~eA~~yI~k~  263 (319)
T PF04840_consen  252 NKKEASKYIPKI  263 (319)
T ss_pred             CHHHHHHHHHhC
Confidence            999999988764

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.93  E-value=0.0079  Score=48.32  Aligned_cols=100  Identities=14%  Similarity=0.089  Sum_probs=85.5

Q ss_pred             HhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccC---chhhHHHHHHHHHhcCChHHH
Q 036263          171 VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEA  247 (305)
Q Consensus       171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a  247 (305)
                      -+.+.+++.+|...|.+.++.. +.|++-|..=..+|++.|.++.|++--+....-   -..+|..|-.+|...|++++|
T Consensus        90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A  168 (304)
T KOG0553|consen   90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA  168 (304)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence            4678899999999999999985 667888888899999999999999888877753   347899999999999999999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036263          248 LEYFNLMQKGVFKTDEVSFTGALTAC  273 (305)
Q Consensus       248 ~~~~~~m~~~g~~p~~~~~~~li~~~  273 (305)
                      .+.|++..+  +.|+..+|..=+...
T Consensus       169 ~~aykKaLe--ldP~Ne~~K~nL~~A  192 (304)
T KOG0553|consen  169 IEAYKKALE--LDPDNESYKSNLKIA  192 (304)
T ss_pred             HHHHHhhhc--cCCCcHHHHHHHHHH
Confidence            999999888  789988887666543

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.91  E-value=0.18  Score=43.92  Aligned_cols=205  Identities=13%  Similarity=0.113  Sum_probs=121.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc-
Q 036263           48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG-  126 (305)
Q Consensus        48 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-  126 (305)
                      +..+..+.-+..+++.|++-++...+..   ...+|...+.                 .+|...|........-+...+ 
T Consensus       227 ek~lgnaaykkk~f~~a~q~y~~a~el~---~~it~~~n~a-----------------A~~~e~~~~~~c~~~c~~a~E~  286 (539)
T KOG0548|consen  227 EKELGNAAYKKKDFETAIQHYAKALELA---TDITYLNNIA-----------------AVYLERGKYAECIELCEKAVEV  286 (539)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHH-----------------HHHHhccHHHHhhcchHHHHHH
Confidence            5567777777888888888888887643   4444433332                 234444433333322222211 


Q ss_pred             -----------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHH-------------------------HHHHHH
Q 036263          127 -----------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLT-------------------------IISVLN  170 (305)
Q Consensus       127 -----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-------------------------~~~ll~  170 (305)
                                 ...+..+..++.+.++++.+...|.+.......|+..+                         ...--+
T Consensus       287 gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGn  366 (539)
T KOG0548|consen  287 GRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGN  366 (539)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHH
Confidence                       11122233345555666666666665443333333211                         112244


Q ss_pred             HhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccC---chhhHHHHHHHHHhcCChHHH
Q 036263          171 VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEA  247 (305)
Q Consensus       171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a  247 (305)
                      .+.+.|++..|...|.+++++. +-|...|..-.-+|.+.|.+..|.+--+...+.   ....|..=..++....+|++|
T Consensus       367 e~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkA  445 (539)
T KOG0548|consen  367 EAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKA  445 (539)
T ss_pred             HHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence            5677888999999999988887 777888888888999999888888766655542   233344334445555678888


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036263          248 LEYFNLMQKGVFKTDEVSFTGALTACSH  275 (305)
Q Consensus       248 ~~~~~~m~~~g~~p~~~~~~~li~~~~~  275 (305)
                      .+.|++..+.  .|+..-+..-+.-|..
T Consensus       446 leay~eale~--dp~~~e~~~~~~rc~~  471 (539)
T KOG0548|consen  446 LEAYQEALEL--DPSNAEAIDGYRRCVE  471 (539)
T ss_pred             HHHHHHHHhc--CchhHHHHHHHHHHHH
Confidence            8888888774  3665554444444443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.86  E-value=0.25  Score=42.37  Aligned_cols=66  Identities=9%  Similarity=0.082  Sum_probs=50.3

Q ss_pred             hHHHHHHH--HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCccccc
Q 036263          230 SWNSIIVG--FAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHHG  303 (305)
Q Consensus       230 ~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~  303 (305)
                      .-|-+-+|  +..+|++.++.-.-..+.+  +.|+..+|..+--+.....++++|+.++..+      +|+.++++
T Consensus       462 ian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L------P~n~~~~d  529 (549)
T PF07079_consen  462 IANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL------PPNERMRD  529 (549)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC------CCchhhHH
Confidence            33444444  4568889888877777766  7899999999999999999999999999855      35555543

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.84  E-value=0.0071  Score=37.70  Aligned_cols=62  Identities=18%  Similarity=0.199  Sum_probs=40.7

Q ss_pred             hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-cHHHHHHHHHHHH
Q 036263          228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG-LIEDGLQYFDIMK  290 (305)
Q Consensus       228 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~  290 (305)
                      ...|..+...+...|++++|...|++..+.. +-+...|..+..++.+.| ++++|++.++...
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al   65 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL   65 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            4556666677777777777777777766642 224456666666777777 6777777776655

...

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.84  E-value=0.0076  Score=42.68  Aligned_cols=79  Identities=13%  Similarity=0.123  Sum_probs=61.2

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhcc-------------------cCchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263          196 NVRVCNTLMDVYSRFGCIEFARQVFQRMH-------------------KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK  256 (305)
Q Consensus       196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~-------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  256 (305)
                      |..++..+|.++++.|+++....+.+..=                   -|+..+..+++.+|+..|++..|+++.+...+
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~   80 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR   80 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            45678899999999999999988887652                   14667788888888888888888888887544


Q ss_pred             -CCCCCCHHHHHHHHHHHh
Q 036263          257 -GVFKTDEVSFTGALTACS  274 (305)
Q Consensus       257 -~g~~p~~~~~~~li~~~~  274 (305)
                       .+++.+..+|..|++=+.
T Consensus        81 ~Y~I~i~~~~W~~Ll~W~~   99 (126)
T PF12921_consen   81 KYPIPIPKEFWRRLLEWAY   99 (126)
T ss_pred             HcCCCCCHHHHHHHHHHHH
Confidence             467777888888877433

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=96.82  E-value=0.067  Score=50.07  Aligned_cols=51  Identities=16%  Similarity=0.183  Sum_probs=24.3

Q ss_pred             cCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263          173 ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH  224 (305)
Q Consensus       173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  224 (305)
                      .+.++...+..-|+...+.. +-|...|..+..+|.++|++..|.++|.+..
T Consensus       573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs  623 (1238)
T KOG1127|consen  573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKAS  623 (1238)
T ss_pred             cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence            34444444444444444433 3344445555555555555555555554443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.81  E-value=0.0067  Score=38.93  Aligned_cols=61  Identities=18%  Similarity=0.229  Sum_probs=28.8

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHHC----C-CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          230 SWNSIIVGFAVNGFVGEALEYFNLMQKG----V-FKTD-EVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       230 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      +|+.+...|...|++++|...|++..+.    | -.|+ ..++..+..++...|++++|++++++..
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3444455555555555555555443321    1 0111 3445555555555666666666555543

...

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.76  E-value=0.034  Score=39.41  Aligned_cols=82  Identities=11%  Similarity=0.020  Sum_probs=61.3

Q ss_pred             CHHHHHHHHHHhcCcCChhHHHHHHHHHh---------------hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc
Q 036263          161 DYLTIISVLNVCANVRTLGIGLWMHRYVP---------------KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK  225 (305)
Q Consensus       161 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~---------------~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  225 (305)
                      |..++.++|.++++.|+.+....+++..=               .....|+..+..+++.+|+..|++..|.++.+...+
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~   80 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR   80 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            46788888999999999988888886641               122457888888999999999999999988888764


Q ss_pred             -----CchhhHHHHHHHHHhcC
Q 036263          226 -----RTLVSWNSIIVGFAVNG  242 (305)
Q Consensus       226 -----~~~~~~~~li~~~~~~g  242 (305)
                           -+...|..|+.-....-
T Consensus        81 ~Y~I~i~~~~W~~Ll~W~~v~s  102 (126)
T PF12921_consen   81 KYPIPIPKEFWRRLLEWAYVLS  102 (126)
T ss_pred             HcCCCCCHHHHHHHHHHHHHhc
Confidence                 24567777776654443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.74  E-value=0.37  Score=42.68  Aligned_cols=232  Identities=13%  Similarity=0.060  Sum_probs=139.5

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC----CCh----------------------------
Q 036263           51 SISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----NNV----------------------------   98 (305)
Q Consensus        51 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----~~~----------------------------   98 (305)
                      +.-++-..|+.++|..+|....+.. .+|........+-+.....    ++.                            
T Consensus       230 layVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~  308 (652)
T KOG2376|consen  230 LAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQA  308 (652)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            3445667899999999999988763 4555444444333322221    110                            


Q ss_pred             hHH-HHHHHHHHhcCChHHHHHHHHhcCc---cccHHHHHHHHHcC--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 036263           99 MVS-TALLDMYAKFGRMDLATVVFDVMRG---CDFWTALLNGFVKR--DYFEEALEYFRVMQISGVEPDYLTIISVLNVC  172 (305)
Q Consensus        99 ~~~-~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~  172 (305)
                      ... +.++..|  .+..+.+.++-...+.   ...+.+++..+.+.  ..+..+..++...-+..-.-...+.-.++...
T Consensus       309 i~~N~~lL~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~  386 (652)
T KOG2376|consen  309 IYRNNALLALF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLK  386 (652)
T ss_pred             HHHHHHHHHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHH
Confidence            000 1111111  1233333333333333   22344555443332  24666777776665542222345566677778


Q ss_pred             cCcCChhHHHHHHH--------HHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc------Cc----hhhHHHH
Q 036263          173 ANVRTLGIGLWMHR--------YVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK------RT----LVSWNSI  234 (305)
Q Consensus       173 ~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~------~~----~~~~~~l  234 (305)
                      ...|+++.|.+++.        .+.+.+..|  .+...++..|.+.++-+.|..++.+..+      ..    ..++..+
T Consensus       387 is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~a  464 (652)
T KOG2376|consen  387 ISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREA  464 (652)
T ss_pred             HhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHH
Confidence            89999999999998        555554444  4456667777777777777777776652      11    1234444


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 036263          235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM  289 (305)
Q Consensus       235 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  289 (305)
                      ..--.+.|+.++|..+++++.+.+ ++|..+...++.+|++. +.+.|..+-..+
T Consensus       465 a~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L  517 (652)
T KOG2376|consen  465 AEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL  517 (652)
T ss_pred             hHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence            444567899999999999999863 57889999999999885 667776665544

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.72  E-value=0.0055  Score=38.23  Aligned_cols=59  Identities=20%  Similarity=0.221  Sum_probs=28.9

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 036263          198 RVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNG-FVGEALEYFNLMQK  256 (305)
Q Consensus       198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~  256 (305)
                      ..|..+...+...|++++|...|++..+   .+...|..+..+|...| ++++|.+.+++..+
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            3444445555555555555555555442   13344445555555555 45555555554433

...

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=96.71  E-value=0.32  Score=42.67  Aligned_cols=142  Identities=10%  Similarity=0.094  Sum_probs=112.8

Q ss_pred             hHHHHHHHHhcCc------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHH
Q 036263          114 MDLATVVFDVMRG------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHR  186 (305)
Q Consensus       114 ~~~a~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~  186 (305)
                      .+.....++++..      ..+|-.++....+..-++.|..+|.+..+.+..+ +...+.++|..+| .++...|.++|+
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe  425 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE  425 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence            4444555555533      5679999999999999999999999999988777 7777888887665 577889999999


Q ss_pred             HHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccC------chhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263          187 YVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR------TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG  257 (305)
Q Consensus       187 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  257 (305)
                      .-.+.- ..+..--...++-+...++-..|..+|++....      ....|..+|.-=..-|+...+.++-+++...
T Consensus       426 LGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a  501 (656)
T KOG1914|consen  426 LGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA  501 (656)
T ss_pred             HHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            766652 344455567788889999999999999998743      4578999999999999999999998887653

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.71  E-value=0.33  Score=41.70  Aligned_cols=126  Identities=11%  Similarity=0.088  Sum_probs=90.9

Q ss_pred             HHHHHHHHHhcCcCChhHHHHHHHHHhhcC-CCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--CchhhH-HHHHHHH
Q 036263          163 LTIISVLNVCANVRTLGIGLWMHRYVPKQD-FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RTLVSW-NSIIVGF  238 (305)
Q Consensus       163 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~-~~li~~~  238 (305)
                      .+|-..+++..+..-++.|..+|-++.+.| +.+++.+++++|..++. |+..-|.++|+--..  +|...| +-.+.-+
T Consensus       398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL  476 (660)
T COG5107         398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKFPDSTLYKEKYLLFL  476 (660)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            346667777778888888999999998888 56778888888887765 667788888876542  555444 4456666


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          239 AVNGFVGEALEYFNLMQKGVFKTD--EVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       239 ~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      ...++-+.|..+|+.-... +.-+  ..+|..+|..-+.-|+...+..+-+.|.
T Consensus       477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~  529 (660)
T COG5107         477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR  529 (660)
T ss_pred             HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence            7788888888888854432 2222  4678888888888888877777666665

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.70  E-value=0.15  Score=40.53  Aligned_cols=135  Identities=16%  Similarity=0.121  Sum_probs=98.8

Q ss_pred             HHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccC----chhhHHHH-----
Q 036263          164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR----TLVSWNSI-----  234 (305)
Q Consensus       164 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~l-----  234 (305)
                      +.++++..+.-.+.+.....++.++++..-+-++.....|++.-.+.|+.+.|...|++..+.    |..+++.+     
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            456677777788888888999999999876778888999999999999999999999987742    33344433     


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCcccc
Q 036263          235 IVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHH  302 (305)
Q Consensus       235 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y  302 (305)
                      -..|.-++++..|...+.+....+ .-|....|.=.-+..-.|+..+|.+.++.|.   ...|...+-
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~---~~~P~~~l~  322 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMV---QQDPRHYLH  322 (366)
T ss_pred             hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHh---ccCCccchh
Confidence            334667788999999998877653 1234444433344445689999999999888   555655443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.64  E-value=0.049  Score=44.07  Aligned_cols=93  Identities=12%  Similarity=-0.046  Sum_probs=54.6

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhccc--Cch----hhHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHH
Q 036263          198 RVCNTLMDVYSRFGCIEFARQVFQRMHK--RTL----VSWNSIIVGFAVNGFVGEALEYFNLMQKGV--FKTDEVSFTGA  269 (305)
Q Consensus       198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~l  269 (305)
                      ..|...+..+.+.|++++|...|+.+.+  |+.    ..+--+...|...|++++|...|+.+.+.-  -+.....+..+
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl  223 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV  223 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence            3455555444556777777777776663  322    345556666777777777777777766531  01112334444


Q ss_pred             HHHHhccCcHHHHHHHHHHHH
Q 036263          270 LTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       270 i~~~~~~g~~~~a~~~~~~m~  290 (305)
                      ...+...|+.+.|..+|+.+.
T Consensus       224 g~~~~~~g~~~~A~~~~~~vi  244 (263)
T PRK10803        224 GVIMQDKGDTAKAKAVYQQVI  244 (263)
T ss_pred             HHHHHHcCCHHHHHHHHHHHH
Confidence            555666777777777777666

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.61  E-value=0.041  Score=48.04  Aligned_cols=43  Identities=19%  Similarity=0.351  Sum_probs=19.9

Q ss_pred             hcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHH
Q 036263          110 KFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRV  152 (305)
Q Consensus       110 ~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  152 (305)
                      +.|+++.|.++.+...+...|..|.....+.|+++.|.+.|.+
T Consensus       330 ~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k  372 (443)
T PF04053_consen  330 QLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQK  372 (443)
T ss_dssp             HCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            3444444444444444444444444444444444444444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.59  E-value=0.1  Score=41.94  Aligned_cols=128  Identities=13%  Similarity=0.108  Sum_probs=86.6

Q ss_pred             CccccccCCCC--CCchHhHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHH
Q 036263           31 ISIQTNNSKST--IDTTVQWTSSISRHCRS-----GCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTA  103 (305)
Q Consensus        31 ~~~~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~  103 (305)
                      ..++..|...+  +.|-.+|-+.+..+...     +.++=....+..|++.|+.-|..+|+.||..+-+.          
T Consensus        51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKg----------  120 (406)
T KOG3941|consen   51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKG----------  120 (406)
T ss_pred             cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccc----------
Confidence            33445555554  67888999988888653     66777778899999999999999998888765332          


Q ss_pred             HHHHHHhcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChh-HHH
Q 036263          104 LLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLG-IGL  182 (305)
Q Consensus       104 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~  182 (305)
                               .+- -..+|+.         +.-.|  -.+-+-+.+++++|...|+.||..+--.+++++++.+..- +..
T Consensus       121 ---------kfi-P~nvfQ~---------~F~HY--P~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~  179 (406)
T KOG3941|consen  121 ---------KFI-PQNVFQK---------VFLHY--PQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVK  179 (406)
T ss_pred             ---------ccc-cHHHHHH---------HHhhC--chhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHH
Confidence                     110 0111111         11111  1234557889999999999999999999999999887643 344


Q ss_pred             HHHHHHh
Q 036263          183 WMHRYVP  189 (305)
Q Consensus       183 ~~~~~~~  189 (305)
                      ++.-.|-
T Consensus       180 Rm~yWmP  186 (406)
T KOG3941|consen  180 RMLYWMP  186 (406)
T ss_pred             HHHHhhh
Confidence            4444443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.57  E-value=0.21  Score=37.63  Aligned_cols=138  Identities=10%  Similarity=-0.004  Sum_probs=99.2

Q ss_pred             hHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCC
Q 036263          114 MDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF  193 (305)
Q Consensus       114 ~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  193 (305)
                      +.+|.+-++..+.+..--.|..++.+.|+..+|...|.+-..--+.-|......+.++....+++..+...++.+.+...
T Consensus        76 ~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p  155 (251)
T COG4700          76 LREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP  155 (251)
T ss_pred             HHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC
Confidence            44555556666655556678899999999999999999876544556788888999999999999999999999877541


Q ss_pred             C-CChhHHHHHHHHHHhcCChHHHHHHHHhccc--CchhhHHHHHHHHHhcCChHHHHHHH
Q 036263          194 K-DNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RTLVSWNSIIVGFAVNGFVGEALEYF  251 (305)
Q Consensus       194 ~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~  251 (305)
                      . -++...-.+.+.|...|+..+|+.-|+....  |+...--..-..+++.|+.+++..-+
T Consensus       156 a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~  216 (251)
T COG4700         156 AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQY  216 (251)
T ss_pred             ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence            0 1233445667888999999999999988874  44433333334456677666654433

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.57  E-value=0.0084  Score=38.45  Aligned_cols=60  Identities=17%  Similarity=0.177  Sum_probs=31.2

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHc----CC-CCC-HHHHHHHHHHhcCcCChhHHHHHHHHHh
Q 036263          130 WTALLNGFVKRDYFEEALEYFRVMQIS----GV-EPD-YLTIISVLNVCANVRTLGIGLWMHRYVP  189 (305)
Q Consensus       130 ~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~  189 (305)
                      |+.+...|...|++++|++.|++..+.    |- .|+ ..++..+-..+...|++++|.+.+++..
T Consensus         8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            444444455555555555555443321    10 122 4556666666777777777777766654

...

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.45  E-value=0.47  Score=42.10  Aligned_cols=161  Identities=15%  Similarity=-0.011  Sum_probs=112.8

Q ss_pred             cccHHHHHHHHHcCCChHHHHHHHHHHHHc-CCCCCH-----HHHHHHHHHhcC----cCChhHHHHHHHHHhhcCCCCC
Q 036263          127 CDFWTALLNGFVKRDYFEEALEYFRVMQIS-GVEPDY-----LTIISVLNVCAN----VRTLGIGLWMHRYVPKQDFKDN  196 (305)
Q Consensus       127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~-----~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~  196 (305)
                      +.....+++..+-.|+-+.+++.+.+-.+. |+.-..     -+|..++..++.    ....+.+.++++.+.++  -|+
T Consensus       188 Pp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~  265 (468)
T PF10300_consen  188 PPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPN  265 (468)
T ss_pred             CHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCC
Confidence            344667777888889999999999876543 333222     235555554443    45678899999999887  577


Q ss_pred             hhHHHHH-HHHHHhcCChHHHHHHHHhccc-------CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 036263          197 VRVCNTL-MDVYSRFGCIEFARQVFQRMHK-------RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG  268 (305)
Q Consensus       197 ~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~  268 (305)
                      ...|... .+.+...|++++|.+.|++...       -....+--+...+...++|++|.+.|.++.+.. ..+..+|.-
T Consensus       266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y  344 (468)
T PF10300_consen  266 SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAY  344 (468)
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHH
Confidence            6666544 5677889999999999997653       133456666777888999999999999999864 224444444


Q ss_pred             HHH-HHhccCcH-------HHHHHHHHHHH
Q 036263          269 ALT-ACSHAGLI-------EDGLQYFDIMK  290 (305)
Q Consensus       269 li~-~~~~~g~~-------~~a~~~~~~m~  290 (305)
                      +.- ++...|+.       ++|.++|.+.-
T Consensus       345 ~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  345 LAAACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            333 33456777       88888888776

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=96.41  E-value=0.21  Score=46.97  Aligned_cols=126  Identities=11%  Similarity=0.001  Sum_probs=84.9

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHhcCc-------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHH
Q 036263           96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRG-------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIIS  167 (305)
Q Consensus        96 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~  167 (305)
                      .+...+.++.+.|++..+++.|..+.-..-+       ...|....-.|.+.++...|..-|+.-.+  +.| |...|..
T Consensus       524 tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR--~dPkD~n~W~g  601 (1238)
T KOG1127|consen  524 TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALR--TDPKDYNLWLG  601 (1238)
T ss_pred             hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhc--CCchhHHHHHH
Confidence            3455567777788888888888877433221       12233444456667778888877776554  345 7788999


Q ss_pred             HHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263          168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH  224 (305)
Q Consensus       168 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  224 (305)
                      +..+|.+.|+...|.++|.+..... +.+...---..-.-+..|++.+|...++...
T Consensus       602 LGeAY~~sGry~~AlKvF~kAs~Lr-P~s~y~~fk~A~~ecd~GkYkeald~l~~ii  657 (1238)
T KOG1127|consen  602 LGEAYPESGRYSHALKVFTKASLLR-PLSKYGRFKEAVMECDNGKYKEALDALGLII  657 (1238)
T ss_pred             HHHHHHhcCceehHHHhhhhhHhcC-cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            9999999999999999998877654 2222222222334467788888888887765

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.28  E-value=0.022  Score=35.84  Aligned_cols=51  Identities=22%  Similarity=0.127  Sum_probs=24.4

Q ss_pred             HHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263          206 VYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQK  256 (305)
Q Consensus       206 ~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  256 (305)
                      .|.+.+++++|.++++++..  | +...|......+...|++++|.+.|+...+
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~   57 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE   57 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            34445555555555555442  1 333444444445555555555555555444

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.27  E-value=0.45  Score=44.00  Aligned_cols=183  Identities=11%  Similarity=0.045  Sum_probs=107.2

Q ss_pred             hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 036263           45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM  124 (305)
Q Consensus        45 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~  124 (305)
                      ......-|..+.+...++-|+.+-+.     ...|..+...+.+.|              .+-+.+.|++++|...|-+-
T Consensus       334 ek~le~kL~iL~kK~ly~~Ai~LAk~-----~~~d~d~~~~i~~kY--------------gd~Ly~Kgdf~~A~~qYI~t  394 (933)
T KOG2114|consen  334 EKDLETKLDILFKKNLYKVAINLAKS-----QHLDEDTLAEIHRKY--------------GDYLYGKGDFDEATDQYIET  394 (933)
T ss_pred             eccHHHHHHHHHHhhhHHHHHHHHHh-----cCCCHHHHHHHHHHH--------------HHHHHhcCCHHHHHHHHHHH
Confidence            33444556666666667766665443     223444444444433              34466789999999888766


Q ss_pred             CccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHH
Q 036263          125 RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLM  204 (305)
Q Consensus       125 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li  204 (305)
                      ....-=..+|.-|....+..+-..+++.+.+.|+. +...-+.|+.+|.+.++.+.-.++.+.-. .|..  ..-....+
T Consensus       395 I~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al  470 (933)
T KOG2114|consen  395 IGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETAL  470 (933)
T ss_pred             cccCChHHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHH
Confidence            54333345677777777888888888888888854 55666788899999888877776665543 2211  11133445


Q ss_pred             HHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 036263          205 DVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM  254 (305)
Q Consensus       205 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  254 (305)
                      ..+.+.+-.++|..+-.+..+ +......+   +-..+++++|++++..+
T Consensus       471 ~Ilr~snyl~~a~~LA~k~~~-he~vl~il---le~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  471 EILRKSNYLDEAELLATKFKK-HEWVLDIL---LEDLHNYEEALRYISSL  516 (933)
T ss_pred             HHHHHhChHHHHHHHHHHhcc-CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence            555555555555555444443 22222222   22345566666555543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.26  E-value=0.12  Score=45.17  Aligned_cols=150  Identities=16%  Similarity=0.175  Sum_probs=101.1

Q ss_pred             HhcCChHHHHHHHH------hcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHH
Q 036263          109 AKFGRMDLATVVFD------VMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL  182 (305)
Q Consensus       109 ~~~g~~~~a~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~  182 (305)
                      .-.++++.+.++.+      ..+ ....+.+++-+.+.|..+.|+++...-.            .-.....+.|+++.|.
T Consensus       272 v~~~d~~~v~~~i~~~~ll~~i~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~  338 (443)
T PF04053_consen  272 VLRGDFEEVLRMIAASNLLPNIP-KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIAL  338 (443)
T ss_dssp             HHTT-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHH
T ss_pred             HHcCChhhhhhhhhhhhhcccCC-hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHH
Confidence            34578888544443      223 3447888999999999999988765422            1233445788888888


Q ss_pred             HHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 036263          183 WMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD  262 (305)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~  262 (305)
                      ++-++.      .+...|..|.+...+.|+++-|++.|++..     -|..|+--|...|+.++..++.+.....|-   
T Consensus       339 ~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~---  404 (443)
T PF04053_consen  339 EIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK-----DFSGLLLLYSSTGDREKLSKLAKIAEERGD---  404 (443)
T ss_dssp             HHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT----
T ss_pred             HHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc-----CccccHHHHHHhCCHHHHHHHHHHHHHccC---
Confidence            765433      467799999999999999999999999988     466777788889999888888888777652   


Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHH
Q 036263          263 EVSFTGALTACSHAGLIEDGLQYFDI  288 (305)
Q Consensus       263 ~~~~~~li~~~~~~g~~~~a~~~~~~  288 (305)
                         ++....++.-.|+.++..+++.+
T Consensus       405 ---~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  405 ---INIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             ---HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             ---HHHHHHHHHHcCCHHHHHHHHHH
Confidence               44555566666888877777764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.19  E-value=0.045  Score=46.17  Aligned_cols=128  Identities=13%  Similarity=0.049  Sum_probs=91.1

Q ss_pred             HHHHHHHHHhcCcCChhHHHHHHHHH----hhcCCC-CChhHHHHHHHHHHhcCChHHHHHHHHhcc-------cCch--
Q 036263          163 LTIISVLNVCANVRTLGIGLWMHRYV----PKQDFK-DNVRVCNTLMDVYSRFGCIEFARQVFQRMH-------KRTL--  228 (305)
Q Consensus       163 ~t~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-------~~~~--  228 (305)
                      ..|..|-+.|.-.|+++.|...++.=    .+.|-. .....+..+.+++.-.|+++.|.+.|+...       .+.+  
T Consensus       196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA  275 (639)
T KOG1130|consen  196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA  275 (639)
T ss_pred             chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence            45666777777788999988776643    222322 234567888999999999999999888754       2333  


Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHH----HCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          229 VSWNSIIVGFAVNGFVGEALEYFNLMQ----KGV-FKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       229 ~~~~~li~~~~~~g~~~~a~~~~~~m~----~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      .+.-+|...|.-..++++|+.++.+=.    +.+ ..-....+++|-.+|...|..+.|+.+.+.-.
T Consensus       276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl  342 (639)
T KOG1130|consen  276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL  342 (639)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            455567777888888999998876622    221 23355788899999999999999988777554

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.17  E-value=0.13  Score=41.64  Aligned_cols=99  Identities=10%  Similarity=-0.043  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhccc--C----chhhH
Q 036263          162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN----VRVCNTLMDVYSRFGCIEFARQVFQRMHK--R----TLVSW  231 (305)
Q Consensus       162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~----~~~~~  231 (305)
                      ...|...+....+.|++++|...|+.+.+.-  |+    ...+..+..+|...|++++|...|+.+.+  |    ....+
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            3456666665567799999999999998874  33    35778889999999999999999999974  3    23445


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 036263          232 NSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV  264 (305)
Q Consensus       232 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~  264 (305)
                      -.+...+...|+.++|..+|+...+.  .|+..
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~~--yP~s~  251 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIKK--YPGTD  251 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence            55667788999999999999998885  35443

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.15  E-value=0.065  Score=42.95  Aligned_cols=97  Identities=16%  Similarity=0.214  Sum_probs=74.3

Q ss_pred             ccHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcC----------------ChhHHHHHHH
Q 036263          128 DFWTALLNGFVK-----RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVR----------------TLGIGLWMHR  186 (305)
Q Consensus       128 ~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----------------~~~~a~~~~~  186 (305)
                      .+|-..+..+..     .+.++-....++.|++.|++-|..+|+.|++.+-+..                +-+-+..+++
T Consensus        68 ~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLe  147 (406)
T KOG3941|consen   68 DSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLE  147 (406)
T ss_pred             HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHH
Confidence            345455544433     3567777788899999999999999999999876543                3355789999


Q ss_pred             HHhhcCCCCChhHHHHHHHHHHhcCC-hHHHHHHHHhcc
Q 036263          187 YVPKQDFKDNVRVCNTLMDVYSRFGC-IEFARQVFQRMH  224 (305)
Q Consensus       187 ~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~  224 (305)
                      +|...|+.||..+-..+++++++.+- ..+..++.-.|.
T Consensus       148 qME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP  186 (406)
T KOG3941|consen  148 QMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP  186 (406)
T ss_pred             HHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence            99999999999999999999998776 345555555554

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.08  E-value=0.049  Score=34.23  Aligned_cols=54  Identities=15%  Similarity=0.019  Sum_probs=34.1

Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          236 VGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       236 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      ..|.+.+++++|.++++++...+ +.+...+.....++.+.|++++|.+.|+...
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l   56 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL   56 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence            35666677777777777766642 2244455556666667777777777777666

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.05  E-value=0.16  Score=41.15  Aligned_cols=96  Identities=11%  Similarity=0.006  Sum_probs=57.9

Q ss_pred             CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhccc---CchhhHHHH
Q 036263          161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG---CIEFARQVFQRMHK---RTLVSWNSI  234 (305)
Q Consensus       161 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~---~~~~~~~~l  234 (305)
                      |...|-.|-.+|...|+.+.|...|....+.. +++...+..+..++....   .-.++..+|+++.+   .|+.+-..|
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL  233 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL  233 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence            56666666666777777777766666666553 445555555555444332   24456666666653   244555556


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHC
Q 036263          235 IVGFAVNGFVGEALEYFNLMQKG  257 (305)
Q Consensus       235 i~~~~~~g~~~~a~~~~~~m~~~  257 (305)
                      ...+...|++.+|...|+.|.+.
T Consensus       234 A~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         234 AFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             HHHHHHcccHHHHHHHHHHHHhc
Confidence            66666677777777777776664

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.03  E-value=0.6  Score=37.42  Aligned_cols=189  Identities=10%  Similarity=0.055  Sum_probs=107.5

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDV  123 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~  123 (305)
                      +...+-.....+.+.|++++|.+.|+++...  .|+......              ..-.+..++.+.++++.|...+++
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~--------------a~l~la~ayy~~~~y~~A~~~~e~   94 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQ--------------VQLDLIYAYYKNADLPLAQAAIDR   94 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHH--------------HHHHHHHHHHhcCCHHHHHHHHHH
Confidence            3333334455556789999999999999874  444322111              112355677888999999988887


Q ss_pred             cCc------cccHHHHHHHHHcCCChHHHHHHHHHHH---HcCCCCC-----HHHHHHHHHHhcCcCChhHHHHHHHHHh
Q 036263          124 MRG------CDFWTALLNGFVKRDYFEEALEYFRVMQ---ISGVEPD-----YLTIISVLNVCANVRTLGIGLWMHRYVP  189 (305)
Q Consensus       124 ~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~  189 (305)
                      ..+      ..-|...+.+.+....   ....+....   .....++     ..++..++.-|-...-..+|...+..+.
T Consensus        95 fi~~~P~~~~~~~a~Y~~g~~~~~~---~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~  171 (243)
T PRK10866         95 FIRLNPTHPNIDYVLYMRGLTNMAL---DDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLK  171 (243)
T ss_pred             HHHhCcCCCchHHHHHHHHHhhhhc---chhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHH
Confidence            744      1113233333221000   000000000   0000000     1245555666666666666665555543


Q ss_pred             hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C----chhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036263          190 KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R----TLVSWNSIIVGFAVNGFVGEALEYFNLMQ  255 (305)
Q Consensus       190 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~  255 (305)
                      ..=    ...--.+.+-|.+.|.+..|..-++.+.+  |    .......++.+|...|..++|..+...+.
T Consensus       172 ~~l----a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        172 DRL----AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHH----HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            321    11122566778889999888888888874  2    34566778899999999999988776654

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.96  E-value=1.3  Score=40.64  Aligned_cols=27  Identities=11%  Similarity=0.086  Sum_probs=21.7

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHH
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTR   70 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~   70 (305)
                      +-.+|..+.......|+++-|..+++.
T Consensus       506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~  532 (829)
T KOG2280|consen  506 PGISYAAIARRAYQEGRFELARKLLEL  532 (829)
T ss_pred             CceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence            456788888888889999999888764

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.95  E-value=0.4  Score=34.65  Aligned_cols=127  Identities=16%  Similarity=0.170  Sum_probs=82.2

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHh
Q 036263          130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR  209 (305)
Q Consensus       130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  209 (305)
                      -..++..+...+.......+++.+...+ ..+....+.++..|++... ......++.      ..+......+++.|.+
T Consensus        10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~   81 (140)
T smart00299       10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEK   81 (140)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHH
Confidence            4457777777788888888888887776 3566778888888876533 333333332      1233344557777888


Q ss_pred             cCChHHHHHHHHhcccCchhhHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036263          210 FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVN-GFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH  275 (305)
Q Consensus       210 ~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~  275 (305)
                      .+.++++.-++.++..     |...+..+... ++++.|.+++.+-      -+...|..++..+..
T Consensus        82 ~~l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~  137 (140)
T smart00299       82 AKLYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD  137 (140)
T ss_pred             cCcHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence            8888888888877753     23334444444 7788888877751      255677777766654

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=95.87  E-value=0.5  Score=38.35  Aligned_cols=96  Identities=7%  Similarity=-0.002  Sum_probs=78.3

Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCCCHHHHH
Q 036263          194 KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVN---GFVGEALEYFNLMQKGVFKTDEVSFT  267 (305)
Q Consensus       194 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~~~~  267 (305)
                      +-|...|..|..+|...|+++.|..-|.+..+   ++...+..+..++...   .+-.++..+|+++.+.. +-|..+..
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~  231 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS  231 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence            67899999999999999999999999998874   5667777776665443   34568899999999853 23556677


Q ss_pred             HHHHHHhccCcHHHHHHHHHHHH
Q 036263          268 GALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       268 ~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      .|...+...|++.+|...|+.|.
T Consensus       232 lLA~~afe~g~~~~A~~~Wq~lL  254 (287)
T COG4235         232 LLAFAAFEQGDYAEAAAAWQMLL  254 (287)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHH
Confidence            77778999999999999999998

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=95.84  E-value=0.52  Score=38.97  Aligned_cols=147  Identities=11%  Similarity=0.038  Sum_probs=85.1

Q ss_pred             chHhHHHHHHHHHh--cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036263           44 TTVQWTSSISRHCR--SGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVF  121 (305)
Q Consensus        44 ~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~  121 (305)
                      ...++.+++..-..  ...+++.+.+++.|++.|.+-+..+|-+..-.......            -........|..+|
T Consensus        59 ~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~------------~~~~~~~~ra~~iy  126 (297)
T PF13170_consen   59 HRFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEK------------EDYDEIIQRAKEIY  126 (297)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhccc------------ccHHHHHHHHHHHH
Confidence            34444444443332  12245667889999999998888777553322111000            00012456788888


Q ss_pred             HhcCc---------cccHHHHHHHHHcCCC----hHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHhcCcCC--hhHHHHH
Q 036263          122 DVMRG---------CDFWTALLNGFVKRDY----FEEALEYFRVMQISGVEPD-Y-LTIISVLNVCANVRT--LGIGLWM  184 (305)
Q Consensus       122 ~~~~~---------~~~~~~li~~~~~~g~----~~~a~~~~~~m~~~g~~p~-~-~t~~~ll~~~~~~~~--~~~a~~~  184 (305)
                      +.|++         ..++..++..  ..++    .+.++.+|+.+.+.|+..+ . .....++..+.....  ...+..+
T Consensus       127 ~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l  204 (297)
T PF13170_consen  127 KEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIEL  204 (297)
T ss_pred             HHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHH
Confidence            88876         3334555443  3333    4567778888888887764 2 333333433332222  3467888


Q ss_pred             HHHHhhcCCCCChhHHHHHH
Q 036263          185 HRYVPKQDFKDNVRVCNTLM  204 (305)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~li  204 (305)
                      ++.+.+.|+++....|..+.
T Consensus       205 ~~~l~~~~~kik~~~yp~lG  224 (297)
T PF13170_consen  205 YNALKKNGVKIKYMHYPTLG  224 (297)
T ss_pred             HHHHHHcCCccccccccHHH
Confidence            88899999888777766553

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.83  E-value=0.19  Score=43.41  Aligned_cols=62  Identities=10%  Similarity=-0.042  Sum_probs=37.4

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhccc--Cch----hhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263          196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RTL----VSWNSIIVGFAVNGFVGEALEYFNLMQKG  257 (305)
Q Consensus       196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~  257 (305)
                      +...++.+..+|.+.|++++|...|++..+  |+.    .+|..+..+|...|+.++|.+.+++..+.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            455566666666666666666666666542  332    23666666666666666666666666553

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=95.80  E-value=0.46  Score=43.14  Aligned_cols=56  Identities=14%  Similarity=0.207  Sum_probs=35.5

Q ss_pred             CCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHH
Q 036263          193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNL  253 (305)
Q Consensus       193 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  253 (305)
                      ++-+....-.+.+++.+.|.-++|.+.|=+-..|-     ..+..|...++|.+|.++-++
T Consensus       848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~  903 (1189)
T KOG2041|consen  848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQR  903 (1189)
T ss_pred             cCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHh
Confidence            45556666677777777777777777666655442     234556666666666666554

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.75  E-value=0.49  Score=34.18  Aligned_cols=130  Identities=10%  Similarity=0.065  Sum_probs=79.4

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 036263           46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMR  125 (305)
Q Consensus        46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  125 (305)
                      ..-..+|..+...+.+......++.+...|. .+...++                  .++..|++.+ -....+.++.-.
T Consensus         8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~------------------~li~ly~~~~-~~~ll~~l~~~~   67 (140)
T smart00299        8 IDVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQT------------------KLIELYAKYD-PQKEIERLDNKS   67 (140)
T ss_pred             CCHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHH------------------HHHHHHHHHC-HHHHHHHHHhcc
Confidence            3445788888888999999999999887762 4444444                  4444555543 233444444222


Q ss_pred             ccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHH
Q 036263          126 GCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD  205 (305)
Q Consensus       126 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  205 (305)
                      .......+++.|.+.+.++++.-++..+..     .......++.   ..++.+.|.++..+-      .+...|..++.
T Consensus        68 ~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~-----~~~Al~~~l~---~~~d~~~a~~~~~~~------~~~~lw~~~~~  133 (140)
T smart00299       68 NHYDIEKVGKLCEKAKLYEEAVELYKKDGN-----FKDAIVTLIE---HLGNYEKAIEYFVKQ------NNPELWAEVLK  133 (140)
T ss_pred             ccCCHHHHHHHHHHcCcHHHHHHHHHhhcC-----HHHHHHHHHH---cccCHHHHHHHHHhC------CCHHHHHHHHH
Confidence            233345577777777878787777766532     1122223332   226777777777652      25667777777


Q ss_pred             HHHh
Q 036263          206 VYSR  209 (305)
Q Consensus       206 ~~~~  209 (305)
                      .+..
T Consensus       134 ~~l~  137 (140)
T smart00299      134 ALLD  137 (140)
T ss_pred             HHHc
Confidence            7654

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.74  E-value=0.74  Score=40.88  Aligned_cols=154  Identities=15%  Similarity=0.039  Sum_probs=107.9

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhcCc------------cccHHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCCH
Q 036263           99 MVSTALLDMYAKFGRMDLATVVFDVMRG------------CDFWTALLNGFVK----RDYFEEALEYFRVMQISGVEPDY  162 (305)
Q Consensus        99 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~------------~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~  162 (305)
                      ..+..++...+-.|+-+.+++.+....+            .-.|+.++..++.    ....+.|.+++..+.++  -|+.
T Consensus       189 p~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s  266 (468)
T PF10300_consen  189 PKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNS  266 (468)
T ss_pred             HHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCc
Confidence            3456677788888999999999887644            2236666665554    35678899999999875  7887


Q ss_pred             HHHHHHH-HHhcCcCChhHHHHHHHHHhhcC--C-CCChhHHHHHHHHHHhcCChHHHHHHHHhcccCc---hhhHHHHH
Q 036263          163 LTIISVL-NVCANVRTLGIGLWMHRYVPKQD--F-KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT---LVSWNSII  235 (305)
Q Consensus       163 ~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~~--~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li  235 (305)
                      ..|...- ..+...|++++|.+.++......  . +.....+--+.-.+.-.+++++|.+.|..+.+.+   ...|.-+.
T Consensus       267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~  346 (468)
T PF10300_consen  267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA  346 (468)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            7775443 34567899999999999765321  1 1233445556777888899999999999998642   33444433


Q ss_pred             HH-HHhcCCh-------HHHHHHHHHH
Q 036263          236 VG-FAVNGFV-------GEALEYFNLM  254 (305)
Q Consensus       236 ~~-~~~~g~~-------~~a~~~~~~m  254 (305)
                      .+ +...|+.       ++|.++|++.
T Consensus       347 a~c~~~l~~~~~~~~~~~~a~~l~~~v  373 (468)
T PF10300_consen  347 AACLLMLGREEEAKEHKKEAEELFRKV  373 (468)
T ss_pred             HHHHHhhccchhhhhhHHHHHHHHHHH
Confidence            32 4456777       8888888775

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.73  E-value=0.18  Score=42.48  Aligned_cols=94  Identities=13%  Similarity=0.054  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHH
Q 036263          162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGF  238 (305)
Q Consensus       162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~  238 (305)
                      ...+..+..++.+.+++..|.+.-......+ +.|....--=..+|...|+++.|+..|+++.+  | |-..-+.++...
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~  335 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLK  335 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            3456666677777777777777777777766 66666666667777777777777777777763  4 333333344333


Q ss_pred             HhcCChH-HHHHHHHHHHH
Q 036263          239 AVNGFVG-EALEYFNLMQK  256 (305)
Q Consensus       239 ~~~g~~~-~a~~~~~~m~~  256 (305)
                      -+...+. ...++|..|-.
T Consensus       336 ~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  336 QKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            3333333 33566666654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.72  E-value=0.2  Score=43.27  Aligned_cols=61  Identities=11%  Similarity=-0.039  Sum_probs=38.9

Q ss_pred             cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHhcCcCChhHHHHHHHHHhhc
Q 036263          129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDY----LTIISVLNVCANVRTLGIGLWMHRYVPKQ  191 (305)
Q Consensus       129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~  191 (305)
                      .|+.+..+|.+.|++++|+..|++..+  +.|+.    .+|..+..+|...|+.++|...+++..+.
T Consensus        77 a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         77 DAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            366666677777777777777766555  34542    34666666666677777777766666554

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=95.69  E-value=0.6  Score=34.79  Aligned_cols=133  Identities=13%  Similarity=0.068  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC--hHHHHHHHHhc
Q 036263          146 ALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC--IEFARQVFQRM  223 (305)
Q Consensus       146 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~  223 (305)
                      ..++++.+.+.|+.|+...+..+++.+.+.|++....+    +...++-+|.......+-.+.....  .+-|.+++.++
T Consensus        13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL   88 (167)
T PF07035_consen   13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL   88 (167)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence            34667777888999999999999999999998765444    4556666776665555544433221  33444455544


Q ss_pred             ccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          224 HKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       224 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      .    ..+..+++.+...|++-+|..+.+...... .++   -..++.+-.+.++...-..+++-..
T Consensus        89 ~----~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~~---~~~fLeAA~~~~D~~lf~~V~~ff~  147 (167)
T PF07035_consen   89 G----TAYEEIIEVLLSKGQVLEALRYARQYHKVD-SVP---ARKFLEAAANSNDDQLFYAVFRFFE  147 (167)
T ss_pred             h----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cCC---HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4    346677888999999999999988864432 122   2456777777777777777777666

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=95.63  E-value=0.26  Score=40.71  Aligned_cols=145  Identities=12%  Similarity=0.111  Sum_probs=77.2

Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC--cCC----hhHHHHHHHHHhhcCC---CCChhHHHHHHHHHHhcCC-
Q 036263          143 FEEALEYFRVMQISGVEPDYLTIISVLNVCAN--VRT----LGIGLWMHRYVPKQDF---KDNVRVCNTLMDVYSRFGC-  212 (305)
Q Consensus       143 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~~----~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~-  212 (305)
                      +++.+.+++.|.+.|+.-+..+|-+.......  ..+    ...+..+++.|.+...   .++...+..++..  ..++ 
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            45566777888888888777776653333222  222    3457788888877642   2334455555443  3333 


Q ss_pred             ---hHHHHHHHHhccc-----C-chhhHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 036263          213 ---IEFARQVFQRMHK-----R-TLVSWNSIIVGFAVNGF--VGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIED  281 (305)
Q Consensus       213 ---~~~a~~~~~~~~~-----~-~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  281 (305)
                         .+.++.+|+.+.+     . +....+.++..+-....  ...+.++++.+.+.|+++....|..+.-...-.+..+.
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~  235 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK  235 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence               3445666666653     1 22333333332222222  34677778888888888777776554333323333324


Q ss_pred             HHHHHHHH
Q 036263          282 GLQYFDIM  289 (305)
Q Consensus       282 a~~~~~~m  289 (305)
                      ...-+.++
T Consensus       236 ~~~~i~ev  243 (297)
T PF13170_consen  236 IVEEIKEV  243 (297)
T ss_pred             HHHHHHHH
Confidence            44333333

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=95.62  E-value=1.2  Score=37.74  Aligned_cols=210  Identities=14%  Similarity=0.042  Sum_probs=111.0

Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccH
Q 036263           56 CRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFW  130 (305)
Q Consensus        56 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~  130 (305)
                      .-.|+++.|.+-|+-|..   .|  .|--.=++++              .-..-+.|+.+.|...-+..-.     ...+
T Consensus       131 l~eG~~~~Ar~kfeAMl~---dP--EtRllGLRgL--------------yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~  191 (531)
T COG3898         131 LLEGDYEDARKKFEAMLD---DP--ETRLLGLRGL--------------YLEAQRLGAREAARHYAERAAEKAPQLPWAA  191 (531)
T ss_pred             HhcCchHHHHHHHHHHhc---Ch--HHHHHhHHHH--------------HHHHHhcccHHHHHHHHHHHHhhccCCchHH
Confidence            347999999999999975   23  2222222221              1112234555544444433322     2334


Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHcC---------------------------------------CCCCHH-HHHHHHH
Q 036263          131 TALLNGFVKRDYFEEALEYFRVMQISG---------------------------------------VEPDYL-TIISVLN  170 (305)
Q Consensus       131 ~~li~~~~~~g~~~~a~~~~~~m~~~g---------------------------------------~~p~~~-t~~~ll~  170 (305)
                      ...+...+..|+|+.|+++++.-++..                                       +.||.. .-..-..
T Consensus       192 ~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAr  271 (531)
T COG3898         192 RATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAAR  271 (531)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHH
Confidence            555555666666666666655443321                                       233311 1222234


Q ss_pred             HhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHH--H--HHHHHhcccCchhhHHHHHHHHHhcCChHH
Q 036263          171 VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF--A--RQVFQRMHKRTLVSWNSIIVGFAVNGFVGE  246 (305)
Q Consensus       171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~--a--~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  246 (305)
                      ++.+.|+..++-.+++.+=+....|+  .+  .+..+.+.|+...  .  .+-++.|+..+..+--.+..+-...|++..
T Consensus       272 alf~d~~~rKg~~ilE~aWK~ePHP~--ia--~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~  347 (531)
T COG3898         272 ALFRDGNLRKGSKILETAWKAEPHPD--IA--LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSA  347 (531)
T ss_pred             HHHhccchhhhhhHHHHHHhcCCChH--HH--HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHH
Confidence            45566666666666666655432222  22  2222344444211  1  122344445566666777777777788777


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCcHHHHHHHHHHHH
Q 036263          247 ALEYFNLMQKGVFKTDEVSFTGALTACS-HAGLIEDGLQYFDIMK  290 (305)
Q Consensus       247 a~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~  290 (305)
                      |..--+....  ..|....|..+...-. ..|+-.++..++-+..
T Consensus       348 ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav  390 (531)
T COG3898         348 ARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAV  390 (531)
T ss_pred             HHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence            7766655554  4577777777666443 4488888777777665

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.59  E-value=1.1  Score=41.53  Aligned_cols=226  Identities=11%  Similarity=0.024  Sum_probs=135.9

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC---CChhHHHHHHHHHHhcCChHHHHHH
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---NNVMVSTALLDMYAKFGRMDLATVV  120 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~  120 (305)
                      ...+.+.++.++...+++-.-.-++++..+.     ..+|..-+-.....+.   ........-++.+++..-++.|..+
T Consensus       282 s~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~-----l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~L  356 (933)
T KOG2114|consen  282 SNSSSNRIFKAYDLRNRYVLYSSVLEDLSDN-----LIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINL  356 (933)
T ss_pred             CccchhheeehhhhcCcccchHHhHHHHHHH-----HHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHH
Confidence            3456677888888877765444444443221     0000000000000111   1122334556667788888888888


Q ss_pred             HHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCC
Q 036263          121 FDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD  195 (305)
Q Consensus       121 ~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  195 (305)
                      -+.-..     .........-+.+.|++++|...|-+-... ++|+     .++.-+.+..+...-..+++.+.+.|+ .
T Consensus       357 Ak~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gl-a  429 (933)
T KOG2114|consen  357 AKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGL-A  429 (933)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHccc-c
Confidence            766544     223444556677889999999888664432 3443     345566788888888899999999995 5


Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhcccCch-hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 036263          196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL-VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS  274 (305)
Q Consensus       196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~  274 (305)
                      +...-+.|+.+|.+.++.++-.++.+...+... .-....+..+.+.+-.++|.-+-.+...     +......++.   
T Consensus       430 ~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ille---  501 (933)
T KOG2114|consen  430 NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILLE---  501 (933)
T ss_pred             cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHHH---
Confidence            677788999999999999999988887773211 1244556666666666666655444332     2333333333   


Q ss_pred             ccCcHHHHHHHHHHH
Q 036263          275 HAGLIEDGLQYFDIM  289 (305)
Q Consensus       275 ~~g~~~~a~~~~~~m  289 (305)
                      ..|++++|.++++.+
T Consensus       502 ~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  502 DLHNYEEALRYISSL  516 (933)
T ss_pred             HhcCHHHHHHHHhcC
Confidence            346667776666544

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=95.56  E-value=1.2  Score=37.18  Aligned_cols=154  Identities=14%  Similarity=0.075  Sum_probs=85.8

Q ss_pred             HHHHhcCChHHHHHHHHhcCc--cccHHHHH---HHHHcCCChHHHHHHHHHHHHcCCCCCHH----------------H
Q 036263          106 DMYAKFGRMDLATVVFDVMRG--CDFWTALL---NGFVKRDYFEEALEYFRVMQISGVEPDYL----------------T  164 (305)
Q Consensus       106 ~~~~~~g~~~~a~~~~~~~~~--~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----------------t  164 (305)
                      ..|...|+-..|+.-+.++.+  ...+.+-+   ..+.+.|.++.|..=|+......  |+..                .
T Consensus        80 T~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~  157 (504)
T KOG0624|consen   80 TVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWV  157 (504)
T ss_pred             HHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHH
Confidence            344444555555444444433  22222222   34566677777777777666542  2110                1


Q ss_pred             HHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc---cCchhhHHHHHHHHHhc
Q 036263          165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH---KRTLVSWNSIIVGFAVN  241 (305)
Q Consensus       165 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~  241 (305)
                      ....+..+...|+...|......+.+-. +.|+..|..=..+|...|++..|..=++...   ..+..++--+-..+...
T Consensus       158 l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v  236 (504)
T KOG0624|consen  158 LVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV  236 (504)
T ss_pred             HHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Confidence            2223344555666666666666666653 5566666666677777777777665554443   34555555566666667


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHH
Q 036263          242 GFVGEALEYFNLMQKGVFKTDEV  264 (305)
Q Consensus       242 g~~~~a~~~~~~m~~~g~~p~~~  264 (305)
                      |+.+.++...++..+  +.||..
T Consensus       237 gd~~~sL~~iRECLK--ldpdHK  257 (504)
T KOG0624|consen  237 GDAENSLKEIRECLK--LDPDHK  257 (504)
T ss_pred             hhHHHHHHHHHHHHc--cCcchh
Confidence            777777766666666  345553

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.48  E-value=0.69  Score=40.52  Aligned_cols=92  Identities=10%  Similarity=-0.019  Sum_probs=74.1

Q ss_pred             HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh
Q 036263          134 LNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI  213 (305)
Q Consensus       134 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  213 (305)
                      ...+.+.|++..|+..|.++.... +-|...|.....+|.+.|.+..|..=-+..++.. ++....|.--..++....++
T Consensus       365 Gne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~y  442 (539)
T KOG0548|consen  365 GNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEY  442 (539)
T ss_pred             HHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHH
Confidence            567888999999999999998874 3378889999999999999999988777777764 44556666666666667789


Q ss_pred             HHHHHHHHhcccCc
Q 036263          214 EFARQVFQRMHKRT  227 (305)
Q Consensus       214 ~~a~~~~~~~~~~~  227 (305)
                      ++|.+.|++..+.|
T Consensus       443 dkAleay~eale~d  456 (539)
T KOG0548|consen  443 DKALEAYQEALELD  456 (539)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999988654

>PRK15331 chaperone protein SicA; Provisional

Probab=94.98  E-value=0.48  Score=35.01  Aligned_cols=84  Identities=14%  Similarity=-0.030  Sum_probs=48.1

Q ss_pred             hcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc---cCchhhHHHHHHHHHhcCChHHHH
Q 036263          172 CANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEAL  248 (305)
Q Consensus       172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~  248 (305)
                      +...|++++|..+|+-+.-.+ +.+..-+..|..++-..+++++|...|...-   ..|...+-....+|...|+.+.|.
T Consensus        47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~  125 (165)
T PRK15331         47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR  125 (165)
T ss_pred             HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence            345666666666666665554 3344445555555666666666666665443   234444444556666666666666


Q ss_pred             HHHHHHHH
Q 036263          249 EYFNLMQK  256 (305)
Q Consensus       249 ~~~~~m~~  256 (305)
                      ..|+....
T Consensus       126 ~~f~~a~~  133 (165)
T PRK15331        126 QCFELVNE  133 (165)
T ss_pred             HHHHHHHh
Confidence            66665555

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.94  E-value=3  Score=38.40  Aligned_cols=85  Identities=12%  Similarity=0.105  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 036263          199 VCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL  278 (305)
Q Consensus       199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  278 (305)
                      +.+--+.-+...|+..+|.++-++.+-||...|..=+.+++..++|++-.++-+.++.      +.-|..++.+|.+.|+
T Consensus       686 Sl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n  759 (829)
T KOG2280|consen  686 SLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGN  759 (829)
T ss_pred             cHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhccc
Confidence            3444455566778888888888888888888888888888888888877776665442      2445556677777777


Q ss_pred             HHHHHHHHHHH
Q 036263          279 IEDGLQYFDIM  289 (305)
Q Consensus       279 ~~~a~~~~~~m  289 (305)
                      .++|.+++...
T Consensus       760 ~~EA~KYiprv  770 (829)
T KOG2280|consen  760 KDEAKKYIPRV  770 (829)
T ss_pred             HHHHhhhhhcc
Confidence            77777666544

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.87  E-value=1.2  Score=36.98  Aligned_cols=53  Identities=4%  Similarity=-0.093  Sum_probs=25.0

Q ss_pred             HhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263          171 VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH  224 (305)
Q Consensus       171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  224 (305)
                      ++...|-+++|++.-++..+.+ +.|.....++...+--.|++.++.++..+-.
T Consensus       184 gL~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te  236 (491)
T KOG2610|consen  184 GLEECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTE  236 (491)
T ss_pred             hHHHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence            3344455555555544444433 3344444444444444555555555544443

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=94.65  E-value=1.1  Score=31.87  Aligned_cols=64  Identities=8%  Similarity=-0.007  Sum_probs=45.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCC
Q 036263          231 WNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVS  296 (305)
Q Consensus       231 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~  296 (305)
                      +...+.....+|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.+.- +.|++
T Consensus        89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC-ekG~k  152 (161)
T PF09205_consen   89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEAC-EKGLK  152 (161)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH-HTT-H
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH-HhchH
Confidence            445677788889989888888887753 35788888888999999999999999998887 66653

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.46  E-value=2  Score=34.10  Aligned_cols=183  Identities=11%  Similarity=0.038  Sum_probs=97.3

Q ss_pred             HHHHHHHhcCChHHHHHHHHhcCc-----------cccHHHHHHHHHcCCChHHHHHHHHHHH----HcCCCCCHHHHH-
Q 036263          103 ALLDMYAKFGRMDLATVVFDVMRG-----------CDFWTALLNGFVKRDYFEEALEYFRVMQ----ISGVEPDYLTII-  166 (305)
Q Consensus       103 ~ll~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~g~~p~~~t~~-  166 (305)
                      -...+|....+++.|...+....+           .-.|...+-..-....+.++..++++..    +.| .|+..... 
T Consensus        36 kAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G-spdtAAmal  114 (308)
T KOG1585|consen   36 KAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG-SPDTAAMAL  114 (308)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CcchHHHHH
Confidence            334445566677776666555432           1123333333334444555555554432    223 33332211 


Q ss_pred             HHHHHhcCcCChhHHHHHHHHHhhc---C--CCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--------Cch-hhHH
Q 036263          167 SVLNVCANVRTLGIGLWMHRYVPKQ---D--FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--------RTL-VSWN  232 (305)
Q Consensus       167 ~ll~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------~~~-~~~~  232 (305)
                      --..-....-++++|.+++++...-   +  ...-...+..+-+.+.+..++++|...+.+-..        ++. ..|-
T Consensus       115 eKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~v  194 (308)
T KOG1585|consen  115 EKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYV  194 (308)
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHH
Confidence            0011123445566666666654321   1  111223455556666677777776665554432        111 2355


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 036263          233 SIIVGFAVNGFVGEALEYFNLMQKGV--F-KTDEVSFTGALTACSHAGLIEDGLQYFD  287 (305)
Q Consensus       233 ~li~~~~~~g~~~~a~~~~~~m~~~g--~-~p~~~~~~~li~~~~~~g~~~~a~~~~~  287 (305)
                      ..|-.+.-..|+..|...++.--+.+  . .-+..+...|+.+|- .|+.+++..++.
T Consensus       195 a~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl~  251 (308)
T KOG1585|consen  195 AAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVLS  251 (308)
T ss_pred             HHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHHc
Confidence            56666777789999999998854432  2 225578888888884 588888777654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=94.37  E-value=0.84  Score=41.19  Aligned_cols=88  Identities=8%  Similarity=0.085  Sum_probs=65.5

Q ss_pred             CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--Cchh---------
Q 036263          161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RTLV---------  229 (305)
Q Consensus       161 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~---------  229 (305)
                      +..+...+...+.+...+..|.++|..|-..         ..+++.....+++.+|..+-++.++  +|+.         
T Consensus       746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE  816 (1081)
T KOG1538|consen  746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAE  816 (1081)
T ss_pred             hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhh
Confidence            3455666666667778888888998887543         3567888899999999999998875  3332         


Q ss_pred             --hHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263          230 --SWNSIIVGFAVNGFVGEALEYFNLMQKG  257 (305)
Q Consensus       230 --~~~~li~~~~~~g~~~~a~~~~~~m~~~  257 (305)
                        -|...-++|.+.|+-.+|..+++++...
T Consensus       817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn  846 (1081)
T KOG1538|consen  817 NDRFEEAQKAFHKAGRQREAVQVLEQLTNN  846 (1081)
T ss_pred             hhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence              2445567789999999999999987653

>PRK15331 chaperone protein SicA; Provisional

Probab=94.31  E-value=0.59  Score=34.57  Aligned_cols=90  Identities=16%  Similarity=0.100  Sum_probs=64.1

Q ss_pred             HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh
Q 036263          134 LNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI  213 (305)
Q Consensus       134 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  213 (305)
                      ...+...|++++|..+|+-+...+. -+..-+..|-.++-..+++++|...|......+ .-|...+-....+|...|+.
T Consensus        44 Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~  121 (165)
T PRK15331         44 AYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA  121 (165)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence            3445567888999888888766431 234445666666777888899998888776654 34444556667888888999


Q ss_pred             HHHHHHHHhccc
Q 036263          214 EFARQVFQRMHK  225 (305)
Q Consensus       214 ~~a~~~~~~~~~  225 (305)
                      +.|...|+...+
T Consensus       122 ~~A~~~f~~a~~  133 (165)
T PRK15331        122 AKARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHHh
Confidence            999998887764

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=94.18  E-value=4.4  Score=39.43  Aligned_cols=125  Identities=13%  Similarity=0.061  Sum_probs=65.8

Q ss_pred             CChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHH----HHhcCcCChhHHHHHHHH
Q 036263          112 GRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVL----NVCANVRTLGIGLWMHRY  187 (305)
Q Consensus       112 g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll----~~~~~~~~~~~a~~~~~~  187 (305)
                      ++++.|+.-+..+. ...|.-.+..--+.|-+.+|+.++        .|+...+..+.    +.+...+.+++|.-+|+.
T Consensus       894 ~ry~~AL~hLs~~~-~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~  964 (1265)
T KOG1920|consen  894 KRYEDALSHLSECG-ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYER  964 (1265)
T ss_pred             HHHHHHHHHHHHcC-ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            45555555554443 223444444444555555555544        34444444333    334455666666666655


Q ss_pred             HhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhH---HHHHHHHHhcCChHHHHHHHHHH
Q 036263          188 VPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSW---NSIIVGFAVNGFVGEALEYFNLM  254 (305)
Q Consensus       188 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m  254 (305)
                      .-+.         .-.+.+|..+|+|++|..+..++..+-....   ..|+.-+...++.-+|-++..+-
T Consensus       965 ~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen  965 CGKL---------EKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred             hccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence            4221         2335667777777777777776664322222   45555566666666655555544

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.12  E-value=0.54  Score=37.65  Aligned_cols=93  Identities=15%  Similarity=0.067  Sum_probs=58.7

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc
Q 036263           47 QWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG  126 (305)
Q Consensus        47 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  126 (305)
                      .|+.-+..+ +.|++.+|...|....+..  |+.. |             ....+--|..++...|++++|..+|..+.+
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~Y--P~s~-~-------------~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k  206 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKY--PNST-Y-------------TPNAYYWLGESLYAQGDYEDAAYIFARVVK  206 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcC--CCCc-c-------------cchhHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            577776655 5677999999998888752  2211 1             111223356667777777777777766633


Q ss_pred             --------cccHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 036263          127 --------CDFWTALLNGFVKRDYFEEALEYFRVMQIS  156 (305)
Q Consensus       127 --------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  156 (305)
                              ...+--|..+..+.|+.++|..+|++..++
T Consensus       207 ~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         207 DYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             hCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence                    345666666666677777777777666554

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=94.12  E-value=2.4  Score=33.80  Aligned_cols=56  Identities=13%  Similarity=0.159  Sum_probs=41.9

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          234 IIVGFAVNGFVGEALEYFNLMQKGVFKTDE---VSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       234 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      +.+-|.+.|.+..|..-+++|.+. .+-..   ..+-.+..+|...|-.++|...-+-+.
T Consensus       173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~  231 (254)
T COG4105         173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG  231 (254)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            345588899999999999999886 32222   445666778888999888888877666

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=94.07  E-value=1.5  Score=31.18  Aligned_cols=60  Identities=8%  Similarity=0.033  Sum_probs=28.2

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcC
Q 036263          132 ALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD  192 (305)
Q Consensus       132 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~  192 (305)
                      .-+..+...|+-+.-.++++++.+. -+++......+..||.+.|+..++.+++.+.-+.|
T Consensus        91 ~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG  150 (161)
T PF09205_consen   91 LALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG  150 (161)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence            3344555555555555555554431 24445555555555555555555555555555555

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=94.01  E-value=3.8  Score=35.62  Aligned_cols=143  Identities=13%  Similarity=0.086  Sum_probs=110.6

Q ss_pred             cccHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHH-HHHH
Q 036263          127 CDFWTALLNGFVKRDYFEEALEYFRVMQISG-VEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC-NTLM  204 (305)
Q Consensus       127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li  204 (305)
                      ..+|...+..-.+..-++.|..+|-+..+.| +.++...++++|..++ .|+...|..+|+.-...  -||...| +-.+
T Consensus       397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl  473 (660)
T COG5107         397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL  473 (660)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence            5568888888888888999999999999998 6678889999998665 56777888998876554  2444444 5567


Q ss_pred             HHHHhcCChHHHHHHHHhcccC---c--hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 036263          205 DVYSRFGCIEFARQVFQRMHKR---T--LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS  274 (305)
Q Consensus       205 ~~~~~~g~~~~a~~~~~~~~~~---~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~  274 (305)
                      ..+...++-+.|..+|+....+   +  ...|..+|.--..-|+...+..+=++|..  +-|-..+......-|.
T Consensus       474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~  546 (660)
T COG5107         474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA  546 (660)
T ss_pred             HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence            7788899999999999965532   2  46899999988899999999888888887  4566656555555443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=93.81  E-value=1.2  Score=37.74  Aligned_cols=134  Identities=10%  Similarity=-0.040  Sum_probs=86.9

Q ss_pred             HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh
Q 036263          134 LNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI  213 (305)
Q Consensus       134 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  213 (305)
                      ...+.+.|++..|..-|++.... + .           +.+.-+.++.....        ..-..++..+.-+|.+.+++
T Consensus       215 Gn~~fK~gk~~~A~~~Yerav~~-l-~-----------~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~~~  273 (397)
T KOG0543|consen  215 GNVLFKEGKFKLAKKRYERAVSF-L-E-----------YRRSFDEEEQKKAE--------ALKLACHLNLAACYLKLKEY  273 (397)
T ss_pred             hhHHHhhchHHHHHHHHHHHHHH-h-h-----------ccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhhhH
Confidence            45677888888888887765431 0 0           01111112222111        12245677788889999999


Q ss_pred             HHHHHHHHhcc---cCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhccCcH-HHHHHHHHH
Q 036263          214 EFARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG-ALTACSHAGLI-EDGLQYFDI  288 (305)
Q Consensus       214 ~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-li~~~~~~g~~-~~a~~~~~~  288 (305)
                      .+|.+.-....   .+|+...-.=..+|...|+++.|...|+++++  +.|+...... |+..-.+.... +...++|..
T Consensus       274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~  351 (397)
T KOG0543|consen  274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYAN  351 (397)
T ss_pred             HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988887766   35776666778889999999999999999998  5676655544 44444444433 344778887


Q ss_pred             HH
Q 036263          289 MK  290 (305)
Q Consensus       289 m~  290 (305)
                      |-
T Consensus       352 mF  353 (397)
T KOG0543|consen  352 MF  353 (397)
T ss_pred             Hh
Confidence            76

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.80  E-value=0.9  Score=36.97  Aligned_cols=76  Identities=11%  Similarity=0.108  Sum_probs=54.1

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 036263          197 VRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQK-----GVFKTDEVSFTG  268 (305)
Q Consensus       197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~  268 (305)
                      ..++..++..+...|+++.+.+.++++..  | +...|..++.+|.+.|+...|...|+.+.+     .|+.|...+...
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            34566677777777777777777777763  2 556777777888888877777777777654     478887777666


Q ss_pred             HHHH
Q 036263          269 ALTA  272 (305)
Q Consensus       269 li~~  272 (305)
                      ....
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            6655

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.80  E-value=1.2  Score=35.72  Aligned_cols=95  Identities=18%  Similarity=0.159  Sum_probs=66.6

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhccc--C----chhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC-CHHHHHHH
Q 036263          198 RVCNTLMDVYSRFGCIEFARQVFQRMHK--R----TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV-FKT-DEVSFTGA  269 (305)
Q Consensus       198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p-~~~~~~~l  269 (305)
                      ..|+.-+..| +.|++.+|..-|....+  |    ....+--|..++...|++++|..+|..+.+.- -.| -+.++-.|
T Consensus       143 ~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         143 KLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            3577766654 55668888888887764  2    22345557888888888888888888877642 112 22566677


Q ss_pred             HHHHhccCcHHHHHHHHHHHHHHh
Q 036263          270 LTACSHAGLIEDGLQYFDIMKKIY  293 (305)
Q Consensus       270 i~~~~~~g~~~~a~~~~~~m~~~~  293 (305)
                      ..+..+.|+.++|..+|+++.+++
T Consensus       222 g~~~~~l~~~d~A~atl~qv~k~Y  245 (262)
T COG1729         222 GVSLGRLGNTDEACATLQQVIKRY  245 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHC
Confidence            777788888888888888887544

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=93.67  E-value=1.9  Score=31.11  Aligned_cols=50  Identities=14%  Similarity=0.111  Sum_probs=26.6

Q ss_pred             HhcCChHHHHHHHHhcccC------chhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263          208 SRFGCIEFARQVFQRMHKR------TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG  257 (305)
Q Consensus       208 ~~~g~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  257 (305)
                      .+.|++++|.+.|+.+...      ....--.++.+|.+.+++++|...+++..+.
T Consensus        21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL   76 (142)
T PF13512_consen   21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL   76 (142)
T ss_pred             HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            3445566666655555531      2233444555566666666666666555553

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.56  E-value=0.81  Score=34.65  Aligned_cols=61  Identities=15%  Similarity=0.047  Sum_probs=34.4

Q ss_pred             cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhcCcCChhHHHHHHHHHh
Q 036263          129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPD--YLTIISVLNVCANVRTLGIGLWMHRYVP  189 (305)
Q Consensus       129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~  189 (305)
                      .+..+...|.+.|+.+.|++.|.++.+....|.  ...+-.+|......+++..+.....+..
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~  100 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE  100 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            355556666666666666666666655443332  3344555666666666666655555443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.48  E-value=2.9  Score=34.86  Aligned_cols=150  Identities=11%  Similarity=-0.030  Sum_probs=90.7

Q ss_pred             HcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhc---CCCCChhHHHHHHHHHHhcCChH
Q 036263          138 VKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ---DFKDNVRVCNTLMDVYSRFGCIE  214 (305)
Q Consensus       138 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~  214 (305)
                      ...|++.+|...|+++.+. .+-|...+.-.=++|...|+.+.-...++++...   ++|....+-....-++..+|-++
T Consensus       114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~  192 (491)
T KOG2610|consen  114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD  192 (491)
T ss_pred             hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence            3467777777778777654 3446677777777888888877777777776543   33333333344455566778888


Q ss_pred             HHHHHHHhcccC---chhhHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 036263          215 FARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG---VFKTDEVSFTGALTACSHAGLIEDGLQYFDI  288 (305)
Q Consensus       215 ~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  288 (305)
                      +|++.-++..+-   |.....+....+-..|+..++.++..+-...   +.-.-.+-|....-.+...+.++.|+++|+.
T Consensus       193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~  272 (491)
T KOG2610|consen  193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR  272 (491)
T ss_pred             hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence            888887777642   4445555556666666676666665442211   1111223444455555556667777766663

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.42  E-value=0.13  Score=37.40  Aligned_cols=128  Identities=16%  Similarity=0.137  Sum_probs=68.9

Q ss_pred             HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC
Q 036263          133 LLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC  212 (305)
Q Consensus       133 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  212 (305)
                      +|..+.+.+.++....+++.+...+..-+....+.++..|++.+..+....+++..       +..-...++..|.+.|.
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l   85 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL   85 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence            45556666677777777777776555556677777777777777666666665511       11223445566666666


Q ss_pred             hHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 036263          213 IEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL  278 (305)
Q Consensus       213 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  278 (305)
                      +++|.-++.++...+..     +..+...++++.|.+++.+      .++...|..++..|...+.
T Consensus        86 ~~~a~~Ly~~~~~~~~a-----l~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~  140 (143)
T PF00637_consen   86 YEEAVYLYSKLGNHDEA-----LEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP  140 (143)
T ss_dssp             HHHHHHHHHCCTTHTTC-----SSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred             HHHHHHHHHHcccHHHH-----HHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence            66666666655421110     0012222333333322211      2346777777777766543

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.28  E-value=1.1  Score=36.74  Aligned_cols=98  Identities=11%  Similarity=0.002  Sum_probs=53.6

Q ss_pred             CCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc-Cch-----hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 036263          192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK-RTL-----VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS  265 (305)
Q Consensus       192 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~  265 (305)
                      |.+....+...++..-....+++.++..+-++.. |+.     .+-...++ ++..-++++++.++..=...|+-||..+
T Consensus        59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~ir-lllky~pq~~i~~l~npIqYGiF~dqf~  137 (418)
T KOG4570|consen   59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQFT  137 (418)
T ss_pred             CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHH-HHHccChHHHHHHHhCcchhccccchhh
Confidence            3444455555555555555566666666655552 111     01111122 2223355666666666666677777777


Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          266 FTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       266 ~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      +..++..+.+.+++.+|..+.-.|.
T Consensus       138 ~c~l~D~flk~~n~~~aa~vvt~~~  162 (418)
T KOG4570|consen  138 FCLLMDSFLKKENYKDAASVVTEVM  162 (418)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHH
Confidence            7777777777777666666555544

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.23  E-value=0.26  Score=26.06  Aligned_cols=23  Identities=22%  Similarity=0.319  Sum_probs=12.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHH
Q 036263          231 WNSIIVGFAVNGFVGEALEYFNL  253 (305)
Q Consensus       231 ~~~li~~~~~~g~~~~a~~~~~~  253 (305)
                      |+.|...|.+.|++++|.+++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            44555556666666666666555

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.20  E-value=0.66  Score=37.72  Aligned_cols=72  Identities=14%  Similarity=0.177  Sum_probs=62.0

Q ss_pred             hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH----HhCCCCCcc
Q 036263          228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK----IYRVSPQIE  300 (305)
Q Consensus       228 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~p~~~  300 (305)
                      ..++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+    ..|+.|..+
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~  228 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPE  228 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHH
Confidence            4567888999999999999999999999864 45889999999999999999999999998874    467777654

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.12  E-value=3.5  Score=32.76  Aligned_cols=137  Identities=11%  Similarity=0.091  Sum_probs=70.6

Q ss_pred             HHHHHHhcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHc---C--CCCCHHHHHHHHHHhcCcCCh
Q 036263          104 LLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQIS---G--VEPDYLTIISVLNVCANVRTL  178 (305)
Q Consensus       104 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g--~~p~~~t~~~ll~~~~~~~~~  178 (305)
                      ....|..+|..+.|-..+++.-+          ....-++++|++++.+-..-   +  .+.-...+..+-..+.+...+
T Consensus        97 As~lY~E~GspdtAAmaleKAak----------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf  166 (308)
T KOG1585|consen   97 ASELYVECGSPDTAAMALEKAAK----------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF  166 (308)
T ss_pred             HHHHHHHhCCcchHHHHHHHHHH----------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence            33445666666555555544321          12234455555555543221   0  011123345555556666666


Q ss_pred             hHHHHHHHHHh----hcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhccc-------CchhhHHHHHHHHHhcCChHH
Q 036263          179 GIGLWMHRYVP----KQDFKDN-VRVCNTLMDVYSRFGCIEFARQVFQRMHK-------RTLVSWNSIIVGFAVNGFVGE  246 (305)
Q Consensus       179 ~~a~~~~~~~~----~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~  246 (305)
                      ++|-..+..-.    +..-.++ -..|-..|-.|....++..|.+.++.-.+       .+..+...|+.+|- .||.++
T Consensus       167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~  245 (308)
T KOG1585|consen  167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEE  245 (308)
T ss_pred             hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHH
Confidence            66555443321    1111122 23455666666667778888888877332       25567777777763 566666


Q ss_pred             HHHHH
Q 036263          247 ALEYF  251 (305)
Q Consensus       247 a~~~~  251 (305)
                      +.+++
T Consensus       246 ~~kvl  250 (308)
T KOG1585|consen  246 IKKVL  250 (308)
T ss_pred             HHHHH
Confidence            65554

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=92.95  E-value=3.5  Score=32.00  Aligned_cols=169  Identities=12%  Similarity=0.038  Sum_probs=100.6

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc---
Q 036263           50 SSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG---  126 (305)
Q Consensus        50 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---  126 (305)
                      .....+...|++++|.+.|+.+...  -|++..-              ....-.+..++-+.|+++.|...++++..   
T Consensus        10 ~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a--------------~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP   73 (203)
T PF13525_consen   10 QKALEALQQGDYEEAIKLFEKLIDR--YPNSPYA--------------PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP   73 (203)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTH--------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHH--CCCChHH--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence            4455667899999999999999875  3332211              11223467778999999999999888643   


Q ss_pred             ---cccHHHHHHHHHcCCChHHHHHHHHHHHHc-CCCCC-------HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCC
Q 036263          127 ---CDFWTALLNGFVKRDYFEEALEYFRVMQIS-GVEPD-------YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD  195 (305)
Q Consensus       127 ---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~-------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  195 (305)
                         ...+...+.+.+          .+...... ....|       ...|..++.-|-......+|...+..+.+.=   
T Consensus        74 ~~~~~~~A~Y~~g~~----------~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l---  140 (203)
T PF13525_consen   74 NSPKADYALYMLGLS----------YYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL---  140 (203)
T ss_dssp             T-TTHHHHHHHHHHH----------HHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH---
T ss_pred             CCcchhhHHHHHHHH----------HHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH---
Confidence               111222222221          11111110 00111       3357777888888888888877776664431   


Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhccc--Cch----hhHHHHHHHHHhcCChHHHH
Q 036263          196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RTL----VSWNSIIVGFAVNGFVGEAL  248 (305)
Q Consensus       196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~a~  248 (305)
                       ...--.+.+.|.+.|.+..|..-++.+.+  |+.    ...-.++.+|.+.|..+.+.
T Consensus       141 -a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  141 -AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             -HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             -HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence             22223467788999999999998888875  332    45667788888888877543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.51  E-value=1.8  Score=32.85  Aligned_cols=62  Identities=10%  Similarity=0.136  Sum_probs=38.0

Q ss_pred             HHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263          163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN--VRVCNTLMDVYSRFGCIEFARQVFQRMH  224 (305)
Q Consensus       163 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~  224 (305)
                      ..+..+...|.+.|+.+.|.+.+.++.+....+.  ...+-.+|......+++..+.....+..
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~  100 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE  100 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3456666666777777777777777666543333  2344556666666666666666665554

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.42  E-value=0.1  Score=37.97  Aligned_cols=120  Identities=10%  Similarity=0.085  Sum_probs=79.5

Q ss_pred             HHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHH
Q 036263          167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGE  246 (305)
Q Consensus       167 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  246 (305)
                      .++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++....   .-...++..|-+.|.+++
T Consensus        12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~   88 (143)
T PF00637_consen   12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE   88 (143)
T ss_dssp             CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence            35677788899999999999999877667799999999999999888899888884443   333456667777777777


Q ss_pred             HHHHHHHHHHCC--CC--CCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 036263          247 ALEYFNLMQKGV--FK--TDEVSFTGALTACSHAGLIEDGLQYFDIM  289 (305)
Q Consensus       247 a~~~~~~m~~~g--~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m  289 (305)
                      |..++.++....  +.  -...-+...+..+.+.++.+....+.+..
T Consensus        89 a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~  135 (143)
T PF00637_consen   89 AVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYC  135 (143)
T ss_dssp             HHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            777777654321  11  11122333346666666654444444433

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=92.41  E-value=7.3  Score=34.37  Aligned_cols=73  Identities=14%  Similarity=0.142  Sum_probs=48.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhccc--C---chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 036263          200 CNTLMDVYSRFGCIEFARQVFQRMHK--R---TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE-VSFTGALTA  272 (305)
Q Consensus       200 ~~~li~~~~~~g~~~~a~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~  272 (305)
                      =..+..++.+.|+.++|.+.|++|.+  |   +......|+.++...+.+.++..++.+-.+...+.+. .+|+..+-.
T Consensus       262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk  340 (539)
T PF04184_consen  262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK  340 (539)
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence            34566667788888888888888864  2   3346677888888888888888888886543322222 455554433

The molecular function of this protein is uncertain.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=92.33  E-value=0.37  Score=25.43  Aligned_cols=26  Identities=8%  Similarity=-0.133  Sum_probs=22.5

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHH
Q 036263           47 QWTSSISRHCRSGCILEAALEFTRMR   72 (305)
Q Consensus        47 ~~~~li~~~~~~~~~~~a~~~~~~m~   72 (305)
                      +|+.|-..|.+.|++++|+++|++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            57889999999999999999999955

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.22  E-value=5.6  Score=32.63  Aligned_cols=223  Identities=9%  Similarity=0.043  Sum_probs=123.2

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc--------
Q 036263           55 HCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG--------  126 (305)
Q Consensus        55 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--------  126 (305)
                      ..+.|+.+.|...+.+........++.....+-+.|          |+.-...+.+..+++.|...+++..+        
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~----------yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~   72 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVC----------YNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKM   72 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHH----------HHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhc
Confidence            357899999999999987653233333333443332          45555555554377777666655422        


Q ss_pred             -----------cccHHHHHHHHHcCCChH---HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcC
Q 036263          127 -----------CDFWTALLNGFVKRDYFE---EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQD  192 (305)
Q Consensus       127 -----------~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~  192 (305)
                                 ..+...++.++...+..+   +|..+++.+...... ...++..-+..+.+.++.+++.+++.+|+..-
T Consensus        73 ~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~  151 (278)
T PF08631_consen   73 DKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV  151 (278)
T ss_pred             cccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence                       334677888888877655   566666666544222 23445555666666899999999999998863


Q ss_pred             CCCChhHHHHHHHHH---HhcCChHHHHHHHHhcc----cCchh-hHHHH-H-HH--HHhcC------ChHHHHHHHHHH
Q 036263          193 FKDNVRVCNTLMDVY---SRFGCIEFARQVFQRMH----KRTLV-SWNSI-I-VG--FAVNG------FVGEALEYFNLM  254 (305)
Q Consensus       193 ~~~~~~~~~~li~~~---~~~g~~~~a~~~~~~~~----~~~~~-~~~~l-i-~~--~~~~g------~~~~a~~~~~~m  254 (305)
                       ......+..++..+   .... ...|...+..+.    .+... ....+ + ..  ....+      +++...+++...
T Consensus       152 -~~~e~~~~~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v  229 (278)
T PF08631_consen  152 -DHSESNFDSILHHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIV  229 (278)
T ss_pred             -ccccchHHHHHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHH
Confidence             22334445444444   3333 344555554443    22211 11111 1 11  11211      144455555543


Q ss_pred             HHC-CCCCCHHH---HHHHH----HHHhccCcHHHHHHHHHHHH
Q 036263          255 QKG-VFKTDEVS---FTGAL----TACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       255 ~~~-g~~p~~~~---~~~li----~~~~~~g~~~~a~~~~~~m~  290 (305)
                      .+. +-+.+..+   ..+++    ..+.+.+++++|.++|+--.
T Consensus       230 ~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  230 EHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            332 22333333   22333    33557899999999998544

It is also involved in sporulation [].

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=92.11  E-value=0.59  Score=25.95  Aligned_cols=24  Identities=21%  Similarity=0.170  Sum_probs=10.2

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHH
Q 036263          132 ALLNGFVKRDYFEEALEYFRVMQI  155 (305)
Q Consensus       132 ~li~~~~~~g~~~~a~~~~~~m~~  155 (305)
                      .+...|.+.|++++|.++|++..+
T Consensus         6 ~la~~~~~~G~~~~A~~~~~~~l~   29 (44)
T PF13428_consen    6 ALARAYRRLGQPDEAERLLRRALA   29 (44)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Confidence            334444444444444444444433

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=91.93  E-value=0.92  Score=25.14  Aligned_cols=28  Identities=14%  Similarity=0.149  Sum_probs=19.3

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263          230 SWNSIIVGFAVNGFVGEALEYFNLMQKG  257 (305)
Q Consensus       230 ~~~~li~~~~~~g~~~~a~~~~~~m~~~  257 (305)
                      +|..+..+|...|++++|.++|++..+.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4556666777777777777777777664

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=91.77  E-value=7.6  Score=33.21  Aligned_cols=163  Identities=12%  Similarity=0.028  Sum_probs=102.3

Q ss_pred             ccHHHHHHHHHcCCChHHHHHHHHHHHHcCC--CC-CHHHHHHHHHHhcC---cCChhHHHHHHHHHhhcCCCCChhHHH
Q 036263          128 DFWTALLNGFVKRDYFEEALEYFRVMQISGV--EP-DYLTIISVLNVCAN---VRTLGIGLWMHRYVPKQDFKDNVRVCN  201 (305)
Q Consensus       128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p-~~~t~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~  201 (305)
                      .+--.++-+|....+++...++.+.|.....  .+ ....---..-++-+   .|+.++|.+++..+....-.+++.+|.
T Consensus       142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g  221 (374)
T PF13281_consen  142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG  221 (374)
T ss_pred             hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence            3344566679999999999999999976410  11 11111223345556   899999999999966666688899998


Q ss_pred             HHHHHHHh---------cCChHHHHHHHHhcccCchhhHHHH--HHHHHhcC-ChH---HHHHHH---H-HHHHCC---C
Q 036263          202 TLMDVYSR---------FGCIEFARQVFQRMHKRTLVSWNSI--IVGFAVNG-FVG---EALEYF---N-LMQKGV---F  259 (305)
Q Consensus       202 ~li~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~l--i~~~~~~g-~~~---~a~~~~---~-~m~~~g---~  259 (305)
                      .+...|-.         ...+++|...|.+.=+-+...|+-+  ...+...| +.+   +..++-   . ...+.|   -
T Consensus       222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~  301 (374)
T PF13281_consen  222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK  301 (374)
T ss_pred             HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence            88887753         1236778888777654322222211  11112222 222   222222   2 222333   2


Q ss_pred             CCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       260 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      ..|-.-+..++.++.-.|+.+.|.+..+.|.
T Consensus       302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~  332 (374)
T PF13281_consen  302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAF  332 (374)
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            3466777888899999999999999999998

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=91.74  E-value=8.4  Score=33.61  Aligned_cols=140  Identities=14%  Similarity=0.147  Sum_probs=77.9

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCCCHhhHH-HHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc---cccH
Q 036263           55 HCRSGCILEAALEFTRMRLYGTNPSHITFV-TLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG---CDFW  130 (305)
Q Consensus        55 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~  130 (305)
                      +-+.+++++|..+|.+..+. ..-++..+. -++.             +.++++|.- .+++.....+.....   ...|
T Consensus        16 Lqkq~~~~esEkifskI~~e-~~~~~f~lkeEvl~-------------grilnAffl-~nld~Me~~l~~l~~~~~~s~~   80 (549)
T PF07079_consen   16 LQKQKKFQESEKIFSKIYDE-KESSPFLLKEEVLG-------------GRILNAFFL-NNLDLMEKQLMELRQQFGKSAY   80 (549)
T ss_pred             HHHHhhhhHHHHHHHHHHHH-hhcchHHHHHHHHh-------------hHHHHHHHH-hhHHHHHHHHHHHHHhcCCchH
Confidence            34678999999999988765 233333332 1221             344455543 344444443333322   4445


Q ss_pred             HHHHHH--HHcCCChHHHHHHHHHHHHc--CCCCC------------HHHHHHHHHHhcCcCChhHHHHHHHHHhhc---
Q 036263          131 TALLNG--FVKRDYFEEALEYFRVMQIS--GVEPD------------YLTIISVLNVCANVRTLGIGLWMHRYVPKQ---  191 (305)
Q Consensus       131 ~~li~~--~~~~g~~~~a~~~~~~m~~~--g~~p~------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---  191 (305)
                      -.+..+  +-+.+.+++|.+.+..-.++  +.+|.            -.-=+..+.++...|++.+++.+++++...   
T Consensus        81 l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llk  160 (549)
T PF07079_consen   81 LPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLK  160 (549)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhh
Confidence            555544  33556777777777655543  32221            111234556667788888888777776544   


Q ss_pred             -CCCCChhHHHHHHHHHHh
Q 036263          192 -DFKDNVRVCNTLMDVYSR  209 (305)
Q Consensus       192 -~~~~~~~~~~~li~~~~~  209 (305)
                       ....+..+|+.++-.+++
T Consensus       161 rE~~w~~d~yd~~vlmlsr  179 (549)
T PF07079_consen  161 RECEWNSDMYDRAVLMLSR  179 (549)
T ss_pred             hhhcccHHHHHHHHHHHhH
Confidence             334677777776655554

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=91.71  E-value=6.4  Score=32.17  Aligned_cols=133  Identities=9%  Similarity=0.007  Sum_probs=89.5

Q ss_pred             ChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHhcC-cC-ChhHHHHHHHHHhh-cCCCCChhHHHHHHHHHHhcCChHHHH
Q 036263          142 YFEEALEYFRVMQI-SGVEPDYLTIISVLNVCAN-VR-TLGIGLWMHRYVPK-QDFKDNVRVCNTLMDVYSRFGCIEFAR  217 (305)
Q Consensus       142 ~~~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~  217 (305)
                      .+.+|+.+|+.... ..+--|..+...+++.... .+ ....-.++.+.+.. .+-.++..+...++..+++.+++.+-.
T Consensus       143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~  222 (292)
T PF13929_consen  143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF  222 (292)
T ss_pred             HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence            35566666663322 2355567777777776655 22 23333444444443 234778888889999999999999999


Q ss_pred             HHHHhccc-----CchhhHHHHHHHHHhcCChHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHHh
Q 036263          218 QVFQRMHK-----RTLVSWNSIIVGFAVNGFVGEALEYFNL-----MQKGVFKTDEVSFTGALTACS  274 (305)
Q Consensus       218 ~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~-----m~~~g~~p~~~~~~~li~~~~  274 (305)
                      +++.....     .|...|..+|+.-...|+..-...+.++     +++.|+..+...-..+-+.|.
T Consensus       223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~  289 (292)
T PF13929_consen  223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK  289 (292)
T ss_pred             HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence            99887653     4778899999999999999888877766     345566666666555544443

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=91.55  E-value=0.28  Score=25.59  Aligned_cols=24  Identities=29%  Similarity=0.319  Sum_probs=15.3

Q ss_pred             CCChhHHHHHHHHHHhcCChHHHH
Q 036263          194 KDNVRVCNTLMDVYSRFGCIEFAR  217 (305)
Q Consensus       194 ~~~~~~~~~li~~~~~~g~~~~a~  217 (305)
                      |-+...|+.+...|...|++++|+
T Consensus        10 P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   10 PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            445666666666666666666664

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=91.49  E-value=3.2  Score=29.53  Aligned_cols=87  Identities=13%  Similarity=-0.039  Sum_probs=46.2

Q ss_pred             HhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc----Cch---hhHHHHHHHHHhcCC
Q 036263          171 VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK----RTL---VSWNSIIVGFAVNGF  243 (305)
Q Consensus       171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~---~~~~~li~~~~~~g~  243 (305)
                      ++...|+.+.|.+.|.+....- +-....||.=.+++.-.|+.++|.+-+.+..+    .+-   ..|-.-...|...|+
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence            3455666666666666555442 34455666666666666666666665555442    111   122222333455566


Q ss_pred             hHHHHHHHHHHHHCC
Q 036263          244 VGEALEYFNLMQKGV  258 (305)
Q Consensus       244 ~~~a~~~~~~m~~~g  258 (305)
                      -+.|..=|+...+.|
T Consensus       131 dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  131 DDAARADFEAAAQLG  145 (175)
T ss_pred             hHHHHHhHHHHHHhC
Confidence            666666666655555

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.47  E-value=8.7  Score=34.77  Aligned_cols=102  Identities=19%  Similarity=0.077  Sum_probs=64.9

Q ss_pred             HHhcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHH
Q 036263          108 YAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRY  187 (305)
Q Consensus       108 ~~~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~  187 (305)
                      ..+.|+++.|.++..+..+..-|..|..+..+.|++..|.+.|...+.         |..|+-.+...|+.+....+-..
T Consensus       647 al~lgrl~iA~~la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~  717 (794)
T KOG0276|consen  647 ALKLGRLDIAFDLAVEANSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL  717 (794)
T ss_pred             hhhcCcHHHHHHHHHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence            345677777777777776666777777777777777777777765432         45556666666666655555555


Q ss_pred             HhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263          188 VPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH  224 (305)
Q Consensus       188 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  224 (305)
                      ..+.| .     .|...-+|...|+++++.+++.+-.
T Consensus       718 ~~~~g-~-----~N~AF~~~~l~g~~~~C~~lLi~t~  748 (794)
T KOG0276|consen  718 AKKQG-K-----NNLAFLAYFLSGDYEECLELLISTQ  748 (794)
T ss_pred             HHhhc-c-----cchHHHHHHHcCCHHHHHHHHHhcC
Confidence            55554 2     2333345566677777777765543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.33  E-value=2.5  Score=38.02  Aligned_cols=96  Identities=18%  Similarity=0.184  Sum_probs=60.1

Q ss_pred             hcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHh
Q 036263          110 KFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP  189 (305)
Q Consensus       110 ~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~  189 (305)
                      -.|+++.|..++..++ ...-+.++..+.+.|..++|+++-       ..|+. -|    ....+.|+++.|.++..+. 
T Consensus       598 mrrd~~~a~~vLp~I~-k~~rt~va~Fle~~g~~e~AL~~s-------~D~d~-rF----elal~lgrl~iA~~la~e~-  663 (794)
T KOG0276|consen  598 LRRDLEVADGVLPTIP-KEIRTKVAHFLESQGMKEQALELS-------TDPDQ-RF----ELALKLGRLDIAFDLAVEA-  663 (794)
T ss_pred             hhccccccccccccCc-hhhhhhHHhHhhhccchHhhhhcC-------CChhh-hh----hhhhhcCcHHHHHHHHHhh-
Confidence            3478888887777776 445566777777777777765542       12221 11    1224567777776665443 


Q ss_pred             hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263          190 KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH  224 (305)
Q Consensus       190 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  224 (305)
                           -+..-|..|.++..+.|++..|.+.|.+..
T Consensus       664 -----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~  693 (794)
T KOG0276|consen  664 -----NSEVKWRQLGDAALSAGELPLASECFLRAR  693 (794)
T ss_pred             -----cchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence                 234557777777777777777777777665

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.32  E-value=4.9  Score=30.16  Aligned_cols=120  Identities=9%  Similarity=0.063  Sum_probs=55.8

Q ss_pred             HcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChh-HHHHH--HHHHHhcCCh
Q 036263          138 VKRDYFEEALEYFRVMQISGVEPD-YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR-VCNTL--MDVYSRFGCI  213 (305)
Q Consensus       138 ~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l--i~~~~~~g~~  213 (305)
                      .+.++.++|+.-|..+.+.|...- .-.---.-......|+...|...|++.-+..-.|-.. -..-|  .-.+...|.+
T Consensus        69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy  148 (221)
T COG4649          69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY  148 (221)
T ss_pred             HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence            344556666666666655543210 1111112223345566666666666655443223221 11111  1123455666


Q ss_pred             HHHHHHHHhcccC----chhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263          214 EFARQVFQRMHKR----TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG  257 (305)
Q Consensus       214 ~~a~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  257 (305)
                      +......+.+..+    -...-..|--+-.+.|++.+|..+|..+...
T Consensus       149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D  196 (221)
T COG4649         149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND  196 (221)
T ss_pred             HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence            6665555555422    1122234444555666666666666665553

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.22  E-value=0.66  Score=23.84  Aligned_cols=27  Identities=22%  Similarity=0.294  Sum_probs=14.5

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263          230 SWNSIIVGFAVNGFVGEALEYFNLMQK  256 (305)
Q Consensus       230 ~~~~li~~~~~~g~~~~a~~~~~~m~~  256 (305)
                      +|..+...|...|++++|...|++..+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            445555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=90.96  E-value=4.7  Score=29.27  Aligned_cols=94  Identities=10%  Similarity=0.169  Sum_probs=65.3

Q ss_pred             HhhcCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHhccc---------CchhhHHHHHHHHHhcCC-hHHHHHHHHHHH
Q 036263          188 VPKQDFKDNV--RVCNTLMDVYSRFGCIEFARQVFQRMHK---------RTLVSWNSIIVGFAVNGF-VGEALEYFNLMQ  255 (305)
Q Consensus       188 ~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~  255 (305)
                      |.+.+..++.  ...++++......+++.....+++.+..         .+-.+|++++.+.....- --.+..+|+-|+
T Consensus        28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk  107 (145)
T PF13762_consen   28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK  107 (145)
T ss_pred             hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence            3434444443  2346666666666777777777766642         355688999999866655 345677889999


Q ss_pred             HCCCCCCHHHHHHHHHHHhccCcHHH
Q 036263          256 KGVFKTDEVSFTGALTACSHAGLIED  281 (305)
Q Consensus       256 ~~g~~p~~~~~~~li~~~~~~g~~~~  281 (305)
                      +.+.+++..-|..++.++.+....+.
T Consensus       108 ~~~~~~t~~dy~~li~~~l~g~~~~~  133 (145)
T PF13762_consen  108 KNDIEFTPSDYSCLIKAALRGYFHDS  133 (145)
T ss_pred             HcCCCCCHHHHHHHHHHHHcCCCCcc
Confidence            88899999999999999988644433

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=90.53  E-value=8.6  Score=31.56  Aligned_cols=155  Identities=17%  Similarity=0.162  Sum_probs=97.2

Q ss_pred             HHhcCChHHHHHHHHhcCc--------------cccHHHHHHHHHcCCChHHHHHHHHHHHHc--------CCCCC----
Q 036263          108 YAKFGRMDLATVVFDVMRG--------------CDFWTALLNGFVKRDYFEEALEYFRVMQIS--------GVEPD----  161 (305)
Q Consensus       108 ~~~~g~~~~a~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------g~~p~----  161 (305)
                      ..+.|+++.|..++.+...              ...|+.-.+.+.+..+++.|...+++..+.        ...|+    
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            3567899999988888755              222555555555544888887777655332        12333    


Q ss_pred             -HHHHHHHHHHhcCcCChhH---HHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccC---chhhHHHH
Q 036263          162 -YLTIISVLNVCANVRTLGI---GLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR---TLVSWNSI  234 (305)
Q Consensus       162 -~~t~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l  234 (305)
                       ..++..++.++...+..+.   |..+++.+... .+-...++-.-+..+.+.++.+++.+++.+|...   ....+..+
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~  161 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSI  161 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHH
Confidence             4567778888888777654   55566666443 2333556666677777789999999999999742   33445555


Q ss_pred             HHHH---HhcCChHHHHHHHHHHHHCCCCCCHH
Q 036263          235 IVGF---AVNGFVGEALEYFNLMQKGVFKTDEV  264 (305)
Q Consensus       235 i~~~---~~~g~~~~a~~~~~~m~~~g~~p~~~  264 (305)
                      +..+   ... ....|...++.+...-+.|...
T Consensus       162 l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~  193 (278)
T PF08631_consen  162 LHHIKQLAEK-SPELAAFCLDYLLLNRFKSSED  193 (278)
T ss_pred             HHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChh
Confidence            5544   443 3456666666665554555553

It is also involved in sporulation [].

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=90.33  E-value=12  Score=33.05  Aligned_cols=164  Identities=9%  Similarity=0.062  Sum_probs=91.6

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCcccc
Q 036263           50 SSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDF  129 (305)
Q Consensus        50 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  129 (305)
                      .+|.-..+..+++.-++.=.+..+  +.||-.+.-.++.                   --....+.++++++++..+..-
T Consensus       173 ~IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILLA-------------------EEeA~Ti~Eae~l~rqAvkAgE  231 (539)
T PF04184_consen  173 EIMQKAWRERNPQARIKAAKEALE--INPDCADAYILLA-------------------EEEASTIVEAEELLRQAVKAGE  231 (539)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhcc-------------------cccccCHHHHHHHHHHHHHHHH
Confidence            445555566666666666655554  4555433322221                   1234567888888887643110


Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCC-CChhHHHHHHHHHH
Q 036263          130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK-DNVRVCNTLMDVYS  208 (305)
Q Consensus       130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~  208 (305)
                           ..+.+....+..-..++....+...|-..+-..+..++-+.|+.++|.+.+++|.+..-. .+..+...|+.++.
T Consensus       232 -----~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LL  306 (539)
T PF04184_consen  232 -----ASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALL  306 (539)
T ss_pred             -----HhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHH
Confidence                 000000000000011122222223333344445666777889999999999998765322 23457788999999


Q ss_pred             hcCChHHHHHHHHhcccC-----chhhHHHHHHHHH
Q 036263          209 RFGCIEFARQVFQRMHKR-----TLVSWNSIIVGFA  239 (305)
Q Consensus       209 ~~g~~~~a~~~~~~~~~~-----~~~~~~~li~~~~  239 (305)
                      ..+.+.++..++.+-.+-     -...|+..+-.+.
T Consensus       307 elq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR  342 (539)
T PF04184_consen  307 ELQAYADVQALLAKYDDISLPKSATICYTAALLKAR  342 (539)
T ss_pred             hcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence            999999999998887642     3356776654443

The molecular function of this protein is uncertain.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=90.09  E-value=8  Score=32.74  Aligned_cols=162  Identities=14%  Similarity=0.111  Sum_probs=99.6

Q ss_pred             cHHHHHHHHHcCCChHHHHHHHHHHHH-cCCCC---CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcC-----CCCChhH
Q 036263          129 FWTALLNGFVKRDYFEEALEYFRVMQI-SGVEP---DYLTIISVLNVCANVRTLGIGLWMHRYVPKQD-----FKDNVRV  199 (305)
Q Consensus       129 ~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~  199 (305)
                      .|-.+.+++.+..++.+++.+-+.-.. .|..|   ......++-.+....+.++++.+.|+...+--     -.....+
T Consensus        85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv  164 (518)
T KOG1941|consen   85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV  164 (518)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence            355566666665566666555544322 12223   12334556777788888999988888765421     1223567


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhccc-------Cch------hhHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCC-
Q 036263          200 CNTLMDVYSRFGCIEFARQVFQRMHK-------RTL------VSWNSIIVGFAVNGFVGEALEYFNLMQK----GVFKT-  261 (305)
Q Consensus       200 ~~~li~~~~~~g~~~~a~~~~~~~~~-------~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p-  261 (305)
                      |-.|-..|.+..++++|.-+..+..+       .|.      .+.-.|..++...|....|.+.-++..+    .|-+| 
T Consensus       165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~  244 (518)
T KOG1941|consen  165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL  244 (518)
T ss_pred             hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence            88888889998898887766555442       222      1233455677888888888888777543    34222 


Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          262 DEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       262 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      -......+...|-..|+.|.|+.-|+...
T Consensus       245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  245 QARCLLCFADIYRSRGDLERAFRRYEQAM  273 (518)
T ss_pred             HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence            22334455566777888888887777654

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=89.52  E-value=2.8  Score=27.95  Aligned_cols=45  Identities=9%  Similarity=0.036  Sum_probs=31.3

Q ss_pred             HHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263          180 IGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH  224 (305)
Q Consensus       180 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  224 (305)
                      ++.+-++.+...++.|++.+..+.+++|.+.+++.-|.++|+-++
T Consensus        25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK   69 (103)
T cd00923          25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK   69 (103)
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            455556666666677777777777777777777777777777665

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=89.39  E-value=1.1  Score=24.06  Aligned_cols=25  Identities=24%  Similarity=0.337  Sum_probs=13.2

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHH
Q 036263          230 SWNSIIVGFAVNGFVGEALEYFNLM  254 (305)
Q Consensus       230 ~~~~li~~~~~~g~~~~a~~~~~~m  254 (305)
                      +++.+...|...|++++|..++++.
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~a   28 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEA   28 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHH
Confidence            4455555555555555555555554

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=89.38  E-value=1.9  Score=28.99  Aligned_cols=43  Identities=14%  Similarity=0.101  Sum_probs=20.2

Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          248 LEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       248 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      .+-++.+....+.|++....+.+++|-+..++..|..+|+.++
T Consensus        30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK   72 (108)
T PF02284_consen   30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK   72 (108)
T ss_dssp             HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3334444444455555555555555555555555555555554

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]

Probab=89.30  E-value=11  Score=31.06  Aligned_cols=192  Identities=12%  Similarity=0.109  Sum_probs=103.1

Q ss_pred             CchHhHHHHHHHHH--hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhc-CCCCCChhHHHHHHH-HHHhcCC-hHHH
Q 036263           43 DTTVQWTSSISRHC--RSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCA-DFPSNNVMVSTALLD-MYAKFGR-MDLA  117 (305)
Q Consensus        43 ~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~~~~~~~~ll~-~~~~~g~-~~~a  117 (305)
                      |.+..++-+|+-|.  ..+--++..+++.-++  |..++...--.++.+.. ..|.|...+++.|.. .+.+.|= ..-|
T Consensus       109 ~~~qvf~KliRRykyLeK~fE~e~~k~Llflk--~F~e~Er~KLA~~Tal~l~nGt~~~tvl~~L~~d~LVkeGi~l~F~  186 (412)
T KOG2297|consen  109 NSVQVFQKLIRRYKYLEKNFENEMRKFLLFLK--LFEENERKKLAMLTALLLSNGTLPATVLQSLLNDNLVKEGIALSFA  186 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhHHHHhHHHHHH
Confidence            56677787776543  2332333333333332  57788777777777654 345577777766653 3344442 3456


Q ss_pred             HHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------------------------
Q 036263          118 TVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNV--------------------------  171 (305)
Q Consensus       118 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~--------------------------  171 (305)
                      .++|+........+.+++.+.+.+.-+.-+++|        +|+..+.-..-..                          
T Consensus       187 ~~lFk~~~~Ek~i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~Fak~Ft~agL~elvey~~~q~~~~a~kElq  258 (412)
T KOG2297|consen  187 VKLFKEWLVEKDINDLISSLRKGKMDDRLMEFF--------PPNKRSVEHFAKYFTDAGLKELVEYHRNQQSEGARKELQ  258 (412)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhcChHhHHHHhc--------CCcchhHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            777877766666788888887766544444433        3332222222111                          


Q ss_pred             ------hcCcCChhHHHHHH-HHHhhcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhc
Q 036263          172 ------CANVRTLGIGLWMH-RYVPKQDFKDN---VRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVN  241 (305)
Q Consensus       172 ------~~~~~~~~~a~~~~-~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~  241 (305)
                            ..+...++++.... ++|.+.+++-.   ..+|..++++-    .|.+-.++..+-.-+.+..|..|+.+++..
T Consensus       259 ~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsav----eWnKkeelva~qalrhlK~yaPLL~af~s~  334 (412)
T KOG2297|consen  259 KELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAV----EWNKKEELVAEQALRHLKQYAPLLAAFCSQ  334 (412)
T ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHH----hhchHHHHHHHHHHHHHHhhhHHHHHHhcC
Confidence                  12222333333333 33444454322   23466666553    333333322222223455899999999999


Q ss_pred             CChHHHH
Q 036263          242 GFVGEAL  248 (305)
Q Consensus       242 g~~~~a~  248 (305)
                      |+.+-.+
T Consensus       335 g~sEL~L  341 (412)
T KOG2297|consen  335 GQSELEL  341 (412)
T ss_pred             ChHHHHH
Confidence            9987654

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=88.85  E-value=8.1  Score=28.89  Aligned_cols=121  Identities=13%  Similarity=0.096  Sum_probs=80.1

Q ss_pred             cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 036263          127 CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV  206 (305)
Q Consensus       127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  206 (305)
                      ...|..++..+.+.|++..    +.++...++-+|+......+-.+...  ...+.++=-.|.++=    ...+..++..
T Consensus        29 ~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~--~~~~~Ql~lDMLkRL----~~~~~~iiev   98 (167)
T PF07035_consen   29 HELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQ--YPPAYQLGLDMLKRL----GTAYEEIIEV   98 (167)
T ss_pred             HHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHcc--ChHHHHHHHHHHHHh----hhhHHHHHHH
Confidence            4457788888888887554    45566677788877776666544432  233333333333320    1246778889


Q ss_pred             HHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263          207 YSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG  257 (305)
Q Consensus       207 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  257 (305)
                      +...|++-+|.++.+....-+...-..++.+....+|...-..+++-....
T Consensus        99 LL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~  149 (167)
T PF07035_consen   99 LLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEER  149 (167)
T ss_pred             HHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999999999999999876555555567788888888777666666655543

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=88.72  E-value=5.6  Score=26.85  Aligned_cols=45  Identities=7%  Similarity=0.031  Sum_probs=30.2

Q ss_pred             HHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263          180 IGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH  224 (305)
Q Consensus       180 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  224 (305)
                      +..+-++.+...++.|++.+..+.+++|.+.+++.-|.++|+-++
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK   72 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK   72 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            455556666667777778888888888888888888888877776

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=88.72  E-value=1.2  Score=23.86  Aligned_cols=29  Identities=10%  Similarity=-0.119  Sum_probs=25.0

Q ss_pred             hHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036263           45 TVQWTSSISRHCRSGCILEAALEFTRMRL   73 (305)
Q Consensus        45 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~   73 (305)
                      ..+++.+-..|...|++++|..++++..+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            46789999999999999999999998765

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=88.52  E-value=12  Score=30.61  Aligned_cols=140  Identities=10%  Similarity=0.070  Sum_probs=86.8

Q ss_pred             HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHH
Q 036263          136 GFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF  215 (305)
Q Consensus       136 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  215 (305)
                      .....|++.+|..+|+...... .-+...-..+..++...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~  221 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE  221 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence            4556788888888888776642 123556667788888889998888888887544322223332333455555555555


Q ss_pred             HHHHHHhcc-cC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccC
Q 036263          216 ARQVFQRMH-KR-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG--VFKTDEVSFTGALTACSHAG  277 (305)
Q Consensus       216 a~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g  277 (305)
                      ...+-++.. .| |...--.+...+...|+.+.|.+.+-.+.+.  |.. |...=..++..|.--|
T Consensus       222 ~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g  286 (304)
T COG3118         222 IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG  286 (304)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence            555544444 34 5556666777888889999888876665544  332 3344445555555445

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=88.44  E-value=1.5  Score=22.31  Aligned_cols=25  Identities=24%  Similarity=0.254  Sum_probs=11.2

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHH
Q 036263          232 NSIIVGFAVNGFVGEALEYFNLMQK  256 (305)
Q Consensus       232 ~~li~~~~~~g~~~~a~~~~~~m~~  256 (305)
                      ..+...+...|++++|.+.|++..+
T Consensus         5 ~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    5 YYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            3344444444555555554444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=88.34  E-value=8  Score=28.20  Aligned_cols=61  Identities=18%  Similarity=0.166  Sum_probs=42.5

Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCCH---hhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCccc---c
Q 036263           56 CRSGCILEAALEFTRMRLYGTNPSH---ITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCD---F  129 (305)
Q Consensus        56 ~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~  129 (305)
                      ...++++++..+++.|+-  +.|+.   .+|...+                    +...|+|++|.++|+.+.+..   .
T Consensus        21 L~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l--------------------~i~rg~w~eA~rvlr~l~~~~~~~p   78 (153)
T TIGR02561        21 LRSADPYDAQAMLDALRV--LRPNLKELDMFDGWL--------------------LIARGNYDEAARILRELLSSAGAPP   78 (153)
T ss_pred             HhcCCHHHHHHHHHHHHH--hCCCccccchhHHHH--------------------HHHcCCHHHHHHHHHhhhccCCCch
Confidence            348899999999999986  55653   3333333                    567899999999999998733   3


Q ss_pred             HHHHHHHHH
Q 036263          130 WTALLNGFV  138 (305)
Q Consensus       130 ~~~li~~~~  138 (305)
                      |..-+.++|
T Consensus        79 ~~kAL~A~C   87 (153)
T TIGR02561        79 YGKALLALC   87 (153)
T ss_pred             HHHHHHHHH
Confidence            444444443

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=88.31  E-value=1.4  Score=22.59  Aligned_cols=28  Identities=14%  Similarity=-0.064  Sum_probs=24.4

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036263           46 VQWTSSISRHCRSGCILEAALEFTRMRL   73 (305)
Q Consensus        46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~   73 (305)
                      .+|..+-..+...|++++|+..|++..+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            4688889999999999999999999887

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.67  E-value=3.5  Score=33.99  Aligned_cols=91  Identities=14%  Similarity=0.031  Sum_probs=66.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhcCc--------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 036263          101 STALLDMYAKFGRMDLATVVFDVMRG--------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVC  172 (305)
Q Consensus       101 ~~~ll~~~~~~g~~~~a~~~~~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~  172 (305)
                      ...++..-....+++.++..+=.++.        ..+-.++++.+-+ -+.++++.++..=...|+-||-.++..+|+.+
T Consensus        67 Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~f  145 (418)
T KOG4570|consen   67 VDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSF  145 (418)
T ss_pred             hhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHHHHHHH
Confidence            34444445556778888877766654        2223334444433 45778888888888899999999999999999


Q ss_pred             cCcCChhHHHHHHHHHhhcC
Q 036263          173 ANVRTLGIGLWMHRYVPKQD  192 (305)
Q Consensus       173 ~~~~~~~~a~~~~~~~~~~~  192 (305)
                      .+.++..+|.++.-.|....
T Consensus       146 lk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  146 LKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             HhcccHHHHHHHHHHHHHHH
Confidence            99999999988888776654

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=87.18  E-value=10  Score=28.08  Aligned_cols=116  Identities=7%  Similarity=-0.103  Sum_probs=64.6

Q ss_pred             HHHHHHHH---HhcCcCChhHHHHHHHHHhhcCCCCChh-HHHHHHHHHHhcCChHHHHHHHHhcccCch-hhHH-HHHH
Q 036263          163 LTIISVLN---VCANVRTLGIGLWMHRYVPKQDFKDNVR-VCNTLMDVYSRFGCIEFARQVFQRMHKRTL-VSWN-SIIV  236 (305)
Q Consensus       163 ~t~~~ll~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~-~li~  236 (305)
                      .+.+.|+.   .-...++.+++..+++.+.-..  |... .-..-...+...|++.+|.++|+++..... ..|. .|+.
T Consensus         8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA   85 (160)
T PF09613_consen    8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLA   85 (160)
T ss_pred             HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence            34444444   4467789999999999887753  4332 223334556789999999999999985332 2333 3433


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 036263          237 GFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGL  283 (305)
Q Consensus       237 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~  283 (305)
                      .|....+-..=..+-+++.+.+-.|+..   .+++.+....+...|.
T Consensus        86 ~CL~~~~D~~Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a~  129 (160)
T PF09613_consen   86 LCLYALGDPSWRRYADEVLESGADPDAR---ALVRALLARADLEPAH  129 (160)
T ss_pred             HHHHHcCChHHHHHHHHHHhcCCChHHH---HHHHHHHHhccccchh
Confidence            3333332222223344456655333333   3455555544444443

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=87.16  E-value=15  Score=30.07  Aligned_cols=147  Identities=14%  Similarity=0.081  Sum_probs=99.2

Q ss_pred             CCCCCCHhhHHHHHHhhcCCCCCChh-HHHHHHHHHHhcCChHHHHHHHHhc-------CccccHHHHHHHHHc-CC-Ch
Q 036263           74 YGTNPSHITFVTLLSGCADFPSNNVM-VSTALLDMYAKFGRMDLATVVFDVM-------RGCDFWTALLNGFVK-RD-YF  143 (305)
Q Consensus        74 ~g~~p~~~~~~~ll~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~-------~~~~~~~~li~~~~~-~g-~~  143 (305)
                      .|.++...-+..++..+...-.++.. -|..|+   .+...+.+|+++|+..       .+..+-..+++.... .+ ..
T Consensus       106 ~g~~Lt~~Dli~FL~~~i~~~~~~k~~~Y~~LV---k~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l  182 (292)
T PF13929_consen  106 MGCELTKEDLISFLKLVIINLSSNKSFNYWDLV---KRNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKL  182 (292)
T ss_pred             cCCCCcHHHHHHHHHHHHhccccccchHHHHHH---HhhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccch
Confidence            47777777776666665443332221 133332   2334567888888832       124445566666655 22 22


Q ss_pred             HHHHHHHHHHH-HcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhc-CCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 036263          144 EEALEYFRVMQ-ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ-DFKDNVRVCNTLMDVYSRFGCIEFARQVFQ  221 (305)
Q Consensus       144 ~~a~~~~~~m~-~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  221 (305)
                      ..-.++.+-+. ..|-.++..+...++..+++.+++....++++..... +..-|...|..+|+.-.+.|+..-..++..
T Consensus       183 ~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~  262 (292)
T PF13929_consen  183 NALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID  262 (292)
T ss_pred             hhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence            22333444433 3356788999999999999999999999999988766 566788999999999999999988888877


Q ss_pred             hc
Q 036263          222 RM  223 (305)
Q Consensus       222 ~~  223 (305)
                      +=
T Consensus       263 ~G  264 (292)
T PF13929_consen  263 DG  264 (292)
T ss_pred             CC
Confidence            64

>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit

Probab=86.75  E-value=7.1  Score=34.10  Aligned_cols=167  Identities=14%  Similarity=0.136  Sum_probs=84.5

Q ss_pred             ChHHHHHHHHhcCccccHHHHHHHHHcCC-----------ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHH
Q 036263          113 RMDLATVVFDVMRGCDFWTALLNGFVKRD-----------YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG  181 (305)
Q Consensus       113 ~~~~a~~~~~~~~~~~~~~~li~~~~~~g-----------~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a  181 (305)
                      ++++|....+.+++...+...+...-+.|           .+++-.++++.+.+.| .+|  ....-|++|.+.+++++|
T Consensus        29 d~~eav~y~k~~p~~k~f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A  105 (480)
T TIGR01503        29 DLQDAVDYHKSIPAHKNFAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEA  105 (480)
T ss_pred             CHHHHHHHHHhCCccccHHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHH
Confidence            67788888888777555555544433322           3555666666665554 222  233445666666666666


Q ss_pred             HHHHHHHhhcCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 036263          182 LWMHRYVPKQDFKDNVRVCNTLMDVYSR-FGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK  260 (305)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  260 (305)
                      ...+++-.+.|..        ++++|=- ..-++.+.++.+....|=          -.++|. ..+..+++-+...|+.
T Consensus       106 ~~~l~~s~~~~~s--------~LNGfP~VnhGv~~~R~l~~~v~~Pv----------QvRHGt-pDarlL~e~~~a~G~~  166 (480)
T TIGR01503       106 AVGIKESIKAGRS--------LLNGFPGVNHGVKGCRKVLEAVNLPL----------QIRHGT-PDARLLAEIILAGGFT  166 (480)
T ss_pred             HHHHHhhhhcCcc--------cccCCCcccccHHHHHHHHHhCCCCe----------eccCCC-CcHHHHHHHHHHcCCC
Confidence            6666655543310        0111100 011344444444443221          123342 3456666666666643


Q ss_pred             CC---HHHHHHHHHHHhccCcHHHHHHHHH-------HHHHHhCCCCCccccccC
Q 036263          261 TD---EVSFTGALTACSHAGLIEDGLQYFD-------IMKKIYRVSPQIEHHGCI  305 (305)
Q Consensus       261 p~---~~~~~~li~~~~~~g~~~~a~~~~~-------~m~~~~~~~p~~~~y~~l  305 (305)
                      -.   ..+|+.   -|++.=-+++++..|+       ... +.|+..+.++|++|
T Consensus       167 a~EGG~ISYnl---PYsK~vpLe~si~~WqyvdRL~g~y~-e~gv~InrE~FGpL  217 (480)
T TIGR01503       167 SFEGGGISYNI---PYAKNVTLEKSLEDWQYCDRLVGFYE-EQGVHINREPFGPL  217 (480)
T ss_pred             ccCCCcceecc---ccCCCCCHHHHHHHHHHHHHHHHHHH-hcCceeccccccCC
Confidence            32   234432   2343333444444443       333 56999999999875

This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=86.74  E-value=12  Score=28.47  Aligned_cols=188  Identities=16%  Similarity=0.083  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhcCc-------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-H
Q 036263          100 VSTALLDMYAKFGRMDLATVVFDVMRG-------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLN-V  171 (305)
Q Consensus       100 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~-~  171 (305)
                      .+......+...+.+..+...+.....       ...+......+...+.+..+...+.........+ ......... .
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  139 (291)
T COG0457          61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA  139 (291)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence            344555567777888888877766542       3345566667777788888999888877644333 122222222 7


Q ss_pred             hcCcCChhHHHHHHHHHhhcCC--CCChhHHHHHHHHHHhcCChHHHHHHHHhcccC----chhhHHHHHHHHHhcCChH
Q 036263          172 CANVRTLGIGLWMHRYVPKQDF--KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR----TLVSWNSIIVGFAVNGFVG  245 (305)
Q Consensus       172 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~g~~~  245 (305)
                      +...|+++.+...+........  ......+......+...++.+.+...+.+..+.    ....+..+...+...++++
T Consensus       140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (291)
T COG0457         140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE  219 (291)
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence            8899999999999999855321  123444555555577888999999999888742    2566888888888999999


Q ss_pred             HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          246 EALEYFNLMQKGVFKTD-EVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       246 ~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      .|...+......  .|+ ...+..+...+...+..+.+...+....
T Consensus       220 ~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (291)
T COG0457         220 EALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKAL  263 (291)
T ss_pred             HHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999998874  343 3444444444446677888888877766

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=86.66  E-value=10  Score=27.50  Aligned_cols=46  Identities=15%  Similarity=0.177  Sum_probs=25.3

Q ss_pred             hcCChHHHHHHHHhcCc--------cccHHHHHHHHHcCCChHHHHHHHHHHHH
Q 036263          110 KFGRMDLATVVFDVMRG--------CDFWTALLNGFVKRDYFEEALEYFRVMQI  155 (305)
Q Consensus       110 ~~g~~~~a~~~~~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~  155 (305)
                      +.|++++|.+.|+.+..        ...--.++.++.+.|++++|...+++..+
T Consensus        22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir   75 (142)
T PF13512_consen   22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR   75 (142)
T ss_pred             HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            44666666666665544        22234455566666666666666655554

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=86.56  E-value=1.6  Score=22.16  Aligned_cols=27  Identities=19%  Similarity=0.225  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          264 VSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       264 ~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      ..+..+-..+...|++++|++.|++..
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al   28 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKAL   28 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            456677888999999999999999887

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK11906 transcriptional regulator; Provisional

Probab=86.16  E-value=23  Score=31.16  Aligned_cols=34  Identities=12%  Similarity=0.083  Sum_probs=21.5

Q ss_pred             HhH--HHHHHHHHhcC-----ChhHHHHHHHHHHhC-CCCCC
Q 036263           46 VQW--TSSISRHCRSG-----CILEAALEFTRMRLY-GTNPS   79 (305)
Q Consensus        46 ~~~--~~li~~~~~~~-----~~~~a~~~~~~m~~~-g~~p~   79 (305)
                      ..|  ...+.+.....     ..+.|+.+|.+.... .+.|+
T Consensus       252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~  293 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTL  293 (458)
T ss_pred             cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcc
Confidence            566  66777766522     345678888888732 35665

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=85.80  E-value=22  Score=30.59  Aligned_cols=78  Identities=14%  Similarity=0.002  Sum_probs=55.3

Q ss_pred             cCChHHHHHHHHhcCc-ccc----HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCChhHHHHH
Q 036263          111 FGRMDLATVVFDVMRG-CDF----WTALLNGFVKRDYFEEALEYFRVMQISGVEPD-YLTIISVLNVCANVRTLGIGLWM  184 (305)
Q Consensus       111 ~g~~~~a~~~~~~~~~-~~~----~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~  184 (305)
                      .|+.+.|.+-|+.|.+ ..+    ...|.-..-+.|..+.|.++-+.--+  ..|. .......+...+..|+++.|.++
T Consensus       133 eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~--~Ap~l~WA~~AtLe~r~~~gdWd~AlkL  210 (531)
T COG3898         133 EGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAE--KAPQLPWAARATLEARCAAGDWDGALKL  210 (531)
T ss_pred             cCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHh--hccCCchHHHHHHHHHHhcCChHHHHHH
Confidence            4888899999988865 121    33444445667888888777766543  3443 56778888889999999999988


Q ss_pred             HHHHhh
Q 036263          185 HRYVPK  190 (305)
Q Consensus       185 ~~~~~~  190 (305)
                      .+.-..
T Consensus       211 vd~~~~  216 (531)
T COG3898         211 VDAQRA  216 (531)
T ss_pred             HHHHHH
Confidence            876544

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=85.40  E-value=21  Score=30.09  Aligned_cols=65  Identities=14%  Similarity=-0.010  Sum_probs=41.4

Q ss_pred             CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          226 RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT---DEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       226 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      ....+|..+.+.+.+.|+++.|...+.++...+..+   ++...-.-.+..-..|+.++|...++...
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~  211 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELL  211 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            445677777788888888888888777776643111   22333333455555677777777777766

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.25  E-value=17  Score=28.86  Aligned_cols=23  Identities=9%  Similarity=0.151  Sum_probs=16.5

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCC
Q 036263          238 FAVNGFVGEALEYFNLMQKGVFK  260 (305)
Q Consensus       238 ~~~~g~~~~a~~~~~~m~~~g~~  260 (305)
                      -+..+++.+|+.+|++.....+.
T Consensus       164 aa~leqY~~Ai~iyeqva~~s~~  186 (288)
T KOG1586|consen  164 AAQLEQYSKAIDIYEQVARSSLD  186 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc
Confidence            34567888888888887775443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=84.86  E-value=12  Score=26.75  Aligned_cols=88  Identities=14%  Similarity=0.029  Sum_probs=52.1

Q ss_pred             HHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHH---HHHHHhc
Q 036263          135 NGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL---MDVYSRF  210 (305)
Q Consensus       135 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~  210 (305)
                      -++...|+++.|++.|.+...-  -| ....||.-..++.-.|+.++|..=+++..+..-.-+.....+.   ...|...
T Consensus        51 valaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~  128 (175)
T KOG4555|consen   51 IALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL  128 (175)
T ss_pred             HHHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence            3566677777777777766552  33 5667777777777777777777766666553212222222222   2345556


Q ss_pred             CChHHHHHHHHhcc
Q 036263          211 GCIEFARQVFQRMH  224 (305)
Q Consensus       211 g~~~~a~~~~~~~~  224 (305)
                      |+-+.|..-|+...
T Consensus       129 g~dd~AR~DFe~AA  142 (175)
T KOG4555|consen  129 GNDDAARADFEAAA  142 (175)
T ss_pred             CchHHHHHhHHHHH
Confidence            66677766665544

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=84.73  E-value=2.1  Score=21.80  Aligned_cols=25  Identities=28%  Similarity=0.287  Sum_probs=11.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHH
Q 036263          231 WNSIIVGFAVNGFVGEALEYFNLMQ  255 (305)
Q Consensus       231 ~~~li~~~~~~g~~~~a~~~~~~m~  255 (305)
                      |..+...|...|++++|.+.|++..
T Consensus         4 ~~~lg~~y~~~~~~~~A~~~~~~a~   28 (34)
T PF13181_consen    4 YYNLGKIYEQLGDYEEALEYFEKAL   28 (34)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3344444444455555555444443

...

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=84.71  E-value=21  Score=29.38  Aligned_cols=117  Identities=10%  Similarity=0.011  Sum_probs=81.8

Q ss_pred             HHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccC-chhhH---HHHHHHHHhcCChH
Q 036263          170 NVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR-TLVSW---NSIIVGFAVNGFVG  245 (305)
Q Consensus       170 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~---~~li~~~~~~g~~~  245 (305)
                      ......|++.+|...|+...... +-+...--.+..+|...|+.+.|..++..++.. ...-+   ..-|..+.+.....
T Consensus       142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~  220 (304)
T COG3118         142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP  220 (304)
T ss_pred             hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence            34578899999999999888764 444667778899999999999999999999842 11222   22344455555555


Q ss_pred             HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          246 EALEYFNLMQKGVFKT-DEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       246 ~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      +...+-.+...   .| |...--.+...+...|+.+.|.+.+=.+.
T Consensus       221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l  263 (304)
T COG3118         221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALL  263 (304)
T ss_pred             CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            55555555544   25 55555567777888899888887665554

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=84.70  E-value=2.2  Score=20.46  Aligned_cols=18  Identities=17%  Similarity=0.104  Sum_probs=8.4

Q ss_pred             HHHHHHhcCChHHHHHHH
Q 036263          203 LMDVYSRFGCIEFARQVF  220 (305)
Q Consensus       203 li~~~~~~g~~~~a~~~~  220 (305)
                      +..++...|++++|..++
T Consensus         7 la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    7 LARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHcCCHHHHHHHH
Confidence            344444444444444444

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=84.67  E-value=31  Score=31.29  Aligned_cols=178  Identities=10%  Similarity=0.019  Sum_probs=119.5

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCC--CCCHHHHHHH
Q 036263           96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGV--EPDYLTIISV  168 (305)
Q Consensus        96 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~t~~~l  168 (305)
                      ++..+|...++.-.+.|+.+.+.-+|++..-     ...|-..+.-....|+.+.|..++..-.+--+  .|....+.+.
T Consensus       295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~  374 (577)
T KOG1258|consen  295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR  374 (577)
T ss_pred             HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence            4566888889999999999999999998854     34455566666666999988888766544322  2223333333


Q ss_pred             HHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHH---HHHHhccc--CchhhHHHHHHH-----H
Q 036263          169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFAR---QVFQRMHK--RTLVSWNSIIVG-----F  238 (305)
Q Consensus       169 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~---~~~~~~~~--~~~~~~~~li~~-----~  238 (305)
                      +.  -..|+++.|..+++.+...- +--...-..-+....+.|+.+.+.   +++....+  .+..+.+.+.--     +
T Consensus       375 f~--e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~  451 (577)
T KOG1258|consen  375 FE--ESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY  451 (577)
T ss_pred             HH--HhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence            32  35679999999999998774 323444444566677888888888   44444432  233333333333     3


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036263          239 AVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAG  277 (305)
Q Consensus       239 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g  277 (305)
                      .-.++.+.|..++.++... ++++...|..+++-+...+
T Consensus       452 ~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  452 KIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             HHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence            4468899999999999886 5667777888877665544

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=84.66  E-value=29  Score=31.02  Aligned_cols=156  Identities=12%  Similarity=0.069  Sum_probs=82.9

Q ss_pred             ccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHH
Q 036263          128 DFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY  207 (305)
Q Consensus       128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  207 (305)
                      ...-+++..++.+.++.-+..+-.+|...|  -+-..|..++..|... .-+.-..+|+++.+..+ .|+..-..|..-|
T Consensus        67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~y  142 (711)
T COG1747          67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKY  142 (711)
T ss_pred             hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHH
Confidence            335566666666666666667777776643  3455666677766666 45556666666666542 2333334444444


Q ss_pred             HhcCChHHHHHHHHhcccC------ch---hhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccC
Q 036263          208 SRFGCIEFARQVFQRMHKR------TL---VSWNSIIVGFAVNGFVGEALEYFNLMQKG-VFKTDEVSFTGALTACSHAG  277 (305)
Q Consensus       208 ~~~g~~~~a~~~~~~~~~~------~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g  277 (305)
                      -+ ++.+.+..+|.++..+      +.   ..|.-++.-  -..+.+....+..+.... |...-...+.-+-.-|....
T Consensus       143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e  219 (711)
T COG1747         143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE  219 (711)
T ss_pred             HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence            44 6666666666665421      10   133333321  133455555555554432 33333344444555566666


Q ss_pred             cHHHHHHHHHHHH
Q 036263          278 LIEDGLQYFDIMK  290 (305)
Q Consensus       278 ~~~~a~~~~~~m~  290 (305)
                      ++++|++++..+.
T Consensus       220 N~~eai~Ilk~il  232 (711)
T COG1747         220 NWTEAIRILKHIL  232 (711)
T ss_pred             CHHHHHHHHHHHh
Confidence            6666666666443

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=84.55  E-value=27  Score=32.40  Aligned_cols=218  Identities=14%  Similarity=0.050  Sum_probs=95.1

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc---cc
Q 036263           52 ISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG---CD  128 (305)
Q Consensus        52 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~  128 (305)
                      ...+.-.|+++.|++.+-.  ..+...|...+...+..+.-.+.|+...                 ..++..-+.   ..
T Consensus       265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~-----------------~~lls~~~~~~~~l  325 (613)
T PF04097_consen  265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS-----------------APLLSVDPGDPPPL  325 (613)
T ss_dssp             HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT----------------------------------------
T ss_pred             HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc-----------------cceeeecCCCCCCc
Confidence            4566778999999998876  3345667777777776654332211111                 001100000   12


Q ss_pred             cHHHHHHHHHcC---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hcCcCC--------------hhHHHHHHHHHhh
Q 036263          129 FWTALLNGFVKR---DYFEEALEYFRVMQISGVEPDYLTIISVLNV-CANVRT--------------LGIGLWMHRYVPK  190 (305)
Q Consensus       129 ~~~~li~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~~--------------~~~a~~~~~~~~~  190 (305)
                      -+..||..|.+.   .+..+|.++|--+....-+.....+...+.- ....++              ...+.+-...+..
T Consensus       326 n~arLI~~Y~~~F~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~  405 (613)
T PF04097_consen  326 NFARLIGQYTRSFEITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIK  405 (613)
T ss_dssp             -HHHHHHHHHHTTTTT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT
T ss_pred             CHHHHHHHHHHHHhccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccC
Confidence            245555555553   3455666666554432211111222211111 111111              1111111111222


Q ss_pred             cCCCCChhHH---HHHHHHHHhcCChHHHHHHHHhcccCch--hhHHHHHHHHHhcCC------------hHHHHHHHHH
Q 036263          191 QDFKDNVRVC---NTLMDVYSRFGCIEFARQVFQRMHKRTL--VSWNSIIVGFAVNGF------------VGEALEYFNL  253 (305)
Q Consensus       191 ~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~li~~~~~~g~------------~~~a~~~~~~  253 (305)
                      .. .+.....   .....-+...|++++|..+|+-..+.+.  ...|.++........            ...|..+.+.
T Consensus       406 ~~-~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~  484 (613)
T PF04097_consen  406 FD-DDEDFLREIIEQAAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILER  484 (613)
T ss_dssp             -S-SSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHH
T ss_pred             CC-CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHH
Confidence            11 1222222   2333445678999999999998886433  445555544433322            2344445444


Q ss_pred             HHHCC-----CCC-CHHHHHHHHHH-----HhccCcHHHHHHHHHHH
Q 036263          254 MQKGV-----FKT-DEVSFTGALTA-----CSHAGLIEDGLQYFDIM  289 (305)
Q Consensus       254 m~~~g-----~~p-~~~~~~~li~~-----~~~~g~~~~a~~~~~~m  289 (305)
                      ....+     +.+ +..|+..|++.     +...|+++.|++.++.+
T Consensus       485 y~~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L  531 (613)
T PF04097_consen  485 YKSNPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKL  531 (613)
T ss_dssp             HTTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred             HHhCcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence            43322     212 34566666543     44689999998777744

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised

Probab=84.54  E-value=4.6  Score=22.97  Aligned_cols=39  Identities=21%  Similarity=0.125  Sum_probs=32.5

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHh
Q 036263           51 SISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSG   89 (305)
Q Consensus        51 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~   89 (305)
                      ++....+.|-++++..++++|.+.|+.-+...|..+++.
T Consensus         8 iL~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~   46 (48)
T PF11848_consen    8 ILLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR   46 (48)
T ss_pred             HHHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence            344556789999999999999999999999988877764

This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=84.36  E-value=14  Score=27.29  Aligned_cols=73  Identities=8%  Similarity=0.095  Sum_probs=47.4

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 036263          132 ALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISV-LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS  208 (305)
Q Consensus       132 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  208 (305)
                      .+++.-.+.++.+++..++..+.-  +.|.......+ ...+...|++.+|..+++.+.+..  |.......|+..|.
T Consensus        15 e~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL   88 (160)
T PF09613_consen   15 EVLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCL   88 (160)
T ss_pred             HHHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHH
Confidence            344556677899999999998876  45654333222 223578899999999999987764  44333444444443

>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=84.31  E-value=6.1  Score=27.14  Aligned_cols=31  Identities=13%  Similarity=0.256  Sum_probs=25.5

Q ss_pred             CccccHHHHHHHHHcCCChHHHHHHHHHHHH
Q 036263          125 RGCDFWTALLNGFVKRDYFEEALEYFRVMQI  155 (305)
Q Consensus       125 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  155 (305)
                      .+..-|..|+..|...|.+++|++++.++..
T Consensus        37 ~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~   67 (108)
T PF10366_consen   37 KEHGKYQELVDLYQGKGLHRKALELLKKLAD   67 (108)
T ss_pred             HHcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence            3355688999999999999999999988766

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.

>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised

Probab=84.24  E-value=5.4  Score=22.69  Aligned_cols=37  Identities=14%  Similarity=0.184  Sum_probs=30.0

Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036263          236 VGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA  272 (305)
Q Consensus       236 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  272 (305)
                      ....+.|-.+++..++++|.+.|+..+...+..+++-
T Consensus        10 ~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~   46 (48)
T PF11848_consen   10 LLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR   46 (48)
T ss_pred             HHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence            3446778888999999999999998888888877653

This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=84.22  E-value=36  Score=31.75  Aligned_cols=52  Identities=13%  Similarity=0.073  Sum_probs=29.7

Q ss_pred             hhHHHHH--HHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCcHH
Q 036263          229 VSWNSII--VGFAVNGFVGEALEYFNLMQKG-VFKTDEVSFTGALTACSHAGLIE  280 (305)
Q Consensus       229 ~~~~~li--~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~  280 (305)
                      ..|+-+|  .--...|.++.|.+.--.+... .+-|....|+.+.-+-+....+-
T Consensus      1020 EAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFG 1074 (1189)
T KOG2041|consen 1020 EAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFG 1074 (1189)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhh
Confidence            3444444  4456678888887765544442 36677777776665544444433

>PRK11906 transcriptional regulator; Provisional

Probab=83.76  E-value=30  Score=30.48  Aligned_cols=158  Identities=9%  Similarity=0.050  Sum_probs=100.6

Q ss_pred             ccH--HHHHHHHHcCC-----ChHHHHHHHHHHH-HcCCCCC-HHHHHHHHHHh--------cC-cCChhHHHHHHHHHh
Q 036263          128 DFW--TALLNGFVKRD-----YFEEALEYFRVMQ-ISGVEPD-YLTIISVLNVC--------AN-VRTLGIGLWMHRYVP  189 (305)
Q Consensus       128 ~~~--~~li~~~~~~g-----~~~~a~~~~~~m~-~~g~~p~-~~t~~~ll~~~--------~~-~~~~~~a~~~~~~~~  189 (305)
                      ..|  ..++.+.....     ..+.|+.+|.+.. ...+.|+ ...|..+-.++        .. .....+|.+.-+...
T Consensus       252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv  331 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS  331 (458)
T ss_pred             cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            456  66666665532     3567888888876 2235665 33333322221        12 234456677777777


Q ss_pred             hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc--cCc-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHH
Q 036263          190 KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH--KRT-LVSWNSIIVGFAVNGFVGEALEYFNLMQKGV-FKTDEVS  265 (305)
Q Consensus       190 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~  265 (305)
                      +.+ +.|......+..+..-.++++.|...|++..  .|| ..+|......+.-+|+.++|.+.+++..+.. .+.-...
T Consensus       332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~  410 (458)
T PRK11906        332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVV  410 (458)
T ss_pred             hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHH
Confidence            777 7788888888888888888999999999987  353 3556666666777899999999999966632 2222233


Q ss_pred             HHHHHHHHhccCcHHHHHHHHH
Q 036263          266 FTGALTACSHAGLIEDGLQYFD  287 (305)
Q Consensus       266 ~~~li~~~~~~g~~~~a~~~~~  287 (305)
                      ....+..|+.. ..+.++.++-
T Consensus       411 ~~~~~~~~~~~-~~~~~~~~~~  431 (458)
T PRK11906        411 IKECVDMYVPN-PLKNNIKLYY  431 (458)
T ss_pred             HHHHHHHHcCC-chhhhHHHHh
Confidence            44444466554 4556665543

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=83.52  E-value=29  Score=30.09  Aligned_cols=148  Identities=15%  Similarity=-0.008  Sum_probs=91.4

Q ss_pred             HHhcCChHHHHHHHHhcCc---cccHHHHHHH--HHcCCChHHHHHHHHHHHHcCCCCCHHHHHH---H----------H
Q 036263          108 YAKFGRMDLATVVFDVMRG---CDFWTALLNG--FVKRDYFEEALEYFRVMQISGVEPDYLTIIS---V----------L  169 (305)
Q Consensus       108 ~~~~g~~~~a~~~~~~~~~---~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~---l----------l  169 (305)
                      +.-.|+.++|.++--....   ...+..++++  +-..++.+.+...|++-..  ..|+...-..   .          -
T Consensus       179 l~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~~g  256 (486)
T KOG0550|consen  179 LAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKERG  256 (486)
T ss_pred             hhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHhhh
Confidence            3445777777766555433   3334444443  3345667777777776554  3454332221   1          2


Q ss_pred             HHhcCcCChhHHHHHHHHHhhc---CCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchh---hHHHHHHHHHhcCC
Q 036263          170 NVCANVRTLGIGLWMHRYVPKQ---DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLV---SWNSIIVGFAVNGF  243 (305)
Q Consensus       170 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g~  243 (305)
                      +-..+.|.+..|.+.+.+.+..   ...+++..|.....+..+.|+.++|..--++..+-|..   .|..-..++...++
T Consensus       257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~  336 (486)
T KOG0550|consen  257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK  336 (486)
T ss_pred             hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence            2246788888888888887764   34566777877778888889988888887777765543   22222334556677


Q ss_pred             hHHHHHHHHHHHHC
Q 036263          244 VGEALEYFNLMQKG  257 (305)
Q Consensus       244 ~~~a~~~~~~m~~~  257 (305)
                      |++|.+-|+...+.
T Consensus       337 ~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  337 WEEAVEDYEKAMQL  350 (486)
T ss_pred             HHHHHHHHHHHHhh
Confidence            88888877775543

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=83.32  E-value=18  Score=29.53  Aligned_cols=26  Identities=8%  Similarity=-0.203  Sum_probs=14.8

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHh
Q 036263           48 WTSSISRHCRSGCILEAALEFTRMRL   73 (305)
Q Consensus        48 ~~~li~~~~~~~~~~~a~~~~~~m~~   73 (305)
                      ...-.+-+.-..++..|++..++-.+
T Consensus        38 Le~Aad~LvV~rdF~aal~tCerglq   63 (309)
T PF07163_consen   38 LEEAADLLVVHRDFQAALETCERGLQ   63 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444456677777777666544

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=83.28  E-value=23  Score=28.80  Aligned_cols=174  Identities=10%  Similarity=0.038  Sum_probs=113.8

Q ss_pred             cCChHHHHHHHHhcCc----cc-----cHHHHHHHHHcCCChHHHHHHHHHHHHc---CC--CCCHHHHHHHHHHhcCcC
Q 036263          111 FGRMDLATVVFDVMRG----CD-----FWTALLNGFVKRDYFEEALEYFRVMQIS---GV--EPDYLTIISVLNVCANVR  176 (305)
Q Consensus       111 ~g~~~~a~~~~~~~~~----~~-----~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~--~p~~~t~~~ll~~~~~~~  176 (305)
                      ....++|+.-|+.+.+    .+     ..-.+|....+.|++++.+..+.+|...   .+  .-+....|++++......
T Consensus        40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~  119 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK  119 (440)
T ss_pred             ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence            3466777777777644    11     2456788899999999999999888531   12  235677888888888788


Q ss_pred             ChhHHHHHHHHHhhc-CCCCCh----hHHHHHHHHHHhcCChHHHHHHHHhcccC---------------chhhHHHHHH
Q 036263          177 TLGIGLWMHRYVPKQ-DFKDNV----RVCNTLMDVYSRFGCIEFARQVFQRMHKR---------------TLVSWNSIIV  236 (305)
Q Consensus       177 ~~~~a~~~~~~~~~~-~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~li~  236 (305)
                      +.+....+++.-.+. .-.-+.    .|-+-|...|...|.+.+..++++++.+.               -...|..=|.
T Consensus       120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ  199 (440)
T KOG1464|consen  120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ  199 (440)
T ss_pred             hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence            777776666543321 001111    23355677777788888888888887621               2357777888


Q ss_pred             HHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHH----HhccCcHHHHHH
Q 036263          237 GFAVNGFVGEALEYFNLMQKG-VFKTDEVSFTGALTA----CSHAGLIEDGLQ  284 (305)
Q Consensus       237 ~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~----~~~~g~~~~a~~  284 (305)
                      .|....+-.+-..++++...- ...|.+.....+-.+    ..+.|++++|-.
T Consensus       200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT  252 (440)
T KOG1464|consen  200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT  252 (440)
T ss_pred             hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence            888888888888888875432 244666666554332    335677777654

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=83.15  E-value=7.4  Score=30.46  Aligned_cols=73  Identities=8%  Similarity=0.036  Sum_probs=35.1

Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcC--CCCChhHHHHHHH
Q 036263          131 TALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQD--FKDNVRVCNTLMD  205 (305)
Q Consensus       131 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~  205 (305)
                      +.-++.+.+.+.+++++...++=.+.  +| |..+-..+++.++-.|++++|..=++..-+..  ..+...+|..+|.
T Consensus         5 ~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir   80 (273)
T COG4455           5 RDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR   80 (273)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence            34455555566666666555543332  33 34444455555666666666554444332221  1233444544444

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=82.68  E-value=16  Score=26.65  Aligned_cols=17  Identities=12%  Similarity=0.169  Sum_probs=8.4

Q ss_pred             HhcCChHHHHHHHHhcc
Q 036263          208 SRFGCIEFARQVFQRMH  224 (305)
Q Consensus       208 ~~~g~~~~a~~~~~~~~  224 (305)
                      ...|++++|.++|+++.
T Consensus        55 i~rg~w~eA~rvlr~l~   71 (153)
T TIGR02561        55 IARGNYDEAARILRELL   71 (153)
T ss_pred             HHcCCHHHHHHHHHhhh
Confidence            34445555555555544

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=82.47  E-value=12  Score=25.01  Aligned_cols=45  Identities=16%  Similarity=0.147  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          246 EALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       246 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      ++.+-++.+....+.|++....+.+++|-+..++..|..+|+.++
T Consensus        25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK   69 (103)
T cd00923          25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK   69 (103)
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            333444444444555555555555555555555555555555444

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=81.85  E-value=6.4  Score=25.15  Aligned_cols=47  Identities=11%  Similarity=0.074  Sum_probs=29.9

Q ss_pred             hcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHH
Q 036263          240 VNGFVGEALEYFNLMQKGVFKTDE--VSFTGALTACSHAGLIEDGLQYF  286 (305)
Q Consensus       240 ~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~  286 (305)
                      ...+.++|+..|....+.-..|..  .++..++.+++..|++++++++-
T Consensus        18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA   66 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA   66 (80)
T ss_pred             ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455667777777776654332222  46677777788888777766543

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=81.73  E-value=15  Score=28.30  Aligned_cols=47  Identities=2%  Similarity=-0.129  Sum_probs=27.2

Q ss_pred             HHHhcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhccCcHHHHH
Q 036263          237 GFAVNGFVGEALEYFNLMQKG---VFKTDEVSFTGALTACSHAGLIEDGL  283 (305)
Q Consensus       237 ~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~a~  283 (305)
                      .|-...|.+++..++.+..+.   +-.+|+..+..|...+.+.|+++.|.
T Consensus       149 tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  149 TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            333355666666666555432   23456666666666666666666654

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=81.43  E-value=19  Score=27.79  Aligned_cols=68  Identities=12%  Similarity=-0.064  Sum_probs=32.1

Q ss_pred             HHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc-------cCchhhHHHHHHHHHhcCChHHHH
Q 036263          180 IGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH-------KRTLVSWNSIIVGFAVNGFVGEAL  248 (305)
Q Consensus       180 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~a~  248 (305)
                      .|.+.|-.+...+.--++.....|...|. ..+.+++..++-+..       +.|+..+..|...|-+.|+++.|.
T Consensus       124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            34444444444443334444444444443 334455555544443       234455555555555555555543

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=81.30  E-value=21  Score=27.02  Aligned_cols=161  Identities=15%  Similarity=0.040  Sum_probs=117.5

Q ss_pred             ccHHHHHHHHHcCCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHH-
Q 036263          128 DFWTALLNGFVKRDYFEEALEYFRVMQIS-GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD-  205 (305)
Q Consensus       128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~-  205 (305)
                      ..+......+...+.+..+...+...... ........+......+...+....+...+.........+ ......... 
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  138 (291)
T COG0457          60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG  138 (291)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence            45667778888889999998888877642 234456667777777788888999999999887765333 222333333 


Q ss_pred             HHHhcCChHHHHHHHHhcccCc------hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCc
Q 036263          206 VYSRFGCIEFARQVFQRMHKRT------LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT-DEVSFTGALTACSHAGL  278 (305)
Q Consensus       206 ~~~~~g~~~~a~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~  278 (305)
                      .+...|+++.|...+++....+      ...+......+...++.+.+...+.+..... .. ....+..+...+...++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  217 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK  217 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence            7889999999999999875421      2233333444677899999999999988853 22 36778888888888889


Q ss_pred             HHHHHHHHHHHH
Q 036263          279 IEDGLQYFDIMK  290 (305)
Q Consensus       279 ~~~a~~~~~~m~  290 (305)
                      ++.+...+....
T Consensus       218 ~~~a~~~~~~~~  229 (291)
T COG0457         218 YEEALEYYEKAL  229 (291)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988877

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=80.86  E-value=45  Score=30.55  Aligned_cols=148  Identities=10%  Similarity=0.103  Sum_probs=88.5

Q ss_pred             HHcCCChHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHhcCcC-----ChhHHHHHHHHHhhcCCCCChhHHHHHH
Q 036263          137 FVKRDYFEEALEYFRVMQI-------SGVEPDYLTIISVLNVCANVR-----TLGIGLWMHRYVPKQDFKDNVRVCNTLM  204 (305)
Q Consensus       137 ~~~~g~~~~a~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~li  204 (305)
                      +....+.+.|+.+|+...+       .|..   ....-+-.+|.+..     +.+.|..++....+.| .|+....-..+
T Consensus       259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~---~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~  334 (552)
T KOG1550|consen  259 YGVTQDLESAIEYLKLAAESFKKAATKGLP---PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVL  334 (552)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHhhcCC---ccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHH
Confidence            4466789999999988866       4422   23444444454432     5667899998888888 45555444444


Q ss_pred             HHHHh-cCChHHHHHHHHhcccC-chhhHHHHHHHHH----hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 036263          205 DVYSR-FGCIEFARQVFQRMHKR-TLVSWNSIIVGFA----VNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL  278 (305)
Q Consensus       205 ~~~~~-~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  278 (305)
                      ..... ..+...|.++|....+. ....+-.+...|.    ...+.+.|..++++..+.| .|...--...+..+.. ++
T Consensus       335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~  412 (552)
T KOG1550|consen  335 YETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GR  412 (552)
T ss_pred             HHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cc
Confidence            33333 34578899999888743 3333322322222    3457888999999988887 3432222233344444 66


Q ss_pred             HHHHHHHHHHHH
Q 036263          279 IEDGLQYFDIMK  290 (305)
Q Consensus       279 ~~~a~~~~~~m~  290 (305)
                      ++.+...+..+.
T Consensus       413 ~~~~~~~~~~~a  424 (552)
T KOG1550|consen  413 YDTALALYLYLA  424 (552)
T ss_pred             ccHHHHHHHHHH
Confidence            666665555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	305
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	5e-08
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 53.3 bits (126), Expect = 5e-08
 Identities = 20/132 (15%), Positives = 46/132 (34%), Gaps = 10/132 (7%)

Query: 103 ALLDMYAKFGRMDLATVVFDVMRG---------CDFWTALLNGFVKRDYFEEALEYFRVM 153
           A         ++ LA  +  V  G          D + A++ G+ ++  F+E +    ++
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191

Query: 154 QISGVEPDYLTIISVLNVCANV-RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC 212
           + +G+ PD L+  + L       +  G        + ++  K        L+    R   
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV 251

Query: 213 IEFARQVFQRMH 224
           ++   +V     
Sbjct: 252 LKAVHKVKPTFS 263

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 53.3 bits (126), Expect = 5e-08
 Identities = 18/181 (9%), Positives = 50/181 (27%), Gaps = 10/181 (5%)

Query: 131 TALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANV----RTLGIGLWMHR 186
             LL     +   +           + +      +++    C           + +  H 
Sbjct: 96  ARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHG 155

Query: 187 YVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR----TLVSWNSIIVGFAVNG 242
              K+     + + N +M  ++R G  +    V   +        L+S+ + +       
Sbjct: 156 QRQKRKLLT-LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQD 214

Query: 243 FVGEALE-YFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEH 301
                +E     M +   K   +     L+    A +++   +         ++ P +  
Sbjct: 215 QDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNT 274

Query: 302 H 302
            
Sbjct: 275 S 275

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 4e-06
 Identities = 36/259 (13%), Positives = 75/259 (28%), Gaps = 70/259 (27%)

Query: 34  QTNNSKSTIDTTVQ----W-TSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLS 88
           Q    +  ++  ++    +  S I    R   ++       R RLY  N           
Sbjct: 75  QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV--------- 125

Query: 89  GCADFPSNNV-------MVSTALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRD 141
               F   NV        +  ALL++           V+ D + G       +   V   
Sbjct: 126 ----FAKYNVSRLQPYLKLRQALLELRPAKN------VLIDGVLGSGKTW--VALDVCLS 173

Query: 142 YFEEALEYFRV--MQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV 199
           Y  +    F++  + +         +  +  +   +           +  + D   N+++
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI--------DPNWTSRSDHSSNIKL 225

Query: 200 -CNTLMDVYSRFGCIEFARQVFQRMHKRTL-----VSWNSIIVGFAVNGFVGEALEYFNL 253
             +++     R         +  + ++  L     V  N+            +A   FNL
Sbjct: 226 RIHSIQAELRRL--------LKSKPYENCLLVLLNV-QNA------------KAWNAFNL 264

Query: 254 MQKGVFKTDEVSFTGALTA 272
             K +  T     T  L+A
Sbjct: 265 SCKILLTTRFKQVTDFLSA 283

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	305
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.92
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.92
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.82
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.82
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.81
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.8
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.79
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.78
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.74
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.73
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.7
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.69
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.66
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.65
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.65
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.64
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.64
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.63
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.61
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.6
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.6
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.6
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.59
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.59
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.58
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.58
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.58
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.58
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.57
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.56
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.55
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.54
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.54
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.54
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.53
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.53
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.52
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.52
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.49
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.47
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.44
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.43
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.43
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.41
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.39
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.37
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.37
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.37
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.36
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.35
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.35
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.33
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.33
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.3
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.3
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.29
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.27
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.25
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.23
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.22
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.22
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.2
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.2
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.19
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.18
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.17
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.14
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.11
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.11
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.11
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.11
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.1
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.07
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.06
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.04
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.03
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.03
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.01
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.0
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.98
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.97
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.95
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.95
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.92
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.92
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.88
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.88
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.87
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.85
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.84
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.84
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.83
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.82
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.82
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.81
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.81
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.81
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.78
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.78
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.77
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.77
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.76
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.75
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.75
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.74
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.73
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.72
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.72
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.69
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.69
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.68
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.68
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.68
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.67
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.66
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.63
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.61
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.61
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.6
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.59
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.58
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.58
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.56
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.54
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.53
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.53
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.51
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.5
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.49
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.47
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.46
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.46
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.43
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.43
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.42
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.42
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.41
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.4
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.4
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.39
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.38
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.38
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.37
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.35
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.35
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.33
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.3
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.29
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.29
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.27
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.27
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.24
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.23
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.23
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.21
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.18
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.18
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.17
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.16
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.16
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.15
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.15
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.1
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.1
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.09
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.08
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.06
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.05
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.05
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.04
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.0
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.97
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.96
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.94
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.94
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.93
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.93
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.92
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.89
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.83
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.81
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.8
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.77
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.76
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.75
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.7
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.69
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.68
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.61
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.61
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.6
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.57
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.53
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.42
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.42
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.38
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.29
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.28
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.26
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.23
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.21
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.2
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.12
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.12
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.1
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.07
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.04
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.03
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.03
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.96
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.89
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.83
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.76
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.44
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	96.43
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.23
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.22
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.84
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	95.74
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.63
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	95.57
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.55
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.45
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.12
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	94.97
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.68
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	94.43
1pc2_A	152	Mitochondria fission protein; unknown function; NM	94.41
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.59
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.35
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	93.2
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	93.1
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	92.92
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	92.84
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	92.83
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	90.97
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	90.94
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	90.56
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	90.11
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	89.2
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	87.24
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	85.46
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	85.04
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	84.32
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	84.3
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	83.94
2p58_C	116	Putative type III secretion protein YSCG; type III	83.87
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	82.99
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	82.25
2nsz_A	129	Programmed cell death protein 4; PDCD4, tumor supp	81.68
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	81.62
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	81.09
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	80.46
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	80.45

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=8e-35  Score=254.69  Aligned_cols=195  Identities=12%  Similarity=0.089  Sum_probs=178.1

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDV  123 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~  123 (305)
                      +...++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|++.                  +...++      
T Consensus        25 pe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~------------------~~~~~~------   80 (501)
T 4g26_A           25 PEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLA------------------EAATES------   80 (501)
T ss_dssp             HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTC------------------CCCSSS------
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhC------------------Cchhhh------
Confidence            34568899999999999999999999999999999999998888875443                  332211      


Q ss_pred             cCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHH
Q 036263          124 MRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL  203 (305)
Q Consensus       124 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  203 (305)
                                    .+.+.++.|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+++
T Consensus        81 --------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~l  146 (501)
T 4g26_A           81 --------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPA  146 (501)
T ss_dssp             --------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             --------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHH
Confidence                          234557889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHhcc----cCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 036263          204 MDVYSRFGCIEFARQVFQRMH----KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA  276 (305)
Q Consensus       204 i~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~  276 (305)
                      |.+|++.|++++|.++|++|.    .||..+|++||.+|++.|++++|.+++++|++.|+.|+..||+.++..|...
T Consensus       147 I~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          147 LFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            999999999999999999998    4899999999999999999999999999999999999999999999998764

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=1.5e-34  Score=253.06  Aligned_cols=176  Identities=15%  Similarity=0.127  Sum_probs=169.3

Q ss_pred             ccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCC---------hhHHHHHHHHHhhcCCCCChh
Q 036263          128 DFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRT---------LGIGLWMHRYVPKQDFKDNVR  198 (305)
Q Consensus       128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~  198 (305)
                      .+++.+|.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.+.         +++|.++|++|.+.|+.||..
T Consensus        27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~  106 (501)
T 4g26_A           27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA  106 (501)
T ss_dssp             HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence            35888999999999999999999999999999999999999999987664         678999999999999999999


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhcc----cCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 036263          199 VCNTLMDVYSRFGCIEFARQVFQRMH----KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACS  274 (305)
Q Consensus       199 ~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~  274 (305)
                      +|+++|.+|++.|++++|.++|++|.    .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|+
T Consensus       107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~  186 (501)
T 4g26_A          107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM  186 (501)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence            99999999999999999999999998    47999999999999999999999999999999999999999999999999


Q ss_pred             ccCcHHHHHHHHHHHHHHhCCCCCcccccc
Q 036263          275 HAGLIEDGLQYFDIMKKIYRVSPQIEHHGC  304 (305)
Q Consensus       275 ~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~  304 (305)
                      +.|++++|.+++++|+ ..|..|+..||+.
T Consensus       187 ~~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~  215 (501)
T 4g26_A          187 DTKNADKVYKTLQRLR-DLVRQVSKSTFDM  215 (501)
T ss_dssp             HTTCHHHHHHHHHHHH-HHTSSBCHHHHHH
T ss_pred             hCCCHHHHHHHHHHHH-HhCCCcCHHHHHH
Confidence            9999999999999999 9999999999975

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.92  E-value=9.7e-24  Score=189.65  Aligned_cols=244  Identities=9%  Similarity=-0.020  Sum_probs=219.8

Q ss_pred             CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC----------------CChhHHHHHHH
Q 036263           43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----------------NNVMVSTALLD  106 (305)
Q Consensus        43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------------~~~~~~~~ll~  106 (305)
                      ++..+|+.++..|.+.|++++|+++|+++.+.+ +.+..++..++.++.+.++                .+..+++.++.
T Consensus       303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  381 (597)
T 2xpi_A          303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGI  381 (597)
T ss_dssp             GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence            799999999999999999999999999999764 3367788888888877776                46788999999


Q ss_pred             HHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHH
Q 036263          107 MYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG  181 (305)
Q Consensus       107 ~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a  181 (305)
                      .|.+.|++++|.++|+++..     ..+|+.++..+.+.|++++|.++|+++.+.+ +.+..+|..+..+|.+.|++++|
T Consensus       382 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A  460 (597)
T 2xpi_A          382 YYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLA  460 (597)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999998843     5579999999999999999999999998753 34788999999999999999999


Q ss_pred             HHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--------Cc--hhhHHHHHHHHHhcCChHHHHHHH
Q 036263          182 LWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--------RT--LVSWNSIIVGFAVNGFVGEALEYF  251 (305)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------~~--~~~~~~li~~~~~~g~~~~a~~~~  251 (305)
                      .++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+        |+  ..+|..++.+|.+.|++++|.+++
T Consensus       461 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~  539 (597)
T 2xpi_A          461 NEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL  539 (597)
T ss_dssp             HHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            99999999875 56789999999999999999999999999853        44  679999999999999999999999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          252 NLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       252 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      +++.+.+ +.+..+|..+..+|.+.|++++|.++|+++.
T Consensus       540 ~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  577 (597)
T 2xpi_A          540 NQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESL  577 (597)
T ss_dssp             HHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            9998865 3478999999999999999999999999998

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.92  E-value=7.6e-23  Score=183.82  Aligned_cols=244  Identities=9%  Similarity=-0.067  Sum_probs=135.2

Q ss_pred             CCchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HhhHHHH----------------------------------
Q 036263           42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPS-HITFVTL----------------------------------   86 (305)
Q Consensus        42 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l----------------------------------   86 (305)
                      .++..+|+.++.+|.+.|++++|+++|++|.+.+  |+ ...+..+                                  
T Consensus       197 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  274 (597)
T 2xpi_A          197 KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSL  274 (597)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHH
Confidence            4478999999999999999999999999998753  43 2222222                                  


Q ss_pred             ----HHhhcCCCC---------------CChhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCC
Q 036263           87 ----LSGCADFPS---------------NNVMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDY  142 (305)
Q Consensus        87 ----l~~~~~~~~---------------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~  142 (305)
                          +..+.+.++               ++..+++.++.+|.+.|++++|..+|+++..     ..+|+.++.++.+.|+
T Consensus       275 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  354 (597)
T 2xpi_A          275 YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGE  354 (597)
T ss_dssp             HHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTC
T ss_pred             HHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCC
Confidence                122222222               6778888888888888888888888888743     3445555555555555


Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036263          143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQR  222 (305)
Q Consensus       143 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  222 (305)
                      +++|.++++++.+.. +.+..+++.+...|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|++
T Consensus       355 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  432 (597)
T 2xpi_A          355 KNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTT  432 (597)
T ss_dssp             HHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            555555555554321 2234445555555555555555555555544432 23344455555555555555555555544


Q ss_pred             ccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          223 MHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       223 ~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      +.+   .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|..++..+.+.|++++|.++|+++.
T Consensus       433 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  502 (597)
T 2xpi_A          433 AARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNAL  502 (597)
T ss_dssp             HHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            432   133444444444444444444444444444321 1233444444444444444444444444443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.82  E-value=2e-17  Score=140.76  Aligned_cols=244  Identities=11%  Similarity=0.087  Sum_probs=147.4

Q ss_pred             CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HhhHHHHHHhhcCCCC---------------CC-hhHHHHHH
Q 036263           43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPS-HITFVTLLSGCADFPS---------------NN-VMVSTALL  105 (305)
Q Consensus        43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~---------------~~-~~~~~~ll  105 (305)
                      .+..+|..+...+.+.|++++|++.|+++.+.  .|+ ..+|..+..++...++               |+ ...+..+.
T Consensus        65 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  142 (388)
T 1w3b_A           65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLG  142 (388)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            46678888888888888888888888888763  454 4456666666666555               33 33455666


Q ss_pred             HHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcC-----------------------
Q 036263          106 DMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISG-----------------------  157 (305)
Q Consensus       106 ~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----------------------  157 (305)
                      ..+...|++++|...|+++..     ..+|..+...+.+.|++++|...|+++.+..                       
T Consensus       143 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A  222 (388)
T 1w3b_A          143 NLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA  222 (388)
T ss_dssp             HHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence            666667777777777766633     3446666666666666666666666665431                       


Q ss_pred             ---------CCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--
Q 036263          158 ---------VEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--  225 (305)
Q Consensus       158 ---------~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--  225 (305)
                               +.| +..++..+...+...|++++|...++++.+.+ +.+..+|..+..+|.+.|++++|.+.|+++.+  
T Consensus       223 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  301 (388)
T 1w3b_A          223 VAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC  301 (388)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence                     122 23444555555555555555555555555543 33345555555555555666666555555542  


Q ss_pred             -CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          226 -RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       226 -~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                       .+..+|..+...+...|++++|...++++.+.. +.+..++..+..++.+.|++++|...|+.+.
T Consensus       302 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  366 (388)
T 1w3b_A          302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAI  366 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence             244556666666666666666666666655531 2234556666666666666666666666655

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.82  E-value=2.8e-17  Score=139.93  Aligned_cols=173  Identities=10%  Similarity=0.031  Sum_probs=137.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhc
Q 036263          100 VSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCA  173 (305)
Q Consensus       100 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~  173 (305)
                      .+..+...+...|++++|...|++...     ..++..+...+.+.|++++|.+.|+++.+.  .| +..++..+...+.
T Consensus       205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~  282 (388)
T 1w3b_A          205 AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALK  282 (388)
T ss_dssp             HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHH
Confidence            344444444444444444444444322     345788899999999999999999999875  44 5778999999999


Q ss_pred             CcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHH
Q 036263          174 NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEY  250 (305)
Q Consensus       174 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~  250 (305)
                      +.|++++|...++++.+.. +.+..++..+...+.+.|++++|.+.++++.+  | +..++..+...|.+.|++++|...
T Consensus       283 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  361 (388)
T 1w3b_A          283 EKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH  361 (388)
T ss_dssp             HHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9999999999999999875 67889999999999999999999999999875  3 567899999999999999999999


Q ss_pred             HHHHHHCCCCC-CHHHHHHHHHHHhccC
Q 036263          251 FNLMQKGVFKT-DEVSFTGALTACSHAG  277 (305)
Q Consensus       251 ~~~m~~~g~~p-~~~~~~~li~~~~~~g  277 (305)
                      |+++.+.  .| +...|..+...+.+.|
T Consensus       362 ~~~a~~~--~p~~~~a~~~lg~~~~~~~  387 (388)
T 1w3b_A          362 YKEAIRI--SPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence            9999884  45 4556666666555444

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.81  E-value=6.1e-20  Score=166.70  Aligned_cols=118  Identities=12%  Similarity=0.106  Sum_probs=104.4

Q ss_pred             CCCHHHHHHHHHHhcCcCChhHHHHHHHHHh---hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc----cCchhhH
Q 036263          159 EPDYLTIISVLNVCANVRTLGIGLWMHRYVP---KQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH----KRTLVSW  231 (305)
Q Consensus       159 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~  231 (305)
                      ..-..||+++|++|++.|++++|.++|++|.   +.|+.||..|||+||++||+.|++++|.++|++|.    .||+.||
T Consensus       124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY  203 (1134)
T 3spa_A          124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY  203 (1134)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence            3346789999999999999999999998775   45889999999999999999999999999999998    4899999


Q ss_pred             HHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 036263          232 NSIIVGFAVNGFV-GEALEYFNLMQKGVFKTDEVSFTGALTACSHA  276 (305)
Q Consensus       232 ~~li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~  276 (305)
                      |++|.++++.|+. ++|.++|++|.+.|+.||..||+.++.++.+.
T Consensus       204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~  249 (1134)
T 3spa_A          204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA  249 (1134)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence            9999999999985 78899999999999999999999998766554

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.80  E-value=6.2e-20  Score=166.62  Aligned_cols=146  Identities=10%  Similarity=-0.021  Sum_probs=119.9

Q ss_pred             cccHHHHHHHHHcCCChHHHHHHHHHHH---HcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHH
Q 036263          127 CDFWTALLNGFVKRDYFEEALEYFRVMQ---ISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL  203 (305)
Q Consensus       127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  203 (305)
                      ..+||+||.+|++.|++++|.++|++|.   ..|+.||..|||+||++|++.|++++|.++|++|.+.|+.||..|||++
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            4579999999999999999999998875   4589999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCh-HHHHHHHHhcc----cCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC------HHHHHHHHHH
Q 036263          204 MDVYSRFGCI-EFARQVFQRMH----KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD------EVSFTGALTA  272 (305)
Q Consensus       204 i~~~~~~g~~-~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~------~~~~~~li~~  272 (305)
                      |+++|+.|+. ++|.++|++|.    .||..+|+.++.++.+.    .+++..+++ ..++.|+      ..+...|...
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl  281 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV  281 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence            9999999984 78999999998    48999999998766654    444444444 3345554      4455555555


Q ss_pred             HhccC
Q 036263          273 CSHAG  277 (305)
Q Consensus       273 ~~~~g  277 (305)
                      |.+.+
T Consensus       282 ~s~d~  286 (1134)
T 3spa_A          282 YAKDG  286 (1134)
T ss_dssp             HCCCS
T ss_pred             HccCC
Confidence            55544

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.79  E-value=7.2e-17  Score=139.83  Aligned_cols=242  Identities=10%  Similarity=0.001  Sum_probs=126.8

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC----------------CChhHHHHHHHH
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----------------NNVMVSTALLDM  107 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------------~~~~~~~~ll~~  107 (305)
                      +...|..+...+.+.|++++|+.+|+++.+. .+.+..++..+..++...++                .+...+..+..+
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  103 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL  103 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            5566677777777777777777777776653 23345566666666666655                334556666666


Q ss_pred             HHhcCChHHHHHHHHhcCc-----c---ccHHHH------------HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 036263          108 YAKFGRMDLATVVFDVMRG-----C---DFWTAL------------LNGFVKRDYFEEALEYFRVMQISGVEPDYLTIIS  167 (305)
Q Consensus       108 ~~~~g~~~~a~~~~~~~~~-----~---~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~  167 (305)
                      +.+.|++++|...|+.+..     .   ..+..+            ...+...|++++|...|+++.+.. +.+..++..
T Consensus       104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~  182 (450)
T 2y4t_A          104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELREL  182 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence            6666666666666666533     1   233333            222555566666666666555431 224455555


Q ss_pred             HHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHH----------
Q 036263          168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSI----------  234 (305)
Q Consensus       168 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l----------  234 (305)
                      +..++...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+++.+  | +...+..+          
T Consensus       183 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  261 (450)
T 2y4t_A          183 RAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI  261 (450)
T ss_dssp             HHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555555443 33445555555555555555555555555432  1 12222222          


Q ss_pred             --HHHHHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          235 --IVGFAVNGFVGEALEYFNLMQKGVFKTD-----EVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       235 --i~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                        ...|...|++++|...|+++.+.  .|+     ...+..+..++.+.|++++|...++.+.
T Consensus       262 ~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  322 (450)
T 2y4t_A          262 ESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL  322 (450)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence              34444445555555555444442  222     2234444444444444444444444443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.78  E-value=3.2e-16  Score=135.80  Aligned_cols=250  Identities=11%  Similarity=0.029  Sum_probs=207.0

Q ss_pred             CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC---------------CCh----hHHHH
Q 036263           43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------------NNV----MVSTA  103 (305)
Q Consensus        43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------------~~~----~~~~~  103 (305)
                      .+...|..+..++.+.|++++|+..|+++.+.+ +.+...+..+...+...++               |+.    ..+..
T Consensus        58 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  136 (450)
T 2y4t_A           58 DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQ  136 (450)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence            467888999999999999999999999988753 2346777777777877777               433    44444


Q ss_pred             H------------HHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 036263          104 L------------LDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTII  166 (305)
Q Consensus       104 l------------l~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~  166 (305)
                      +            ...+.+.|++++|...|+.+..     ...+..+...+.+.|++++|...|+++.+.. +.+..++.
T Consensus       137 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~  215 (450)
T 2y4t_A          137 LIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFY  215 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence            4            4448899999999999998854     5568899999999999999999999987752 34688999


Q ss_pred             HHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHH------------HHHHHhcCChHHHHHHHHhccc--Cc-----
Q 036263          167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL------------MDVYSRFGCIEFARQVFQRMHK--RT-----  227 (305)
Q Consensus       167 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~~~~--~~-----  227 (305)
                      .+...+...|++++|...++.+.+.. +.+...+..+            ...|.+.|++++|...|+++.+  |+     
T Consensus       216 ~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  294 (450)
T 2y4t_A          216 KISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYT  294 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHH
Confidence            99999999999999999999998764 4455555555            8899999999999999999974  43     


Q ss_pred             hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCc
Q 036263          228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQI  299 (305)
Q Consensus       228 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~  299 (305)
                      ...|..+...+.+.|++++|...++++.+.. +.+..+|..+..+|...|++++|...++.+.   .+.|+.
T Consensus       295 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---~~~p~~  362 (450)
T 2y4t_A          295 VRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQ---EHNEND  362 (450)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTSSSC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCcch
Confidence            4578889999999999999999999988753 3367899999999999999999999999988   455553

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.74  E-value=1.4e-15  Score=126.01  Aligned_cols=249  Identities=11%  Similarity=-0.005  Sum_probs=199.8

Q ss_pred             CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC----------------CChhHHHHHHH
Q 036263           43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----------------NNVMVSTALLD  106 (305)
Q Consensus        43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------------~~~~~~~~ll~  106 (305)
                      .+...+..+...+...|++++|+++|+++.+.. +.+...+..+...+...++                .+...+..+..
T Consensus        20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~   98 (330)
T 3hym_B           20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC   98 (330)
T ss_dssp             CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence            456677788888888999999999999988752 2233444444455555555                45678888889


Q ss_pred             HHHhcC-ChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhH
Q 036263          107 MYAKFG-RMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGI  180 (305)
Q Consensus       107 ~~~~~g-~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~  180 (305)
                      .+...| ++++|...|++...     ...|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus        99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~  177 (330)
T 3hym_B           99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL  177 (330)
T ss_dssp             HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence            999999 89999999988754     5568889999999999999999999987753 2245667778888999999999


Q ss_pred             HHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc-----------C-chhhHHHHHHHHHhcCChHHHH
Q 036263          181 GLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK-----------R-TLVSWNSIIVGFAVNGFVGEAL  248 (305)
Q Consensus       181 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----------~-~~~~~~~li~~~~~~g~~~~a~  248 (305)
                      |...++...+.. +.+...+..+...|...|++++|...+++..+           + +..+|..+...|...|++++|.
T Consensus       178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  256 (330)
T 3hym_B          178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL  256 (330)
T ss_dssp             HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence            999999998875 56688899999999999999999999988763           2 3468889999999999999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCC
Q 036263          249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQ  298 (305)
Q Consensus       249 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~  298 (305)
                      ..+++..+.. +.+...+..+...+.+.|++++|.+.++...   .+.|+
T Consensus       257 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~  302 (330)
T 3hym_B          257 DYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTAL---GLRRD  302 (330)
T ss_dssp             HHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT---TTCSC
T ss_pred             HHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHH---ccCCC
Confidence            9999988753 2356788888999999999999999999876   44554

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.73  E-value=9.2e-16  Score=129.36  Aligned_cols=224  Identities=13%  Similarity=0.001  Sum_probs=137.8

Q ss_pred             CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036263           43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNP-SHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVF  121 (305)
Q Consensus        43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~  121 (305)
                      .+...|..+...+.+.|++++|++.|+++.+.  .| +..+                  +..+..++.+.|++++|...|
T Consensus        63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~------------------~~~lg~~~~~~g~~~~A~~~~  122 (365)
T 4eqf_A           63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEA------------------WQFLGITQAENENEQAAIVAL  122 (365)
T ss_dssp             TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHH------------------HHHHHHHHHHTTCHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHH------------------HHHHHHHHHHCCCHHHHHHHH
Confidence            45667889999999999999999999999874  33 3333                  455555566666666666666


Q ss_pred             HhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHhcCcCChhHHHHHH
Q 036263          122 DVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD-----------YLTIISVLNVCANVRTLGIGLWMH  185 (305)
Q Consensus       122 ~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----------~~t~~~ll~~~~~~~~~~~a~~~~  185 (305)
                      +++..     ...|..+...+...|++++|...|+++.+.  .|+           ...+..+...+...|++++|...+
T Consensus       123 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  200 (365)
T 4eqf_A          123 QRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELY  200 (365)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHH
Confidence            66533     344666666666666666666666666543  222           122233455666666666666666


Q ss_pred             HHHhhcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 036263          186 RYVPKQDFKD--NVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK  260 (305)
Q Consensus       186 ~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  260 (305)
                      +++.+.. +.  +..++..+...|...|++++|.+.|++..+   .+..+|..+..+|...|++++|...|++..+.. +
T Consensus       201 ~~al~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p  278 (365)
T 4eqf_A          201 LEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-P  278 (365)
T ss_dssp             HHHHHHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred             HHHHHhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C
Confidence            6666653 22  456666666666666666666666666552   245566666666666666666666666666532 2


Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          261 TDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       261 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      .+..++..+..++.+.|++++|...|+...
T Consensus       279 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  308 (365)
T 4eqf_A          279 GFIRSRYNLGISCINLGAYREAVSNFLTAL  308 (365)
T ss_dssp             TCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            235566666666666666666666666665

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.70  E-value=3.5e-15  Score=125.68  Aligned_cols=242  Identities=14%  Similarity=-0.021  Sum_probs=128.4

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC----------------CChhHHHHHHHH
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----------------NNVMVSTALLDM  107 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------------~~~~~~~~ll~~  107 (305)
                      +...|..+...+.+.|++++|+..|+++.+.. +.+...+..+-..+...++                .+..++..+..+
T Consensus        63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~  141 (368)
T 1fch_A           63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS  141 (368)
T ss_dssp             TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            56778889999999999999999999999852 2244455444444444444                233444445555


Q ss_pred             HHhcCChHHHHHHHHhcCc-----cccHHH---------------HHHHHHcCCChHHHHHHHHHHHHcCCC-CCHHHHH
Q 036263          108 YAKFGRMDLATVVFDVMRG-----CDFWTA---------------LLNGFVKRDYFEEALEYFRVMQISGVE-PDYLTII  166 (305)
Q Consensus       108 ~~~~g~~~~a~~~~~~~~~-----~~~~~~---------------li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~  166 (305)
                      +.+.|++++|...++++..     ...+..               .+..+...|++++|...|+++.+.... ++..++.
T Consensus       142 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~  221 (368)
T 1fch_A          142 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC  221 (368)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHH
Confidence            5555555555555544422     000100               122222445555555555554443211 0245555


Q ss_pred             HHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCC
Q 036263          167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGF  243 (305)
Q Consensus       167 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~  243 (305)
                      .+...+...|++++|...++++.+.. +.+...+..+...|.+.|++++|...|+++.+   .+...+..+...|...|+
T Consensus       222 ~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~  300 (368)
T 1fch_A          222 GLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA  300 (368)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence            55555555555555555555555543 33445555555555555555555555555542   234455555555555555


Q ss_pred             hHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHhccCcHHHHHHHHH
Q 036263          244 VGEALEYFNLMQKGVFKT----------DEVSFTGALTACSHAGLIEDGLQYFD  287 (305)
Q Consensus       244 ~~~a~~~~~~m~~~g~~p----------~~~~~~~li~~~~~~g~~~~a~~~~~  287 (305)
                      +++|...|++..+.....          ...+|..+..++...|++++|..+++
T Consensus       301 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  354 (368)
T 1fch_A          301 HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA  354 (368)
T ss_dssp             HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence            555555555554421000          13455555555555555555555543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.69  E-value=6.1e-15  Score=121.91  Aligned_cols=241  Identities=10%  Similarity=-0.079  Sum_probs=134.1

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC----------------CChhHHHHHHHH
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----------------NNVMVSTALLDM  107 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------------~~~~~~~~ll~~  107 (305)
                      +...|-.....+...|++++|..+|+++.+.. +.+...+..+...+...++                .+...+..+...
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~   98 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS   98 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence            55567777788888999999999999887742 2234444444444444444                233445555555


Q ss_pred             HHhcCChHHHHHHHHhcCc-----cccHHHH--------------HH-HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 036263          108 YAKFGRMDLATVVFDVMRG-----CDFWTAL--------------LN-GFVKRDYFEEALEYFRVMQISGVEPDYLTIIS  167 (305)
Q Consensus       108 ~~~~g~~~~a~~~~~~~~~-----~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~  167 (305)
                      +.+.|++++|...++.+..     ...+..+              .. .+...|++++|...+++..+.. +.+..++..
T Consensus        99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~  177 (327)
T 3cv0_A           99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS  177 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence            5555666665555555432     1112111              11 2444455556666555554432 224555555


Q ss_pred             HHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCCh
Q 036263          168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFV  244 (305)
Q Consensus       168 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~  244 (305)
                      +...+...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.+   .+...|..+...|...|++
T Consensus       178 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~  256 (327)
T 3cv0_A          178 LGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY  256 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence            6666666666666666666665543 33455566666666666666666666665542   2345556666666666666


Q ss_pred             HHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHhccCcHHHHHHHHH
Q 036263          245 GEALEYFNLMQKGVFKT-----------DEVSFTGALTACSHAGLIEDGLQYFD  287 (305)
Q Consensus       245 ~~a~~~~~~m~~~g~~p-----------~~~~~~~li~~~~~~g~~~~a~~~~~  287 (305)
                      ++|.+.+++..+.....           +..++..+..++.+.|++++|..+++
T Consensus       257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  310 (327)
T 3cv0_A          257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA  310 (327)
T ss_dssp             HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            66666666655432110           24555556666666666666666554

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.66  E-value=2.6e-13  Score=113.44  Aligned_cols=247  Identities=11%  Similarity=0.014  Sum_probs=177.2

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHhhcCCCC---------------C---C-hhHHHH
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNP-SHITFVTLLSGCADFPS---------------N---N-VMVSTA  103 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~---------------~---~-~~~~~~  103 (305)
                      +...|..+...+...|++++|+..|+++.+.  .| +...+..+-..+...++               |   + ...+..
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  113 (359)
T 3ieg_A           36 NYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQ  113 (359)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHH
Confidence            4556777777777777777777777777664  23 34455555555545444               3   2 222322


Q ss_pred             H------------HHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 036263          104 L------------LDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTII  166 (305)
Q Consensus       104 l------------l~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~  166 (305)
                      +            ...+...|++++|...++.+..     ...+..+...+...|++++|...+++..+.. +.+..++.
T Consensus       114 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  192 (359)
T 3ieg_A          114 LVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFY  192 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence            2            4677888888888888887743     4557778888888888999888888877642 33677888


Q ss_pred             HHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHH------------HHHHHHHhcCChHHHHHHHHhccc--Cc-h---
Q 036263          167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN------------TLMDVYSRFGCIEFARQVFQRMHK--RT-L---  228 (305)
Q Consensus       167 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~li~~~~~~g~~~~a~~~~~~~~~--~~-~---  228 (305)
                      .+...+...|++++|...++...+.. +.+...+.            .+...+.+.|++++|...++++.+  |+ .   
T Consensus       193 ~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  271 (359)
T 3ieg_A          193 KISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYT  271 (359)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHH
Confidence            88888888889999988888887764 33344333            225668888999999998888763  32 2   


Q ss_pred             -hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCC
Q 036263          229 -VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQ  298 (305)
Q Consensus       229 -~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~  298 (305)
                       ..+..+...+...|++++|...+++..+.. +.+..++..+...+.+.|++++|...|+...   .+.|+
T Consensus       272 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~---~~~p~  338 (359)
T 3ieg_A          272 VRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQ---EHNEN  338 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTCTT
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCC
Confidence             235557788889999999999999988752 3367888888889999999999999999887   45555

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.65  E-value=5.6e-16  Score=130.78  Aligned_cols=198  Identities=12%  Similarity=0.146  Sum_probs=87.1

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 036263           46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMR  125 (305)
Q Consensus        46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  125 (305)
                      .+|..+..++.+.|++++|++.|.+.      +|..+|..                  ++.++...|++++|+..++..+
T Consensus        33 ~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~------------------V~~~ae~~g~~EeAi~yl~~ar   88 (449)
T 1b89_A           33 AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYME------------------VVQAANTSGNWEELVKYLQMAR   88 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHH------------------HHHHHHhCCCHHHHHHHHHHHH
Confidence            49999999999999999999999652      45555544                  4445677888888888777765


Q ss_pred             c----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHH
Q 036263          126 G----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCN  201 (305)
Q Consensus       126 ~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  201 (305)
                      +    +.+.+.++.+|.+.|+++++.++++       .|+..+|..+...|...|.+++|..+|..+         ..|.
T Consensus        89 k~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~  152 (449)
T 1b89_A           89 KKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG  152 (449)
T ss_dssp             --------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHH
T ss_pred             HhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence            5    3568888889999999988887774       367778999999999999999999999876         3688


Q ss_pred             HHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 036263          202 TLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIED  281 (305)
Q Consensus       202 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  281 (305)
                      .+..++.+.|++++|.+.++++.  ++.+|..++.+|+..|+++.|......     +..++.-...++..|.+.|++++
T Consensus       153 ~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eE  225 (449)
T 1b89_A          153 RLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEE  225 (449)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHH
Confidence            89999999999999999998883  788899999999999999998554443     22334445568888889999999


Q ss_pred             HHHHHHHHH
Q 036263          282 GLQYFDIMK  290 (305)
Q Consensus       282 a~~~~~~m~  290 (305)
                      |..+++...
T Consensus       226 ai~lLe~aL  234 (449)
T 1b89_A          226 LITMLEAAL  234 (449)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            988888665

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.65  E-value=9.8e-14  Score=113.39  Aligned_cols=218  Identities=11%  Similarity=0.012  Sum_probs=167.8

Q ss_pred             CCCchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 036263           41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVV  120 (305)
Q Consensus        41 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~  120 (305)
                      ..|+..++..+...+...++.++|++.++++...+..|+...+                 +..+..++.+.|++++|++.
T Consensus        61 ~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~-----------------~~~la~~~~~~g~~~~Al~~  123 (291)
T 3mkr_A           61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTF-----------------LLMAASIYFYDQNPDAALRT  123 (291)
T ss_dssp             SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHH-----------------HHHHHHHHHHTTCHHHHHHH
T ss_pred             CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHH-----------------HHHHHHHHHHCCCHHHHHHH
Confidence            4567888888999999999999999999999887766765444                 34445568899999999999


Q ss_pred             HHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHhcCcCChhHHHHHHHHHhhcCCCCCh
Q 036263          121 FDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTI---ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNV  197 (305)
Q Consensus       121 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  197 (305)
                      +++-.....+..++..+.+.|++++|.+.|+++.+.  .|+....   ..++..+...|++++|..+|+++.+.. +.+.
T Consensus       124 l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~  200 (291)
T 3mkr_A          124 LHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTL  200 (291)
T ss_dssp             HTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCH
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcH
Confidence            999333667888899999999999999999999876  3553211   223344556689999999999998884 6788


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHH-HHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036263          198 RVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGE-ALEYFNLMQKGVFKTDEVSFTGALTAC  273 (305)
Q Consensus       198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~g~~p~~~~~~~li~~~  273 (305)
                      ..++.+..++.+.|++++|...|++..+  | +..++..++..+...|+.++ +.++++++.+.  .|+....   ....
T Consensus       201 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~~---~d~~  275 (291)
T 3mkr_A          201 LLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPFI---KEYR  275 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHH---HHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChHH---HHHH
Confidence            8999999999999999999999999773  3 67788899999999999876 57888988874  4654432   2333


Q ss_pred             hccCcHHHHH
Q 036263          274 SHAGLIEDGL  283 (305)
Q Consensus       274 ~~~g~~~~a~  283 (305)
                      .+.+.++++.
T Consensus       276 ~~~~~fd~~~  285 (291)
T 3mkr_A          276 AKENDFDRLV  285 (291)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4444444443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.64  E-value=2.2e-13  Score=113.84  Aligned_cols=242  Identities=10%  Similarity=-0.008  Sum_probs=191.1

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC---------------C-ChhHHHHHHHH
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS---------------N-NVMVSTALLDM  107 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------------~-~~~~~~~ll~~  107 (305)
                      |+..|..+...+...|++++|+..|+++.+.. +.+..++..+-..+...++               | +...+..+..+
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~   80 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL   80 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence            45678888899999999999999999998752 2346667666666666666               3 56788889999


Q ss_pred             HHhcCChHHHHHHHHhcCcc--------ccHHHH------------HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 036263          108 YAKFGRMDLATVVFDVMRGC--------DFWTAL------------LNGFVKRDYFEEALEYFRVMQISGVEPDYLTIIS  167 (305)
Q Consensus       108 ~~~~g~~~~a~~~~~~~~~~--------~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~  167 (305)
                      +.+.|++++|...|+.+...        ..+..+            ...+...|++++|...++++.+.. +.+...+..
T Consensus        81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~  159 (359)
T 3ieg_A           81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL  159 (359)
T ss_dssp             HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence            99999999999999888441        223333            578888999999999999987753 346778888


Q ss_pred             HHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHH------------
Q 036263          168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWN------------  232 (305)
Q Consensus       168 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~------------  232 (305)
                      +...+...|++++|...++...+.. +.+...+..+...|...|++++|...+++..+  | +...+.            
T Consensus       160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  238 (359)
T 3ieg_A          160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI  238 (359)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHH
Confidence            8999999999999999999998875 66788899999999999999999999998874  3 223222            


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          233 SIIVGFAVNGFVGEALEYFNLMQKGVFKTD-E----VSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       233 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~----~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      .+...+...|++++|...+++..+..  |+ .    ..+..+..++.+.|++++|...++...
T Consensus       239 ~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  299 (359)
T 3ieg_A          239 ESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVL  299 (359)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            23666889999999999999988753  43 2    234456778889999999999999988

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.64  E-value=1.2e-13  Score=110.15  Aligned_cols=217  Identities=10%  Similarity=0.003  Sum_probs=183.5

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDV  123 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~  123 (305)
                      ....|..+...+...|++++|+..|++..+..  .+..                  .+..+..++...|++++|...+++
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~------------------~~~~~~~~~~~~~~~~~A~~~~~~   63 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDIT------------------YLNNRAAAEYEKGEYETAISTLND   63 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTH------------------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHH------------------HHHHHHHHHHHcccHHHHHHHHHH
Confidence            34678888999999999999999999998865  4433                  345666778999999999999998


Q ss_pred             cCc------------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhc
Q 036263          124 MRG------------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ  191 (305)
Q Consensus       124 ~~~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~  191 (305)
                      ...            ...|..+...+...|++++|...|++..+.  .|+..       .+...|++++|...++.+.+.
T Consensus        64 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~a~~~~~~~~~~  134 (258)
T 3uq3_A           64 AVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEKELKKAEAEAYV  134 (258)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHHHHHHHHHHHHHHc
Confidence            754            356888999999999999999999998874  45533       355678899999999999886


Q ss_pred             CCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 036263          192 DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG  268 (305)
Q Consensus       192 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~  268 (305)
                      . +.+...+..+...+...|++++|...+++..+   .+...|..+...|...|++++|...+++..+.. +.+...+..
T Consensus       135 ~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~  212 (258)
T 3uq3_A          135 N-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIR  212 (258)
T ss_dssp             C-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             C-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHH
Confidence            4 45677889999999999999999999999874   367889999999999999999999999998853 345788889


Q ss_pred             HHHHHhccCcHHHHHHHHHHHHH
Q 036263          269 ALTACSHAGLIEDGLQYFDIMKK  291 (305)
Q Consensus       269 li~~~~~~g~~~~a~~~~~~m~~  291 (305)
                      +..++.+.|++++|...++...+
T Consensus       213 l~~~~~~~g~~~~A~~~~~~a~~  235 (258)
T 3uq3_A          213 KATAQIAVKEYASALETLDAART  235 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHH
Confidence            99999999999999999998873

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.63  E-value=1.5e-13  Score=120.84  Aligned_cols=177  Identities=10%  Similarity=-0.066  Sum_probs=142.6

Q ss_pred             cCChHHHHHHHHhcCc-------------------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036263          111 FGRMDLATVVFDVMRG-------------------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNV  171 (305)
Q Consensus       111 ~g~~~~a~~~~~~~~~-------------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~  171 (305)
                      .|++++|...|+++..                   ...+..+...+...|++++|...|++..+..  |+..++..+...
T Consensus       202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~  279 (514)
T 2gw1_A          202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALI  279 (514)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHH
Confidence            7888888888877644                   2346777888888899999999998887754  447778888888


Q ss_pred             hcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHH
Q 036263          172 CANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEAL  248 (305)
Q Consensus       172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~  248 (305)
                      +...|++++|...++.+.+.. +.+...+..+...|...|++++|...+++..+   .+...+..+...|...|++++|.
T Consensus       280 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  358 (514)
T 2gw1_A          280 MADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCE  358 (514)
T ss_dssp             HHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHH
Confidence            889999999999998888765 55677888888889999999999999888763   35678888888889999999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 036263          249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK  291 (305)
Q Consensus       249 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  291 (305)
                      ..++++.+.. +.+..++..+...+.+.|++++|...++.+.+
T Consensus       359 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  400 (514)
T 2gw1_A          359 TLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIE  400 (514)
T ss_dssp             HHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9999887753 23557788888888899999999999988873

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.61  E-value=8.9e-14  Score=113.64  Aligned_cols=214  Identities=12%  Similarity=0.061  Sum_probs=167.4

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 036263           46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMR  125 (305)
Q Consensus        46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  125 (305)
                      ...-.+.++|...|++++|+..++..    -.|                  +...+..+...+.+.|+.++|.+.++++.
T Consensus        35 e~~~~l~r~yi~~g~~~~al~~~~~~----~~~------------------~~~a~~~la~~~~~~~~~~~A~~~l~~ll   92 (291)
T 3mkr_A           35 ERDVFLYRAYLAQRKYGVVLDEIKPS----SAP------------------ELQAVRMFAEYLASHSRRDAIVAELDREM   92 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHSCTT----SCH------------------HHHHHHHHHHHHHCSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHhccc----CCh------------------hHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            34455678888888888888755431    122                  22334566677889999999999999863


Q ss_pred             c-------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChh
Q 036263          126 G-------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR  198 (305)
Q Consensus       126 ~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  198 (305)
                      .       ...+..+...+...|++++|++.+++      ..+...+..+...+.+.|++++|.+.++.+.+..  |+..
T Consensus        93 ~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~  164 (291)
T 3mkr_A           93 SRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDAT  164 (291)
T ss_dssp             HSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred             hcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcH
Confidence            2       33467777899999999999999987      4577889999999999999999999999998875  4432


Q ss_pred             H---HHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036263          199 V---CNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA  272 (305)
Q Consensus       199 ~---~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  272 (305)
                      .   ....+..+...|++++|..+|+++.+   .+...|+.+..++...|++++|...+++..+.. +-+..++..++..
T Consensus       165 ~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~  243 (291)
T 3mkr_A          165 LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVL  243 (291)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            1   12344555566899999999999974   477889999999999999999999999988853 3367888899999


Q ss_pred             HhccCcHHH-HHHHHHHHH
Q 036263          273 CSHAGLIED-GLQYFDIMK  290 (305)
Q Consensus       273 ~~~~g~~~~-a~~~~~~m~  290 (305)
                      +...|+.++ +.++++.+.
T Consensus       244 ~~~~g~~~eaa~~~~~~~~  262 (291)
T 3mkr_A          244 SQHLGKPPEVTNRYLSQLK  262 (291)
T ss_dssp             HHHTTCCHHHHHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHH
Confidence            999999876 678888877

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.60  E-value=2e-13  Score=119.96  Aligned_cols=224  Identities=8%  Similarity=-0.050  Sum_probs=189.8

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDV  123 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~  123 (305)
                      +...|..+...+...|++++|...|+++.+.  .|+..                  .+..+..++...|++++|...++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~~~~~------------------~~~~l~~~~~~~~~~~~A~~~~~~  295 (514)
T 2gw1_A          236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--FPRVN------------------SYIYMALIMADRNDSTEYYNYFDK  295 (514)
T ss_dssp             HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--CCCHH------------------HHHHHHHHHHTSSCCTTGGGHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CccHH------------------HHHHHHHHHHHCCCHHHHHHHHHH
Confidence            4667888899999999999999999999875  34422                  245566778899999999999988


Q ss_pred             cCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChh
Q 036263          124 MRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR  198 (305)
Q Consensus       124 ~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  198 (305)
                      +..     ...|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+.+.. +.+..
T Consensus       296 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~  373 (514)
T 2gw1_A          296 ALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPE  373 (514)
T ss_dssp             HHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSH
T ss_pred             HhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHH
Confidence            754     5568889999999999999999999988753 2256788899999999999999999999998875 55678


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhccc--C-c------hhhHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHH
Q 036263          199 VCNTLMDVYSRFGCIEFARQVFQRMHK--R-T------LVSWNSIIVGFAV---NGFVGEALEYFNLMQKGVFKTDEVSF  266 (305)
Q Consensus       199 ~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~------~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~  266 (305)
                      .+..+...|.+.|++++|...++++.+  | +      ...|..+...+..   .|++++|...+++..+.. +.+..++
T Consensus       374 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~  452 (514)
T 2gw1_A          374 VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAK  452 (514)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHH
Confidence            899999999999999999999998873  2 2      3388999999999   999999999999988853 3367788


Q ss_pred             HHHHHHHhccCcHHHHHHHHHHHH
Q 036263          267 TGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       267 ~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      ..+...+.+.|++++|...|+...
T Consensus       453 ~~la~~~~~~g~~~~A~~~~~~a~  476 (514)
T 2gw1_A          453 IGLAQMKLQQEDIDEAITLFEESA  476 (514)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHH
Confidence            899999999999999999999888

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.60  E-value=4.2e-13  Score=106.86  Aligned_cols=192  Identities=12%  Similarity=0.002  Sum_probs=114.0

Q ss_pred             hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 036263           45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM  124 (305)
Q Consensus        45 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~  124 (305)
                      ...|..+...+...|++++|.+.|+++.+.  .|+                 +...+..+...+.+.|++++|...++++
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~a   97 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPS-----------------SADAHAALAVVFQTEMEPKLADEEYRKA   97 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCC-----------------hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            577888888999999999999999988764  232                 1223445555566777777777777665


Q ss_pred             Cc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChh
Q 036263          125 RG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR  198 (305)
Q Consensus       125 ~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  198 (305)
                      ..     ...+..+...+...|++++|.+++++..+.+..| +...+..+...+...|++++|...+++..+.. +.+..
T Consensus        98 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~  176 (252)
T 2ho1_A           98 LASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPS  176 (252)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHH
T ss_pred             HHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHH
Confidence            32     3345555566666666666666666655422233 34445555555556666666666666555543 33455


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263          199 VCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQK  256 (305)
Q Consensus       199 ~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  256 (305)
                      .+..+...|...|++++|...++++.+   .+...+..+...+...|++++|.++++++.+
T Consensus       177 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~  237 (252)
T 2ho1_A          177 VALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR  237 (252)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            555555555555666665555555542   2334455555555555555555555555554

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.60  E-value=7.4e-13  Score=109.46  Aligned_cols=234  Identities=11%  Similarity=-0.073  Sum_probs=189.7

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCC-C----------------CChhHHHHHHH
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFP-S----------------NNVMVSTALLD  106 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~----------------~~~~~~~~ll~  106 (305)
                      +...+..+...+...|++++|...++++.+.. +.+...+..+-..+...+ +                .+...+..+..
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~  133 (330)
T 3hym_B           55 HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGH  133 (330)
T ss_dssp             CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHH
T ss_pred             ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence            45566777788889999999999999988742 234566666666666666 4                45678899999


Q ss_pred             HHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHH
Q 036263          107 MYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIG  181 (305)
Q Consensus       107 ~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a  181 (305)
                      .+...|++++|...|+++..     ...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus       134 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A  212 (330)
T 3hym_B          134 SFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTA  212 (330)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHH
Confidence            99999999999999998854     4567789999999999999999999987753 33678899999999999999999


Q ss_pred             HHHHHHHhhcC--------CCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHH
Q 036263          182 LWMHRYVPKQD--------FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEY  250 (305)
Q Consensus       182 ~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~  250 (305)
                      ...+++..+..        .+....++..+..+|.+.|++++|...+++..+   .+...|..+...|...|++++|.+.
T Consensus       213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  292 (330)
T 3hym_B          213 EKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDY  292 (330)
T ss_dssp             HHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHH
Confidence            99999987642        134467899999999999999999999999874   3678899999999999999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHH-hccCcHH
Q 036263          251 FNLMQKGVFKTDEVSFTGALTAC-SHAGLIE  280 (305)
Q Consensus       251 ~~~m~~~g~~p~~~~~~~li~~~-~~~g~~~  280 (305)
                      +++..+.. +.+...+..+..++ ...|+.+
T Consensus       293 ~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          293 FHTALGLR-RDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence            99988743 23667777777777 4556554

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.59  E-value=2.1e-13  Score=106.49  Aligned_cols=190  Identities=14%  Similarity=0.031  Sum_probs=152.3

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 036263           97 NVMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLN  170 (305)
Q Consensus        97 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~  170 (305)
                      +...+..+...+.+.|++++|...|++...     ...|..+...+.+.|++++|...+++..+.  .| +...+..+..
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~   81 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVLSE   81 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence            445667788889999999999999998854     556888999999999999999999998875  45 5778888888


Q ss_pred             HhcCc-----------CChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--CchhhHHHHHHH
Q 036263          171 VCANV-----------RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RTLVSWNSIIVG  237 (305)
Q Consensus       171 ~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~  237 (305)
                      .+...           |++++|...+++..+.. +-+...+..+..+|...|++++|...|++..+  .+...+..+..+
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~  160 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAEL  160 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Confidence            99999           99999999999999875 55688899999999999999999999998764  567788999999


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          238 FAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       238 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      |...|++++|...|++..+.. +-+...+..+...+.+.|++++|+..++...
T Consensus       161 ~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          161 YLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            999999999999999998853 3366788889999999999999999998765

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.59  E-value=4.5e-13  Score=106.71  Aligned_cols=191  Identities=14%  Similarity=-0.017  Sum_probs=165.1

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 036263           98 VMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVC  172 (305)
Q Consensus        98 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~  172 (305)
                      ...+..+...+...|++++|...|+++..     ...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~  115 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence            45567778889999999999999998754     4568889999999999999999999988753 33678888999999


Q ss_pred             cCcCChhHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHH
Q 036263          173 ANVRTLGIGLWMHRYVPKQDFKD-NVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEAL  248 (305)
Q Consensus       173 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~  248 (305)
                      ...|++++|...++.+.+.+..| +...+..+...|...|++++|...+++..+   .+...+..+...|...|++++|.
T Consensus       116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  195 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR  195 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999998833334 577888999999999999999999999874   35788999999999999999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          249 EYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       249 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      ..+++..+.. +.+...+..+...+.+.|++++|.++++.+.
T Consensus       196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~  236 (252)
T 2ho1_A          196 QYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLK  236 (252)
T ss_dssp             HHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            9999988753 3567788888899999999999999999998

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.58  E-value=1.6e-15  Score=127.95  Aligned_cols=184  Identities=11%  Similarity=0.038  Sum_probs=67.3

Q ss_pred             hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCccccHHHHHHH
Q 036263           57 RSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNG  136 (305)
Q Consensus        57 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~li~~  136 (305)
                      +.|++++|.++++++..    |                    .+|..|..++.+.|++++|++.|.+.++...|..++.+
T Consensus        15 ~~~~ld~A~~fae~~~~----~--------------------~vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~~   70 (449)
T 1b89_A           15 HIGNLDRAYEFAERCNE----P--------------------AVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQA   70 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCCC----h--------------------HHHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHH
Confidence            56779999999988732    1                    24567777799999999999999999888899999999


Q ss_pred             HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHH
Q 036263          137 FVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFA  216 (305)
Q Consensus       137 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  216 (305)
                      +...|++++|..+++..++.  .++..+.+.++.+|.+.|+++++.++++       .|+..+|..+...|...|++++|
T Consensus        71 ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA  141 (449)
T 1b89_A           71 ANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAA  141 (449)
T ss_dssp             ----------------------------------------CHHHHTTTTT-------CC----------------CTTTH
T ss_pred             HHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHH
Confidence            99999999999988776663  5567889999999999999999998874       36778999999999999999999


Q ss_pred             HHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 036263          217 RQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQ  284 (305)
Q Consensus       217 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~  284 (305)
                      ...|..+     ..|..+..++.+.|++++|.+.++++      .+..+|..++.+|...|+++.|..
T Consensus       142 ~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~  198 (449)
T 1b89_A          142 KLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQM  198 (449)
T ss_dssp             HHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHH
Confidence            9999988     48999999999999999999999998      378999999999999999999864

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.58  E-value=2.7e-12  Score=113.51  Aligned_cols=160  Identities=11%  Similarity=0.012  Sum_probs=139.0

Q ss_pred             cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 036263          129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS  208 (305)
Q Consensus       129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  208 (305)
                      ++..+...+...|++++|...+++..+.  .|+..++..+...+...|++++|...++.+.+.. +.+..++..+...|.
T Consensus       245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~  321 (537)
T 3fp2_A          245 ALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYF  321 (537)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHH
Confidence            3566667788899999999999998875  5668888999999999999999999999998875 567888999999999


Q ss_pred             hcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 036263          209 RFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQY  285 (305)
Q Consensus       209 ~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~  285 (305)
                      ..|++++|...+++..+   .+...|..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus       322 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~  400 (537)
T 3fp2_A          322 ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQ  400 (537)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence            99999999999999874   356789999999999999999999999998863 33567888899999999999999999


Q ss_pred             HHHHHHH
Q 036263          286 FDIMKKI  292 (305)
Q Consensus       286 ~~~m~~~  292 (305)
                      ++.+.+.
T Consensus       401 ~~~a~~~  407 (537)
T 3fp2_A          401 YDIAKRL  407 (537)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            9998743

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.58  E-value=9.2e-13  Score=102.68  Aligned_cols=192  Identities=11%  Similarity=-0.024  Sum_probs=163.7

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 036263           98 VMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVC  172 (305)
Q Consensus        98 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~  172 (305)
                      ...+..+...+...|++++|...|+.+..     ...|..+...+...|++++|...+++..+.. +.+..++..+...+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~   86 (225)
T 2vq2_A            8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL   86 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence            34567778889999999999999998754     4568889999999999999999999987753 33677889999999


Q ss_pred             cCc-CChhHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHH
Q 036263          173 ANV-RTLGIGLWMHRYVPKQDFKD-NVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEA  247 (305)
Q Consensus       173 ~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a  247 (305)
                      ... |++++|...++.+.+.+..| +...+..+..++...|++++|...++++.+   .+...+..+...+...|++++|
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  166 (225)
T 2vq2_A           87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDA  166 (225)
T ss_dssp             HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHH
Confidence            999 99999999999998833333 367889999999999999999999999874   3577889999999999999999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          248 LEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       248 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      ...+++..+.....+...+..+...+...|+.+.+..+++.+.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  209 (225)
T 2vq2_A          167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ  209 (225)
T ss_dssp             HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            9999998875321467778888888899999999999999987

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.58  E-value=1.2e-12  Score=102.13  Aligned_cols=205  Identities=13%  Similarity=0.009  Sum_probs=169.3

Q ss_pred             CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 036263           43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFD  122 (305)
Q Consensus        43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~  122 (305)
                      .+...|..+...+...|++++|.+.|+++.+.  .|+                 +...+..+...+...|++++|...++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~   66 (225)
T 2vq2_A            6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKS--DPK-----------------NELAWLVRAEIYQYLKVNDKAQESFR   66 (225)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--Ccc-----------------chHHHHHHHHHHHHcCChHHHHHHHH
Confidence            35678889999999999999999999998874  333                 12345666777899999999999999


Q ss_pred             hcCc-----cccHHHHHHHHHcC-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCC
Q 036263          123 VMRG-----CDFWTALLNGFVKR-DYFEEALEYFRVMQISGVEPD-YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD  195 (305)
Q Consensus       123 ~~~~-----~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  195 (305)
                      ++..     ..++..+...+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.
T Consensus        67 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~  145 (225)
T 2vq2_A           67 QALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQ  145 (225)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT
T ss_pred             HHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence            8844     45688899999999 999999999999987433443 6778889999999999999999999998875 55


Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhccc----CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036263          196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHK----RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGA  269 (305)
Q Consensus       196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l  269 (305)
                      +...+..+...|.+.|++++|...+++..+    .+...+..+...+...|+.+.|..+++.+.+.  .|+......+
T Consensus       146 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~  221 (225)
T 2vq2_A          146 FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQTV  221 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred             CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence            688899999999999999999999998863    46677888888899999999999999998864  3555444333

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.57  E-value=1.5e-13  Score=115.67  Aligned_cols=231  Identities=13%  Similarity=-0.000  Sum_probs=160.0

Q ss_pred             HHhcCChhHHHH-HHHHHHhCCCCC-----CHhhHHHHHHhhcCCCC----------------CChhHHHHHHHHHHhcC
Q 036263           55 HCRSGCILEAAL-EFTRMRLYGTNP-----SHITFVTLLSGCADFPS----------------NNVMVSTALLDMYAKFG  112 (305)
Q Consensus        55 ~~~~~~~~~a~~-~~~~m~~~g~~p-----~~~~~~~ll~~~~~~~~----------------~~~~~~~~ll~~~~~~g  112 (305)
                      +...|++++|++ .|++....  .|     +...+..+-..+...++                .+...+..+..++.+.|
T Consensus        35 ~~~~~~~~~a~~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  112 (368)
T 1fch_A           35 HPWLSDYDDLTSATYDKGYQF--EEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE  112 (368)
T ss_dssp             -----------CHHHHCCCCC--CSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHhhhhhHHHhc--CCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc
Confidence            334578888887 77765542  22     23344445555555555                44556777777777777


Q ss_pred             ChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH-HHHHH---------------HHHH
Q 036263          113 RMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDY-LTIIS---------------VLNV  171 (305)
Q Consensus       113 ~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~---------------ll~~  171 (305)
                      ++++|...|+++..     ..++..+...+...|++++|...++++.+..  |+. ..+..               .+..
T Consensus       113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (368)
T 1fch_A          113 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGS  190 (368)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHH
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence            77777777776643     4457777777777788888887777776642  221 11110               1223


Q ss_pred             hcCcCChhHHHHHHHHHhhcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHH
Q 036263          172 CANVRTLGIGLWMHRYVPKQDFKD--NVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGE  246 (305)
Q Consensus       172 ~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~  246 (305)
                      +...|++++|...++.+.+.. +.  +..++..+...|.+.|++++|...|+++.+   .+..+|..+...+...|++++
T Consensus       191 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~  269 (368)
T 1fch_A          191 LLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEE  269 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHH
Confidence            336777788888888777764 22  578899999999999999999999999874   356789999999999999999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 036263          247 ALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK  291 (305)
Q Consensus       247 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  291 (305)
                      |...++++.+.. +.+...+..+..++.+.|++++|...|+...+
T Consensus       270 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  313 (368)
T 1fch_A          270 AVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALN  313 (368)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            999999988853 34678899999999999999999999998873

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.56  E-value=3e-13  Score=113.89  Aligned_cols=192  Identities=9%  Similarity=-0.004  Sum_probs=156.3

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036263           97 NVMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNV  171 (305)
Q Consensus        97 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~  171 (305)
                      +...+..+...+.+.|++++|...|+++..     ..+|..+...+...|++++|...|++..+.. +.+..++..+...
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~  142 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS  142 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            445577888889999999999999999854     5679999999999999999999999988753 3358889999999


Q ss_pred             hcCcCChhHHHHHHHHHhhcCCC---------CChhHHHHHHHHHHhcCChHHHHHHHHhccc--C---chhhHHHHHHH
Q 036263          172 CANVRTLGIGLWMHRYVPKQDFK---------DNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R---TLVSWNSIIVG  237 (305)
Q Consensus       172 ~~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~---~~~~~~~li~~  237 (305)
                      +...|++++|...++++.+....         .....+..+...+.+.|++++|...|+++.+  |   +..++..+...
T Consensus       143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  222 (365)
T 4eqf_A          143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL  222 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred             HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence            99999999999999999875310         1244567888999999999999999999974  3   57889999999


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          238 FAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       238 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      |...|++++|.+.|++..+.. +.+..++..+..++.+.|++++|+..|+...
T Consensus       223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  274 (365)
T 4eqf_A          223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRAL  274 (365)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999999999999998853 3467899999999999999999999999988

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.55  E-value=4e-13  Score=104.92  Aligned_cols=190  Identities=15%  Similarity=0.058  Sum_probs=151.0

Q ss_pred             CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 036263           43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFD  122 (305)
Q Consensus        43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~  122 (305)
                      ++...|..+-..+.+.|++++|+..|++..+  ..|+                 +...+..+..++.+.|++++|...|+
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~-----------------~~~a~~~lg~~~~~~g~~~~A~~~~~   63 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERALK--ENPQ-----------------DPEALYWLARTQLKLGLVNPALENGK   63 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSS-----------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            5677888889999999999999999999987  4554                 23445667777899999999999999


Q ss_pred             hcCc-----cccHHHHHHHHHcC-----------CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHH
Q 036263          123 VMRG-----CDFWTALLNGFVKR-----------DYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMH  185 (305)
Q Consensus       123 ~~~~-----~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~  185 (305)
                      +...     ...+..+...+...           |++++|...|++..+.  .| +...+..+-..+...|++++|...+
T Consensus        64 ~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~  141 (217)
T 2pl2_A           64 TLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASL  141 (217)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHH
Confidence            8854     45688888999999           9999999999998875  55 5778888999999999999999999


Q ss_pred             HHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036263          186 RYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQ  255 (305)
Q Consensus       186 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~  255 (305)
                      ++..+..  .+...+..+..+|...|++++|...|++..+  | +...+..+...+...|++++|...+++..
T Consensus       142 ~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          142 KQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            9999987  7888999999999999999999999999874  3 66788899999999999999999988754

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.54  E-value=2.5e-13  Score=107.41  Aligned_cols=192  Identities=15%  Similarity=0.076  Sum_probs=150.2

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036263           96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLN  170 (305)
Q Consensus        96 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~  170 (305)
                      .....+..+...+.+.|++++|...|+++..     ...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~   99 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN   99 (243)
T ss_dssp             ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence            3455667777788899999999999998844     4568888899999999999999999987753 336788889999


Q ss_pred             HhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHH
Q 036263          171 VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEA  247 (305)
Q Consensus       171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a  247 (305)
                      .+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...++++.+   .+...+..+...+...|++++|
T Consensus       100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  178 (243)
T 2q7f_A          100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA  178 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999998875 56788899999999999999999999999874   3677889999999999999999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          248 LEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       248 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      ...+++..+.. +.+..++..+..++.+.|++++|...++.+.
T Consensus       179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  220 (243)
T 2q7f_A          179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAI  220 (243)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            99999988763 3467889999999999999999999999988

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.54  E-value=2e-12  Score=104.04  Aligned_cols=224  Identities=8%  Similarity=-0.062  Sum_probs=178.7

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 036263           46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMR  125 (305)
Q Consensus        46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  125 (305)
                      ..+......+...|++++|+..|++..+.  .|+.                 ...+..+..++.+.|++++|...+++..
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~-----------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~   64 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK--KYNS-----------------PYIYNRRAVCYYELAKYDLAQKDIETYF   64 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHT--TCCC-----------------STTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCc-----------------HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            34556677888999999999999999874  3432                 2234566667899999999999999885


Q ss_pred             c----cc----cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCCh
Q 036263          126 G----CD----FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNV  197 (305)
Q Consensus       126 ~----~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  197 (305)
                      .    ..    .|..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...+++..+.. +.+.
T Consensus        65 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~  142 (272)
T 3u4t_A           65 SKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDP  142 (272)
T ss_dssp             TTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCH
T ss_pred             hccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcH
Confidence            4    22    27889999999999999999999988753 2356789999999999999999999999998874 5567


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCC---hHHHHHHHHHHHHCC-CCCC------HH
Q 036263          198 RVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGF---VGEALEYFNLMQKGV-FKTD------EV  264 (305)
Q Consensus       198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g-~~p~------~~  264 (305)
                      ..+..+...+...+++++|.+.|++..+  | +...+..+...+...|+   +++|...+++..+.. -.|+      ..
T Consensus       143 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  222 (272)
T 3u4t_A          143 KVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIE  222 (272)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHH
Confidence            7788877344445699999999999874  3 46777788888888888   888999998876642 1233      25


Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          265 SFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       265 ~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      +|..+...+.+.|++++|.+.++...
T Consensus       223 ~~~~l~~~~~~~~~~~~A~~~~~~al  248 (272)
T 3u4t_A          223 ANEYIAYYYTINRDKVKADAAWKNIL  248 (272)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            77788889999999999999999988

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.54  E-value=1.9e-11  Score=98.62  Aligned_cols=217  Identities=9%  Similarity=-0.034  Sum_probs=183.4

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHh----cCChHHHHH
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAK----FGRMDLATV  119 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~  119 (305)
                      +..++..+-..+...|++++|++.|++..+.+   +                  ...+..+...+..    .+++++|..
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~------------------~~a~~~lg~~~~~g~~~~~~~~~A~~   63 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---E------------------NSGCFNLGVLYYQGQGVEKNLKKAAS   63 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---C------------------HHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---C------------------HHHHHHHHHHHHcCCCcCCCHHHHHH
Confidence            56678888889999999999999999998722   1                  1233556666788    999999999


Q ss_pred             HHHhcCc---cccHHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC----cCChhHHHHHHHHH
Q 036263          120 VFDVMRG---CDFWTALLNGFVK----RDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN----VRTLGIGLWMHRYV  188 (305)
Q Consensus       120 ~~~~~~~---~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~  188 (305)
                      .|++..+   ...+..+...+..    .+++++|...|++..+.+   +...+..+-..|..    .+++++|...+++.
T Consensus        64 ~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a  140 (273)
T 1ouv_A           64 FYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKA  140 (273)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence            9998755   5567888889999    999999999999988765   66778888888888    99999999999999


Q ss_pred             hhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhccc-CchhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCC
Q 036263          189 PKQDFKDNVRVCNTLMDVYSR----FGCIEFARQVFQRMHK-RTLVSWNSIIVGFAV----NGFVGEALEYFNLMQKGVF  259 (305)
Q Consensus       189 ~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~  259 (305)
                      .+.+   +...+..+...|..    .+++++|...|++..+ .+...+..+...|..    .+++++|...|++..+.+ 
T Consensus       141 ~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-  216 (273)
T 1ouv_A          141 CDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-  216 (273)
T ss_dssp             HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-
T ss_pred             HhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-
Confidence            9876   56778888888888    9999999999999875 466788888999999    999999999999998865 


Q ss_pred             CCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHH
Q 036263          260 KTDEVSFTGALTACSH----AGLIEDGLQYFDIMK  290 (305)
Q Consensus       260 ~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~  290 (305)
                        +...+..+...+.+    .+++++|.+.|+...
T Consensus       217 --~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~  249 (273)
T 1ouv_A          217 --NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGC  249 (273)
T ss_dssp             --CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence              26677778888888    899999999999887

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.53  E-value=2.1e-12  Score=114.24  Aligned_cols=222  Identities=9%  Similarity=-0.024  Sum_probs=182.7

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 036263           46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMR  125 (305)
Q Consensus        46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  125 (305)
                      .+|..+...+...|++++|...|++..+.  .|+...                  +..+...+.+.|++++|...|+.+.
T Consensus       244 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~------------------~~~l~~~~~~~~~~~~A~~~~~~~~  303 (537)
T 3fp2_A          244 LALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNS------------------YIFLALTLADKENSQEFFKFFQKAV  303 (537)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHH------------------HHHHHHHTCCSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchH------------------HHHHHHHHHHhcCHHHHHHHHHHHh
Confidence            35777778888999999999999999874  455333                  3445566788899999999998874


Q ss_pred             c-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHH
Q 036263          126 G-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC  200 (305)
Q Consensus       126 ~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  200 (305)
                      .     ..+|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+
T Consensus       304 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~  381 (537)
T 3fp2_A          304 DLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVP  381 (537)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHH
T ss_pred             ccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence            4     5668889999999999999999999988753 2246788889999999999999999999998875 5667889


Q ss_pred             HHHHHHHHhcCChHHHHHHHHhcccC---------chhhHHHHHHHHHhc----------CChHHHHHHHHHHHHCCCCC
Q 036263          201 NTLMDVYSRFGCIEFARQVFQRMHKR---------TLVSWNSIIVGFAVN----------GFVGEALEYFNLMQKGVFKT  261 (305)
Q Consensus       201 ~~li~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~g~~p  261 (305)
                      ..+...|...|++++|...|+++.+.         ....+......+...          |++++|...|++..+.. +.
T Consensus       382 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~  460 (537)
T 3fp2_A          382 TFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PR  460 (537)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CC
Confidence            99999999999999999999998631         222344555677777          99999999999998853 34


Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          262 DEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       262 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      +...+..+...+.+.|++++|.+.|+...
T Consensus       461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al  489 (537)
T 3fp2_A          461 SEQAKIGLAQLKLQMEKIDEAIELFEDSA  489 (537)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            66888899999999999999999999887

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.53  E-value=1.5e-12  Score=104.84  Aligned_cols=216  Identities=11%  Similarity=-0.068  Sum_probs=163.8

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDV  123 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~  123 (305)
                      +...|..+...+...|++++|...|+++.+.  .|+                 +...+..+..++.+.|++++|...|++
T Consensus        42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~-----------------~~~~~~~la~~~~~~~~~~~A~~~~~~  102 (275)
T 1xnf_A           42 RAQLLYERGVLYDSLGLRALARNDFSQALAI--RPD-----------------MPEVFNYLGIYLTQAGNFDAAYEAFDS  102 (275)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCC-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCC-----------------cHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            5678888899999999999999999998874  332                 234456677778999999999999988


Q ss_pred             cCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChh
Q 036263          124 MRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR  198 (305)
Q Consensus       124 ~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  198 (305)
                      +..     ...+..+...+...|++++|...|+++.+.  .|+.......+..+...|++++|...++...... +++..
T Consensus       103 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~  179 (275)
T 1xnf_A          103 VLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQW  179 (275)
T ss_dssp             HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCST
T ss_pred             HHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchH
Confidence            854     566888899999999999999999998774  4554455555556677799999999998877764 44444


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhcccC-------chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036263          199 VCNTLMDVYSRFGCIEFARQVFQRMHKR-------TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT  271 (305)
Q Consensus       199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~  271 (305)
                      .+. ++..+...++.++|...+++..+.       +...|..+...|...|++++|...|++..+.  .|+.  +.....
T Consensus       180 ~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~  254 (275)
T 1xnf_A          180 GWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRY  254 (275)
T ss_dssp             HHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHH
T ss_pred             HHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHH
Confidence            444 677777888889999999887743       2477888899999999999999999998875  3532  223355


Q ss_pred             HHhccCcHHHHHHHH
Q 036263          272 ACSHAGLIEDGLQYF  286 (305)
Q Consensus       272 ~~~~~g~~~~a~~~~  286 (305)
                      ++...|++++|++.+
T Consensus       255 ~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          255 ALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHHC----
T ss_pred             HHHHHHHHHhhHHHH
Confidence            667778888887765

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.52  E-value=9.5e-13  Score=104.01  Aligned_cols=196  Identities=13%  Similarity=0.097  Sum_probs=148.3

Q ss_pred             CCCchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 036263           41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVV  120 (305)
Q Consensus        41 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~  120 (305)
                      +..+...|..+...+...|++++|...|+++.+.  .|+                 +...+..+...+.+.|++++|...
T Consensus        19 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~-----------------~~~~~~~la~~~~~~~~~~~A~~~   79 (243)
T 2q7f_A           19 SHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKE-----------------DAIPYINFANLLSSVNELERALAF   79 (243)
T ss_dssp             -----------------------CCTTHHHHHTT--CTT-----------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--Ccc-----------------cHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3446778888889999999999999999999873  343                 233456667778999999999999


Q ss_pred             HHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCC
Q 036263          121 FDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD  195 (305)
Q Consensus       121 ~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  195 (305)
                      ++++..     ...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...++++.+.. +.
T Consensus        80 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~  157 (243)
T 2q7f_A           80 YDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-EN  157 (243)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TT
T ss_pred             HHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-Cc
Confidence            998754     4568888999999999999999999988763 3467788899999999999999999999998875 56


Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263          196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG  257 (305)
Q Consensus       196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  257 (305)
                      +...+..+...|.+.|++++|...+++..+   .+..++..+...|...|++++|.+.++++.+.
T Consensus       158 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          158 DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            788899999999999999999999999874   35778999999999999999999999999885

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.52  E-value=2.3e-12  Score=108.97  Aligned_cols=229  Identities=13%  Similarity=-0.006  Sum_probs=188.3

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCC-hHHHHHHHH
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGR-MDLATVVFD  122 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~  122 (305)
                      +...|+.+-..+.+.|++++|++.|++..+  +.|+.                 ...|+.+..++.+.|+ +++|+..|+
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~--l~P~~-----------------~~a~~~~g~~l~~~g~d~~eAl~~~~  156 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIE--LNAAN-----------------YTVWHFRRVLLKSLQKDLHEEMNYIT  156 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHH--HCTTC-----------------HHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHH--hCccC-----------------HHHHHHHHHHHHHcccCHHHHHHHHH
Confidence            456788888999999999999999999987  45653                 3345667777889997 999999999


Q ss_pred             hcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC
Q 036263          123 VMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN  196 (305)
Q Consensus       123 ~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  196 (305)
                      ++..     ...|+.+..++...|++++|+..|++..+.  .| +...|..+..++...|++++|...++++++.. +-+
T Consensus       157 ~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~  233 (382)
T 2h6f_A          157 AIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRN  233 (382)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTC
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCC
Confidence            9855     567999999999999999999999999875  45 68889999999999999999999999999986 567


Q ss_pred             hhHHHHHHHHHHh-cCChHHH-----HHHHHhccc--C-chhhHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHH
Q 036263          197 VRVCNTLMDVYSR-FGCIEFA-----RQVFQRMHK--R-TLVSWNSIIVGFAVNG--FVGEALEYFNLMQKGVFKTDEVS  265 (305)
Q Consensus       197 ~~~~~~li~~~~~-~g~~~~a-----~~~~~~~~~--~-~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~  265 (305)
                      ...|+.+..++.+ .|..++|     ...|++...  | +...|+.+...+...|  ++++|.+.+.++ +. -+.+...
T Consensus       234 ~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~a  311 (382)
T 2h6f_A          234 NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYL  311 (382)
T ss_dssp             HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHH
T ss_pred             HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHH
Confidence            8899999999999 6665777     477777763  3 6678988888898888  689999999988 32 3446688


Q ss_pred             HHHHHHHHhccC---------cHHHHHHHHHHH-HHHhCCCCCc
Q 036263          266 FTGALTACSHAG---------LIEDGLQYFDIM-KKIYRVSPQI  299 (305)
Q Consensus       266 ~~~li~~~~~~g---------~~~~a~~~~~~m-~~~~~~~p~~  299 (305)
                      +..+...+.+.|         .+++|.++++.+ .   .+.|..
T Consensus       312 l~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~---~~DP~r  352 (382)
T 2h6f_A          312 IAFLVDIYEDMLENQCDNKEDILNKALELCEILAK---EKDTIR  352 (382)
T ss_dssp             HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH---TTCGGG
T ss_pred             HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH---HhCchh
Confidence            888888988864         368999999988 5   444543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.49  E-value=2.7e-12  Score=103.37  Aligned_cols=221  Identities=9%  Similarity=-0.111  Sum_probs=171.9

Q ss_pred             hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHH
Q 036263           57 RSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWT  131 (305)
Q Consensus        57 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~  131 (305)
                      ..|++++|+..|+++.+.+...+..               +..++..+...+...|++++|...|+++..     ...|.
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~   81 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDE---------------RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFN   81 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHH---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCch---------------hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHH
Confidence            3578999999999998863221111               234456777889999999999999998854     56788


Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC
Q 036263          132 ALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG  211 (305)
Q Consensus       132 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  211 (305)
                      .+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...++.+.+..  |+.......+..+...|
T Consensus        82 ~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~  158 (275)
T 1xnf_A           82 YLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKL  158 (275)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhc
Confidence            99999999999999999999988753 2357788999999999999999999999998864  44444445555667779


Q ss_pred             ChHHHHHHHHhccc--CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHhccCcHHHHHHHH
Q 036263          212 CIEFARQVFQRMHK--RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK--T-DEVSFTGALTACSHAGLIEDGLQYF  286 (305)
Q Consensus       212 ~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p-~~~~~~~li~~~~~~g~~~~a~~~~  286 (305)
                      ++++|...+++...  |+......++..+...++.++|...+++..+....  | +...+..+...+.+.|++++|...|
T Consensus       159 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  238 (275)
T 1xnf_A          159 DEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALF  238 (275)
T ss_dssp             CHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999977763  33233334777788889999999999988764311  1 2578888999999999999999999


Q ss_pred             HHHHHHhCCCCC
Q 036263          287 DIMKKIYRVSPQ  298 (305)
Q Consensus       287 ~~m~~~~~~~p~  298 (305)
                      +...   ...|+
T Consensus       239 ~~al---~~~p~  247 (275)
T 1xnf_A          239 KLAV---ANNVH  247 (275)
T ss_dssp             HHHH---TTCCT
T ss_pred             HHHH---hCCch
Confidence            9988   44453

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.47  E-value=5.4e-12  Score=104.11  Aligned_cols=192  Identities=14%  Similarity=0.031  Sum_probs=159.0

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH-HHHHHH-
Q 036263           96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDY-LTIISV-  168 (305)
Q Consensus        96 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~l-  168 (305)
                      .+...+..+..++.+.|++++|...++++..     ...+..+...+...|++++|.+.+++..+.  .|+. ..+..+ 
T Consensus        53 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~  130 (327)
T 3cv0_A           53 EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS--QPQYEQLGSVNL  130 (327)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTTTC-----
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHh
Confidence            4667888899999999999999999998754     456888889999999999999999998765  3322 222222 


Q ss_pred             -------------HH-HhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhH
Q 036263          169 -------------LN-VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSW  231 (305)
Q Consensus       169 -------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~  231 (305)
                                   .. .+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.++++.+   .+...|
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  209 (327)
T 3cv0_A          131 QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLW  209 (327)
T ss_dssp             ---------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence                         22 3788899999999999998875 55788999999999999999999999999874   356789


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 036263          232 NSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK  291 (305)
Q Consensus       232 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  291 (305)
                      ..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|.+.++...+
T Consensus       210 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  268 (327)
T 3cv0_A          210 NKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY  268 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            999999999999999999999988853 34678899999999999999999999998873

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.44  E-value=2e-10  Score=94.48  Aligned_cols=233  Identities=11%  Similarity=-0.010  Sum_probs=173.4

Q ss_pred             chHhHHHHHHHHHhc----CCh----hHHHHHHHHHHhCCCCC-CHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCCh
Q 036263           44 TTVQWTSSISRHCRS----GCI----LEAALEFTRMRLYGTNP-SHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRM  114 (305)
Q Consensus        44 ~~~~~~~li~~~~~~----~~~----~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~  114 (305)
                      +...|...+....+.    ++.    ++|..+|++....  .| +...|......+.           .....+.+.|++
T Consensus         7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~--~p~~~~~w~~~~~~~~-----------~~~~~l~~~g~~   73 (308)
T 2ond_A            7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLE-----------QSSKLLAEKGDM   73 (308)
T ss_dssp             HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHH-----------HHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHH-----------Hhchhhhhccch
Confidence            345666666665443    233    6788889888774  33 3333333222210           000011246886


Q ss_pred             -------HHHHHHHHhcCc------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHhcCcCChh
Q 036263          115 -------DLATVVFDVMRG------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD-YL-TIISVLNVCANVRTLG  179 (305)
Q Consensus       115 -------~~a~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~-t~~~ll~~~~~~~~~~  179 (305)
                             ++|..+|++...      ...|..++..+.+.|++++|.++|++..+  +.|+ .. .|..+...+.+.|+++
T Consensus        74 ~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~  151 (308)
T 2ond_A           74 NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIK  151 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHH
T ss_pred             hhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHH
Confidence                   899999998754      23588999999999999999999999887  4564 33 7899999999999999


Q ss_pred             HHHHHHHHHhhcCCCCChhHHHHHHHHHH-hcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036263          180 IGLWMHRYVPKQDFKDNVRVCNTLMDVYS-RFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQ  255 (305)
Q Consensus       180 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~  255 (305)
                      +|..+|++..+.. +.+...|........ ..|+.++|..+|++..+  | +...|..++..+.+.|++++|..+|++..
T Consensus       152 ~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al  230 (308)
T 2ond_A          152 SGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVL  230 (308)
T ss_dssp             HHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            9999999999875 455666654444422 37999999999999874  3 67889999999999999999999999999


Q ss_pred             HCC-CCC--CHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Q 036263          256 KGV-FKT--DEVSFTGALTACSHAGLIEDGLQYFDIMKKI  292 (305)
Q Consensus       256 ~~g-~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  292 (305)
                      ... +.|  +...|..++....+.|+.+.|..+++.+.+.
T Consensus       231 ~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~  270 (308)
T 2ond_A          231 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             HSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            863 465  4568888888889999999999999998833

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.43  E-value=2.9e-12  Score=104.92  Aligned_cols=232  Identities=11%  Similarity=0.009  Sum_probs=165.6

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGT---NPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVV  120 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~  120 (305)
                      +..+|..+...+...|++++|...|+++.+...   .++..              .....+..+...+...|++++|...
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~la~~~~~~g~~~~A~~~   91 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHP--------------DVATMLNILALVYRDQNKYKDAANL   91 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSH--------------HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCH--------------HHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            567889999999999999999999999876310   00110              1123456777889999999999999


Q ss_pred             HHhcCc-------------cccHHHHHHHHHcCCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHhcCcCChhH
Q 036263          121 FDVMRG-------------CDFWTALLNGFVKRDYFEEALEYFRVMQIS------GVEP-DYLTIISVLNVCANVRTLGI  180 (305)
Q Consensus       121 ~~~~~~-------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~~~~~~  180 (305)
                      +++...             ...+..+...+...|++++|...+++..+.      +-.| ....+..+...+...|++++
T Consensus        92 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  171 (311)
T 3nf1_A           92 LNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEE  171 (311)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHH
Confidence            987743             345788889999999999999999988654      2233 35668888889999999999


Q ss_pred             HHHHHHHHhhc------CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhcccC------------------chhhHHHHH
Q 036263          181 GLWMHRYVPKQ------DFKD-NVRVCNTLMDVYSRFGCIEFARQVFQRMHKR------------------TLVSWNSII  235 (305)
Q Consensus       181 a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------------------~~~~~~~li  235 (305)
                      |...+++..+.      +..| ...++..+...|...|++++|.+.++++.+.                  ....+..+.
T Consensus       172 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (311)
T 3nf1_A          172 VEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECK  251 (311)
T ss_dssp             HHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhc
Confidence            99999988764      2122 3567888999999999999999999988731                  122333344


Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          236 VGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       236 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      ..+...+.+.++...++...... +.+..++..+..+|.+.|++++|.++++...
T Consensus       252 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  305 (311)
T 3nf1_A          252 GKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAM  305 (311)
T ss_dssp             ------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            44556667777777777766532 2345778889999999999999999999887

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.43  E-value=2.8e-11  Score=91.58  Aligned_cols=157  Identities=11%  Similarity=0.075  Sum_probs=73.5

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 036263          130 WTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS  208 (305)
Q Consensus       130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  208 (305)
                      |..+...+.+.|++++|++.|++..+.  .| +..++..+...+...|++++|...++...... +.+...+..+...+.
T Consensus         8 y~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~   84 (184)
T 3vtx_A            8 YMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANF   84 (184)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHH
Confidence            444444444444444444444444332  22 34444444444555555555555555444443 233444444444455


Q ss_pred             hcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 036263          209 RFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQY  285 (305)
Q Consensus       209 ~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~  285 (305)
                      ..++++.|...+++..+   .+...+..+...|...|++++|.+.|++..+.. +-+..++..+..++.+.|++++|++.
T Consensus        85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~  163 (184)
T 3vtx_A           85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKY  163 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHH
Confidence            55555555555544432   233444444555555555555555555544432 12334444555555555555555555


Q ss_pred             HHHHH
Q 036263          286 FDIMK  290 (305)
Q Consensus       286 ~~~m~  290 (305)
                      |++..
T Consensus       164 ~~~al  168 (184)
T 3vtx_A          164 FKKAL  168 (184)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55444

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.41  E-value=1.4e-11  Score=104.80  Aligned_cols=246  Identities=12%  Similarity=0.052  Sum_probs=171.4

Q ss_pred             CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-----HhhHHHHHHhhcCCCC----------------------
Q 036263           43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPS-----HITFVTLLSGCADFPS----------------------   95 (305)
Q Consensus        43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~----------------------   95 (305)
                      +....+...-..+...|++++|+..|++..+.  .|+     ...+..+-..+...++                      
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   84 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL   84 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence            34555556666777777777777777777664  232     2344444444444554                      


Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHhcCc-----------cccHHHHHHHHHcCCC--------------------hH
Q 036263           96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRG-----------CDFWTALLNGFVKRDY--------------------FE  144 (305)
Q Consensus        96 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~li~~~~~~g~--------------------~~  144 (305)
                      ....++..+...+...|++++|...+++...           ..++..+...+...|+                    ++
T Consensus        85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~  164 (406)
T 3sf4_A           85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ  164 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence            1134566777788888999988888877644           2367778888888888                    88


Q ss_pred             HHHHHHHHHHHc----CCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCC-CC----ChhHHHHHHHHHHhcCChH
Q 036263          145 EALEYFRVMQIS----GVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF-KD----NVRVCNTLMDVYSRFGCIE  214 (305)
Q Consensus       145 ~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~li~~~~~~g~~~  214 (305)
                      +|...+++..+.    +-.| ...++..+...+...|++++|...+++..+... .+    ...++..+...|...|+++
T Consensus       165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  244 (406)
T 3sf4_A          165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE  244 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence            888888765432    1112 245677778888888999999988888765310 11    1347788888899999999


Q ss_pred             HHHHHHHhccc-----C----chhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCcHH
Q 036263          215 FARQVFQRMHK-----R----TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG----VFKT-DEVSFTGALTACSHAGLIE  280 (305)
Q Consensus       215 ~a~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~  280 (305)
                      +|...+++..+     +    ...++..+...|...|++++|...+++..+.    +-.+ ...++..+...+...|+++
T Consensus       245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  324 (406)
T 3sf4_A          245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD  324 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            99998888763     1    1457788888899999999999998887653    1111 1456777888888999999


Q ss_pred             HHHHHHHHHH
Q 036263          281 DGLQYFDIMK  290 (305)
Q Consensus       281 ~a~~~~~~m~  290 (305)
                      +|...++...
T Consensus       325 ~A~~~~~~al  334 (406)
T 3sf4_A          325 QAMHFAEKHL  334 (406)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988766

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.39  E-value=4.3e-11  Score=90.52  Aligned_cols=164  Identities=12%  Similarity=0.098  Sum_probs=143.0

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036263           97 NVMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNV  171 (305)
Q Consensus        97 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~  171 (305)
                      +..+|..+...+.+.|++++|...|++..+     ...|..+...+.+.|++++|...+....... +-+...+..+...
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~   82 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA   82 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence            567899999999999999999999999854     5668899999999999999999999987753 2356677778888


Q ss_pred             hcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHH
Q 036263          172 CANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEAL  248 (305)
Q Consensus       172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~  248 (305)
                      +...++++.+...+....+.. +.+...+..+..+|.+.|++++|.+.|++..+   .+..+|..+..+|...|++++|.
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~  161 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV  161 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence            899999999999999998875 66788899999999999999999999999874   36788999999999999999999


Q ss_pred             HHHHHHHHCCCCCCHH
Q 036263          249 EYFNLMQKGVFKTDEV  264 (305)
Q Consensus       249 ~~~~~m~~~g~~p~~~  264 (305)
                      +.|++..+  +.|+..
T Consensus       162 ~~~~~al~--~~p~~a  175 (184)
T 3vtx_A          162 KYFKKALE--KEEKKA  175 (184)
T ss_dssp             HHHHHHHH--TTHHHH
T ss_pred             HHHHHHHh--CCccCH
Confidence            99999988  456543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.37  E-value=2e-11  Score=100.75  Aligned_cols=192  Identities=13%  Similarity=0.019  Sum_probs=132.1

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhcCc-----------cccHHHHHHHHHcCCC--------------------hHHHH
Q 036263           99 MVSTALLDMYAKFGRMDLATVVFDVMRG-----------CDFWTALLNGFVKRDY--------------------FEEAL  147 (305)
Q Consensus        99 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~li~~~~~~g~--------------------~~~a~  147 (305)
                      .++..+...+...|++++|...+++...           ..++..+...+...|+                    +++|.
T Consensus        84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~  163 (338)
T 3ro2_A           84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV  163 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence            3456667777888888888888777643           2257777777888888                    88888


Q ss_pred             HHHHHHHHc----CCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhc----CC-CCChhHHHHHHHHHHhcCChHHHH
Q 036263          148 EYFRVMQIS----GVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQ----DF-KDNVRVCNTLMDVYSRFGCIEFAR  217 (305)
Q Consensus       148 ~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~  217 (305)
                      ..+++....    +-.| ...++..+...+...|++++|...+++..+.    +. .....++..+...|...|++++|.
T Consensus       164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  243 (338)
T 3ro2_A          164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS  243 (338)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            777765431    1112 2346667777778888888888888776543    11 111336777788888888888888


Q ss_pred             HHHHhcccC---------chhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHhccCcHHHHH
Q 036263          218 QVFQRMHKR---------TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG----VF-KTDEVSFTGALTACSHAGLIEDGL  283 (305)
Q Consensus       218 ~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~a~  283 (305)
                      ..+++..+.         ...++..+...|...|++++|...+++..+.    +- .....++..+...+.+.|++++|.
T Consensus       244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  323 (338)
T 3ro2_A          244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM  323 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence            888876531         1456777788888888888888888876543    11 111346677778888888888888


Q ss_pred             HHHHHHH
Q 036263          284 QYFDIMK  290 (305)
Q Consensus       284 ~~~~~m~  290 (305)
                      ..+++..
T Consensus       324 ~~~~~a~  330 (338)
T 3ro2_A          324 HFAEKHL  330 (338)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888776

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.37  E-value=1.7e-11  Score=104.78  Aligned_cols=244  Identities=15%  Similarity=0.057  Sum_probs=148.1

Q ss_pred             hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-----hhHHHHHHhhcCCCC----------------------CC
Q 036263           45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSH-----ITFVTLLSGCADFPS----------------------NN   97 (305)
Q Consensus        45 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~~~----------------------~~   97 (305)
                      ...+..+-..+...|++++|+..|++..+.  .|+.     ..+..+-..+...++                      ..
T Consensus        48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  125 (411)
T 4a1s_A           48 CLELALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE  125 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence            344556667888899999999999998885  3432     244444444444444                      12


Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhcCc-----------cccHHHHHHHHHcCCC-----------------hHHHHHH
Q 036263           98 VMVSTALLDMYAKFGRMDLATVVFDVMRG-----------CDFWTALLNGFVKRDY-----------------FEEALEY  149 (305)
Q Consensus        98 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~li~~~~~~g~-----------------~~~a~~~  149 (305)
                      ...+..+...+...|++++|...+++...           ...+..+...+...|+                 +++|...
T Consensus       126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~  205 (411)
T 4a1s_A          126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF  205 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence            23455566666667777777766665533           2245666666666677                 6666666


Q ss_pred             HHHHHHc----CCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCC-CC----hhHHHHHHHHHHhcCChHHHHHH
Q 036263          150 FRVMQIS----GVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK-DN----VRVCNTLMDVYSRFGCIEFARQV  219 (305)
Q Consensus       150 ~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~  219 (305)
                      +++..+.    +-.+ ...++..+...+...|++++|...+++..+.... .+    ...+..+...|...|++++|...
T Consensus       206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  285 (411)
T 4a1s_A          206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH  285 (411)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            6654321    1111 2335566666667777777777777666543100 01    23566677777777777777777


Q ss_pred             HHhcccC---------chhhHHHHHHHHHhcCChHHHHHHHHHHHHCC----CC-CCHHHHHHHHHHHhccCcHHHHHHH
Q 036263          220 FQRMHKR---------TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV----FK-TDEVSFTGALTACSHAGLIEDGLQY  285 (305)
Q Consensus       220 ~~~~~~~---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~-p~~~~~~~li~~~~~~g~~~~a~~~  285 (305)
                      +++..+.         ...++..+...|...|++++|...+++..+..    -. ....++..+...+.+.|++++|.+.
T Consensus       286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  365 (411)
T 4a1s_A          286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY  365 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            7666521         13566667777777777777777777665421    01 1124566666777777777777777


Q ss_pred             HHHHH
Q 036263          286 FDIMK  290 (305)
Q Consensus       286 ~~~m~  290 (305)
                      ++...
T Consensus       366 ~~~al  370 (411)
T 4a1s_A          366 AEQHL  370 (411)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77665

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.37  E-value=1.3e-10  Score=92.38  Aligned_cols=195  Identities=8%  Similarity=-0.052  Sum_probs=160.0

Q ss_pred             CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 036263           43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYG--TNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVV  120 (305)
Q Consensus        43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~  120 (305)
                      .+...|..+...+...|++++|++.|++..+..  ..|+...              ...++..+...+.+.|++++|...
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~A~~~  101 (258)
T 3uq3_A           36 KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKV--------------ISKSFARIGNAYHKLGDLKKTIEY  101 (258)
T ss_dssp             CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH--------------HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHH--------------HHHHHHHHHHHHHHcccHHHHHHH
Confidence            567889999999999999999999999987642  1122110              024467778889999999999999


Q ss_pred             HHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhH
Q 036263          121 FDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV  199 (305)
Q Consensus       121 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  199 (305)
                      |+.......-   ...+.+.|++++|...+++....  .| +...+..+...+...|++++|...++...+.. +.+...
T Consensus       102 ~~~a~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~  175 (258)
T 3uq3_A          102 YQKSLTEHRT---ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARG  175 (258)
T ss_dssp             HHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             HHHHHhcCch---hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHH
Confidence            9988652111   34566778899999999998774  44 46678888999999999999999999998876 567889


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263          200 CNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG  257 (305)
Q Consensus       200 ~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  257 (305)
                      +..+..+|.+.|++++|...+++..+   .+...|..+...+...|++++|...+++..+.
T Consensus       176 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  236 (258)
T 3uq3_A          176 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK  236 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            99999999999999999999999874   35778999999999999999999999998764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.36  E-value=1.7e-10  Score=92.66  Aligned_cols=197  Identities=8%  Similarity=-0.007  Sum_probs=158.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHh
Q 036263          100 VSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD--YLTIISVLNVC  172 (305)
Q Consensus       100 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~  172 (305)
                      .+......+.+.|++++|...|++..+     ...+..+...+...|++++|...+++..+.+-.|+  ...|..+...+
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~   84 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL   84 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence            345566778899999999999998844     55789999999999999999999999887432222  44588999999


Q ss_pred             cCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHH
Q 036263          173 ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALE  249 (305)
Q Consensus       173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~  249 (305)
                      ...|++++|...++...+.. +.+...+..+...|...|++++|...|++..+  | +...|..+...+...+++++|.+
T Consensus        85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~  163 (272)
T 3u4t_A           85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS  163 (272)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999875 55678999999999999999999999999985  3 55677777734455569999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHhccCc---HHHHHHHHHHHHHHhCCCCC
Q 036263          250 YFNLMQKGVFKTDEVSFTGALTACSHAGL---IEDGLQYFDIMKKIYRVSPQ  298 (305)
Q Consensus       250 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~~p~  298 (305)
                      .|++..+.. +.+...+..+..++...|+   +++|...++...+...-.|+
T Consensus       164 ~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  214 (272)
T 3u4t_A          164 SFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA  214 (272)
T ss_dssp             HHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGG
T ss_pred             HHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccc
Confidence            999998853 2346777778888888888   88888888888754443344

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.35  E-value=6.9e-10  Score=89.39  Aligned_cols=185  Identities=10%  Similarity=-0.037  Sum_probs=159.7

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhcCc---cccHHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036263           97 NVMVSTALLDMYAKFGRMDLATVVFDVMRG---CDFWTALLNGFVK----RDYFEEALEYFRVMQISGVEPDYLTIISVL  169 (305)
Q Consensus        97 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll  169 (305)
                      +...+..+...+.+.|++++|...|++..+   ...+..+...+..    .+++++|...|++..+.+   +...+..+-
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg   81 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG   81 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence            345566777888999999999999998754   4567888888999    999999999999988875   677788888


Q ss_pred             HHhcC----cCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhccc-CchhhHHHHHHHHHh
Q 036263          170 NVCAN----VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR----FGCIEFARQVFQRMHK-RTLVSWNSIIVGFAV  240 (305)
Q Consensus       170 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~  240 (305)
                      ..+..    .+++++|...+++..+.+   +...+..+...|..    .+++++|...|++..+ .+...+..+...|..
T Consensus        82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~  158 (273)
T 1ouv_A           82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA  158 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence            88888    999999999999998875   67888999999999    9999999999999875 366778888888888


Q ss_pred             ----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHH
Q 036263          241 ----NGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH----AGLIEDGLQYFDIMK  290 (305)
Q Consensus       241 ----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~  290 (305)
                          .+++++|...|++..+.+   +...+..+...+..    .+++++|...++...
T Consensus       159 ~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~  213 (273)
T 1ouv_A          159 GRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKAC  213 (273)
T ss_dssp             TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH
Confidence                999999999999998864   46777788888888    999999999999887

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.35  E-value=2.5e-11  Score=106.05  Aligned_cols=189  Identities=12%  Similarity=-0.013  Sum_probs=164.0

Q ss_pred             CChhHHHHHHHHHHhcCCh-HHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036263           96 NNVMVSTALLDMYAKFGRM-DLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVL  169 (305)
Q Consensus        96 ~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll  169 (305)
                      .+...+..+...+...|++ ++|+..|++...     ...|..+...|...|++++|.+.|++..+.  .|+...+..+.
T Consensus       100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg  177 (474)
T 4abn_A          100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS  177 (474)
T ss_dssp             CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence            3556677788889999999 999999998854     567999999999999999999999998875  57788899999


Q ss_pred             HHhcCc---------CChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc--------CChHHHHHHHHhccc--C----
Q 036263          170 NVCANV---------RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF--------GCIEFARQVFQRMHK--R----  226 (305)
Q Consensus       170 ~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~a~~~~~~~~~--~----  226 (305)
                      ..+...         |++++|...+++..+.. +.+...|..+..+|...        |++++|...|++..+  |    
T Consensus       178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  256 (474)
T 4abn_A          178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS  256 (474)
T ss_dssp             HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred             HHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence            999999         99999999999999886 56788999999999998        999999999999874  4    


Q ss_pred             chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 036263          227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDI  288 (305)
Q Consensus       227 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  288 (305)
                      +...|..+..+|...|++++|.+.|++..+.. +-+...+..+...+...|++++|.+.+..
T Consensus       257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          257 NPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            67889999999999999999999999998853 23556788888899999999999876544

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.33  E-value=1.5e-10  Score=86.97  Aligned_cols=158  Identities=13%  Similarity=0.086  Sum_probs=107.9

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHh
Q 036263          130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR  209 (305)
Q Consensus       130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  209 (305)
                      |..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+..
T Consensus        11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~   88 (186)
T 3as5_A           11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ   88 (186)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence            4445555666666666666666554431 2245566666667777777777777777766653 4456667777777777


Q ss_pred             cCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 036263          210 FGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYF  286 (305)
Q Consensus       210 ~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~  286 (305)
                      .|++++|.+.++++.+   .+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+
T Consensus        89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~  167 (186)
T 3as5_A           89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHF  167 (186)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            7777777777777653   355667777777778888888888887776653 335667777777888888888888888


Q ss_pred             HHHH
Q 036263          287 DIMK  290 (305)
Q Consensus       287 ~~m~  290 (305)
                      +...
T Consensus       168 ~~~~  171 (186)
T 3as5_A          168 KKAN  171 (186)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7776

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.33  E-value=2.9e-10  Score=85.41  Aligned_cols=157  Identities=15%  Similarity=0.062  Sum_probs=136.5

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 036263           99 MVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCA  173 (305)
Q Consensus        99 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~  173 (305)
                      ..+..+...+...|++++|...++.+..     ...+..+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~   87 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            3456677788899999999999999865     4558888899999999999999999987753 336778888999999


Q ss_pred             CcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHH
Q 036263          174 NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEY  250 (305)
Q Consensus       174 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~  250 (305)
                      ..|++++|...++.+.+.. +.+...+..+...+...|++++|...+++..+   .+...+..+...+...|++++|...
T Consensus        88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  166 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH  166 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence            9999999999999998875 56788899999999999999999999999874   3568899999999999999999999


Q ss_pred             HHHHHHC
Q 036263          251 FNLMQKG  257 (305)
Q Consensus       251 ~~~m~~~  257 (305)
                      +++..+.
T Consensus       167 ~~~~~~~  173 (186)
T 3as5_A          167 FKKANEL  173 (186)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            9998764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.30  E-value=3.5e-10  Score=95.84  Aligned_cols=224  Identities=8%  Similarity=-0.019  Sum_probs=171.4

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCC-CCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc---
Q 036263           51 SISRHCRSGCILEAALEFTRMRLYG-TNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG---  126 (305)
Q Consensus        51 li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---  126 (305)
                      .-..+...|++++|++.|++..+.- -.++...              ...++..+...+...|+++.|...+++..+   
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~  174 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIE--------------KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYK  174 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHH--------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHH--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            4456678999999999999987641 1233221              123467778889999999999999887744   


Q ss_pred             ---------cccHHHHHHHHHcCCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhc-
Q 036263          127 ---------CDFWTALLNGFVKRDYFEEALEYFRVMQIS----GVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQ-  191 (305)
Q Consensus       127 ---------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-  191 (305)
                               ..+++.+...|...|++++|...+++..+.    +-.+ ...++..+...|...|++++|...+++..+. 
T Consensus       175 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  254 (383)
T 3ulq_A          175 EHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF  254 (383)
T ss_dssp             TCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence                     246888899999999999999999887643    1111 1357888899999999999999999988762 


Q ss_pred             ---CC-CCChhHHHHHHHHHHhcCChHHHHHHHHhcccC-----c---hhhHHHHHHHHHhcCC---hHHHHHHHHHHHH
Q 036263          192 ---DF-KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR-----T---LVSWNSIIVGFAVNGF---VGEALEYFNLMQK  256 (305)
Q Consensus       192 ---~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~---~~~~~~li~~~~~~g~---~~~a~~~~~~m~~  256 (305)
                         +. +....++..+...|.+.|++++|...+++..+-     +   ...+..+...|...|+   +++|..++++.  
T Consensus       255 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~--  332 (383)
T 3ulq_A          255 EESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK--  332 (383)
T ss_dssp             HHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT--
T ss_pred             HhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC--
Confidence               33 444778899999999999999999999987631     2   2335677788888998   77777777766  


Q ss_pred             CCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 036263          257 GVFKT-DEVSFTGALTACSHAGLIEDGLQYFDIMKK  291 (305)
Q Consensus       257 ~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  291 (305)
                       +..| ....+..+...|...|++++|...++...+
T Consensus       333 -~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          333 -MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence             3333 335677888899999999999999998874

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.30  E-value=5.6e-11  Score=95.70  Aligned_cols=162  Identities=11%  Similarity=0.037  Sum_probs=98.7

Q ss_pred             cHHHHHHHHHcCCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhc------C-CC
Q 036263          129 FWTALLNGFVKRDYFEEALEYFRVMQIS------GVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQ------D-FK  194 (305)
Q Consensus       129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~  194 (305)
                      ++..+...+...|++++|...+++..+.      +-.| ...++..+...+...|++++|...+++..+.      . -+
T Consensus        45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  124 (283)
T 3edt_B           45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP  124 (283)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence            3555666666666666666666655432      1122 2445566666666666666666666665443      1 12


Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHhcccC-----------chhhHHHHHHHHHhcCChHHHHHHHHHHHHC------
Q 036263          195 DNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR-----------TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG------  257 (305)
Q Consensus       195 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------  257 (305)
                      .....+..+...|...|++++|...+++..+.           ...++..+...|...|++++|..++++..+.      
T Consensus       125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~  204 (283)
T 3edt_B          125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF  204 (283)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            23455566666666666666666666655421           2345556666666666666666666665432      


Q ss_pred             ------------------------------------------CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          258 ------------------------------------------VFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       258 ------------------------------------------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                                                                ..+....++..+...+...|++++|..+++...
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  279 (283)
T 3edt_B          205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS  279 (283)
T ss_dssp             SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                                                      111234577888899999999999999999876

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.29  E-value=1e-09  Score=90.20  Aligned_cols=195  Identities=10%  Similarity=0.038  Sum_probs=154.4

Q ss_pred             CchHhHHHHHHHHH-------hcCCh-------hHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHH
Q 036263           43 DTTVQWTSSISRHC-------RSGCI-------LEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMY  108 (305)
Q Consensus        43 ~~~~~~~~li~~~~-------~~~~~-------~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~  108 (305)
                      .+...|......+.       +.|++       ++|..+|++..+. +.|+.                 ...|..+...+
T Consensus        48 ~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~-----------------~~~~~~~~~~~  109 (308)
T 2ond_A           48 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKN-----------------MLLYFAYADYE  109 (308)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTC-----------------HHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCccc-----------------HHHHHHHHHHH
Confidence            36667777777765       35886       8999999998863 24542                 23456677778


Q ss_pred             HhcCChHHHHHHHHhcCc-----cc-cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-cCcCChhHH
Q 036263          109 AKFGRMDLATVVFDVMRG-----CD-FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVC-ANVRTLGIG  181 (305)
Q Consensus       109 ~~~g~~~~a~~~~~~~~~-----~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~~~~~~a  181 (305)
                      .+.|++++|..+|+++..     .. .|..+...+.+.|++++|..+|++..+.. +++...|....... ...|+.++|
T Consensus       110 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A  188 (308)
T 2ond_A          110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA  188 (308)
T ss_dssp             HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred             HhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence            899999999999999854     33 78999999999999999999999988753 23444454333332 237999999


Q ss_pred             HHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc----C---chhhHHHHHHHHHhcCChHHHHHHHHHH
Q 036263          182 LWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK----R---TLVSWNSIIVGFAVNGFVGEALEYFNLM  254 (305)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~---~~~~~~~li~~~~~~g~~~~a~~~~~~m  254 (305)
                      ..+|+...+.. +.+...|..++..+.+.|+.++|..+|++...    +   ....|..++..+...|+.+.|..+++++
T Consensus       189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a  267 (308)
T 2ond_A          189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999998874 55788999999999999999999999999875    2   3468888999999999999999999999


Q ss_pred             HHC
Q 036263          255 QKG  257 (305)
Q Consensus       255 ~~~  257 (305)
                      .+.
T Consensus       268 ~~~  270 (308)
T 2ond_A          268 FTA  270 (308)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.27  E-value=1.2e-09  Score=103.23  Aligned_cols=224  Identities=9%  Similarity=0.028  Sum_probs=161.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhh---cCCCC-----CChhHHHHHHHHHHhcCChHHHHH
Q 036263           48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGC---ADFPS-----NNVMVSTALLDMYAKFGRMDLATV  119 (305)
Q Consensus        48 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~---~~~~~-----~~~~~~~~ll~~~~~~g~~~~a~~  119 (305)
                      ..-+-..+...|++++|.++|++..    . .....+.++...   .++.+     .+..+|..+..++.+.|++++|.+
T Consensus      1052 ~~eIA~Iai~lglyEEAf~IYkKa~----~-~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A         1052 APDIANIAISNELFEEAFAIFRKFD----V-NTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHcC----C-HHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHH
Confidence            3445677888999999999999852    1 122222233211   11111     567889999999999999999999


Q ss_pred             HHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhH
Q 036263          120 VFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRV  199 (305)
Q Consensus       120 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  199 (305)
                      .|.+..+...|..++.++.+.|++++|.+.+...++..  ++....+.+..+|++.+++++...+.    +   .++...
T Consensus      1127 sYiKAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad 1197 (1630)
T 1xi4_A         1127 SYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAH 1197 (1630)
T ss_pred             HHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHH
Confidence            99999888889999999999999999999998766543  44333445888888888877644442    1   345556


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHC----------------------
Q 036263          200 CNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG----------------------  257 (305)
Q Consensus       200 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----------------------  257 (305)
                      |..+...|...|++++|..+|...     ..|..+...|++.|++++|.+.+++....                      
T Consensus      1198 ~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~c 1272 (1630)
T 1xi4_A         1198 IQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMC 1272 (1630)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHH
Confidence            667888888888888888888875     37777777777777777777777654221                      


Q ss_pred             --CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          258 --VFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       258 --g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                        ++..++..+..++..|.+.|.+++|+.+++...
T Consensus      1273 gl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A         1273 GLHIVVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred             HHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence              122355667788888999999999999986554

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.25  E-value=3.6e-10  Score=103.03  Aligned_cols=155  Identities=10%  Similarity=0.009  Sum_probs=73.9

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHh
Q 036263           99 MVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVC  172 (305)
Q Consensus        99 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~  172 (305)
                      ..++.|..++.+.|++++|+..|++..+     ...|+.+...|.+.|++++|++.|++..+.  .| +...|..+-.++
T Consensus        10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~l   87 (723)
T 4gyw_A           10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTL   87 (723)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence            3445555555555555555555554422     233444555555555555555555544432  23 244444444555


Q ss_pred             cCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHH
Q 036263          173 ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALE  249 (305)
Q Consensus       173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~  249 (305)
                      ...|++++|.+.|++..+.. +-+...|+.+..+|.+.|++++|.+.|++..+  | +...|..+...|...|++++|.+
T Consensus        88 ~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~  166 (723)
T 4gyw_A           88 KEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDE  166 (723)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHH
Confidence            55555555555555544443 23344445555555555555555555544432  2 33444444455555555555555


Q ss_pred             HHHHHHH
Q 036263          250 YFNLMQK  256 (305)
Q Consensus       250 ~~~~m~~  256 (305)
                      .+++..+
T Consensus       167 ~~~kal~  173 (723)
T 4gyw_A          167 RMKKLVS  173 (723)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444433

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.23  E-value=9.8e-10  Score=92.92  Aligned_cols=187  Identities=15%  Similarity=0.086  Sum_probs=159.5

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCC-hHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 036263           98 VMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDY-FEEALEYFRVMQISGVEP-DYLTIISVLN  170 (305)
Q Consensus        98 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p-~~~t~~~ll~  170 (305)
                      ...|..+..++.+.|++++|+..++++..     ...|+.+...+...|+ +++|+..|++..+.  .| +...|..+-.
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~~a~~~~g~  174 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence            34577788889999999999999998854     5668899999999997 99999999999875  45 6788999999


Q ss_pred             HhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHh-cCChHH
Q 036263          171 VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAV-NGFVGE  246 (305)
Q Consensus       171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~-~g~~~~  246 (305)
                      ++...|++++|...++++++.. +-+...|..+..++.+.|++++|...|+++.+   .+...|+.+..++.. .|..++
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~e  253 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR  253 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchH
Confidence            9999999999999999999986 66789999999999999999999999999984   367899999999999 666577


Q ss_pred             H-----HHHHHHHHHCCCCC-CHHHHHHHHHHHhccC--cHHHHHHHHHHH
Q 036263          247 A-----LEYFNLMQKGVFKT-DEVSFTGALTACSHAG--LIEDGLQYFDIM  289 (305)
Q Consensus       247 a-----~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g--~~~~a~~~~~~m  289 (305)
                      |     ++.+++..+.  .| +...|..+...+.+.|  ++++|++.+..+
T Consensus       254 A~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~  302 (382)
T 2h6f_A          254 AVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL  302 (382)
T ss_dssp             HHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence            7     5888888874  35 5677888888888877  688888887765

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.22  E-value=4.4e-10  Score=102.48  Aligned_cols=159  Identities=13%  Similarity=0.010  Sum_probs=142.4

Q ss_pred             cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHH
Q 036263          127 CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMD  205 (305)
Q Consensus       127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  205 (305)
                      ...|+.|...+.+.|++++|++.|++..+.  .| +..++..+-.+|.+.|++++|...|++..+.. +-+...|..+..
T Consensus         9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~   85 (723)
T 4gyw_A            9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            346889999999999999999999998874  56 47889999999999999999999999999876 556889999999


Q ss_pred             HHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHH
Q 036263          206 VYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT-DEVSFTGALTACSHAGLIED  281 (305)
Q Consensus       206 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~  281 (305)
                      +|.+.|++++|.+.|++..+   .+...|+.+..+|...|++++|.+.|++..+.  .| +...+..+..++...|++++
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHH
Confidence            99999999999999999874   36789999999999999999999999999884  45 56788999999999999999


Q ss_pred             HHHHHHHHH
Q 036263          282 GLQYFDIMK  290 (305)
Q Consensus       282 a~~~~~~m~  290 (305)
                      |.+.+++..
T Consensus       164 A~~~~~kal  172 (723)
T 4gyw_A          164 YDERMKKLV  172 (723)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988876

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.22  E-value=1.3e-09  Score=92.29  Aligned_cols=222  Identities=9%  Similarity=-0.019  Sum_probs=166.6

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCC-CCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc----
Q 036263           52 ISRHCRSGCILEAALEFTRMRLYG-TNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG----  126 (305)
Q Consensus        52 i~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----  126 (305)
                      -..+...|++++|+..|++..+.. -.++...              ...++..+..+|...|+++.|...+++..+    
T Consensus       108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~  173 (378)
T 3q15_A          108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIE--------------KAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQN  173 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHH--------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHH--------------HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence            345568999999999999987642 1133221              123467788889999999999988877643    


Q ss_pred             --------cccHHHHHHHHHcCCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhc--
Q 036263          127 --------CDFWTALLNGFVKRDYFEEALEYFRVMQIS----GVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQ--  191 (305)
Q Consensus       127 --------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--  191 (305)
                              ..+++.+...+...|++++|.+.|++..+.    +-.+ ...++..+...+...|++++|...+++..+.  
T Consensus       174 ~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~  253 (378)
T 3q15_A          174 HPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR  253 (378)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             CCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence                    335778889999999999999999887542    2111 2456788888999999999999999988761  


Q ss_pred             --CCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc-------C-chhhHHHHHHHHHhcCC---hHHHHHHHHHHHHCC
Q 036263          192 --DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK-------R-TLVSWNSIIVGFAVNGF---VGEALEYFNLMQKGV  258 (305)
Q Consensus       192 --~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------~-~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g  258 (305)
                        +.+....++..+...|.+.|++++|...+++..+       + ....+..+...|...++   +.+|..++++.   +
T Consensus       254 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~  330 (378)
T 3q15_A          254 EKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---N  330 (378)
T ss_dssp             HHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---T
T ss_pred             hhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---C
Confidence              2234477889999999999999999999998763       1 22345666666777888   77777777762   2


Q ss_pred             CCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          259 FKT-DEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       259 ~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      ..| ....+..+...|.+.|++++|...|+...
T Consensus       331 ~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al  363 (378)
T 3q15_A          331 LHAYIEACARSAAAVFESSCHFEQAAAFYRKVL  363 (378)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            223 33566678889999999999999999876

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.20  E-value=3.6e-10  Score=98.66  Aligned_cols=190  Identities=11%  Similarity=-0.082  Sum_probs=161.5

Q ss_pred             CchHhHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036263           43 DTTVQWTSSISRHCRSGCI-LEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVF  121 (305)
Q Consensus        43 ~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~  121 (305)
                      .+...|..+-..+...|++ ++|++.|++..+.  .|+                 +...|..+..+|.+.|++++|...|
T Consensus       100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~-----------------~~~a~~~lg~~~~~~g~~~~A~~~~  160 (474)
T 4abn_A          100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPE-----------------LVEAWNQLGEVYWKKGDVTSAHTCF  160 (474)
T ss_dssp             CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTT-----------------CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4778888889999999999 9999999999874  443                 2345677788899999999999999


Q ss_pred             HhcCc----cccHHHHHHHHHcC---------CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCc--------CChh
Q 036263          122 DVMRG----CDFWTALLNGFVKR---------DYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANV--------RTLG  179 (305)
Q Consensus       122 ~~~~~----~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~--------~~~~  179 (305)
                      ++...    ...+..+...+...         |++++|.+.|++..+.  .| +...|..+..+|...        |+++
T Consensus       161 ~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~  238 (474)
T 4abn_A          161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ  238 (474)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence            98854    45688888999999         9999999999998875  44 578888888899888        9999


Q ss_pred             HHHHHHHHHhhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHH
Q 036263          180 IGLWMHRYVPKQDFK---DNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNL  253 (305)
Q Consensus       180 ~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~  253 (305)
                      +|...|++..+.. +   .+...|..+..+|...|++++|.+.|++..+  | +...+..+...+...|++++|.+.+.+
T Consensus       239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999875 3   5788999999999999999999999999874  3 566788889999999999999886655


Q ss_pred             H
Q 036263          254 M  254 (305)
Q Consensus       254 m  254 (305)
                      +
T Consensus       318 ~  318 (474)
T 4abn_A          318 T  318 (474)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.20  E-value=5e-08  Score=85.45  Aligned_cols=187  Identities=12%  Similarity=-0.009  Sum_probs=114.9

Q ss_pred             hhHHHHHHHHHHh----cCChHHHHHHHHhcCc---cccHHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCCHHHHH
Q 036263           98 VMVSTALLDMYAK----FGRMDLATVVFDVMRG---CDFWTALLNGFVK----RDYFEEALEYFRVMQISGVEPDYLTII  166 (305)
Q Consensus        98 ~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~---~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~  166 (305)
                      ...+..+...|..    .++.++|...|++..+   ...+..+...+..    .++.++|...|++..+.|   +...+.
T Consensus       219 ~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~  295 (490)
T 2xm6_A          219 ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQY  295 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHH
Confidence            3344444444443    4555666666555433   2234444444544    566666666666655443   233444


Q ss_pred             HHHHHhcCc-----CChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhccc-CchhhHHHHHHH
Q 036263          167 SVLNVCANV-----RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG---CIEFARQVFQRMHK-RTLVSWNSIIVG  237 (305)
Q Consensus       167 ~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~-~~~~~~~~li~~  237 (305)
                      .+-..+...     ++.++|...++...+.|   +...+..+...|...|   +.++|.+.|++..+ .+...+..+...
T Consensus       296 ~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~  372 (490)
T 2xm6_A          296 YLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNA  372 (490)
T ss_dssp             HHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            444444444     66777777777766654   3445556666666555   56777777777654 356677777777


Q ss_pred             HHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHHhC
Q 036263          238 FAV----NGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH----AGLIEDGLQYFDIMKKIYR  294 (305)
Q Consensus       238 ~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~  294 (305)
                      |..    .+++++|..+|++..+.|   +...+..+-..|.+    .+++++|..+|+... ..+
T Consensus       373 y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~-~~~  433 (490)
T 2xm6_A          373 LLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAS-TND  433 (490)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HHH
T ss_pred             HHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HCC
Confidence            777    788888888888887765   45666667777766    788888888888777 443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.19  E-value=2.5e-09  Score=83.66  Aligned_cols=182  Identities=10%  Similarity=-0.039  Sum_probs=102.1

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhcCc------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 036263           98 VMVSTALLDMYAKFGRMDLATVVFDVMRG------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLN  170 (305)
Q Consensus        98 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~  170 (305)
                      ...+......+.+.|++++|...|+....      ...+..+..++...|++++|...|++..+.  .| +...+..+..
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~   84 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSA   84 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHH
Confidence            34556666666666777777766665532      223444666666666677776666666543  33 3455666666


Q ss_pred             HhcCcCChhHHHHHHHHHhhcCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHhccc--Cc---hhhHHHHHHHH
Q 036263          171 VCANVRTLGIGLWMHRYVPKQDFKDNV-------RVCNTLMDVYSRFGCIEFARQVFQRMHK--RT---LVSWNSIIVGF  238 (305)
Q Consensus       171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~---~~~~~~li~~~  238 (305)
                      .+...|++++|...+++..+.. +.+.       ..|..+...+...|++++|.+.|++..+  |+   ...|..+...|
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  163 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF  163 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence            6666666666666666666653 2333       3455566666666666666666666653  22   23444555555


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          239 AVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       239 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      ...|     ..+++++...+ ..+...|....  ....+.+++|...++...
T Consensus       164 ~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~  207 (228)
T 4i17_A          164 YNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAV  207 (228)
T ss_dssp             HHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence            4332     23334443332 12233333322  223355689999998887

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.18  E-value=1e-07  Score=83.46  Aligned_cols=235  Identities=11%  Similarity=-0.034  Sum_probs=125.3

Q ss_pred             chHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcC----CCC--------------CChhHH
Q 036263           44 TTVQWTSSISRHCR----SGCILEAALEFTRMRLYGTNPSHITFVTLLSGCAD----FPS--------------NNVMVS  101 (305)
Q Consensus        44 ~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~--------------~~~~~~  101 (305)
                      +...+..+-..|..    .+++++|...|++..+.|.   ...+..+=..+..    .++              .+...+
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~  114 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGY---TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQ  114 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            55666666666666    6777777777777766532   2222222222222    222              344455


Q ss_pred             HHHHHHHHh----cCChHHHHHHHHhcCc---cccHHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036263          102 TALLDMYAK----FGRMDLATVVFDVMRG---CDFWTALLNGFVK----RDYFEEALEYFRVMQISGVEPDYLTIISVLN  170 (305)
Q Consensus       102 ~~ll~~~~~----~g~~~~a~~~~~~~~~---~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~  170 (305)
                      ..|...|..    .+++++|...|++..+   ...+..|...|..    .+++++|.+.|++..+.|   +...+..+-.
T Consensus       115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~  191 (490)
T 2xm6_A          115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGY  191 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence            556666665    5667777777766543   3334555555554    566666666666665543   3444444444


Q ss_pred             HhcC----cCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhccc-CchhhHHHHHHHHHh-
Q 036263          171 VCAN----VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR----FGCIEFARQVFQRMHK-RTLVSWNSIIVGFAV-  240 (305)
Q Consensus       171 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~-  240 (305)
                      .|..    .++.++|...++...+.|   +...+..+...|..    .++.++|...|++..+ .+...+..+...|.. 
T Consensus       192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g  268 (490)
T 2xm6_A          192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQG  268 (490)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred             HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
Confidence            4444    566666666666665543   33445555555554    5556666666655543 233444444444544 


Q ss_pred             ---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHHH
Q 036263          241 ---NGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA-----GLIEDGLQYFDIMK  290 (305)
Q Consensus       241 ---~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~  290 (305)
                         .+++++|..+|++..+.|   +...+..+...+...     +++++|..+|+...
T Consensus       269 ~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~  323 (490)
T 2xm6_A          269 LAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA  323 (490)
T ss_dssp             TTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence               555556665555555443   233333444444443     55555555555544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.17  E-value=1.5e-08  Score=95.92  Aligned_cols=227  Identities=9%  Similarity=0.036  Sum_probs=158.4

Q ss_pred             CCchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHhhHHHHHHhhcCCCC---------CChhHHHHHHHHHHh
Q 036263           42 IDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGT--NPSHITFVTLLSGCADFPS---------NNVMVSTALLDMYAK  110 (305)
Q Consensus        42 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~---------~~~~~~~~ll~~~~~  110 (305)
                      .|+.+  ...+++|...|.+.+|+++|++..-.+-  .-+...-+.++.+..+...         .+......+...+..
T Consensus       984 ~PeeV--s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~ 1061 (1630)
T 1xi4_A          984 DPEEV--SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAIS 1061 (1630)
T ss_pred             CHHHh--HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHh
Confidence            45555  4558899999999999999999984321  1123444556666655544         112222333455555


Q ss_pred             cCChHHHHHHHHhc---------------------------CccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH
Q 036263          111 FGRMDLATVVFDVM---------------------------RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL  163 (305)
Q Consensus       111 ~g~~~~a~~~~~~~---------------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~  163 (305)
                      .|.+++|..+|++.                           ....+|..+..++.+.|++++|.+.|.+-      -|..
T Consensus      1062 lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~s 1135 (1630)
T 1xi4_A         1062 NELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPS 1135 (1630)
T ss_pred             CCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChH
Confidence            56666666665554                           33556778888888888888888887442      3566


Q ss_pred             HHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCC
Q 036263          164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF  243 (305)
Q Consensus       164 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~  243 (305)
                      .|..++.+|.+.|++++|.+++...++..  +++...+.++.+|++.+++++...+.   ..++...|..+...|...|+
T Consensus      1136 ay~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~ 1210 (1630)
T 1xi4_A         1136 SYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKM 1210 (1630)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCC
Confidence            77778888888888888888888776654  34334445888888888887644443   35566777788888999999


Q ss_pred             hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          244 VGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       244 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      +++|..+|...         ..|..+..++.+.|+++.|.+.++...
T Consensus      1211 YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~ 1248 (1630)
T 1xi4_A         1211 YDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN 1248 (1630)
T ss_pred             HHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence            99999999884         478888899999999999988887653

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.14  E-value=3.8e-08  Score=82.83  Aligned_cols=190  Identities=9%  Similarity=-0.095  Sum_probs=126.1

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhcCc-------------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCC--C--CHH
Q 036263          101 STALLDMYAKFGRMDLATVVFDVMRG-------------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVE--P--DYL  163 (305)
Q Consensus       101 ~~~ll~~~~~~g~~~~a~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p--~~~  163 (305)
                      +..+...+...|++++|...+++...             ...+..+...+...|++++|...+++.....-.  +  ...
T Consensus        96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  175 (373)
T 1hz4_A           96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ  175 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence            45566677788888888888876633             123455667778888888888888876553211  1  235


Q ss_pred             HHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC-hhHHH-----HHHHHHHhcCChHHHHHHHHhcccCc-------hhh
Q 036263          164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN-VRVCN-----TLMDVYSRFGCIEFARQVFQRMHKRT-------LVS  230 (305)
Q Consensus       164 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~li~~~~~~g~~~~a~~~~~~~~~~~-------~~~  230 (305)
                      ++..+...+...|++++|...+++..+..-.++ ...+.     ..+..+...|++++|...+++...+.       ...
T Consensus       176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  255 (373)
T 1hz4_A          176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ  255 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence            666777778888888888888887765321111 11111     23344678888888888888876432       124


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          231 WNSIIVGFAVNGFVGEALEYFNLMQKG----VFKTDE-VSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       231 ~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      +..+...+...|++++|...+++....    |..++. ..+..+..++...|+.++|...++...
T Consensus       256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al  320 (373)
T 1hz4_A          256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL  320 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            566777888888888888888876542    222222 255566677788888888888888765

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.11  E-value=5.8e-09  Score=85.03  Aligned_cols=197  Identities=9%  Similarity=-0.080  Sum_probs=134.1

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 036263           46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNP-SHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM  124 (305)
Q Consensus        46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~  124 (305)
                      ..|+.....|...|++++|.+.|++..+..... +..              ....+|+.+..+|.+.|++++|...|++.
T Consensus        38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------~~a~~~~~lg~~~~~~g~~~~A~~~~~~A  103 (292)
T 1qqe_A           38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNED--------------EAGNTYVEAYKCFKSGGNSVNAVDSLENA  103 (292)
T ss_dssp             HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHH--------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            468888888999999999999998876531000 100              01235677788888999999999888877


Q ss_pred             Cc-----------cccHHHHHHHHHcC-CChHHHHHHHHHHHHcCC---CC-C-HHHHHHHHHHhcCcCChhHHHHHHHH
Q 036263          125 RG-----------CDFWTALLNGFVKR-DYFEEALEYFRVMQISGV---EP-D-YLTIISVLNVCANVRTLGIGLWMHRY  187 (305)
Q Consensus       125 ~~-----------~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~---~p-~-~~t~~~ll~~~~~~~~~~~a~~~~~~  187 (305)
                      ..           ..+++.+...|... |++++|+..|++..+...   .+ . ..++..+...+...|++++|...+++
T Consensus       104 l~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  183 (292)
T 1qqe_A          104 IQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK  183 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            44           23577788888885 888888888887654210   11 1 34677788888888888888888888


Q ss_pred             HhhcCCCCCh------hHHHHHHHHHHhcCChHHHHHHHHhccc--Cch------hhHHHHHHHHH--hcCChHHHHHHH
Q 036263          188 VPKQDFKDNV------RVCNTLMDVYSRFGCIEFARQVFQRMHK--RTL------VSWNSIIVGFA--VNGFVGEALEYF  251 (305)
Q Consensus       188 ~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~------~~~~~li~~~~--~~g~~~~a~~~~  251 (305)
                      ..+.......      ..|..+..++...|++++|...|++..+  |+.      ..+..++.+|.  ..+++++|...|
T Consensus       184 al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~  263 (292)
T 1qqe_A          184 LIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEF  263 (292)
T ss_dssp             HHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred             HHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence            8775422221      1567777788888888888888888764  221      12344555554  345677777777


Q ss_pred             HHHHH
Q 036263          252 NLMQK  256 (305)
Q Consensus       252 ~~m~~  256 (305)
                      +++..
T Consensus       264 ~~~~~  268 (292)
T 1qqe_A          264 DNFMR  268 (292)
T ss_dssp             TTSSC
T ss_pred             ccCCc
Confidence            66554

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.11  E-value=4.5e-09  Score=74.27  Aligned_cols=118  Identities=14%  Similarity=0.173  Sum_probs=51.1

Q ss_pred             HhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHH
Q 036263          171 VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEA  247 (305)
Q Consensus       171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a  247 (305)
                      .+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|...++++.+   .+...+..+...+...|++++|
T Consensus        10 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A   88 (136)
T 2fo7_A           10 AYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA   88 (136)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHH
Confidence            3333334444444443333322 22233334444444444444444444444331   1233444444444555555555


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          248 LEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       248 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      .++++++.+.. +.+...+..+...+.+.|++++|...++.+.
T Consensus        89 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  130 (136)
T 2fo7_A           89 IEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL  130 (136)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            55555544432 1233444445555555555555555555544

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.11  E-value=5e-09  Score=74.02  Aligned_cols=127  Identities=17%  Similarity=0.226  Sum_probs=111.6

Q ss_pred             cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 036263          129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS  208 (305)
Q Consensus       129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  208 (305)
                      .|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence            47788899999999999999999988763 3367788888999999999999999999998875 556788999999999


Q ss_pred             hcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263          209 RFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKG  257 (305)
Q Consensus       209 ~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  257 (305)
                      ..|++++|.+.++++.+   .+...+..+...+...|++++|...++++...
T Consensus        81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            99999999999998874   35678889999999999999999999998774

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.11  E-value=1.9e-09  Score=86.58  Aligned_cols=187  Identities=12%  Similarity=0.028  Sum_probs=142.9

Q ss_pred             HhcCChhHHHHHHHHHHhCC---CCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc------
Q 036263           56 CRSGCILEAALEFTRMRLYG---TNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG------  126 (305)
Q Consensus        56 ~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------  126 (305)
                      ...|++++|+..|++..+.-   ..++..              ....++..+...+...|++++|...+++...      
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   77 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHP--------------DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTL   77 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCH--------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHc
Confidence            45678888888887776521   111111              1234456778889999999999999987743      


Q ss_pred             -------cccHHHHHHHHHcCCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhc-
Q 036263          127 -------CDFWTALLNGFVKRDYFEEALEYFRVMQIS------GVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQ-  191 (305)
Q Consensus       127 -------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-  191 (305)
                             ..++..+...+...|++++|.+.+++..+.      .-.| ...++..+...+...|++++|...+++..+. 
T Consensus        78 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  157 (283)
T 3edt_B           78 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIY  157 (283)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence                   345888999999999999999999987654      1123 4677888999999999999999999998765 


Q ss_pred             -----C-CCCChhHHHHHHHHHHhcCChHHHHHHHHhcccC---------------------------------------
Q 036263          192 -----D-FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR---------------------------------------  226 (305)
Q Consensus       192 -----~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---------------------------------------  226 (305)
                           + .+....++..+...|...|++++|...+++..+.                                       
T Consensus       158 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (283)
T 3edt_B          158 ATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEY  237 (283)
T ss_dssp             HHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence                 1 1223667889999999999999999999877521                                       


Q ss_pred             -------------chhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263          227 -------------TLVSWNSIIVGFAVNGFVGEALEYFNLMQK  256 (305)
Q Consensus       227 -------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  256 (305)
                                   ...++..+...|...|++++|..++++..+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          238 GSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             -----CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                         124678889999999999999999998765

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.10  E-value=2.2e-08  Score=87.01  Aligned_cols=244  Identities=10%  Similarity=-0.048  Sum_probs=126.5

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHHHHhC-----C--CCC-CHhhHHHHHHhhcCCCC--------------------
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTRMRLY-----G--TNP-SHITFVTLLSGCADFPS--------------------   95 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g--~~p-~~~~~~~ll~~~~~~~~--------------------   95 (305)
                      ....||.+-..+...|++++|++.|++..+.     +  ..| ...+|+.+-..+...|+                    
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            4667999999999999999999999887542     1  122 23344444444444444                    


Q ss_pred             ----CChhHHHHHHHHHHhc--CChHHHHHHHHhcCc-----cccHHHHHH---HHHcCCChHHHHHHHHHHHHcCCCC-
Q 036263           96 ----NNVMVSTALLDMYAKF--GRMDLATVVFDVMRG-----CDFWTALLN---GFVKRDYFEEALEYFRVMQISGVEP-  160 (305)
Q Consensus        96 ----~~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~-----~~~~~~li~---~~~~~g~~~~a~~~~~~m~~~g~~p-  160 (305)
                          ....++..+..++.+.  +++++|...|++...     ...+..+..   .+...++.++|++.+++..+.  .| 
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~  207 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPD  207 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSS
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCc
Confidence                1122333333333332  345555555555422     111222221   123334444555555444332  22 


Q ss_pred             CHHHHHHHHHHh----cCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C--------
Q 036263          161 DYLTIISVLNVC----ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R--------  226 (305)
Q Consensus       161 ~~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~--------  226 (305)
                      +..++..+...+    ...++.++|.+.+++..+.. +.+..++..+...|...|++++|...+++..+  |        
T Consensus       208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  286 (472)
T 4g1t_A          208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ  286 (472)
T ss_dssp             CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence            223333222222    23355666777776666654 45566677777777777777777777766542  1        


Q ss_pred             ----------------------------------------------chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 036263          227 ----------------------------------------------TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK  260 (305)
Q Consensus       227 ----------------------------------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  260 (305)
                                                                    +...+..+...|...|++++|.+.|++..+....
T Consensus       287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~  366 (472)
T 4g1t_A          287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT  366 (472)
T ss_dssp             HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence                                                          1123445555666777777777777777664332


Q ss_pred             CCHH--HHHHHHH-HHhccCcHHHHHHHHHHHH
Q 036263          261 TDEV--SFTGALT-ACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       261 p~~~--~~~~li~-~~~~~g~~~~a~~~~~~m~  290 (305)
                      |...  .+..+.. .....|++++|+..|++..
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal  399 (472)
T 4g1t_A          367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV  399 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            2211  1222221 2335677777777776655

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.07  E-value=1.7e-09  Score=92.17  Aligned_cols=193  Identities=13%  Similarity=0.022  Sum_probs=153.3

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhcCc-----------cccHHHHHHHHHcCCChHHHHHHHHHHHHc----CCCC-CH
Q 036263           99 MVSTALLDMYAKFGRMDLATVVFDVMRG-----------CDFWTALLNGFVKRDYFEEALEYFRVMQIS----GVEP-DY  162 (305)
Q Consensus        99 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~  162 (305)
                      ..+..+...+...|++++|...+++...           ...+..+...+...|++++|...+++..+.    +-.| ..
T Consensus        87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  166 (411)
T 4a1s_A           87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG  166 (411)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH
Confidence            5788899999999999999999987744           345888899999999999999999887553    2122 35


Q ss_pred             HHHHHHHHHhcCcCC-----------------hhHHHHHHHHHhhc----CC-CCChhHHHHHHHHHHhcCChHHHHHHH
Q 036263          163 LTIISVLNVCANVRT-----------------LGIGLWMHRYVPKQ----DF-KDNVRVCNTLMDVYSRFGCIEFARQVF  220 (305)
Q Consensus       163 ~t~~~ll~~~~~~~~-----------------~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~  220 (305)
                      .++..+...+...|+                 +++|...+++..+.    +- +.....+..+...|...|++++|...+
T Consensus       167 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  246 (411)
T 4a1s_A          167 RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH  246 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            577888888999999                 99999888876542    21 122457888999999999999999999


Q ss_pred             HhcccC-----c----hhhHHHHHHHHHhcCChHHHHHHHHHHHHCC--CC---CCHHHHHHHHHHHhccCcHHHHHHHH
Q 036263          221 QRMHKR-----T----LVSWNSIIVGFAVNGFVGEALEYFNLMQKGV--FK---TDEVSFTGALTACSHAGLIEDGLQYF  286 (305)
Q Consensus       221 ~~~~~~-----~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~---p~~~~~~~li~~~~~~g~~~~a~~~~  286 (305)
                      ++..+-     +    ..++..+...|...|++++|...+++..+..  ..   ....++..+...+...|++++|..++
T Consensus       247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  326 (411)
T 4a1s_A          247 QERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYH  326 (411)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            988641     1    2378889999999999999999999876531  10   12467888888999999999999999


Q ss_pred             HHHHH
Q 036263          287 DIMKK  291 (305)
Q Consensus       287 ~~m~~  291 (305)
                      +....
T Consensus       327 ~~al~  331 (411)
T 4a1s_A          327 NRHLA  331 (411)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98763

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.06  E-value=5.5e-09  Score=85.23  Aligned_cols=162  Identities=9%  Similarity=-0.003  Sum_probs=112.1

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhc------CC-CC
Q 036263          130 WTALLNGFVKRDYFEEALEYFRVMQIS-------GVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ------DF-KD  195 (305)
Q Consensus       130 ~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~  195 (305)
                      +..+...+...|++++|..++++..+.       .......++..+...+...|++++|...+++..+.      +- +.
T Consensus        30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  109 (311)
T 3nf1_A           30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA  109 (311)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence            555556666666666666666655442       11223556667777777778888887777776553      21 22


Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhccc----------C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHC------C
Q 036263          196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHK----------R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG------V  258 (305)
Q Consensus       196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g  258 (305)
                      ....+..+...|...|++++|...+++..+          + ....+..+...|...|++++|.+++++..+.      +
T Consensus       110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  189 (311)
T 3nf1_A          110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP  189 (311)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence            356677788888888888888888877652          1 3356777888888889999999888887664      2


Q ss_pred             CCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 036263          259 FKT-DEVSFTGALTACSHAGLIEDGLQYFDIMKK  291 (305)
Q Consensus       259 ~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  291 (305)
                      -.| ...++..+...+...|++++|.++++...+
T Consensus       190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            233 335677888889999999999999988873

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.05  E-value=6e-09  Score=84.93  Aligned_cols=184  Identities=10%  Similarity=-0.029  Sum_probs=136.6

Q ss_pred             HHHHHhcCChHHHHHHHHhcCc-----------cccHHHHHHHHHcCCChHHHHHHHHHHHHc----CCCC-CHHHHHHH
Q 036263          105 LDMYAKFGRMDLATVVFDVMRG-----------CDFWTALLNGFVKRDYFEEALEYFRVMQIS----GVEP-DYLTIISV  168 (305)
Q Consensus       105 l~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~l  168 (305)
                      ...|...|++++|...|++...           ..+|+.+...|.+.|++++|...+++..+.    |-.+ -..++..+
T Consensus        44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l  123 (292)
T 1qqe_A           44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (292)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3447778999999998887643           346889999999999999999999877542    2111 14578888


Q ss_pred             HHHhcCc-CChhHHHHHHHHHhhcCCCC-C----hhHHHHHHHHHHhcCChHHHHHHHHhccc--Cc---h-----hhHH
Q 036263          169 LNVCANV-RTLGIGLWMHRYVPKQDFKD-N----VRVCNTLMDVYSRFGCIEFARQVFQRMHK--RT---L-----VSWN  232 (305)
Q Consensus       169 l~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~---~-----~~~~  232 (305)
                      ...|... |++++|...+++..+..... +    ..++..+...|.+.|++++|...|++..+  |+   .     ..|.
T Consensus       124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  203 (292)
T 1qqe_A          124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL  203 (292)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred             HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            8899986 99999999999887642111 1    45688899999999999999999999874  21   1     1567


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHh--ccCcHHHHHHHHHHHH
Q 036263          233 SIIVGFAVNGFVGEALEYFNLMQKGVFKTDE------VSFTGALTACS--HAGLIEDGLQYFDIMK  290 (305)
Q Consensus       233 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~~~~~li~~~~--~~g~~~~a~~~~~~m~  290 (305)
                      .+..++...|++++|...|++..+.  .|+.      ..+..++.++.  ..+++++|...|+.+.
T Consensus       204 ~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~  267 (292)
T 1qqe_A          204 KKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (292)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence            7888899999999999999998763  3432      23445566664  4567888888876553

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.04  E-value=1.2e-08  Score=86.43  Aligned_cols=199  Identities=8%  Similarity=-0.081  Sum_probs=155.5

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC-HhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGT-NPS-HITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVF  121 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~  121 (305)
                      ...+|..+-..+...|++++|+..+++..+.-. .++ ...              ...+++.+..+|...|++++|...|
T Consensus       142 ~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--------------~~~~~~~lg~~~~~~g~~~~A~~~~  207 (383)
T 3ulq_A          142 KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR--------------LLQCHSLFATNFLDLKQYEDAISHF  207 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH--------------HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH--------------HHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            346788899999999999999999998876311 111 110              1234677888899999999999999


Q ss_pred             HhcCc-----------cccHHHHHHHHHcCCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhcCcCChhHHHHHH
Q 036263          122 DVMRG-----------CDFWTALLNGFVKRDYFEEALEYFRVMQIS----GVEP-DYLTIISVLNVCANVRTLGIGLWMH  185 (305)
Q Consensus       122 ~~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~  185 (305)
                      ++..+           ..++..+...+...|++++|...+++..+.    +..| ...++..+...+...|++++|...+
T Consensus       208 ~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  287 (383)
T 3ulq_A          208 QKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYH  287 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            88754           247889999999999999999999987652    3323 4677889999999999999999999


Q ss_pred             HHHhhc----CCCCChhHHHHHHHHHHhcCC---hHHHHHHHHhcccC--chhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263          186 RYVPKQ----DFKDNVRVCNTLMDVYSRFGC---IEFARQVFQRMHKR--TLVSWNSIIVGFAVNGFVGEALEYFNLMQK  256 (305)
Q Consensus       186 ~~~~~~----~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  256 (305)
                      ++..+.    +-+.....+..+...|...|+   +++|..++++....  ....+..+...|...|++++|...+++..+
T Consensus       288 ~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          288 SKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            987653    212223346778888889998   88999999988643  345777889999999999999999998765

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.03  E-value=6.3e-08  Score=85.65  Aligned_cols=193  Identities=11%  Similarity=0.004  Sum_probs=153.0

Q ss_pred             ChhHHHHHHHHHHh-------cCChH-------HHHHHHHhcCc------cccHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 036263           97 NVMVSTALLDMYAK-------FGRMD-------LATVVFDVMRG------CDFWTALLNGFVKRDYFEEALEYFRVMQIS  156 (305)
Q Consensus        97 ~~~~~~~ll~~~~~-------~g~~~-------~a~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  156 (305)
                      +...|..+...+.+       .|+++       +|..+|++...      ...|..++..+.+.|++++|..+|++..+.
T Consensus       271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~  350 (530)
T 2ooe_A          271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI  350 (530)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence            45567777777765       79987       89999998753      345888899999999999999999999874


Q ss_pred             CCCCC--HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHH-HHhcCChHHHHHHHHhccc--C-chhh
Q 036263          157 GVEPD--YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV-YSRFGCIEFARQVFQRMHK--R-TLVS  230 (305)
Q Consensus       157 g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~--~-~~~~  230 (305)
                        .|+  ...|...+..+.+.|+.++|..+|+...+.. +.+...|...... +...|+.++|..+|++..+  | +...
T Consensus       351 --~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~  427 (530)
T 2ooe_A          351 --EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY  427 (530)
T ss_dssp             --SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             --cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHH
Confidence              564  3578888888889999999999999998864 3334444333222 3468999999999998874  4 6788


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Q 036263          231 WNSIIVGFAVNGFVGEALEYFNLMQKGV-FKTD--EVSFTGALTACSHAGLIEDGLQYFDIMKKI  292 (305)
Q Consensus       231 ~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  292 (305)
                      |..++..+.+.|+.++|..+|++....+ ..|+  ...|...+....+.|+.+.+..+++.+.+.
T Consensus       428 ~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~  492 (530)
T 2ooe_A          428 VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  492 (530)
T ss_dssp             HHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999998864 2332  447777788888889999999999988743

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.03  E-value=2.4e-08  Score=78.04  Aligned_cols=169  Identities=10%  Similarity=-0.011  Sum_probs=131.0

Q ss_pred             ccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHH
Q 036263          128 DFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY  207 (305)
Q Consensus       128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  207 (305)
                      ..+......+...|++++|...|++..+..-.++...+..+..++...|++++|...++...+.. +.+...|..+..+|
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~   86 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAY   86 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHH
Confidence            34666777888899999999999988776533677777778888899999999999999988775 45677888899999


Q ss_pred             HhcCChHHHHHHHHhccc--C-ch-------hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHh
Q 036263          208 SRFGCIEFARQVFQRMHK--R-TL-------VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD---EVSFTGALTACS  274 (305)
Q Consensus       208 ~~~g~~~~a~~~~~~~~~--~-~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~  274 (305)
                      ...|++++|...+++..+  | +.       ..|..+...+...|++++|.+.|++..+.  .|+   ...+..+..++.
T Consensus        87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~  164 (228)
T 4i17_A           87 RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFY  164 (228)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHH
Confidence            999999999999988874  3 33       45777788888899999999999998874  465   466777777777


Q ss_pred             ccCcH-HHH-----------------------HHHHHHHHHHhCCCCCc
Q 036263          275 HAGLI-EDG-----------------------LQYFDIMKKIYRVSPQI  299 (305)
Q Consensus       275 ~~g~~-~~a-----------------------~~~~~~m~~~~~~~p~~  299 (305)
                      ..|+. -+.                       .+....+.+...+.|+.
T Consensus       165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~  213 (228)
T 4i17_A          165 NNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNR  213 (228)
T ss_dssp             HHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            77665 111                       67777777667777664

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.01  E-value=5.7e-09  Score=85.85  Aligned_cols=231  Identities=12%  Similarity=-0.008  Sum_probs=175.4

Q ss_pred             hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 036263           45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM  124 (305)
Q Consensus        45 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~  124 (305)
                      ...+...-..+...|++++|...|+++.+.  .|+.....             ...+..+...+...|++++|...+++.
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~a   69 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTL-------------SAIYSQLGNAYFYLHDYAKALEYHHHD   69 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHH-------------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhh--CcccHHHH-------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344555667888999999999999999885  34321110             133566777899999999999999876


Q ss_pred             Cc-----------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhcCcCC-----------
Q 036263          125 RG-----------CDFWTALLNGFVKRDYFEEALEYFRVMQISGV-EPD----YLTIISVLNVCANVRT-----------  177 (305)
Q Consensus       125 ~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~-----------  177 (305)
                      ..           ...+..+...+...|++++|...+++..+... .++    ..++..+...+...|+           
T Consensus        70 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  149 (338)
T 3ro2_A           70 LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTG  149 (338)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC---
T ss_pred             HHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhh
Confidence            43           44578888999999999999999988754210 112    4477888888899999           


Q ss_pred             ---------hhHHHHHHHHHhhc----CC-CCChhHHHHHHHHHHhcCChHHHHHHHHhccc-----C----chhhHHHH
Q 036263          178 ---------LGIGLWMHRYVPKQ----DF-KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK-----R----TLVSWNSI  234 (305)
Q Consensus       178 ---------~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~----~~~~~~~l  234 (305)
                               +++|...+++..+.    +. +.....+..+...|...|++++|...+++..+     +    ...++..+
T Consensus       150 ~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  229 (338)
T 3ro2_A          150 EFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNL  229 (338)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence                     89999888876542    21 12245788889999999999999999998763     1    23478888


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCC----CCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          235 IVGFAVNGFVGEALEYFNLMQKGV----FKT-DEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       235 i~~~~~~g~~~~a~~~~~~m~~~g----~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      ...+...|++++|...+++..+..    -.+ ...++..+...+...|++++|...++...
T Consensus       230 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  290 (338)
T 3ro2_A          230 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL  290 (338)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            999999999999999999876531    111 14677788889999999999999999876

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.00  E-value=5.6e-09  Score=88.56  Aligned_cols=194  Identities=11%  Similarity=-0.036  Sum_probs=152.2

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhcCc-----------cccHHHHHHHHHcCCChHHHHHHHHHHHHc----CCCC-C
Q 036263           98 VMVSTALLDMYAKFGRMDLATVVFDVMRG-----------CDFWTALLNGFVKRDYFEEALEYFRVMQIS----GVEP-D  161 (305)
Q Consensus        98 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~  161 (305)
                      ..++..+...+...|++++|...+++...           ...+..+...+...|++++|...+++..+.    +-.+ .
T Consensus        47 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  126 (406)
T 3sf4_A           47 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE  126 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccch
Confidence            35788899999999999999999987633           445788889999999999999999887543    1111 1


Q ss_pred             HHHHHHHHHHhcCcCC--------------------hhHHHHHHHHHhhc----CCC-CChhHHHHHHHHHHhcCChHHH
Q 036263          162 YLTIISVLNVCANVRT--------------------LGIGLWMHRYVPKQ----DFK-DNVRVCNTLMDVYSRFGCIEFA  216 (305)
Q Consensus       162 ~~t~~~ll~~~~~~~~--------------------~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~a  216 (305)
                      ..++..+...+...|+                    +++|...++...+.    +.. ....++..+...|...|++++|
T Consensus       127 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  206 (406)
T 3sf4_A          127 ARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA  206 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHH
T ss_pred             HHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHH
Confidence            4578888888999999                    99999888876542    211 1245788889999999999999


Q ss_pred             HHHHHhccc-----Cc----hhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCcHHHH
Q 036263          217 RQVFQRMHK-----RT----LVSWNSIIVGFAVNGFVGEALEYFNLMQKG----VFKT-DEVSFTGALTACSHAGLIEDG  282 (305)
Q Consensus       217 ~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a  282 (305)
                      ...+++..+     ++    ..++..+...|...|++++|...+++..+.    +-.+ ...++..+...+...|++++|
T Consensus       207 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  286 (406)
T 3sf4_A          207 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA  286 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHH
Confidence            999998863     11    247888999999999999999999987653    1111 146778888899999999999


Q ss_pred             HHHHHHHHH
Q 036263          283 LQYFDIMKK  291 (305)
Q Consensus       283 ~~~~~~m~~  291 (305)
                      ...++....
T Consensus       287 ~~~~~~a~~  295 (406)
T 3sf4_A          287 IDYHLKHLA  295 (406)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998773

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.98  E-value=5.4e-08  Score=78.82  Aligned_cols=160  Identities=11%  Similarity=0.016  Sum_probs=119.3

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhc-------CccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-----CHHH
Q 036263           97 NVMVSTALLDMYAKFGRMDLATVVFDVM-------RGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-----DYLT  164 (305)
Q Consensus        97 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~-------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----~~~t  164 (305)
                      +......+..++...|++++|++++++.       .....+..++..+.+.|+.+.|.+.++.|.+.  .|     +..+
T Consensus        99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~  176 (310)
T 3mv2_B           99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEM  176 (310)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHH
Confidence            3344456677788899999999999988       23556778889999999999999999999774  66     3566


Q ss_pred             HHHHHHHh--c--CcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc------------C-c
Q 036263          165 IISVLNVC--A--NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK------------R-T  227 (305)
Q Consensus       165 ~~~ll~~~--~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~------------~-~  227 (305)
                      ...+..++  .  ..++..+|..+|+++.+.  .|+..+...++.++.+.|++++|++.++.+.+            | |
T Consensus       177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~  254 (310)
T 3mv2_B          177 ILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK  254 (310)
T ss_dssp             HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSH
T ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCC
Confidence            66666553  2  334899999999998665  35544445555689999999999999987543            2 5


Q ss_pred             hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 036263          228 LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV  264 (305)
Q Consensus       228 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~  264 (305)
                      ..+...+|......|+  +|.+++.++.+.  .|+..
T Consensus       255 ~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp  287 (310)
T 3mv2_B          255 PTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHA  287 (310)
T ss_dssp             HHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCH
T ss_pred             HHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCCh
Confidence            5666566666666776  888999999884  46543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.97  E-value=4.9e-08  Score=82.50  Aligned_cols=199  Identities=10%  Similarity=-0.034  Sum_probs=152.7

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC-HhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGT-NPS-HITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVF  121 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~  121 (305)
                      ...+|..+-..+...|+++.|+..+++..+... .++ ...              ...+++.+..+|...|++++|...|
T Consensus       140 ~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~--------------~~~~~~~lg~~y~~~~~~~~A~~~~  205 (378)
T 3q15_A          140 KAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR--------------TIQSLFVIAGNYDDFKHYDKALPHL  205 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHH--------------HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhh--------------HHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            346788888999999999999999998876311 111 110              1234677888899999999999999


Q ss_pred             HhcCc-----------cccHHHHHHHHHcCCChHHHHHHHHHHHHc----CCCCCHHHHHHHHHHhcCcCChhHHHHHHH
Q 036263          122 DVMRG-----------CDFWTALLNGFVKRDYFEEALEYFRVMQIS----GVEPDYLTIISVLNVCANVRTLGIGLWMHR  186 (305)
Q Consensus       122 ~~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~  186 (305)
                      ++..+           ..+++.+...+...|++++|...+++..+.    +-+....++..+...+.+.|++++|...++
T Consensus       206 ~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  285 (378)
T 3q15_A          206 EAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIE  285 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            87744           346888999999999999999999987651    222336778889999999999999999999


Q ss_pred             HHhhcC----CCCChhHHHHHHHHHHhcCC---hHHHHHHHHhcccC--chhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263          187 YVPKQD----FKDNVRVCNTLMDVYSRFGC---IEFARQVFQRMHKR--TLVSWNSIIVGFAVNGFVGEALEYFNLMQK  256 (305)
Q Consensus       187 ~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  256 (305)
                      +..+..    -+.....+..+...|...++   +.+|...+++....  ....+..+...|...|++++|...|++..+
T Consensus       286 ~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          286 EGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            987642    22234456667777778888   88899999886532  335667888999999999999999998764

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.95  E-value=3.6e-08  Score=78.73  Aligned_cols=159  Identities=9%  Similarity=-0.009  Sum_probs=112.0

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhcCc--------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCC-CCC-HHHHHH
Q 036263           98 VMVSTALLDMYAKFGRMDLATVVFDVMRG--------CDFWTALLNGFVKRDYFEEALEYFRVMQISGV-EPD-YLTIIS  167 (305)
Q Consensus        98 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~-~~t~~~  167 (305)
                      ...+-.+...+.+.|++++|...|+.+..        ...+..+..++.+.|++++|...|++..+... .|. ...+..
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~   94 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE   94 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence            34455566678888999999999988854        23467778888999999999999998877521 122 445666


Q ss_pred             HHHHhcC--------cCChhHHHHHHHHHhhcCCCCChhHH-----------------HHHHHHHHhcCChHHHHHHHHh
Q 036263          168 VLNVCAN--------VRTLGIGLWMHRYVPKQDFKDNVRVC-----------------NTLMDVYSRFGCIEFARQVFQR  222 (305)
Q Consensus       168 ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~li~~~~~~g~~~~a~~~~~~  222 (305)
                      +..++..        .|++++|...|+++.+.. +.+....                 ..+...|.+.|++++|...|++
T Consensus        95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  173 (261)
T 3qky_A           95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA  173 (261)
T ss_dssp             HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            6677777        889999999999888764 3333333                 4456677778888888888877


Q ss_pred             ccc--Cc----hhhHHHHHHHHHhc----------CChHHHHHHHHHHHHC
Q 036263          223 MHK--RT----LVSWNSIIVGFAVN----------GFVGEALEYFNLMQKG  257 (305)
Q Consensus       223 ~~~--~~----~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~  257 (305)
                      +.+  |+    ...+..+..+|...          |++++|...|++..+.
T Consensus       174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            753  32    24566666666655          7777888888777764

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.95  E-value=1e-07  Score=84.34  Aligned_cols=193  Identities=10%  Similarity=0.043  Sum_probs=149.1

Q ss_pred             chHhHHHHHHHHHh-------cCChh-------HHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHH
Q 036263           44 TTVQWTSSISRHCR-------SGCIL-------EAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYA  109 (305)
Q Consensus        44 ~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~  109 (305)
                      +...|......+.+       .|+++       +|..+|++..+. +.|+                 +...|..++..+.
T Consensus       271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~-----------------~~~l~~~~~~~~~  332 (530)
T 2ooe_A          271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKK-----------------NMLLYFAYADYEE  332 (530)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSS-----------------CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcc-----------------cHHHHHHHHHHHH
Confidence            45667777777765       68887       889999888752 2343                 2344566777788


Q ss_pred             hcCChHHHHHHHHhcCc------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHH-hcCcCChhHH
Q 036263          110 KFGRMDLATVVFDVMRG------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD-YLTIISVLNV-CANVRTLGIG  181 (305)
Q Consensus       110 ~~g~~~~a~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~-~~~~~~~~~a  181 (305)
                      +.|++++|..+|+++..      ...|..++..+.+.|++++|.++|++..+.  .|+ ...|...... +...|+.++|
T Consensus       333 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A  410 (530)
T 2ooe_A          333 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVA  410 (530)
T ss_dssp             HTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHH
T ss_pred             hcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHH
Confidence            99999999999998844      136888888888999999999999998764  332 3333322222 3358999999


Q ss_pred             HHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccC---c----hhhHHHHHHHHHhcCChHHHHHHHHHH
Q 036263          182 LWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKR---T----LVSWNSIIVGFAVNGFVGEALEYFNLM  254 (305)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~----~~~~~~li~~~~~~g~~~~a~~~~~~m  254 (305)
                      ..+|+...+.. +.+...|..++..+.+.|+.++|..+|++....   +    ...|...+......|+.+.+..+++++
T Consensus       411 ~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~  489 (530)
T 2ooe_A          411 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  489 (530)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999998874 556889999999999999999999999998742   2    347888888888999999999999998


Q ss_pred             HHC
Q 036263          255 QKG  257 (305)
Q Consensus       255 ~~~  257 (305)
                      .+.
T Consensus       490 ~~~  492 (530)
T 2ooe_A          490 FTA  492 (530)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            874

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.92  E-value=5.7e-07  Score=78.00  Aligned_cols=148  Identities=13%  Similarity=0.038  Sum_probs=90.8

Q ss_pred             CChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCc----------
Q 036263          112 GRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANV----------  175 (305)
Q Consensus       112 g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~----------  175 (305)
                      |+.++|.+.+++...     ..++..+...+...|++++|...+++..+.  .| +..++..+...|...          
T Consensus       227 ~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~  304 (472)
T 4g1t_A          227 EEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLREN  304 (472)
T ss_dssp             ---CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             hHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            344555555554422     334666666777777777777777766553  34 344555554444321          


Q ss_pred             ---------CChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--Cchh----hHHHHHH-HHH
Q 036263          176 ---------RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RTLV----SWNSIIV-GFA  239 (305)
Q Consensus       176 ---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~----~~~~li~-~~~  239 (305)
                               +..+.|...++...+.+ +.+...+..+...|...|++++|...|++..+  ++..    .+..+.. .+.
T Consensus       305 ~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~  383 (472)
T 4g1t_A          305 GMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLY  383 (472)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence                     12344555565555554 44556677888899999999999999998763  3221    2222222 345


Q ss_pred             hcCChHHHHHHHHHHHHCCCCCCHH
Q 036263          240 VNGFVGEALEYFNLMQKGVFKTDEV  264 (305)
Q Consensus       240 ~~g~~~~a~~~~~~m~~~g~~p~~~  264 (305)
                      ..|++++|...|++..+  +.|+..
T Consensus       384 ~~~~~~~Ai~~y~kal~--i~~~~~  406 (472)
T 4g1t_A          384 QMKCEDKAIHHFIEGVK--INQKSR  406 (472)
T ss_dssp             TSSCHHHHHHHHHHHHH--SCCCCH
T ss_pred             HCCCHHHHHHHHHHHHh--cCcccH
Confidence            78999999999999888  556643

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.92  E-value=1e-07  Score=73.41  Aligned_cols=159  Identities=9%  Similarity=0.019  Sum_probs=111.7

Q ss_pred             HHHHHHhcCChHHHHHHHHhcCc-----cccHHH----------------HHHHHHcCCChHHHHHHHHHHHHcCCCC-C
Q 036263          104 LLDMYAKFGRMDLATVVFDVMRG-----CDFWTA----------------LLNGFVKRDYFEEALEYFRVMQISGVEP-D  161 (305)
Q Consensus       104 ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~----------------li~~~~~~g~~~~a~~~~~~m~~~g~~p-~  161 (305)
                      ....+.+.|++++|...|++...     ...|..                +...+.+.|++++|...|++..+.  .| +
T Consensus        10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~   87 (208)
T 3urz_A           10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--APNN   87 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCC
Confidence            34456778999999999888754     334555                778888888888888888887764  44 5


Q ss_pred             HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC--hHHHHHHHHhcccCchh--hHHHHHHH
Q 036263          162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC--IEFARQVFQRMHKRTLV--SWNSIIVG  237 (305)
Q Consensus       162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~--~~~~li~~  237 (305)
                      ...+..+...+...|++++|...|++..+.. +.+...+..+..+|...|+  ...+...++....++..  .+.....+
T Consensus        88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~  166 (208)
T 3urz_A           88 VDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLS  166 (208)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence            7778888888888888888888888888875 5567778887777765543  44556666666655443  33344555


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 036263          238 FAVNGFVGEALEYFNLMQKGVFKTDEVSFT  267 (305)
Q Consensus       238 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~  267 (305)
                      +...|++++|...|++..+  ..|+.....
T Consensus       167 ~~~~~~~~~A~~~~~~al~--l~P~~~~~~  194 (208)
T 3urz_A          167 KLFTTRYEKARNSLQKVIL--RFPSTEAQK  194 (208)
T ss_dssp             HHHHHTHHHHHHHHHHHTT--TSCCHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHH--hCCCHHHHH
Confidence            6667888888888888877  457654433

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.88  E-value=2.3e-07  Score=74.02  Aligned_cols=161  Identities=9%  Similarity=-0.018  Sum_probs=127.6

Q ss_pred             cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCC--CCChhHHHH
Q 036263          129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPD----YLTIISVLNVCANVRTLGIGLWMHRYVPKQDF--KDNVRVCNT  202 (305)
Q Consensus       129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~  202 (305)
                      .+..+...+.+.|++++|...|++..+.  .|+    ...+..+..++...|++++|...|+...+...  +.....+..
T Consensus        17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~   94 (261)
T 3qky_A           17 EAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE   94 (261)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence            3556677888999999999999999875  343    56788888999999999999999999988741  122456778


Q ss_pred             HHHHHHh--------cCChHHHHHHHHhccc--Cc-hhhH-----------------HHHHHHHHhcCChHHHHHHHHHH
Q 036263          203 LMDVYSR--------FGCIEFARQVFQRMHK--RT-LVSW-----------------NSIIVGFAVNGFVGEALEYFNLM  254 (305)
Q Consensus       203 li~~~~~--------~g~~~~a~~~~~~~~~--~~-~~~~-----------------~~li~~~~~~g~~~~a~~~~~~m  254 (305)
                      +..++..        .|++++|...|+++.+  |+ ....                 ..+...|...|++++|...|++.
T Consensus        95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  174 (261)
T 3qky_A           95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAV  174 (261)
T ss_dssp             HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            8888888        9999999999999874  32 2333                 45678899999999999999999


Q ss_pred             HHCCCCC--CHHHHHHHHHHHhcc----------CcHHHHHHHHHHHHH
Q 036263          255 QKGVFKT--DEVSFTGALTACSHA----------GLIEDGLQYFDIMKK  291 (305)
Q Consensus       255 ~~~g~~p--~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~  291 (305)
                      .+.....  ....+..+..++...          |++++|...|+.+.+
T Consensus       175 l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~  223 (261)
T 3qky_A          175 FDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ  223 (261)
T ss_dssp             HHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence            8853211  235677777788766          899999999999883

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.88  E-value=8.2e-08  Score=71.87  Aligned_cols=149  Identities=13%  Similarity=0.036  Sum_probs=72.2

Q ss_pred             HHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hcCcC
Q 036263          103 ALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNV-CANVR  176 (305)
Q Consensus       103 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~  176 (305)
                      .+...+.+.|++++|...|++...     ...+..+...+...|++++|...+++....  .|+...+...... +...+
T Consensus        11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~   88 (176)
T 2r5s_A           11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQA   88 (176)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhhc
Confidence            334445566666666666666543     334555666666666666666666655432  2222221111101 11111


Q ss_pred             ChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--Cc---hhhHHHHHHHHHhcCChHHHHHHH
Q 036263          177 TLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RT---LVSWNSIIVGFAVNGFVGEALEYF  251 (305)
Q Consensus       177 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~---~~~~~~li~~~~~~g~~~~a~~~~  251 (305)
                      ....+...++...+.. +.+...+..+..++...|++++|...|+++.+  |+   ...+..+...+...|+.++|...|
T Consensus        89 ~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y  167 (176)
T 2r5s_A           89 AESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY  167 (176)
T ss_dssp             TSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred             ccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence            2223444555554443 33345555555555555555555555555442  21   234555555555555555555555


Q ss_pred             HHH
Q 036263          252 NLM  254 (305)
Q Consensus       252 ~~m  254 (305)
                      ++.
T Consensus       168 ~~a  170 (176)
T 2r5s_A          168 RRQ  170 (176)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.87  E-value=8.9e-08  Score=73.81  Aligned_cols=160  Identities=9%  Similarity=-0.011  Sum_probs=121.5

Q ss_pred             HHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHH----------------HHHHhcCcCChhHHHHHHHHHhhcCCCC
Q 036263          133 LLNGFVKRDYFEEALEYFRVMQISGVEPD-YLTIIS----------------VLNVCANVRTLGIGLWMHRYVPKQDFKD  195 (305)
Q Consensus       133 li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~----------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~  195 (305)
                      ....+...|++++|...|++..+.  .|+ ...+..                +..++...|++++|...+++..+.. +-
T Consensus        10 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~   86 (208)
T 3urz_A           10 KVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PN   86 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CC
Confidence            445677899999999999998774  564 445556                8888999999999999999999886 66


Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036263          196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGF--VGEALEYFNLMQKGVFKTDEVSFTGAL  270 (305)
Q Consensus       196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~li  270 (305)
                      +...+..+..+|...|++++|...|++..+  | +...|..+...|...|+  .+.+...++....  ..|....+....
T Consensus        87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g  164 (208)
T 3urz_A           87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDG  164 (208)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHH
Confidence            788999999999999999999999999874  4 66788888888766654  3445555555432  233333444455


Q ss_pred             HHHhccCcHHHHHHHHHHHHHHhCCCCCcc
Q 036263          271 TACSHAGLIEDGLQYFDIMKKIYRVSPQIE  300 (305)
Q Consensus       271 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~  300 (305)
                      .++...|++++|...|+...   .+.|+.+
T Consensus       165 ~~~~~~~~~~~A~~~~~~al---~l~P~~~  191 (208)
T 3urz_A          165 LSKLFTTRYEKARNSLQKVI---LRFPSTE  191 (208)
T ss_dssp             HHHHHHHTHHHHHHHHHHHT---TTSCCHH
T ss_pred             HHHHHccCHHHHHHHHHHHH---HhCCCHH
Confidence            56677899999999999887   6667643

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.85  E-value=2.6e-07  Score=72.07  Aligned_cols=173  Identities=8%  Similarity=-0.039  Sum_probs=101.3

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhcCc--------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH----HHHH
Q 036263           99 MVSTALLDMYAKFGRMDLATVVFDVMRG--------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDY----LTII  166 (305)
Q Consensus        99 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~  166 (305)
                      ..+..+...+.+.|++++|...|+++..        ...+..+..++.+.|++++|...|++..+.  .|+.    ..+.
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~   82 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY   82 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence            3444555666677777777777776643        124556666777777777777777776654  2321    1232


Q ss_pred             HHHHHhc------------------CcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCch
Q 036263          167 SVLNVCA------------------NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTL  228 (305)
Q Consensus       167 ~ll~~~~------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  228 (305)
                      .+..++.                  ..|+.++|...|+.+.+.. +-+...+.......              .+.....
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~--------------~~~~~~~  147 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV--------------FLKDRLA  147 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH--------------HHHHHHH
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH--------------HHHHHHH
Confidence            2333332                  2345555555555555442 22222221111100              0000000


Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD----EVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       229 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      .....+...|...|++++|...|+++.+..  |+    ...+..+..++.+.|++++|.+.++.+.
T Consensus       148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~  211 (225)
T 2yhc_A          148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA  211 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            111345667889999999999999998853  43    2567788899999999999999999887

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.84  E-value=2.7e-07  Score=75.09  Aligned_cols=160  Identities=8%  Similarity=-0.001  Sum_probs=118.5

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHcC-CCCCH----HHHHHHHHHhcCcCChhHHHHHHHHHhhcCCC-CC----hhHHH
Q 036263          132 ALLNGFVKRDYFEEALEYFRVMQISG-VEPDY----LTIISVLNVCANVRTLGIGLWMHRYVPKQDFK-DN----VRVCN  201 (305)
Q Consensus       132 ~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~  201 (305)
                      ..+..+...|++++|..++++..+.. ..|+.    ..+..+...+...+++++|...++...+.... ++    ..+++
T Consensus        80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 3u3w_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            34667888899999999998876532 22332    23345667777888999999999988774322 22    33688


Q ss_pred             HHHHHHHhcCChHHHHHHHHhccc------C----chhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHH
Q 036263          202 TLMDVYSRFGCIEFARQVFQRMHK------R----TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG----VFKTD-EVSF  266 (305)
Q Consensus       202 ~li~~~~~~g~~~~a~~~~~~~~~------~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~  266 (305)
                      .+..+|...|++++|...|+++.+      .    ...+|..+...|...|++++|.+.+++..+.    +..+. ..+|
T Consensus       160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~  239 (293)
T 3u3w_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            899999999999999999888762      1    2347888899999999999999998886542    32232 5778


Q ss_pred             HHHHHHHhccC-cHHHHHHHHHHHHH
Q 036263          267 TGALTACSHAG-LIEDGLQYFDIMKK  291 (305)
Q Consensus       267 ~~li~~~~~~g-~~~~a~~~~~~m~~  291 (305)
                      ..+..++.+.| .+++|.+.++....
T Consensus       240 ~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          240 YQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            88888999999 46999998887763

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.84  E-value=3.4e-08  Score=90.08  Aligned_cols=164  Identities=5%  Similarity=-0.100  Sum_probs=137.6

Q ss_pred             HhcCChHHHHHHHHhcC--------c-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcC
Q 036263          109 AKFGRMDLATVVFDVMR--------G-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCAN  174 (305)
Q Consensus       109 ~~~g~~~~a~~~~~~~~--------~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~  174 (305)
                      ...|++++|++.+++..        .     ...+..+...+...|++++|.+.|++..+.  .| +...+..+-.++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence            67899999999998876        2     456888889999999999999999998875  44 57788889999999


Q ss_pred             cCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHH
Q 036263          175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYF  251 (305)
Q Consensus       175 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~  251 (305)
                      .|++++|...|++..+.. +.+...|..+..+|.+.|++++ .+.|++..+  | +...|..+..++...|++++|.+.|
T Consensus       480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~  557 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL  557 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999886 5578889999999999999999 999999874  3 6688999999999999999999999


Q ss_pred             HHHHHCCCCCC-HHHHHHHHHHHhccCc
Q 036263          252 NLMQKGVFKTD-EVSFTGALTACSHAGL  278 (305)
Q Consensus       252 ~~m~~~g~~p~-~~~~~~li~~~~~~g~  278 (305)
                      ++..+.  .|+ ...+..+..++...++
T Consensus       558 ~~al~l--~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          558 DEVPPT--SRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HTSCTT--STTHHHHHHHHHHHTC----
T ss_pred             Hhhccc--CcccHHHHHHHHHHHHccCC
Confidence            998874  465 4567777777766554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.83  E-value=1.1e-06  Score=71.11  Aligned_cols=170  Identities=8%  Similarity=-0.047  Sum_probs=121.1

Q ss_pred             HHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhcCcCChhHHHHHHHHHhh
Q 036263          117 ATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVE-PDYLTIISVLNVCANVRTLGIGLWMHRYVPK  190 (305)
Q Consensus       117 a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~  190 (305)
                      |...|++...     ...+..+..++...|++++|++++.+....|-. -+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            5666666543     223456778888899999999999987655432 3567788889999999999999999999977


Q ss_pred             cCCCC-----ChhHHHHHHHH--HHh--cCChHHHHHHHHhcccC--chhhHHHHHHHHHhcCChHHHHHHHHHHHHC--
Q 036263          191 QDFKD-----NVRVCNTLMDV--YSR--FGCIEFARQVFQRMHKR--TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG--  257 (305)
Q Consensus       191 ~~~~~-----~~~~~~~li~~--~~~--~g~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--  257 (305)
                      .  .|     +..+...+..+  ...  .++.++|..+|+++.+.  +..+-..++.++...|++++|.+.++.+.+.  
T Consensus       165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p  242 (310)
T 3mv2_B          165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY  242 (310)
T ss_dssp             H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred             c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            6  45     34555555555  333  34899999999998753  3234445555899999999999999876553  


Q ss_pred             ---C----CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          258 ---V----FKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       258 ---g----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                         +    -+-|..++..+|......|+  +|.++++++.
T Consensus       243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~  280 (310)
T 3mv2_B          243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLV  280 (310)
T ss_dssp             HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHH
T ss_pred             cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHH
Confidence               1    02356677555555555676  8888888887

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.82  E-value=1.5e-07  Score=83.98  Aligned_cols=145  Identities=7%  Similarity=-0.099  Sum_probs=104.0

Q ss_pred             cCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHH
Q 036263          111 FGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWM  184 (305)
Q Consensus       111 ~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~  184 (305)
                      .|++++|...|++..+     ...|..+...+...|++++|.+.+++..+.  .| +...+..+...+...|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            3677888888887754     455778888888888999999888887764  44 467788888888888999999988


Q ss_pred             HHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhc---CChHHHHHHHHHHHHCC
Q 036263          185 HRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVN---GFVGEALEYFNLMQKGV  258 (305)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~g  258 (305)
                      +++..+.. +.+...+..+..+|.+.|++++|.+.|++..+   .+...+..+...+...   |++++|.+.+++..+.+
T Consensus        80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A           80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence            88888775 55677888888888888999999888888763   3567788888888888   88888888888887754

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.82  E-value=7.5e-08  Score=87.78  Aligned_cols=167  Identities=10%  Similarity=-0.049  Sum_probs=135.0

Q ss_pred             HhcCChhHHHHHHHHHHhC------CCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc---
Q 036263           56 CRSGCILEAALEFTRMRLY------GTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG---  126 (305)
Q Consensus        56 ~~~~~~~~a~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---  126 (305)
                      ...|++++|++.|++..+.      ...|+                 +...+..+..++.+.|++++|...|+++..   
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~-----------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p  464 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSE-----------------SVELPLMEVRALLDLGDVAKATRKLDDLAERVG  464 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTT-----------------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccccc-----------------chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence            6789999999999998721      12333                 334456667778999999999999998855   


Q ss_pred             --cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHH
Q 036263          127 --CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTL  203 (305)
Q Consensus       127 --~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  203 (305)
                        ...|..+...+...|++++|.+.|++..+.  .| +...+..+..++...|++++ ...|++..+.+ +.+...|..+
T Consensus       465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~l  540 (681)
T 2pzi_A          465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGL  540 (681)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHH
Confidence              456888889999999999999999998775  45 56778889999999999999 99999999876 5678899999


Q ss_pred             HHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCC
Q 036263          204 MDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGF  243 (305)
Q Consensus       204 i~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~  243 (305)
                      ..+|.+.|++++|.+.|++..+  | +...|..+..++...++
T Consensus       541 g~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          541 ARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence            9999999999999999999985  3 35677777777766554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.81  E-value=2.8e-07  Score=71.88  Aligned_cols=140  Identities=11%  Similarity=0.032  Sum_probs=97.0

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhcCc-----c---ccHHHHHHHHHc------------------CCChHHHHHHHHH
Q 036263           99 MVSTALLDMYAKFGRMDLATVVFDVMRG-----C---DFWTALLNGFVK------------------RDYFEEALEYFRV  152 (305)
Q Consensus        99 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~---~~~~~li~~~~~------------------~g~~~~a~~~~~~  152 (305)
                      ..+..+..++.+.|++++|...|+++.+     .   ..+..+..++..                  .|++++|...|++
T Consensus        42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  121 (225)
T 2yhc_A           42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSK  121 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHH
Confidence            5678888999999999999999998854     1   134444444443                  5789999999999


Q ss_pred             HHHcCCCCCHH-HHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--Cch-
Q 036263          153 MQISGVEPDYL-TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RTL-  228 (305)
Q Consensus       153 m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~-  228 (305)
                      ..+.  .|+.. .......          ...+...+        ......+...|.+.|++++|...|+++.+  |+. 
T Consensus       122 ~l~~--~P~~~~a~~a~~~----------l~~~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~  181 (225)
T 2yhc_A          122 LVRG--YPNSQYTTDATKR----------LVFLKDRL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQ  181 (225)
T ss_dssp             HHTT--CTTCTTHHHHHHH----------HHHHHHHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSH
T ss_pred             HHHH--CcCChhHHHHHHH----------HHHHHHHH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCC
Confidence            8774  45432 2211110          00111111        11223556788899999999999999874  332 


Q ss_pred             ---hhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 036263          229 ---VSWNSIIVGFAVNGFVGEALEYFNLMQKGV  258 (305)
Q Consensus       229 ---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  258 (305)
                         ..+..+..+|.+.|++++|.+.++.+...+
T Consensus       182 ~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          182 ATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence               467888999999999999999999988764

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.81  E-value=5.2e-07  Score=75.84  Aligned_cols=227  Identities=11%  Similarity=0.006  Sum_probs=163.3

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc---
Q 036263           50 SSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG---  126 (305)
Q Consensus        50 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---  126 (305)
                      ..-..+...|++++|...+++.....-..+....              ...+..+...+...|++++|...+++...   
T Consensus        19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~   84 (373)
T 1hz4_A           19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSR--------------IVATSVLGEVLHCKGELTRSLALMQQTEQMAR   84 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHH--------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHH--------------HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            3344566789999999999998875311111111              12235566778889999999999988754   


Q ss_pred             --------cccHHHHHHHHHcCCChHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhc
Q 036263          127 --------CDFWTALLNGFVKRDYFEEALEYFRVMQIS----GVE--P-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQ  191 (305)
Q Consensus       127 --------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~  191 (305)
                              ..++..+...+...|++++|...+++..+.    +..  | ....+..+...+...|++++|...+++..+.
T Consensus        85 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  164 (373)
T 1hz4_A           85 QHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV  164 (373)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence                    122566778899999999999999887543    222  3 2445667778889999999999999988764


Q ss_pred             CCC----CChhHHHHHHHHHHhcCChHHHHHHHHhccc----Cch-hhHH-----HHHHHHHhcCChHHHHHHHHHHHHC
Q 036263          192 DFK----DNVRVCNTLMDVYSRFGCIEFARQVFQRMHK----RTL-VSWN-----SIIVGFAVNGFVGEALEYFNLMQKG  257 (305)
Q Consensus       192 ~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~  257 (305)
                      ...    .....+..+...+...|++++|...+++...    ++. ..+.     ..+..+...|++++|...+++....
T Consensus       165 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  244 (373)
T 1hz4_A          165 LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP  244 (373)
T ss_dssp             TTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred             hhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence            321    1245678888999999999999999998752    211 1222     2334477999999999999998764


Q ss_pred             CCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          258 VFKT---DEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       258 g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      ...+   ....+..+...+...|++++|...++...
T Consensus       245 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~  280 (373)
T 1hz4_A          245 EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN  280 (373)
T ss_dssp             CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3221   12356677788999999999999999876

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.81  E-value=3.7e-07  Score=70.22  Aligned_cols=122  Identities=11%  Similarity=-0.014  Sum_probs=80.8

Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc
Q 036263          131 TALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF  210 (305)
Q Consensus       131 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  210 (305)
                      ..+...+...|++++|...|++.    +.|+...+..+...+...|++++|...++...+.. +.+...+..+..+|...
T Consensus        10 ~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~   84 (213)
T 1hh8_A           10 WNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT   84 (213)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence            34455566667777777666654    24566666677777777777777777777766654 44566677777777777


Q ss_pred             CChHHHHHHHHhccc--C-----------------chhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263          211 GCIEFARQVFQRMHK--R-----------------TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG  257 (305)
Q Consensus       211 g~~~~a~~~~~~~~~--~-----------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  257 (305)
                      |++++|...|++..+  |                 ....+..+..+|...|++++|.+.|++..+.
T Consensus        85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            777777777776653  1                 1256667777777777777777777777664

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.78  E-value=1.2e-05  Score=69.68  Aligned_cols=35  Identities=9%  Similarity=-0.160  Sum_probs=22.2

Q ss_pred             chHhHHHHHHHHHhcC-----ChhHHHHHHHHHHhCCCCC
Q 036263           44 TTVQWTSSISRHCRSG-----CILEAALEFTRMRLYGTNP   78 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~g~~p   78 (305)
                      +...+..+-..+...+     ++++|+..|++..+.|...
T Consensus        68 ~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~  107 (452)
T 3e4b_A           68 SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN  107 (452)
T ss_dssp             ---CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS
T ss_pred             CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH
Confidence            5556666666555555     7789999999988876433

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.78  E-value=3.3e-07  Score=75.13  Aligned_cols=211  Identities=9%  Similarity=-0.012  Sum_probs=148.2

Q ss_pred             cCChhHHHHHHHHHHhCCC------CCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc-----
Q 036263           58 SGCILEAALEFTRMRLYGT------NPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG-----  126 (305)
Q Consensus        58 ~~~~~~a~~~~~~m~~~g~------~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----  126 (305)
                      .|++++|.+++++..+..-      .++   |...           ...|......|...|++++|...|.+...     
T Consensus         4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~---~~~A-----------~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~   69 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLKTSFMKWKPD---YDSA-----------ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN   69 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCSSSCSCC---HHHH-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             cchHHHHHHHHHHHHHHccccccCCCCC---HHHH-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence            4667778887777654210      111   1111           12456666778889999999999887744     


Q ss_pred             ------cccHHHHHHHHHcCCChHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCC-
Q 036263          127 ------CDFWTALLNGFVKRDYFEEALEYFRVMQISG---VEPD--YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFK-  194 (305)
Q Consensus       127 ------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-  194 (305)
                            ..+|+.+...|...|++++|...|++..+.-   -.|.  ..++..+-..|.. |++++|...+++..+.... 
T Consensus        70 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~  148 (307)
T 2ifu_A           70 RSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE  148 (307)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC
Confidence                  3468889999999999999999998765421   1222  4577888888888 9999999999987653211 


Q ss_pred             --C--ChhHHHHHHHHHHhcCChHHHHHHHHhcccC-----c----hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC--
Q 036263          195 --D--NVRVCNTLMDVYSRFGCIEFARQVFQRMHKR-----T----LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF--  259 (305)
Q Consensus       195 --~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--  259 (305)
                        +  ...++..+...|.+.|++++|...|++..+.     +    ...+..+...+...|++++|...|++.. ...  
T Consensus       149 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~  227 (307)
T 2ifu_A          149 ERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF  227 (307)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred             CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence              1  1467888999999999999999999988741     1    2366677778888899999999999987 421  


Q ss_pred             CCC--HHHHHHHHHHHhccCcHHHHHHH
Q 036263          260 KTD--EVSFTGALTACSHAGLIEDGLQY  285 (305)
Q Consensus       260 ~p~--~~~~~~li~~~~~~g~~~~a~~~  285 (305)
                      ...  ......++.++ ..|+.+.+.++
T Consensus       228 ~~~~e~~~l~~l~~~~-~~~d~~~~~~~  254 (307)
T 2ifu_A          228 SGSEDCAALEDLLQAY-DEQDEEQLLRV  254 (307)
T ss_dssp             TTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence            111  12355556655 56777666654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.77  E-value=1.2e-07  Score=70.93  Aligned_cols=158  Identities=8%  Similarity=-0.016  Sum_probs=121.9

Q ss_pred             cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHH-
Q 036263          129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV-  206 (305)
Q Consensus       129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-  206 (305)
                      .+..+...+...|++++|...|++..+.  .| +...+..+...+...|++++|...++...+..  |+...+...... 
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~   83 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLE   83 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHH
Confidence            3456677888999999999999987653  44 57788889999999999999999999987764  254433332212 


Q ss_pred             HHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHH
Q 036263          207 YSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT-DEVSFTGALTACSHAGLIEDG  282 (305)
Q Consensus       207 ~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a  282 (305)
                      +...+...+|...+++..+  | +...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|
T Consensus        84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A  163 (176)
T 2r5s_A           84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI  163 (176)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred             HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence            2222333457778887763  4 57889999999999999999999999998865332 356788899999999999999


Q ss_pred             HHHHHHHH
Q 036263          283 LQYFDIMK  290 (305)
Q Consensus       283 ~~~~~~m~  290 (305)
                      ...|+...
T Consensus       164 ~~~y~~al  171 (176)
T 2r5s_A          164 ASKYRRQL  171 (176)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998765

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.77  E-value=1.2e-06  Score=67.55  Aligned_cols=159  Identities=10%  Similarity=-0.026  Sum_probs=117.9

Q ss_pred             cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcC----ChhHHHHHHHHHhhcCCCCChhHHHH
Q 036263          127 CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVR----TLGIGLWMHRYVPKQDFKDNVRVCNT  202 (305)
Q Consensus       127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~  202 (305)
                      ...+..+...+...+++++|+..|++..+.|   +...+..+-..|.. +    +.++|...|+...+.|   +...+..
T Consensus        18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~   90 (212)
T 3rjv_A           18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIV   90 (212)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence            3446667777777888888888888887755   45566666666766 6    7888999988887765   4666777


Q ss_pred             HHHHHHh----cCChHHHHHHHHhcccCc-----hhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036263          203 LMDVYSR----FGCIEFARQVFQRMHKRT-----LVSWNSIIVGFAV----NGFVGEALEYFNLMQKGVFKTDEVSFTGA  269 (305)
Q Consensus       203 li~~~~~----~g~~~~a~~~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l  269 (305)
                      +...|..    .+++++|.+.|++..+.+     ...+..|-..|..    .+++++|..+|++..+.  ..+...+..|
T Consensus        91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~L  168 (212)
T 3rjv_A           91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWA  168 (212)
T ss_dssp             HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHH
T ss_pred             HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHH
Confidence            7777776    788999999998887532     5788888888888    78899999999998775  2334455566


Q ss_pred             HHHHhcc-C-----cHHHHHHHHHHHHHHhCC
Q 036263          270 LTACSHA-G-----LIEDGLQYFDIMKKIYRV  295 (305)
Q Consensus       270 i~~~~~~-g-----~~~~a~~~~~~m~~~~~~  295 (305)
                      -..|... |     ++++|..+|+... ..|.
T Consensus       169 g~~y~~g~gg~~~~d~~~A~~~~~~A~-~~g~  199 (212)
T 3rjv_A          169 GMMFQQGEKGFIEPNKQKALHWLNVSC-LEGF  199 (212)
T ss_dssp             HHHHHHCBTTTBCCCHHHHHHHHHHHH-HHTC
T ss_pred             HHHHHcCCCCCCCCCHHHHHHHHHHHH-HcCC
Confidence            6666543 2     8899999998877 5553

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.76  E-value=9.4e-08  Score=69.59  Aligned_cols=135  Identities=7%  Similarity=-0.057  Sum_probs=73.7

Q ss_pred             HcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHH
Q 036263          138 VKRDYFEEALEYFRVMQISGVEPD-YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFA  216 (305)
Q Consensus       138 ~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  216 (305)
                      ...|++++|+..+.....  ..|+ ...+..+-..|.+.|++++|.+.|++..+.. +-+...|..+..+|.+.|++++|
T Consensus         8 ~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A   84 (150)
T 4ga2_A            8 RSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA   84 (150)
T ss_dssp             CCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence            334555555555554432  1232 2334445555666666666666666666554 44566666666666666666666


Q ss_pred             HHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHH-HHHHHHCCCCC-CHHHHHHHHHHHhccC
Q 036263          217 RQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEY-FNLMQKGVFKT-DEVSFTGALTACSHAG  277 (305)
Q Consensus       217 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~g~~p-~~~~~~~li~~~~~~g  277 (305)
                      ...|++..+  | +...|..+...|...|++++|.+. +++..+.  .| +...|......+...|
T Consensus        85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           85 VECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence            666666552  2 445666666666666666554443 3555552  23 3444544444444444

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.75  E-value=5.8e-07  Score=73.05  Aligned_cols=161  Identities=8%  Similarity=-0.018  Sum_probs=118.4

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCC---CCC--hhH
Q 036263          130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPD-----YLTIISVLNVCANVRTLGIGLWMHRYVPKQDF---KDN--VRV  199 (305)
Q Consensus       130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~  199 (305)
                      +...+..+...|++++|.+.+.+..+.....+     ...+..+...+...|++++|...++...+...   .+.  ..+
T Consensus        78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  157 (293)
T 2qfc_A           78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI  157 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence            44567778889999999999987765422211     12234455567788899999999988765321   111  457


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhccc-----Cc-----hhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHH
Q 036263          200 CNTLMDVYSRFGCIEFARQVFQRMHK-----RT-----LVSWNSIIVGFAVNGFVGEALEYFNLMQKG----VFKT-DEV  264 (305)
Q Consensus       200 ~~~li~~~~~~g~~~~a~~~~~~~~~-----~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~  264 (305)
                      |+.+...|...|++++|...|++..+     ++     ..++..+...|...|++++|...+++..+.    +... -..
T Consensus       158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~  237 (293)
T 2qfc_A          158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ  237 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            88999999999999999999988761     22     258888999999999999999999987653    1111 156


Q ss_pred             HHHHHHHHHhccCcHHHH-HHHHHHHH
Q 036263          265 SFTGALTACSHAGLIEDG-LQYFDIMK  290 (305)
Q Consensus       265 ~~~~li~~~~~~g~~~~a-~~~~~~m~  290 (305)
                      +|..+..++.+.|++++| ...++...
T Consensus       238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          238 LYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            788888899999999999 77777654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.75  E-value=1.9e-07  Score=83.39  Aligned_cols=126  Identities=6%  Similarity=-0.063  Sum_probs=81.1

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036263           97 NVMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNV  171 (305)
Q Consensus        97 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~  171 (305)
                      +...+..+...+.+.|++++|...|++..+     ...|..+...+...|++++|.+.+++..+.. +-+...+..+..+
T Consensus        22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~  100 (568)
T 2vsy_A           22 DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHA  100 (568)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            455666666666777777777777766643     3446666666777777777777776665542 2245566666666


Q ss_pred             hcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc---CChHHHHHHHHhcc
Q 036263          172 CANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF---GCIEFARQVFQRMH  224 (305)
Q Consensus       172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~  224 (305)
                      +...|++++|.+.+++..+.. +.+...+..+..++...   |+.++|.+.+++..
T Consensus       101 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al  155 (568)
T 2vsy_A          101 LEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV  155 (568)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            777777777777777666654 34456666666666666   67777777766665

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.74  E-value=2.5e-07  Score=75.13  Aligned_cols=159  Identities=9%  Similarity=-0.063  Sum_probs=118.0

Q ss_pred             ccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHH-HHHHH
Q 036263          128 DFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC-NTLMD  205 (305)
Q Consensus       128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~  205 (305)
                      ..+..+...+...|++++|...|++..+.  .| +...+..+...+...|++++|...++.+.+..  |+.... .....
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~  193 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQI  193 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHH
Confidence            34566777788889999999998887764  45 56777888888888999999999888887664  343322 23333


Q ss_pred             HHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHH
Q 036263          206 VYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT-DEVSFTGALTACSHAGLIED  281 (305)
Q Consensus       206 ~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~  281 (305)
                      .+.+.++.++|...+++...  | +...+..+...+...|++++|...|+++.+..... +...+..+...+...|+.++
T Consensus       194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~  273 (287)
T 3qou_A          194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA  273 (287)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred             HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence            46677777888888887763  3 56788888888899999999999998888753211 25678888888888888888


Q ss_pred             HHHHHHHHH
Q 036263          282 GLQYFDIMK  290 (305)
Q Consensus       282 a~~~~~~m~  290 (305)
                      |...++...
T Consensus       274 a~~~~r~al  282 (287)
T 3qou_A          274 LASXYRRQL  282 (287)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888877654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.73  E-value=1.2e-07  Score=77.75  Aligned_cols=169  Identities=7%  Similarity=-0.108  Sum_probs=126.4

Q ss_pred             CChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhcCcCChhHHHHHHH
Q 036263          112 GRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQIS----GVEP-DYLTIISVLNVCANVRTLGIGLWMHR  186 (305)
Q Consensus       112 g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~  186 (305)
                      ++++.|...|         +.....|...|++++|...|.+..+.    |-.+ -..+|+.+...|...|++++|...++
T Consensus        30 ~~~~~A~~~~---------~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~  100 (307)
T 2ifu_A           30 PDYDSAASEY---------AKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIE  100 (307)
T ss_dssp             CCHHHHHHHH---------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHH
T ss_pred             CCHHHHHHHH---------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            4555555554         44567888899999999999877542    2111 14578888899999999999999999


Q ss_pred             HHhhc----CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhcccC---------chhhHHHHHHHHHhcCChHHHHHHHH
Q 036263          187 YVPKQ----DFKD-NVRVCNTLMDVYSRFGCIEFARQVFQRMHKR---------TLVSWNSIIVGFAVNGFVGEALEYFN  252 (305)
Q Consensus       187 ~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~a~~~~~  252 (305)
                      +..+.    |-.. ...++..+...|.. |++++|...|++..+-         ...+++.+...|...|++++|...|+
T Consensus       101 ~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~  179 (307)
T 2ifu_A          101 KASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQ  179 (307)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            87653    2111 24678888889988 9999999999987631         14678889999999999999999999


Q ss_pred             HHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          253 LMQKG----VFKTD-EVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       253 ~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      +..+.    +..++ ...+..+..++...|++++|...|++..
T Consensus       180 ~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          180 KEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            98763    22222 2356667777888899999999998765

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.72  E-value=9.3e-07  Score=71.85  Aligned_cols=157  Identities=8%  Similarity=-0.090  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhcCc-----------cccHHHHHHHHHcCCChHHHHHHHHHHHHcC---CCCC--HH
Q 036263          100 VSTALLDMYAKFGRMDLATVVFDVMRG-----------CDFWTALLNGFVKRDYFEEALEYFRVMQISG---VEPD--YL  163 (305)
Q Consensus       100 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~--~~  163 (305)
                      .+...+..+...|++++|.+.++...+           ...+..+...+...|++++|...+++..+..   ..+.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            344567778899999999999876532           1224456667788899999999999876532   1222  45


Q ss_pred             HHHHHHHHhcCcCChhHHHHHHHHHhh---cC-CCC--ChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-------ch
Q 036263          164 TIISVLNVCANVRTLGIGLWMHRYVPK---QD-FKD--NVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-------TL  228 (305)
Q Consensus       164 t~~~ll~~~~~~~~~~~a~~~~~~~~~---~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-------~~  228 (305)
                      +++.+...|...|++++|...+++..+   .. -.+  ...++..+...|.+.|++++|...+++..+  +       -.
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            888999999999999999999998873   21 111  126889999999999999999999998763  1       15


Q ss_pred             hhHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 036263          229 VSWNSIIVGFAVNGFVGEA-LEYFNLMQK  256 (305)
Q Consensus       229 ~~~~~li~~~~~~g~~~~a-~~~~~~m~~  256 (305)
                      .+|..+...|...|++++| ...+++...
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            6788899999999999999 777777543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.72  E-value=6.7e-07  Score=72.54  Aligned_cols=151  Identities=7%  Similarity=-0.085  Sum_probs=115.9

Q ss_pred             HHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHHhcCc
Q 036263          102 TALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIIS-VLNVCANV  175 (305)
Q Consensus       102 ~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~  175 (305)
                      ..+...+.+.|++++|...|++...     ...+..+...+.+.|++++|...+++....  .|+...... ....+...
T Consensus       121 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~  198 (287)
T 3qou_A          121 AQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQ  198 (287)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhh
Confidence            3444557778888888888887743     456778888888999999999999887654  455433322 22335677


Q ss_pred             CChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C---chhhHHHHHHHHHhcCChHHHHHH
Q 036263          176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R---TLVSWNSIIVGFAVNGFVGEALEY  250 (305)
Q Consensus       176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~a~~~  250 (305)
                      ++.++|...+++..+.. +.+...+..+...|...|++++|...|+++.+  |   +...+..+...|...|+.++|...
T Consensus       199 ~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~  277 (287)
T 3qou_A          199 AADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASX  277 (287)
T ss_dssp             HTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHH
Confidence            78888888888888875 66788889999999999999999999998874  3   256788899999999999999888


Q ss_pred             HHHHH
Q 036263          251 FNLMQ  255 (305)
Q Consensus       251 ~~~m~  255 (305)
                      +++..
T Consensus       278 ~r~al  282 (287)
T 3qou_A          278 YRRQL  282 (287)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87754

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.69  E-value=2.1e-06  Score=69.74  Aligned_cols=154  Identities=10%  Similarity=-0.049  Sum_probs=119.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhcCc-----------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CC----HHH
Q 036263          101 STALLDMYAKFGRMDLATVVFDVMRG-----------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVE-PD----YLT  164 (305)
Q Consensus       101 ~~~ll~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~t  164 (305)
                      +...+..+.+.|++++|..+++...+           ...+..+...+...|++++|...|++..+.... ++    ..+
T Consensus        78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~  157 (293)
T 3u3w_A           78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI  157 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence            33446788899999999999998754           112345667777888999999999998874222 22    346


Q ss_pred             HHHHHHHhcCcCChhHHHHHHHHHhh----c-CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhcccC---------chh
Q 036263          165 IISVLNVCANVRTLGIGLWMHRYVPK----Q-DFKD-NVRVCNTLMDVYSRFGCIEFARQVFQRMHKR---------TLV  229 (305)
Q Consensus       165 ~~~ll~~~~~~~~~~~a~~~~~~~~~----~-~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---------~~~  229 (305)
                      ++.+...|...|++++|...+++..+    . +..+ ...++..+...|.+.|++++|...+++..+-         -..
T Consensus       158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~  237 (293)
T 3u3w_A          158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ  237 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence            89999999999999999999999874    1 2122 2457889999999999999999999987631         146


Q ss_pred             hHHHHHHHHHhcCC-hHHHHHHHHHH
Q 036263          230 SWNSIIVGFAVNGF-VGEALEYFNLM  254 (305)
Q Consensus       230 ~~~~li~~~~~~g~-~~~a~~~~~~m  254 (305)
                      +|..+..+|...|+ +++|.+.+++.
T Consensus       238 ~~~~lg~~~~~~g~~~~~A~~~~~~A  263 (293)
T 3u3w_A          238 LYYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence            88889999999995 69999988774

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.69  E-value=9.6e-07  Score=67.84  Aligned_cols=123  Identities=10%  Similarity=0.010  Sum_probs=104.6

Q ss_pred             HHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHh
Q 036263          164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAV  240 (305)
Q Consensus       164 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~  240 (305)
                      .+..+...+...|++++|...+++..    .|+...+..+..+|.+.|++++|...|++..+   .+...|..+...|..
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            34556667788999999999998874    56888999999999999999999999999874   366789999999999


Q ss_pred             cCChHHHHHHHHHHHHCCC--------------CC-CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          241 NGFVGEALEYFNLMQKGVF--------------KT-DEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       241 ~g~~~~a~~~~~~m~~~g~--------------~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      .|++++|.+.|++..+...              .| +...+..+..++.+.|++++|.+.|+...
T Consensus        84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  148 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT  148 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            9999999999999988531              11 22677888899999999999999999887

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.68  E-value=1.4e-06  Score=63.38  Aligned_cols=104  Identities=16%  Similarity=0.018  Sum_probs=82.7

Q ss_pred             CCCC-HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHH
Q 036263          158 VEPD-YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNS  233 (305)
Q Consensus       158 ~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~  233 (305)
                      +.|+ ...+..+-..+.+.|++++|...|+...+.. +.+...|..+..+|...|++++|...|++..+  | +...|..
T Consensus        31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~  109 (151)
T 3gyz_A           31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH  109 (151)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence            4553 4567777778888889999999998888876 56788888888888889999999998888863  3 5678888


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 036263          234 IIVGFAVNGFVGEALEYFNLMQKGVFKTDEV  264 (305)
Q Consensus       234 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~  264 (305)
                      +..+|...|++++|...|++..+.  .|+..
T Consensus       110 lg~~~~~lg~~~eA~~~~~~al~l--~~~~~  138 (151)
T 3gyz_A          110 TGQCQLRLKAPLKAKECFELVIQH--SNDEK  138 (151)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence            888888999999999998888874  46553

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.68  E-value=8.8e-08  Score=69.74  Aligned_cols=136  Identities=6%  Similarity=-0.093  Sum_probs=98.7

Q ss_pred             HHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCCh
Q 036263          105 LDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTL  178 (305)
Q Consensus       105 l~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~  178 (305)
                      ...+...|++++|+..++....     ...+..+...|.+.|++++|.+.|++..+.  .| +..+|..+..++...|++
T Consensus         4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCch
Confidence            3445566788888888877754     445667888888888899988888887764  45 577888888888888888


Q ss_pred             hHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHH-HHhccc--C-chhhHHHHHHHHHhcCC
Q 036263          179 GIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQV-FQRMHK--R-TLVSWNSIIVGFAVNGF  243 (305)
Q Consensus       179 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~~~~--~-~~~~~~~li~~~~~~g~  243 (305)
                      ++|...|+...+.. +-+...|..+...|.+.|+.++|.+. +++..+  | +..+|......+...|+
T Consensus        82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            88888888888875 55677888888888888888766554 465542  3 55666666665555553

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.68  E-value=1.4e-06  Score=63.90  Aligned_cols=126  Identities=10%  Similarity=0.009  Sum_probs=88.5

Q ss_pred             HHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHH
Q 036263          163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFA  239 (305)
Q Consensus       163 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~  239 (305)
                      ..+..+...+...|++++|...++...+.. +.+...+..+..++...|++++|...+++..+   .+...|..+...+.
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            345556666677777777777777776654 44567777777788888888888888877663   35567777788888


Q ss_pred             hcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCcHHHHHHHHHHHH
Q 036263          240 VNGFVGEALEYFNLMQKGVFKTDEVSFT--GALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       240 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      ..|++++|...+++..+.. +.+...+.  .....+.+.|++++|++.+....
T Consensus        93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            8888888888888877743 12334443  33334667788888888888765

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.67  E-value=1.7e-05  Score=64.58  Aligned_cols=215  Identities=8%  Similarity=-0.090  Sum_probs=160.9

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcC--ChHHHHHHHHhcCc-----c
Q 036263           55 HCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFG--RMDLATVVFDVMRG-----C  127 (305)
Q Consensus        55 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~-----~  127 (305)
                      ..+....++|+.+++.+..  +.|+..|                 +|+.--.++...|  ++++++..++.+..     .
T Consensus        43 ~~~~e~s~~aL~~t~~~L~--~nP~~~t-----------------aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y  103 (306)
T 3dra_A           43 MKAEEYSERALHITELGIN--ELASHYT-----------------IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY  103 (306)
T ss_dssp             HHTTCCSHHHHHHHHHHHH--HCTTCHH-----------------HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC
T ss_pred             HHcCCCCHHHHHHHHHHHH--HCcHHHH-----------------HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH
Confidence            3344444689999999987  4665443                 3566666677778  99999999988844     3


Q ss_pred             ccHHHHHHHH----HcC---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChh--HHHHHHHHHhhcCCCCChh
Q 036263          128 DFWTALLNGF----VKR---DYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLG--IGLWMHRYVPKQDFKDNVR  198 (305)
Q Consensus       128 ~~~~~li~~~----~~~---g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~  198 (305)
                      .+|+.--..+    ...   +++++++++++.+.+.. +-+..+|+.--..+.+.|.++  ++.+.++.+.+.+ +-|-.
T Consensus       104 ~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~s  181 (306)
T 3dra_A          104 QIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNS  181 (306)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHH
T ss_pred             HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHH
Confidence            3454433333    444   78999999999998753 236777777666667777777  9999999999987 56777


Q ss_pred             HHHHHHHHHHhcCC------hHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHH-HHHHHHHHHHCC--CCCCHHHH
Q 036263          199 VCNTLMDVYSRFGC------IEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGE-ALEYFNLMQKGV--FKTDEVSF  266 (305)
Q Consensus       199 ~~~~li~~~~~~g~------~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~g--~~p~~~~~  266 (305)
                      .|+.-...+.+.++      ++++.+.++++..   .|...|+-+-..+.+.|+... +..+..+..+.+  -..+...+
T Consensus       182 AW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al  261 (306)
T 3dra_A          182 AWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFAL  261 (306)
T ss_dssp             HHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHH
T ss_pred             HHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHH
Confidence            88777777777776      8889988888763   477889888888888888544 556777765533  13477889


Q ss_pred             HHHHHHHhccCcHHHHHHHHHHHH
Q 036263          267 TGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       267 ~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      ..+...+.+.|+.++|.++++.+.
T Consensus       262 ~~la~~~~~~~~~~~A~~~~~~l~  285 (306)
T 3dra_A          262 ETLAKIYTQQKKYNESRTVYDLLK  285 (306)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCHHHHHHHHHHHH
Confidence            999999999999999999999987

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.66  E-value=2e-06  Score=74.46  Aligned_cols=152  Identities=11%  Similarity=-0.002  Sum_probs=78.2

Q ss_pred             cHHHHHHHHHcCC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCc----CChhHHHHHHHHHhhcCCCCChhHHH
Q 036263          129 FWTALLNGFVKRD---YFEEALEYFRVMQISGVEPDYLTIISVLNVCANV----RTLGIGLWMHRYVPKQDFKDNVRVCN  201 (305)
Q Consensus       129 ~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~  201 (305)
                      .+..|...|...|   +.++|++.|++..+.| .++...+..+-..|...    ++.++|...|+... .   -+...+.
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~  252 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWV  252 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHH
Confidence            3444555555555   5556666665555544 23333333344444333    45566666666554 2   2334444


Q ss_pred             HHHHH-H--HhcCChHHHHHHHHhcccC-chhhHHHHHHHHHhcC-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036263          202 TLMDV-Y--SRFGCIEFARQVFQRMHKR-TLVSWNSIIVGFAVNG-----FVGEALEYFNLMQKGVFKTDEVSFTGALTA  272 (305)
Q Consensus       202 ~li~~-~--~~~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  272 (305)
                      .+... |  ...+++++|.+.|++..+. +...+..+...|. .|     ++++|..+|++.. .|   +...+..+-..
T Consensus       253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~  327 (452)
T 3e4b_A          253 SLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQI  327 (452)
T ss_dssp             HHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHH
Confidence            44444 2  3455666666666665532 4445555555554 33     6666666666655 22   34444444444


Q ss_pred             Hhc----cCcHHHHHHHHHHHH
Q 036263          273 CSH----AGLIEDGLQYFDIMK  290 (305)
Q Consensus       273 ~~~----~g~~~~a~~~~~~m~  290 (305)
                      |..    ..++++|..+|+...
T Consensus       328 y~~G~g~~~d~~~A~~~~~~Aa  349 (452)
T 3e4b_A          328 YRRGYLGKVYPQKALDHLLTAA  349 (452)
T ss_dssp             HHTTTTSSCCHHHHHHHHHHHH
T ss_pred             HHCCCCCCcCHHHHHHHHHHHH
Confidence            444    236667777766665

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.63  E-value=1e-06  Score=62.00  Aligned_cols=98  Identities=7%  Similarity=-0.026  Sum_probs=69.4

Q ss_pred             CCCC-HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHH
Q 036263          158 VEPD-YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNS  233 (305)
Q Consensus       158 ~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~  233 (305)
                      +.|+ ...+...-..+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...|++..+   .+...|..
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~   86 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR   86 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            3443 3456666667777777777777777777665 55677777777777777777777777777653   35567777


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHH
Q 036263          234 IIVGFAVNGFVGEALEYFNLMQK  256 (305)
Q Consensus       234 li~~~~~~g~~~~a~~~~~~m~~  256 (305)
                      +..+|...|++++|.+.|++..+
T Consensus        87 lg~~~~~~~~~~~A~~~~~~al~  109 (126)
T 4gco_A           87 KAACLVAMREWSKAQRAYEDALQ  109 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH
Confidence            77777777777777777777776

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.61  E-value=3.4e-06  Score=65.04  Aligned_cols=158  Identities=15%  Similarity=0.022  Sum_probs=126.3

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhcCc---cccHHHHHHHHHcCC----ChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036263           98 VMVSTALLDMYAKFGRMDLATVVFDVMRG---CDFWTALLNGFVKRD----YFEEALEYFRVMQISGVEPDYLTIISVLN  170 (305)
Q Consensus        98 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~g~~p~~~t~~~ll~  170 (305)
                      ...+..|...|...+++++|...|++..+   ...+..|...|.. +    ++++|..+|++..+.|   +...+..+-.
T Consensus        18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~   93 (212)
T 3rjv_A           18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLAR   93 (212)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence            33445566677888999999999998855   4557777777777 6    8999999999987755   4566777777


Q ss_pred             HhcC----cCChhHHHHHHHHHhhcCCC-CChhHHHHHHHHHHh----cCChHHHHHHHHhccc--CchhhHHHHHHHHH
Q 036263          171 VCAN----VRTLGIGLWMHRYVPKQDFK-DNVRVCNTLMDVYSR----FGCIEFARQVFQRMHK--RTLVSWNSIIVGFA  239 (305)
Q Consensus       171 ~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~  239 (305)
                      .|..    .+++++|...|++..+.|.. .+...+..|...|..    .++.++|...|++..+  .+...+..|...|.
T Consensus        94 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~  173 (212)
T 3rjv_A           94 VLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQ  173 (212)
T ss_dssp             HHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHH
T ss_pred             HHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            7776    88999999999999988621 126788888888988    8899999999999864  46777888888887


Q ss_pred             hc-C-----ChHHHHHHHHHHHHCCC
Q 036263          240 VN-G-----FVGEALEYFNLMQKGVF  259 (305)
Q Consensus       240 ~~-g-----~~~~a~~~~~~m~~~g~  259 (305)
                      .. |     ++++|..+|++..+.|.
T Consensus       174 ~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          174 QGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            54 3     89999999999988874

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.61  E-value=2.1e-06  Score=62.89  Aligned_cols=126  Identities=10%  Similarity=-0.014  Sum_probs=97.1

Q ss_pred             cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 036263          129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS  208 (305)
Q Consensus       129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  208 (305)
                      .|..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...++...+.. +.+...+..+..++.
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence            46667778888888899888888876642 2357778888888889999999999999888875 556778888889999


Q ss_pred             hcCChHHHHHHHHhccc--C-chhhHHH--HHHHHHhcCChHHHHHHHHHHHH
Q 036263          209 RFGCIEFARQVFQRMHK--R-TLVSWNS--IIVGFAVNGFVGEALEYFNLMQK  256 (305)
Q Consensus       209 ~~g~~~~a~~~~~~~~~--~-~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~  256 (305)
                      ..|++++|...|++..+  | +...+..  ....+...|++++|.+.+.....
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            99999999999988874  2 3344433  34447778899999988877543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.60  E-value=6.6e-07  Score=68.09  Aligned_cols=146  Identities=14%  Similarity=-0.005  Sum_probs=84.3

Q ss_pred             hcCChHHHHH---HHHhcCc--cccHHHHHHHHHcCCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhcCcCChh
Q 036263          110 KFGRMDLATV---VFDVMRG--CDFWTALLNGFVKRDYFEEALEYFRVMQIS----GVEP-DYLTIISVLNVCANVRTLG  179 (305)
Q Consensus       110 ~~g~~~~a~~---~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~  179 (305)
                      ..|++++|.+   .+..-+.  ...+..+...+...|++++|...+++..+.    |..| ...++..+...+...|+++
T Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~   83 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD   83 (203)
T ss_dssp             ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            4577777777   4443332  345666677777777777777777665441    1122 2445566666667777777


Q ss_pred             HHHHHHHHHhhc----CCC--CChhHHHHHHHHHHhcCChHHHHHHHHhccc-----Cc----hhhHHHHHHHHHhcCCh
Q 036263          180 IGLWMHRYVPKQ----DFK--DNVRVCNTLMDVYSRFGCIEFARQVFQRMHK-----RT----LVSWNSIIVGFAVNGFV  244 (305)
Q Consensus       180 ~a~~~~~~~~~~----~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~  244 (305)
                      +|...+++..+.    +-.  .....+..+...+...|++++|...+++..+     .+    ..++..+...+...|++
T Consensus        84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  163 (203)
T 3gw4_A           84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL  163 (203)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence            777777665442    101  1234456666667777777777777666542     11    12345566666677777


Q ss_pred             HHHHHHHHHHH
Q 036263          245 GEALEYFNLMQ  255 (305)
Q Consensus       245 ~~a~~~~~~m~  255 (305)
                      ++|.+.+++..
T Consensus       164 ~~A~~~~~~al  174 (203)
T 3gw4_A          164 LEAQQHWLRAR  174 (203)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77776666544

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.59  E-value=1.5e-07  Score=76.19  Aligned_cols=186  Identities=9%  Similarity=-0.043  Sum_probs=115.8

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 036263           98 VMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNV  171 (305)
Q Consensus        98 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~  171 (305)
                      ...+..+...+.+.|++++|...|+....     ...|..+...+.+.|++++|...+++..+.  .| +...+..+..+
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~   81 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC   81 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence            34566677778888999999999887743     455788888888999999999999887664  44 56778888888


Q ss_pred             hcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHH
Q 036263          172 CANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYF  251 (305)
Q Consensus       172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  251 (305)
                      +...|++++|...++...+.+ +.+...+...+....+..+.......-......+...... +..+ ..|++++|.+.+
T Consensus        82 ~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-l~~l-~~~~~~~A~~~~  158 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSY-LTRL-IAAERERELEEC  158 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHH-HHHH-HHHHHHHHHTTT
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHH-HHHHHHHHHHHH
Confidence            889999999999888876643 1111111111111111111111111111111223333222 2333 368899999988


Q ss_pred             HHHHHCCCCCCHHHHHHHHH-HHhcc-CcHHHHHHHHHHHH
Q 036263          252 NLMQKGVFKTDEVSFTGALT-ACSHA-GLIEDGLQYFDIMK  290 (305)
Q Consensus       252 ~~m~~~g~~p~~~~~~~li~-~~~~~-g~~~~a~~~~~~m~  290 (305)
                      ++..+.  .|+......-+. .+.+. +.++++.++|+...
T Consensus       159 ~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~  197 (281)
T 2c2l_A          159 QRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVD  197 (281)
T ss_dssp             SGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             Hhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            887764  566544433333 33343 67889999998776

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.58  E-value=2.4e-06  Score=59.00  Aligned_cols=95  Identities=15%  Similarity=0.146  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHH
Q 036263          162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGF  238 (305)
Q Consensus       162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~  238 (305)
                      ...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...++++.+   .+..++..+...+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            3455566666666777777777777666553 34556666677777777777777777766653   3455666677777


Q ss_pred             HhcCChHHHHHHHHHHHHC
Q 036263          239 AVNGFVGEALEYFNLMQKG  257 (305)
Q Consensus       239 ~~~g~~~~a~~~~~~m~~~  257 (305)
                      ...|++++|...++++.+.
T Consensus        88 ~~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHh
Confidence            7777777777777776664

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.58  E-value=1e-06  Score=67.03  Aligned_cols=154  Identities=10%  Similarity=-0.062  Sum_probs=113.8

Q ss_pred             HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhc----CCC-CChhHHHHHHHHHHhcC
Q 036263          137 FVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQ----DFK-DNVRVCNTLMDVYSRFG  211 (305)
Q Consensus       137 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g  211 (305)
                      +...|++++|.++++.+.. .......++..+...+...|++++|...+++..+.    +.. ....++..+...|...|
T Consensus         2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g   80 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG   80 (203)
T ss_dssp             -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence            3467999999996655533 12235678888899999999999999999987652    222 23567888999999999


Q ss_pred             ChHHHHHHHHhccc-----C-c----hhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHhcc
Q 036263          212 CIEFARQVFQRMHK-----R-T----LVSWNSIIVGFAVNGFVGEALEYFNLMQKG----VFK-TDEVSFTGALTACSHA  276 (305)
Q Consensus       212 ~~~~a~~~~~~~~~-----~-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~  276 (305)
                      ++++|.+.+++..+     + +    ...+..+...+...|++++|...+++..+.    +-. .-..++..+...+...
T Consensus        81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  160 (203)
T 3gw4_A           81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE  160 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence            99999999988763     2 2    345778888999999999999999987642    211 1123467778889999


Q ss_pred             CcHHHHHHHHHHHHH
Q 036263          277 GLIEDGLQYFDIMKK  291 (305)
Q Consensus       277 g~~~~a~~~~~~m~~  291 (305)
                      |++++|...+++...
T Consensus       161 g~~~~A~~~~~~al~  175 (203)
T 3gw4_A          161 KNLLEAQQHWLRARD  175 (203)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHH
Confidence            999999999988763

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.56  E-value=6.7e-07  Score=66.73  Aligned_cols=118  Identities=9%  Similarity=0.021  Sum_probs=90.2

Q ss_pred             HcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHH-HHhcCCh--H
Q 036263          138 VKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV-YSRFGCI--E  214 (305)
Q Consensus       138 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~  214 (305)
                      ...|++++|...+++..+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+..+ |...|++  +
T Consensus        21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence            45677888888888776642 2356788888888888999999999998888765 4567777788888 7788888  9


Q ss_pred             HHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263          215 FARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG  257 (305)
Q Consensus       215 ~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  257 (305)
                      +|...+++..+  | +...+..+...|...|++++|...|++..+.
T Consensus        99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            99999888763  3 5677888888899999999999999988874

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.54  E-value=2e-06  Score=68.70  Aligned_cols=177  Identities=10%  Similarity=-0.051  Sum_probs=129.5

Q ss_pred             hcCChHHHHHHHHhcCc-----cccHHHH-------HHHHHcCCChHHHHHHHHHHHHcCCCCC----------------
Q 036263          110 KFGRMDLATVVFDVMRG-----CDFWTAL-------LNGFVKRDYFEEALEYFRVMQISGVEPD----------------  161 (305)
Q Consensus       110 ~~g~~~~a~~~~~~~~~-----~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~g~~p~----------------  161 (305)
                      ..++...|.+.|.++..     ...|..+       ...+.+.++..+++..+..-.+  +.|+                
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~   95 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT   95 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred             cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence            57899999999998855     4456666       3555555555555554443322  2222                


Q ss_pred             ------HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCc-----hhh
Q 036263          162 ------YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRT-----LVS  230 (305)
Q Consensus       162 ------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~  230 (305)
                            ..........+...|++++|.++|+.+...+  |+......+...+.+.+++++|+..|+...+..     ...
T Consensus        96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a  173 (282)
T 4f3v_A           96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAA  173 (282)
T ss_dssp             EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHH
T ss_pred             cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHH
Confidence                  1223445667788999999999999988765  443366667778999999999999999776532     346


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          231 WNSIIVGFAVNGFVGEALEYFNLMQKGVFKTD--EVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       231 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      +..+-.++...|++++|+..|++.......|.  .........++.+.|+.++|..+|+.+.
T Consensus       174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~  235 (282)
T 4f3v_A          174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ  235 (282)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            77888999999999999999999875433254  3355666778889999999999999998

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.53  E-value=4.6e-06  Score=57.56  Aligned_cols=95  Identities=17%  Similarity=0.201  Sum_probs=68.5

Q ss_pred             cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 036263          129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS  208 (305)
Q Consensus       129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  208 (305)
                      .|..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+...|.
T Consensus        11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~   88 (125)
T 1na0_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence            35566667777777777777777776542 2356667777777778888888888888777664 455677777788888


Q ss_pred             hcCChHHHHHHHHhccc
Q 036263          209 RFGCIEFARQVFQRMHK  225 (305)
Q Consensus       209 ~~g~~~~a~~~~~~~~~  225 (305)
                      ..|++++|...++++.+
T Consensus        89 ~~~~~~~A~~~~~~~~~  105 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALE  105 (125)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHH
Confidence            88888888888877653

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.53  E-value=1.6e-06  Score=64.68  Aligned_cols=117  Identities=4%  Similarity=-0.044  Sum_probs=96.8

Q ss_pred             hcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHH-HHhcCCh--H
Q 036263          172 CANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVG-FAVNGFV--G  245 (305)
Q Consensus       172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~-~~~~g~~--~  245 (305)
                      +...|++++|...++...+.. +.+...+..+...|...|++++|...|++..+   .+...+..+... +...|++  +
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence            456788999999999988875 56788999999999999999999999999874   366778888888 7899998  9


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          246 EALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       246 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      +|...+++..+.. +-+...+..+...+...|++++|...++...
T Consensus        99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  142 (177)
T 2e2e_A           99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVM  142 (177)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            9999999998853 2356788888899999999999999999988

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.51  E-value=3e-06  Score=59.11  Aligned_cols=115  Identities=12%  Similarity=-0.019  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHH
Q 036263          162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGF  238 (305)
Q Consensus       162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~  238 (305)
                      ...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..+   .+...+..+...+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            4455556666666777777777777666653 34566666777777777777777777776653   2455666677777


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 036263          239 AVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGL  278 (305)
Q Consensus       239 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  278 (305)
                      ...|++++|...+++..+.. +.+...+..+..++.+.|+
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred             HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence            77777777777777766642 2244555555556555554

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.50  E-value=1.4e-05  Score=72.26  Aligned_cols=206  Identities=8%  Similarity=0.003  Sum_probs=138.5

Q ss_pred             HhHHHHHHHHHhcCChhHHH-HHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 036263           46 VQWTSSISRHCRSGCILEAA-LEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM  124 (305)
Q Consensus        46 ~~~~~li~~~~~~~~~~~a~-~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~  124 (305)
                      ..|-.....+.+.|+.++|. .+|+..... + |.                 +...|-..+....+.|+++.|.++|+.+
T Consensus       344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~-P~-----------------s~~Lwl~~a~~ee~~~~~e~aR~iyek~  404 (679)
T 4e6h_A          344 EIWFNMANYQGEKNTDSTVITKYLKLGQQC-I-PN-----------------SAVLAFSLSEQYELNTKIPEIETTILSC  404 (679)
T ss_dssp             HHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-C-TT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-C-CC-----------------CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            34444444455556666664 666665542 2 22                 2233455666778889999999999887


Q ss_pred             Ccc---------------------------ccHHHHHHHHHcCCChHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHhcCc
Q 036263          125 RGC---------------------------DFWTALLNGFVKRDYFEEALEYFRVMQIS-G-VEPDYLTIISVLNVCANV  175 (305)
Q Consensus       125 ~~~---------------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g-~~p~~~t~~~ll~~~~~~  175 (305)
                      .+.                           .+|-..+....+.|..+.|..+|....+. + ..+......+.+.-. ..
T Consensus       405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~-~~  483 (679)
T 4e6h_A          405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH-IS  483 (679)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT-TT
T ss_pred             HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-hC
Confidence            541                           14667777777788899999999888764 2 122333333333322 23


Q ss_pred             CChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C----chhhHHHHHHHHHhcCChHHHHH
Q 036263          176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R----TLVSWNSIIVGFAVNGFVGEALE  249 (305)
Q Consensus       176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~a~~  249 (305)
                      ++.+.|..+|+...+. ++-+...+...++.....|+.+.|..+|++...  +    ....|...+.--...|+.+.+.+
T Consensus       484 ~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~  562 (679)
T 4e6h_A          484 KDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT  562 (679)
T ss_dssp             SCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred             CCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            4588999999988876 455667777888888888999999999998774  2    33577778888888899999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHh
Q 036263          250 YFNLMQKGVFKTDEVSFTGALTACS  274 (305)
Q Consensus       250 ~~~~m~~~g~~p~~~~~~~li~~~~  274 (305)
                      +.+++.+.  .|+......++.-|.
T Consensus       563 v~~R~~~~--~P~~~~~~~f~~ry~  585 (679)
T 4e6h_A          563 LEKRFFEK--FPEVNKLEEFTNKYK  585 (679)
T ss_dssp             HHHHHHHH--STTCCHHHHHHHHTC
T ss_pred             HHHHHHHh--CCCCcHHHHHHHHhc
Confidence            99998885  355555555555543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.49  E-value=3.6e-06  Score=59.00  Aligned_cols=94  Identities=7%  Similarity=0.065  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHH
Q 036263          162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGF  238 (305)
Q Consensus       162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~  238 (305)
                      ...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...+++..+   .+...+..+...+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   94 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            4455555555666666666666666655543 33455556666666666666666666665542   2345555666666


Q ss_pred             HhcCChHHHHHHHHHHHH
Q 036263          239 AVNGFVGEALEYFNLMQK  256 (305)
Q Consensus       239 ~~~g~~~~a~~~~~~m~~  256 (305)
                      ...|++++|.+.|++..+
T Consensus        95 ~~~~~~~~A~~~~~~~~~  112 (133)
T 2lni_A           95 EAMKDYTKAMDVYQKALD  112 (133)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHH
Confidence            666666666666666555

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.47  E-value=8e-06  Score=57.16  Aligned_cols=112  Identities=6%  Similarity=-0.042  Sum_probs=81.3

Q ss_pred             cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 036263          129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS  208 (305)
Q Consensus       129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  208 (305)
                      .|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+|.
T Consensus        18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~   95 (133)
T 2lni_A           18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALE   95 (133)
T ss_dssp             HHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence            36667777777888888888888776542 2256777788888888888888888888887764 456778888888888


Q ss_pred             hcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcC
Q 036263          209 RFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNG  242 (305)
Q Consensus       209 ~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g  242 (305)
                      +.|++++|.+.|++..+  | +...+..+...+...|
T Consensus        96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            88888888888887763  2 3445555555555444

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.46  E-value=6.8e-06  Score=57.19  Aligned_cols=114  Identities=7%  Similarity=-0.070  Sum_probs=83.1

Q ss_pred             cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 036263          129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS  208 (305)
Q Consensus       129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  208 (305)
                      .+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++...+.. +.+...+..+...|.
T Consensus        14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~   91 (131)
T 2vyi_A           14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS   91 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence            35566677777888888888888776542 2356677777778888888888888888887764 455777888888888


Q ss_pred             hcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCCh
Q 036263          209 RFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFV  244 (305)
Q Consensus       209 ~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~  244 (305)
                      ..|++++|...|++..+  | +...+..+...+...|++
T Consensus        92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            88888888888887763  3 456666666777666654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.46  E-value=5.8e-06  Score=60.05  Aligned_cols=94  Identities=10%  Similarity=-0.014  Sum_probs=83.1

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036263          196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA  272 (305)
Q Consensus       196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  272 (305)
                      +...+..+...+.+.|++++|...|++...  | +...|..+..+|...|++++|...|++..+.. +-+...|..+..+
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~  113 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC  113 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence            456788888999999999999999999884  4 67889999999999999999999999998853 2256788889999


Q ss_pred             HhccCcHHHHHHHHHHHH
Q 036263          273 CSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       273 ~~~~g~~~~a~~~~~~m~  290 (305)
                      +.+.|++++|...|+...
T Consensus       114 ~~~lg~~~eA~~~~~~al  131 (151)
T 3gyz_A          114 QLRLKAPLKAKECFELVI  131 (151)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHH
Confidence            999999999999999988

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.43  E-value=1.5e-06  Score=62.94  Aligned_cols=99  Identities=11%  Similarity=-0.099  Sum_probs=79.9

Q ss_pred             CCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHH
Q 036263          158 VEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNS  233 (305)
Q Consensus       158 ~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~  233 (305)
                      +.| +...+..+...+...|++++|...|+...+.. +.+...|..+..+|...|++++|...|++...  | +...|..
T Consensus        16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   94 (148)
T 2vgx_A           16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH   94 (148)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred             CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence            345 45566777778888899999999999888775 56778888888888999999999999988763  3 5677888


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHC
Q 036263          234 IIVGFAVNGFVGEALEYFNLMQKG  257 (305)
Q Consensus       234 li~~~~~~g~~~~a~~~~~~m~~~  257 (305)
                      +..+|...|++++|...|++..+.
T Consensus        95 lg~~~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           95 AAECLLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH
Confidence            888889999999999999887764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.43  E-value=6.7e-06  Score=57.76  Aligned_cols=101  Identities=12%  Similarity=0.004  Sum_probs=67.7

Q ss_pred             HHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--Cc--------hhhHHH
Q 036263          164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RT--------LVSWNS  233 (305)
Q Consensus       164 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~--------~~~~~~  233 (305)
                      .+..+-..+.+.|++++|...|++.++.. +.+...|..+..+|.+.|++++|.+.+++..+  |+        ..+|..
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            45556666677777777777777776654 44566777777777777777777777776653  11        135666


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 036263          234 IIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFT  267 (305)
Q Consensus       234 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~  267 (305)
                      +..++...|++++|.+.|++...  ..||..+..
T Consensus        89 lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~  120 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVK  120 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHH
Confidence            67777778888888888887766  345655443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.42  E-value=6e-06  Score=68.53  Aligned_cols=128  Identities=9%  Similarity=0.002  Sum_probs=92.0

Q ss_pred             cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHhcCcCChhHHHHHHHHHhhcC
Q 036263          127 CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD--------------YLTIISVLNVCANVRTLGIGLWMHRYVPKQD  192 (305)
Q Consensus       127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~  192 (305)
                      ...|..+...+.+.|++++|...|++..+..-...              ...|..+..++.+.|++++|...++...+..
T Consensus       147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  226 (336)
T 1p5q_A          147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD  226 (336)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            44577888888999999999999988876432111              4677777777778888888888888777765


Q ss_pred             CCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHH-HHHHHHHH
Q 036263          193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEA-LEYFNLMQ  255 (305)
Q Consensus       193 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a-~~~~~~m~  255 (305)
                       +.+...|..+..+|...|++++|...|++..+  | +...+..+...+...|++++| ...++.|.
T Consensus       227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             45677777777777888888888877777763  2 456677777777777777776 34555553

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.42  E-value=8.1e-06  Score=57.25  Aligned_cols=94  Identities=6%  Similarity=-0.023  Sum_probs=75.7

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHh
Q 036263          130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR  209 (305)
Q Consensus       130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  209 (305)
                      +......+.+.|++++|++.|++..+.. +.+...|..+..++...|++++|...++..++.+ +.+...|..+..+|..
T Consensus        16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~   93 (126)
T 4gco_A           16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA   93 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence            5566777888888888888888876642 2357788888888888899999998888888875 5667888888888999


Q ss_pred             cCChHHHHHHHHhccc
Q 036263          210 FGCIEFARQVFQRMHK  225 (305)
Q Consensus       210 ~g~~~~a~~~~~~~~~  225 (305)
                      .|++++|.+.|++..+
T Consensus        94 ~~~~~~A~~~~~~al~  109 (126)
T 4gco_A           94 MREWSKAQRAYEDALQ  109 (126)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999998888764

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.41  E-value=6.8e-06  Score=65.69  Aligned_cols=195  Identities=7%  Similarity=-0.075  Sum_probs=129.5

Q ss_pred             hcCChhHHHHHHHHHHhCCCCCCH-hhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc---------
Q 036263           57 RSGCILEAALEFTRMRLYGTNPSH-ITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG---------  126 (305)
Q Consensus        57 ~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---------  126 (305)
                      ..++...|.+.|.+..+.  .|+. ..|.-++.+    |+.+.       .++.+.++..++...+.....         
T Consensus        18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~----g~~~~-------~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~   84 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRC----GDTDR-------VTLFRAWYSRRNFGQLSGSVQISMSTLNAR   84 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHT----TCCCH-------HHHHHHHHTGGGTTHHHHTTTCCGGGGCCE
T ss_pred             cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHc----cCCcH-------HHHHHHHHHHHHHHHHHHHhcCChhhhhhh
Confidence            689999999999999884  5542 333322211    11111       222222233333333333322         


Q ss_pred             ---ccc--------------HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHh
Q 036263          127 ---CDF--------------WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVP  189 (305)
Q Consensus       127 ---~~~--------------~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~  189 (305)
                         .+.              +-.+...+...|++++|.++|+.+...  .|+......+-..+.+.+++++|...|+...
T Consensus        85 ~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~  162 (282)
T 4f3v_A           85 IAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAG  162 (282)
T ss_dssp             EECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGG
T ss_pred             hccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhh
Confidence               111              234667788899999999999888764  3544455566668899999999999998654


Q ss_pred             hcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhccc-C-----chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 036263          190 KQDFKDN--VRVCNTLMDVYSRFGCIEFARQVFQRMHK-R-----TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT  261 (305)
Q Consensus       190 ~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  261 (305)
                      +.. .|.  ...+..+..++...|++++|.+.|++... +     ..........++.+.|+.++|..+|+++...  .|
T Consensus       163 ~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P  239 (282)
T 4f3v_A          163 KWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HP  239 (282)
T ss_dssp             GCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SC
T ss_pred             ccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC
Confidence            432 121  34678889999999999999999999863 2     2235666778889999999999999999985  46


Q ss_pred             CHHHHHHH
Q 036263          262 DEVSFTGA  269 (305)
Q Consensus       262 ~~~~~~~l  269 (305)
                      +......|
T Consensus       240 ~~~~~~aL  247 (282)
T 4f3v_A          240 EPKVAAAL  247 (282)
T ss_dssp             CHHHHHHH
T ss_pred             cHHHHHHH
Confidence            64444333

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.40  E-value=8.7e-06  Score=67.56  Aligned_cols=128  Identities=6%  Similarity=-0.131  Sum_probs=108.7

Q ss_pred             CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC---------------hhHHHHHHHHHHhcCChHHHHHHHHhccc
Q 036263          161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN---------------VRVCNTLMDVYSRFGCIEFARQVFQRMHK  225 (305)
Q Consensus       161 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~  225 (305)
                      +...+..+-..+.+.|++++|...|++..+.. +.+               ...|..+..+|.+.|++++|...+++..+
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  224 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE  224 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            35678888889999999999999999998875 223               58899999999999999999999999874


Q ss_pred             ---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH-HHHHHHHH
Q 036263          226 ---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDG-LQYFDIMK  290 (305)
Q Consensus       226 ---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a-~~~~~~m~  290 (305)
                         .+...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.|+.+++ ...++.|.
T Consensus       225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               367889999999999999999999999998853 23567888888899999999988 45666664

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.40  E-value=2.6e-05  Score=66.65  Aligned_cols=186  Identities=5%  Similarity=-0.139  Sum_probs=137.6

Q ss_pred             HHHHhcCChHHHHHHHHhcCc----------------------cccHHHHHHHHHcCCChHHHHHHHHHHHHc-CCCCCH
Q 036263          106 DMYAKFGRMDLATVVFDVMRG----------------------CDFWTALLNGFVKRDYFEEALEYFRVMQIS-GVEPDY  162 (305)
Q Consensus       106 ~~~~~~g~~~~a~~~~~~~~~----------------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~  162 (305)
                      ..+.+.|++++|++.|..+.+                      ...+..+...|...|++++|.+++...... +..++.
T Consensus        12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~   91 (434)
T 4b4t_Q           12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS   91 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence            346778999999999988743                      112678899999999999999999887542 112222


Q ss_pred             ----HHHHHHHHHhcCcCChhHHHHHHHHHhh----cCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhccc--------
Q 036263          163 ----LTIISVLNVCANVRTLGIGLWMHRYVPK----QDFKD-NVRVCNTLMDVYSRFGCIEFARQVFQRMHK--------  225 (305)
Q Consensus       163 ----~t~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------  225 (305)
                          .+.+.+-..+...|+.+.+..+++....    .+..+ -..++..+...|...|++++|..++++...        
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~  171 (434)
T 4b4t_Q           92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK  171 (434)
T ss_dssp             HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence                2233344455677889999998887653    22233 356788899999999999999999998752        


Q ss_pred             C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHC--CCC-C-C--HHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 036263          226 R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG--VFK-T-D--EVSFTGALTACSHAGLIEDGLQYFDIMKK  291 (305)
Q Consensus       226 ~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~-p-~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~  291 (305)
                      + .+..|..++..|...|++++|..++++....  .+. | .  ...+..+...+...|++++|...|.+..+
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            1 3467889999999999999999999886542  121 2 1  24566777788899999999998887763

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.39  E-value=1.2e-06  Score=66.81  Aligned_cols=159  Identities=12%  Similarity=-0.054  Sum_probs=71.5

Q ss_pred             hcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHH
Q 036263          110 KFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWM  184 (305)
Q Consensus       110 ~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~  184 (305)
                      ..|+++.+.+.++.-..     ...+..+...+...|++++|...|++..+.  .|+...+...        ....   .
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~---~   82 (198)
T 2fbn_A           16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLD---K   82 (198)
T ss_dssp             ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHH---H
T ss_pred             hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHH---H
Confidence            34555555544443221     334556666777777777777777766553  1110000000        0000   0


Q ss_pred             HHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 036263          185 HRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT  261 (305)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  261 (305)
                      ..       ......+..+..+|.+.|++++|...+++..+   .+...+..+..+|...|++++|...|++..+.. +-
T Consensus        83 ~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~  154 (198)
T 2fbn_A           83 KK-------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PN  154 (198)
T ss_dssp             HH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TT
T ss_pred             HH-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CC
Confidence            00       00124455555566666666666666665542   244555556666666666666666666655532 12


Q ss_pred             CHHHHHHHHHHHhccCcHHHHH-HHHHHH
Q 036263          262 DEVSFTGALTACSHAGLIEDGL-QYFDIM  289 (305)
Q Consensus       262 ~~~~~~~li~~~~~~g~~~~a~-~~~~~m  289 (305)
                      +...+..+..++...++.+++. ..+..+
T Consensus       155 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  183 (198)
T 2fbn_A          155 NLDIRNSYELCVNKLKEARKKDKLTFGGM  183 (198)
T ss_dssp             CHHHHHHHHHHHHHHHHHHC---------
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555554 333333

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.38  E-value=6.1e-06  Score=57.52  Aligned_cols=107  Identities=13%  Similarity=0.096  Sum_probs=74.4

Q ss_pred             HHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-c-------hhhHH
Q 036263          163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-T-------LVSWN  232 (305)
Q Consensus       163 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~-------~~~~~  232 (305)
                      ..+..+...+...|++++|...++...+.. +.+...+..+...|...|++++|...+++..+  | +       ..+|.
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            445556666677777777777777776654 44566777777777788888888887777653  1 2       56677


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036263          233 SIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA  272 (305)
Q Consensus       233 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  272 (305)
                      .+...+...|++++|.+.|++..+.  .|+......+...
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~  121 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA  121 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence            7888888888888888888888774  3565555444433

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.38  E-value=1.2e-05  Score=56.14  Aligned_cols=92  Identities=7%  Similarity=-0.093  Sum_probs=56.1

Q ss_pred             HHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHh
Q 036263          164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAV  240 (305)
Q Consensus       164 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~  240 (305)
                      .+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|...+++..+   .+...|..+..++..
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   84 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA   84 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            44445555566666666666666665554 34456666666666666666666666666552   244556666666666


Q ss_pred             cCChHHHHHHHHHHHH
Q 036263          241 NGFVGEALEYFNLMQK  256 (305)
Q Consensus       241 ~g~~~~a~~~~~~m~~  256 (305)
                      .|++++|...|++..+
T Consensus        85 ~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           85 VKEYASALETLDAART  100 (126)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             HhCHHHHHHHHHHHHH
Confidence            6666666666666655

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.37  E-value=1.8e-06  Score=62.54  Aligned_cols=94  Identities=11%  Similarity=0.054  Sum_probs=55.1

Q ss_pred             cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 036263          129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS  208 (305)
Q Consensus       129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  208 (305)
                      .+..+...+...|++++|...|++..... +.+...|..+-.++...|++++|...++...+.. +.+...+..+..+|.
T Consensus        23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~  100 (148)
T 2vgx_A           23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLL  100 (148)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence            34555556666666666666666655431 1245555555666666666666666666665554 344555666666666


Q ss_pred             hcCChHHHHHHHHhcc
Q 036263          209 RFGCIEFARQVFQRMH  224 (305)
Q Consensus       209 ~~g~~~~a~~~~~~~~  224 (305)
                      ..|++++|...|++..
T Consensus       101 ~~g~~~~A~~~~~~al  116 (148)
T 2vgx_A          101 QXGELAEAESGLFLAQ  116 (148)
T ss_dssp             HTTCHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHH
Confidence            6666666666666554

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.35  E-value=7.1e-06  Score=55.46  Aligned_cols=93  Identities=10%  Similarity=-0.035  Sum_probs=63.8

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 036263          197 VRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT--DEVSFTGALT  271 (305)
Q Consensus       197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~  271 (305)
                      ...+..+...+...|++++|...|++..+   .+...|..+...+...|++++|.+.+++..+.. +.  +...+..+..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~   84 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD   84 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence            44556666667777777777777776652   245666677777777777777777777776642 22  4566777777


Q ss_pred             HHhcc-CcHHHHHHHHHHHH
Q 036263          272 ACSHA-GLIEDGLQYFDIMK  290 (305)
Q Consensus       272 ~~~~~-g~~~~a~~~~~~m~  290 (305)
                      ++.+. |++++|.+.++...
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~  104 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAK  104 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHG
T ss_pred             HHHHHhCCHHHHHHHHHHHh
Confidence            77777 77777777777766

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.35  E-value=2.8e-06  Score=72.72  Aligned_cols=198  Identities=10%  Similarity=-0.081  Sum_probs=140.0

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCCHh-hH----HHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc
Q 036263           52 ISRHCRSGCILEAALEFTRMRLYGTNPSHI-TF----VTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG  126 (305)
Q Consensus        52 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~----~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  126 (305)
                      ...+.+.|++++|++.|.+..+........ ..    .....       .....+..+...|.+.|++++|.+.+..+..
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRN-------EQETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHH-------HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhh-------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            356788999999999999998753221110 00    00000       0112356788889999999999999988754


Q ss_pred             -----------cccHHHHHHHHHcCCChHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHhcCcCChhHHHHHHHHHhh
Q 036263          127 -----------CDFWTALLNGFVKRDYFEEALEYFRVMQI----SGVEPD-YLTIISVLNVCANVRTLGIGLWMHRYVPK  190 (305)
Q Consensus       127 -----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~  190 (305)
                                 ..+.+.+-..+...|+++.|..++++...    .+..+. ..++..+...+...|++++|..+++.+..
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~  163 (434)
T 4b4t_Q           84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR  163 (434)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence                       12234444555567899999999987643    233343 56778899999999999999999998754


Q ss_pred             c--C--CCC-ChhHHHHHHHHHHhcCChHHHHHHHHhccc-------C---chhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036263          191 Q--D--FKD-NVRVCNTLMDVYSRFGCIEFARQVFQRMHK-------R---TLVSWNSIIVGFAVNGFVGEALEYFNLMQ  255 (305)
Q Consensus       191 ~--~--~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~  255 (305)
                      .  +  -.+ ...++..++..|...|++++|..++++...       |   -...+..+...+...|++++|...|.+..
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            3  1  112 256788999999999999999999988763       1   12456677777888999999988877654


Q ss_pred             H
Q 036263          256 K  256 (305)
Q Consensus       256 ~  256 (305)
                      +
T Consensus       244 ~  244 (434)
T 4b4t_Q          244 E  244 (434)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.33  E-value=1.3e-05  Score=72.42  Aligned_cols=196  Identities=7%  Similarity=-0.084  Sum_probs=145.5

Q ss_pred             ChhHHHHHHHHHHhcCChHHHH-HHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcC---------CCCC
Q 036263           97 NVMVSTALLDMYAKFGRMDLAT-VVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISG---------VEPD  161 (305)
Q Consensus        97 ~~~~~~~ll~~~~~~g~~~~a~-~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---------~~p~  161 (305)
                      ...+|-.....+.+.|+.++|. .+|++...     ...|-..+....+.|+++.|.++|+.+....         -.|+
T Consensus       342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~  421 (679)
T 4e6h_A          342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT  421 (679)
T ss_dssp             CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence            4456666677777888988886 88888743     3346667778888999999999999987631         0142


Q ss_pred             ------------HHHHHHHHHHhcCcCChhHHHHHHHHHhhc-CCCCChhHHHHHHHHHHhc-CChHHHHHHHHhccc--
Q 036263          162 ------------YLTIISVLNVCANVRTLGIGLWMHRYVPKQ-DFKDNVRVCNTLMDVYSRF-GCIEFARQVFQRMHK--  225 (305)
Q Consensus       162 ------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~--  225 (305)
                                  ..+|...+....+.|..+.|..+|....+. + ......|......-.+. ++.+.|.++|+...+  
T Consensus       422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~  500 (679)
T 4e6h_A          422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF  500 (679)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred             chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC
Confidence                        336777778778889999999999999876 3 22344444433333344 458999999999875  


Q ss_pred             -CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHHHHHh
Q 036263          226 -RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT--DEVSFTGALTACSHAGLIEDGLQYFDIMKKIY  293 (305)
Q Consensus       226 -~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  293 (305)
                       .+...|...+.-....|+.+.|..+|++.......+  ....|...+..-.+.|+.+.+.++.+.+.+..
T Consensus       501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~  571 (679)
T 4e6h_A          501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF  571 (679)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred             CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence             355667788888888999999999999998864322  33577777777778999999999999998433

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.30  E-value=3.7e-05  Score=52.29  Aligned_cols=92  Identities=13%  Similarity=-0.031  Sum_probs=51.3

Q ss_pred             HHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHh
Q 036263          164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAV  240 (305)
Q Consensus       164 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~  240 (305)
                      .+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..+  | +...+..+..++..
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~   84 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF   84 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            34444455555555555555555555443 33455555555556666666666666655542  2 34455555666666


Q ss_pred             cCChHHHHHHHHHHHH
Q 036263          241 NGFVGEALEYFNLMQK  256 (305)
Q Consensus       241 ~g~~~~a~~~~~~m~~  256 (305)
                      .|++++|.+.+++..+
T Consensus        85 ~~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           85 LNRFEEAKRTYEEGLK  100 (118)
T ss_dssp             TTCHHHHHHHHHHHHT
T ss_pred             HhhHHHHHHHHHHHHH
Confidence            6666666666666555

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.29  E-value=1.4e-05  Score=56.44  Aligned_cols=95  Identities=8%  Similarity=-0.169  Sum_probs=68.3

Q ss_pred             CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHH
Q 036263          161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVG  237 (305)
Q Consensus       161 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~  237 (305)
                      +...+..+...+...|++++|...++...+.. +.+...|..+..+|...|++++|...+++..+   .+...|..+..+
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   86 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   86 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence            45666777777777777777777777776664 44566777777777777777777777777653   245667777777


Q ss_pred             HHhcCChHHHHHHHHHHHH
Q 036263          238 FAVNGFVGEALEYFNLMQK  256 (305)
Q Consensus       238 ~~~~g~~~~a~~~~~~m~~  256 (305)
                      |...|++++|...|++..+
T Consensus        87 ~~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           87 QLEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHH
Confidence            7777888888777777665

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.29  E-value=9.3e-06  Score=58.14  Aligned_cols=95  Identities=11%  Similarity=-0.150  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHH
Q 036263          162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGF  238 (305)
Q Consensus       162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~  238 (305)
                      ...+..+...+...|++++|...|+...+.+ +.+...|..+..+|.+.|++++|...|++...   .+...|..+..+|
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   96 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH   96 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            3445555666777788888888888777765 55677777777788888888888888877763   2556677777778


Q ss_pred             HhcCChHHHHHHHHHHHHC
Q 036263          239 AVNGFVGEALEYFNLMQKG  257 (305)
Q Consensus       239 ~~~g~~~~a~~~~~~m~~~  257 (305)
                      ...|++++|...|++..+.
T Consensus        97 ~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           97 LQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            8888888888888777663

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.27  E-value=2.5e-06  Score=64.96  Aligned_cols=91  Identities=11%  Similarity=-0.021  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhccc---Cc----------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 036263          199 VCNTLMDVYSRFGCIEFARQVFQRMHK---RT----------------LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF  259 (305)
Q Consensus       199 ~~~~li~~~~~~g~~~~a~~~~~~~~~---~~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  259 (305)
                      .+..+...+.+.|++++|...|++..+   .+                ...|..+..+|...|++++|...+++..+.. 
T Consensus        40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-  118 (198)
T 2fbn_A           40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-  118 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence            344444555555555555555555442   11                3678888999999999999999999988853 


Q ss_pred             CCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          260 KTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       260 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      +.+...+..+..++...|++++|...|+...
T Consensus       119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al  149 (198)
T 2fbn_A          119 KNNVKALYKLGVANMYFGFLEEAKENLYKAA  149 (198)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            3467888889999999999999999999887

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.27  E-value=2.2e-05  Score=57.64  Aligned_cols=94  Identities=12%  Similarity=-0.063  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHH
Q 036263          162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGF  238 (305)
Q Consensus       162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~  238 (305)
                      ...+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|...|++..+   .+...|..+..+|
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   89 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            4455556666666677777777776666654 44566666677777777777777777766653   2456666667777


Q ss_pred             HhcCChHHHHHHHHHHHH
Q 036263          239 AVNGFVGEALEYFNLMQK  256 (305)
Q Consensus       239 ~~~g~~~~a~~~~~~m~~  256 (305)
                      ...|++++|...|++..+
T Consensus        90 ~~~g~~~~A~~~~~~al~  107 (164)
T 3sz7_A           90 FDMADYKGAKEAYEKGIE  107 (164)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHH
Confidence            777777777777776655

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.24  E-value=5.8e-06  Score=58.10  Aligned_cols=101  Identities=11%  Similarity=0.035  Sum_probs=81.4

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCC----HHHHH
Q 036263          197 VRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV--FKTD----EVSFT  267 (305)
Q Consensus       197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~~~~  267 (305)
                      ...+..+...+.+.|++++|...|++..+  | +...|..+..+|...|++++|++.+++..+.+  ..++    ..+|.
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            45677889999999999999999999874  3 67889999999999999999999999987632  1122    24677


Q ss_pred             HHHHHHhccCcHHHHHHHHHHHHHHhCCCCCcc
Q 036263          268 GALTACSHAGLIEDGLQYFDIMKKIYRVSPQIE  300 (305)
Q Consensus       268 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~  300 (305)
                      .+-.++...|++++|++.|+... .  ..|+++
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal-~--~~~~~~  117 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSL-S--EFRDPE  117 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH-H--HSCCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHH-h--hCcCHH
Confidence            77888899999999999999877 3  345544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.23  E-value=3.7e-05  Score=52.26  Aligned_cols=94  Identities=14%  Similarity=0.019  Sum_probs=81.6

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036263          196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA  272 (305)
Q Consensus       196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  272 (305)
                      ....+..+...+...|++++|...|++..+   .+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~   81 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA   81 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence            355678888899999999999999999863   367788889999999999999999999988853 2357788888999


Q ss_pred             HhccCcHHHHHHHHHHHH
Q 036263          273 CSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       273 ~~~~g~~~~a~~~~~~m~  290 (305)
                      +...|++++|...++...
T Consensus        82 ~~~~~~~~~A~~~~~~~~   99 (118)
T 1elw_A           82 LEFLNRFEEAKRTYEEGL   99 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHH
Confidence            999999999999999887

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.23  E-value=1.4e-05  Score=53.97  Aligned_cols=92  Identities=8%  Similarity=-0.105  Sum_probs=50.4

Q ss_pred             HHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C---chhhHHHHHHHHH
Q 036263          165 IISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R---TLVSWNSIIVGFA  239 (305)
Q Consensus       165 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~---~~~~~~~li~~~~  239 (305)
                      +..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..+  |   +...+..+...+.
T Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~   87 (112)
T 2kck_A            9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR   87 (112)
T ss_dssp             GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence            3444444555555555555555555443 33445555555556666666666666655542  2   3455555566666


Q ss_pred             hc-CChHHHHHHHHHHHHC
Q 036263          240 VN-GFVGEALEYFNLMQKG  257 (305)
Q Consensus       240 ~~-g~~~~a~~~~~~m~~~  257 (305)
                      .. |++++|.+.+++....
T Consensus        88 ~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           88 YIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             TCSSCSHHHHHHHHHHGGG
T ss_pred             HHhCCHHHHHHHHHHHhhc
Confidence            66 6666666666665553

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.21  E-value=7.1e-05  Score=52.03  Aligned_cols=94  Identities=9%  Similarity=-0.032  Sum_probs=76.5

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHh
Q 036263          130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR  209 (305)
Q Consensus       130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  209 (305)
                      |..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|...++...+.. +.+...|..+..+|..
T Consensus         7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~   84 (126)
T 3upv_A            7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA   84 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence            5566777888888888888888877642 2357788888888899999999999999888875 5567888888999999


Q ss_pred             cCChHHHHHHHHhccc
Q 036263          210 FGCIEFARQVFQRMHK  225 (305)
Q Consensus       210 ~g~~~~a~~~~~~~~~  225 (305)
                      .|++++|...|++..+
T Consensus        85 ~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           85 VKEYASALETLDAART  100 (126)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             HhCHHHHHHHHHHHHH
Confidence            9999999999888763

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.18  E-value=5.7e-05  Score=53.22  Aligned_cols=97  Identities=5%  Similarity=-0.162  Sum_probs=84.9

Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036263          194 KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGAL  270 (305)
Q Consensus       194 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li  270 (305)
                      +.+...+..+...+...|++++|...|++...   .+...|..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   84 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   84 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence            35678899999999999999999999998874   357889999999999999999999999998854 23577888999


Q ss_pred             HHHhccCcHHHHHHHHHHHHH
Q 036263          271 TACSHAGLIEDGLQYFDIMKK  291 (305)
Q Consensus       271 ~~~~~~g~~~~a~~~~~~m~~  291 (305)
                      .++...|++++|...|+...+
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHH
Confidence            999999999999999998873

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.18  E-value=3.4e-05  Score=55.12  Aligned_cols=95  Identities=13%  Similarity=0.042  Sum_probs=79.0

Q ss_pred             cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 036263          129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS  208 (305)
Q Consensus       129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  208 (305)
                      .+..+...+.+.|++++|...|++..... +.+...|..+..++...|++++|...++...+.. +.+...+..+..+|.
T Consensus        20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~   97 (142)
T 2xcb_A           20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL   97 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence            35566777888999999999999887652 2367778888888999999999999999998876 566788888999999


Q ss_pred             hcCChHHHHHHHHhccc
Q 036263          209 RFGCIEFARQVFQRMHK  225 (305)
Q Consensus       209 ~~g~~~~a~~~~~~~~~  225 (305)
                      ..|++++|...|++..+
T Consensus        98 ~~g~~~~A~~~~~~al~  114 (142)
T 2xcb_A           98 QLGDLDGAESGFYSARA  114 (142)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            99999999999988763

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.17  E-value=2.2e-05  Score=56.76  Aligned_cols=127  Identities=10%  Similarity=0.003  Sum_probs=71.6

Q ss_pred             HHHHHHHHhcCcCChhHHHHHHHHHhhcCC---CC--ChhHHHHHHHHHHhcCChHHHHHHHHhccc-----C----chh
Q 036263          164 TIISVLNVCANVRTLGIGLWMHRYVPKQDF---KD--NVRVCNTLMDVYSRFGCIEFARQVFQRMHK-----R----TLV  229 (305)
Q Consensus       164 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~----~~~  229 (305)
                      ++..+...+...|++++|...+++..+...   .+  -..++..+...|...|++++|.+.+++..+     +    ...
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            334444444455555555555544433210   00  013455566666666666666666666542     1    134


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          230 SWNSIIVGFAVNGFVGEALEYFNLMQKG----VFKT-DEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       230 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      .+..+...+...|++++|.+.+++..+.    +-.+ ...++..+...+...|++++|.+.+++..
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  156 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  156 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            5666666777777777777777665432    1111 13456666777778888888888887766

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.16  E-value=6.4e-05  Score=55.07  Aligned_cols=97  Identities=6%  Similarity=-0.086  Sum_probs=84.7

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036263          195 DNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT  271 (305)
Q Consensus       195 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~  271 (305)
                      .+...+..+...+.+.|++++|...|++..+  | +...|..+..+|...|++++|...|++..+.. +-+...|..+..
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~   87 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            3466788889999999999999999999874  3 67889999999999999999999999998854 235788889999


Q ss_pred             HHhccCcHHHHHHHHHHHHHH
Q 036263          272 ACSHAGLIEDGLQYFDIMKKI  292 (305)
Q Consensus       272 ~~~~~g~~~~a~~~~~~m~~~  292 (305)
                      ++...|++++|...|+...+.
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHh
Confidence            999999999999999998843

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.16  E-value=1.5e-05  Score=57.68  Aligned_cols=127  Identities=10%  Similarity=0.030  Sum_probs=77.3

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHhcCcCChhHHHHHHHHHhhc----CCCC-ChhH
Q 036263          130 WTALLNGFVKRDYFEEALEYFRVMQISGV---EP--DYLTIISVLNVCANVRTLGIGLWMHRYVPKQ----DFKD-NVRV  199 (305)
Q Consensus       130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~  199 (305)
                      +..+...+...|++++|...+++..+...   .+  ...++..+...+...|++++|...++...+.    +-++ ....
T Consensus        12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~   91 (164)
T 3ro3_A           12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS   91 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence            44455555555666666655555433210   01  1235556666666777777777777665432    1111 1445


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhccc-----C----chhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263          200 CNTLMDVYSRFGCIEFARQVFQRMHK-----R----TLVSWNSIIVGFAVNGFVGEALEYFNLMQK  256 (305)
Q Consensus       200 ~~~li~~~~~~g~~~~a~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  256 (305)
                      +..+...+...|++++|.+.+++..+     .    ....+..+...+...|++++|.+.+++..+
T Consensus        92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            66777777888888888887777652     1    234667777888888888888888887654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.15  E-value=0.00047  Score=56.94  Aligned_cols=222  Identities=11%  Similarity=0.029  Sum_probs=153.5

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhcC
Q 036263           47 QWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFG-RMDLATVVFDVMR  125 (305)
Q Consensus        47 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~  125 (305)
                      .++.+-....+.+..++|+++++++..  +.|+..|                 +|+.--.++...| .+++++..++.+.
T Consensus        56 ~~~~~r~~~~~~e~se~AL~lt~~~L~--~nP~~yt-----------------aWn~R~~iL~~l~~~l~eEL~~~~~~L  116 (349)
T 3q7a_A           56 AMDYFRAIAAKEEKSERALELTEIIVR--MNPAHYT-----------------VWQYRFSLLTSLNKSLEDELRLMNEFA  116 (349)
T ss_dssp             HHHHHHHHHHTTCCSHHHHHHHHHHHH--HCTTCHH-----------------HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHH--hCchhHH-----------------HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            344444455556666799999999987  4555332                 3455555566677 5999999998885


Q ss_pred             c-----cccHHHHHHHHHcC-C-ChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChh--------HHHHHHHHHh
Q 036263          126 G-----CDFWTALLNGFVKR-D-YFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLG--------IGLWMHRYVP  189 (305)
Q Consensus       126 ~-----~~~~~~li~~~~~~-g-~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~--------~a~~~~~~~~  189 (305)
                      .     ..+|+.-...+.+. + ++++++++++.+.+.  .| +...|+.-...+.+.+.++        ++.+.++.+.
T Consensus       117 ~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I  194 (349)
T 3q7a_A          117 VQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEML  194 (349)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred             HhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHH
Confidence            4     34466555555554 6 789999999998864  34 5667766555555555555        8899999999


Q ss_pred             hcCCCCChhHHHHHHHHHHhcCC-------hHHHHHHHHhccc--C-chhhHHHHHHHHHhcCCh---------------
Q 036263          190 KQDFKDNVRVCNTLMDVYSRFGC-------IEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFV---------------  244 (305)
Q Consensus       190 ~~~~~~~~~~~~~li~~~~~~g~-------~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~---------------  244 (305)
                      +.. +-|...|+.-...+.+.++       ++++.+.+++...  | |...|+-+-..+.+.|+.               
T Consensus       195 ~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~  273 (349)
T 3q7a_A          195 RVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASK  273 (349)
T ss_dssp             HHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--
T ss_pred             HhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccccccccccccc
Confidence            886 5678888888888877776       6788888877763  3 667887776667666654               


Q ss_pred             -----HHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          245 -----GEALEYFNLMQKGV-----FKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       245 -----~~a~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                           ....++..++...+     -.++...+..+...|...|+.++|.++++.+.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~  329 (349)
T 3q7a_A          274 LNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS  329 (349)
T ss_dssp             ------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence                 33344444443322     13678889999999999999999999999986

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.15  E-value=0.00012  Score=52.01  Aligned_cols=95  Identities=7%  Similarity=-0.111  Sum_probs=65.6

Q ss_pred             CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHH
Q 036263          161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN----VRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNS  233 (305)
Q Consensus       161 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~  233 (305)
                      +...+..+...+...|++++|...++...+..  |+    ...+..+..+|...|++++|...+++..+  | +...|..
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  104 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR  104 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence            45566666667777777777777777776653  33    56666777777777777777777776653  2 4566667


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHC
Q 036263          234 IIVGFAVNGFVGEALEYFNLMQKG  257 (305)
Q Consensus       234 li~~~~~~g~~~~a~~~~~~m~~~  257 (305)
                      +..++...|++++|...|++..+.
T Consensus       105 ~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          105 RSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHc
Confidence            777777777777777777777663

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.10  E-value=3e-05  Score=53.83  Aligned_cols=96  Identities=10%  Similarity=0.020  Sum_probs=67.2

Q ss_pred             cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCC--CCC----hhHHHH
Q 036263          129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF--KDN----VRVCNT  202 (305)
Q Consensus       129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~  202 (305)
                      .|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++...+...  .++    ..++..
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            35566667777777777777777766542 23566677777777788888888888877766531  112    566777


Q ss_pred             HHHHHHhcCChHHHHHHHHhccc
Q 036263          203 LMDVYSRFGCIEFARQVFQRMHK  225 (305)
Q Consensus       203 li~~~~~~g~~~~a~~~~~~~~~  225 (305)
                      +..+|...|++++|.+.|++..+
T Consensus        85 la~~~~~~~~~~~A~~~~~~~~~  107 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKSLA  107 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHH
Confidence            77888888888888888877763

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.10  E-value=6e-05  Score=52.28  Aligned_cols=90  Identities=12%  Similarity=-0.010  Sum_probs=61.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 036263          200 CNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA  276 (305)
Q Consensus       200 ~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~  276 (305)
                      +..+...+.+.|++++|...|++..+  | +...|..+..++...|++++|...|++..+.. +-+...+..+..++.+.
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence            34455666677777777777777663  3 55667777777777777777777777776642 12455666677777777


Q ss_pred             CcHHHHHHHHHHHH
Q 036263          277 GLIEDGLQYFDIMK  290 (305)
Q Consensus       277 g~~~~a~~~~~~m~  290 (305)
                      |++++|+..++...
T Consensus        99 g~~~~A~~~~~~al  112 (121)
T 1hxi_A           99 HNANAALASLRAWL  112 (121)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            77777777777666

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.09  E-value=7.8e-05  Score=53.08  Aligned_cols=95  Identities=9%  Similarity=-0.092  Sum_probs=83.0

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHhccc--Cc----hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 036263          195 DNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RT----LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTG  268 (305)
Q Consensus       195 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~  268 (305)
                      .+...+..+...+...|++++|...|++..+  |+    ...|..+...|...|++++|...+++..+.. +.+...+..
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~  104 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR  104 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence            4577888899999999999999999999874  44    6788889999999999999999999988753 236778888


Q ss_pred             HHHHHhccCcHHHHHHHHHHHH
Q 036263          269 ALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       269 li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      +..++...|++++|...|+...
T Consensus       105 ~a~~~~~~~~~~~A~~~~~~al  126 (148)
T 2dba_A          105 RSQALEKLGRLDQAVLDLQRCV  126 (148)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHH
Confidence            8899999999999999999888

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.08  E-value=4.4e-05  Score=66.45  Aligned_cols=120  Identities=8%  Similarity=-0.110  Sum_probs=82.9

Q ss_pred             HHcCCChHHHHHHHHHHHHc---CCC---C-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhc-----C--CCCChhHHHH
Q 036263          137 FVKRDYFEEALEYFRVMQIS---GVE---P-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQ-----D--FKDNVRVCNT  202 (305)
Q Consensus       137 ~~~~g~~~~a~~~~~~m~~~---g~~---p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~  202 (305)
                      +...|++++|+.++++..+.   -+-   | ...+++.|..+|...|++++|..++++..+.     |  -+....+++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            44678889998888776542   122   2 2667889999999999999999988876542     2  1123567888


Q ss_pred             HHHHHHhcCChHHHHHHHHhccc----------C-chhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263          203 LMDVYSRFGCIEFARQVFQRMHK----------R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQK  256 (305)
Q Consensus       203 li~~~~~~g~~~~a~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  256 (305)
                      |...|...|++++|+.++++..+          | ...+.+.+-.++...+.+++|..+|.++++
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88899999999999888776652          1 123444555556666666666666666654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.07  E-value=1.6e-05  Score=69.21  Aligned_cols=113  Identities=11%  Similarity=0.016  Sum_probs=54.6

Q ss_pred             hcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHH
Q 036263          172 CANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEAL  248 (305)
Q Consensus       172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~  248 (305)
                      +.+.|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|.+.+++..+   .+...|..+..+|...|++++|.
T Consensus        16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~   94 (477)
T 1wao_1           16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL   94 (477)
T ss_dssp             TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            344555555555555555543 33355555555555555555555555555542   23445555555555566666666


Q ss_pred             HHHHHHHHCCCCC-CHHHHHHHHHH--HhccCcHHHHHHHHH
Q 036263          249 EYFNLMQKGVFKT-DEVSFTGALTA--CSHAGLIEDGLQYFD  287 (305)
Q Consensus       249 ~~~~~m~~~g~~p-~~~~~~~li~~--~~~~g~~~~a~~~~~  287 (305)
                      +.|++..+..  | +...+..+..+  +.+.|++++|++.++
T Consensus        95 ~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           95 RDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            6655555432  2 12222222222  455555666555554

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.06  E-value=4.3e-05  Score=53.04  Aligned_cols=87  Identities=8%  Similarity=-0.045  Sum_probs=46.2

Q ss_pred             HHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChH
Q 036263          169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVG  245 (305)
Q Consensus       169 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~  245 (305)
                      ...+.+.|++++|...++...+.. +.+...|..+..++...|++++|...|++..+  | +...+..+..++...|+++
T Consensus        24 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~  102 (121)
T 1hxi_A           24 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN  102 (121)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence            334445555555555555555543 33455555555555555555555555555542  2 3345555555555555555


Q ss_pred             HHHHHHHHHHH
Q 036263          246 EALEYFNLMQK  256 (305)
Q Consensus       246 ~a~~~~~~m~~  256 (305)
                      +|...+++..+
T Consensus       103 ~A~~~~~~al~  113 (121)
T 1hxi_A          103 AALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHH
Confidence            55555555544

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.05  E-value=1.8e-05  Score=63.83  Aligned_cols=94  Identities=13%  Similarity=-0.019  Sum_probs=82.4

Q ss_pred             cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHH
Q 036263          129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY  207 (305)
Q Consensus       129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  207 (305)
                      .+..+...+.+.|++++|...|++..+.  .| +...+..+..++...|++++|...++...+.. +.+...+..+..+|
T Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~   82 (281)
T 2c2l_A            6 ELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ   82 (281)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            3566778899999999999999998775  45 67888899999999999999999999998875 56788899999999


Q ss_pred             HhcCChHHHHHHHHhccc
Q 036263          208 SRFGCIEFARQVFQRMHK  225 (305)
Q Consensus       208 ~~~g~~~~a~~~~~~~~~  225 (305)
                      ...|++++|...|++..+
T Consensus        83 ~~~g~~~~A~~~~~~al~  100 (281)
T 2c2l_A           83 LEMESYDEAIANLQRAYS  100 (281)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            999999999999998874

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.05  E-value=3.6e-05  Score=67.03  Aligned_cols=112  Identities=11%  Similarity=0.008  Sum_probs=50.2

Q ss_pred             HcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHH
Q 036263          138 VKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFA  216 (305)
Q Consensus       138 ~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  216 (305)
                      .+.|++++|.+.+++..+.  .| +...+..+..++.+.|++++|...+++..+.. +.+...+..+..+|.+.|++++|
T Consensus        17 ~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA   93 (477)
T 1wao_1           17 FKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA   93 (477)
T ss_dssp             TTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence            3445555555555544432  22 24444555555555555555555555555443 33344455555555555555555


Q ss_pred             HHHHHhccc--C-chhhHHHHHHH--HHhcCChHHHHHHHH
Q 036263          217 RQVFQRMHK--R-TLVSWNSIIVG--FAVNGFVGEALEYFN  252 (305)
Q Consensus       217 ~~~~~~~~~--~-~~~~~~~li~~--~~~~g~~~~a~~~~~  252 (305)
                      .+.|++..+  | +...+..+..+  +.+.|++++|.+.++
T Consensus        94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            555555432  1 22233333333  444455555555554

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.04  E-value=0.0033  Score=51.08  Aligned_cols=193  Identities=8%  Similarity=-0.010  Sum_probs=143.7

Q ss_pred             chHhHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHH----Hhc---CCh
Q 036263           44 TTVQWTSSISRHCRSG--CILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMY----AKF---GRM  114 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~----~~~---g~~  114 (305)
                      +...||.--..+...|  ++++++++++.+...  .|...                 .+|+.--..+    .+.   +++
T Consensus        66 ~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--nPk~y-----------------~aW~~R~~iL~~~~~~l~~~~~~  126 (306)
T 3dra_A           66 HYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--NEKNY-----------------QIWNYRQLIIGQIMELNNNDFDP  126 (306)
T ss_dssp             CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--CTTCC-----------------HHHHHHHHHHHHHHHHTTTCCCT
T ss_pred             HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--CcccH-----------------HHHHHHHHHHHHHHHhccccCCH
Confidence            4556887777888888  999999999999874  34321                 1222222223    344   789


Q ss_pred             HHHHHHHHhcCc-----cccHHHHHHHHHcCCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCC------hhHH
Q 036263          115 DLATVVFDVMRG-----CDFWTALLNGFVKRDYFE--EALEYFRVMQISGVEPDYLTIISVLNVCANVRT------LGIG  181 (305)
Q Consensus       115 ~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~------~~~a  181 (305)
                      ++++.+++.+.+     -..|+--...+.+.|.++  ++++.++++.+... -|...|+.-...+...+.      ++++
T Consensus       127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~eE  205 (306)
T 3dra_A          127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDEE  205 (306)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHHH
Confidence            999999988854     345666666677788888  99999999988642 256667665555666665      8889


Q ss_pred             HHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHH-HHHHHHhccc------CchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 036263          182 LWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF-ARQVFQRMHK------RTLVSWNSIIVGFAVNGFVGEALEYFNLM  254 (305)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m  254 (305)
                      .+.++.+++.. +-|...|+-+-..+.+.|+..+ +..+..++.+      .+...+..+...|.+.|+.++|.++++.+
T Consensus       206 l~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l  284 (306)
T 3dra_A          206 LNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL  284 (306)
T ss_dssp             HHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            99999998886 6788899999888888888444 5567776553      36678888999999999999999999999


Q ss_pred             HHC
Q 036263          255 QKG  257 (305)
Q Consensus       255 ~~~  257 (305)
                      .+.
T Consensus       285 ~~~  287 (306)
T 3dra_A          285 KSK  287 (306)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            863

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.00  E-value=7.9e-05  Score=64.51  Aligned_cols=127  Identities=9%  Similarity=-0.043  Sum_probs=93.8

Q ss_pred             cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHhcCcCChhHHHHHHHHHhh
Q 036263          127 CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPD----------------YLTIISVLNVCANVRTLGIGLWMHRYVPK  190 (305)
Q Consensus       127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~  190 (305)
                      ...|..+...+.+.|++++|...|++..+.  .|+                ...|..+..++.+.|++++|...+++..+
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  345 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG  345 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            345777888889999999999999887663  232                46777788888888888888888888887


Q ss_pred             cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHH-HHHHHHH
Q 036263          191 QDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALE-YFNLMQK  256 (305)
Q Consensus       191 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~-~~~~m~~  256 (305)
                      .. +.+...|..+..+|...|++++|...|++..+  | +...+..+...+...++++++.+ .++.|..
T Consensus       346 ~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~  414 (457)
T 1kt0_A          346 LD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK  414 (457)
T ss_dssp             HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             cC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            75 55677888888888888888888888888764  2 45677777777777777776653 4555543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.97  E-value=0.00022  Score=49.49  Aligned_cols=85  Identities=9%  Similarity=-0.040  Sum_probs=42.8

Q ss_pred             hcCcCChhHHHHHHHHHhhcCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHhccc--C-c---hhhHHHHHHHHHhcC
Q 036263          172 CANVRTLGIGLWMHRYVPKQDFKDNV---RVCNTLMDVYSRFGCIEFARQVFQRMHK--R-T---LVSWNSIIVGFAVNG  242 (305)
Q Consensus       172 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~---~~~~~~li~~~~~~g  242 (305)
                      +...|++++|...++.+.+.. +.+.   ..+..+..++.+.|++++|...|++..+  | +   ...+..+..++...|
T Consensus        12 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g   90 (129)
T 2xev_A           12 ALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEG   90 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT
T ss_pred             HHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcC
Confidence            344455555555555444432 1122   3444455555555555555555555542  2 1   334455555566666


Q ss_pred             ChHHHHHHHHHHHHC
Q 036263          243 FVGEALEYFNLMQKG  257 (305)
Q Consensus       243 ~~~~a~~~~~~m~~~  257 (305)
                      ++++|...|++..+.
T Consensus        91 ~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           91 KNTEAQQTLQQVATQ  105 (129)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            666666666665553

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.96  E-value=0.00012  Score=50.82  Aligned_cols=93  Identities=12%  Similarity=-0.036  Sum_probs=69.4

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC---hhHHHH
Q 036263          130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDY----LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN---VRVCNT  202 (305)
Q Consensus       130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~  202 (305)
                      +..+...+...|++++|...|++..+..  |+.    ..+..+..++...|++++|...++...+.. +.+   ...+..
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~   81 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLK   81 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHH
Confidence            3445667777888888888888876642  322    466677778888888888888888887764 333   566777


Q ss_pred             HHHHHHhcCChHHHHHHHHhccc
Q 036263          203 LMDVYSRFGCIEFARQVFQRMHK  225 (305)
Q Consensus       203 li~~~~~~g~~~~a~~~~~~~~~  225 (305)
                      +..+|.+.|++++|...|+++.+
T Consensus        82 la~~~~~~g~~~~A~~~~~~~~~  104 (129)
T 2xev_A           82 LGLSQYGEGKNTEAQQTLQQVAT  104 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHH
Confidence            88888888889888888888764

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.94  E-value=1.7e-05  Score=54.58  Aligned_cols=81  Identities=11%  Similarity=-0.082  Sum_probs=34.6

Q ss_pred             CChhHHHHHHHHHhhcC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHH
Q 036263          176 RTLGIGLWMHRYVPKQD--FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEY  250 (305)
Q Consensus       176 ~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~  250 (305)
                      |++++|...|++..+.+  -+.+...+..+..+|...|++++|...|++..+  | +...+..+..++...|++++|...
T Consensus         4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~   83 (117)
T 3k9i_A            4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL   83 (117)
T ss_dssp             ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence            34444444444444432  112233444444444445555555555444432  1 334444444445555555555555


Q ss_pred             HHHHHH
Q 036263          251 FNLMQK  256 (305)
Q Consensus       251 ~~~m~~  256 (305)
                      +++..+
T Consensus        84 ~~~al~   89 (117)
T 3k9i_A           84 LLKIIA   89 (117)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544433

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.94  E-value=0.00012  Score=53.43  Aligned_cols=65  Identities=12%  Similarity=0.081  Sum_probs=46.0

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 036263          197 VRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE  263 (305)
Q Consensus       197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~  263 (305)
                      ...|..+..+|.+.|++++|...+++..+   .+...|..+..+|...|++++|...|++..+.  .|+.
T Consensus        63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~  130 (162)
T 3rkv_A           63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA  130 (162)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence            45677777777777777777777777653   35567777777777788888888877777763  4543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.93  E-value=6.2e-05  Score=62.45  Aligned_cols=141  Identities=11%  Similarity=-0.051  Sum_probs=68.5

Q ss_pred             cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 036263          129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS  208 (305)
Q Consensus       129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  208 (305)
                      .+..+...+.+.|++++|...|++....  .|+...       +...++.+++...+.          ...|..+..+|.
T Consensus       181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~  241 (338)
T 2if4_A          181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI  241 (338)
T ss_dssp             HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence            3667777888888999999888886653  454331       122233333322211          125666667777


Q ss_pred             hcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHH-HhccCcHHHHH
Q 036263          209 RFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE-VSFTGALTA-CSHAGLIEDGL  283 (305)
Q Consensus       209 ~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~-~~~~g~~~~a~  283 (305)
                      +.|++++|...+++..+   .+...|..+..+|...|++++|...|++..+.  .|+. ..+..+... ....+..+.+.
T Consensus       242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~  319 (338)
T 2if4_A          242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQK  319 (338)
T ss_dssp             TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777776653   25566777777777777777777777776553  3432 333333333 22345556666


Q ss_pred             HHHHHHH
Q 036263          284 QYFDIMK  290 (305)
Q Consensus       284 ~~~~~m~  290 (305)
                      ..|..|.
T Consensus       320 ~~~~~~l  326 (338)
T 2if4_A          320 EMYKGIF  326 (338)
T ss_dssp             -------
T ss_pred             HHHHHhh
Confidence            6666665

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.93  E-value=2.2e-05  Score=54.04  Aligned_cols=86  Identities=10%  Similarity=-0.009  Sum_probs=65.4

Q ss_pred             cCCChHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHH
Q 036263          139 KRDYFEEALEYFRVMQISGV-EP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFA  216 (305)
Q Consensus       139 ~~g~~~~a~~~~~~m~~~g~-~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  216 (305)
                      ..|++++|...|++..+.+. .| +...+..+..++...|++++|...+++..+.. +-+...+..+..+|.+.|++++|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence            46788899999988876431 13 45677888888889999999999999988875 55678888888999999999999


Q ss_pred             HHHHHhccc
Q 036263          217 RQVFQRMHK  225 (305)
Q Consensus       217 ~~~~~~~~~  225 (305)
                      ...+++...
T Consensus        81 ~~~~~~al~   89 (117)
T 3k9i_A           81 VELLLKIIA   89 (117)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998888763

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.92  E-value=0.00013  Score=61.37  Aligned_cols=87  Identities=9%  Similarity=-0.070  Sum_probs=64.5

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 036263          196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT-DEVSFTGALT  271 (305)
Q Consensus       196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~  271 (305)
                      +...|..+..+|.+.|++++|...+++..+   .+...|..+..+|...|++++|.+.|++..+.  .| +...+..+..
T Consensus       272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~  349 (370)
T 1ihg_A          272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLK  349 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            456777888888888888888888888764   25667788888888888888888888888774  34 4556666666


Q ss_pred             HHhccCcHHHHHH
Q 036263          272 ACSHAGLIEDGLQ  284 (305)
Q Consensus       272 ~~~~~g~~~~a~~  284 (305)
                      .+...++.+++.+
T Consensus       350 ~~~~~~~~~~a~k  362 (370)
T 1ihg_A          350 VKQKIKAQKDKEK  362 (370)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666666543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.89  E-value=0.00021  Score=61.88  Aligned_cols=125  Identities=6%  Similarity=-0.136  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC---------------hhHHHHHHHHHHhcCChHHHHHHHHhccc-
Q 036263          162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN---------------VRVCNTLMDVYSRFGCIEFARQVFQRMHK-  225 (305)
Q Consensus       162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~-  225 (305)
                      ...+..+-..+.+.|++++|...|++..+.. +.+               ...|..+..+|.+.|++++|...+++..+ 
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  346 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL  346 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            5567788888999999999999999998864 223               58899999999999999999999999874 


Q ss_pred             --CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHH-HHHHH
Q 036263          226 --RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT-DEVSFTGALTACSHAGLIEDGLQ-YFDIM  289 (305)
Q Consensus       226 --~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~-~~~~m  289 (305)
                        .+...|..+..+|...|++++|...|++..+.  .| +...+..+..++.+.++.+++.. .++.|
T Consensus       347 ~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~  412 (457)
T 1kt0_A          347 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANM  412 (457)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              46788999999999999999999999999884  45 44677788888888888887763 44444

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.83  E-value=0.00012  Score=63.66  Aligned_cols=86  Identities=6%  Similarity=-0.164  Sum_probs=52.8

Q ss_pred             HHHhcCChhHHHHHHHHHHhC---CCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc----
Q 036263           54 RHCRSGCILEAALEFTRMRLY---GTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG----  126 (305)
Q Consensus        54 ~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----  126 (305)
                      .+...|++++|+.++++..+.   -+.|+....              ..+++.|..+|...|++++|+.++++...    
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~--------------a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~  383 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYV--------------LRLLSIASEVLSYLQAYEEASHYARRMVDGYMK  383 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHH--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHH--------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            356789999999999887653   133332221              23457777778888888888887766532    


Q ss_pred             ---------cccHHHHHHHHHcCCChHHHHHHHHHH
Q 036263          127 ---------CDFWTALLNGFVKRDYFEEALEYFRVM  153 (305)
Q Consensus       127 ---------~~~~~~li~~~~~~g~~~~a~~~~~~m  153 (305)
                               ..+++.|...|...|++++|..++++.
T Consensus       384 ~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~A  419 (490)
T 3n71_A          384 LYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKA  419 (490)
T ss_dssp             HSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                     223555555555555555555555443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.81  E-value=0.0056  Score=50.19  Aligned_cols=224  Identities=11%  Similarity=0.044  Sum_probs=144.5

Q ss_pred             chHhHHHHHHHH---HhcCChh-HHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCC------
Q 036263           44 TTVQWTSSISRH---CRSGCIL-EAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGR------  113 (305)
Q Consensus        44 ~~~~~~~li~~~---~~~~~~~-~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~------  113 (305)
                      -+..|..+...+   .+.|.++ +|+.+++.+..  +.|+..|.                 |+.--..+...+.      
T Consensus        25 ki~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~--~nP~~yta-----------------Wn~Rr~iL~~l~~~~~~~~   85 (331)
T 3dss_A           25 KLKLYQSATQAVFQKRQAGELDESVLELTSQILG--ANPDFATL-----------------WNCRREVLQHLETEKSPEE   85 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHT--TCTTCHHH-----------------HHHHHHHHHHHHHHSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--HCchhHHH-----------------HHHHHHHHHHhcccccchh
Confidence            345566655543   3566665 78999999986  45554332                 2222112222221      


Q ss_pred             ----hHHHHHHHHhcCc-----cccHHHHHHHHHcCC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCC-hhHH
Q 036263          114 ----MDLATVVFDVMRG-----CDFWTALLNGFVKRD--YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRT-LGIG  181 (305)
Q Consensus       114 ----~~~a~~~~~~~~~-----~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a  181 (305)
                          +++++..++.+..     ..+|+.-...+.+.|  .+++++.+++.+.+.. +-+...|+.-...+...|. ++++
T Consensus        86 ~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~ee  164 (331)
T 3dss_A           86 SAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEE  164 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHH
Confidence                5677777776633     445666666666777  4899999999998863 2266677766666666777 5899


Q ss_pred             HHHHHHHhhcCCCCChhHHHHHHHHHHhc--------------CChHHHHHHHHhccc--C-chhhHHHHHHHHHhc---
Q 036263          182 LWMHRYVPKQDFKDNVRVCNTLMDVYSRF--------------GCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVN---  241 (305)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------------g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~---  241 (305)
                      .+.++.+.+.. +-|...|+.....+.+.              +.++++.+.+++...  | |...|+-+-..+.+.   
T Consensus       165 l~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~  243 (331)
T 3dss_A          165 LAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGR  243 (331)
T ss_dssp             HHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCG
T ss_pred             HHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCc
Confidence            99999999887 56777777766665554              447788888887763  4 666776554444444   


Q ss_pred             --------CChHHHHHHHHHHHHCCCCCCH-HHHHHHH---HHHhccCcHHHHHHHHHHHH
Q 036263          242 --------GFVGEALEYFNLMQKGVFKTDE-VSFTGAL---TACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       242 --------g~~~~a~~~~~~m~~~g~~p~~-~~~~~li---~~~~~~g~~~~a~~~~~~m~  290 (305)
                              +.++++++.++++.+.  .||. .++..++   .+....|..+++...+..+.
T Consensus       244 ~~~~~~~~~~l~~el~~~~elle~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~  302 (331)
T 3dss_A          244 CELSVEKSTVLQSELESCKELQEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK  302 (331)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHHHhh--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence                    4578899999999884  4654 2222222   22334677888888888887

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.80  E-value=0.00028  Score=59.25  Aligned_cols=120  Identities=8%  Similarity=-0.017  Sum_probs=91.0

Q ss_pred             cHHHHHHHHHcCCChHHHHHHHHHHHHc--------------CCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCC
Q 036263          129 FWTALLNGFVKRDYFEEALEYFRVMQIS--------------GVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDF  193 (305)
Q Consensus       129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~--------------g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  193 (305)
                      .+..+...+.+.|++++|...|++..+.              ...| +...|..+..++.+.|++++|...+++..+.. 
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-  303 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-  303 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence            3566667777777777777777766541              0233 45678888888999999999999999998865 


Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHH
Q 036263          194 KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALE  249 (305)
Q Consensus       194 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~  249 (305)
                      +.+...|..+..+|...|++++|...|++..+  | +...+..+...+...++.+++.+
T Consensus       304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            55688889999999999999999999998874  3 55677777777777777776654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.77  E-value=0.0002  Score=59.36  Aligned_cols=113  Identities=9%  Similarity=-0.065  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhc
Q 036263          162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVN  241 (305)
Q Consensus       162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~  241 (305)
                      ...+..+-..+.+.|++++|...|++..+..  |+...       +...|+.+++...+.      ...|..+..+|.+.
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~------~~~~~nla~~~~~~  243 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK------NPCHLNIAACLIKL  243 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH------THHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH------HHHHHHHHHHHHHc
Confidence            3456677778889999999999998887653  33221       223344444443322      24788899999999


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          242 GFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       242 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      |++++|...+++..+.. +-+...|..+..++...|++++|...|+...
T Consensus       244 g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al  291 (338)
T 2if4_A          244 KRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQ  291 (338)
T ss_dssp             TCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999998853 2367889999999999999999999999876

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.76  E-value=0.00046  Score=50.24  Aligned_cols=95  Identities=11%  Similarity=0.027  Sum_probs=71.4

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHc-------CC---------CC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcC
Q 036263          130 WTALLNGFVKRDYFEEALEYFRVMQIS-------GV---------EP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQD  192 (305)
Q Consensus       130 ~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~---------~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~  192 (305)
                      +......+.+.|++++|...|.+....       .-         .| +...|..+..++.+.|++++|...++...+.+
T Consensus        14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~   93 (162)
T 3rkv_A           14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE   93 (162)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence            444555566666666666666655432       00         12 34577888888999999999999999998876


Q ss_pred             CCCChhHHHHHHHHHHhcCChHHHHHHHHhccc
Q 036263          193 FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK  225 (305)
Q Consensus       193 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  225 (305)
                       +.+...|..+..+|...|++++|...|++..+
T Consensus        94 -p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  125 (162)
T 3rkv_A           94 -ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR  125 (162)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence             66788899999999999999999999998874

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.75  E-value=0.00042  Score=50.16  Aligned_cols=91  Identities=14%  Similarity=0.000  Sum_probs=64.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhccc--Cc-------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHC-----CC
Q 036263          200 CNTLMDVYSRFGCIEFARQVFQRMHK--RT-------------LVSWNSIIVGFAVNGFVGEALEYFNLMQKG-----VF  259 (305)
Q Consensus       200 ~~~li~~~~~~g~~~~a~~~~~~~~~--~~-------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~  259 (305)
                      +......+.+.|++++|...|++..+  |+             ...|+.+..++...|++++|+..+++..+.     .+
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~   93 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   93 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence            34444555556666666666665542  22             227888888888888888888888887773     12


Q ss_pred             CCCH-HHH----HHHHHHHhccCcHHHHHHHHHHHH
Q 036263          260 KTDE-VSF----TGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       260 ~p~~-~~~----~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      .|+. ..|    ...-.++...|++++|+..|+...
T Consensus        94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl  129 (159)
T 2hr2_A           94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  129 (159)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence            6754 566    777888999999999999999876

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.70  E-value=0.00059  Score=48.40  Aligned_cols=109  Identities=11%  Similarity=-0.069  Sum_probs=68.6

Q ss_pred             ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHh----cCChHHHH
Q 036263          142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR----FGCIEFAR  217 (305)
Q Consensus       142 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~  217 (305)
                      ++++|++.|++..+.| .|+..    +-..|...+.+++|.+.|++..+.|   +...+..+...|..    .++.++|.
T Consensus        10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A           10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            4667777777766665 33333    5555556666666777777766654   45556666666665    56677777


Q ss_pred             HHHHhccc-CchhhHHHHHHHHHh----cCChHHHHHHHHHHHHCC
Q 036263          218 QVFQRMHK-RTLVSWNSIIVGFAV----NGFVGEALEYFNLMQKGV  258 (305)
Q Consensus       218 ~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g  258 (305)
                      +.|++..+ .+...+..|-..|..    .+++++|.++|++..+.|
T Consensus        82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            77766653 355566666666666    666777777776666655

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.69  E-value=0.0025  Score=45.06  Aligned_cols=113  Identities=7%  Similarity=-0.177  Sum_probs=91.1

Q ss_pred             CcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc-CchhhHHHHHHHHHh----cCChHHHH
Q 036263          174 NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK-RTLVSWNSIIVGFAV----NGFVGEAL  248 (305)
Q Consensus       174 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~  248 (305)
                      -.++.++|...|++..+.| .+...    +...|...+..++|.+.|++..+ .+...+..+-..|..    .+++++|.
T Consensus         7 ~~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            7 VKKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            3456788999999998888 44443    77777777888999999998875 577888888888888    88999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHHhCC
Q 036263          249 EYFNLMQKGVFKTDEVSFTGALTACSH----AGLIEDGLQYFDIMKKIYRV  295 (305)
Q Consensus       249 ~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~  295 (305)
                      ++|++..+.|   +...+..|-..|..    .+++++|.++|+... ..|.
T Consensus        82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~~g~  128 (138)
T 1klx_A           82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC-RLGS  128 (138)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTC
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH-HCCC
Confidence            9999998876   56667777777777    789999999999887 5554

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.68  E-value=0.00038  Score=50.42  Aligned_cols=59  Identities=10%  Similarity=-0.023  Sum_probs=33.7

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-------------HHHHHHHHHHhcCcCChhHHHHHHHHHhh
Q 036263          130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPD-------------YLTIISVLNVCANVRTLGIGLWMHRYVPK  190 (305)
Q Consensus       130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~  190 (305)
                      +......+.+.|++++|+..|++..+.  .|+             ...|..+-.++.+.|++++|...++..++
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~   85 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH   85 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            445556677777888888888776553  232             12444555555555555555555555444

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.61  E-value=0.0027  Score=58.74  Aligned_cols=47  Identities=26%  Similarity=0.279  Sum_probs=28.3

Q ss_pred             HHhcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHH
Q 036263          108 YAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQ  154 (305)
Q Consensus       108 ~~~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  154 (305)
                      ....|+++.|.++.+.+.+...|..+...+.+.|+++.|.+.|..+.
T Consensus       662 ~l~~~~~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~  708 (814)
T 3mkq_A          662 ALKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAH  708 (814)
T ss_dssp             HHHHTCHHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             hhhcCCHHHHHHHHHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence            34456666666666665555566666666666666666666665543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.61  E-value=0.00052  Score=46.71  Aligned_cols=76  Identities=14%  Similarity=0.014  Sum_probs=49.1

Q ss_pred             HHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263          180 IGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQK  256 (305)
Q Consensus       180 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  256 (305)
                      .+...++...+.. +.+...+..+...|...|++++|...|++..+   .+...|..+..+|...|++++|...|++..+
T Consensus         3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3455555555543 44566666777777777777777777776653   2445666677777777777777777776655

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.60  E-value=8.1e-05  Score=50.17  Aligned_cols=60  Identities=8%  Similarity=0.064  Sum_probs=38.0

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263          197 VRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQK  256 (305)
Q Consensus       197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  256 (305)
                      ...+..+...+...|++++|.+.|++..+   .+...|..+..++...|++++|.+.+++..+
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   66 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR   66 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            44555566666666666666666666552   2455666666666677777777777766665

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.57  E-value=7.2e-05  Score=50.45  Aligned_cols=62  Identities=10%  Similarity=-0.110  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263          162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH  224 (305)
Q Consensus       162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  224 (305)
                      ...+..+...+...|++++|...+++..+.. +.+...+..+..+|.+.|++++|.+.+++..
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   65 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL   65 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3344455555555566666666655555543 3345555555666666666666666665554

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.53  E-value=0.0034  Score=54.82  Aligned_cols=200  Identities=16%  Similarity=0.020  Sum_probs=121.4

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDV  123 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~  123 (305)
                      +...|-..+..+.+.|++++|..+|++....   |+..........+.+..    ..+..+...+.. ...+.+......
T Consensus       212 ~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~~----~~~~~l~~~~~~-~~~~~~~~~~~~  283 (493)
T 2uy1_A          212 AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDEE----AVYGDLKRKYSM-GEAESAEKVFSK  283 (493)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTCT----HHHHHHHHHTC-----------CHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcchh----HHHHHHHHHHHh-hccchhhhhccc
Confidence            4667777788888999999999999999986   55433221111110100    011111111100 000000000000


Q ss_pred             cCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC-cCChhHHHHHHHHHhhcCCCCChhHHHH
Q 036263          124 MRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN-VRTLGIGLWMHRYVPKQDFKDNVRVCNT  202 (305)
Q Consensus       124 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~  202 (305)
                       .....|-..+....+.+..+.|..+|... .. ...+...|......-.. .++.+.|..+|+...+.- +-+...+..
T Consensus       284 -~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~  359 (493)
T 2uy1_A          284 -ELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEE  359 (493)
T ss_dssp             -HHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             -ccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHH
Confidence             00234666677776778899999999887 22 11234444322221122 236899999999988763 334556666


Q ss_pred             HHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263          203 LMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK  256 (305)
Q Consensus       203 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  256 (305)
                      .++...+.|+.+.|..+|+++. .....|...+.--...|+.+.+.++++++.+
T Consensus       360 yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          360 FFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            7887888899999999999985 3567788888777788999999998888764

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.42  E-value=0.053  Score=47.25  Aligned_cols=48  Identities=6%  Similarity=-0.168  Sum_probs=27.9

Q ss_pred             CchHhHHHHHHHHHhcCC-hhHHHHHHHHHHhC-CCCC-CHhhHHHHHHhh
Q 036263           43 DTTVQWTSSISRHCRSGC-ILEAALEFTRMRLY-GTNP-SHITFVTLLSGC   90 (305)
Q Consensus        43 ~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~-g~~p-~~~~~~~ll~~~   90 (305)
                      |++..|...+....+.+. .+....+|+..... |..| +...|...+.-+
T Consensus        45 ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~   95 (493)
T 2uy1_A           45 YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEE   95 (493)
T ss_dssp             CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHH
Confidence            577778777777776653 35566677776654 4333 455555555443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.42  E-value=0.0013  Score=44.60  Aligned_cols=79  Identities=16%  Similarity=0.040  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263          145 EALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH  224 (305)
Q Consensus       145 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  224 (305)
                      .|...|++..+.. +.+...+..+...+...|++++|...++...+.. +.+...|..+..+|...|++++|...|++..
T Consensus         3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4667777766532 2357788888888999999999999999988875 5567788899999999999999999988876


Q ss_pred             c
Q 036263          225 K  225 (305)
Q Consensus       225 ~  225 (305)
                      +
T Consensus        81 ~   81 (115)
T 2kat_A           81 A   81 (115)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.38  E-value=0.00032  Score=50.71  Aligned_cols=95  Identities=9%  Similarity=-0.068  Sum_probs=59.5

Q ss_pred             CChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh----------HHHHHHHHhccc--C-chhhHHHHHHHHHhc-
Q 036263          176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI----------EFARQVFQRMHK--R-TLVSWNSIIVGFAVN-  241 (305)
Q Consensus       176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~a~~~~~~~~~--~-~~~~~~~li~~~~~~-  241 (305)
                      +.+++|.+.++...+.. +.+...|..+..++...+++          ++|...|++..+  | +...|..+..+|... 
T Consensus        16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg   94 (158)
T 1zu2_A           16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA   94 (158)
T ss_dssp             HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence            44555566666655554 44555565555555555443          466666666653  3 445666777777665 


Q ss_pred             ----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036263          242 ----------GFVGEALEYFNLMQKGVFKTDEVSFTGALTAC  273 (305)
Q Consensus       242 ----------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~  273 (305)
                                |++++|.+.|++..+  +.|+...|...+...
T Consensus        95 ~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~  134 (158)
T 1zu2_A           95 FLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT  134 (158)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred             ccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence                      478888888888888  567776665555543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.29  E-value=0.0039  Score=57.71  Aligned_cols=100  Identities=19%  Similarity=0.161  Sum_probs=72.0

Q ss_pred             HHhcCChHHHHH-HHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHH
Q 036263          108 YAKFGRMDLATV-VFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHR  186 (305)
Q Consensus       108 ~~~~g~~~~a~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~  186 (305)
                      ....+++++|.+ ++..+++......++..+.+.|.++.|+++.+.       |.. -    .......|++++|.++.+
T Consensus       609 ~~~~~~~~~a~~~~l~~i~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~~-~----f~~~l~~~~~~~A~~~~~  676 (814)
T 3mkq_A          609 LTLRGEIEEAIENVLPNVEGKDSLTKIARFLEGQEYYEEALNISPD-------QDQ-K----FELALKVGQLTLARDLLT  676 (814)
T ss_dssp             HHHTTCHHHHHHHTGGGCCCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HHH-H----HHHHHHHTCHHHHHHHHT
T ss_pred             HHHhCCHHHHHHHHHhcCCchHHHHHHHHHHHhCCChHHheecCCC-------cch-h----eehhhhcCCHHHHHHHHH
Confidence            345689999988 765555122347788888889999988876632       111 1    233456788888888754


Q ss_pred             HHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc
Q 036263          187 YVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK  225 (305)
Q Consensus       187 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  225 (305)
                      .+      .+...|..+...+.+.|+++.|++.|.++.+
T Consensus       677 ~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d  709 (814)
T 3mkq_A          677 DE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD  709 (814)
T ss_dssp             TC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred             hh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence            43      4577899999999999999999999998874

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.28  E-value=0.0039  Score=39.85  Aligned_cols=57  Identities=14%  Similarity=0.104  Sum_probs=24.3

Q ss_pred             HHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 036263          166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM  223 (305)
Q Consensus       166 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  223 (305)
                      ..+...+...|++++|...+++..+.. +.+...+..+..+|.+.|++++|...+++.
T Consensus        13 ~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a   69 (91)
T 1na3_A           13 YNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKA   69 (91)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            333334444444444444444444332 223334444444444444444444444443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.26  E-value=0.0022  Score=42.38  Aligned_cols=61  Identities=15%  Similarity=0.106  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 036263          162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM  223 (305)
Q Consensus       162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  223 (305)
                      ...+..+...+...|++++|...|+...+.. +.+...|..+..+|...|++++|.+.|++.
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   67 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG   67 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3344444444555555555555555554443 233444555555555555555555554443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.23  E-value=0.0034  Score=40.10  Aligned_cols=78  Identities=15%  Similarity=0.173  Sum_probs=50.9

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036263          197 VRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTAC  273 (305)
Q Consensus       197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~  273 (305)
                      ...+..+...+...|++++|...|++..+   .+...+..+...+...|++++|...+++..+.. +-+...+..+..++
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~   87 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            45566677777777777777777777653   245667777777777777777777777776642 12445555555554


Q ss_pred             hc
Q 036263          274 SH  275 (305)
Q Consensus       274 ~~  275 (305)
                      .+
T Consensus        88 ~~   89 (91)
T 1na3_A           88 QK   89 (91)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.21  E-value=0.0044  Score=51.27  Aligned_cols=71  Identities=10%  Similarity=0.024  Sum_probs=43.0

Q ss_pred             chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCcccc
Q 036263          227 TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQIEHH  302 (305)
Q Consensus       227 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y  302 (305)
                      +..+|..+...+...|++++|...+++....+  |+...|..+-..+.-.|++++|.+.+++..   .+.|...+|
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al---rL~P~~~t~  346 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF---NLRPGANTL  346 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHSCSHHHH
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCcChH
Confidence            45556655555555667777777777666643  565555555566666677777776666555   344544443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.20  E-value=0.0021  Score=42.56  Aligned_cols=63  Identities=6%  Similarity=0.008  Sum_probs=53.6

Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263          194 KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQK  256 (305)
Q Consensus       194 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  256 (305)
                      +-+...+..+..+|.+.|++++|...|++..+  | +...|..+..+|...|++++|.+.|++..+
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            34577888899999999999999999998874  3 567888999999999999999999998765

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.12  E-value=0.051  Score=44.51  Aligned_cols=183  Identities=10%  Similarity=0.074  Sum_probs=122.6

Q ss_pred             HHhcCChH-HHHHHHHhcCc-----cccHHHHHHHHHcCCC----------hHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 036263          108 YAKFGRMD-LATVVFDVMRG-----CDFWTALLNGFVKRDY----------FEEALEYFRVMQISGVEP-DYLTIISVLN  170 (305)
Q Consensus       108 ~~~~g~~~-~a~~~~~~~~~-----~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~p-~~~t~~~ll~  170 (305)
                      ..+.|.++ +|+.+++.+..     ..+|+.=-..+...|.          +++++.+++.+...  .| +..+|+.--.
T Consensus        39 ~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--~PKny~aW~hR~w  116 (331)
T 3dss_A           39 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCW  116 (331)
T ss_dssp             HHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            34556654 78888888754     2224332222222222          67888999888775  34 5666766555


Q ss_pred             HhcCcC--ChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC-hHHHHHHHHhccc---CchhhHHHHHHHHHhc---
Q 036263          171 VCANVR--TLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC-IEFARQVFQRMHK---RTLVSWNSIIVGFAVN---  241 (305)
Q Consensus       171 ~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~---~~~~~~~~li~~~~~~---  241 (305)
                      .+...+  .++++..+++.+.+.. +-|-..|+.-.-++...|. ++++.+.++++.+   .|...|+.....+...   
T Consensus       117 lL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~  195 (331)
T 3dss_A          117 LLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ  195 (331)
T ss_dssp             HHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCC
T ss_pred             HHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhc
Confidence            555556  4889999999999987 6778888887777788888 5899999988874   3667777766665544   


Q ss_pred             -----------CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc-----------CcHHHHHHHHHHHHHHhCCCCC
Q 036263          242 -----------GFVGEALEYFNLMQKGVFKT-DEVSFTGALTACSHA-----------GLIEDGLQYFDIMKKIYRVSPQ  298 (305)
Q Consensus       242 -----------g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~~~~~p~  298 (305)
                                 +.++++++.+++....  .| |...|+-+-..+.+.           +.++++++.++++.   .+.||
T Consensus       196 ~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ell---e~~pd  270 (331)
T 3dss_A          196 PDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQ---ELEPE  270 (331)
T ss_dssp             C------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHH---HHCTT
T ss_pred             cccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHH---hhCcc
Confidence                       4578899999998874  35 445554333333333           45788888888887   44454

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.12  E-value=0.084  Score=43.52  Aligned_cols=193  Identities=11%  Similarity=-0.012  Sum_probs=131.0

Q ss_pred             chHhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhc-C-ChHHHHHH
Q 036263           44 TTVQWTSSISRHCRSG-CILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKF-G-RMDLATVV  120 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~-g-~~~~a~~~  120 (305)
                      +...||.--..+...| .+++++++++.+...  .|.                 +..+|+.-..++.+. + +.++++..
T Consensus        87 ~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--nPK-----------------ny~aW~hR~wlL~~l~~~~~~~EL~~  147 (349)
T 3q7a_A           87 HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--NLK-----------------SYQVWHHRLLLLDRISPQDPVSEIEY  147 (349)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--TCC-----------------CHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CCC-----------------cHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            4556777777777777 599999999999874  343                 222344444445555 6 78899999


Q ss_pred             HHhcCc-----cccHHHHHHHHHcCCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCC-------hhH
Q 036263          121 FDVMRG-----CDFWTALLNGFVKRDYFE--------EALEYFRVMQISGVEPDYLTIISVLNVCANVRT-------LGI  180 (305)
Q Consensus       121 ~~~~~~-----~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-------~~~  180 (305)
                      ++.+.+     ...|+--...+.+.|.++        ++++.++++.+.. .-|...|+.....+.+.++       +++
T Consensus       148 ~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~e  226 (349)
T 3q7a_A          148 IHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQD  226 (349)
T ss_dssp             HHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHH
Confidence            999866     223443333333444444        8999999988864 2367777777777777665       678


Q ss_pred             HHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh--------------------HHHHHHHHhccc---------CchhhH
Q 036263          181 GLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI--------------------EFARQVFQRMHK---------RTLVSW  231 (305)
Q Consensus       181 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~~~~---------~~~~~~  231 (305)
                      +.+.++..++.. +-|...|+-+-..+.+.|+.                    .+...+..++..         +.....
T Consensus       227 ELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al  305 (349)
T 3q7a_A          227 ELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL  305 (349)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence            888888888876 66788888877777776654                    233333333332         355677


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263          232 NSIIVGFAVNGFVGEALEYFNLMQKG  257 (305)
Q Consensus       232 ~~li~~~~~~g~~~~a~~~~~~m~~~  257 (305)
                      .-+...|...|+.++|.++++.+.+.
T Consensus       306 ~~l~d~~~~~~~~~~a~~~~~~l~~~  331 (349)
T 3q7a_A          306 EYLADSFIEQNRVDDAAKVFEKLSSE  331 (349)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence            88899999999999999999998754

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.10  E-value=0.0033  Score=53.75  Aligned_cols=90  Identities=10%  Similarity=-0.044  Sum_probs=60.1

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCC---CCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc
Q 036263           50 SSISRHCRSGCILEAALEFTRMRLYG---TNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG  126 (305)
Q Consensus        50 ~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  126 (305)
                      ..+..+.+.|++++|+.++++..+..   +.|+....              ..+++.|..+|...|++++|+.++++...
T Consensus       292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~--------------~~~~~~L~~~y~~~g~~~eA~~~~~~~L~  357 (429)
T 3qwp_A          292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQ--------------LKVLDCAMDACINLGLLEEALFYGTRTME  357 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHH--------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHH--------------HHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            34566778899999999999988642   33333221              23457778888888899888888776633


Q ss_pred             -------------cccHHHHHHHHHcCCChHHHHHHHHHH
Q 036263          127 -------------CDFWTALLNGFVKRDYFEEALEYFRVM  153 (305)
Q Consensus       127 -------------~~~~~~li~~~~~~g~~~~a~~~~~~m  153 (305)
                                   ..+++.|...|...|++++|+.++++.
T Consensus       358 i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A  397 (429)
T 3qwp_A          358 PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA  397 (429)
T ss_dssp             HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence                         333666666666666666666666554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.07  E-value=0.0028  Score=54.20  Aligned_cols=82  Identities=6%  Similarity=-0.082  Sum_probs=51.0

Q ss_pred             cCChhHHHHHHHHHHhC---CCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc--------
Q 036263           58 SGCILEAALEFTRMRLY---GTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG--------  126 (305)
Q Consensus        58 ~~~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--------  126 (305)
                      .|++++|+.++++..+.   -+.|+....              ..+++.|..+|...|++++|+.++++...        
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~--------------a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~  376 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYM--------------LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV  376 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHH--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHH--------------HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC
Confidence            56788888888876653   233432221              23456777778888888888877766533        


Q ss_pred             -----cccHHHHHHHHHcCCChHHHHHHHHHH
Q 036263          127 -----CDFWTALLNGFVKRDYFEEALEYFRVM  153 (305)
Q Consensus       127 -----~~~~~~li~~~~~~g~~~~a~~~~~~m  153 (305)
                           ..+++.|...|...|++++|+.++++.
T Consensus       377 ~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A  408 (433)
T 3qww_A          377 YSLNVASMWLKLGRLYMGLENKAAGEKALKKA  408 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence                 233556666666666666666665544

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.04  E-value=0.003  Score=54.04  Aligned_cols=62  Identities=13%  Similarity=0.061  Sum_probs=27.5

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          229 VSWNSIIVGFAVNGFVGEALEYFNLMQKG-----V-FKTD-EVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       229 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      .+++.+..+|...|++++|..++++...-     | -.|+ ..+++.|...|...|++++|+.++++..
T Consensus       330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            34444555555555555555554443221     1 1111 1334444445555555555555544443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.03  E-value=0.0022  Score=54.80  Aligned_cols=83  Identities=12%  Similarity=-0.026  Sum_probs=55.2

Q ss_pred             CcCChhHHHHHHHHHhhc---CCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhccc----------C-chhhHHHHH
Q 036263          174 NVRTLGIGLWMHRYVPKQ---DFKD----NVRVCNTLMDVYSRFGCIEFARQVFQRMHK----------R-TLVSWNSII  235 (305)
Q Consensus       174 ~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----------~-~~~~~~~li  235 (305)
                      ..|++++|..++++..+.   -+.|    ...+++.+..+|...|++++|..++++..+          | ...+++.|.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            456777777777766442   1112    245677777888888888888777777652          2 235677777


Q ss_pred             HHHHhcCChHHHHHHHHHHHH
Q 036263          236 VGFAVNGFVGEALEYFNLMQK  256 (305)
Q Consensus       236 ~~~~~~g~~~~a~~~~~~m~~  256 (305)
                      ..|...|++++|..++++..+
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHH
Confidence            777888888888777776543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.03  E-value=0.052  Score=48.21  Aligned_cols=145  Identities=13%  Similarity=0.062  Sum_probs=96.9

Q ss_pred             ChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCcCC----------hhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc
Q 036263          142 YFEEALEYFRVMQISGVEPD-YLTIISVLNVCANVRT----------LGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF  210 (305)
Q Consensus       142 ~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  210 (305)
                      ..++|++.++++.+.  .|+ ...|+.--.++...++          ++++...++.+.+.. +-+..+|+.-.-++.+.
T Consensus        44 ~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l  120 (567)
T 1dce_A           44 LDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL  120 (567)
T ss_dssp             CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence            345778888877764  453 4455544444444444          778888888887765 55677777777777777


Q ss_pred             C--ChHHHHHHHHhccc---CchhhHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--------
Q 036263          211 G--CIEFARQVFQRMHK---RTLVSWNSIIVGFAVNG-FVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA--------  276 (305)
Q Consensus       211 g--~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------  276 (305)
                      |  +++++.+.++++.+   .|..+|+.-...+...| .++++++.++++.+..+ -|...|+.....+.+.        
T Consensus       121 ~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~~  199 (567)
T 1dce_A          121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGP  199 (567)
T ss_dssp             SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhcccccccc
Confidence            7  66888888888774   35677777777777777 78888888888877542 2555555555444432        


Q ss_pred             ------CcHHHHHHHHHHHH
Q 036263          277 ------GLIEDGLQYFDIMK  290 (305)
Q Consensus       277 ------g~~~~a~~~~~~m~  290 (305)
                            +.++++.+.++...
T Consensus       200 ~~~~~~~~~~eel~~~~~ai  219 (567)
T 1dce_A          200 QGRLPENVLLKELELVQNAF  219 (567)
T ss_dssp             CCSSCHHHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHH
Confidence                  55777777777666

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.96  E-value=0.063  Score=39.35  Aligned_cols=129  Identities=10%  Similarity=0.039  Sum_probs=84.8

Q ss_pred             HHHHhcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHH
Q 036263          106 DMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMH  185 (305)
Q Consensus       106 ~~~~~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~  185 (305)
                      ......|+++.|.++.+.+.+...|..|.....+.|+++-|...|.....         |..+.-.|.-.|+.+....+-
T Consensus        13 ~LAL~lg~l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla   83 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ   83 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence            34556788888888888887777888888888888888888888877653         344444455566666666655


Q ss_pred             HHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHH
Q 036263          186 RYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLM  254 (305)
Q Consensus       186 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  254 (305)
                      +.....|-      ++.....+...|+++++.++|.+......     -.......|-.+.|.++.+.+
T Consensus        84 ~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r~~e-----A~~~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           84 NIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGSLPL-----AYAVAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTCHHH-----HHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCChHH-----HHHHHHHcCcHHHHHHHHHHh
Confidence            55554441      45555666677888888888777664221     111122355566666666654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.89  E-value=0.089  Score=46.70  Aligned_cols=160  Identities=11%  Similarity=0.027  Sum_probs=117.8

Q ss_pred             hHHHHHHHHhcCc-----cccHHHHHHHHHcCCC----------hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcC-
Q 036263          114 MDLATVVFDVMRG-----CDFWTALLNGFVKRDY----------FEEALEYFRVMQISGVEP-DYLTIISVLNVCANVR-  176 (305)
Q Consensus       114 ~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~-  176 (305)
                      -++|.+.++.+..     ..+|+.--..+.+.|+          ++++++.++.+.+.  .| +..+|..--..+.+.+ 
T Consensus        45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~~  122 (567)
T 1dce_A           45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPE  122 (567)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSS
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccc
Confidence            4567777777743     3345554455555555          89999999998875  44 5677777777777788 


Q ss_pred             -ChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhcccC---chhhHHHHHHHHHhc----------
Q 036263          177 -TLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG-CIEFARQVFQRMHKR---TLVSWNSIIVGFAVN----------  241 (305)
Q Consensus       177 -~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~----------  241 (305)
                       +++++.+.++.+.+.+ +-+...|+.-..++.+.| .++++.+.++++.+.   |...|+.....+...          
T Consensus       123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~  201 (567)
T 1dce_A          123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG  201 (567)
T ss_dssp             CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred             ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence             6799999999999987 667888888888888888 899999999998853   667888777666653          


Q ss_pred             ----CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCc
Q 036263          242 ----GFVGEALEYFNLMQKGVFKT-DEVSFTGALTACSHAGL  278 (305)
Q Consensus       242 ----g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~  278 (305)
                          +.++++.+.+++....  .| |...|.-.-..+.+.++
T Consensus       202 ~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~  241 (567)
T 1dce_A          202 RLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEP  241 (567)
T ss_dssp             SSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCC
T ss_pred             cccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCC
Confidence                5578999999888874  35 44566655555555554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.83  E-value=0.1  Score=43.21  Aligned_cols=151  Identities=8%  Similarity=-0.003  Sum_probs=98.5

Q ss_pred             HHHHHHHHhcCc-cccHHHHHHHHHc--CC---ChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcC---c-----CChh
Q 036263          115 DLATVVFDVMRG-CDFWTALLNGFVK--RD---YFEEALEYFRVMQISGVEPD-YLTIISVLNVCAN---V-----RTLG  179 (305)
Q Consensus       115 ~~a~~~~~~~~~-~~~~~~li~~~~~--~g---~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~---~-----~~~~  179 (305)
                      .++.......+. ...|...+++...  .+   ...+|..+|++..+.  .|+ ...+..+..++..   .     ....
T Consensus       181 ~e~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~  258 (372)
T 3ly7_A          181 RMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLA  258 (372)
T ss_dssp             HHHHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHH
Confidence            344444455544 5668877766443  22   357899999998874  675 3344333333321   0     1111


Q ss_pred             HHHHHHHHHhh-cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc--cCchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263          180 IGLWMHRYVPK-QDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH--KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK  256 (305)
Q Consensus       180 ~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  256 (305)
                      .....++.... ...+.+..+|..+...+...|++++|...+++..  .|+...|..+...+.-.|++++|.+.+++...
T Consensus       259 ~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr  338 (372)
T 3ly7_A          259 ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFN  338 (372)
T ss_dssp             HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            11122222111 1226678888888887888899999999999987  47777777888889999999999999999888


Q ss_pred             CCCCCCHHHHHHH
Q 036263          257 GVFKTDEVSFTGA  269 (305)
Q Consensus       257 ~g~~p~~~~~~~l  269 (305)
                        +.|...||...
T Consensus       339 --L~P~~~t~~~~  349 (372)
T 3ly7_A          339 --LRPGANTLYWI  349 (372)
T ss_dssp             --HSCSHHHHHHH
T ss_pred             --cCCCcChHHHH
Confidence              46888777543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.76  E-value=0.0046  Score=44.62  Aligned_cols=95  Identities=14%  Similarity=0.089  Sum_probs=68.6

Q ss_pred             cCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCCh----------hHHHHHHHHHhhcCCCCChhHHHHHHHHH
Q 036263          139 KRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTL----------GIGLWMHRYVPKQDFKDNVRVCNTLMDVY  207 (305)
Q Consensus       139 ~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~li~~~  207 (305)
                      +.+.+++|.+.++...+.  .| +...|..+-.++...+++          ++|...|++.++.+ +.+...|..+..+|
T Consensus        14 r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay   90 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY   90 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence            344577777777776664  34 566777676677666654          58888999888876 55678888999999


Q ss_pred             HhcC-----------ChHHHHHHHHhcc--cCchhhHHHHHH
Q 036263          208 SRFG-----------CIEFARQVFQRMH--KRTLVSWNSIIV  236 (305)
Q Consensus       208 ~~~g-----------~~~~a~~~~~~~~--~~~~~~~~~li~  236 (305)
                      ...|           ++++|.+.|++..  +|+...|...+.
T Consensus        91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~  132 (158)
T 1zu2_A           91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE  132 (158)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            8764           8999999999887  466555544444

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.44  E-value=0.12  Score=37.80  Aligned_cols=128  Identities=11%  Similarity=0.063  Sum_probs=76.1

Q ss_pred             HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHH
Q 036263          136 GFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF  215 (305)
Q Consensus       136 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  215 (305)
                      .....|+++.|.++.+++      -+...|..|-......|+++.|++.|.....         +..+.-.|.-.|+.++
T Consensus        14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~   78 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK   78 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred             HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence            345567777777776554      3566777777777777777777777766543         3344445555666655


Q ss_pred             HHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 036263          216 ARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM  289 (305)
Q Consensus       216 a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  289 (305)
                      -.++-+.....+  -++.....+.-.|+++++.++|.+...   .|....+   .+.   .|-.+.|.++.+.+
T Consensus        79 L~kla~iA~~~g--~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~~~---A~t---~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           79 LSKMQNIAQTRE--DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLAYAV---AKA---NGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHHHHHTT--CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHHHH---HHH---TTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCc--cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHHHH---HHH---cCcHHHHHHHHHHh
Confidence            554433332221  245566677788999999988865433   2322211   112   46677777777655

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=96.43  E-value=0.0057  Score=52.27  Aligned_cols=197  Identities=13%  Similarity=0.096  Sum_probs=142.7

Q ss_pred             CchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC----------CChhHHHHHHHHHHhcC
Q 036263           43 DTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS----------NNVMVSTALLDMYAKFG  112 (305)
Q Consensus        43 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------~~~~~~~~ll~~~~~~g  112 (305)
                      .|+..|..+|.+..+.|.+++-+..+.-.++..-.|  ..=+.++-++++.++          |+..-...+.+-|...|
T Consensus        81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~  158 (624)
T 3lvg_A           81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEK  158 (624)
T ss_dssp             SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSC
T ss_pred             CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHhhCcHHHHHHHHcCCCcccHHHHHHHHHHcc
Confidence            488889999999999999999999877666653344  445678888888887          77777788888888888


Q ss_pred             ChHHHHHHHHhcCc--------------------------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 036263          113 RMDLATVVFDVMRG--------------------------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTII  166 (305)
Q Consensus       113 ~~~~a~~~~~~~~~--------------------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~  166 (305)
                      .++.|.-+|..+.+                          +.+|-.+-.+|...+.+..|.-.--.+.   +.||  -..
T Consensus       159 lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~  233 (624)
T 3lvg_A          159 MYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELE  233 (624)
T ss_dssp             CSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCS
T ss_pred             CHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHH
Confidence            88888888877654                          5568888888888887776643332222   2222  234


Q ss_pred             HHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc----C-------chhhHHHHH
Q 036263          167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK----R-------TLVSWNSII  235 (305)
Q Consensus       167 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~-------~~~~~~~li  235 (305)
                      .++..|-+.|.+++...+++...... ....-+|+-|.-.|++- ++++..+.++..-.    |       ....|.-++
T Consensus       234 elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~Elv  311 (624)
T 3lvg_A          234 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV  311 (624)
T ss_dssp             GGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHH
Confidence            46667888888888888888776443 56678888888888875 45665555544332    2       456788899


Q ss_pred             HHHHhcCChHHHH
Q 036263          236 VGFAVNGFVGEAL  248 (305)
Q Consensus       236 ~~~~~~g~~~~a~  248 (305)
                      -.|+.-.+++.|.
T Consensus       312 fLY~~ydE~DnA~  324 (624)
T 3lvg_A          312 FLYDKYEEYDNAI  324 (624)
T ss_dssp             HHHHHHTCHHHHH
T ss_pred             HHHhcchhHHHHH
Confidence            9999888888775

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.23  E-value=0.018  Score=37.50  Aligned_cols=56  Identities=13%  Similarity=0.072  Sum_probs=30.4

Q ss_pred             HHHHcCCChHHHHHHHHHHHHcCCCC-CHH-HHHHHHHHhcCcCChhHHHHHHHHHhhcC
Q 036263          135 NGFVKRDYFEEALEYFRVMQISGVEP-DYL-TIISVLNVCANVRTLGIGLWMHRYVPKQD  192 (305)
Q Consensus       135 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~  192 (305)
                      ..+.+.|++++|...|++..+.  .| +.. .+..+..++...|++++|...|+...+..
T Consensus         8 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~   65 (99)
T 2kc7_A            8 KELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN   65 (99)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            3444555666666666655543  23 334 55555555556666666666666555543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.22  E-value=0.006  Score=39.83  Aligned_cols=54  Identities=15%  Similarity=0.049  Sum_probs=32.0

Q ss_pred             HHHHHhcCChHHHHHHHHhccc--C-chh-hHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263          204 MDVYSRFGCIEFARQVFQRMHK--R-TLV-SWNSIIVGFAVNGFVGEALEYFNLMQKG  257 (305)
Q Consensus       204 i~~~~~~g~~~~a~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~  257 (305)
                      ...+.+.|++++|...|++..+  | +.. .|..+..+|...|++++|.+.|++..+.
T Consensus         7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            3445556666666666666542  2 334 5566666666666666666666666553

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.84  E-value=0.052  Score=35.96  Aligned_cols=67  Identities=9%  Similarity=0.023  Sum_probs=53.0

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHhccc----------CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 036263          195 DNVRVCNTLMDVYSRFGCIEFARQVFQRMHK----------RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE  263 (305)
Q Consensus       195 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~  263 (305)
                      .++.-+..+...+.+.|+++.|...|+...+          .....+..+..+|.+.|+++.|...+++..+  +.|+.
T Consensus         3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~   79 (104)
T 2v5f_A            3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH   79 (104)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence            4566677888888999999999998887653          1346788888899999999999999999887  45654

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=95.74  E-value=0.3  Score=33.97  Aligned_cols=66  Identities=11%  Similarity=-0.084  Sum_probs=51.7

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCC
Q 036263          229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVS  296 (305)
Q Consensus       229 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~  296 (305)
                      .-+...+.....+|+-++-.+++.++.. +-+|++...-.+..+|.+.|+..++.+++.+.- +.|++
T Consensus        92 e~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC-~kG~k  157 (172)
T 1wy6_A           92 EHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEAC-KKGEK  157 (172)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCH
T ss_pred             HHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH-HhhhH
Confidence            3455667788888998988888888544 356788888888999999999999999998887 66654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.63  E-value=0.11  Score=33.62  Aligned_cols=65  Identities=6%  Similarity=-0.036  Sum_probs=42.1

Q ss_pred             CCChhHHHHHHHHHHhcCC---hHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 036263          194 KDNVRVCNTLMDVYSRFGC---IEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV  258 (305)
Q Consensus       194 ~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  258 (305)
                      +.+...+..+..++...++   .++|..++++..+  | ++.....+...+...|++++|...|+++.+..
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~   73 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN   73 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            3455566666666654433   5777777777663  2 45666666677777777777777777777653

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=95.57  E-value=0.36  Score=33.61  Aligned_cols=81  Identities=10%  Similarity=-0.083  Sum_probs=44.3

Q ss_pred             CChHHHHHHHHhcCc-cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhh
Q 036263          112 GRMDLATVVFDVMRG-CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK  190 (305)
Q Consensus       112 g~~~~a~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~  190 (305)
                      |++......+-.+.. ....+.-+..+...|+-++-.+++..+.. +.+|+......+..||.+.|+..++.+++.+.-+
T Consensus        75 ~NlKrVi~C~~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~  153 (172)
T 1wy6_A           75 QNLKSVVECGVINNTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACK  153 (172)
T ss_dssp             SCTHHHHHHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hcHHHHHHHHHHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            444444444444432 33344445566666666666666665322 2355556666666666666666666666666666


Q ss_pred             cCC
Q 036263          191 QDF  193 (305)
Q Consensus       191 ~~~  193 (305)
                      .|+
T Consensus       154 kG~  156 (172)
T 1wy6_A          154 KGE  156 (172)
T ss_dssp             TTC
T ss_pred             hhh
Confidence            654

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.55  E-value=0.055  Score=38.63  Aligned_cols=62  Identities=11%  Similarity=-0.093  Sum_probs=29.0

Q ss_pred             CChhHHHHHHHHHHhcC---ChHHHHHHHHhcccCc-----hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263          195 DNVRVCNTLMDVYSRFG---CIEFARQVFQRMHKRT-----LVSWNSIIVGFAVNGFVGEALEYFNLMQK  256 (305)
Q Consensus       195 ~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~  256 (305)
                      ++..+...+..++++++   +.+++..++++..+.+     ...+-.+.-+|.+.|++++|.+.++.+.+
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~   99 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ   99 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            44444444444455544   3334555544443211     22233344444555555555555555555

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.45  E-value=0.099  Score=34.57  Aligned_cols=64  Identities=13%  Similarity=-0.054  Sum_probs=41.0

Q ss_pred             CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcC------CCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263          161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQD------FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH  224 (305)
Q Consensus       161 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  224 (305)
                      +..-.-.|-..+.+.++++.|...++...+.-      -.+...++..+..+|.+.|++++|...+++..
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al   73 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL   73 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            33444556666677777777777777665431      12345566777777777777777777777665

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.12  E-value=0.16  Score=32.86  Aligned_cols=64  Identities=3%  Similarity=-0.177  Sum_probs=45.6

Q ss_pred             CHHHHHHHHHHhcCcCC---hhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc
Q 036263          161 DYLTIISVLNVCANVRT---LGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK  225 (305)
Q Consensus       161 ~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  225 (305)
                      +...+..+..++...++   .++|..++++..+.+ +-+......+...+.+.|++++|...|+++.+
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~   71 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD   71 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            45555555555543332   678888888888776 56677777788888888888888888888774

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=94.97  E-value=0.13  Score=40.95  Aligned_cols=103  Identities=10%  Similarity=-0.051  Sum_probs=76.8

Q ss_pred             hhHHHHHHHHHhhcCCCCC---hhHHHHHHHHHHh-----cCChHHHHHHHHhccc--C--chhhHHHHHHHHHhc-CCh
Q 036263          178 LGIGLWMHRYVPKQDFKDN---VRVCNTLMDVYSR-----FGCIEFARQVFQRMHK--R--TLVSWNSIIVGFAVN-GFV  244 (305)
Q Consensus       178 ~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~--~--~~~~~~~li~~~~~~-g~~  244 (305)
                      ...|...+++..+.+  |+   ...|..+...|.+     .|+.++|.+.|++..+  |  +..++......++.. |+.
T Consensus       179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            356677777777764  44   6789999999999     4999999999999984  5  367777888888885 999


Q ss_pred             HHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          245 GEALEYFNLMQKGVFK--TDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       245 ~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      +++.+.+++.......  |+....+.+        .-++|..+++++.
T Consensus       257 ~~a~~~L~kAL~a~p~~~P~~~lan~~--------~q~eA~~LL~~~~  296 (301)
T 3u64_A          257 AGFDEALDRALAIDPESVPHNKLLVIL--------SQKRARWLKAHVQ  296 (301)
T ss_dssp             HHHHHHHHHHHHCCGGGCSSCHHHHHH--------HHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHcCCCCCCCChhHHHHH--------HHHHHHHHHHHhH
Confidence            9999999999997765  664444443        3345555555544

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.68  E-value=0.17  Score=42.51  Aligned_cols=54  Identities=9%  Similarity=0.134  Sum_probs=26.4

Q ss_pred             HHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHH
Q 036263          201 NTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLM  254 (305)
Q Consensus       201 ~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m  254 (305)
                      ..++..+...|+.++|...++.+..  | +...|..++.++.+.|+..+|.+.|++.
T Consensus       175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~  231 (388)
T 2ff4_A          175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  231 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3344444455555555544444432  2 3344555555555555555555555543

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=94.43  E-value=1.6  Score=35.23  Aligned_cols=139  Identities=11%  Similarity=0.061  Sum_probs=88.8

Q ss_pred             HHhcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHH----HHHHHHcCCCCCHHHHHHHHHHhcCcCChh-HHH
Q 036263          108 YAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEY----FRVMQISGVEPDYLTIISVLNVCANVRTLG-IGL  182 (305)
Q Consensus       108 ~~~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~  182 (305)
                      |.+.+++++|.+++..         -...+.+.|+...|-++    ++-..+.+++++......++..+.....-+ .-.
T Consensus        43 y~~~~~~~eAidlL~~---------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~  113 (312)
T 2wpv_A           43 YVRSKSYEHAIELISQ---------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLK  113 (312)
T ss_dssp             HHHTTCHHHHHHHHHH---------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHH
T ss_pred             HHHhcCHHHHHHHHHH---------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHH
Confidence            7788999999987654         33455667887766654    455566789999888888887765533221 123


Q ss_pred             HHHHHH----hhcC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhh-----------------------HHH
Q 036263          183 WMHRYV----PKQD--FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVS-----------------------WNS  233 (305)
Q Consensus       183 ~~~~~~----~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-----------------------~~~  233 (305)
                      ++.+.+    .+.|  -.-++.....+...|.+.|++.+|+..|-.-...+...                       ...
T Consensus       114 ~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~R  193 (312)
T 2wpv_A          114 DVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSR  193 (312)
T ss_dssp             HHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHH
Confidence            333333    3333  12467888999999999999999998774222111111                       112


Q ss_pred             HHHHHHhcCChHHHHHHHHHHH
Q 036263          234 IIVGFAVNGFVGEALEYFNLMQ  255 (305)
Q Consensus       234 li~~~~~~g~~~~a~~~~~~m~  255 (305)
                      .+--|...|+...|..+++...
T Consensus       194 aVL~yL~l~n~~~A~~~~~~f~  215 (312)
T 2wpv_A          194 LVFNYLFISNISFAHESKDIFL  215 (312)
T ss_dssp             HHHHHHHTTBHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHH
Confidence            2334556778888888887654

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=94.41  E-value=0.32  Score=34.68  Aligned_cols=81  Identities=10%  Similarity=-0.012  Sum_probs=60.6

Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcC---ChhHHHHHHHHHhhcCCCC--ChhHHHHHHHHHHhcCChHHHH
Q 036263          143 FEEALEYFRVMQISGVEPDYLTIISVLNVCANVR---TLGIGLWMHRYVPKQDFKD--NVRVCNTLMDVYSRFGCIEFAR  217 (305)
Q Consensus       143 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~  217 (305)
                      ...+.+.|.+..+.|. ++..+...+-.++++.+   +.+++..+++.+.+.+ .|  ....+-.+.-+|.+.|++++|.
T Consensus        14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence            4455666666555554 67777777777888877   6668999999998875 34  3555666777789999999999


Q ss_pred             HHHHhccc
Q 036263          218 QVFQRMHK  225 (305)
Q Consensus       218 ~~~~~~~~  225 (305)
                      +.++.+.+
T Consensus        92 ~y~~~lL~   99 (152)
T 1pc2_A           92 KYVRGLLQ   99 (152)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999874

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.59  E-value=0.97  Score=41.35  Aligned_cols=123  Identities=11%  Similarity=-0.003  Sum_probs=76.0

Q ss_pred             HHHHHHHhcCcCC-hhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC-hHHHHHHHHhccc-----------Cchhh-
Q 036263          165 IISVLNVCANVRT-LGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC-IEFARQVFQRMHK-----------RTLVS-  230 (305)
Q Consensus       165 ~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~-----------~~~~~-  230 (305)
                      ...++..+...++ .+.|..+++.+.+.+...+......++..+.+.++ --+|.+++.+..+           .+... 
T Consensus       251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~  330 (754)
T 4gns_B          251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA  330 (754)
T ss_dssp             HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred             HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence            3455555556666 47788899998887521222222333333333332 2234444443321           11110 


Q ss_pred             --H---HHH----HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 036263          231 --W---NSI----IVGFAVNGFVGEALEYFNLMQKGVFKT-DEVSFTGALTACSHAGLIEDGLQYFDIM  289 (305)
Q Consensus       231 --~---~~l----i~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m  289 (305)
                        .   ..|    .+-+...|+++-|+++-++....  .| +-.+|..|..+|.+.|+++.|+-.++.+
T Consensus       331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence              0   112    33366789999999999998874  45 4689999999999999999999998876

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.35  E-value=0.92  Score=38.03  Aligned_cols=58  Identities=7%  Similarity=-0.055  Sum_probs=34.2

Q ss_pred             HHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263          166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH  224 (305)
Q Consensus       166 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  224 (305)
                      ..++.++...|+.+++...+..+.... +.+...|..+|.+|.+.|+..+|.+.|++..
T Consensus       175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r  232 (388)
T 2ff4_A          175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVK  232 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            344555556666666666666555543 4555566666666666666666666666554

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=93.20  E-value=0.0012  Score=56.26  Aligned_cols=144  Identities=11%  Similarity=0.054  Sum_probs=112.0

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCc
Q 036263           96 NNVMVSTALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANV  175 (305)
Q Consensus        96 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~  175 (305)
                      ....+|+-|..++.+.+++.+|.+-|-+..+...|..+|.+..+.|++++-..++...++..-+|  ..=+.|+-+|++.
T Consensus        52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk~  129 (624)
T 3lvg_A           52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKT  129 (624)
T ss_dssp             CCCCCSSSHHHHTTTSSSCTTTTTSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHTS
T ss_pred             CCccHHHHHHHHHHccCchHHHHHHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHhh
Confidence            45567888889999999999999988888889999999999999999999999988766654344  4456889999999


Q ss_pred             CChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc------------------------CchhhH
Q 036263          176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK------------------------RTLVSW  231 (305)
Q Consensus       176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~------------------------~~~~~~  231 (305)
                      ++..+.++++       -.||..-...+.+-|...|.++.|.-+|..+..                        .++.||
T Consensus       130 ~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktW  202 (624)
T 3lvg_A          130 NRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTW  202 (624)
T ss_dssp             CSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSH
T ss_pred             CcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence            9987655543       246666667778888888888888888777651                        267789


Q ss_pred             HHHHHHHHhcCChHHHH
Q 036263          232 NSIIVGFAVNGFVGEAL  248 (305)
Q Consensus       232 ~~li~~~~~~g~~~~a~  248 (305)
                      -.+-.+|...+.+.-|.
T Consensus       203 KeV~~ACvd~~EfrLAq  219 (624)
T 3lvg_A          203 KEVCFACVDGKEFRLAQ  219 (624)
T ss_dssp             HHHTHHHHHSCTTTTTT
T ss_pred             HHHHHHHhCchHHHHHH
Confidence            88888888777655443

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=93.10  E-value=3  Score=33.95  Aligned_cols=140  Identities=11%  Similarity=0.057  Sum_probs=88.5

Q ss_pred             HHhcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHH----HHHHHcCCCCCHHHHHHHHHHhcCcCChh-HHH
Q 036263          108 YAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYF----RVMQISGVEPDYLTIISVLNVCANVRTLG-IGL  182 (305)
Q Consensus       108 ~~~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~  182 (305)
                      |.+.+++++|.+++-.         -...+.+.|+...|-++-    +-+.+.++++|......++..+.....-+ .-.
T Consensus        45 y~~~k~y~eAidLL~~---------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~  115 (336)
T 3lpz_A           45 YSKQGNWAAAVDILAS---------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRK  115 (336)
T ss_dssp             HHHTTCHHHHHHHHHH---------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHH
T ss_pred             HHhhcCHHHHHHHHHH---------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHH
Confidence            7888999999987644         334556667766655554    55667889999988888888776655422 112


Q ss_pred             HHHHHHh----hcC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHH--------------------HHHH
Q 036263          183 WMHRYVP----KQD--FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWN--------------------SIIV  236 (305)
Q Consensus       183 ~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--------------------~li~  236 (305)
                      .+.+.++    +.|  -.-|......+...|.+.+++.+|+..|-.-.++....|.                    ..+-
T Consensus       116 ~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL  195 (336)
T 3lpz_A          116 RFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVL  195 (336)
T ss_dssp             HHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence            3333332    333  2346777888899999999999998877322222222222                    2233


Q ss_pred             HHHhcCChHHHHHHHHHHHH
Q 036263          237 GFAVNGFVGEALEYFNLMQK  256 (305)
Q Consensus       237 ~~~~~g~~~~a~~~~~~m~~  256 (305)
                      -|...++...|..+++...+
T Consensus       196 ~yL~l~n~~~A~~~~~~f~~  215 (336)
T 3lpz_A          196 PYLLVANVRAANTAYRIFTS  215 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHH
Confidence            35566788888777666543

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=92.92  E-value=1.1  Score=41.11  Aligned_cols=51  Identities=20%  Similarity=0.121  Sum_probs=37.8

Q ss_pred             HHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHH
Q 036263          204 MDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLM  254 (305)
Q Consensus       204 i~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m  254 (305)
                      .+.+...|+++.|.++-++...  | +-.+|..|..+|...|+++.|+-.++.+
T Consensus       344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            3445667888888888777763  4 4578888888888888888888777765

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.84  E-value=2.7  Score=35.96  Aligned_cols=163  Identities=11%  Similarity=0.094  Sum_probs=96.3

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHH-cCCCCCHHH--HHHHHHHhcCcCChhH--HHHHHHHHh---hcCCCC---Chh
Q 036263          130 WTALLNGFVKRDYFEEALEYFRVMQI-SGVEPDYLT--IISVLNVCANVRTLGI--GLWMHRYVP---KQDFKD---NVR  198 (305)
Q Consensus       130 ~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t--~~~ll~~~~~~~~~~~--a~~~~~~~~---~~~~~~---~~~  198 (305)
                      ...++..|...|+++...+.+..+.. +|..+...+  ...++.........+.  -..+.+.+.   +..+-.   ...
T Consensus        59 l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erar  138 (445)
T 4b4t_P           59 LAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERAR  138 (445)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            55667777777888777666665543 333222221  1222222222232222  112222111   111112   233


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhcccC---------chhhHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCH--
Q 036263          199 VCNTLMDVYSRFGCIEFARQVFQRMHKR---------TLVSWNSIIVGFAVNGFVGEALEYFNLMQK----GVFKTDE--  263 (305)
Q Consensus       199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~--  263 (305)
                      ....|...|...|++.+|..+++++...         -+..+..-++.|...+++..|..++++...    ....|+.  
T Consensus       139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~  218 (445)
T 4b4t_P          139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL  218 (445)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence            4567888899999999999999988621         135677778889999999999999888643    2222322  


Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHH
Q 036263          264 VSFTGALTACSHAGLIEDGLQYFDIMKKI  292 (305)
Q Consensus       264 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~  292 (305)
                      ..+...+..+...+++.+|-..|.+....
T Consensus       219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          219 EYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            34566667777788888888777776533

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=92.83  E-value=1.4  Score=35.23  Aligned_cols=87  Identities=11%  Similarity=-0.023  Sum_probs=58.8

Q ss_pred             HHHHHHHHhcCc-------cccHHHHHHHHHcC-----CChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhcCc-CChh
Q 036263          115 DLATVVFDVMRG-------CDFWTALLNGFVKR-----DYFEEALEYFRVMQISGVEP--DYLTIISVLNVCANV-RTLG  179 (305)
Q Consensus       115 ~~a~~~~~~~~~-------~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~-~~~~  179 (305)
                      ..|...+++..+       ...|..+...|.+.     |+.++|.+.|++..+.  .|  +..++......++.. |+.+
T Consensus       180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd~~  257 (301)
T 3u64_A          180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNNRA  257 (301)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred             HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCCHH
Confidence            445555555533       33577788888874     8888888888887774  45  356666677777774 8888


Q ss_pred             HHHHHHHHHhhcCCC--CChhHHHHH
Q 036263          180 IGLWMHRYVPKQDFK--DNVRVCNTL  203 (305)
Q Consensus       180 ~a~~~~~~~~~~~~~--~~~~~~~~l  203 (305)
                      ++.+.+++.......  |+....+.+
T Consensus       258 ~a~~~L~kAL~a~p~~~P~~~lan~~  283 (301)
T 3u64_A          258 GFDEALDRALAIDPESVPHNKLLVIL  283 (301)
T ss_dssp             HHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCChhHHHHH
Confidence            888888888877655  555544443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=90.97  E-value=0.81  Score=31.38  Aligned_cols=86  Identities=9%  Similarity=-0.130  Sum_probs=54.3

Q ss_pred             cCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHH---HHHHHHhcccCc-----hhhHHHHHHHHHhcCChHH
Q 036263          175 VRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF---ARQVFQRMHKRT-----LVSWNSIIVGFAVNGFVGE  246 (305)
Q Consensus       175 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~  246 (305)
                      ......+.+-+......| .++..+--.+..++.+......   +..+++++.+.+     ....-.+.-++.+.|++++
T Consensus        14 ~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~   92 (126)
T 1nzn_A           14 VEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK   92 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence            334445555555555555 3666666666777777776555   777777766432     1233445667788888888


Q ss_pred             HHHHHHHHHHCCCCCCH
Q 036263          247 ALEYFNLMQKGVFKTDE  263 (305)
Q Consensus       247 a~~~~~~m~~~g~~p~~  263 (305)
                      |.+.++.+.+  +.|+.
T Consensus        93 A~~~~~~lL~--~eP~n  107 (126)
T 1nzn_A           93 ALKYVRGLLQ--TEPQN  107 (126)
T ss_dssp             HHHHHHHHHH--HCTTC
T ss_pred             HHHHHHHHHH--hCCCC
Confidence            8888888877  45643

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=90.94  E-value=2.4  Score=29.04  Aligned_cols=82  Identities=11%  Similarity=-0.045  Sum_probs=58.7

Q ss_pred             ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhH---HHHHHHHHhhcCCCC--ChhHHHHHHHHHHhcCChHHH
Q 036263          142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGI---GLWMHRYVPKQDFKD--NVRVCNTLMDVYSRFGCIEFA  216 (305)
Q Consensus       142 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a  216 (305)
                      .+..+.+-|.+....|. |+..+--.+..++.+..+...   +..+++.+.+.+ .|  .....-.+.-++.+.|++++|
T Consensus        16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A   93 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence            34555556665555553 777777777778888877665   888888888765 23  334455567788999999999


Q ss_pred             HHHHHhccc
Q 036263          217 RQVFQRMHK  225 (305)
Q Consensus       217 ~~~~~~~~~  225 (305)
                      .+.++.+.+
T Consensus        94 ~~~~~~lL~  102 (126)
T 1nzn_A           94 LKYVRGLLQ  102 (126)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998873

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=90.56  E-value=3.4  Score=29.29  Aligned_cols=48  Identities=10%  Similarity=-0.014  Sum_probs=24.0

Q ss_pred             CChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263          176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH  224 (305)
Q Consensus       176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  224 (305)
                      ++.++|.++|+.+++.+ +--+.+|....+--.+.|++..|.+++.+..
T Consensus        74 ~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~Ai  121 (161)
T 4h7y_A           74 QEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAV  121 (161)
T ss_dssp             HCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence            45555555555554431 1114555555555555555555555555544

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=90.11  E-value=1.8  Score=28.31  Aligned_cols=43  Identities=14%  Similarity=0.203  Sum_probs=20.2

Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          248 LEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       248 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      .+-++.+....+.|++....+.+++|-+..++..|..+|+.++
T Consensus        30 rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK   72 (109)
T 1v54_E           30 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK   72 (109)
T ss_dssp             HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3333444444444444444444455544455555555444444

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=89.20  E-value=6.1  Score=38.28  Aligned_cols=143  Identities=8%  Similarity=0.001  Sum_probs=93.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhcCccc-cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-------------------
Q 036263          101 STALLDMYAKFGRMDLATVVFDVMRGCD-FWTALLNGFVKRDYFEEALEYFRVMQISGVEP-------------------  160 (305)
Q Consensus       101 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-------------------  160 (305)
                      ...++..+.+.+..+.+.++....+... .--.+..++...|++++|.+.|.+.- .|+..                   
T Consensus       815 ~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~~~~~~~~~~~~~~~  893 (1139)
T 4fhn_B          815 VTELVEKLFLFKQYNACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEKYH  893 (1139)
T ss_dssp             HHHHHHHHHHHSCTTHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhhhhhccccccccccc
Confidence            3456666777888888888777766522 22345577888999999999997642 12111                   


Q ss_pred             ----CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhcccC--chhh
Q 036263          161 ----DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDN----VRVCNTLMDVYSRFGCIEFARQVFQRMHKR--TLVS  230 (305)
Q Consensus       161 ----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~  230 (305)
                          -..=|..++..+.+.+..+.+.++-+...+..-+.+    ...|..+.+++...|++++|...+-.++..  -...
T Consensus       894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~c  973 (1139)
T 4fhn_B          894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSC  973 (1139)
T ss_dssp             SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHH
T ss_pred             ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHH
Confidence                012256677777778888888777766655432222    226788899999999999998888777643  2245


Q ss_pred             HHHHHHHHHhcCCh
Q 036263          231 WNSIIVGFAVNGFV  244 (305)
Q Consensus       231 ~~~li~~~~~~g~~  244 (305)
                      ...++...|..|..
T Consensus       974 Lr~LV~~lce~~~~  987 (1139)
T 4fhn_B          974 LLDFVNQLTKQGKI  987 (1139)
T ss_dssp             HHHHHHHHHHHCCH
T ss_pred             HHHHHHHHHhCCCh
Confidence            55666666655543

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=87.24  E-value=4.5  Score=26.40  Aligned_cols=47  Identities=6%  Similarity=-0.030  Sum_probs=34.5

Q ss_pred             hhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263          178 LGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH  224 (305)
Q Consensus       178 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  224 (305)
                      .-++.+-++.+...++.|++.+..+.+++|.+.+++.-|.++|+-++
T Consensus        26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK   72 (109)
T 1v54_E           26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK   72 (109)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            33556666666777777777777777788777777777777777776

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=85.46  E-value=4.2  Score=28.12  Aligned_cols=31  Identities=3%  Similarity=-0.022  Sum_probs=16.9

Q ss_pred             CchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263          226 RTLVSWNSIIVGFAVNGFVGEALEYFNLMQK  256 (305)
Q Consensus       226 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  256 (305)
                      |+.......+++|.+.+|+..|..+|+-.+.
T Consensus        86 PeP~Ii~AALrAcRRvNDfalAVR~lE~vK~  116 (152)
T 2y69_E           86 PEPKIIDAALRACRRLNDFASAVRILEVVKD  116 (152)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4445555555555555555555555555443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=85.04  E-value=8.3  Score=27.36  Aligned_cols=109  Identities=10%  Similarity=-0.105  Sum_probs=63.6

Q ss_pred             CHHHHHHHHHHhcCcCCh------hHHHHHHHHHhhcCCCCChhH-HHHHHH------HHHhcCChHHHHHHHHhccc--
Q 036263          161 DYLTIISVLNVCANVRTL------GIGLWMHRYVPKQDFKDNVRV-CNTLMD------VYSRFGCIEFARQVFQRMHK--  225 (305)
Q Consensus       161 ~~~t~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~-~~~li~------~~~~~g~~~~a~~~~~~~~~--  225 (305)
                      |..+|-..+...-+.|+.      ++..++|++.... ++|+... |..-+.      .+...++.++|.++|+.+.+  
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h   90 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC   90 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            566666666666666777      7777888877664 4554211 111111      11233677777888777752  


Q ss_pred             -CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036263          226 -RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALT  271 (305)
Q Consensus       226 -~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~  271 (305)
                       .-...|-....--.++|+.++|.+++.+....+.+| ...+...++
T Consensus        91 KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~  136 (161)
T 4h7y_A           91 KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR  136 (161)
T ss_dssp             TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence             223444444445567888888888888877766544 344444443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=84.32  E-value=31  Score=33.42  Aligned_cols=152  Identities=11%  Similarity=0.085  Sum_probs=99.2

Q ss_pred             HHHHHHHhcCChHHHHHHHHhcCc----------------------------cccHHHHHHHHHcCCChHHHHHHHHHHH
Q 036263          103 ALLDMYAKFGRMDLATVVFDVMRG----------------------------CDFWTALLNGFVKRDYFEEALEYFRVMQ  154 (305)
Q Consensus       103 ~ll~~~~~~g~~~~a~~~~~~~~~----------------------------~~~~~~li~~~~~~g~~~~a~~~~~~m~  154 (305)
                      .+..++...|++++|.+.|++.-.                            ..-|.-++..+.+.|.++.+.++-+...
T Consensus       847 l~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi  926 (1139)
T 4fhn_B          847 LKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLAD  926 (1139)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            345678889999999999988732                            0116778888888999988887776654


Q ss_pred             HcC-CCC-C--HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHH------------HHH
Q 036263          155 ISG-VEP-D--YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF------------ARQ  218 (305)
Q Consensus       155 ~~g-~~p-~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~------------a~~  218 (305)
                      +.. -.+ +  ...|..++.++...|++++|...+-.+.....  -......|+...|+.|..+.            ..+
T Consensus       927 ~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~ 1004 (1139)
T 4fhn_B          927 ASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDN 1004 (1139)
T ss_dssp             HHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHH
T ss_pred             HhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHH
Confidence            432 121 1  23578899999999999999999887765543  34566777777777665543            333


Q ss_pred             HHHhccc-----Cc-hhhHHHHHHHHHhcCChHHHHH-HHHHHHH
Q 036263          219 VFQRMHK-----RT-LVSWNSIIVGFAVNGFVGEALE-YFNLMQK  256 (305)
Q Consensus       219 ~~~~~~~-----~~-~~~~~~li~~~~~~g~~~~a~~-~~~~m~~  256 (305)
                      ++..-.+     .+ +.-|..|=.-+..+|++.+|-. +|+...+
T Consensus      1005 IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B         1005 LLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp             HHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence            3322111     11 1224455555677888877655 4665543

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=84.30  E-value=6.5  Score=25.55  Aligned_cols=86  Identities=8%  Similarity=-0.009  Sum_probs=57.8

Q ss_pred             ChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263          177 TLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQK  256 (305)
Q Consensus       177 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  256 (305)
                      ..++|..+-+.+...+.  ...+--+=+..+...|++++|..+.+...-||...|-.+..  .+.|--+++...+.++..
T Consensus        21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~   96 (115)
T 2uwj_G           21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG   96 (115)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence            45667777776666552  33333333556778888888888888888888888876644  467777777777777777


Q ss_pred             CCCCCCHHHHH
Q 036263          257 GVFKTDEVSFT  267 (305)
Q Consensus       257 ~g~~p~~~~~~  267 (305)
                      .| .|....|.
T Consensus        97 sg-~p~~q~Fa  106 (115)
T 2uwj_G           97 SS-DPALADFA  106 (115)
T ss_dssp             CS-SHHHHHHH
T ss_pred             CC-CHHHHHHH
Confidence            66 34444443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=83.94  E-value=9.9  Score=27.36  Aligned_cols=26  Identities=15%  Similarity=0.133  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263          199 VCNTLMDVYSRFGCIEFARQVFQRMH  224 (305)
Q Consensus       199 ~~~~li~~~~~~g~~~~a~~~~~~~~  224 (305)
                      .---+-.+|.+.+++++|..+++.++
T Consensus       124 lkykia~C~~~l~~~~~Ai~~Le~Ip  149 (167)
T 3ffl_A          124 VKYKLAECYTVLKQDKDAIAILDGIP  149 (167)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            33346667777777777777777765

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=83.87  E-value=6.9  Score=25.48  Aligned_cols=87  Identities=10%  Similarity=0.011  Sum_probs=57.6

Q ss_pred             CChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 036263          176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNLMQ  255 (305)
Q Consensus       176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  255 (305)
                      ...++|..+-+.+...+.  ...+--+=+..+...|++++|..+.+...-||...|-.+..  .+.|--+++...+.++.
T Consensus        21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la   96 (116)
T 2p58_C           21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA   96 (116)
T ss_dssp             TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence            345667777776666552  33333333556778888888888888888888888877644  35666777777777777


Q ss_pred             HCCCCCCHHHHH
Q 036263          256 KGVFKTDEVSFT  267 (305)
Q Consensus       256 ~~g~~p~~~~~~  267 (305)
                      ..| .|....|.
T Consensus        97 ~sg-~p~~q~Fa  107 (116)
T 2p58_C           97 RSQ-DPRIQTFV  107 (116)
T ss_dssp             TCC-CHHHHHHH
T ss_pred             hCC-CHHHHHHH
Confidence            765 34444443

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=82.99  E-value=9.5  Score=26.42  Aligned_cols=47  Identities=6%  Similarity=-0.030  Sum_probs=39.7

Q ss_pred             hhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263          178 LGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH  224 (305)
Q Consensus       178 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  224 (305)
                      .-+..+-++.+...++.|++.+..+.+++|.+.+++.-|.++|+-++
T Consensus        69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK  115 (152)
T 2y69_E           69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK  115 (152)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            33566667777788889999999999999999999999999999887

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=82.25  E-value=10  Score=26.18  Aligned_cols=68  Identities=7%  Similarity=0.046  Sum_probs=42.7

Q ss_pred             CCChhHHHHHHHHHHhcCCh---HHHHHHHHhccc--C--chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 036263          194 KDNVRVCNTLMDVYSRFGCI---EFARQVFQRMHK--R--TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE  263 (305)
Q Consensus       194 ~~~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~--~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~  263 (305)
                      .|+..+--....++.++...   .++..+++++.+  |  .-..+--+.-++.+.|++++|.+..+.+.+  +.|+.
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N  111 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN  111 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence            45555555556666666654   356666666553  2  223445566777888888888888888777  45654

>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A

Probab=81.68  E-value=10  Score=25.94  Aligned_cols=66  Identities=15%  Similarity=0.167  Sum_probs=38.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhcccCc---hhhHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHHH
Q 036263          200 CNTLMDVYSRFGCIEFARQVFQRMHKRT---LVSWNSIIVGFAVNGF--VGEALEYFNLMQKGVFKTDEVS  265 (305)
Q Consensus       200 ~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~  265 (305)
                      ...++.-|...|+.++|.+.++++..|.   ......+..++=+.++  .+.+..++..+.+.|+-+....
T Consensus        10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~   80 (129)
T 2nsz_A           10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM   80 (129)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence            4566777777777777777777776552   2233333444444322  3556677777777665444444

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=81.62  E-value=7.2  Score=33.08  Aligned_cols=91  Identities=13%  Similarity=-0.040  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhcCc--------cccHHHHHHHHHcCCChHHHHHHHHHHHH---cCCCCCHHHH--H
Q 036263          100 VSTALLDMYAKFGRMDLATVVFDVMRG--------CDFWTALLNGFVKRDYFEEALEYFRVMQI---SGVEPDYLTI--I  166 (305)
Q Consensus       100 ~~~~ll~~~~~~g~~~~a~~~~~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~t~--~  166 (305)
                      +...+...|.+.|+++.|.+.|.++..        ...+-.+|+.+...+++..+...+++...   .+-.|+...-  .
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            445566677777777777777777654        33466666777777777777777766543   2222322111  1


Q ss_pred             HHHHHhcCcCChhHHHHHHHHHhh
Q 036263          167 SVLNVCANVRTLGIGLWMHRYVPK  190 (305)
Q Consensus       167 ~ll~~~~~~~~~~~a~~~~~~~~~  190 (305)
                      .-...+...+++..|...|-+...
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~  236 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLA  236 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhc
Confidence            111223455666666666655443

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=81.09  E-value=6.9  Score=30.72  Aligned_cols=112  Identities=9%  Similarity=-0.002  Sum_probs=66.4

Q ss_pred             HHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C----chhhHHHHHHHHHhcCC
Q 036263          170 NVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R----TLVSWNSIIVGFAVNGF  243 (305)
Q Consensus       170 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~----~~~~~~~li~~~~~~g~  243 (305)
                      ....+.|+++++.+....-++.. +.|...-..+++.+|-.|+++.|.+-++...+  |    ....|..+|.+-..   
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~---   80 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA---   80 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH---
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHH---
Confidence            34567788888887777777765 66777777888888888888888777766653  2    23344444444211   


Q ss_pred             hHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHh--ccCcHHHHHHHHHHHHHH
Q 036263          244 VGEALEYFNLMQKGVFKT-----DEVSFTGALTACS--HAGLIEDGLQYFDIMKKI  292 (305)
Q Consensus       244 ~~~a~~~~~~m~~~g~~p-----~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~  292 (305)
                             -.+....+-.|     ...-...++.+..  ..|+.+.|.++-......
T Consensus        81 -------R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~  129 (273)
T 1zbp_A           81 -------RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  129 (273)
T ss_dssp             -------HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             -------HHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence                   11111111111     2233444454443  457888888877777633

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=80.46  E-value=14  Score=26.62  Aligned_cols=121  Identities=9%  Similarity=-0.042  Sum_probs=59.0

Q ss_pred             cCCCCCH--HHHHHHHHHhcCcCChhHHHHHHHHHhhcC-CCCC-------hhHHHHHHHHHHhcCChHHHHHHHHhccc
Q 036263          156 SGVEPDY--LTIISVLNVCANVRTLGIGLWMHRYVPKQD-FKDN-------VRVCNTLMDVYSRFGCIEFARQVFQRMHK  225 (305)
Q Consensus       156 ~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~~~~  225 (305)
                      .|+.|..  .++-.-+..+...+.++.|.-+.+.+.... ..++       ..++..+.+++...|++..|...|++..+
T Consensus        12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq   91 (167)
T 3ffl_A           12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ   91 (167)
T ss_dssp             ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            4555643  334455666777777777777666654321 1122       12455666777777777777777776431


Q ss_pred             ------CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 036263          226 ------RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIM  289 (305)
Q Consensus       226 ------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  289 (305)
                            ++..++..+    ........         .....++...--.+-.+|.+.+++++|+.+++.+
T Consensus        92 ~~k~l~k~~s~~~~~----~~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A           92 QKKALSKTSKVRPST----GNSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             HHHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             HHHHHhcCCCccccc----cccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence                  111111111    00000000         0012223333334778899999999999987743

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=80.45  E-value=26  Score=29.80  Aligned_cols=228  Identities=9%  Similarity=0.039  Sum_probs=128.1

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChH--HHHHH
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTRMRLY-GTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMD--LATVV  120 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~a~~~  120 (305)
                      +......++..|...|+++...+.+..+... |..+..  ...+++.              ++.........+  .-..+
T Consensus        55 ~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~--------------~~~~l~~~~~~d~~~~~~~  118 (445)
T 4b4t_P           55 SKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQK--------------VMEYLKSSKSLDLNTRISV  118 (445)
T ss_dssp             CHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHH--------------HHHHHHHHCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHH--------------HHHHHhcCCchhHHHHHHH
Confidence            4556777888888888888887777665543 333222  2222222              222222223222  22333


Q ss_pred             HHhcCc------------cccHHHHHHHHHcCCChHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHhcCcCChhHHHH
Q 036263          121 FDVMRG------------CDFWTALLNGFVKRDYFEEALEYFRVMQIS--GVEPD---YLTIISVLNVCANVRTLGIGLW  183 (305)
Q Consensus       121 ~~~~~~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~---~~t~~~ll~~~~~~~~~~~a~~  183 (305)
                      .+....            ......|...+...|++.+|.+++.++...  |....   ...+...+..|...+++..|..
T Consensus       119 i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~  198 (445)
T 4b4t_P          119 IETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATV  198 (445)
T ss_dssp             HHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            333322            122356778888999999999999988643  22221   4466777888999999999999


Q ss_pred             HHHHHhh----cCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhccc-----CchhhHHH----HHHHHHhcCChHHHH
Q 036263          184 MHRYVPK----QDFKDN--VRVCNTLMDVYSRFGCIEFARQVFQRMHK-----RTLVSWNS----IIVGFAVNGFVGEAL  248 (305)
Q Consensus       184 ~~~~~~~----~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~----li~~~~~~g~~~~a~  248 (305)
                      ++.....    ...+|+  ...+...+..+...+++.+|.+.|.++-.     .+...+..    ++....-.+....-.
T Consensus       199 ~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~  278 (445)
T 4b4t_P          199 LSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQN  278 (445)
T ss_dssp             HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTH
T ss_pred             HHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHH
Confidence            8887642    222232  34567778888888999998888777752     12222221    111222222222222


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHhcc--CcHHHHHHHHH
Q 036263          249 EYFNLMQKGVFKTDEVSFTGALTACSHA--GLIEDGLQYFD  287 (305)
Q Consensus       249 ~~~~~m~~~g~~p~~~~~~~li~~~~~~--g~~~~a~~~~~  287 (305)
                      .+.........-++...|..++.+|...  .+++.+.+.|.
T Consensus       279 ~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~  319 (445)
T 4b4t_P          279 DLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYE  319 (445)
T ss_dssp             HHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTC
T ss_pred             HHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHH
Confidence            2333322222235567788888887653  34555544443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	305
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.69
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.59
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.48
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.35
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.03
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.96
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.92
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.89
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.89
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.83
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.83
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.83
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.66
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.58
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.56
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.52
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.41
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.39
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.38
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.36
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.27
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.25
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.22
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.12
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.12
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.07
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.06
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.03
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.01
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.01
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.95
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.83
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.8
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.77
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.74
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.72
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.7
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.63
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.62
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.6
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.55
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.46
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.4
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.34
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.24
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.15
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.05
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.03
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.89
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.52
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	96.49
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.34
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	96.22
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.06
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.03
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	94.81
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	94.25
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	93.83
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	89.68
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	86.94
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	85.55
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	84.06
d2nsza1	129	Programmed cell death 4, PDCD4 {Mouse (Mus musculu	82.55
d1us7b_	201	Hsp90 co-chaperone CDC37 {Human (Homo sapiens) [Ta	80.8
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	80.68

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.7e-14  Score=118.44  Aligned_cols=196  Identities=13%  Similarity=0.089  Sum_probs=165.7

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036263           97 NVMVSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNV  171 (305)
Q Consensus        97 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~  171 (305)
                      +...+..+...+...|+++.|...++....     ...|..+...+...|++++|...+++....+ ..+...+..+...
T Consensus       168 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~  246 (388)
T d1w3ba_         168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACV  246 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHH
Confidence            345677778888889999999999887643     4568888899999999999999999887754 3456778888889


Q ss_pred             hcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHH
Q 036263          172 CANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEAL  248 (305)
Q Consensus       172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~  248 (305)
                      +.+.|++++|...+++..+.. +-+..++..+...+...|++++|.+.++....   .+...+..+...+...|++++|.
T Consensus       247 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  325 (388)
T d1w3ba_         247 YYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV  325 (388)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHH
Confidence            999999999999999998875 55678899999999999999999999998774   46678888999999999999999


Q ss_pred             HHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCc
Q 036263          249 EYFNLMQKGVFKT-DEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQI  299 (305)
Q Consensus       249 ~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~  299 (305)
                      +.|++..+.  .| +..++..+..++.+.|++++|.+.|++..   .+.|+.
T Consensus       326 ~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~l~P~~  372 (388)
T d1w3ba_         326 RLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAI---RISPTF  372 (388)
T ss_dssp             HHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH---TTCTTC
T ss_pred             HHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCC
Confidence            999998874  45 56778889999999999999999999887   566653

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.5e-12  Score=107.73  Aligned_cols=230  Identities=18%  Similarity=0.129  Sum_probs=182.5

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDV  123 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~  123 (305)
                      +...+..+...+.+.|++++|+..|++..+.  .|+.                 ...+..+..++.+.|++++|...+..
T Consensus        32 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~-----------------~~a~~~l~~~~~~~g~~~~A~~~~~~   92 (388)
T d1w3ba_          32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLL-----------------AEAYSNLGNVYKERGQLQEAIEHYRH   92 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC-----------------HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC-----------------HHHHHHHHHHhhhhcccccccccccc
Confidence            5667788888888888888888888888763  3432                 23345556667777777777766655


Q ss_pred             cCc-------------------------------------------------------------------------cccH
Q 036263          124 MRG-------------------------------------------------------------------------CDFW  130 (305)
Q Consensus       124 ~~~-------------------------------------------------------------------------~~~~  130 (305)
                      ...                                                                         ...+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (388)
T d1w3ba_          93 ALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW  172 (388)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHH
Confidence            422                                                                         1224


Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHh
Q 036263          131 TALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR  209 (305)
Q Consensus       131 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  209 (305)
                      ..+...+...|++++|...+++..+.  .| +...+..+...+...|++++|...++...+.+ +.+...+..+...+.+
T Consensus       173 ~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~  249 (388)
T d1w3ba_         173 SNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYE  249 (388)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HhhcccccccCcHHHHHHHHHHHHHh--CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHH
Confidence            55667778889999999999987764  45 46788889999999999999999999998876 5667888889999999


Q ss_pred             cCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 036263          210 FGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYF  286 (305)
Q Consensus       210 ~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~  286 (305)
                      .|++++|...|++..+   .+..+|..+...+...|++++|.+.++..... .+.+...+..+...+.+.|++++|++.|
T Consensus       250 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~  328 (388)
T d1w3ba_         250 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLY  328 (388)
T ss_dssp             TTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHHHHH
Confidence            9999999999998763   35678899999999999999999999998775 3567788889999999999999999999


Q ss_pred             HHHHHHhCCCCCc
Q 036263          287 DIMKKIYRVSPQI  299 (305)
Q Consensus       287 ~~m~~~~~~~p~~  299 (305)
                      ++..   .+.|+.
T Consensus       329 ~~al---~~~p~~  338 (388)
T d1w3ba_         329 RKAL---EVFPEF  338 (388)
T ss_dssp             HHHT---TSCTTC
T ss_pred             HHHH---HhCCCC
Confidence            9876   455653

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=7.7e-12  Score=101.44  Aligned_cols=218  Identities=16%  Similarity=0.047  Sum_probs=171.2

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc----
Q 036263           51 SISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG----  126 (305)
Q Consensus        51 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----  126 (305)
                      .-..+.+.|++++|+..|++..+.  .|+                 +...|..+..++...|++++|...|++..+    
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~al~~--~P~-----------------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~   85 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAAVQQ--DPK-----------------HMEAWQYLGTTQAENEQELLAISALRRCLELKPD   85 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHS--CTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------------CHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc
Confidence            455678999999999999999874  554                 233456677789999999999999998754    


Q ss_pred             -cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH----------------HHHHHHHHhcCcCChhHHHHHHHHHh
Q 036263          127 -CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYL----------------TIISVLNVCANVRTLGIGLWMHRYVP  189 (305)
Q Consensus       127 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----------------t~~~ll~~~~~~~~~~~a~~~~~~~~  189 (305)
                       ...|..+...+...|++++|.+.+++....  .|+..                .....+..+...+...++...+....
T Consensus        86 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al  163 (323)
T d1fcha_          86 NQTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAV  163 (323)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccchhhHHHh--ccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHH
Confidence             456888889999999999999999988653  22211                01111222334466777888888776


Q ss_pred             hcCC-CCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHH
Q 036263          190 KQDF-KDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT-DEV  264 (305)
Q Consensus       190 ~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~  264 (305)
                      +... ..+..++..+...+...|++++|...|++..+   .+...|..+...|...|++++|.+.|++..+.  .| +..
T Consensus       164 ~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~  241 (323)
T d1fcha_         164 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIR  241 (323)
T ss_dssp             HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred             HHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHH--hhccHH
Confidence            6532 34577888899999999999999999999763   35778999999999999999999999998874  34 567


Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHH
Q 036263          265 SFTGALTACSHAGLIEDGLQYFDIMKK  291 (305)
Q Consensus       265 ~~~~li~~~~~~g~~~~a~~~~~~m~~  291 (305)
                      .+..+..+|.+.|++++|++.|++..+
T Consensus       242 a~~~lg~~~~~~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         242 SRYNLGISCINLGAHREAVEHFLEALN  268 (323)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            788899999999999999999998873

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.7e-10  Score=93.34  Aligned_cols=220  Identities=13%  Similarity=-0.025  Sum_probs=165.4

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDV  123 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~  123 (305)
                      +..+|..+...+...|++++|+..|++..+.  .|+.                 ...+..+..++...|++++|.+.++.
T Consensus        52 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~-----------------~~~~~~la~~~~~~~~~~~A~~~~~~  112 (323)
T d1fcha_          52 HMEAWQYLGTTQAENEQELLAISALRRCLEL--KPDN-----------------QTALMALAVSFTNESLQRQACEILRD  112 (323)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC-----------------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHhhhcc--cccc-----------------ccccccccccccccccccccccchhh
Confidence            5778999999999999999999999998873  4542                 23356667778999999999999988


Q ss_pred             cCcc--------------------ccHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhcCcCChhHHH
Q 036263          124 MRGC--------------------DFWTALLNGFVKRDYFEEALEYFRVMQISG-VEPDYLTIISVLNVCANVRTLGIGL  182 (305)
Q Consensus       124 ~~~~--------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~  182 (305)
                      ....                    ......+..+...+.+.+|...+.+..+.. -.++..++..+...+...|++++|.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~  192 (323)
T d1fcha_         113 WLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV  192 (323)
T ss_dssp             HHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhh
Confidence            6330                    001122233444566788888888766542 2345677888888999999999999


Q ss_pred             HHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHC--
Q 036263          183 WMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG--  257 (305)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--  257 (305)
                      ..++...+.. +-+...|..+..+|.+.|++++|.+.|++..+  | +..+|..+..+|...|++++|.+.|++..+.  
T Consensus       193 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p  271 (323)
T d1fcha_         193 DCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR  271 (323)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             cccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            9999998875 55688899999999999999999999999874  3 6678999999999999999999999997662  


Q ss_pred             --------CCCCCHHHHHHHHHHHhccCcHHHHH
Q 036263          258 --------VFKTDEVSFTGALTACSHAGLIEDGL  283 (305)
Q Consensus       258 --------g~~p~~~~~~~li~~~~~~g~~~~a~  283 (305)
                              ........|..+-.++...|+.+.+.
T Consensus       272 ~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~  305 (323)
T d1fcha_         272 KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG  305 (323)
T ss_dssp             TC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred             cChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence                    11112234555555666566655443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=3.7e-08  Score=79.18  Aligned_cols=223  Identities=12%  Similarity=-0.012  Sum_probs=167.7

Q ss_pred             hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHh
Q 036263           45 TVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFG-RMDLATVVFDV  123 (305)
Q Consensus        45 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~  123 (305)
                      ...|+.+-..+.+.+.+++|+++++++.+  +.|+..+                 .|+....++.+.| ++++|...++.
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~--lnP~~~~-----------------a~~~r~~~l~~l~~~~~eal~~~~~  103 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIE--LNAANYT-----------------VWHFRRVLLKSLQKDLHEEMNYITA  103 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHH--HCTTCHH-----------------HHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHH--HCCCChH-----------------HHHHHHHHHHHhCcCHHHHHHHHHH
Confidence            45677777788899999999999999998  4666443                 3566666677766 58999999988


Q ss_pred             cCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCCh
Q 036263          124 MRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNV  197 (305)
Q Consensus       124 ~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  197 (305)
                      ...     ..+|+.+...+.+.|++++|+..++.+.+.  .| +...|..+...+...|++++|...++.+.+.+ +.+.
T Consensus       104 al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~  180 (315)
T d2h6fa1         104 IIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNN  180 (315)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCH
T ss_pred             HHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccH
Confidence            844     667899999999999999999999999875  55 68899999999999999999999999999986 5677


Q ss_pred             hHHHHHHHHHHhcCC------hHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHH
Q 036263          198 RVCNTLMDVYSRFGC------IEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT-DEVSFT  267 (305)
Q Consensus       198 ~~~~~li~~~~~~g~------~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~  267 (305)
                      ..|+.+...+.+.+.      +++|.+.+.+..+  | +...|+.+...+ .....+++.+.++...+....+ +...+.
T Consensus       181 ~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  259 (315)
T d2h6fa1         181 SVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL-QDRGLSKYPNLLNQLLDLQPSHSSPYLIA  259 (315)
T ss_dssp             HHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH-TTTCGGGCHHHHHHHHHHTTTCCCHHHHH
T ss_pred             HHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHH-HhcChHHHHHHHHHHHHhCCCcCCHHHHH
Confidence            788877777776665      5678888877663  4 566777665554 4455788888888876643222 455666


Q ss_pred             HHHHHHhcc---------CcHHHHHHHHHHHH
Q 036263          268 GALTACSHA---------GLIEDGLQYFDIMK  290 (305)
Q Consensus       268 ~li~~~~~~---------g~~~~a~~~~~~m~  290 (305)
                      .+...+...         ..+++|.++++.+.
T Consensus       260 ~l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l~  291 (315)
T d2h6fa1         260 FLVDIYEDMLENQCDNKEDILNKALELCEILA  291 (315)
T ss_dssp             HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            666666442         23455555555443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.96  E-value=1.7e-07  Score=74.85  Aligned_cols=182  Identities=12%  Similarity=-0.004  Sum_probs=143.8

Q ss_pred             CChHHHHHHHHhcCc------cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHH
Q 036263          112 GRMDLATVVFDVMRG------CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMH  185 (305)
Q Consensus       112 g~~~~a~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~  185 (305)
                      +..+.|..+|++..+      ...|...+....+.|+++.|..+|+++.+.........|...+..+.+.|+.+.|.++|
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            345778888887643      23577788889999999999999999876533333567889999999999999999999


Q ss_pred             HHHhhcCCCCChhHHHHHHHH-HHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CC
Q 036263          186 RYVPKQDFKDNVRVCNTLMDV-YSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV-FK  260 (305)
Q Consensus       186 ~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~  260 (305)
                      +...+.+ +.+...|...... +...|+.+.|..+|+.+.+   .+...|...+..+...|+++.|..+|++..+.. ..
T Consensus       158 ~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~  236 (308)
T d2onda1         158 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  236 (308)
T ss_dssp             HHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred             HHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence            9998875 4455555554443 3456899999999999985   366789999999999999999999999987754 44


Q ss_pred             CC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHHhC
Q 036263          261 TD--EVSFTGALTACSHAGLIEDGLQYFDIMKKIYR  294 (305)
Q Consensus       261 p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  294 (305)
                      |+  ...|...+.--...|+.+.+..+++.+.+..+
T Consensus       237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~  272 (308)
T d2onda1         237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  272 (308)
T ss_dssp             GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            43  45788888877788999999999998875554

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=4.1e-08  Score=78.90  Aligned_cols=186  Identities=13%  Similarity=0.064  Sum_probs=148.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCC-hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHh
Q 036263          100 VSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDY-FEEALEYFRVMQISGVEP-DYLTIISVLNVC  172 (305)
Q Consensus       100 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~  172 (305)
                      .++.+...+.+.+..++|+.+++.+..     ...|+....++...|+ +++|+..++...+.  .| +..+|..+...+
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--~p~~~~a~~~~~~~~  122 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRVLV  122 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--HHhhhhHHHHHhHHH
Confidence            445566668888999999999999955     4568888888888774 89999999998774  45 588899999999


Q ss_pred             cCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCC------
Q 036263          173 ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGF------  243 (305)
Q Consensus       173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~------  243 (305)
                      .+.|++++|...++.+.+.. +.+...|..+...+.+.|++++|...++++.+   .+...|+.+...+.+.+.      
T Consensus       123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~  201 (315)
T d2h6fa1         123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV  201 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred             HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhh
Confidence            99999999999999999986 67799999999999999999999999999985   366778877777666655      


Q ss_pred             hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          244 VGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       244 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      +++|.+.+.+..+.. +-+...|.-+...+... ..+++.+.++...
T Consensus       202 ~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~  246 (315)
T d2h6fa1         202 LEREVQYTLEMIKLV-PHNESAWNYLKGILQDR-GLSKYPNLLNQLL  246 (315)
T ss_dssp             HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTT-CGGGCHHHHHHHH
T ss_pred             hHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhc-ChHHHHHHHHHHH
Confidence            578888888887753 23566666665555443 4577777777776

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=3.5e-07  Score=73.68  Aligned_cols=231  Identities=8%  Similarity=-0.091  Sum_probs=161.3

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 036263           46 VQWTSSISRHCRSGCILEAALEFTRMRLYGT-NPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM  124 (305)
Q Consensus        46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~  124 (305)
                      ..++.+-..+...|++++|+..|++..+... .++....              ...+..+...+...|++..+...+...
T Consensus        52 ~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~a~~~~~~a  117 (366)
T d1hz4a_          52 VATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA--------------LWSLIQQSEILFAQGFLQTAWETQEKA  117 (366)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH--------------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566667777788888888888877664311 1111111              122355666788889999888888765


Q ss_pred             Cc-------------cccHHHHHHHHHcCCChHHHHHHHHHHHHcC----CCCCHHHHHHHHHHhcCcCChhHHHHHHHH
Q 036263          125 RG-------------CDFWTALLNGFVKRDYFEEALEYFRVMQISG----VEPDYLTIISVLNVCANVRTLGIGLWMHRY  187 (305)
Q Consensus       125 ~~-------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~  187 (305)
                      ..             ...+..+...+...|+++.+...+.......    ......++......+...+....+...+..
T Consensus       118 l~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  197 (366)
T d1hz4a_         118 FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR  197 (366)
T ss_dssp             HHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            32             1235566778888999999999998876532    222355566666777788888888877776


Q ss_pred             Hhhc----CCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhcccC-------chhhHHHHHHHHHhcCChHHHHHHHHHH
Q 036263          188 VPKQ----DFKD--NVRVCNTLMDVYSRFGCIEFARQVFQRMHKR-------TLVSWNSIIVGFAVNGFVGEALEYFNLM  254 (305)
Q Consensus       188 ~~~~----~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m  254 (305)
                      ....    +..+  ....+......+...|++++|...+++..+.       ....+..+..++...|++++|...+++.
T Consensus       198 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  277 (366)
T d1hz4a_         198 LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL  277 (366)
T ss_dssp             HHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5432    1111  1334566777888999999999999987632       2345667888999999999999999987


Q ss_pred             HH----CCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          255 QK----GVFKTD-EVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       255 ~~----~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      ..    .+..|+ ..++..+...+.+.|++++|.+.+++..
T Consensus       278 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al  318 (366)
T d1hz4a_         278 NENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL  318 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            53    344443 3567778889999999999999998765

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.89  E-value=2.1e-07  Score=74.31  Aligned_cols=178  Identities=10%  Similarity=0.011  Sum_probs=135.6

Q ss_pred             ChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc------cccHHHH
Q 036263           60 CILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG------CDFWTAL  133 (305)
Q Consensus        60 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~~~~~l  133 (305)
                      ..++|..+|++..+.. .|+                 +...|...+....+.|+++.|..+|+.+..      ..+|...
T Consensus        79 ~~~~a~~i~~ral~~~-~p~-----------------~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~  140 (308)
T d2onda1          79 FSDEAANIYERAISTL-LKK-----------------NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQY  140 (308)
T ss_dssp             HHHHHHHHHHHHHTTT-TTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHH
T ss_pred             chHHHHHHHHHHHHHc-CCC-----------------CHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence            3466777777766542 232                 223455666678889999999999998744      2358888


Q ss_pred             HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-HhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC
Q 036263          134 LNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLN-VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC  212 (305)
Q Consensus       134 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  212 (305)
                      +....+.|+.+.|.++|....+.+. .+...|..... -+...|+.+.|..+|+.+.+.. +.+...|...++.+.+.|+
T Consensus       141 ~~~~~~~~~~~~ar~i~~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~  218 (308)
T d2onda1         141 MKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNE  218 (308)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHcCChHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCC
Confidence            9999999999999999999877542 23333433332 2345688999999999998873 6678899999999999999


Q ss_pred             hHHHHHHHHhccc-----C--chhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263          213 IEFARQVFQRMHK-----R--TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG  257 (305)
Q Consensus       213 ~~~a~~~~~~~~~-----~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  257 (305)
                      .+.|..+|++..+     |  ....|...+.--...|+.+.+.++++++.+.
T Consensus       219 ~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~  270 (308)
T d2onda1         219 DNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             HHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999999753     1  2357888888888999999999999998763

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=1.7e-06  Score=69.42  Aligned_cols=226  Identities=11%  Similarity=0.013  Sum_probs=163.5

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCc----
Q 036263           51 SISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVMRG----  126 (305)
Q Consensus        51 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----  126 (305)
                      .-..+...|++++|++++++..+.  .|+......            ...+..+..++...|++++|...|++...    
T Consensus        18 rA~~~~~~g~~~~A~~~~~~aL~~--~~~~~~~~~------------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~   83 (366)
T d1hz4a_          18 RAQVAINDGNPDEAERLAKLALEE--LPPGWFYSR------------IVATSVLGEVLHCKGELTRSLALMQQTEQMARQ   83 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHT--CCTTCHHHH------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhh--CcCCCcHHH------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence            345677899999999999998874  343222111            12346677889999999999999988744    


Q ss_pred             -------cccHHHHHHHHHcCCChHHHHHHHHHHHH----cCCC--C-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcC
Q 036263          127 -------CDFWTALLNGFVKRDYFEEALEYFRVMQI----SGVE--P-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQD  192 (305)
Q Consensus       127 -------~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~  192 (305)
                             ...+..+...+...|++..+...+.+...    .+..  + ....+..+...+...|+++.+...+.......
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~  163 (366)
T d1hz4a_          84 HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL  163 (366)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence                   33466777888999999999999887643    1212  1 13355666778889999999999998876542


Q ss_pred             ----CCCChhHHHHHHHHHHhcCChHHHHHHHHhccc-------C---chhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 036263          193 ----FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK-------R---TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV  258 (305)
Q Consensus       193 ----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  258 (305)
                          .......+......+...++..++...+.+...       .   ....+......+...|++++|...+++.....
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  243 (366)
T d1hz4a_         164 SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE  243 (366)
T ss_dssp             TTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC
T ss_pred             hhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence                223345566677778888999888888776652       1   23456667778899999999999999876543


Q ss_pred             CCC---CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          259 FKT---DEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       259 ~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      ...   ....+..+..++...|++++|...++...
T Consensus       244 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  278 (366)
T d1hz4a_         244 FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN  278 (366)
T ss_dssp             CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            222   23456667888999999999999999876

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=4.4e-08  Score=76.04  Aligned_cols=192  Identities=10%  Similarity=-0.058  Sum_probs=129.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhc
Q 036263          100 VSTALLDMYAKFGRMDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCA  173 (305)
Q Consensus       100 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~  173 (305)
                      ++..+..+|.+.|++++|...|++...     ..+|+.+..++.+.|++++|...|++..+.  .| +..++..+..++.
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~  116 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALY  116 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHHHH
Confidence            445667789999999999999998854     567999999999999999999999998875  45 4667888888999


Q ss_pred             CcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHH-HHHHHHhcCCh----HHHH
Q 036263          174 NVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNS-IIVGFAVNGFV----GEAL  248 (305)
Q Consensus       174 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-li~~~~~~g~~----~~a~  248 (305)
                      ..|++++|...++...+.. +.+......+..++.+.+..+.+..+.......+...+.. ++..+......    +.+.
T Consensus       117 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (259)
T d1xnfa_         117 YGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLK  195 (259)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998875 4455555555555566666555555555544332222221 22222222221    2222


Q ss_pred             HHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCc
Q 036263          249 EYFNLMQKGVFKTD-EVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQI  299 (305)
Q Consensus       249 ~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~  299 (305)
                      ..+.....  ..|+ ..+|..+...+...|++++|...|+...   ...|+.
T Consensus       196 ~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~  242 (259)
T d1xnfa_         196 ADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAV---ANNVHN  242 (259)
T ss_dssp             HHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTCCTT
T ss_pred             HHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HcCCCC
Confidence            21111111  1122 2456667788889999999999999877   455653

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=5.4e-07  Score=69.69  Aligned_cols=195  Identities=11%  Similarity=-0.065  Sum_probs=130.7

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDV  123 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~  123 (305)
                      ....|..+-..|.+.|++++|++.|++..+  +.|+                 +..+|..+..++.+.|++++|...|++
T Consensus        36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~--l~p~-----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~   96 (259)
T d1xnfa_          36 RAQLLYERGVLYDSLGLRALARNDFSQALA--IRPD-----------------MPEVFNYLGIYLTQAGNFDAAYEAFDS   96 (259)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCC-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHhhc--cCCC-----------------CHHHHhhhchHHHHHHHHHHhhhhhhH
Confidence            345677778899999999999999999987  4565                 345567788889999999999999999


Q ss_pred             cCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChh
Q 036263          124 MRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVR  198 (305)
Q Consensus       124 ~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  198 (305)
                      +..     ..++..+...+...|++++|...|+...+.. +.+......+..++.+.+..+....+........  ++..
T Consensus        97 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  173 (259)
T d1xnfa_          97 VLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQW  173 (259)
T ss_dssp             HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCST
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhh
Confidence            855     4568889999999999999999999987753 2234443333444445555555555555544432  2222


Q ss_pred             HHHHHHHHHHhcCCh----HHHHHHHHhcc--cC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 036263          199 VCNTLMDVYSRFGCI----EFARQVFQRMH--KR-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE  263 (305)
Q Consensus       199 ~~~~li~~~~~~g~~----~~a~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~  263 (305)
                      .++ ++..+......    +.+...+....  .| ...+|..+...|...|++++|.+.|++....  .|+.
T Consensus       174 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~  242 (259)
T d1xnfa_         174 GWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN  242 (259)
T ss_dssp             HHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred             hhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCC
Confidence            222 22222222222    22222111111  12 3356778889999999999999999998874  4543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.66  E-value=5e-07  Score=71.48  Aligned_cols=189  Identities=10%  Similarity=-0.018  Sum_probs=133.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhcCc-----------cccHHHHHHHHHcCCChHHHHHHHHHHHHc----CCC-CCHHH
Q 036263          101 STALLDMYAKFGRMDLATVVFDVMRG-----------CDFWTALLNGFVKRDYFEEALEYFRVMQIS----GVE-PDYLT  164 (305)
Q Consensus       101 ~~~ll~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~t  164 (305)
                      |.-....|...|++++|.+.|++..+           ..+|..+..+|.+.|++++|...+++..+.    |-. ....+
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  119 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF  119 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence            45556668889999999999988754           346889999999999999999999876432    211 12445


Q ss_pred             HHHHHHHh-cCcCChhHHHHHHHHHhhc----CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhcccC--c-------h-
Q 036263          165 IISVLNVC-ANVRTLGIGLWMHRYVPKQ----DFKD-NVRVCNTLMDVYSRFGCIEFARQVFQRMHKR--T-------L-  228 (305)
Q Consensus       165 ~~~ll~~~-~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~-------~-  228 (305)
                      +..+...| ...|++++|.+.+++..+.    +-++ ...++..+...|.+.|++++|...|+++...  +       . 
T Consensus       120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~  199 (290)
T d1qqea_         120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK  199 (290)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred             HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence            56666666 4569999999999887542    2122 2456788899999999999999999997631  1       1 


Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC---HHHHHHHHHHHhc--cCcHHHHHHHHHHH
Q 036263          229 VSWNSIIVGFAVNGFVGEALEYFNLMQKGVFK-TD---EVSFTGALTACSH--AGLIEDGLQYFDIM  289 (305)
Q Consensus       229 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~---~~~~~~li~~~~~--~g~~~~a~~~~~~m  289 (305)
                      ..+...+..+...|+++.|...+++..+.... ++   ......++.++..  .+.+++|+..|+.+
T Consensus       200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~  266 (290)
T d1qqea_         200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF  266 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            22445566778899999999999998875311 11   2355667777654  34577887776543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.8e-06  Score=63.76  Aligned_cols=121  Identities=11%  Similarity=-0.024  Sum_probs=93.3

Q ss_pred             HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh
Q 036263          134 LNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI  213 (305)
Q Consensus       134 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  213 (305)
                      ...+...|+++.|++.|+++    .+|+..++..+-.++...|++++|.+.|++.++.+ +.+...|..+..+|.+.|++
T Consensus        12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~   86 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY   86 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence            34566778888888888754    35677778888888888888888888888888876 56677888888888888888


Q ss_pred             HHHHHHHHhccc---C----------------chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 036263          214 EFARQVFQRMHK---R----------------TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF  259 (305)
Q Consensus       214 ~~a~~~~~~~~~---~----------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  259 (305)
                      ++|.+.|++...   .                ...++..+..++...|++++|.+.+....+...
T Consensus        87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~  151 (192)
T d1hh8a_          87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS  151 (192)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            888888877541   0                124566777888999999999999988877433

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.56  E-value=7.2e-06  Score=64.54  Aligned_cols=197  Identities=9%  Similarity=-0.074  Sum_probs=138.4

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 036263           46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTN-PSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM  124 (305)
Q Consensus        46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~  124 (305)
                      ..|......|...|++++|.+.|.+..+.... .+..              ....+|..+..+|.+.|++++|...+++.
T Consensus        38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~--------------~~a~~~~~~g~~y~~~~~~~~A~~~~~~a  103 (290)
T d1qqea_          38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNED--------------EAGNTYVEAYKCFKSGGNSVNAVDSLENA  103 (290)
T ss_dssp             HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCH--------------HHHHHHHHHHHHHHHhCCcHHHHHHHHHh
Confidence            46888889999999999999999998753110 1111              01234677788899999999999999877


Q ss_pred             Cc-----------cccHHHHHHHHH-cCCChHHHHHHHHHHHH----cCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHH
Q 036263          125 RG-----------CDFWTALLNGFV-KRDYFEEALEYFRVMQI----SGVEP-DYLTIISVLNVCANVRTLGIGLWMHRY  187 (305)
Q Consensus       125 ~~-----------~~~~~~li~~~~-~~g~~~~a~~~~~~m~~----~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~  187 (305)
                      ..           ..++..+...|. ..|++++|.+.+++..+    .+-.+ -..++..+...+...|++++|...+++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~  183 (290)
T d1qqea_         104 IQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK  183 (290)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHH
Confidence            44           334666777774 46999999999987643    22222 245678889999999999999999999


Q ss_pred             HhhcCCCCC-----h-hHHHHHHHHHHhcCChHHHHHHHHhcccCc--------hhhHHHHHHHHHh--cCChHHHHHHH
Q 036263          188 VPKQDFKDN-----V-RVCNTLMDVYSRFGCIEFARQVFQRMHKRT--------LVSWNSIIVGFAV--NGFVGEALEYF  251 (305)
Q Consensus       188 ~~~~~~~~~-----~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~li~~~~~--~g~~~~a~~~~  251 (305)
                      +........     . ..+...+..+...|+++.|...+++..+-+        ......++.++-.  .+.+++|+.-|
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y  263 (290)
T d1qqea_         184 LIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEF  263 (290)
T ss_dssp             HHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred             HHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            877532211     1 233455567778999999999999998532        2244556666554  24577787777


Q ss_pred             HHHHH
Q 036263          252 NLMQK  256 (305)
Q Consensus       252 ~~m~~  256 (305)
                      +++.+
T Consensus       264 ~~~~~  268 (290)
T d1qqea_         264 DNFMR  268 (290)
T ss_dssp             TTSSC
T ss_pred             HHHhh
Confidence            65544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.52  E-value=1.7e-07  Score=75.73  Aligned_cols=232  Identities=9%  Similarity=-0.040  Sum_probs=151.5

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhH-HH---HHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036263           48 WTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITF-VT---LLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDV  123 (305)
Q Consensus        48 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~---ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~  123 (305)
                      ++.++....+.+..++|++++++..+  ..|+..+. +.   ++...           ......+...|++++|+..++.
T Consensus        32 ~~~~~~~~~~~~~~~~al~~~~~~l~--~~P~~~~a~~~r~~~l~~l-----------~~~~~~~~~~~~~~~al~~~~~   98 (334)
T d1dcea1          32 TQAVFQKRQAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHL-----------ETEKSPEESAALVKAELGFLES   98 (334)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH-----------HTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHH-----------hhhcchHHHHHHHHHHHHHHHH
Confidence            34444444444455899999999987  46765432 11   11111           1111123444567788888877


Q ss_pred             cCc-----cccHHHHHHHHHcCCC--hHHHHHHHHHHHHcCCCCCHHHHH-HHHHHhcCcCChhHHHHHHHHHhhcCCCC
Q 036263          124 MRG-----CDFWTALLNGFVKRDY--FEEALEYFRVMQISGVEPDYLTII-SVLNVCANVRTLGIGLWMHRYVPKQDFKD  195 (305)
Q Consensus       124 ~~~-----~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  195 (305)
                      ...     ...|..+..++...++  +++|...+.+..+.. +++...+. .....+...+..+.|...++.+.+.+ +-
T Consensus        99 ~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~  176 (334)
T d1dcea1          99 CLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FS  176 (334)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CC
T ss_pred             HHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CC
Confidence            643     4446666666666654  789999998887752 23455544 44466777889999999999988876 56


Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhccc---------------------------------CchhhHHHHHHHHHhcC
Q 036263          196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHK---------------------------------RTLVSWNSIIVGFAVNG  242 (305)
Q Consensus       196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---------------------------------~~~~~~~~li~~~~~~g  242 (305)
                      +...|+.+...+.+.|++++|...++...+                                 ++...+..+...+...|
T Consensus       177 ~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~  256 (334)
T d1dcea1         177 NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQ  256 (334)
T ss_dssp             CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHh
Confidence            788888888888888877655333222210                                 12233344555667778


Q ss_pred             ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCc
Q 036263          243 FVGEALEYFNLMQKGVFKT-DEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQI  299 (305)
Q Consensus       243 ~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~  299 (305)
                      ++++|...+.+..+..  | +..++..+..++.+.|++++|.++++...   .+.|+.
T Consensus       257 ~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai---~ldP~~  309 (334)
T d1dcea1         257 SELESCKELQELEPEN--KWCLLTIILLMRALDPLLYEKETLQYFSTLK---AVDPMR  309 (334)
T ss_dssp             HHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHH---HHCGGG
T ss_pred             hHHHHHHHHHHHHhhC--chHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HHCccc
Confidence            8888888888877643  4 45677788889999999999999999887   345543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=5.1e-06  Score=61.19  Aligned_cols=122  Identities=10%  Similarity=0.023  Sum_probs=98.6

Q ss_pred             HhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHH
Q 036263          171 VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEA  247 (305)
Q Consensus       171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a  247 (305)
                      .+...|+++.|.+.|..+    .+++..+|..+..+|...|++++|.+.|++..+   .+...|..+..+|...|++++|
T Consensus        14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A   89 (192)
T d1hh8a_          14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA   89 (192)
T ss_dssp             HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHH
Confidence            457889999999999864    357788899999999999999999999999884   3678899999999999999999


Q ss_pred             HHHHHHHHHCC------------C--CCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCCc
Q 036263          248 LEYFNLMQKGV------------F--KTD-EVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQI  299 (305)
Q Consensus       248 ~~~~~~m~~~g------------~--~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~  299 (305)
                      .+.|++.....            .  .++ ..++..+..++.+.|++++|.+.++...   .+.|+.
T Consensus        90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~---~~~~~~  153 (192)
T d1hh8a_          90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT---SMKSEP  153 (192)
T ss_dssp             HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTCCSG
T ss_pred             HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCc
Confidence            99999976531            1  111 2455667778999999999999998776   444443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=3.3e-06  Score=56.79  Aligned_cols=85  Identities=13%  Similarity=-0.026  Sum_probs=49.9

Q ss_pred             HhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHH
Q 036263          171 VCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEA  247 (305)
Q Consensus       171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a  247 (305)
                      .+...|++++|...|++.++.. +.+...|..+..+|.+.|++++|...+.+..+   .+...|..+..++...|++++|
T Consensus        12 ~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A   90 (117)
T d1elwa_          12 KALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEA   90 (117)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHH
Confidence            3455556666666666655554 44455566666666666666666666665542   2445566666666666666666


Q ss_pred             HHHHHHHHH
Q 036263          248 LEYFNLMQK  256 (305)
Q Consensus       248 ~~~~~~m~~  256 (305)
                      ...|++..+
T Consensus        91 ~~~~~~a~~   99 (117)
T d1elwa_          91 KRTYEEGLK   99 (117)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            666666555

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=7.5e-06  Score=58.22  Aligned_cols=115  Identities=11%  Similarity=0.018  Sum_probs=83.4

Q ss_pred             HHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCCh
Q 036263          168 VLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFV  244 (305)
Q Consensus       168 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~  244 (305)
                      .-..|.+.|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..+   .+...|..+..+|...|++
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence            3445678888888888888888876 56788888888888888999999888888763   3567888888888899999


Q ss_pred             HHHHHHHHHHHHCCCCCC-HHHHHHHHHH--HhccCcHHHHHHH
Q 036263          245 GEALEYFNLMQKGVFKTD-EVSFTGALTA--CSHAGLIEDGLQY  285 (305)
Q Consensus       245 ~~a~~~~~~m~~~g~~p~-~~~~~~li~~--~~~~g~~~~a~~~  285 (305)
                      ++|...+++....  .|+ ...+..+..+  ....+.++++...
T Consensus        95 ~eA~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          95 RAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999988888874  343 3333333333  2334455555544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.36  E-value=3.6e-06  Score=62.22  Aligned_cols=92  Identities=12%  Similarity=-0.043  Sum_probs=68.3

Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc
Q 036263          131 TALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRF  210 (305)
Q Consensus       131 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  210 (305)
                      -.....+.+.|++++|+..|++..+.. +-+...|..+..+|.+.|++++|...++...+.. +-+...|..+..+|.+.
T Consensus         8 ~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg~~~~~l   85 (201)
T d2c2la1           8 KEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEM   85 (201)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHHHHHHHC
Confidence            344567778888888888887776642 2256677777888888888888888888887654 44567778888888888


Q ss_pred             CChHHHHHHHHhcc
Q 036263          211 GCIEFARQVFQRMH  224 (305)
Q Consensus       211 g~~~~a~~~~~~~~  224 (305)
                      |++++|...|++..
T Consensus        86 ~~~~~A~~~~~~al   99 (201)
T d2c2la1          86 ESYDEAIANLQRAY   99 (201)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            88888888888765

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.27  E-value=8.9e-06  Score=59.97  Aligned_cols=96  Identities=9%  Similarity=-0.149  Sum_probs=85.5

Q ss_pred             CCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHH
Q 036263          160 PDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIV  236 (305)
Q Consensus       160 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~  236 (305)
                      |+...+...-..+.+.|++++|...|+..++.. +.+...|..+..+|.+.|++++|...|++..+  | +..+|..+..
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~   80 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence            677778888889999999999999999998886 67788999999999999999999999999875  4 5678999999


Q ss_pred             HHHhcCChHHHHHHHHHHHH
Q 036263          237 GFAVNGFVGEALEYFNLMQK  256 (305)
Q Consensus       237 ~~~~~g~~~~a~~~~~~m~~  256 (305)
                      +|...|++++|...|++..+
T Consensus        81 ~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          81 CQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHH
Confidence            99999999999999998776

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=1.6e-05  Score=56.43  Aligned_cols=92  Identities=12%  Similarity=0.087  Sum_probs=78.1

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC
Q 036263          132 ALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG  211 (305)
Q Consensus       132 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  211 (305)
                      .....+.+.|++++|+..|++..+.. +-+...|..+..++...|++++|...|+..++.. +-+...|..+..+|...|
T Consensus        15 ~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          15 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcC
Confidence            34567888999999999999888753 2367788888889999999999999999998876 667788999999999999


Q ss_pred             ChHHHHHHHHhccc
Q 036263          212 CIEFARQVFQRMHK  225 (305)
Q Consensus       212 ~~~~a~~~~~~~~~  225 (305)
                      ++++|...+++..+
T Consensus        93 ~~~eA~~~~~~a~~  106 (159)
T d1a17a_          93 KFRAALRDYETVVK  106 (159)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999998874

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=3e-05  Score=51.85  Aligned_cols=90  Identities=10%  Similarity=-0.024  Sum_probs=78.0

Q ss_pred             HHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC
Q 036263          133 LLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFG  211 (305)
Q Consensus       133 li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  211 (305)
                      -...+.+.|++++|+..|++..+.  .| +...|..+-.++...|++++|...++...+.+ +.+...|..+..++...|
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHcc
Confidence            356678889999999999998775  44 67788889999999999999999999999886 677888999999999999


Q ss_pred             ChHHHHHHHHhccc
Q 036263          212 CIEFARQVFQRMHK  225 (305)
Q Consensus       212 ~~~~a~~~~~~~~~  225 (305)
                      ++++|...|++..+
T Consensus        86 ~~~~A~~~~~~a~~   99 (117)
T d1elwa_          86 RFEEAKRTYEEGLK   99 (117)
T ss_dssp             CHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999999874

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.12  E-value=0.00047  Score=54.76  Aligned_cols=137  Identities=12%  Similarity=0.046  Sum_probs=64.5

Q ss_pred             CCCchHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 036263           41 TIDTTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVV  120 (305)
Q Consensus        41 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~  120 (305)
                      ..||..--..+..-|.+.|.++.|..+|..+..                           |..++..+.+.++++.|.++
T Consensus        10 ~~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------------------------~~rl~~~~v~l~~~~~avd~   62 (336)
T d1b89a_          10 NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------------------------FGRLASTLVHLGEYQAAVDG   62 (336)
T ss_dssp             TCC----------------CTTTHHHHHHHTTC---------------------------HHHHHHHHHTTTCHHHHHHH
T ss_pred             cCCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------------------------HHHHHHHHHhhccHHHHHHH
Confidence            345555556677777788888888888876543                           23444445566666666666


Q ss_pred             HHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHH
Q 036263          121 FDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVC  200 (305)
Q Consensus       121 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  200 (305)
                      +.......+|..+...+.+......+     .+...+...+......++..|-..|.+++...+++...... ..+...+
T Consensus        63 ~~k~~~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~  136 (336)
T d1b89a_          63 ARKANSTRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMF  136 (336)
T ss_dssp             HHHHTCHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHH
Confidence            66655555565566555555444332     11122222333344455555555566665555555544322 3444455


Q ss_pred             HHHHHHHHhc
Q 036263          201 NTLMDVYSRF  210 (305)
Q Consensus       201 ~~li~~~~~~  210 (305)
                      +-++..|++.
T Consensus       137 ~~L~~lyak~  146 (336)
T d1b89a_         137 TELAILYSKF  146 (336)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHh
Confidence            5555555554

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=2e-05  Score=53.11  Aligned_cols=94  Identities=12%  Similarity=-0.093  Sum_probs=59.8

Q ss_pred             HHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh---HHHHHHHHhccc--Cc---hhhHHHHHHHH
Q 036263          167 SVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCI---EFARQVFQRMHK--RT---LVSWNSIIVGF  238 (305)
Q Consensus       167 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~--~~---~~~~~~li~~~  238 (305)
                      .+++.+...+++++|++.|+...+.+ +.+..++..+..++.+.++.   ++|.++|+++..  |+   ..+|..+..+|
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            45566666677777777777777665 55666666666666654443   457777776653  21   23556667777


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCH
Q 036263          239 AVNGFVGEALEYFNLMQKGVFKTDE  263 (305)
Q Consensus       239 ~~~g~~~~a~~~~~~m~~~g~~p~~  263 (305)
                      .+.|++++|.+.|++..+  +.|+.
T Consensus        83 ~~~g~~~~A~~~~~~aL~--~~P~~  105 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQ--TEPQN  105 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred             HHHhhhHHHHHHHHHHHH--hCcCC
Confidence            777777777777777776  34543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.07  E-value=2.2e-05  Score=52.12  Aligned_cols=86  Identities=15%  Similarity=0.010  Sum_probs=43.8

Q ss_pred             HHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC
Q 036263          134 LNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGC  212 (305)
Q Consensus       134 i~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  212 (305)
                      ...+.+.|++++|...|++..+.  .| +...|..+..++.+.|++++|...++...+.. +.+...+..+..+|...|+
T Consensus        23 g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          23 GLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence            34444555555555555554443  23 34445555555555555555555555555543 3344555555555555555


Q ss_pred             hHHHHHHHHh
Q 036263          213 IEFARQVFQR  222 (305)
Q Consensus       213 ~~~a~~~~~~  222 (305)
                      +++|.+.+++
T Consensus       100 ~~~A~~~l~~  109 (112)
T d1hxia_         100 ANAALASLRA  109 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555544

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.06  E-value=1.5e-05  Score=52.89  Aligned_cols=86  Identities=13%  Similarity=0.018  Sum_probs=58.8

Q ss_pred             HHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcH
Q 036263          203 LMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLI  279 (305)
Q Consensus       203 li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  279 (305)
                      ....+.+.|++++|...|++..+  | +...|..+..++.+.|++++|...|++..+.. +-+...+..+..++...|++
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~  100 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA  100 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCH
Confidence            44556677777777777777653  3 45677777777777777777777777766642 22456666777777777777


Q ss_pred             HHHHHHHHHH
Q 036263          280 EDGLQYFDIM  289 (305)
Q Consensus       280 ~~a~~~~~~m  289 (305)
                      ++|.+.+++.
T Consensus       101 ~~A~~~l~~~  110 (112)
T d1hxia_         101 NAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777777654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=8.1e-06  Score=55.18  Aligned_cols=96  Identities=8%  Similarity=0.008  Sum_probs=77.1

Q ss_pred             HHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 036263          201 NTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGF---VGEALEYFNLMQKGVFKTDE-VSFTGALTAC  273 (305)
Q Consensus       201 ~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~  273 (305)
                      ..+++.+...+++++|++.|++..+   .+..++..+..++.+.++   +++|+.++++....+..|+. .++..+..+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            4577888899999999999999884   366888888888887554   45799999998876543432 4677888999


Q ss_pred             hccCcHHHHHHHHHHHHHHhCCCCCc
Q 036263          274 SHAGLIEDGLQYFDIMKKIYRVSPQI  299 (305)
Q Consensus       274 ~~~g~~~~a~~~~~~m~~~~~~~p~~  299 (305)
                      .+.|++++|++.|+.+.   .+.|+-
T Consensus        83 ~~~g~~~~A~~~~~~aL---~~~P~~  105 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLL---QTEPQN  105 (122)
T ss_dssp             HHTTCHHHHHHHHHHHH---HHCTTC
T ss_pred             HHHhhhHHHHHHHHHHH---HhCcCC
Confidence            99999999999999998   355653

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.01  E-value=1.3e-05  Score=64.24  Aligned_cols=204  Identities=7%  Similarity=-0.047  Sum_probs=132.6

Q ss_pred             chHhHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCC-HhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 036263           44 TTVQWTSSISRHCRSGC--ILEAALEFTRMRLYGTNPS-HITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVV  120 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~  120 (305)
                      +...|..+..++...++  +++|+..++.+.+.  .|+ ...+.                 ......+...+..+.|...
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~-----------------~~~~~~~~~~~~~~~Al~~  166 (334)
T d1dcea1         106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWD-----------------YRRFVAAQAAVAPAEELAF  166 (334)
T ss_dssp             CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--CTTCHHHHH-----------------HHHHHHHHTCCCHHHHHHH
T ss_pred             cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhh--Cchhhhhhh-----------------hHHHHHHHhccccHHHHHH
Confidence            45555555555555443  56777777776653  222 22221                 1222345667888888888


Q ss_pred             HHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCC
Q 036263          121 FDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKD  195 (305)
Q Consensus       121 ~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  195 (305)
                      ++.+..     ...|+.+...+.+.|++++|...+....+.  .|+.   ......+...+..+++...+....... ++
T Consensus       167 ~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~  240 (334)
T d1dcea1         167 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGR-AE  240 (334)
T ss_dssp             HHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-CC
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-cc
Confidence            887755     445777777788888877775555443321  1211   122233445566667777777776664 45


Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhcccC---chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 036263          196 NVRVCNTLMDVYSRFGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE-VSFTGALT  271 (305)
Q Consensus       196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~  271 (305)
                      +...+..+...+...|+.++|...+.+..+.   +..+|..+...|...|++++|.+.+++..+  +.|+. .-|..+..
T Consensus       241 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~y~~~L~~  318 (334)
T d1dcea1         241 PLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDLRS  318 (334)
T ss_dssp             CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccHHHHHHHHH
Confidence            5666777778888889999999999988865   446777888899999999999999999988  45754 44555544


Q ss_pred             HHh
Q 036263          272 ACS  274 (305)
Q Consensus       272 ~~~  274 (305)
                      .+.
T Consensus       319 ~~~  321 (334)
T d1dcea1         319 KFL  321 (334)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            444

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.01  E-value=7e-05  Score=54.11  Aligned_cols=119  Identities=9%  Similarity=0.009  Sum_probs=74.7

Q ss_pred             HHhcCcCChhHHHHHHHHHhhc--CCCCChhHHHHHHHHHHhcCChHHHHHHHHhcccCchhhHHHHHHHHHhcCChHHH
Q 036263          170 NVCANVRTLGIGLWMHRYVPKQ--DFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEA  247 (305)
Q Consensus       170 ~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  247 (305)
                      ......|++++|.+.|......  |-...            .....+-+...-..+.......+..+...+...|++++|
T Consensus        19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~------------~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~A   86 (179)
T d2ff4a2          19 VHAAAAGRFEQASRHLSAALREWRGPVLD------------DLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV   86 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCSSTTG------------GGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccccc------------cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence            4567788888888888887663  21100            000111111112222233445667777778888888888


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH----HhCCCCCccc
Q 036263          248 LEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKK----IYRVSPQIEH  301 (305)
Q Consensus       248 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~  301 (305)
                      ...++++.+.. +-+...|..++.++.+.|+.++|++.|+.+.+    +.|+.|+.++
T Consensus        87 l~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          87 IAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            88888877743 33667788888888888888888888877642    4677777653

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=0.00012  Score=49.57  Aligned_cols=98  Identities=12%  Similarity=0.099  Sum_probs=66.5

Q ss_pred             HHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-c-------hhhHHHHH
Q 036263          166 ISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-T-------LVSWNSII  235 (305)
Q Consensus       166 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~-------~~~~~~li  235 (305)
                      ..+-..+...|++++|...|.+.++.+ +.+...+..+..+|.+.|++++|.+.++++.+  | +       ..+|..+.
T Consensus         8 k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_           8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            344556677777777777777777765 45677777777888888888888887777653  1 1       13566666


Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 036263          236 VGFAVNGFVGEALEYFNLMQKGVFKTDEVSF  266 (305)
Q Consensus       236 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~  266 (305)
                      ..+...+++++|.+.|++....  .|+....
T Consensus        87 ~~~~~~~~~~~A~~~~~kal~~--~~~~~~~  115 (128)
T d1elra_          87 NSYFKEEKYKDAIHFYNKSLAE--HRTPDVL  115 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--CCCHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHhc--CCCHHHH
Confidence            6777778888888888776653  3444433

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=0.00017  Score=51.60  Aligned_cols=62  Identities=11%  Similarity=0.094  Sum_probs=48.0

Q ss_pred             HHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc
Q 036263          163 LTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK  225 (305)
Q Consensus       163 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  225 (305)
                      .+|+.+..+|.+.|++++|...++..++.+ |.++..|..+..+|...|++++|...|++..+
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  124 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ  124 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            356667777788888888888888887775 55677788888888888888888888888763

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=0.00041  Score=49.47  Aligned_cols=124  Identities=6%  Similarity=-0.106  Sum_probs=82.4

Q ss_pred             cHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 036263          129 FWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS  208 (305)
Q Consensus       129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  208 (305)
                      .+......+.+.|++++|...|.+....-  |.            ..+..+........+       -..+|+.+..+|.
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~------------~~~~~~~~~~~~~~~-------~~~~~~nla~~y~   73 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSWL--EY------------ESSFSNEEAQKAQAL-------RLASHLNLAMCHL   73 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TT------------CCCCCSHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hh------------ccccchHHHhhhchh-------HHHHHHHHHHHHH
Confidence            34455567777788888888887665421  10            000001111111111       1245777889999


Q ss_pred             hcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc
Q 036263          209 RFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT-DEVSFTGALTACSH  275 (305)
Q Consensus       209 ~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~  275 (305)
                      +.|++++|...+++..+  | ++..|..+..+|...|++++|...|++..+.  .| |......+-....+
T Consensus        74 k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~n~~~~~~l~~~~~~  142 (170)
T d1p5qa1          74 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQR  142 (170)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHH
T ss_pred             hhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence            99999999999999874  4 7789999999999999999999999999884  46 44444444444333

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.77  E-value=0.00022  Score=51.40  Aligned_cols=59  Identities=7%  Similarity=-0.066  Sum_probs=30.6

Q ss_pred             HHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 036263          164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRM  223 (305)
Q Consensus       164 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  223 (305)
                      .+..+..++...|++++|...++.+.+.. +.+...|..++.+|.+.|+.++|.+.|+++
T Consensus        69 a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          69 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            34444555555555555555555555543 444555555555555555555555555554

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.74  E-value=0.00045  Score=49.09  Aligned_cols=61  Identities=10%  Similarity=0.017  Sum_probs=45.4

Q ss_pred             HHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc
Q 036263          164 TIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK  225 (305)
Q Consensus       164 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  225 (305)
                      .|+.+-.+|.+.|++++|...++...+.. +.+...|..+..+|...|++++|...|+++.+
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~  126 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE  126 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45556667777788888888877777765 56677777777888888888888888877763

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.72  E-value=0.00034  Score=49.79  Aligned_cols=75  Identities=4%  Similarity=-0.074  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHH
Q 036263          162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVG  237 (305)
Q Consensus       162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~  237 (305)
                      ...|..+..++.+.|++++|...++..++.. +.+...|..+..+|.+.|++++|.+.|++..+  | +......+...
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~  154 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV  154 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            4456667777888888888888888888765 55677888888888888888888888887763  3 34444444443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=0.00014  Score=49.30  Aligned_cols=91  Identities=5%  Similarity=0.006  Sum_probs=74.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCC--C-HHHHHHHH
Q 036263          200 CNTLMDVYSRFGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGV---FKT--D-EVSFTGAL  270 (305)
Q Consensus       200 ~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p--~-~~~~~~li  270 (305)
                      +..+...|.+.|++++|...|.+..+   .+...|..+..+|.+.|++++|...++++.+..   ..+  . ..+|..+.
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            45677889999999999999999874   367889999999999999999999999987632   111  1 24677777


Q ss_pred             HHHhccCcHHHHHHHHHHHH
Q 036263          271 TACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       271 ~~~~~~g~~~~a~~~~~~m~  290 (305)
                      ..+...+++++|.+.|+...
T Consensus        87 ~~~~~~~~~~~A~~~~~kal  106 (128)
T d1elra_          87 NSYFKEEKYKDAIHFYNKSL  106 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHH
Confidence            88888999999999998876

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.63  E-value=0.00092  Score=46.59  Aligned_cols=115  Identities=13%  Similarity=0.026  Sum_probs=73.9

Q ss_pred             ccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHH
Q 036263          128 DFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVY  207 (305)
Q Consensus       128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  207 (305)
                      ..+..-...+.+.|++++|+..|.+....  .|             ......... ......    .....+|+.+..+|
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~-------------~~~~~~~~~-~~~~~~----~~~~~~~~Nla~~~   77 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDF--FI-------------HTEEWDDQI-LLDKKK----NIEISCNLNLATCY   77 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TT-------------TCTTCCCHH-HHHHHH----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Cc-------------chhhhhhHH-HHHhhh----hHHHHHHhhHHHHH
Confidence            34555666777888888888888776542  11             000000000 000000    01234677788888


Q ss_pred             HhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 036263          208 SRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEV  264 (305)
Q Consensus       208 ~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~  264 (305)
                      .+.|++++|.+.+++..+  | ++.+|..+..++...|++++|...|++..+.  .|+..
T Consensus        78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--~P~n~  135 (153)
T d2fbna1          78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNL  135 (153)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCH
T ss_pred             HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--CCCCH
Confidence            888999999888888763  3 6678888888899999999999998888874  45443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.62  E-value=0.00068  Score=47.29  Aligned_cols=108  Identities=14%  Similarity=0.122  Sum_probs=67.1

Q ss_pred             HHHHHHHhcCChHHHHHHHHhcCccccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHH
Q 036263          103 ALLDMYAKFGRMDLATVVFDVMRGCDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGL  182 (305)
Q Consensus       103 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~  182 (305)
                      .-...+.+.|++++|...|+....         .+......... .......    .....+|..+..+|.+.|++++|.
T Consensus        22 ~~G~~~f~~~~y~~A~~~Y~~al~---------~~~~~~~~~~~-~~~~~~~----~~~~~~~~Nla~~~~~l~~~~~Al   87 (153)
T d2fbna1          22 EEGNEFFKKNEINEAIVKYKEALD---------FFIHTEEWDDQ-ILLDKKK----NIEISCNLNLATCYNKNKDYPKAI   87 (153)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH---------TTTTCTTCCCH-HHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHh---------hCcchhhhhhH-HHHHhhh----hHHHHHHhhHHHHHHHhcccchhh
Confidence            344557889999999999887543         11111111110 0111111    112346666777777777777777


Q ss_pred             HHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc
Q 036263          183 WMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK  225 (305)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  225 (305)
                      ..++...+.+ +.+...|..+..+|...|++++|...|++..+
T Consensus        88 ~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~  129 (153)
T d2fbna1          88 DHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS  129 (153)
T ss_dssp             HHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence            7777777765 55677777777777778888888777777763

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.60  E-value=8.4e-05  Score=57.28  Aligned_cols=117  Identities=8%  Similarity=-0.113  Sum_probs=66.7

Q ss_pred             cCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHHHHhcCChHHHHH
Q 036263          173 ANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALE  249 (305)
Q Consensus       173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~  249 (305)
                      .+.|++++|...+++.++.. +.+...+..+...|+..|++++|.+.++...+  | +...+..+...+...+..+++..
T Consensus         7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~   85 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQ   85 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHH
Confidence            45677777777777777765 56677777777778888888888777777763  3 23333333333333322222221


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          250 YFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       250 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      -...-...+-+++...+......+...|+.++|.+.++.+.
T Consensus        86 ~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~  126 (264)
T d1zbpa1          86 GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIE  126 (264)
T ss_dssp             SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            11111111111222333344455667788888888887776

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.55  E-value=0.0091  Score=45.22  Aligned_cols=226  Identities=8%  Similarity=-0.052  Sum_probs=144.3

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHh----cCChHHHHH
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAK----FGRMDLATV  119 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~  119 (305)
                      |+..+..|-..+-+.+++++|++.|++..+.|-   ...+                  ..|...|..    ..+...|..
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~---~~A~------------------~~Lg~~y~~G~~~~~d~~~a~~   59 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKE---NSGC------------------FNLGVLYYQGQGVEKNLKKAAS   59 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC---HHHH------------------HHHHHHHHHTSSSCCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC---HHHH------------------HHHHHHHHcCCCcchhHHHHHH
Confidence            345666677777889999999999999988762   2221                  222333333    457777887


Q ss_pred             HHHhcCc---cccHHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHhcCcCChhHHHHHHHHHhhc
Q 036263          120 VFDVMRG---CDFWTALLNGFVK----RDYFEEALEYFRVMQISGVEPDYLTII-SVLNVCANVRTLGIGLWMHRYVPKQ  191 (305)
Q Consensus       120 ~~~~~~~---~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~  191 (305)
                      .++....   ......+...+..    .++.+.|...++...+.|......... ..............+...+......
T Consensus        60 ~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~  139 (265)
T d1ouva_          60 FYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL  139 (265)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred             hhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcc
Confidence            7777644   2223333333332    567888999998887766432221111 1111223344556666666665554


Q ss_pred             CCCCChhHHHHHHHHHHh----cCChHHHHHHHHhcccC-chhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCC
Q 036263          192 DFKDNVRVCNTLMDVYSR----FGCIEFARQVFQRMHKR-TLVSWNSIIVGFAV----NGFVGEALEYFNLMQKGVFKTD  262 (305)
Q Consensus       192 ~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~  262 (305)
                         .+...+..+...|..    ..+...+...++...++ +......+-..|..    ..++++|..+|++..+.|   +
T Consensus       140 ---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~  213 (265)
T d1ouva_         140 ---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---N  213 (265)
T ss_dssp             ---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---C
T ss_pred             ---cccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc---C
Confidence               356667777777775    45567777777777653 66666667666665    578999999999998887   3


Q ss_pred             HHHHHHHHHHHhc----cCcHHHHHHHHHHHHHHhCCCC
Q 036263          263 EVSFTGALTACSH----AGLIEDGLQYFDIMKKIYRVSP  297 (305)
Q Consensus       263 ~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~p  297 (305)
                      +..+..|...|.+    ..+.+.|.++|+... ..|..+
T Consensus       214 ~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa-~~g~~~  251 (265)
T d1ouva_         214 GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGC-KLGAKG  251 (265)
T ss_dssp             HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHH-HHTCHH
T ss_pred             HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH-HCcCHH
Confidence            4455555566654    347889999999887 666443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.46  E-value=0.0012  Score=46.71  Aligned_cols=122  Identities=11%  Similarity=-0.036  Sum_probs=80.8

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHh
Q 036263          130 WTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR  209 (305)
Q Consensus       130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  209 (305)
                      +......+...|++++|+..|.+..+.  .+..       ...   ....       ...... +.....|..+..+|.+
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~--~~~~-------~~~---~~~~-------~~~~~~-~~~~~~~~nla~~~~~   89 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS-------RAA---AEDA-------DGAKLQ-PVALSCVLNIGACKLK   89 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH-------HHH---SCHH-------HHGGGH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--hhhh-------hhh---hhhH-------HHHHhC-hhhHHHHHHHHHHHHh
Confidence            455566777788888888887765431  0000       000   0000       000000 2245667788889999


Q ss_pred             cCChHHHHHHHHhccc---CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 036263          210 FGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKT-DEVSFTGALTAC  273 (305)
Q Consensus       210 ~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~  273 (305)
                      .|++++|...+.+..+   .+...|..+..+|...|++++|...|++..+.  .| +......+..+.
T Consensus        90 ~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--~p~n~~~~~~l~~~~  155 (169)
T d1ihga1          90 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVK  155 (169)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             hcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence            9999999999999874   36788999999999999999999999999884  45 444444444443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.40  E-value=0.0014  Score=46.43  Aligned_cols=127  Identities=7%  Similarity=-0.120  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHhcCcCChhHHHHHHHHHhhc---CCCC-----------ChhHHHHHHHHHHhcCChHHHHHHHHhccc--
Q 036263          162 YLTIISVLNVCANVRTLGIGLWMHRYVPKQ---DFKD-----------NVRVCNTLMDVYSRFGCIEFARQVFQRMHK--  225 (305)
Q Consensus       162 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--  225 (305)
                      ...+......+.+.|++++|...|+.....   ....           ...+|+.+..+|.+.|++++|...+++..+  
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~   94 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD   94 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence            456777788899999999999999887642   1111           124466678889999999999999999874  


Q ss_pred             -CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcH-HHHHHHHHHHH
Q 036263          226 -RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDE-VSFTGALTACSHAGLI-EDGLQYFDIMK  290 (305)
Q Consensus       226 -~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~-~~a~~~~~~m~  290 (305)
                       .+..+|..+..++...|++++|...|++..+.  .|+. .....+-....+.+.. +...+++..|.
T Consensus        95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f  160 (168)
T d1kt1a1          95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQIFMCQKKAKEHNERDRRTYANMF  160 (168)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence             47788999999999999999999999999884  4544 4444444444444433 34556666665

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.34  E-value=0.00046  Score=47.73  Aligned_cols=43  Identities=12%  Similarity=0.056  Sum_probs=27.1

Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhC
Q 036263          243 FVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYR  294 (305)
Q Consensus       243 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  294 (305)
                      ++++|.+.|++..+  +.|+...+..-+..+      ..|.+++.+.. +.|
T Consensus       101 ~~~~A~~~~~kal~--l~P~~~~~~~~L~~~------~ka~~~~~e~~-k~~  143 (145)
T d1zu2a1         101 NFDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKAPQLHAEAY-KQG  143 (145)
T ss_dssp             HHHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTHHHHHHHHH-HSS
T ss_pred             hHHHhhhhhhcccc--cCCCHHHHHHHHHHH------HHHHHHHHHHH-HHh
Confidence            35778888888877  567766665544443      45556666665 444

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.24  E-value=0.029  Score=44.12  Aligned_cols=226  Identities=12%  Similarity=0.060  Sum_probs=128.2

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCC------------CChhHHHHHHHHHHhcCC
Q 036263           46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPS------------NNVMVSTALLDMYAKFGR  113 (305)
Q Consensus        46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~------------~~~~~~~~ll~~~~~~g~  113 (305)
                      .-|..++..+.+.++++.|.+++.+..      +..+|..+..+|.+...            .+......++..|-..|.
T Consensus        41 ~d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~~e~~la~i~~~~~~~~~d~l~~~v~~ye~~~~  114 (336)
T d1b89a_          41 SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGY  114 (336)
T ss_dssp             TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHhCcHHHHHHHHHHHhhcCHHHHHHHHHHHHHcCC
Confidence            345568888888888888888776542      45566666666655444            444455667788888888


Q ss_pred             hHHHHHHHHhcCc-----cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHH
Q 036263          114 MDLATVVFDVMRG-----CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYV  188 (305)
Q Consensus       114 ~~~a~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~  188 (305)
                      +++...+++....     .+.++-++..|++.+ .++.++.++..   +-..|   ...++..|-..+-+.++.-++..+
T Consensus       115 ~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~---s~~y~---~~k~~~~c~~~~l~~elv~Ly~~~  187 (336)
T d1b89a_         115 FEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELF---WSRVN---IPKVLRAAEQAHLWAELVFLYDKY  187 (336)
T ss_dssp             HHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHH---STTSC---HHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhc---cccCC---HHHHHHHHHHcCChHHHHHHHHhc
Confidence            8888888886533     445777888887765 33333333322   11111   122334444444444444443332


Q ss_pred             hhcC--------CCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--Cc-----------hhhHHHHHHHHHhcCChHHH
Q 036263          189 PKQD--------FKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--RT-----------LVSWNSIIVGFAVNGFVGEA  247 (305)
Q Consensus       189 ~~~~--------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~-----------~~~~~~li~~~~~~g~~~~a  247 (305)
                      ....        -++++.-...++..+.+.++.+...++.....+  |+           ...-..++.-+-+.+++...
T Consensus       188 ~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li  267 (336)
T d1b89a_         188 EEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLV  267 (336)
T ss_dssp             TCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTT
T ss_pred             CCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHHHHHHHHHHHcCHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHH
Confidence            1110        123333334445555555555554444433321  21           11224455556667777777


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 036263          248 LEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFD  287 (305)
Q Consensus       248 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~  287 (305)
                      ..+++...+.|   +....+++.+.|...++++.-+...+
T Consensus       268 ~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i~  304 (336)
T d1b89a_         268 KPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSID  304 (336)
T ss_dssp             HHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHHH
Confidence            77777766655   44688888889999888765544443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.15  E-value=0.00068  Score=52.02  Aligned_cols=118  Identities=10%  Similarity=-0.115  Sum_probs=81.5

Q ss_pred             HHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHH
Q 036263          137 FVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEF  215 (305)
Q Consensus       137 ~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  215 (305)
                      ..+.|++++|+..+++..+.  .| +...+..+...++..|++++|...++...+.. +-+...+..+...+...+..++
T Consensus         6 aL~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHH
Confidence            45679999999999988775  45 67889999999999999999999999998874 3345555555555444444433


Q ss_pred             HHHHHHhcc---cC-chhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263          216 ARQVFQRMH---KR-TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG  257 (305)
Q Consensus       216 a~~~~~~~~---~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  257 (305)
                      +..-.....   .| +...+......+...|+.++|.+.+++..+.
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            322222111   12 2334444566688889999999999988764

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.05  E-value=0.0021  Score=44.28  Aligned_cols=113  Identities=13%  Similarity=0.055  Sum_probs=75.0

Q ss_pred             HcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCc----------CChhHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 036263          138 VKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANV----------RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDV  206 (305)
Q Consensus       138 ~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  206 (305)
                      -+.+.+++|...|+...+.  .| +...+..+-.++...          +.+++|...+++..+.+ +.+...|..+..+
T Consensus         8 ~r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~   84 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA   84 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHH
Confidence            3445577888888777664  45 455666665555533          44577888888888876 5667888888888


Q ss_pred             HHhcCC-----------hHHHHHHHHhcc--cCchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 036263          207 YSRFGC-----------IEFARQVFQRMH--KRTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVF  259 (305)
Q Consensus       207 ~~~~g~-----------~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  259 (305)
                      |...|+           +++|.+.|++..  +|+...|...+..+      .+|.+++.+..+.|+
T Consensus        85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~------~ka~~~~~e~~k~~~  144 (145)
T d1zu2a1          85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT------AKAPQLHAEAYKQGL  144 (145)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred             HHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence            876543           577888888776  46655555444433      466777777766654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.03  E-value=0.0034  Score=43.63  Aligned_cols=86  Identities=9%  Similarity=-0.040  Sum_probs=51.6

Q ss_pred             HhcCcCChhHHHHHHHHHhhcCC-CC----------ChhHHHHHHHHHHhcCChHHHHHHHHhccc---------C----
Q 036263          171 VCANVRTLGIGLWMHRYVPKQDF-KD----------NVRVCNTLMDVYSRFGCIEFARQVFQRMHK---------R----  226 (305)
Q Consensus       171 ~~~~~~~~~~a~~~~~~~~~~~~-~~----------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---------~----  226 (305)
                      .+...|++++|...|++.++..- .|          ....|+.+..+|.+.|++++|...+++..+         +    
T Consensus        18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~   97 (156)
T d2hr2a1          18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK   97 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence            34455666666666665544210 01          134566777777777777777776666542         1    


Q ss_pred             -chhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036263          227 -TLVSWNSIIVGFAVNGFVGEALEYFNLMQK  256 (305)
Q Consensus       227 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  256 (305)
                       ....|+.+..+|...|++++|.+.|++..+
T Consensus        98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          98 LWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence             122456667777777888877777777543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.89  E-value=0.012  Score=40.66  Aligned_cols=94  Identities=13%  Similarity=-0.012  Sum_probs=71.9

Q ss_pred             hHHHHH--HHHHHhcCChHHHHHHHHhccc-----C----------chhhHHHHHHHHHhcCChHHHHHHHHHHHHC---
Q 036263          198 RVCNTL--MDVYSRFGCIEFARQVFQRMHK-----R----------TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG---  257 (305)
Q Consensus       198 ~~~~~l--i~~~~~~g~~~~a~~~~~~~~~-----~----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---  257 (305)
                      ..|..+  ...+...|++++|...|++..+     |          ....|+.+..+|...|++++|.+.+++..+.   
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            345555  5566788999999999998863     1          1357889999999999999999999987642   


Q ss_pred             --CCCCC-----HHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 036263          258 --VFKTD-----EVSFTGALTACSHAGLIEDGLQYFDIMKK  291 (305)
Q Consensus       258 --g~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~  291 (305)
                        ...++     ...+..+..+|...|++++|++.|+...+
T Consensus        88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence              12222     22466678899999999999999998763

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.0083  Score=37.64  Aligned_cols=60  Identities=8%  Similarity=-0.064  Sum_probs=41.1

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhcccC----------chhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036263          198 RVCNTLMDVYSRFGCIEFARQVFQRMHKR----------TLVSWNSIIVGFAVNGFVGEALEYFNLMQKG  257 (305)
Q Consensus       198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  257 (305)
                      ..+-.+...+.+.|++++|...|++..+.          ...+++.+..+|.+.|++++|...+++..+.
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            33445666777777777777777766421          1346777777788888888888888887773

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.012  Score=49.39  Aligned_cols=76  Identities=11%  Similarity=-0.051  Sum_probs=35.5

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 036263          130 WTALLNGFVKRDYFEEALEYFRVMQISGVEP-DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS  208 (305)
Q Consensus       130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  208 (305)
                      +..+...+...|++++|...|++..+.  .| +...|+.+...+...|+..+|...|.+..... +|....+..|...+.
T Consensus       155 ~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~  231 (497)
T d1ya0a1         155 LVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHH
Confidence            334444444555555555555444432  33 23445555555555555555555555444443 334444444444443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.011  Score=37.06  Aligned_cols=65  Identities=8%  Similarity=-0.051  Sum_probs=51.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCC
Q 036263          231 WNSIIVGFAVNGFVGEALEYFNLMQKG-----VFKTD-EVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVSPQ  298 (305)
Q Consensus       231 ~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~  298 (305)
                      +-.+...+.+.|++++|...|++..+.     ...++ ..++..+..++.+.|++++|+..+++..   .+.|+
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL---~l~P~   78 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL---ELDPE   78 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHH---HhCcC
Confidence            346778899999999999999987653     12222 4678899999999999999999999988   34555

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0061  Score=51.18  Aligned_cols=112  Identities=9%  Similarity=-0.114  Sum_probs=61.1

Q ss_pred             CHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc--C-chhhHHHHHHH
Q 036263          161 DYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK--R-TLVSWNSIIVG  237 (305)
Q Consensus       161 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~  237 (305)
                      +...+..+-..+.+.|+.++|...++...+..   ...++..+...+...|++++|...|++..+  | +...|+.+...
T Consensus       119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~  195 (497)
T d1ya0a1         119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAIL  195 (497)
T ss_dssp             ------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHH
T ss_pred             hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence            34455666666677777777776665554322   134566777788888888888888887763  3 45678888888


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 036263          238 FAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHA  276 (305)
Q Consensus       238 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~  276 (305)
                      +...|+..+|...|.+..... +|-..++..|...+.+.
T Consensus       196 ~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         196 ASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHh
Confidence            888888888888888877653 45666777776666543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.06  E-value=0.18  Score=37.62  Aligned_cols=189  Identities=10%  Similarity=-0.030  Sum_probs=120.7

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhcCc---cccHHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCCHHHHH--HH
Q 036263           98 VMVSTALLDMYAKFGRMDLATVVFDVMRG---CDFWTALLNGFVK----RDYFEEALEYFRVMQISGVEPDYLTII--SV  168 (305)
Q Consensus        98 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~--~l  168 (305)
                      +..+..|...+.+.+++++|++.|++..+   ...+..|...|..    ..+...|...+..-...+ .|......  ..
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~-~~~a~~~l~~~~   80 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGCHLLGNLY   80 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc-ccchhhcccccc
Confidence            34455666777888999999999998854   3345555555654    567888988888877665 23222111  12


Q ss_pred             HHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHH----hcCChHHHHHHHHhccc-CchhhHHHHHHHHHh---
Q 036263          169 LNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYS----RFGCIEFARQVFQRMHK-RTLVSWNSIIVGFAV---  240 (305)
Q Consensus       169 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~---  240 (305)
                      ........+.+.|...++...+.|. +..  ...+...+.    .......+...+..... .+...+..+...|..   
T Consensus        81 ~~~~~~~~~~~~a~~~~~~a~~~g~-~~a--~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~  157 (265)
T d1ouva_          81 YSGQGVSQNTNKALQYYSKACDLKY-AEG--CASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRG  157 (265)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHHTTC-HHH--HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS
T ss_pred             ccccccchhhHHHHHHHhhhhhhhh-hhH--HHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCC
Confidence            2223445677889999998888763 222  222323333    23446667777766554 466777778777775   


Q ss_pred             -cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHHhC
Q 036263          241 -NGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSH----AGLIEDGLQYFDIMKKIYR  294 (305)
Q Consensus       241 -~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~  294 (305)
                       ..+...+..+++...+.|   +......+-..+..    ..+++.|..+|+... ..|
T Consensus       158 ~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa-~~g  212 (265)
T d1ouva_         158 TPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKAC-ELE  212 (265)
T ss_dssp             SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH-HTT
T ss_pred             cccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhh-ccc
Confidence             456778888888877765   44444444444443    568999999998876 444

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.03  E-value=0.24  Score=32.27  Aligned_cols=65  Identities=11%  Similarity=-0.062  Sum_probs=51.9

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCC
Q 036263          230 SWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMKKIYRVS  296 (305)
Q Consensus       230 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~  296 (305)
                      -+...++....+|+-++-.++++++.+. -+|++...-.+..+|-+.|...++-+++.+.- +.|++
T Consensus        88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~AC-e~G~K  152 (161)
T d1wy6a1          88 HVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEAC-KKGEK  152 (161)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH-HHhHH
Confidence            4455678888899999999998887664 46778888888999999999999999999887 66654

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=94.81  E-value=0.28  Score=31.95  Aligned_cols=81  Identities=10%  Similarity=-0.081  Sum_probs=43.0

Q ss_pred             CChHHHHHHHHhcCc-cccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhh
Q 036263          112 GRMDLATVVFDVMRG-CDFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPK  190 (305)
Q Consensus       112 g~~~~a~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~  190 (305)
                      +++......+-.+.. ....+.-++.+...|+-+.-.++++.+.+. -+|+......+..+|.+.|...++.+++.+.-+
T Consensus        70 ~Nlk~vv~C~~~~n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe  148 (161)
T d1wy6a1          70 QNLKSVVECGVINNTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK  148 (161)
T ss_dssp             SCTHHHHHHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hcHHHHHHHHHHhcchHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            333344444333332 222344455566666666666666664442 255555666666666666666666666666666


Q ss_pred             cCC
Q 036263          191 QDF  193 (305)
Q Consensus       191 ~~~  193 (305)
                      .|+
T Consensus       149 ~G~  151 (161)
T d1wy6a1         149 KGE  151 (161)
T ss_dssp             TTC
T ss_pred             HhH
Confidence            554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=94.25  E-value=0.41  Score=31.43  Aligned_cols=109  Identities=11%  Similarity=-0.054  Sum_probs=50.6

Q ss_pred             ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcCChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHh----cCChHHHH
Q 036263          142 YFEEALEYFRVMQISGVEPDYLTIISVLNVCANVRTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSR----FGCIEFAR  217 (305)
Q Consensus       142 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~  217 (305)
                      ++++|..+|++..+.|. |..  ...+  +.....+.++|...+++..+.|   ++.....|-..|..    ..+.++|.
T Consensus         8 d~~~A~~~~~kaa~~g~-~~a--~~~l--~~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           8 DLKKAIQYYVKACELNE-MFG--CLSL--VSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHTTC-TTH--HHHH--HTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHHCCC-hhh--hhhh--ccccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence            45566666666655542 111  1111  1233445566666666665554   23333333333332    23455555


Q ss_pred             HHHHhccc-CchhhHHHHHHHHHh----cCChHHHHHHHHHHHHCC
Q 036263          218 QVFQRMHK-RTLVSWNSIIVGFAV----NGFVGEALEYFNLMQKGV  258 (305)
Q Consensus       218 ~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g  258 (305)
                      ++|++..+ .+......|-..|..    ..+.++|.++|++..+.|
T Consensus        80 ~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          80 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            55555543 233333344334433    234555555555555544

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=93.83  E-value=0.5  Score=30.97  Aligned_cols=111  Identities=6%  Similarity=-0.164  Sum_probs=76.8

Q ss_pred             CChhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccc-CchhhHHHHHHHHHh----cCChHHHHHH
Q 036263          176 RTLGIGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMHK-RTLVSWNSIIVGFAV----NGFVGEALEY  250 (305)
Q Consensus       176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~  250 (305)
                      .+.++|...|++..+.|. +  ..+..+.  .....+.++|.+.+++..+ .+......|-..|..    ..+.++|.++
T Consensus         7 kd~~~A~~~~~kaa~~g~-~--~a~~~l~--~~~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~   81 (133)
T d1klxa_           7 KDLKKAIQYYVKACELNE-M--FGCLSLV--SNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY   81 (133)
T ss_dssp             HHHHHHHHHHHHHHHTTC-T--THHHHHH--TCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCCC-h--hhhhhhc--cccccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHH
Confidence            467789999999888773 2  2223332  2345678899999988765 355666666666654    5678999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHHhCC
Q 036263          251 FNLMQKGVFKTDEVSFTGALTACSH----AGLIEDGLQYFDIMKKIYRV  295 (305)
Q Consensus       251 ~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~  295 (305)
                      |++..+.|.   ......|-..|..    ..+.++|.++|+... ..|.
T Consensus        82 ~~~aa~~g~---~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa-~~G~  126 (133)
T d1klxa_          82 YSKACGLND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC-RLGS  126 (133)
T ss_dssp             HHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTC
T ss_pred             HhhhhccCc---chHHHHHHHHHHcCCccCCCHHHHHHHHHHHH-HCCC
Confidence            999998873   3344444444444    468999999999887 5554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.68  E-value=0.85  Score=29.52  Aligned_cols=69  Identities=7%  Similarity=0.009  Sum_probs=43.6

Q ss_pred             CChhHHHHHHHHHHhcC---ChHHHHHHHHhccc--C-c-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 036263          195 DNVRVCNTLMDVYSRFG---CIEFARQVFQRMHK--R-T-LVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVS  265 (305)
Q Consensus       195 ~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~--~-~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~  265 (305)
                      ++..+--...-++.++.   +.+++..+++++.+  | + ...+-.|.-+|.+.|++++|.+.++.+.+  +.|+..-
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~q  108 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ  108 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcHH
Confidence            44444444455555544   35677778877763  2 2 23455667778888888888888888887  4565443

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=86.94  E-value=6.3  Score=31.50  Aligned_cols=235  Identities=11%  Similarity=-0.037  Sum_probs=137.5

Q ss_pred             chHhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 036263           44 TTVQWTSSISRHCRSGCILEAALEFTRMRLYG-TNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFD  122 (305)
Q Consensus        44 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~  122 (305)
                      +...-.....+....|+.++|...+...-..| ..|+  ....++..+...+..+...+-.-+......|+...|..+..
T Consensus       101 ~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~--~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~  178 (450)
T d1qsaa1         101 TTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN--ACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAG  178 (450)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHh
Confidence            55555577788889999999999988887765 3443  34556666666667777777788888888899999999998


Q ss_pred             hcCcc--ccHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC--cCChhHHHHHHHHHhhcCCCCChh
Q 036263          123 VMRGC--DFWTALLNGFVKRDYFEEALEYFRVMQISGVEPDYLTIISVLNVCAN--VRTLGIGLWMHRYVPKQDFKDNVR  198 (305)
Q Consensus       123 ~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~  198 (305)
                      .++..  ......+.....   ...+.....   .  ..++......+..++.+  ..+.+.+..++....... ..+..
T Consensus       179 ~l~~~~~~~~~a~~~l~~~---p~~~~~~~~---~--~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~-~~~~~  249 (450)
T d1qsaa1         179 QMPADYQTIASAIISLANN---PNTVLTFAR---T--TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQ-QLNED  249 (450)
T ss_dssp             TCCGGGHHHHHHHHHHHHC---GGGHHHHHH---H--SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT-TCCHH
T ss_pred             hCChhHHHHHHHHHHHHhC---hHhHHHHHh---c--CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcc-cccHH
Confidence            87652  223333333322   222222211   1  12233333333333333  245666777777665543 22222


Q ss_pred             HHHH----HHHHHHhcCChHHHHHHHHhccc--CchhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036263          199 VCNT----LMDVYSRFGCIEFARQVFQRMHK--RTLVSWNSIIVGFAVNGFVGEALEYFNLMQKGVFKTDEVSFTGALTA  272 (305)
Q Consensus       199 ~~~~----li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  272 (305)
                      -+..    +...+...+..+.+...+.....  .+.....-.+......+++..+...++.|...... ...-.-.+.++
T Consensus       250 ~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~-~~r~~YW~gRa  328 (450)
T d1qsaa1         250 QIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADL  328 (450)
T ss_dssp             HHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCChHHHHHHHHhcCccccc-HHHHHHHHHHH
Confidence            2222    22222334556666666655542  23333344455566677888888888777543222 22222345677


Q ss_pred             HhccCcHHHHHHHHHHHH
Q 036263          273 CSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       273 ~~~~g~~~~a~~~~~~m~  290 (305)
                      ....|+.+.|..+|....
T Consensus       329 ~~~~G~~~~A~~~~~~~a  346 (450)
T d1qsaa1         329 LLERGREAEAKEILHQLM  346 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHcCChhhHHHHHHHHh
Confidence            888888888888888765

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.55  E-value=2.6  Score=25.77  Aligned_cols=45  Identities=7%  Similarity=0.007  Sum_probs=31.7

Q ss_pred             HHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 036263          180 IGLWMHRYVPKQDFKDNVRVCNTLMDVYSRFGCIEFARQVFQRMH  224 (305)
Q Consensus       180 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  224 (305)
                      ++.+-++.+...++.|++.+..+.+++|.+.+++.-|.++|+-++
T Consensus        24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK   68 (105)
T d1v54e_          24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK   68 (105)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            455556666666677777777777777777777777777777666

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.06  E-value=3.1  Score=25.42  Aligned_cols=45  Identities=16%  Similarity=0.211  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 036263          246 EALEYFNLMQKGVFKTDEVSFTGALTACSHAGLIEDGLQYFDIMK  290 (305)
Q Consensus       246 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  290 (305)
                      ++.+-++.+....+.|++....+.+++|-+..++..|..+|+.++
T Consensus        24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK   68 (105)
T d1v54e_          24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK   68 (105)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            344444455555556666666666666666666666666666555

>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Programmed cell death 4, PDCD4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.55  E-value=4.5  Score=26.13  Aligned_cols=66  Identities=15%  Similarity=0.162  Sum_probs=37.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhcccCc---hhhHHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCCCHHH
Q 036263          200 CNTLMDVYSRFGCIEFARQVFQRMHKRT---LVSWNSIIVGFAVNGFV--GEALEYFNLMQKGVFKTDEVS  265 (305)
Q Consensus       200 ~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~g~~p~~~~  265 (305)
                      ...+++-|...|+.++|.+.++++..|.   ...+..+..+.=+.+.-  +.+..++..+...|+-+....
T Consensus        10 ~~~ll~EY~~~~D~~Ea~~~l~eL~~p~~~~e~V~~~i~~ale~~~~~r~~~~~~Ll~~L~~~~~is~~~i   80 (129)
T d2nsza1          10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM   80 (129)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHcCCchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence            4567777777777777777777776542   23333333333343333  234667777777765444333

>d1us7b_ a.205.1.1 (B:) Hsp90 co-chaperone CDC37 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Hsp90 co-chaperone CDC37
superfamily: Hsp90 co-chaperone CDC37
family: Hsp90 co-chaperone CDC37
domain: Hsp90 co-chaperone CDC37
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.80  E-value=3.6  Score=28.88  Aligned_cols=61  Identities=11%  Similarity=-0.050  Sum_probs=38.2

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHhhcCCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 036263           46 VQWTSSISRHCRSGCILEAALEFTRMRLYGTNPSHITFVTLLSGCADFPSNNVMVSTALLDMYAKFGRMDLATVVFDVM  124 (305)
Q Consensus        46 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~  124 (305)
                      ..|...+.-|+..+++++..+.+.+-..   -....+-+.|+-.|..               +--.|+-+.+.++.++.
T Consensus         6 ~k~~~~~k~Fg~l~~y~~S~~FL~~hp~---l~~E~t~d~Ll~~af~---------------~qmegk~~~~~qvaHQ~   66 (201)
T d1us7b_           6 EKYEKQIKHFGMLRRWDDSQKYLSDNVH---LVCEETANYLVIWCID---------------LEVEEKCALMEQVAHQT   66 (201)
T ss_dssp             HHHHHHHHHHHHCCSHHHHHHHHHTTGG---GCSHHHHHHHHHHHHH---------------HHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccCHHHHHHHHHhCch---hcchhhhcHHHHHHHH---------------HHHcCCHHHHHHHHHHH
Confidence            4577788889988999988887765332   1234444544443321               22357888888777664

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.68  E-value=5.2  Score=25.63  Aligned_cols=49  Identities=10%  Similarity=0.108  Sum_probs=32.3

Q ss_pred             CChhHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhccc
Q 036263          176 RTLGIGLWMHRYVPKQDFKDN-VRVCNTLMDVYSRFGCIEFARQVFQRMHK  225 (305)
Q Consensus       176 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~  225 (305)
                      .+.+++..+++.+.+.+ +.+ ...+..|.-+|.+.|++++|.+.++.+.+
T Consensus        52 ~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          52 NDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             HHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            44567777777777654 223 23555666667778888888888777763