Citrus Sinensis ID: 036268

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MGLVSWEMVYDSLDDALFEKNEKFKTTRLKNLDHNIEKYNLYGFTSGVQAWIYEAIGGLPSTCVVKTKNKIPRIVQWKPMASSRINFAEVYSFFNDESRIGDVLQTLEPNSKESSKKYWLTVKDYMPSIPDWVHKVFLNQLWNNGDCAVDSLVFEDHLNNYLCGRQHTMSKSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSLLTFCDDKRYKLKFKLLEVIFPRWLEYVGFYNIRPELRSADP
Secondary Structure (PSIPRED)
ccccEEEHHHcHHHHHHHHHcccccccccccccccccccEEccccHHHHHHHHHHHccccccEEEEccccccEEEEEcccccccccHHHHHHccccccHHHHHHHHccccccccccEEEEEEEEccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHcccccccccccccccEEEEEEEccccEEEEEEEEccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEHHHHHccHHHHHHHHcccccccHHHccccccEEEEcccccHHHHHHHHHHHccccccEEEEcccccccEEEccccccccEcHHHHHHHHccccccccccccccccccccccEEEEEHHcccccccHHHHHHHHHHHHHccccccccEHHHHHHHHHHccccccccccccccEEEEEEEEEcccEEEEEEEEccccEEEEEEcccEEccccccEEEEHHHHHHHHHHHHHHHHHcccHHHccccc
Coil and Loop (DISEMBL)
MGLVSWEMVYDSLDDALFEKNEKFKTTRLKNLDHNiekynlygftsGVQAWIYEAIgglpstcvvktknkiprivqwkpmassrinfaevysffndesrigdvlqtlepnskesskKYWLTVKdympsipdWVHKVFLNQlwnngdcavdsLVFEDHLnnylcgrqhtmsksmtdvDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSlltfcddkrYKLKFKLLEVIFPRWLeyvgfynirpelrsadp
Flexible Loop (DISEMBL)
MGLVSWEMVYDSLDDALFEKNEKfkttrlknldhnIEKYNLYGFTSGVQAWIYEAIGGLPSTCVVKTKNKIPrivqwkpmassrINFAEVYSFFNDESRIGDvlqtlepnskesskKYWLTVKDYMPSIPDWVHKVFLNQLWNNGDCAVDSLVFEDHLNNYLCGRQHTMSKSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSlltfcddkryKLKFKLLEVIFPRWLEYVgfynirpelrsadp
Low Complexity Region (SEG)
MGLVSWEMVYDSLDDALFEKNEKFKTTRLKNLDHNIEKYNLYGFTSGVQAWIYEAIGGLPSTCVVKTKNKIPRIVQWKPMASSRINFAEVYSFFNDESRIGDVLQTLEPNSKESSKKYWLTVKDYMPSIPDWVHKVFLNQLWNNGDCAVDSLVFEDHLNNYLCGRQHTMSKSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSLLTFCDDKRYKLKFKLLEVIFPRWLEYVGFYNIRPELRSADP
Disordered region (IsUnstruct)
***VSWEMVYDSLDDALFEKNEKFKTTRLKNLDHNIEKYNLYGFTSGVQAWIYEAIGGLPSTCVVKTKNKIPRIVQWKPMASSRINFAEVYSFFNDESRIGDVLQT**********KYWLTVKDYMPSIPDWVHKVFLNQLWNNGDCAVDSLVFEDHLNNYLCGRQHTMSKSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSLLTFCDDKRYKLKFKLLEVIFPRWLEYVGFYNIR********
Disordered Region (DISOPRED)
*GLVSWEMVYDSLDDALFEKNEKFKTTRLKNLDHNIEKYNLYGFTSGVQAWIYEAIGGLPSTCVVKTKNKIPRIVQWKPMASSRINFAEVYSFFNDESRIGD****************WLTVKDYMPSIPDWVHKVFLNQLWNNGDCAVDSLVFEDHLNNYLCGRQHTMSKSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSLLTFCDDKRYKLKFKLLEVIFPRWLEYVGFYNI*********
Disordered Region (DISEMBL)
MGLVSWEMVYDSLDDALFEKNEKFKTTRLKNLDHNIEKYNLYGFTSGVQAWIYEAIGGLPSTCVVKTKNKIPRIVQWKPMASSRINFAEVYSFFNDESRIGDVLQTLEPNSKESSKKYWLTVKDYMPSIPDWVHKVFLNQLWNNGDCAVDSLVFEDHLNNYLCGRQHTMSKSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSLLTFCDDKRYKLKFKLLEVIFPRWLEYVGFYNIRPELRSADP
Disordered Region (DISPRO)
*GLVSWEMVYDSLDDALFEKNEKFKTTRLKNLDHNIEKYNLYGFTSGVQAWIYEAIGGLPSTCVVKTKNKIPRIVQWKPMASSRINFAEVYSFFNDESRIGDVLQTLEPNSKESSKKYWLTVKDYMPSIPDWVHKVFLNQLWNNGDCAVDSLVFEDHLNNYLCGRQHTMSKSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSLLTFCDDKRYKLKFKLLEVIFPRWLEYVGFYNIRPELR****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGLVSWEMVYDSLDDALFEKNEKFKTTRLKNLDHNIEKYNLYGFTSGVQAWIYEAIGGLPSTCVVKTKNKIPRIVQWKPMASSRINFAEVYSFFNDESRIGDVLQTLEPNSKESSKKYWLTVKDYMPSIPDWVHKVFLNQLWNNGDCAVDSLVFEDHLNNYLCGRQHTMSKSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSLLTFCDDKRYKLKFKLLEVIFPRWLEYVGFYNIRPELRSADP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
147767516	205	hypothetical protein VITISV_041526 [Viti	0.333	0.404	0.313	1e-05
147778025	701	hypothetical protein VITISV_042738 [Viti	0.333	0.118	0.313	2e-05
147841861	497	hypothetical protein VITISV_008804 [Viti	0.357	0.179	0.297	8e-05
147800488	183	hypothetical protein VITISV_011864 [Viti	0.333	0.453	0.301	0.0001
147839068	306	hypothetical protein VITISV_029148 [Viti	0.333	0.271	0.301	0.0001

>gi|147767516|emb|CAN66713.1| hypothetical protein VITISV_041526 [Vitis vinifera]

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 46/83 (55%)

Query: 156 DHLNNYLCGRQHTMSKSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSLLTFCDDK 215
           D L +Y+ G Q   S    DVD++ +P+N+  +HWV+  V   +  ++IYDSL+   ++ 
Sbjct: 111 DILIDYVNGLQPLYSVKWPDVDIVYVPINVRASHWVLGVVHLHRRIIYIYDSLMGINNNA 170

Query: 216 RYKLKFKLLEVIFPRWLEYVGFY 238
           R ++  K L  + P  L  + +Y
Sbjct: 171 RLQVAIKPLAKLLPHILNAIAYY 193

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147778025|emb|CAN65286.1| hypothetical protein VITISV_042738 [Vitis vinifera]

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 45/83 (54%)

Query: 156 DHLNNYLCGRQHTMSKSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSLLTFCDDK 215
           D L NY  G Q   S    DVD++ +P+N+  +HWV+  V   +  +++YDSL+   ++ 
Sbjct: 545 DILINYANGLQPLYSIKWPDVDIVYVPINVRASHWVLGVVYLHRRIIYVYDSLMGINNNA 604

Query: 216 RYKLKFKLLEVIFPRWLEYVGFY 238
           R ++  K L  + P  L  + +Y
Sbjct: 605 RLQVAIKALAKLLPHILNAIAYY 627

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147841861|emb|CAN69232.1| hypothetical protein VITISV_008804 [Vitis vinifera]

 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 5/94 (5%)

Query: 156 DHLNNYLCGRQHTMSKSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSLLTFCDDK 215
           D L +Y+ G     S   +++D++ +P+N+   HWV+  V   + K+++YDSL+    D 
Sbjct: 405 DILVDYVNGLHPIPSMKWSEMDIVYVPINVRSMHWVLGVVHLAQGKIFVYDSLIGINSDN 464

Query: 216 RYKLKFKLLEVIFPRWLEYVGFYNIRPELRSADP 249
           R K     L  + PR L    +Y      +S DP
Sbjct: 465 RLKGAIIPLAKVLPRILHATSYYR-----KSGDP 493

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147800488|emb|CAN68582.1| hypothetical protein VITISV_011864 [Vitis vinifera]

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 45/83 (54%)

Query: 156 DHLNNYLCGRQHTMSKSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSLLTFCDDK 215
           D L +Y  G Q   S    DVD++ +P+N+  +HWV+  V   +  +++YDSL+   ++ 
Sbjct: 36  DILIDYANGLQPLYSVKWPDVDIVYVPINVRVSHWVLGVVHLHRRIIYVYDSLMXINNNA 95

Query: 216 RYKLKFKLLEVIFPRWLEYVGFY 238
           R ++  K L  + P  L  + +Y
Sbjct: 96  RLQVXIKPLTXLLPHILNAIAYY 118

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147839068|emb|CAN59773.1| hypothetical protein VITISV_029148 [Vitis vinifera]

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 45/83 (54%)

Query: 156 DHLNNYLCGRQHTMSKSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSLLTFCDDK 215
           D L +Y  G Q   S    DVD++ +P+N+  +HWV+  V   +  +++YDSL+   ++ 
Sbjct: 197 DILIDYANGLQPLYSVKWPDVDIVYVPINVWASHWVLGVVHLHRRIIYVYDSLMGINNNA 256

Query: 216 RYKLKFKLLEVIFPRWLEYVGFY 238
           R ++  K L  + P  L  + +Y
Sbjct: 257 RLQVAIKPLAKLLPHILNAIAYY 279

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
TAIR|locus:2203058	611	AT1G37020 [Arabidopsis thalian	0.433	0.176	0.254	1.7e-05
TAIR|locus:2157141	921	AT5G45570 [Arabidopsis thalian	0.317	0.085	0.265	8.3e-05
TAIR|locus:2115860	808	AT4G08430 [Arabidopsis thalian	0.313	0.096	0.262	0.00023

TAIR|locus:2203058 AT1G37020 [Arabidopsis thaliana (taxid:3702)]

 Score = 89 (36.4 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
 Identities = 30/118 (25%), Positives = 56/118 (47%)

Query:   128 SIPDWVH-KVFLNQLWN--NGDCAVDSLVFE--DHLNNYLCGRQHT----MSKSMTDVDM 178
             S+ DW+   + + ++ N  N   + D   +    +  N+L G  HT     +K  T+VD 
Sbjct:   400 SLMDWLGLMILIRKMKNDYNKHYSSDFKTYNWTGYYVNHLNGTSHTDAATNNKWFTNVDH 459

Query:   179 LLIPVNLDGAHWVVARVDFRKNKVWIYDSLLTFCDDKRYKLKFKLLEVIFPRWL-EYV 235
             L   + ++  HWV    + + N++++YDS+ T  ++     +   L  I P  L EY+
Sbjct:   460 LYGCLFVNENHWVALDFNLKTNRIYVYDSIPTPVEELEMVQQCMFLRKIIPTMLSEYI 517

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

TAIR|locus:2157141 AT5G45570 [Arabidopsis thaliana (taxid:3702)]

 Score = 91 (37.1 bits), Expect = 8.3e-05, Sum P(2) = 8.3e-05
 Identities = 21/79 (26%), Positives = 35/79 (44%)

Query:   154 FEDHLNNYLCGRQHTMSKSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSLLTFCD 213
             +ED +N        T  K   DVD L   + ++G HWV   +D    +V +YDS+ +   
Sbjct:   746 YEDQVNGTAHCEAATNKKWFVDVDHLYAYLFVNGNHWVALDIDLTNKRVNVYDSIPSLTT 805

Query:   214 DKRYKLKFKLLEVIFPRWL 232
             D    ++   +  + P  L
Sbjct:   806 DTEMAIQCMFVMTMIPAML 824

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=ISS

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

TAIR|locus:2115860 AT4G08430 [Arabidopsis thaliana (taxid:3702)]

 Score = 86 (35.3 bits), Expect = 0.00023, Sum P(2) = 0.00023
 Identities = 21/80 (26%), Positives = 36/80 (45%)

Query:   154 FEDHLNNYL-CGRQHTMSKSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSLLTFC 212
             +ED +N    C       K   DVD L   + ++G HWV   +D  K ++ +YDS+ +  
Sbjct:   633 YEDQVNGTAQCDAAKN-KKWFVDVDHLYAYLFVNGNHWVALDIDLPKKRINVYDSIPSLT 691

Query:   213 DDKRYKLKFKLLEVIFPRWL 232
              D    ++   +  + P  L
Sbjct:   692 TDTEMVIQCMFVMTMIPAML 711

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.22	0.691

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

No confident hit detected by STRING

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	249
pfam02902	216	pfam02902, Peptidase_C48, Ulp1 protease family, C-	8e-07

>gnl|CDD|217278 pfam02902, Peptidase_C48, Ulp1 protease family, C-terminal catalytic domain

 Score = 48.3 bits (115), Expect = 8e-07
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 169 MSKSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSL 208
             K + DVD++ IP+N DG HWV+  ++  K  + I DSL
Sbjct: 76  NKKWLFDVDIIYIPINWDGKHWVLLIINLPKKTITILDSL 115

This domain contains the catalytic triad Cys-His-Asn. Length = 216

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	249
KOG0778	511	consensus Protease, Ulp1 family [Posttranslational	99.95
PLN03189	490	Protease specific for SMALL UBIQUITIN-RELATED MODI	99.81
COG5160	578	ULP1 Protease, Ulp1 family [Posttranslational modi	99.76
PF02902	216	Peptidase_C48: Ulp1 protease family, C-terminal ca	99.46
KOG3246	223	consensus Sentrin-specific cysteine protease (Ulp1	98.22
KOG0779	595	consensus Protease, Ulp1 family [Posttranslational	97.32
KOG0778	511	consensus Protease, Ulp1 family [Posttranslational	82.69
PF03290	423	Peptidase_C57: Vaccinia virus I7 processing peptid	80.43

>KOG0778 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.3e-28  Score=238.09  Aligned_cols=132  Identities=20%  Similarity=0.263  Sum_probs=107.1

Q ss_pred             hccCcccchhhhhhcccCcc-----------ccccceeeeecCCCCCCc-hhhHHHhhhhhhc------CCC-----ccc
Q 036268           93 FFNDESRIGDVLQTLEPNSK-----------ESSKKYWLTVKDYMPSIP-DWVHKVFLNQLWN------NGD-----CAV  149 (249)
Q Consensus        93 ~f~~~~r~~~v~q~Lq~~~k-----------~~~kr~~lT~~d~~~~~p-~wv~~~F~nq~~~------~g~-----c~~  149 (249)
                      ..+.++.+..+.+..+++++           +.++++.||.+|+.++.| +|||+-..|.|+.      ..+     ||.
T Consensus       282 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~It~~dl~tl~~~~WLNDevINfYm~ll~ers~~~~~yp~~h~  361 (511)
T KOG0778|consen  282 VKKEDSFPPLTEEREAQVQRAFSSRNSTEILVTHFNIDITGKDLQTLRPGNWLNDEVINFYMELLKERSKKDSKYPKVHA  361 (511)
T ss_pred             ccCccccccccHHHHHHHHHHhccCCcccceehhccccccHHHHhhccCccchhHHHHHHHHHHHHhhccccCCCceEEE
Confidence            34455555555555555444           447889999999999988 8999777777764      344     899


Q ss_pred             cceeccccc--cccccccccccccCceeecEEEEeeeCCCCeEEEEEEEcCCCeEEEEeCCCCCCchhHHHHHHHHHHH
Q 036268          150 DSLVFEDHL--NNYLCGRQHTMSKSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSLLTFCDDKRYKLKFKLLEV  226 (249)
Q Consensus       150 ~~l~~~d~l--~GY~~VkRWTkkVDIFskDlILIPInv~n~HW~LaVId~r~K~I~YYDSLgg~n~~~~~~li~~yLak  226 (249)
                      |+.+|+..+  +||++|||||++||||++|+||||||++ +||||||||+++|+|+||||||+.....| ..+.+||..
T Consensus       362 FnTFFy~kL~~~gy~~VkRWTk~v~if~~d~i~vPIH~~-vHW~l~vid~r~k~i~y~DS~~~~~nr~~-~aL~~Yl~~  438 (511)
T KOG0778|consen  362 FNTFFYTKLVGRGYAGVKRWTKKVDIFDKDIIFVPIHLG-VHWCLAVIDLREKTIEYYDSLGGGPNRIC-DALAKYLQD  438 (511)
T ss_pred             EechhhhhhhhcchHHHHhHhhccCccccceeEeeeecC-ceEEEEEEEcccceEEEeeccCCCCcchH-HHHHHHHHH
Confidence            999998775  6999999999999999999999999995 99999999999999999999997755555 666666655

>PLN03189 Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional

Probab=99.81  E-value=1.7e-20  Score=181.24  Aligned_cols=142  Identities=19%  Similarity=0.235  Sum_probs=104.2

Q ss_pred             hhhhcccccc--ce-ee--ecccccceeeeeeeh--hhccCcccchhhhhhcccCccccccceeeeecCCCCCCchhhHH
Q 036268           63 CVVKTKNKIP--RI-VQ--WKPMASSRINFAEVY--SFFNDESRIGDVLQTLEPNSKESSKKYWLTVKDYMPSIPDWVHK  135 (249)
Q Consensus        63 ~~~~~~n~~~--ri-v~--~~~~~~~~~n~~~~~--~~f~~~~r~~~v~q~Lq~~~k~~~kr~~lT~~d~~~~~p~wv~~  135 (249)
                      =|.+|+...+  .| |.  -+++.+.+=.++||.  +|.||+. |++++.+|++..+...+.+        +. -+++|+
T Consensus       266 ~V~~al~~~~~~~vlvs~~~~~i~IT~~DL~~L~Pg~WLNDeV-INfYm~LL~er~~~~p~~~--------~k-~h~FNT  335 (490)
T PLN03189        266 EVKRAFSANNRRKVLVTHENSNIDITGEILRCLKPGAWLNDEV-INLYLELLKEREAREPKKF--------LK-CHFFNT  335 (490)
T ss_pred             HHHHHhcCCCccceeeecCCCceEEEHHHhhccCCCCccCHHH-HHHHHHHHHHhhhcCcccc--------cc-eEEEeh
Confidence            3555665554  23 32  245666666888888  8999999 9999999986542221110        01 146677


Q ss_pred             HhhhhhhcCCCccccceeccccccccccccccccc----cCceeecEEEEeeeCCCCeEEEEEEEcCCCeEEEEeCCCCC
Q 036268          136 VFLNQLWNNGDCAVDSLVFEDHLNNYLCGRQHTMS----KSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSLLTF  211 (249)
Q Consensus       136 ~F~nq~~~~g~c~~~~l~~~d~l~GY~~VkRWTkk----VDIFskDlILIPInv~n~HW~LaVId~r~K~I~YYDSLgg~  211 (249)
                      ||+++|...+.           ..||.+|+|||++    +++|++|+||||||.+ +||||+|||+++++|.||||||+.
T Consensus       336 FFytkL~~~~~-----------~ygY~~VrRWTk~kKigv~Lfs~D~IFIPIh~n-~HWsLaVId~k~k~I~yyDSLgg~  403 (490)
T PLN03189        336 FFYKKLVSGKS-----------GYDYKAVRRWTTQKKLGYHLIDCDKIFVPIHQE-IHWTLAVINKKDQKFQYLDSLKGR  403 (490)
T ss_pred             HHHHHHhhcCC-----------cCChHHHHHHhhhcccccccccCceEEeeeecC-CeeEEEEEEcCCCeEEEEeCCCCC
Confidence            77777766542           2599999999974    5799999999999986 999999999999999999999998


Q ss_pred             CchhHHHHHHHHHHHH
Q 036268          212 CDDKRYKLKFKLLEVI  227 (249)
Q Consensus       212 n~~~~~~li~~yLak~  227 (249)
                      +. ..++.+.+||...
T Consensus       404 ~~-~vL~~L~rYL~~E  418 (490)
T PLN03189        404 DP-KILDALAKYYVDE  418 (490)
T ss_pred             CH-HHHHHHHHHHHHH
Confidence            65 4566666776553

>COG5160 ULP1 Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=1.9e-19  Score=175.51  Aligned_cols=114  Identities=24%  Similarity=0.394  Sum_probs=82.9

Q ss_pred             eeeecccccceeeeeeeh--hhccCcccchhhhhhcccCccccccceeeeecCCCCCCchhhHHHhhhhhhcCCCccccc
Q 036268           74 IVQWKPMASSRINFAEVY--SFFNDESRIGDVLQTLEPNSKESSKKYWLTVKDYMPSIPDWVHKVFLNQLWNNGDCAVDS  151 (249)
Q Consensus        74 iv~~~~~~~~~~n~~~~~--~~f~~~~r~~~v~q~Lq~~~k~~~kr~~lT~~d~~~~~p~wv~~~F~nq~~~~g~c~~~~  151 (249)
                      ++.+.++++--=.|+++.  +|.||.- +.+++..|++.++-+.++            |+ ||  -||+||+...     
T Consensus       375 ~~~~~~i~IT~~D~~~L~~~~wLNDtI-IdFy~k~ls~~sk~~s~~------------~~-vh--~FnTFFYT~L-----  433 (578)
T COG5160         375 FNDRSSIEITNQDFKRLRNGDWLNDTI-IDFYMKLLSKISKNTSKR------------EQ-VH--LFNTFFYTKL-----  433 (578)
T ss_pred             ccCcCcceeehHhhhhhccccchhhHH-HHHHHHHHHHhccCcccc------------cc-eE--EeehhhHHHH-----
Confidence            455566666666666666  6777776 777777776665433211            11 11  2333333331     


Q ss_pred             eeccccccccccccccccccCceeecEEEEeeeCCCCeEEEEEEEcCCCeEEEEeCCCCCCch
Q 036268          152 LVFEDHLNNYLCGRQHTMSKSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSLLTFCDD  214 (249)
Q Consensus       152 l~~~d~l~GY~~VkRWTkkVDIFskDlILIPInv~n~HW~LaVId~r~K~I~YYDSLgg~n~~  214 (249)
                           ...||++|||||+++|||++|+|+||||+. .||||||||.+++.|.|||||++...+
T Consensus       434 -----srrGy~gVrrW~kk~dif~~k~I~iPIni~-~HW~l~II~~~~~~i~~~DSLan~~~~  490 (578)
T COG5160         434 -----SRRGYSGVRRWTKKTDIFSKKYIFIPINIS-YHWFLAIIDNPKKNILYFDSLANTHDP  490 (578)
T ss_pred             -----HHHHhHHHHHHHhccCccccceEEEEeccc-ceEEEEEeecCcceeEEecccccCcHH
Confidence                 146999999999999999999999999997 999999999999999999999998744

>PF02902 Peptidase_C48: Ulp1 protease family, C-terminal catalytic domain This family belongs to family C48 of the peptidase classification

Probab=99.46  E-value=2.1e-13  Score=111.07  Aligned_cols=56  Identities=29%  Similarity=0.578  Sum_probs=51.7

Q ss_pred             cccccccccccccc---CceeecEEEEeeeCCCCeEEEEEEEcCCCeEEEEeCCCCCCc
Q 036268          158 LNNYLCGRQHTMSK---SMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSLLTFCD  213 (249)
Q Consensus       158 l~GY~~VkRWTkkV---DIFskDlILIPInv~n~HW~LaVId~r~K~I~YYDSLgg~n~  213 (249)
                      ...+.++.+|++..   +++++|+|++|||.++.||+|++||++.++|.+||||++...
T Consensus        62 ~~~~~~~~~~~~~~~~~~l~~~~~i~iPin~~~~HW~l~vi~~~~~~i~~~DSl~~~~~  120 (216)
T PF02902_consen   62 KDFYNGVQRWFRKKNKKNLFDKDYIFIPININNNHWVLLVIDLPKKRIYVYDSLGSSNN  120 (216)
T ss_dssp             HHCHHHCGGGGTTCCTSTGGGSSEEEEEEEETTTEEEEEEEETTTTEEEEE-TTSTSSH
T ss_pred             hHhhhhhhhhhhccccccccccCEEEEEEechhhccceeEEcccccEEEEEeccccccc
Confidence            45789999999988   999999999999997799999999999999999999999887

; InterPro: IPR003653 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins contain cysteine peptidases belonging to MEROPS peptidase family C48 (Ulp1 endopeptidase family, clan CE). The protein fold of the peptidase domain for members of this family resembles that of adenain, the type example for clan CE. This group of sequences also contains a number of hypothetical proteins, which have not yet been characterised, and non-peptidase homologues. These are proteins that have either been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of the peptidases in the family. The Ulp1 endopeptidase family contain the deubiquitinating enzymes (DUB) that can de-conjugate ubiquitin or ubiquitin-like proteins from ubiquitin-conjugated proteins. They can be classified in 3 families according to sequence homology [, ]: Ubiquitin carboxyl-terminal hydrolase (UCH) (see PDOC00127 from PROSITEDOC), Ubiquitin-specific processing protease (UBP) (see PDOC00750 from PROSITEDOC), and ubiquitin-like protease (ULP) specific for de-conjugating ubiquitin-like proteins. In contrast to the UBP pathway, which is very redundant (16 UBP enzymes in yeast), there are few ubiquitin-like proteases (only one in yeast, Ulp1). Ulp1 catalyses two critical functions in the SUMO/Smt3 pathway via its cysteine protease activity. Ulp1 processes the Smt3 C-terminal sequence (-GGATY) to its mature form (-GG), and it de-conjugates Smt3 from the lysine epsilon-amino group of the target protein []. Crystal structure of yeast Ulp1 bound to Smt3 [] revealed that the catalytic and interaction interface is situated in a shallow and narrow cleft where conserved residues recognise the Gly-Gly motif at the C-terminal extremity of Smt3 protein. Ulp1 adopts a novel architecture despite some structural similarity with other cysteine protease. The secondary structure is composed of seven alpha helices and seven beta strands. The catalytic domain includes the central alpha helix, beta-strands 4 to 6, and the catalytic triad (Cys-His-Asp). This profile is directed against the C-terminal part of ULP proteins that displays full proteolytic activity [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1EUV_A 2HL8_A 2HKP_A 2HL9_A 1XT9_A 2BKQ_C 2BKR_A 2IO1_E 1TH0_B 1TGZ_A ....

>KOG3246 consensus Sentrin-specific cysteine protease (Ulp1 family) [General function prediction only]

Probab=98.22  E-value=2.3e-06  Score=77.03  Aligned_cols=48  Identities=23%  Similarity=0.432  Sum_probs=43.4

Q ss_pred             ccCceeecEEEEeeeCCC--------CeEEEEEEEcCCCeEEEEeCCCCCCchhHH
Q 036268          170 SKSMTDVDMLLIPVNLDG--------AHWVVARVDFRKNKVWIYDSLLTFCDDKRY  217 (249)
Q Consensus       170 kVDIFskDlILIPInv~n--------~HW~LaVId~r~K~I~YYDSLgg~n~~~~~  217 (249)
                      ..+++++|+|++|||-++        +||+|-|+..++.++.||||+++.|...+-
T Consensus        82 pl~l~~k~~iflpiNDn~~~~~~~GGsHWSLLV~sr~~~~f~hyDS~~n~nt~~a~  137 (223)
T KOG3246|consen   82 PLDLNDKDFIFLPINDNSNVTRASGGSHWSLLVFSRPDGKFYHYDSLSNGNTKDAK  137 (223)
T ss_pred             hhhcCCCceEEEEecCCCcccccCCCcceEEEEEEeeCCcEEEeecccCCCcHHHH
Confidence            568999999999999875        599999999999999999999999987643

>KOG0779 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=4.7e-05  Score=75.96  Aligned_cols=70  Identities=16%  Similarity=0.190  Sum_probs=53.2

Q ss_pred             CchhhHHHhhhhhhcCCCccccceeccc--cccccccccccccccCceeecEEEEeeeCCCCeEEEEEEEcCCCe
Q 036268          129 IPDWVHKVFLNQLWNNGDCAVDSLVFED--HLNNYLCGRQHTMSKSMTDVDMLLIPVNLDGAHWVVARVDFRKNK  201 (249)
Q Consensus       129 ~p~wv~~~F~nq~~~~g~c~~~~l~~~d--~l~GY~~VkRWTkkVDIFskDlILIPInv~n~HW~LaVId~r~K~  201 (249)
                      +-++.|  ||+.||+...|..-.=--++  .......+++|++.+|+|.+|.|++|+|.. .||.||+|+.+.+.
T Consensus       391 ~s~~~h--~f~tffyk~l~~~~~~~~~d~~~~~~~~~~~~~~~~~d~~~k~yi~~P~~E~-~hw~laiic~p~~e  462 (595)
T KOG0779|consen  391 LSNDRH--IFSTFFYKRLCRKLRQKSNDQIQDNRAVRLRTWTRHFDLFNKDYVFVPTHER-FHWKLAIICNPDLE  462 (595)
T ss_pred             cCcchh--hhhhHHHhhhhhhhhhhhhhhhhccccCceeeeeeccccccceeEEecCchH-hhhhccccccCccc
Confidence            335666  77777777777532111122  224788999999999999999999999998 99999999998753

>KOG0778 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=82.69  E-value=0.34  Score=48.69  Aligned_cols=81  Identities=21%  Similarity=0.276  Sum_probs=56.0

Q ss_pred             ccchhhHHHHHHHhcCCCchhhhhccccccceeeecccccceeeeeeeh--hhccCcccchhhhhhcccCccccccceee
Q 036268           43 GFTSGVQAWIYEAIGGLPSTCVVKTKNKIPRIVQWKPMASSRINFAEVY--SFFNDESRIGDVLQTLEPNSKESSKKYWL  120 (249)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~riv~~~~~~~~~~n~~~~~--~~f~~~~r~~~v~q~Lq~~~k~~~kr~~l  120 (249)
                      +.|---++=+.+|.++-         |...-+|..+.+.+.+=.+.+|.  +|+|||. |++++++|.+-++...     
T Consensus       290 ~l~~~~~~~~~~~~~~~---------~~~~~~~~~~~i~It~~dl~tl~~~~WLNDev-INfYm~ll~ers~~~~-----  354 (511)
T KOG0778|consen  290 PLTEEREAQVQRAFSSR---------NSTEILVTHFNIDITGKDLQTLRPGNWLNDEV-INFYMELLKERSKKDS-----  354 (511)
T ss_pred             cccHHHHHHHHHHhccC---------CcccceehhccccccHHHHhhccCccchhHHH-HHHHHHHHHhhccccC-----
Confidence            34445556666666643         33455677777888888999998  9999999 9999999999874331     


Q ss_pred             eecCCCCCCc--hhhHHHhhhhhhcCC
Q 036268          121 TVKDYMPSIP--DWVHKVFLNQLWNNG  145 (249)
Q Consensus       121 T~~d~~~~~p--~wv~~~F~nq~~~~g  145 (249)
                             ..|  +.+|+|||..+-..|
T Consensus       355 -------~yp~~h~FnTFFy~kL~~~g  374 (511)
T KOG0778|consen  355 -------KYPKVHAFNTFFYTKLVGRG  374 (511)
T ss_pred             -------CCceEEEEechhhhhhhhcc
Confidence                   133  455667776665443

>PF03290 Peptidase_C57: Vaccinia virus I7 processing peptidase; InterPro: IPR004970 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=80.43  E-value=2.2  Score=42.25  Aligned_cols=40  Identities=20%  Similarity=0.271  Sum_probs=34.4

Q ss_pred             cCceeecEEEEeeeCCCCeEEEEEEEcCCCeEEEEeCCCCC
Q 036268          171 KSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSLLTF  211 (249)
Q Consensus       171 VDIFskDlILIPInv~n~HW~LaVId~r~K~I~YYDSLgg~  211 (249)
                      |.=-++..+.+|.==. .||-|+|+|-.++-+..|||-|..
T Consensus       226 ik~~~~RyvmFgfcY~-~Hwkc~IfDk~~~~v~FydSgG~~  265 (423)
T PF03290_consen  226 IKNSKKRYVMFGFCYM-SHWKCCIFDKEKKIVYFYDSGGNI  265 (423)
T ss_pred             HhhccccEEEeeeeeh-hcceEEEEeccccEEEEEcCCCCC
Confidence            3345677889998876 999999999999999999998875

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This is a group of cysteine peptidases which constitute MEROPS peptidase family C57 (clan CE). The type example is vaccinia virus I7 processing peptidase (vaccinia virus); protein I7 is expressed in the late phase of infection [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	249
2xph_A	238	Crystal Structure Of Human Senp1 With The Bound Cob		4e-04
2xre_A	230	Detection Of Cobalt In Previously Unassigned Human		4e-04
2iyc_A	226	Senp1 Native Structure Length = 226		4e-04
2iy0_A	226	Senp1 (Mutant) Sumo1 Rangap Length = 226		5e-04
2ckg_A	225	The Structure Of Senp1 Sumo-2 Co-Complex Suggests A		5e-04
2g4d_A	205	Crystal Structure Of Human Senp1 Mutant (C603s) In		5e-04

>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt Length = 238

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Query: 176 VDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSL 208
           VD+LL+P++L G HW +A VDFRK  +  YDS+
Sbjct: 115 VDILLVPIHL-GVHWCLAVVDFRKKNITYYDSM 146

>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1 Structure Length = 230

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Query: 176 VDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSL 208
           VD+LL+P++L G HW +A VDFRK  +  YDS+
Sbjct: 107 VDILLVPIHL-GVHWCLAVVDFRKKNITYYDSM 138

>pdb|2IYC|A Chain A, Senp1 Native Structure Length = 226

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Query: 176 VDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSL 208
           VD+LL+P++L G HW +A VDFRK  +  YDS+
Sbjct: 103 VDILLVPIHL-GVHWCLAVVDFRKKNITYYDSM 134

>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap Length = 226

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Query: 176 VDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSL 208
           VD+LL+P++L G HW +A VDFRK  +  YDS+
Sbjct: 103 VDILLVPIHL-GVHWCLAVVDFRKKNITYYDSM 134

>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A Structural Basis For Discrimination Between Sumo Paralogues During Processing Length = 225

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Query: 176 VDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSL 208
           VD+LL+P++L G HW +A VDFRK  +  YDS+
Sbjct: 103 VDILLVPIHL-GVHWCLAVVDFRKKNITYYDSM 134

>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex With Sumo-1 Length = 205

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/33 (54%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Query: 176 VDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSL 208
           VD+LL+P++L G HW +A VDFRK  +  YDS+
Sbjct: 82  VDILLVPIHL-GVHWCLAVVDFRKKNITYYDSM 113

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	249
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 4e-04
 Identities = 37/293 (12%), Positives = 86/293 (29%), Gaps = 72/293 (24%)

Query: 13  LDDALFEKNEKFKTTRLKNLDHNIEKYNLYGFTSGVQA----WIYEAIG------GLPST 62
           +D  +  K+    T RL     + ++  +  F   V      ++   I        + + 
Sbjct: 51  IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110

Query: 63  CVVKTKNKIPRIVQ-WKPMASSRI----NFAEVYSFFNDESRIG--------------DV 103
             ++ ++++    Q +     SR+       +          +               DV
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170

Query: 104 LQTLEPNSKESSKKYWLTVKDYMPSIPDWVHKVFLNQLWNNGDCAVDSLV---------- 153
             + +   K   K +WL +K+   + P+ V ++ L +L    D    S            
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNC--NSPETVLEM-LQKLLYQIDPNWTSRSDHSSNIKLRI 227

Query: 154 --FEDHLNNYLCGRQHTMSKSMTDVDMLLIPVNLDGA--HWVVARVDFR-------KNKV 202
              +  L   L  + +           LL+   L            +         + K 
Sbjct: 228 HSIQAELRRLLKSKPYENC--------LLV---LLNVQNAKAWNAFNLSCKILLTTRFKQ 276

Query: 203 WIYDSLLT------FCDDKRYKLKFKLLEVIFPRWLEYVGFYNIRPELRSADP 249
            + D L          D     L    ++ +  ++L+     ++  E+ + +P
Sbjct: 277 -VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-CRPQDLPREVLTTNP 327

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	249
3eay_A	323	Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq	99.8
1euv_A	221	ULP1 protease; SUMO hydrolase, ubiquitin-like prot	99.79
2bkr_A	212	Sentrin-specific protease 8; protein-binding-hydro	99.78
2xph_A	238	Sentrin-specific protease 1; hydrolase, cysteine p	99.75
1th0_A	226	SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE	99.74
2oix_A	186	Xanthomonas outer protein D; CLAN CE family 48 cys	99.61

>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}

Probab=99.80  E-value=2.1e-20  Score=170.74  Aligned_cols=141  Identities=18%  Similarity=0.178  Sum_probs=100.1

Q ss_pred             ecccccceeeeeeeh--hhccCcccchhhhhhcccCccccccceeeeecCCCCCCchhhHHHhhhhhhcCCCcccccee-
Q 036268           77 WKPMASSRINFAEVY--SFFNDESRIGDVLQTLEPNSKESSKKYWLTVKDYMPSIPDWVHKVFLNQLWNNGDCAVDSLV-  153 (249)
Q Consensus        77 ~~~~~~~~~n~~~~~--~~f~~~~r~~~v~q~Lq~~~k~~~kr~~lT~~d~~~~~p~wv~~~F~nq~~~~g~c~~~~l~-  153 (249)
                      ..|+...+-.+++|.  .|+||+. |+++++.|+...  ..       ++..+. -+.+|+|||..+-..+.-..-.-+ 
T Consensus        30 k~~i~it~~Dl~~L~~~~wLND~I-InFyl~~L~~e~--~~-------~~~~~r-~h~FnSFFy~kL~~~~~~~~~~~~~   98 (323)
T 3eay_A           30 KGGLGVTNEDLECLEEGEFLNDVI-IDFYLKYLILEK--AS-------DELVER-SHIFSSFFYKCLTRKENNLTEDNPN   98 (323)
T ss_dssp             SSCEEEEHHHHHTTSTTCCCCHHH-HHHHHHHHHHHT--SC-------HHHHHT-EEECCTHHHHHHSCC--------CC
T ss_pred             CCceEEEHHHHHhhCCCCCcCHHH-HHHHHHHHHhhh--cc-------ccccCc-EEEEchHHHHHHHhccccccccccc
Confidence            566777788888887  7999999 999999884210  00       000011 134567777777654321000000 


Q ss_pred             ccccccccccccccccccCceeecEEEEeeeCCCCeEEEEEEEcCCC---------------------------------
Q 036268          154 FEDHLNNYLCGRQHTMSKSMTDVDMLLIPVNLDGAHWVVARVDFRKN---------------------------------  200 (249)
Q Consensus       154 ~~d~l~GY~~VkRWTkkVDIFskDlILIPInv~n~HW~LaVId~r~K---------------------------------  200 (249)
                      .....+||++|+|||+++|||++|+||||||.+ +||+|||||++.+                                 
T Consensus        99 ~s~~~~~y~~VrrWtrkvdlf~kD~I~IPIn~~-~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  177 (323)
T 3eay_A           99 LSMAQRRHKRVRTWTRHINIFNKDYIFVPVNES-SHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLR  177 (323)
T ss_dssp             SCHHHHHHTTSGGGGTTCCGGGCSEEEEEEEET-TEEEEEEEECTTCSSCBCC---------------------------
T ss_pred             chhHHHHHHHHHHHHhhcccccCCEEEEecCCC-CceEEEEEecCCcccccccccccccccccccccccccccccccccc
Confidence            011236899999999999999999999999995 9999999999853                                 


Q ss_pred             -----------------------------eEEEEeCCCCCCchhHHHHHHHHHHHHhh
Q 036268          201 -----------------------------KVWIYDSLLTFCDDKRYKLKFKLLEVIFP  229 (249)
Q Consensus       201 -----------------------------~I~YYDSLgg~n~~~~~~li~~yLak~l~  229 (249)
                                                   +|.||||||+.......+.+.+||....-
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~~~~~Lr~YL~~E~~  235 (323)
T 3eay_A          178 TTSTLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWE  235 (323)
T ss_dssp             ----------------------CCCCBCSEEEEECSSCCSSHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccCCCCeEEEEECCCCCCcchHHHHHHHHHHHHHH
Confidence                                         69999999998777788888888887544

>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A

Probab=99.79  E-value=1.5e-19  Score=152.91  Aligned_cols=113  Identities=19%  Similarity=0.363  Sum_probs=80.6

Q ss_pred             hhhhhcccCcccc---ccceeeeecCCCCCCc-hhhHHHhhhhh----hc-CCCccccceecccc--cccccccccccc-
Q 036268          102 DVLQTLEPNSKES---SKKYWLTVKDYMPSIP-DWVHKVFLNQL----WN-NGDCAVDSLVFEDH--LNNYLCGRQHTM-  169 (249)
Q Consensus       102 ~v~q~Lq~~~k~~---~kr~~lT~~d~~~~~p-~wv~~~F~nq~----~~-~g~c~~~~l~~~d~--l~GY~~VkRWTk-  169 (249)
                      .|...|.+.....   ..+..||.+|+..+.| .|||+...|.+    .. ..+++.|+.++...  ..||.+|+|||+ 
T Consensus        14 ~v~~~l~~~~~~~l~~~~~i~i~~~Dl~~L~~~~wLND~vI~fy~~~l~~~~~~~~~f~s~f~~~l~~~~~~~v~rw~~~   93 (221)
T 1euv_A           14 QVQKALASRENTQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTPNTVAFNSFFYTNLSERGYQGVRRWMKR   93 (221)
T ss_dssp             HHHHHHTCSSCCEEEEETTEEEEHHHHGGGSTTCCCBHHHHHHHHHHHHHHSTTEEECCTHHHHHHHHHTGGGTTTTTGG
T ss_pred             HHHHHhcCCCCeeeecCCCeEEEHHHHhhhcCCCCCCHHHHHHHHHHHHhcCCCeEEEEcHHHHHhhhhccHHHHHHHHh
Confidence            3445555433311   5566778888887754 68884433333    32 34455444333222  258999999998 


Q ss_pred             -ccCceeecEEEEeeeCCCCeEEEEEEEcCCCeEEEEeCCCCCCch
Q 036268          170 -SKSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSLLTFCDD  214 (249)
Q Consensus       170 -kVDIFskDlILIPInv~n~HW~LaVId~r~K~I~YYDSLgg~n~~  214 (249)
                       ++++|++|+|+||||.++.||+|+|||+++++|.|||||++....
T Consensus        94 ~~~~~~~~~~i~iPin~~~~HW~l~vi~~~~~~i~~~DSl~~~~~~  139 (221)
T 1euv_A           94 KKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNA  139 (221)
T ss_dssp             GTSCGGGCSEEEEEEEETTTEEEEEEEETTTTEEEEECSSCCSCCH
T ss_pred             ccCCcccCCEEEEEEEcCCCeEEEEEEEcCCCEEEEEecCCCCCcc
Confidence             789999999999999977999999999999999999999976544

>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A

Probab=99.78  E-value=1.6e-19  Score=150.81  Aligned_cols=144  Identities=14%  Similarity=0.154  Sum_probs=93.0

Q ss_pred             ceeeecccccceeeeeeeh--hhccCcccchhhhhhcccCccccccceeeeecCCCCCCchhhH---HHhhhhhhcCCCc
Q 036268           73 RIVQWKPMASSRINFAEVY--SFFNDESRIGDVLQTLEPNSKESSKKYWLTVKDYMPSIPDWVH---KVFLNQLWNNGDC  147 (249)
Q Consensus        73 riv~~~~~~~~~~n~~~~~--~~f~~~~r~~~v~q~Lq~~~k~~~kr~~lT~~d~~~~~p~wv~---~~F~nq~~~~g~c  147 (249)
                      .++.-.++...+=.++++.  .|.||+. |+++++.|++.....          -.+.+ ..++   +||+.+       
T Consensus         4 ~~l~~~~~~l~~~Dl~~L~~~~wLND~i-I~fy~~~L~~~~~~~----------~~~~~-~~~~p~~s~f~~~-------   64 (212)
T 2bkr_A            4 VVLSYMDSLLRQSDVSLLDPPSWLNDHI-IGFAFEYFANSQFHD----------SSDHV-SFISPEVTQFIKC-------   64 (212)
T ss_dssp             EEEEETTEEEEHHHHHTTSTTSCCBHHH-HHHHHHHHHHTTTGG----------GTTTE-EEECHHHHHHHHH-------
T ss_pred             EEEEECCEEEeHHHHhhcCCCCCcCHHH-HHHHHHHHHHhhccC----------CCCcE-EEEChHHHHHHHh-------
Confidence            3555555655555666665  6777777 777777776654210          00111 1111   233321       


Q ss_pred             cccceeccccccccccccccccccCceeecEEEEeeeC------CCCeEEEEEEEcCCCeEEEEeCCCCCCchhHHHHHH
Q 036268          148 AVDSLVFEDHLNNYLCGRQHTMSKSMTDVDMLLIPVNL------DGAHWVVARVDFRKNKVWIYDSLLTFCDDKRYKLKF  221 (249)
Q Consensus       148 ~~~~l~~~d~l~GY~~VkRWTkkVDIFskDlILIPInv------~n~HW~LaVId~r~K~I~YYDSLgg~n~~~~~~li~  221 (249)
                                ..+|+.|+|||+++|+|++|+||||||.      ++.||+|+|||+++++|.|||||++.+... .+.++
T Consensus        65 ----------~~~~~~v~~~~~~~~l~~~~~i~iPIn~n~~~~~~~~HW~L~vi~~~~~~i~~~DSl~~~n~~~-~~~l~  133 (212)
T 2bkr_A           65 ----------TSNPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSRSNSVH-AKQVA  133 (212)
T ss_dssp             ----------CCCHHHHHHHHGGGTGGGCSEEEEEEECCCSSSSBCCCEEEEEEEGGGTEEEEECSSTTTTHHH-HHHHH
T ss_pred             ----------CCCHHHHHHHhcccccccCCEEEEEEecCCCCCCCCCCeEEEEEEecCCeEEEEeCCCCCCHHH-HHHHH
Confidence                      2357889999999999999999999996      479999999999999999999999987543 34445


Q ss_pred             HHHHHHhhhhhccceeeecCCCCCCC
Q 036268          222 KLLEVIFPRWLEYVGFYNIRPELRSA  247 (249)
Q Consensus       222 ~yLak~l~~il~~~s~Y~i~~~~~s~  247 (249)
                      +.|...|........ +....-|+|.
T Consensus       134 ~~l~~~l~~~~~~~~-~~~~~~PqQ~  158 (212)
T 2bkr_A          134 EKLEAFLGRKGDKLA-FVEEKAPAQQ  158 (212)
T ss_dssp             HHHHHHHSCTTCCCC-EEECCCCCCS
T ss_pred             HHHHHHhCCccccce-EeECCCCCCC
Confidence            555555544322111 2344556664

>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A

Probab=99.75  E-value=7.6e-19  Score=150.01  Aligned_cols=126  Identities=26%  Similarity=0.426  Sum_probs=90.4

Q ss_pred             eeecccccceeeeeeeh--hhccCcccchhhhhhcccCccccccceeeeecCCCCCCchhhHHHhhhhhhcCCCccccce
Q 036268           75 VQWKPMASSRINFAEVY--SFFNDESRIGDVLQTLEPNSKESSKKYWLTVKDYMPSIPDWVHKVFLNQLWNNGDCAVDSL  152 (249)
Q Consensus        75 v~~~~~~~~~~n~~~~~--~~f~~~~r~~~v~q~Lq~~~k~~~kr~~lT~~d~~~~~p~wv~~~F~nq~~~~g~c~~~~l  152 (249)
                      ++-+++...+-.+.++.  .|.||+. |+++++.|++.....             ..|. +  +|||+||...      +
T Consensus        39 ~~~~~~~l~~~Dl~~L~~~~wLND~i-I~fy~~~L~~~~~~~-------------~~~~-~--~~f~sff~~~------l   95 (238)
T 2xph_A           39 SEAFRLTITRKDIQTLNHLNWLNDEI-INFYMNMLMERSKEK-------------GLPS-V--HAFNTFFFTK------L   95 (238)
T ss_dssp             EEETTEEECHHHHHTTSTTCCCCHHH-HHHHHHHHHHHTTST-------------TSCC-E--EECCTTTTHH------H
T ss_pred             ecCCCcEEeHHHHhhcCCCCccCHHH-HHHHHHHHHHhhhhc-------------CCCc-e--eeeecHHHHH------h
Confidence            45567777777777776  6888877 788877776542110             1111 1  1333333211      1


Q ss_pred             eccccccccccccccccccCceeecEEEEeeeCCCCeEEEEEEEcCCCeEEEEeCCCCCCchhHHHHHHHHHHHHhh
Q 036268          153 VFEDHLNNYLCGRQHTMSKSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSLLTFCDDKRYKLKFKLLEVIFP  229 (249)
Q Consensus       153 ~~~d~l~GY~~VkRWTkkVDIFskDlILIPInv~n~HW~LaVId~r~K~I~YYDSLgg~n~~~~~~li~~yLak~l~  229 (249)
                          ...||.+|+|||+++|||++|+|+||||.+ .||+|+|||+++++|.|||||++.+.. ..+.+.++|.....
T Consensus        96 ----~~~~~~~v~~w~~~~~l~~~~~i~iPin~~-~HW~L~vi~~~~~~i~~~DSl~~~~~~-~~~~l~~~L~~e~~  166 (238)
T 2xph_A           96 ----KTAGYQAVKRWTKKVDVFSVDILLVPIHLG-VHWCLAVVDFRKKNITYYDSMGGINNE-ACRILLQYLKQESI  166 (238)
T ss_dssp             ----HTTCHHHHTTTTTTCCGGGSSEEEEEEEET-TEEEEEEEETTTTEEEEECTTCCCCHH-HHHHHHHHHHHHHH
T ss_pred             ----hhcccHHHHHHhccCCcccCCEEEEcccCC-CceEEEEEEcccceEEEeecccCCCHH-HHHHHHHHHHHHHH
Confidence                124899999999999999999999999996 999999999999999999999998754 45566777766544

>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A

Probab=99.74  E-value=1.9e-18  Score=146.24  Aligned_cols=129  Identities=17%  Similarity=0.277  Sum_probs=90.9

Q ss_pred             cceeeecccccceeeeeeeh--hhccCcccchhhhhhcccCccccccceeeeecCCCCCCchhhHHHhhhhhhcCCCccc
Q 036268           72 PRIVQWKPMASSRINFAEVY--SFFNDESRIGDVLQTLEPNSKESSKKYWLTVKDYMPSIPDWVHKVFLNQLWNNGDCAV  149 (249)
Q Consensus        72 ~riv~~~~~~~~~~n~~~~~--~~f~~~~r~~~v~q~Lq~~~k~~~kr~~lT~~d~~~~~p~wv~~~F~nq~~~~g~c~~  149 (249)
                      .-++.-+++...+-.+.++.  .|.||+. |+++++.|++.....         . .+.+ ..+++||+.++.       
T Consensus        24 ~~~~~~~~~~l~~~Dl~~L~~~~wLND~i-I~fy~~~L~~~~~~~---------~-~~~~-~~f~s~f~~~l~-------   84 (226)
T 1th0_A           24 EILSSAFKLRITRGDIQTLKNYHWLNDEV-INFYMNLLVERNKKQ---------G-YPAL-HVFSTFFYPKLK-------   84 (226)
T ss_dssp             CEEEEETTEEEEHHHHGGGSTTCCCCHHH-HHHHHHHHHHHHHHH---------T-CCCE-EECCTTHHHHHH-------
T ss_pred             ceeeccCCeEEEHHHHhhcCCCCccChHH-HHHHHHHHHHhhhhc---------c-CCcE-EEEeHHHHHHhh-------
Confidence            34566777777777777776  6777777 777777775432100         0 0111 111223333221       


Q ss_pred             cceeccccccccccccccccccCceeecEEEEeeeCCCCeEEEEEEEcCCCeEEEEeCCCCCCchhHHHHHHHHHHHHhh
Q 036268          150 DSLVFEDHLNNYLCGRQHTMSKSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSLLTFCDDKRYKLKFKLLEVIFP  229 (249)
Q Consensus       150 ~~l~~~d~l~GY~~VkRWTkkVDIFskDlILIPInv~n~HW~LaVId~r~K~I~YYDSLgg~n~~~~~~li~~yLak~l~  229 (249)
                              ..||.+|+|||+++++|++|+|+||||.+ .||+|+|||+++++|.|||||++.+. ...+.+.+||.....
T Consensus        85 --------~~~~~~v~~w~~~~~l~~~~~i~iPin~~-~HW~l~vi~~~~~~i~~~DSl~~~~~-~~~~~l~~~l~~e~~  154 (226)
T 1th0_A           85 --------SGGYQAVKRWTKGVNLFEQEIILVPIHRK-VHWSLVVIDLRKKCLKYLDSMGQKGH-RICEILLQYLQDESK  154 (226)
T ss_dssp             --------HHTGGGTGGGGTTCCGGGSSEEEEEEEET-TEEEEEEEETTTTEEEEECTTCCCCH-HHHHHHHHHHHHHHH
T ss_pred             --------hcccHHHHHHhhcCCcccCCEEEEeEEeC-cEEEEEEEEcCCCceEEEcCCCCCch-HHHHHHHHHHHHHHH
Confidence                    24799999999999999999999999996 99999999999999999999999875 455666677766543

>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A

Probab=99.61  E-value=3.8e-16  Score=130.00  Aligned_cols=98  Identities=15%  Similarity=0.296  Sum_probs=68.5

Q ss_pred             hhccCcccchhhhhhcccCccccccceeeeecCCCCCCchhhHHHhhhhhhcCCCccccceecccccccccccccccccc
Q 036268           92 SFFNDESRIGDVLQTLEPNSKESSKKYWLTVKDYMPSIPDWVHKVFLNQLWNNGDCAVDSLVFEDHLNNYLCGRQHTMSK  171 (249)
Q Consensus        92 ~~f~~~~r~~~v~q~Lq~~~k~~~kr~~lT~~d~~~~~p~wv~~~F~nq~~~~g~c~~~~l~~~d~l~GY~~VkRWTkkV  171 (249)
                      +|+||+. |+++++.|++......++      +   .+ +.++. ++.++....+           ..+|..++||++..
T Consensus         3 ~WLND~i-I~fy~~~L~~~~~~~~~~------~---~v-~f~~p-~~~~~l~~~~-----------~~~~~~~~~~~~~~   59 (186)
T 2oix_A            3 SWLLDGH-LRAYTDDLARRLRGEPNA------H---LL-HFADS-QVVTMLSSAD-----------PDQQARAQRLLAGD   59 (186)
T ss_dssp             CCCCHHH-HHHHHHHHHHHTTTSTTG------G---GE-EECCH-HHHHHTTCSS-----------HHHHHHHHHHHHST
T ss_pred             CCcChHH-HHHHHHHHHHHhhhccCc------c---eE-EEECH-HHHHHHHhCC-----------HHHHHHHHHHcccc
Confidence            4899999 999999998764221110      0   00 11111 1112222221           13577888888877


Q ss_pred             CceeecEEEEeeeCCCCeEEEEEEEcCCCeE---EEEeCCCCCCch
Q 036268          172 SMTDVDMLLIPVNLDGAHWVVARVDFRKNKV---WIYDSLLTFCDD  214 (249)
Q Consensus       172 DIFskDlILIPInv~n~HW~LaVId~r~K~I---~YYDSLgg~n~~  214 (249)
                      ++  +|+||||||.+++||+|+|||.++++|   .||||||+.+..
T Consensus        60 ~~--~~~i~iPin~~~~HWsLlvi~~~~~~~~~~~~~DSl~~~~~~  103 (186)
T 2oix_A           60 DI--PPIVFLPINQPNAHWSLLVVDRRNKDAVAAYHYDSMAQKDPQ  103 (186)
T ss_dssp             TS--CSEEEEEEEETTTEEEEEEEECSSTTSCEEEEECCCSSCCHH
T ss_pred             cc--cCEEEEEEeCCCCccEEEEEECCCCeeeeeEEEcCCCCCCHH
Confidence            76  999999999977999999999999999   999999996543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	249
d1euva_	221	Ulp1 protease C-terminal domain {Baker's yeast (Sa	99.67
d1th0a_	226	Sentrin-specific protease 2, SENP2 {Human (Homo sa	99.55
d2iy1a1	225	Sentrin-specific protease 1 {Human (Homo sapiens)	99.53
d2bkra1	212	Sentrin-specific protease 8, SENP8 {Human (Homo sa	99.5

>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Ulp1 protease C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=5.5e-17  Score=134.33  Aligned_cols=115  Identities=17%  Similarity=0.295  Sum_probs=80.6

Q ss_pred             ccceeeeecCCCCCCc-hhhHHHhhhhhh----c-CCCccccceecc--ccccccccccccc--cccCceeecEEEEeee
Q 036268          115 SKKYWLTVKDYMPSIP-DWVHKVFLNQLW----N-NGDCAVDSLVFE--DHLNNYLCGRQHT--MSKSMTDVDMLLIPVN  184 (249)
Q Consensus       115 ~kr~~lT~~d~~~~~p-~wv~~~F~nq~~----~-~g~c~~~~l~~~--d~l~GY~~VkRWT--kkVDIFskDlILIPIn  184 (249)
                      +.+..||.+|+..+-| +||++-..|.++    . ....+.+..++.  -...||.+++||+  ++++++++|+|+||||
T Consensus        30 ~~~~~it~~Dl~~L~~~~WLnD~iIn~y~~~l~~~~~~~~~~~s~f~~~l~~~~~~~~~~w~~~~~~~~~~~~~i~iPin  109 (221)
T d1euva_          30 RDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTPNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPIN  109 (221)
T ss_dssp             ETTEEEEHHHHGGGSTTCCCBHHHHHHHHHHHHHHSTTEEECCTHHHHHHHHHTGGGTTTTTGGGTSCGGGCSEEEEEEE
T ss_pred             cCCcEEeHHHHhhcCCCcccCcHHHHHHHHHHHhcCCCeEEeccHHHHhHhhhchHHHHHHHHhcccchhhcceeEeeEe
Confidence            4556788888877765 688743333332    2 222222222111  1236899999999  5789999999999999


Q ss_pred             CCCCeEEEEEEEcCCCeEEEEeCCCCCCchhHHHHHHHHHHHHhhh
Q 036268          185 LDGAHWVVARVDFRKNKVWIYDSLLTFCDDKRYKLKFKLLEVIFPR  230 (249)
Q Consensus       185 v~n~HW~LaVId~r~K~I~YYDSLgg~n~~~~~~li~~yLak~l~~  230 (249)
                      .++.||+|++||+++++|.+||||++.+.... ..+++.|.+.+..
T Consensus       110 ~~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~-~~i~~~l~~~l~~  154 (221)
T d1euva_         110 LNQSHWALGIIDLKKKTIGYVDSLSNGPNAMS-FAILTDLQKYVME  154 (221)
T ss_dssp             ETTTEEEEEEEETTTTEEEEECSSCCSCCHHH-HHHHHHHHHHHHH
T ss_pred             cccceEEEEEeeccccceeeeccccCCCcHHH-HHHHHHHHHHHHH
Confidence            98899999999999999999999999876543 3345555555433

>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=5.9e-16  Score=125.72  Aligned_cols=130  Identities=16%  Similarity=0.245  Sum_probs=96.1

Q ss_pred             ceeeecccccceeeeeeeh--hhccCcccchhhhhhcccCccccccceeeeecCCCCCCchhhHHHhhhhhhcCCCcccc
Q 036268           73 RIVQWKPMASSRINFAEVY--SFFNDESRIGDVLQTLEPNSKESSKKYWLTVKDYMPSIPDWVHKVFLNQLWNNGDCAVD  150 (249)
Q Consensus        73 riv~~~~~~~~~~n~~~~~--~~f~~~~r~~~v~q~Lq~~~k~~~kr~~lT~~d~~~~~p~wv~~~F~nq~~~~g~c~~~  150 (249)
                      -||+.+++..++=.+..+.  +|+||.. |+++++.|+..++.....          .+ ..++++|+..+         
T Consensus        25 ~~~~~~~~~i~~~Dl~~L~~~~WLnD~i-I~~y~~~l~~~~~~~~~~----------~~-~~~~~~f~~~l---------   83 (226)
T d1th0a_          25 ILSSAFKLRITRGDIQTLKNYHWLNDEV-INFYMNLLVERNKKQGYP----------AL-HVFSTFFYPKL---------   83 (226)
T ss_dssp             EEEEETTEEEEHHHHGGGSTTCCCCHHH-HHHHHHHHHHHHHHHTCC----------CE-EECCTTHHHHH---------
T ss_pred             eeeecCCceeEHHHHHhcCCCcccccHH-HHHHHHHHHHhhhhccCC----------ce-EEecHHHHHHH---------
Confidence            4678888888888887777  6999998 889988887654322100          00 01112233322         


Q ss_pred             ceeccccccccccccccccccCceeecEEEEeeeCCCCeEEEEEEEcCCCeEEEEeCCCCCCchhHHHHHHHHHHHHhhh
Q 036268          151 SLVFEDHLNNYLCGRQHTMSKSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSLLTFCDDKRYKLKFKLLEVIFPR  230 (249)
Q Consensus       151 ~l~~~d~l~GY~~VkRWTkkVDIFskDlILIPInv~n~HW~LaVId~r~K~I~YYDSLgg~n~~~~~~li~~yLak~l~~  230 (249)
                            ...+|..++||+++++++++|+|++|||.+ .||+|++||++++++.+|||+++.+.. ....+.++|...+..
T Consensus        84 ------~~~~~~~~~~~~~~~~l~~~~~i~iPin~~-~HW~L~vi~~~~~~i~~~DSl~~~~~~-~~~~i~~~l~~~~~~  155 (226)
T d1th0a_          84 ------KSGGYQAVKRWTKGVNLFEQEIILVPIHRK-VHWSLVVIDLRKKCLKYLDSMGQKGHR-ICEILLQYLQDESKT  155 (226)
T ss_dssp             ------HHHTGGGTGGGGTTCCGGGSSEEEEEEEET-TEEEEEEEETTTTEEEEECTTCCCCHH-HHHHHHHHHHHHHHH
T ss_pred             ------hhccHHHHHHHHhccCcccCCEEEEeEEcC-CceEEEEEEeccceEEEeccccCCChH-HHHHHHHHHHHHHHH
Confidence                  124789999999999999999999999986 999999999999999999999988654 455666666665554


Q ss_pred             h
Q 036268          231 W  231 (249)
Q Consensus       231 i  231 (249)
                      .
T Consensus       156 ~  156 (226)
T d1th0a_         156 K  156 (226)
T ss_dssp             H
T ss_pred             h
Confidence            3

>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.1e-14  Score=118.06  Aligned_cols=71  Identities=28%  Similarity=0.500  Sum_probs=60.4

Q ss_pred             ccccccccccccccCceeecEEEEeeeCCCCeEEEEEEEcCCCeEEEEeCCCCCCchhHHHHHHHHHHHHhhh
Q 036268          158 LNNYLCGRQHTMSKSMTDVDMLLIPVNLDGAHWVVARVDFRKNKVWIYDSLLTFCDDKRYKLKFKLLEVIFPR  230 (249)
Q Consensus       158 l~GY~~VkRWTkkVDIFskDlILIPInv~n~HW~LaVId~r~K~I~YYDSLgg~n~~~~~~li~~yLak~l~~  230 (249)
                      ..+|..+++|+++++++++|.|+||||.+ .||+|++||+++++|.+||||++.+.. ....+.++|+..+..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~I~iPin~~-~HW~l~vi~~~~~~i~~~DSl~~~~~~-~~~~i~~~l~~~~~~  155 (225)
T d2iy1a1          85 TAGYQAVKRWTKKVDVFSVDILLVPIHLG-VHWCLAVVDFRKKNITYYDSMGGINNE-ACRILLQYLKQESID  155 (225)
T ss_dssp             HSCGGGTGGGGTTCCGGGSSEEEEEEECS-SCEEEEEEETTTTEEEEECTTCCCCHH-HHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHhccccccCCEEEEEEeCC-CCEEEEEEEeccceEEEEecCCCCchH-HHHHHHHHHHHHHHH
Confidence            35889999999999999999999999986 999999999999999999999988653 455666666655443

>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 8, SENP8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=6.8e-15  Score=118.91  Aligned_cols=69  Identities=19%  Similarity=0.189  Sum_probs=56.7

Q ss_pred             cccccccccccccCceeecEEEEeeeCC------CCeEEEEEEEcCCCeEEEEeCCCCCCchhHHHHHHHHHHHHh
Q 036268          159 NNYLCGRQHTMSKSMTDVDMLLIPVNLD------GAHWVVARVDFRKNKVWIYDSLLTFCDDKRYKLKFKLLEVIF  228 (249)
Q Consensus       159 ~GY~~VkRWTkkVDIFskDlILIPInv~------n~HW~LaVId~r~K~I~YYDSLgg~n~~~~~~li~~yLak~l  228 (249)
                      .++..+++|+++++++++|+|+||||..      +.||+|++||.++++|.||||+++.+... .+.+++.|...+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~ifiPIn~~~~~~~~g~HW~l~vi~~~~~~i~~~DSl~~~~~~~-~~~~~~~l~~~~  140 (212)
T d2bkra1          66 SNPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSRSNSVH-AKQVAEKLEAFL  140 (212)
T ss_dssp             CCHHHHHHHHGGGTGGGCSEEEEEEECCCSSSSBCCCEEEEEEEGGGTEEEEECSSTTTTHHH-HHHHHHHHHHHH
T ss_pred             ccHHHHHHHHhccChhhccEEEEecccccccccCcceeeeeeeccccceEEEecCCCcCCHHH-HHHHHHHHHHHh
Confidence            5788999999999999999999999954      58999999999999999999999987543 333444444433