Citrus Sinensis ID: 036287
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 488 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FIF7 | 544 | Putative pentatricopeptid | yes | no | 0.803 | 0.720 | 0.643 | 1e-157 | |
| Q9SZT8 | 632 | Pentatricopeptide repeat- | no | no | 0.997 | 0.770 | 0.479 | 1e-139 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 0.995 | 0.658 | 0.478 | 1e-130 | |
| Q9FJY7 | 620 | Pentatricopeptide repeat- | no | no | 0.997 | 0.785 | 0.464 | 1e-128 | |
| Q9FI80 | 646 | Pentatricopeptide repeat- | no | no | 1.0 | 0.755 | 0.443 | 1e-128 | |
| Q9FG16 | 622 | Pentatricopeptide repeat- | no | no | 0.995 | 0.781 | 0.448 | 1e-128 | |
| Q683I9 | 573 | Pentatricopeptide repeat- | no | no | 0.995 | 0.848 | 0.421 | 1e-121 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 1.0 | 0.658 | 0.425 | 1e-119 | |
| Q9FND7 | 612 | Putative pentatricopeptid | no | no | 0.995 | 0.794 | 0.427 | 1e-119 | |
| Q9SUH6 | 792 | Pentatricopeptide repeat- | no | no | 0.926 | 0.570 | 0.429 | 1e-119 |
| >sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 556 bits (1433), Expect = e-157, Method: Compositional matrix adjust.
Identities = 253/393 (64%), Positives = 325/393 (82%), Gaps = 1/393 (0%)
Query: 3 REIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVE 62
REIH QVLKLG S+RS LK++E+YGK GE +A ++FDEMP+ D VA+TVMINCY E
Sbjct: 143 REIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPD-RDHVAATVMINCYSE 201
Query: 63 HGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCV 122
G ++ A E+F VK+KDTVCWTAMIDGLVRN EM +AL+LFREMQ +NV NE T VCV
Sbjct: 202 CGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCV 261
Query: 123 LSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDV 182
LSACS LGALELGRW+HS++ R++L++ VG ALINMYSRCGDI++A +VF M+++DV
Sbjct: 262 LSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDV 321
Query: 183 TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQS 242
+YN++I+GLAMHG S+EA+ FR+M+N+G RP +VT V +LNACSHGGL+D+G E+F S
Sbjct: 322 ISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNS 381
Query: 243 MTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQ 302
M R + +EPQIEHYGCIVDLL RVGR EEAY FI N+ I PDHIMLG+LLSACKIHG ++
Sbjct: 382 MKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNME 441
Query: 303 LGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIEVN 362
LGE+IAKRL + + DSGTYVLLSN YASSGKWKE+ +IR M+++G++KEPGCS+IEV+
Sbjct: 442 LGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRDSGIEKEPGCSTIEVD 501
Query: 363 NEIHEFILGDIRHPQREQIYKKMQELKQIVKLE 395
N+IHEF++GDI HP +E IY+++QEL +I++ +
Sbjct: 502 NQIHEFLVGDIAHPHKEAIYQRLQELNRILRFK 534
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 497 bits (1279), Expect = e-139, Method: Compositional matrix adjust.
Identities = 235/490 (47%), Positives = 338/490 (68%), Gaps = 3/490 (0%)
Query: 1 EGREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY 60
G+ IH VLK GL + LV++Y K G+ A ++FD MPE +V+ST MI CY
Sbjct: 144 SGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPE-RSLVSSTAMITCY 202
Query: 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRD-NVRPNEVTI 119
+ G VE A +F + +D V W MIDG ++G AL LF+++ + +P+E+T+
Sbjct: 203 AKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITV 262
Query: 120 VCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE 179
V LSACSQ+GALE GRWIH ++ RI LN V LI+MYS+CG +++A+ VF +
Sbjct: 263 VAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPR 322
Query: 180 RDVTTYNSLIAGLAMHGRSIEAVEMFREMIN-QGIRPTKVTFVGVLNACSHGGLVDLGFE 238
+D+ +N++IAG AMHG S +A+ +F EM G++PT +TF+G L AC+H GLV+ G
Sbjct: 323 KDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIR 382
Query: 239 IFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIH 298
IF+SM ++YGI+P+IEHYGC+V LL R G+ + AY+ I NM + D ++ S+L +CK+H
Sbjct: 383 IFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLH 442
Query: 299 GKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSS 358
G LG++IA+ L+ +SG YVLLSN YAS G ++ ++R MKE G+ KEPG S+
Sbjct: 443 GDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGIST 502
Query: 359 IEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALA 418
IE+ N++HEF GD H + ++IY ++++ + +K GY P+T VL D+E+ EKE +L
Sbjct: 503 IEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQ 562
Query: 419 IHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFE 478
+HSERLAI YGLISTKP + +++ KNLRVC+DCH++ KLI+ IT RKI++RDRNRFHHF
Sbjct: 563 VHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFT 622
Query: 479 NGTCSCGDYW 488
+G+CSCGD+W
Sbjct: 623 DGSCSCGDFW 632
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 466 bits (1199), Expect = e-130, Method: Compositional matrix adjust.
Identities = 234/489 (47%), Positives = 319/489 (65%), Gaps = 3/489 (0%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
GR++ + + + N + ++++Y KCG +DA +LFD M E D V T M++ Y
Sbjct: 251 GRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEE-KDNVTWTTMLDGYA 309
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQ-RDNVRPNEVTIV 120
E A EV + + KD V W A+I +NG+ AL +F E+Q + N++ N++T+V
Sbjct: 310 ISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLV 369
Query: 121 CVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER 180
LSAC+Q+GALELGRWIHSY+ KH I +N V ALI+MYS+CGD++K+ +VF +++R
Sbjct: 370 STLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKR 429
Query: 181 DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIF 240
DV ++++I GLAMHG EAV+MF +M ++P VTF V ACSH GLVD +F
Sbjct: 430 DVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLF 489
Query: 241 QSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGK 300
M +YGI P+ +HY CIVD+L R G E+A FI M I P + G+LL ACKIH
Sbjct: 490 HQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHAN 549
Query: 301 LQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIE 360
L L E RLL+ + G +VLLSN YA GKW+ ++R M+ G++KEPGCSSIE
Sbjct: 550 LNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIE 609
Query: 361 VNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWE-KEWALAI 419
++ IHEF+ GD HP E++Y K+ E+ + +K GY P VL IE+ E KE +L +
Sbjct: 610 IDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNL 669
Query: 420 HSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFEN 479
HSE+LAICYGLIST+ IRV+KNLRVC DCHS+ KLI+ + R+IIVRDR RFHHF N
Sbjct: 670 HSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRN 729
Query: 480 GTCSCGDYW 488
G CSC D+W
Sbjct: 730 GQCSCNDFW 738
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 459 bits (1182), Expect = e-128, Method: Compositional matrix adjust.
Identities = 227/489 (46%), Positives = 318/489 (65%), Gaps = 2/489 (0%)
Query: 1 EGREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY 60
E +IH Q+ KLG ++ L+ Y G FK A LFD +PE +DV ++V I Y
Sbjct: 133 ETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSV-IKGY 191
Query: 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV 120
V+ G ++ A +F ++ K+ + WT MI G V+ AL LF EMQ +V P+ V++
Sbjct: 192 VKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLA 251
Query: 121 CVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER 180
LSAC+QLGALE G+WIHSY+ K RI ++ ++G LI+MY++CG++++AL+VF+ +K++
Sbjct: 252 NALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKK 311
Query: 181 DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIF 240
V + +LI+G A HG EA+ F EM GI+P +TF VL ACS+ GLV+ G IF
Sbjct: 312 SVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIF 371
Query: 241 QSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGK 300
SM RDY ++P IEHYGCIVDLL R G +EA FI M + P+ ++ G+LL AC+IH
Sbjct: 372 YSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKN 431
Query: 301 LQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIE 360
++LGE+I + L+ G YV +N +A KW +A + R MKE GV K PGCS+I
Sbjct: 432 IELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTIS 491
Query: 361 VNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHD-IEDWEKEWALAI 419
+ HEF+ GD HP+ E+I K + +++ ++ GY P E +L D ++D E+E +
Sbjct: 492 LEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQ 551
Query: 420 HSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFEN 479
HSE+LAI YGLI TKP T IR++KNLRVC DCH + KLI+ I KR I++RDR RFHHF +
Sbjct: 552 HSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRD 611
Query: 480 GTCSCGDYW 488
G CSCGDYW
Sbjct: 612 GKCSCGDYW 620
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 459 bits (1181), Expect = e-128, Method: Compositional matrix adjust.
Identities = 222/501 (44%), Positives = 324/501 (64%), Gaps = 13/501 (2%)
Query: 1 EGREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLF-------------DEMPEC 47
EG++IHG LK G + LV +Y CG KDA LF D
Sbjct: 146 EGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRD 205
Query: 48 NDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREM 107
++V VMI+ Y+ G + A +F +++ + V W MI G NG A+++FREM
Sbjct: 206 GEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREM 265
Query: 108 QRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDI 167
++ ++RPN VT+V VL A S+LG+LELG W+H Y I ++ ++G ALI+MYS+CG I
Sbjct: 266 KKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGII 325
Query: 168 DKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNAC 227
+KA+ VFE + +V T++++I G A+HG++ +A++ F +M G+RP+ V ++ +L AC
Sbjct: 326 EKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTAC 385
Query: 228 SHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIM 287
SHGGLV+ G F M G+EP+IEHYGC+VDLL R G +EA +FI NM I PD ++
Sbjct: 386 SHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVI 445
Query: 288 LGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347
+LL AC++ G +++G+++A L+D DSG YV LSN YAS G W E ++R +MKE
Sbjct: 446 WKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKE 505
Query: 348 AGVQKEPGCSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHD 407
++K+PGCS I+++ +HEF++ D HP+ ++I + E+ ++L GY P T VL +
Sbjct: 506 KDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLN 565
Query: 408 IEDWEKEWALAIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKII 467
+E+ +KE L HSE++A +GLIST P IR+VKNLR+C DCHS IKLI+ + KRKI
Sbjct: 566 LEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKIT 625
Query: 468 VRDRNRFHHFENGTCSCGDYW 488
VRDR RFHHF++G+CSC DYW
Sbjct: 626 VRDRKRFHHFQDGSCSCMDYW 646
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 457 bits (1175), Expect = e-128, Method: Compositional matrix adjust.
Identities = 219/488 (44%), Positives = 329/488 (67%), Gaps = 2/488 (0%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
G + H Q+++ G +++ LV +Y CG A ++F +M DVV+ T M+ Y
Sbjct: 136 GEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMG-FRDVVSWTSMVAGYC 194
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVC 121
+ G+VENA E+F + ++ W+ MI+G +N +A+DLF M+R+ V NE +V
Sbjct: 195 KCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVS 254
Query: 122 VLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD 181
V+S+C+ LGALE G + Y+ K + +N I+G AL++M+ RCGDI+KA+ VFE + E D
Sbjct: 255 VISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETD 314
Query: 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQ 241
+++S+I GLA+HG + +A+ F +MI+ G P VTF VL+ACSHGGLV+ G EI++
Sbjct: 315 SLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYE 374
Query: 242 SMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKL 301
+M +D+GIEP++EHYGCIVD+L R G+ EA +FI M + P+ +LG+LL ACKI+
Sbjct: 375 NMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNT 434
Query: 302 QLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIEV 361
++ E++ L+ + SG YVLLSN YA +G+W + +R MKE V+K PG S IE+
Sbjct: 435 EVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEI 494
Query: 362 NNEIHEFILG-DIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAIH 420
+ +I++F +G D +HP+ +I +K +E+ ++L GY +T D+++ EKE ++ +H
Sbjct: 495 DGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESSIHMH 554
Query: 421 SERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFENG 480
SE+LAI YG++ TKP TTIR+VKNLRVC DCH++ KLI+ + R++IVRDRNRFHHF NG
Sbjct: 555 SEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNG 614
Query: 481 TCSCGDYW 488
CSC DYW
Sbjct: 615 VCSCRDYW 622
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 437 bits (1123), Expect = e-121, Method: Compositional matrix adjust.
Identities = 208/494 (42%), Positives = 324/494 (65%), Gaps = 8/494 (1%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
G+ H Q+L GL + R L+ +Y CG+ + A ++FD+ D+ A ++N Y
Sbjct: 81 GQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDD-SGSKDLPAWNSVVNAYA 139
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDN-----VRPNE 116
+ GL+++A ++F + ++ + W+ +I+G V G+ ALDLFREMQ VRPNE
Sbjct: 140 KAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNE 199
Query: 117 VTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEE 176
T+ VLSAC +LGALE G+W+H+Y+ K+ ++++ ++G ALI+MY++CG +++A +VF
Sbjct: 200 FTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNA 259
Query: 177 M-KERDVTTYNSLIAGLAMHGRSIEAVEMFREMI-NQGIRPTKVTFVGVLNACSHGGLVD 234
+ ++DV Y+++I LAM+G + E ++F EM + I P VTFVG+L AC H GL++
Sbjct: 260 LGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLIN 319
Query: 235 LGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSA 294
G F+ M ++GI P I+HYGC+VDL R G +EA FI +M + PD ++ GSLLS
Sbjct: 320 EGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSG 379
Query: 295 CKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEP 354
++ G ++ E KRL++ +SG YVLLSN YA +G+W E IR +M+ G+ K P
Sbjct: 380 SRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVP 439
Query: 355 GCSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKE 414
GCS +EV +HEF++GD + E+IY + E+ Q ++ GY T+ VL D+ + +KE
Sbjct: 440 GCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKE 499
Query: 415 WALAIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRF 474
AL+ HSE+LAI + L+ T+P T +R++KNLR+C DCH ++K+I+ + R+I+VRD NRF
Sbjct: 500 IALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRF 559
Query: 475 HHFENGTCSCGDYW 488
HHF +G+CSC D+W
Sbjct: 560 HHFRDGSCSCRDFW 573
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 429 bits (1103), Expect = e-119, Method: Compositional matrix adjust.
Identities = 210/493 (42%), Positives = 322/493 (65%), Gaps = 5/493 (1%)
Query: 1 EGREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQL---FDEMPECNDVVASTVMI 57
E E+ ++K +R + ST + +V + G + Q+ D+ +++ +I
Sbjct: 249 EALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALI 308
Query: 58 NCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEV 117
+ Y + G +E A +F R+ KD + W +I G AL LF+EM R PN+V
Sbjct: 309 DLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDV 368
Query: 118 TIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHI--VGGALINMYSRCGDIDKALQVFE 175
T++ +L AC+ LGA+++GRWIH Y+ K + + + +LI+MY++CGDI+ A QVF
Sbjct: 369 TMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFN 428
Query: 176 EMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDL 235
+ + ++++N++I G AMHGR+ + ++F M GI+P +TFVG+L+ACSH G++DL
Sbjct: 429 SILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDL 488
Query: 236 GFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSAC 295
G IF++MT+DY + P++EHYGC++DLL G +EA + I M++ PD ++ SLL AC
Sbjct: 489 GRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKAC 548
Query: 296 KIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPG 355
K+HG ++LGE A+ L+ + G+YVLLSN YAS+G+W E + RA + + G++K PG
Sbjct: 549 KMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPG 608
Query: 356 CSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEW 415
CSSIE+++ +HEFI+GD HP+ +IY ++E++ +++ G+ P T VL ++E+ KE
Sbjct: 609 CSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEG 668
Query: 416 ALAIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFH 475
AL HSE+LAI +GLISTKP T + +VKNLRVC +CH KLI+ I KR+II RDR RFH
Sbjct: 669 ALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFH 728
Query: 476 HFENGTCSCGDYW 488
HF +G CSC DYW
Sbjct: 729 HFRDGVCSCNDYW 741
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 429 bits (1103), Expect = e-119, Method: Compositional matrix adjust.
Identities = 208/487 (42%), Positives = 309/487 (63%), Gaps = 1/487 (0%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
G ++HG ++ G ++ + L+ LY + G ++F+ +P C D V T M+
Sbjct: 127 GLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIP-CPDFVCRTAMVTACA 185
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVC 121
G V A ++F + +D + W AMI G + GE AL++F MQ + V+ N V ++
Sbjct: 186 RCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMIS 245
Query: 122 VLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD 181
VLSAC+QLGAL+ GRW HSY+ +++I + + L+++Y++CGD++KA++VF M+E++
Sbjct: 246 VLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKN 305
Query: 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQ 241
V T++S + GLAM+G + +E+F M G+ P VTFV VL CS G VD G F
Sbjct: 306 VYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFD 365
Query: 242 SMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKL 301
SM ++GIEPQ+EHYGC+VDL +R GR E+A I M + P + SLL A +++ L
Sbjct: 366 SMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNL 425
Query: 302 QLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIEV 361
+LG +K++L+ +A+ G YVLLSN YA S W +R MK GV+K+PGCS +EV
Sbjct: 426 ELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEV 485
Query: 362 NNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAIHS 421
N E+HEF +GD HP+ QI +++ + ++L GY T V+ DI++ EKE AL +HS
Sbjct: 486 NGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHS 545
Query: 422 ERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFENGT 481
E+ AI +G++S K IR+VKNLRVC DCH + +I+ I R+IIVRDRNRFHHF++G
Sbjct: 546 EKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGH 605
Query: 482 CSCGDYW 488
CSC +W
Sbjct: 606 CSCNGFW 612
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 429 bits (1103), Expect = e-119, Method: Compositional matrix adjust.
Identities = 208/484 (42%), Positives = 293/484 (60%), Gaps = 32/484 (6%)
Query: 5 IHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHG 64
IHG LK S+ S L +Y K E + A +LFDE PE
Sbjct: 341 IHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPE------------------ 382
Query: 65 LVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLS 124
K W AMI G +NG A+ LFREMQ+ PN VTI C+LS
Sbjct: 383 --------------KSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILS 428
Query: 125 ACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTT 184
AC+QLGAL LG+W+H + + + V ALI MY++CG I +A ++F+ M +++ T
Sbjct: 429 ACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVT 488
Query: 185 YNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMT 244
+N++I+G +HG+ EA+ +F EM+N GI PT VTF+ VL ACSH GLV G EIF SM
Sbjct: 489 WNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMI 548
Query: 245 RDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLG 304
YG EP ++HY C+VD+L R G + A FI M I P + +LL AC+IH L
Sbjct: 549 HRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLA 608
Query: 305 EQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIEVNNE 364
++++L + + G +VLLSN +++ + +A +R K+ + K PG + IE+
Sbjct: 609 RTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGET 668
Query: 365 IHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAIHSERL 424
H F GD HPQ ++IY+K+++L+ ++ GY P TE+ LHD+E+ E+E + +HSERL
Sbjct: 669 PHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERL 728
Query: 425 AICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFENGTCSC 484
AI +GLI+T+P T IR++KNLRVC DCH++ KLI+ IT+R I+VRD NRFHHF++G CSC
Sbjct: 729 AIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSC 788
Query: 485 GDYW 488
GDYW
Sbjct: 789 GDYW 792
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 488 | ||||||
| 224069701 | 621 | predicted protein [Populus trichocarpa] | 0.971 | 0.763 | 0.747 | 0.0 | |
| 359495698 | 650 | PREDICTED: putative pentatricopeptide re | 0.995 | 0.747 | 0.739 | 0.0 | |
| 359495599 | 650 | PREDICTED: putative pentatricopeptide re | 0.995 | 0.747 | 0.733 | 0.0 | |
| 296080932 | 607 | unnamed protein product [Vitis vinifera] | 0.942 | 0.757 | 0.706 | 0.0 | |
| 297744892 | 614 | unnamed protein product [Vitis vinifera] | 0.942 | 0.749 | 0.700 | 0.0 | |
| 356545004 | 629 | PREDICTED: putative pentatricopeptide re | 0.995 | 0.772 | 0.648 | 0.0 | |
| 225438894 | 628 | PREDICTED: pentatricopeptide repeat-cont | 0.995 | 0.773 | 0.521 | 1e-157 | |
| 147790932 | 575 | hypothetical protein VITISV_001089 [Viti | 0.995 | 0.845 | 0.519 | 1e-156 | |
| 334188487 | 544 | pentatricopeptide repeat-containing prot | 0.803 | 0.720 | 0.643 | 1e-156 | |
| 449448280 | 645 | PREDICTED: pentatricopeptide repeat-cont | 0.995 | 0.753 | 0.517 | 1e-152 |
| >gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa] gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/488 (74%), Positives = 427/488 (87%), Gaps = 14/488 (2%)
Query: 1 EGREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY 60
EGRE+H QVLKLGL SNRS R+KL+ELYGKCG F+DA ++FDEMPE DVVASTVMIN Y
Sbjct: 148 EGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPE-RDVVASTVMINYY 206
Query: 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV 120
+HG +KDTVCWTAMIDGLVRNGE RAL++FR MQR++V PNEVTIV
Sbjct: 207 FDHG-------------IKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIV 253
Query: 121 CVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER 180
CVLSACS+LGAL+LGRW+ SYM KHRI+LNH VGGALINMYSRCGDID+A +VFE+MKE+
Sbjct: 254 CVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEK 313
Query: 181 DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIF 240
+V TYNS+I G A+HG+S+EAVE+FR +I QG P+ VTFVGVLNACSHGGL +LGFEIF
Sbjct: 314 NVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIF 373
Query: 241 QSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGK 300
SM +DYGIEPQIEHYGC+VDLL R+GR EEAY FI MK+APDH+MLG+LLSACKIHG
Sbjct: 374 HSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHGN 433
Query: 301 LQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIE 360
L+L E++AK L+ C++ADSGTY+LLSNAY+SSGKWKEA ++R M+E G++KEPGCSSIE
Sbjct: 434 LELAERVAKSLVACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKEPGCSSIE 493
Query: 361 VNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAIH 420
VNNEIHEF+LGD+RHPQ+E+IYKK++EL QI++LEGY+P+TEVVLHDIE EKEWALAIH
Sbjct: 494 VNNEIHEFLLGDLRHPQKEKIYKKLEELNQILRLEGYTPATEVVLHDIEKSEKEWALAIH 553
Query: 421 SERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFENG 480
SERLAICYGLISTKP TT+RVVKNLRVCNDCH IKLI+NIT+RKI+VRDRNRFHHFENG
Sbjct: 554 SERLAICYGLISTKPLTTLRVVKNLRVCNDCHLTIKLISNITRRKIVVRDRNRFHHFENG 613
Query: 481 TCSCGDYW 488
CSCGDYW
Sbjct: 614 VCSCGDYW 621
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/488 (73%), Positives = 420/488 (86%), Gaps = 2/488 (0%)
Query: 1 EGREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY 60
EGRE+H + LKLGL SNR RL+++ELYGKCGE DA ++F+EMPE DVVASTVMI+ Y
Sbjct: 165 EGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPE--DVVASTVMISSY 222
Query: 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV 120
+ GLVE A VFSRV+ KDTVCWTAMIDG VRN EM RAL+ FR MQ +NVRPNE TIV
Sbjct: 223 SDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIV 282
Query: 121 CVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER 180
CVLSACSQLGALE+GRW+HSYM K I+LN VG ALINMYSRCG ID+A VF+EMK+R
Sbjct: 283 CVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDR 342
Query: 181 DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIF 240
DV TYN++I+GL+M+G+S +A+E+FR MI + +RPT VTFVGVLNACSHGGLVD GF+IF
Sbjct: 343 DVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIF 402
Query: 241 QSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGK 300
SMTRDYG+EPQIEHYGC+VDLL RVGR EEAYD I MK+ PDHIMLG+LLSACK+H
Sbjct: 403 HSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKN 462
Query: 301 LQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIE 360
L+LGEQ+AK L D ADSGTYVLLS+ YASSGKWKEA Q+RAKMKEAG+QKEPGCSSIE
Sbjct: 463 LELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIE 522
Query: 361 VNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAIH 420
VNNEIHEF+LGD+RHP++E+IY+K++EL ++++LEGY P EVVL DIED EKEWALAIH
Sbjct: 523 VNNEIHEFLLGDLRHPRKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIH 582
Query: 421 SERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFENG 480
SERLAICYGLIST+P T IRV+KNLRVC DCHS IKLIA IT+RK++VRDRNRFH+FENG
Sbjct: 583 SERLAICYGLISTEPCTVIRVMKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENG 642
Query: 481 TCSCGDYW 488
CSCGDYW
Sbjct: 643 ACSCGDYW 650
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/488 (73%), Positives = 416/488 (85%), Gaps = 2/488 (0%)
Query: 1 EGREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY 60
EGRE+H + LKLG SNR RL+++ELYGKCGE DA ++F+EMPE DVVASTVMI+ Y
Sbjct: 165 EGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPE--DVVASTVMISSY 222
Query: 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV 120
+ GLVE A VFSRV+ KDTVCWTAMIDG VRN E RAL+ FR MQ +NVRPNE TIV
Sbjct: 223 SDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIV 282
Query: 121 CVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER 180
CVLSACSQLGALE+GRW+HSYM K I+LN VG ALINMYSRCG ID+A VF+EMK+R
Sbjct: 283 CVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDR 342
Query: 181 DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIF 240
DV TYN++I+GL+M+G+S +A+E+FR M+ + +RPT VTFVGVLNACSHGGLVD GFEIF
Sbjct: 343 DVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIF 402
Query: 241 QSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGK 300
SM RDY +EPQIEHYGC+VDLL RVGR EEAYD I MK+ PDHIMLG+LLSACK+H
Sbjct: 403 HSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKN 462
Query: 301 LQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIE 360
L+LGEQ+AK L D ADSGTYVLLS+ YASSGKWKEA Q+RAKMKEAG+QKEPGCSSIE
Sbjct: 463 LELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIE 522
Query: 361 VNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAIH 420
VNNEIHEF+LGD+RHPQ+E+IY+K++EL ++++LEGY P EVVL DIED EKEWALA+H
Sbjct: 523 VNNEIHEFLLGDLRHPQKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMH 582
Query: 421 SERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFENG 480
SERLAICYGLIST+P T IRV+KNLRVC DCHS IKLIA IT+RKI+VRDRNRFH+FENG
Sbjct: 583 SERLAICYGLISTEPCTMIRVMKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENG 642
Query: 481 TCSCGDYW 488
CSCGDYW
Sbjct: 643 ACSCGDYW 650
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/488 (70%), Positives = 401/488 (82%), Gaps = 28/488 (5%)
Query: 1 EGREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY 60
EGRE+H + LKLGL SNR RL+++ELYGKCGE DA ++F+EMPE DVVA
Sbjct: 148 EGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPE--DVVA-------- 197
Query: 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV 120
KDTVCWTAMIDG VRN EM RAL+ FR MQ +NVRPNE TIV
Sbjct: 198 ------------------KDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIV 239
Query: 121 CVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER 180
CVLSACSQLGALE+GRW+HSYM K I+LN VG ALINMYSRCG ID+A VF+EMK+R
Sbjct: 240 CVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDR 299
Query: 181 DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIF 240
DV TYN++I+GL+M+G+S +A+E+FR MI + +RPT VTFVGVLNACSHGGLVD GF+IF
Sbjct: 300 DVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIF 359
Query: 241 QSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGK 300
SMTRDYG+EPQIEHYGC+VDLL RVGR EEAYD I MK+ PDHIMLG+LLSACK+H
Sbjct: 360 HSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKN 419
Query: 301 LQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIE 360
L+LGEQ+AK L D ADSGTYVLLS+ YASSGKWKEA Q+RAKMKEAG+QKEPGCSSIE
Sbjct: 420 LELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIE 479
Query: 361 VNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAIH 420
VNNEIHEF+LGD+RHP++E+IY+K++EL ++++LEGY P EVVL DIED EKEWALAIH
Sbjct: 480 VNNEIHEFLLGDLRHPRKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIH 539
Query: 421 SERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFENG 480
SERLAICYGLIST+P T IRV+KNLRVC DCHS IKLIA IT+RK++VRDRNRFH+FENG
Sbjct: 540 SERLAICYGLISTEPCTVIRVMKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENG 599
Query: 481 TCSCGDYW 488
CSCGDYW
Sbjct: 600 ACSCGDYW 607
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/488 (70%), Positives = 397/488 (81%), Gaps = 28/488 (5%)
Query: 1 EGREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY 60
EGRE+H + LKLG SNR RL+++ELYGKCGE DA ++F+EMPE DVVA
Sbjct: 155 EGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPE--DVVA-------- 204
Query: 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV 120
KDTVCWTAMIDG VRN E RAL+ FR MQ +NVRPNE TIV
Sbjct: 205 ------------------KDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIV 246
Query: 121 CVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER 180
CVLSACSQLGALE+GRW+HSYM K I+LN VG ALINMYSRCG ID+A VF+EMK+R
Sbjct: 247 CVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDR 306
Query: 181 DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIF 240
DV TYN++I+GL+M+G+S +A+E+FR M+ + +RPT VTFVGVLNACSHGGLVD GFEIF
Sbjct: 307 DVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIF 366
Query: 241 QSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGK 300
SM RDY +EPQIEHYGC+VDLL RVGR EEAYD I MK+ PDHIMLG+LLSACK+H
Sbjct: 367 HSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKN 426
Query: 301 LQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIE 360
L+LGEQ+AK L D ADSGTYVLLS+ YASSGKWKEA Q+RAKMKEAG+QKEPGCSSIE
Sbjct: 427 LELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIE 486
Query: 361 VNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAIH 420
VNNEIHEF+LGD+RHPQ+E+IY+K++EL ++++LEGY P EVVL DIED EKEWALA+H
Sbjct: 487 VNNEIHEFLLGDLRHPQKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMH 546
Query: 421 SERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFENG 480
SERLAICYGLIST+P T IRV+KNLRVC DCHS IKLIA IT+RKI+VRDRNRFH+FENG
Sbjct: 547 SERLAICYGLISTEPCTMIRVMKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENG 606
Query: 481 TCSCGDYW 488
CSCGDYW
Sbjct: 607 ACSCGDYW 614
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/487 (64%), Positives = 392/487 (80%), Gaps = 1/487 (0%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
G+E+HG VLK GL +RS LKLVELYGKCG +DA ++FD MPE DVVA TVMI
Sbjct: 144 GKEVHGLVLKSGLGLDRSIALKLVELYGKCGVLEDARKMFDGMPE-RDVVACTVMIGSCF 202
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVC 121
+ G+VE A EVF+ + +DTVCWT +IDGLVRNGE R L++FREMQ V PNEVT VC
Sbjct: 203 DCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVC 262
Query: 122 VLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD 181
VLSAC+QLGALELGRWIH+YM K +++N V GALINMYSRCGDID+A +F+ ++ +D
Sbjct: 263 VLSACAQLGALELGRWIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKD 322
Query: 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQ 241
V+TYNS+I GLA+HG+SIEAVE+F EM+ + +RP +TFVGVLNACSHGGLVDLG EIF+
Sbjct: 323 VSTYNSMIGGLALHGKSIEAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFE 382
Query: 242 SMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKL 301
SM +GIEP++EHYGC+VD+L RVGR EEA+DFI M + D ML SLLSACKIH +
Sbjct: 383 SMEMIHGIEPEVEHYGCMVDILGRVGRLEEAFDFIGRMGVEADDKMLCSLLSACKIHKNI 442
Query: 302 QLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIEV 361
+GE++AK L + DSG++++LSN YAS G+W A ++R KM++ G+ KEPGCSSIEV
Sbjct: 443 GMGEKVAKLLSEHYRIDSGSFIMLSNFYASLGRWSYAAEVREKMEKGGIIKEPGCSSIEV 502
Query: 362 NNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAIHS 421
NN IHEF GD+RHP+R++IYKK++EL + K EGY P+TEV LHDI+D +KE ALA+HS
Sbjct: 503 NNAIHEFFSGDLRHPERKRIYKKLEELNYLTKFEGYLPATEVALHDIDDEQKELALAVHS 562
Query: 422 ERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFENGT 481
ERLAICYGL+ST+ YTT+RV KNLR+C+DCH+MIKLIA IT+RKI+VRDRNRFHHFENG
Sbjct: 563 ERLAICYGLVSTEAYTTLRVGKNLRICDDCHAMIKLIAKITRRKIVVRDRNRFHHFENGE 622
Query: 482 CSCGDYW 488
CSC DYW
Sbjct: 623 CSCKDYW 629
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 254/487 (52%), Positives = 355/487 (72%), Gaps = 1/487 (0%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
G+ +H Q +KLG S+ R L+++Y + G+ A QLFD MPE +V+ T M+ CY
Sbjct: 143 GKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPE-KSLVSLTAMLTCYA 201
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVC 121
+HG ++ A +F ++ +D VCW MIDG +NG AL LFR M + +PNEVT++
Sbjct: 202 KHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLS 261
Query: 122 VLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD 181
VLSAC QLGALE GRW+HSY+ + I N VG AL++MYS+CG ++ A VF+++ ++D
Sbjct: 262 VLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKD 321
Query: 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQ 241
V +NS+I G AMHG S EA+++F+ M G+ PT +TF+G+L+AC H G V G++IF
Sbjct: 322 VVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFN 381
Query: 242 SMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKL 301
M +YGIEP+IEHYGC+V+LL R G E+AY+ + NM I PD ++ G+LL AC++HGK+
Sbjct: 382 KMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKI 441
Query: 302 QLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIEV 361
LGE+I + L+D A+SGTY+LLSN YA+ G W ++R MK++GV+KEPGCSSIEV
Sbjct: 442 ALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEV 501
Query: 362 NNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAIHS 421
NN++HEF+ G + HP+R++IY ++E+ +K GY+P T++VLHDI + EKE +L +HS
Sbjct: 502 NNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHS 561
Query: 422 ERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFENGT 481
E+LAI +GLI+T+P TTI++VKNLRVC DCH + KLI+ IT RKI+VRDRNRFHHF NG+
Sbjct: 562 EKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGS 621
Query: 482 CSCGDYW 488
CSCGDYW
Sbjct: 622 CSCGDYW 628
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 253/487 (51%), Positives = 354/487 (72%), Gaps = 1/487 (0%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
G+ +H Q +KLG S+ R L+++Y + G+ A QLFD MPE +V+ T M+ CY
Sbjct: 90 GKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPE-KSLVSLTAMLTCYA 148
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVC 121
+HG ++ A +F ++ +D VCW MIDG +NG AL LFR M + +PNEVT++
Sbjct: 149 KHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLS 208
Query: 122 VLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD 181
VLSAC QLGALE GRW+HSY+ + I N VG AL++MYS+CG ++ A VF+++ ++D
Sbjct: 209 VLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKD 268
Query: 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQ 241
V +NS+I G AM G S EA+++F+ M G+ PT +TF+G+L+AC H G V G++IF
Sbjct: 269 VVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFN 328
Query: 242 SMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKL 301
M +YGIEP+IEHYGC+V+LL R G E+AY+ + NM I PD ++ G+LL AC++HGK+
Sbjct: 329 KMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKI 388
Query: 302 QLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIEV 361
LGE+I + L+D A+SGTY+LLSN YA+ G W ++R MK++GV+KEPGCSSIEV
Sbjct: 389 ALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEV 448
Query: 362 NNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAIHS 421
NN++HEF+ G + HP+R++IY ++E+ +K GY+P T++VLHDI + EKE +L +HS
Sbjct: 449 NNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHS 508
Query: 422 ERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFENGT 481
E+LAI +GLI+T+P TTI++VKNLRVC DCH + KLI+ IT RKI+VRDRNRFHHF NG+
Sbjct: 509 EKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGS 568
Query: 482 CSCGDYW 488
CSCGDYW
Sbjct: 569 CSCGDYW 575
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334188487|ref|NP_200728.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75170817|sp|Q9FIF7.1|PP435_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic; Flags: Precursor gi|9759241|dbj|BAB09765.1| unnamed protein product [Arabidopsis thaliana] gi|332009773|gb|AED97156.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust.
Identities = 253/393 (64%), Positives = 325/393 (82%), Gaps = 1/393 (0%)
Query: 3 REIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVE 62
REIH QVLKLG S+RS LK++E+YGK GE +A ++FDEMP+ D VA+TVMINCY E
Sbjct: 143 REIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPD-RDHVAATVMINCYSE 201
Query: 63 HGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCV 122
G ++ A E+F VK+KDTVCWTAMIDGLVRN EM +AL+LFREMQ +NV NE T VCV
Sbjct: 202 CGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCV 261
Query: 123 LSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDV 182
LSACS LGALELGRW+HS++ R++L++ VG ALINMYSRCGDI++A +VF M+++DV
Sbjct: 262 LSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDV 321
Query: 183 TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQS 242
+YN++I+GLAMHG S+EA+ FR+M+N+G RP +VT V +LNACSHGGL+D+G E+F S
Sbjct: 322 ISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNS 381
Query: 243 MTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQ 302
M R + +EPQIEHYGCIVDLL RVGR EEAY FI N+ I PDHIMLG+LLSACKIHG ++
Sbjct: 382 MKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNME 441
Query: 303 LGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIEVN 362
LGE+IAKRL + + DSGTYVLLSN YASSGKWKE+ +IR M+++G++KEPGCS+IEV+
Sbjct: 442 LGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRDSGIEKEPGCSTIEVD 501
Query: 363 NEIHEFILGDIRHPQREQIYKKMQELKQIVKLE 395
N+IHEF++GDI HP +E IY+++QEL +I++ +
Sbjct: 502 NQIHEFLVGDIAHPHKEAIYQRLQELNRILRFK 534
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380, chloroplastic-like [Cucumis sativus] gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust.
Identities = 252/487 (51%), Positives = 353/487 (72%), Gaps = 1/487 (0%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
G+ +H Q +KLGL S+ R LV++Y + G+ A QLFD+MPE +V+ T M+ CY
Sbjct: 160 GKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPE-RSLVSLTTMLTCYS 218
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVC 121
+ G ++ A +F +K +D VCW MI G ++G +L LFR M PNEVT++
Sbjct: 219 KMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLA 278
Query: 122 VLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD 181
VLSAC QLGALE GRWIHSY+ I +N VG ALI+MYS+CG ++ A VF+ ++++D
Sbjct: 279 VLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKD 338
Query: 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQ 241
V +NS+I G AMHG S A+++F EM G +PT +TF+G+L+AC HGGLV+ G F+
Sbjct: 339 VVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFR 398
Query: 242 SMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKL 301
M YGIEP+IEHYGC+V+LL R G EEAY + NM IA D ++ G+LL C++H +
Sbjct: 399 LMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNI 458
Query: 302 QLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIEV 361
+LGE+IAK L+D + A+SGTYVLLSN YA++G W+ ++R MKE G++KE GCSSIEV
Sbjct: 459 KLGEEIAKFLVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEV 518
Query: 362 NNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAIHS 421
+N++HEF+ G+ +HP+ ++IY + E+ +K GY+P T+VVLHD+ + +KE +L +HS
Sbjct: 519 DNKVHEFVAGERKHPKSKEIYVMLNEINSWLKARGYTPQTDVVLHDLREEQKEQSLEVHS 578
Query: 422 ERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFENGT 481
E+LAI +GLISTKP TT+++VKNLRVC+DCH+++K+I+ IT RKI++RDRNRFHHFE+G
Sbjct: 579 EKLAIAFGLISTKPGTTVKIVKNLRVCSDCHTVMKMISEITGRKIVMRDRNRFHHFEDGL 638
Query: 482 CSCGDYW 488
CSCGDYW
Sbjct: 639 CSCGDYW 645
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 488 | ||||||
| TAIR|locus:2126352 | 632 | AT4G37380 [Arabidopsis thalian | 0.995 | 0.768 | 0.480 | 9.6e-128 | |
| TAIR|locus:2060640 | 738 | OTP81 "ORGANELLE TRANSCRIPT PR | 0.995 | 0.658 | 0.478 | 1.2e-120 | |
| TAIR|locus:2154855 | 620 | AT5G66520 "AT5G66520" [Arabido | 0.997 | 0.785 | 0.464 | 6.9e-118 | |
| TAIR|locus:2154389 | 646 | LPA66 "LOW PSII ACCUMULATION 6 | 1.0 | 0.755 | 0.443 | 1.1e-117 | |
| TAIR|locus:2144143 | 622 | AT5G06540 [Arabidopsis thalian | 0.995 | 0.781 | 0.448 | 1.1e-117 | |
| TAIR|locus:2081635 | 573 | AT3G62890 [Arabidopsis thalian | 0.995 | 0.848 | 0.423 | 5.8e-114 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 1.0 | 0.658 | 0.425 | 5.2e-113 | |
| TAIR|locus:2125899 | 990 | AT4G33170 [Arabidopsis thalian | 0.901 | 0.444 | 0.445 | 8.9e-113 | |
| TAIR|locus:4010713776 | 659 | AT3G26782 [Arabidopsis thalian | 0.899 | 0.666 | 0.427 | 5.5e-111 | |
| TAIR|locus:1009023396 | 612 | AT5G40405 "AT5G40405" [Arabido | 0.995 | 0.794 | 0.427 | 1.4e-110 |
| TAIR|locus:2126352 AT4G37380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1254 (446.5 bits), Expect = 9.6e-128, P = 9.6e-128
Identities = 235/489 (48%), Positives = 338/489 (69%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
G+ IH VLK GL + LV++Y K G+ A ++FD MPE +V+ST MI CY
Sbjct: 145 GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPE-RSLVSSTAMITCYA 203
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNV-RPNEVTIV 120
+ G VE A +F + +D V W MIDG ++G AL LF+++ + +P+E+T+V
Sbjct: 204 KQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVV 263
Query: 121 CVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER 180
LSACSQ+GALE GRWIH ++ RI LN V LI+MYS+CG +++A+ VF + +
Sbjct: 264 AALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRK 323
Query: 181 DVTTYNSLIAGLAMHGRSIEAVEMFREMIN-QGIRPTKVTFVGVLNACSHGGLVDLGFEI 239
D+ +N++IAG AMHG S +A+ +F EM G++PT +TF+G L AC+H GLV+ G I
Sbjct: 324 DIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRI 383
Query: 240 FQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHG 299
F+SM ++YGI+P+IEHYGC+V LL R G+ + AY+ I NM + D ++ S+L +CK+HG
Sbjct: 384 FESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHG 443
Query: 300 KLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSI 359
LG++IA+ L+ +SG YVLLSN YAS G ++ ++R MKE G+ KEPG S+I
Sbjct: 444 DFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTI 503
Query: 360 EVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAI 419
E+ N++HEF GD H + ++IY ++++ + +K GY P+T VL D+E+ EKE +L +
Sbjct: 504 EIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQV 563
Query: 420 HSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFEN 479
HSERLAI YGLISTKP + +++ KNLRVC+DCH++ KLI+ IT RKI++RDRNRFHHF +
Sbjct: 564 HSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTD 623
Query: 480 GTCSCGDYW 488
G+CSCGD+W
Sbjct: 624 GSCSCGDFW 632
|
|
| TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1187 (422.9 bits), Expect = 1.2e-120, P = 1.2e-120
Identities = 234/489 (47%), Positives = 319/489 (65%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
GR++ + + + N + ++++Y KCG +DA +LFD M E D V T M++ Y
Sbjct: 251 GRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEE-KDNVTWTTMLDGYA 309
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQ-RDNVRPNEVTIV 120
E A EV + + KD V W A+I +NG+ AL +F E+Q + N++ N++T+V
Sbjct: 310 ISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLV 369
Query: 121 CVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER 180
LSAC+Q+GALELGRWIHSY+ KH I +N V ALI+MYS+CGD++K+ +VF +++R
Sbjct: 370 STLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKR 429
Query: 181 DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIF 240
DV ++++I GLAMHG EAV+MF +M ++P VTF V ACSH GLVD +F
Sbjct: 430 DVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLF 489
Query: 241 QSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGK 300
M +YGI P+ +HY CIVD+L R G E+A FI M I P + G+LL ACKIH
Sbjct: 490 HQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHAN 549
Query: 301 LQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIE 360
L L E RLL+ + G +VLLSN YA GKW+ ++R M+ G++KEPGCSSIE
Sbjct: 550 LNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIE 609
Query: 361 VNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWE-KEWALAI 419
++ IHEF+ GD HP E++Y K+ E+ + +K GY P VL IE+ E KE +L +
Sbjct: 610 IDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNL 669
Query: 420 HSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFEN 479
HSE+LAICYGLIST+ IRV+KNLRVC DCHS+ KLI+ + R+IIVRDR RFHHF N
Sbjct: 670 HSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRN 729
Query: 480 GTCSCGDYW 488
G CSC D+W
Sbjct: 730 GQCSCNDFW 738
|
|
| TAIR|locus:2154855 AT5G66520 "AT5G66520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1161 (413.8 bits), Expect = 6.9e-118, P = 6.9e-118
Identities = 227/489 (46%), Positives = 318/489 (65%)
Query: 1 EGREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY 60
E +IH Q+ KLG ++ L+ Y G FK A LFD +PE +DV ++V I Y
Sbjct: 133 ETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSV-IKGY 191
Query: 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV 120
V+ G ++ A +F ++ K+ + WT MI G V+ AL LF EMQ +V P+ V++
Sbjct: 192 VKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLA 251
Query: 121 CVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER 180
LSAC+QLGALE G+WIHSY+ K RI ++ ++G LI+MY++CG++++AL+VF+ +K++
Sbjct: 252 NALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKK 311
Query: 181 DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIF 240
V + +LI+G A HG EA+ F EM GI+P +TF VL ACS+ GLV+ G IF
Sbjct: 312 SVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIF 371
Query: 241 QSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGK 300
SM RDY ++P IEHYGCIVDLL R G +EA FI M + P+ ++ G+LL AC+IH
Sbjct: 372 YSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKN 431
Query: 301 LQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIE 360
++LGE+I + L+ G YV +N +A KW +A + R MKE GV K PGCS+I
Sbjct: 432 IELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTIS 491
Query: 361 VNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHD-IEDWEKEWALAI 419
+ HEF+ GD HP+ E+I K + +++ ++ GY P E +L D ++D E+E +
Sbjct: 492 LEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQ 551
Query: 420 HSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFEN 479
HSE+LAI YGLI TKP T IR++KNLRVC DCH + KLI+ I KR I++RDR RFHHF +
Sbjct: 552 HSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRD 611
Query: 480 GTCSCGDYW 488
G CSCGDYW
Sbjct: 612 GKCSCGDYW 620
|
|
| TAIR|locus:2154389 LPA66 "LOW PSII ACCUMULATION 66" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1159 (413.0 bits), Expect = 1.1e-117, P = 1.1e-117
Identities = 222/501 (44%), Positives = 324/501 (64%)
Query: 1 EGREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLF-------------DEMPEC 47
EG++IHG LK G + LV +Y CG KDA LF D
Sbjct: 146 EGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRD 205
Query: 48 NDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREM 107
++V VMI+ Y+ G + A +F +++ + V W MI G NG A+++FREM
Sbjct: 206 GEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREM 265
Query: 108 QRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDI 167
++ ++RPN VT+V VL A S+LG+LELG W+H Y I ++ ++G ALI+MYS+CG I
Sbjct: 266 KKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGII 325
Query: 168 DKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNAC 227
+KA+ VFE + +V T++++I G A+HG++ +A++ F +M G+RP+ V ++ +L AC
Sbjct: 326 EKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTAC 385
Query: 228 SHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIM 287
SHGGLV+ G F M G+EP+IEHYGC+VDLL R G +EA +FI NM I PD ++
Sbjct: 386 SHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVI 445
Query: 288 LGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347
+LL AC++ G +++G+++A L+D DSG YV LSN YAS G W E ++R +MKE
Sbjct: 446 WKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKE 505
Query: 348 AGVQKEPGCSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHD 407
++K+PGCS I+++ +HEF++ D HP+ ++I + E+ ++L GY P T VL +
Sbjct: 506 KDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLN 565
Query: 408 IEDWEKEWALAIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKII 467
+E+ +KE L HSE++A +GLIST P IR+VKNLR+C DCHS IKLI+ + KRKI
Sbjct: 566 LEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKIT 625
Query: 468 VRDRNRFHHFENGTCSCGDYW 488
VRDR RFHHF++G+CSC DYW
Sbjct: 626 VRDRKRFHHFQDGSCSCMDYW 646
|
|
| TAIR|locus:2144143 AT5G06540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1159 (413.0 bits), Expect = 1.1e-117, P = 1.1e-117
Identities = 219/488 (44%), Positives = 329/488 (67%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
G + H Q+++ G +++ LV +Y CG A ++F +M DVV+ T M+ Y
Sbjct: 136 GEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMG-FRDVVSWTSMVAGYC 194
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVC 121
+ G+VENA E+F + ++ W+ MI+G +N +A+DLF M+R+ V NE +V
Sbjct: 195 KCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVS 254
Query: 122 VLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD 181
V+S+C+ LGALE G + Y+ K + +N I+G AL++M+ RCGDI+KA+ VFE + E D
Sbjct: 255 VISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETD 314
Query: 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQ 241
+++S+I GLA+HG + +A+ F +MI+ G P VTF VL+ACSHGGLV+ G EI++
Sbjct: 315 SLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYE 374
Query: 242 SMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKL 301
+M +D+GIEP++EHYGCIVD+L R G+ EA +FI M + P+ +LG+LL ACKI+
Sbjct: 375 NMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNT 434
Query: 302 QLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIEV 361
++ E++ L+ + SG YVLLSN YA +G+W + +R MKE V+K PG S IE+
Sbjct: 435 EVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEI 494
Query: 362 NNEIHEFILGDI-RHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAIH 420
+ +I++F +GD +HP+ +I +K +E+ ++L GY +T D+++ EKE ++ +H
Sbjct: 495 DGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESSIHMH 554
Query: 421 SERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFENG 480
SE+LAI YG++ TKP TTIR+VKNLRVC DCH++ KLI+ + R++IVRDRNRFHHF NG
Sbjct: 555 SEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNG 614
Query: 481 TCSCGDYW 488
CSC DYW
Sbjct: 615 VCSCRDYW 622
|
|
| TAIR|locus:2081635 AT3G62890 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1124 (400.7 bits), Expect = 5.8e-114, P = 5.8e-114
Identities = 209/494 (42%), Positives = 326/494 (65%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
G+ H Q+L GL + R L+ +Y CG+ + A ++FD+ D+ A ++N Y
Sbjct: 81 GQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGS-KDLPAWNSVVNAYA 139
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQ--RDN---VRPNE 116
+ GL+++A ++F + ++ + W+ +I+G V G+ ALDLFREMQ + N VRPNE
Sbjct: 140 KAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNE 199
Query: 117 VTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEE 176
T+ VLSAC +LGALE G+W+H+Y+ K+ ++++ ++G ALI+MY++CG +++A +VF
Sbjct: 200 FTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNA 259
Query: 177 M-KERDVTTYNSLIAGLAMHGRSIEAVEMFREMI-NQGIRPTKVTFVGVLNACSHGGLVD 234
+ ++DV Y+++I LAM+G + E ++F EM + I P VTFVG+L AC H GL++
Sbjct: 260 LGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLIN 319
Query: 235 LGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSA 294
G F+ M ++GI P I+HYGC+VDL R G +EA FI +M + PD ++ GSLLS
Sbjct: 320 EGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSG 379
Query: 295 CKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEP 354
++ G ++ E KRL++ +SG YVLLSN YA +G+W E IR +M+ G+ K P
Sbjct: 380 SRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVP 439
Query: 355 GCSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKE 414
GCS +EV +HEF++GD + E+IY + E+ Q ++ GY T+ VL D+ + +KE
Sbjct: 440 GCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKE 499
Query: 415 WALAIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRF 474
AL+ HSE+LAI + L+ T+P T +R++KNLR+C DCH ++K+I+ + R+I+VRD NRF
Sbjct: 500 IALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRF 559
Query: 475 HHFENGTCSCGDYW 488
HHF +G+CSC D+W
Sbjct: 560 HHFRDGSCSCRDFW 573
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1115 (397.6 bits), Expect = 5.2e-113, P = 5.2e-113
Identities = 210/493 (42%), Positives = 322/493 (65%)
Query: 1 EGREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQL---FDEMPECNDVVASTVMI 57
E E+ ++K +R + ST + +V + G + Q+ D+ +++ +I
Sbjct: 249 EALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALI 308
Query: 58 NCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEV 117
+ Y + G +E A +F R+ KD + W +I G AL LF+EM R PN+V
Sbjct: 309 DLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDV 368
Query: 118 TIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHI--VGGALINMYSRCGDIDKALQVFE 175
T++ +L AC+ LGA+++GRWIH Y+ K + + + +LI+MY++CGDI+ A QVF
Sbjct: 369 TMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFN 428
Query: 176 EMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDL 235
+ + ++++N++I G AMHGR+ + ++F M GI+P +TFVG+L+ACSH G++DL
Sbjct: 429 SILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDL 488
Query: 236 GFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSAC 295
G IF++MT+DY + P++EHYGC++DLL G +EA + I M++ PD ++ SLL AC
Sbjct: 489 GRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKAC 548
Query: 296 KIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPG 355
K+HG ++LGE A+ L+ + G+YVLLSN YAS+G+W E + RA + + G++K PG
Sbjct: 549 KMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPG 608
Query: 356 CSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEW 415
CSSIE+++ +HEFI+GD HP+ +IY ++E++ +++ G+ P T VL ++E+ KE
Sbjct: 609 CSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEG 668
Query: 416 ALAIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFH 475
AL HSE+LAI +GLISTKP T + +VKNLRVC +CH KLI+ I KR+II RDR RFH
Sbjct: 669 ALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFH 728
Query: 476 HFENGTCSCGDYW 488
HF +G CSC DYW
Sbjct: 729 HFRDGVCSCNDYW 741
|
|
| TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1022 (364.8 bits), Expect = 8.9e-113, Sum P(2) = 8.9e-113
Identities = 196/440 (44%), Positives = 288/440 (65%)
Query: 49 DVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQ 108
D+ S+ +++ YV+ G + A F + V D V WT MI G + NGE RA +F +M+
Sbjct: 551 DLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMR 610
Query: 109 RDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDID 168
V P+E TI + A S L ALE GR IH+ K + VG +L++MY++CG ID
Sbjct: 611 LMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSID 670
Query: 169 KALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACS 228
A +F+ ++ ++T +N+++ GLA HG E +++F++M + GI+P KVTF+GVL+ACS
Sbjct: 671 DAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACS 730
Query: 229 HGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIML 288
H GLV ++ +SM DYGI+P+IEHY C+ D L R G ++A + I +M + M
Sbjct: 731 HSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMY 790
Query: 289 GSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348
+LL+AC++ G + G+++A +LL+ DS YVLLSN YA++ KW E R MK
Sbjct: 791 RTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGH 850
Query: 349 GVQKEPGCSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDI 408
V+K+PG S IEV N+IH F++ D + Q E IY+K++++ + +K EGY P T+ L D+
Sbjct: 851 KVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDV 910
Query: 409 EDWEKEWALAIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIV 468
E+ EKE AL HSE+LA+ +GL+ST P T IRV+KNLRVC DCH+ +K IA + R+I++
Sbjct: 911 EEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVL 970
Query: 469 RDRNRFHHFENGTCSCGDYW 488
RD NRFH F++G CSCGDYW
Sbjct: 971 RDANRFHRFKDGICSCGDYW 990
|
|
| TAIR|locus:4010713776 AT3G26782 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1006 (359.2 bits), Expect = 5.5e-111, Sum P(2) = 5.5e-111
Identities = 189/442 (42%), Positives = 293/442 (66%)
Query: 50 VVASTVMINCYVE--HGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREM 107
V +++ Y + G V A ++F ++ KD V + +++ ++G A ++FR +
Sbjct: 218 VSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRL 277
Query: 108 QRDNVRP-NEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGD 166
++ V N +T+ VL A S GAL +G+ IH + + ++ + IVG ++I+MY +CG
Sbjct: 278 VKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGR 337
Query: 167 IDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNA 226
++ A + F+ MK ++V ++ ++IAG MHG + +A+E+F MI+ G+RP +TFV VL A
Sbjct: 338 VETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAA 397
Query: 227 CSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHI 286
CSH GL G+ F +M +G+EP +EHYGC+VDLL R G ++AYD I MK+ PD I
Sbjct: 398 CSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSI 457
Query: 287 MLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMK 346
+ SLL+AC+IH ++L E RL + S++ G Y+LLS+ YA +G+WK+ ++R MK
Sbjct: 458 IWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMK 517
Query: 347 EAGVQKEPGCSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLH 406
G+ K PG S +E+N E+H F++GD HPQRE+IY+ + EL + + GY +T V H
Sbjct: 518 NRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCH 577
Query: 407 DIEDWEKEWALAIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKI 466
D+++ EKE L +HSE+LAI +G+++T P +T+ VVKNLRVC+DCH++IKLI+ I R+
Sbjct: 578 DVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREF 637
Query: 467 IVRDRNRFHHFENGTCSCGDYW 488
+VRD RFHHF++G CSCGDYW
Sbjct: 638 VVRDAKRFHHFKDGGCSCGDYW 659
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| TAIR|locus:1009023396 AT5G40405 "AT5G40405" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1092 (389.5 bits), Expect = 1.4e-110, P = 1.4e-110
Identities = 208/487 (42%), Positives = 309/487 (63%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
G ++HG ++ G ++ + L+ LY + G ++F+ +P C D V T M+
Sbjct: 127 GLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIP-CPDFVCRTAMVTACA 185
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVC 121
G V A ++F + +D + W AMI G + GE AL++F MQ + V+ N V ++
Sbjct: 186 RCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMIS 245
Query: 122 VLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD 181
VLSAC+QLGAL+ GRW HSY+ +++I + + L+++Y++CGD++KA++VF M+E++
Sbjct: 246 VLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKN 305
Query: 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQ 241
V T++S + GLAM+G + +E+F M G+ P VTFV VL CS G VD G F
Sbjct: 306 VYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFD 365
Query: 242 SMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKL 301
SM ++GIEPQ+EHYGC+VDL +R GR E+A I M + P + SLL A +++ L
Sbjct: 366 SMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNL 425
Query: 302 QLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIEV 361
+LG +K++L+ +A+ G YVLLSN YA S W +R MK GV+K+PGCS +EV
Sbjct: 426 ELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEV 485
Query: 362 NNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAIHS 421
N E+HEF +GD HP+ QI +++ + ++L GY T V+ DI++ EKE AL +HS
Sbjct: 486 NGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHS 545
Query: 422 ERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFENGT 481
E+ AI +G++S K IR+VKNLRVC DCH + +I+ I R+IIVRDRNRFHHF++G
Sbjct: 546 EKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGH 605
Query: 482 CSCGDYW 488
CSC +W
Sbjct: 606 CSCNGFW 612
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FIF7 | PP435_ARATH | No assigned EC number | 0.6437 | 0.8032 | 0.7205 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pg.C_LG_II002404 | hypothetical protein (621 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 488 | |||
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-138 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-128 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-45 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-36 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-35 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-29 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-22 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-21 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 2e-21 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-11 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-09 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 9e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-04 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 413 bits (1062), Expect = e-138
Identities = 180/487 (36%), Positives = 279/487 (57%), Gaps = 32/487 (6%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
G+++H VLK G+ + L+++Y KCG+ +DA +FD MPE
Sbjct: 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE--------------- 287
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVC 121
K TV W +M+ G +G AL L+ EM+ V ++ T
Sbjct: 288 -----------------KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSI 330
Query: 122 VLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD 181
++ S+L LE + H+ + + L+ + AL+++YS+ G ++ A VF+ M ++
Sbjct: 331 MIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKN 390
Query: 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQ 241
+ ++N+LIAG HGR +AVEMF MI +G+ P VTF+ VL+AC + GL + G+EIFQ
Sbjct: 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQ 450
Query: 242 SMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKL 301
SM+ ++ I+P+ HY C+++LL R G +EAY I P M +LL+AC+IH L
Sbjct: 451 SMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNL 510
Query: 302 QLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIEV 361
+LG A++L YV+L N Y SSG+ EA ++ +K G+ P C+ IEV
Sbjct: 511 ELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEV 570
Query: 362 NNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAIHS 421
+ H F GD HPQ +IY+K+ EL + + GY +L D+++ E++ + HS
Sbjct: 571 KKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHS 630
Query: 422 ERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFENGT 481
E+LAI +GLI+T +T +++ ++ R+C DCH +IK IA +TKR+I+VRD +RFHHF+ G
Sbjct: 631 EKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGK 690
Query: 482 CSCGDYW 488
CSCGDYW
Sbjct: 691 CSCGDYW 697
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Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 393 bits (1011), Expect = e-128
Identities = 178/444 (40%), Positives = 260/444 (58%), Gaps = 17/444 (3%)
Query: 50 VVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQR 109
VV + +I Y + ++ A EVF + KD + WT++I GL N AL FR+M
Sbjct: 424 VVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL 483
Query: 110 DNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDK 169
++PN VT++ LSAC+++GAL G+ IH+++ + I + + AL+++Y RCG ++
Sbjct: 484 T-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNY 542
Query: 170 ALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSH 229
A F E+DV ++N L+ G HG+ AVE+F M+ G+ P +VTF+ +L ACS
Sbjct: 543 AWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601
Query: 230 GGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLG 289
G+V G E F SM Y I P ++HY C+VDLL R G+ EAY+FI M I PD + G
Sbjct: 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWG 661
Query: 290 SLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAG 349
+LL+AC+IH ++LGE A+ + + G Y+LL N YA +GKW E ++R M+E G
Sbjct: 662 ALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENG 721
Query: 350 VQKEPGCSSIEVNNEIHEFILGDIRHPQREQI-------YKKMQELKQIVKLEGYSPSTE 402
+ +PGCS +EV ++H F+ D HPQ ++I Y+KM+ E
Sbjct: 722 LTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIE 781
Query: 403 VVLHDIEDWEKEWALAIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANIT 462
V DI HSERLAI +GLI+T P I V KNL +C +CH+ +K I+ I
Sbjct: 782 VSKDDI--------FCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIV 833
Query: 463 KRKIIVRDRNRFHHFENGTCSCGD 486
+R+I VRD +FHHF++G CSCGD
Sbjct: 834 RREISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 3e-45
Identities = 112/349 (32%), Positives = 182/349 (52%), Gaps = 41/349 (11%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
GRE+HG V+K G + S L+++Y G + +A +
Sbjct: 307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK---------------------- 344
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVC 121
VFSR++ KD V WTAMI G +NG +AL+ + M++DNV P+E+TI
Sbjct: 345 ----------VFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394
Query: 122 VLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD 181
VLSAC+ LG L++G +H + + +V ALI MYS+C IDKAL+VF + E+D
Sbjct: 395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKD 454
Query: 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQ 241
V ++ S+IAGL ++ R EA+ FR+M+ ++P VT + L+AC+ G + G EI
Sbjct: 455 VISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHA 513
Query: 242 SMTR-DYGIEPQIEHYGCIVDLLSRVGRPEEAYD-FITNMKIAPDHIMLGSLLSACKIHG 299
+ R G + + + ++DL R GR A++ F ++ K D + LL+ HG
Sbjct: 514 HVLRTGIGFDGFLPN--ALLDLYVRCGRMNYAWNQFNSHEK---DVVSWNILLTGYVAHG 568
Query: 300 KLQLGEQIAKRLLDCR-SADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347
K + ++ R+++ + D T++ L A + SG + ++ M+E
Sbjct: 569 KGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE 617
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (356), Expect = 8e-36
Identities = 93/345 (26%), Positives = 151/345 (43%), Gaps = 64/345 (18%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
GRE+H V++ G + L+ +Y KCG+ A +FD MP
Sbjct: 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP---------------- 249
Query: 62 EHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVC 121
+D + W AMI G NGE L+LF M+ +V P+ +TI
Sbjct: 250 ----------------RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITS 293
Query: 122 VLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD 181
V+SAC LG LGR +H Y+ K ++ V +LI MY G +A +VF M+ +D
Sbjct: 294 VISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKD 353
Query: 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQ 241
++ ++I+G +G +A+E + M + P ++T VL+AC+ G +D+G ++ +
Sbjct: 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413
Query: 242 ---------------SMTRDYG----IEPQIEHYGCIV--DLLSRVG---------RPEE 271
++ Y I+ +E + I D++S R E
Sbjct: 414 LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFE 473
Query: 272 AYDFITNMK--IAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDC 314
A F M + P+ + L + LSAC G L G++I +L
Sbjct: 474 ALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT 518
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (351), Expect = 3e-35
Identities = 91/337 (27%), Positives = 145/337 (43%), Gaps = 67/337 (19%)
Query: 5 IHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHG 64
++ V G ++ +++ ++ KCG DA +LFDEMPE
Sbjct: 145 VYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE------------------ 186
Query: 65 LVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLS 124
++ W +I GLV G A LFREM D T V +L
Sbjct: 187 --------------RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLR 232
Query: 125 ACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTT 184
A + LG+ G+ +H + K + + V ALI+MYS+CGDI+ A VF+ M E+
Sbjct: 233 ASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVA 292
Query: 185 YNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMT 244
+NS++AG A+HG S EA+ ++ EM + G+ + TF ++ S L++ + +
Sbjct: 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352
Query: 245 RDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM------------------------- 279
R G I +VDL S+ GR E+A + M
Sbjct: 353 RT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAV 411
Query: 280 ---------KIAPDHIMLGSLLSACKIHGKLQLGEQI 307
+AP+H+ ++LSAC+ G + G +I
Sbjct: 412 EMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448
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Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 9e-29
Identities = 88/335 (26%), Positives = 155/335 (46%), Gaps = 46/335 (13%)
Query: 56 MINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPN 115
M++ +V G + +A+ VF ++ +D W ++ G + G AL L+ M VRP+
Sbjct: 127 MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPD 186
Query: 116 EVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFE 175
T CVL C + L GR +H+++ + +L+ V ALI MY +CGD+ A VF+
Sbjct: 187 VYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFD 246
Query: 176 EMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACS------- 228
M RD ++N++I+G +G +E +E+F M + P +T V++AC
Sbjct: 247 RMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERL 306
Query: 229 ----HGGLVDLGFEI----FQSMTRDYGIEPQIEHYGCIVDLLSRV-------------- 266
HG +V GF + S+ + Y + +G + SR+
Sbjct: 307 GREMHGYVVKTGFAVDVSVCNSLIQMYL---SLGSWGEAEKVFSRMETKDAVSWTAMISG 363
Query: 267 ----GRPEEAYDFITNMKI---APDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADS 319
G P++A + M+ +PD I + S+LSAC G L +G ++ +
Sbjct: 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHEL---AERKGL 420
Query: 320 GTYVLLSNA----YASSGKWKEAVQIRAKMKEAGV 350
+YV+++NA Y+ +A+++ + E V
Sbjct: 421 ISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV 455
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 98.8 bits (246), Expect = 9e-22
Identities = 76/276 (27%), Positives = 135/276 (48%), Gaps = 20/276 (7%)
Query: 49 DVVASTVMINCYVEHGLVENAFEVF---SRVKVKDTV-CWTAMIDGLVRNGEMARALDLF 104
D T +I+ + G V+ FEVF V+ V + A+IDG R G++A+A +
Sbjct: 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530
Query: 105 REMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMG--KHRIDLNHIVGGALINMYS 162
M+ NV+P+ V ++SAC Q GA++ + + M H ID +HI GAL+ +
Sbjct: 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590
Query: 163 RCGDIDKALQVFEEMKERDV----TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKV 218
G +D+A +V++ + E ++ Y + + G A+ ++ +M +G++P +V
Sbjct: 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650
Query: 219 TFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEA---YDF 275
F +++ H G +D FEI Q R GI+ Y ++ S ++A Y+
Sbjct: 651 FFSALVDVAGHAGDLDKAFEILQDA-RKQGIKLGTVSYSSLMGACSNAKNWKKALELYED 709
Query: 276 ITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRL 311
I ++K+ P + +L++A L G Q+ K L
Sbjct: 710 IKSIKLRPTVSTMNALITA------LCEGNQLPKAL 739
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 98.0 bits (244), Expect = 1e-21
Identities = 78/301 (25%), Positives = 130/301 (43%), Gaps = 46/301 (15%)
Query: 85 TAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGK 144
+ + L +G++ +AL L MQ V +E V + C A+E G + S
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 145 HRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEM 204
L +G A+++M+ R G++ A VF +M ERD+ ++N L+ G A G EA+ +
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 205 FREMINQGIRPTKVTFVGVLNACSHGGLVDL--GFEIFQSMTRDYGIEPQIEHYGCIVDL 262
+ M+ G+RP TF VL C GG+ DL G E+ + R +G E ++ ++ +
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTC--GGIPDLARGREVHAHVVR-FGFELDVDVVNALITM 231
Query: 263 LSRVGRPEEA---------YDFIT-NMKIA------------------------PDHIML 288
+ G A D I+ N I+ PD + +
Sbjct: 232 YVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTI 291
Query: 289 GSLLSACKIHGKLQLGEQI----AKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAK 344
S++SAC++ G +LG ++ K D L Y S G W EA ++ ++
Sbjct: 292 TSVISACELLGDERLGREMHGYVVKTGFA---VDVSVCNSLIQMYLSLGSWGEAEKVFSR 348
Query: 345 M 345
M
Sbjct: 349 M 349
|
Length = 857 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 2e-21
Identities = 49/131 (37%), Positives = 68/131 (51%), Gaps = 21/131 (16%)
Query: 354 PGCSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWE- 412
PGC E + + GD HP +EL Q +K+EG P T+ + HD++ E
Sbjct: 1 PGCVWSE----GKKTLSGDGSHPT------SKEELFQRIKVEGVVPETKEIGHDVDAEEF 50
Query: 413 -----KEWALAIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKII 467
K LA H+E+ A+ YGL+ TT + R+C DCH + IA T R+II
Sbjct: 51 RDNGIKGKLLASHAEKQALAYGLL-----TTRIIKVLKRMCGDCHEFFRYIAKYTGREII 105
Query: 468 VRDRNRFHHFE 478
VRD +RFHHF+
Sbjct: 106 VRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 79.2 bits (195), Expect = 2e-15
Identities = 54/210 (25%), Positives = 97/210 (46%), Gaps = 9/210 (4%)
Query: 64 GLVENAFEVFSRVK---VKDT-VCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTI 119
G V+ A EV+ + +K T +T ++ + G+ AL ++ +M++ V+P+EV
Sbjct: 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF 652
Query: 120 VCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMK- 178
++ G L+ I K I L + +L+ S + KAL+++E++K
Sbjct: 653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS 712
Query: 179 ---ERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDL 235
V+T N+LI L + +A+E+ EM G+ P +T+ +L A D+
Sbjct: 713 IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV 772
Query: 236 GFEIFQSMTRDYGIEPQIEHYGCIVDLLSR 265
G ++ D GI+P + CI L R
Sbjct: 773 GLDLLSQAKED-GIKPNLVMCRCITGLCLR 801
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 1e-13
Identities = 51/202 (25%), Positives = 89/202 (44%), Gaps = 40/202 (19%)
Query: 157 LINMYSRCGDIDKALQVFEEMK----ERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQG 212
LI+ ++ G +D +VF EM E +V T+ +LI G A G+ +A + M ++
Sbjct: 478 LISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN 537
Query: 213 IRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEA 272
++P +V F +++AC G VD F++ M E
Sbjct: 538 VKPDRVVFNALISACGQSGAVDRAFDVLAEMK-------------------------AET 572
Query: 273 YDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGT---YVLLSNAY 329
+ I PDHI +G+L+ AC G++ +++ + + GT Y + N+
Sbjct: 573 H------PIDPDHITVGALMKACANAGQVDRAKEVYQMIH--EYNIKGTPEVYTIAVNSC 624
Query: 330 ASSGKWKEAVQIRAKMKEAGVQ 351
+ G W A+ I MK+ GV+
Sbjct: 625 SQKGDWDFALSIYDDMKKKGVK 646
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 1e-11
Identities = 40/157 (25%), Positives = 76/157 (48%), Gaps = 3/157 (1%)
Query: 81 TVCWTAMIDGLVRNGEMARALDLFREMQ-RDNVRPNEVTIVCVLSACSQLGALELGRWIH 139
++C + I+ LV G AL+LF ++ T ++ AC L ++ + ++
Sbjct: 89 SLC--SQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVY 146
Query: 140 SYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSI 199
++ + + + ++ M+ +CG + A ++F+EM ER++ ++ ++I GL G
Sbjct: 147 WHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYR 206
Query: 200 EAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLG 236
EA +FREM G TFV +L A + G G
Sbjct: 207 EAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 1e-11
Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 10/163 (6%)
Query: 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYV 61
G+EIH VL+ G+ + L++LY +CG A F+ + DVV+ +++ YV
Sbjct: 508 GKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK--DVVSWNILLTGYV 565
Query: 62 EHGLVENAFEVFSR-VKVK---DTVCWTAMIDGLVRNGEMARALDLFREMQRD-NVRPNE 116
HG A E+F+R V+ D V + +++ R+G + + L+ F M+ ++ PN
Sbjct: 566 AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625
Query: 117 VTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALIN 159
CV+ + G L ++++ K I + V GAL+N
Sbjct: 626 KHYACVVDLLGRAGKLTEA---YNFINKMPITPDPAVWGALLN 665
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 2e-11
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 79 KDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQ 128
D V + +IDG + G++ AL LF EM++ ++PN T ++ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 2e-10
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 181 DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSH 229
DV TYN+LI G G+ EA+++F EM +GI+P T+ +++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 4e-10
Identities = 44/196 (22%), Positives = 94/196 (47%), Gaps = 15/196 (7%)
Query: 177 MKERDVTTYNSLIAGLAMHGRSIE-AVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDL 235
++ ++T+N L++ A + I+ A+ + R + G++ + +++ C+ G VD
Sbjct: 432 IRNPTLSTFNMLMSVCA-SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA 490
Query: 236 GFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEE---AYDFITNMKIAPDHIMLGSLL 292
FE+F M + G+E + +G ++D +R G+ + AY + + + PD ++ +L+
Sbjct: 491 MFEVFHEMV-NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 549
Query: 293 SACKIHGKLQLGEQIAKRLLDCRS------ADSGTYVLLSNAYASSGKWKEAVQIRAKMK 346
SAC G + + L + ++ D T L A A++G+ A ++ +
Sbjct: 550 SACGQSGAVDRAFDV---LAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606
Query: 347 EAGVQKEPGCSSIEVN 362
E ++ P +I VN
Sbjct: 607 EYNIKGTPEVYTIAVN 622
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 5e-09
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 4/42 (9%)
Query: 156 ALINMYSRCGDIDKALQVFEEMKER----DVTTYNSLIAGLA 193
LI+ Y + G +++AL++F EMK+R +V TY+ LI GL
Sbjct: 8 TLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-06
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 82 VCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNE 116
V + +IDGL + G + AL+LF+EM+ + P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 2e-06
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 82 VCWTAMIDGLVRNGEMARALDLFREMQRDNV 112
V + ++I G + G++ AL+LF+EM+ V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 4e-06
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 184 TYNSLIAGLAMHGRSIEAVEMFREMINQGIRPT 216
TYN+LI GL GR EA+E+F+EM +GI P
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 7e-06
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 184 TYNSLIAGLAMHGRSIEAVEMFREMINQGI 213
TYNSLI+G G+ EA+E+F+EM +G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 2e-05
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 179 ERDVTTYNSLIAGLAMHGRSIEAVEMFREM 208
+ DV TYN+LI GL GR EAVE+ EM
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 4e-05
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 49 DVVASTVMINCYVEHGLVENAFEVFSRVKVK----DTVCWTAMIDGLVR 93
DVV +I+ Y + G VE A ++F+ +K + + ++ +IDGL +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (95), Expect = 5e-05
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 80 DTVCWTAMIDGLVRNGEMARALDLFREMQ 108
D V + +IDGL R G + A++L EM+
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 7e-05
Identities = 12/27 (44%), Positives = 22/27 (81%)
Query: 156 ALINMYSRCGDIDKALQVFEEMKERDV 182
+LI+ Y + G +++AL++F+EMKE+ V
Sbjct: 5 SLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 9e-05
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 81 TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRP 114
+ A++ L + G+ AL + EM+ ++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 3e-04
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 156 ALINMYSRCGDIDKALQVFEEMKERDVT 183
AL+ ++ GD D AL V EEMK +
Sbjct: 6 ALLLALAKAGDPDLALAVLEEMKASGLK 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 4e-04
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 156 ALINMYSRCGDIDKALQVFEEMKERDV 182
LI+ + G +++AL++F+EMKER +
Sbjct: 5 TLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 488 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.98 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.93 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.83 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.83 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.81 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.81 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.79 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.79 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.78 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.75 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.71 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.68 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.68 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.64 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.64 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.63 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.57 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.55 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.55 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.55 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.54 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.54 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.54 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.51 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.5 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.49 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.49 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.48 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.43 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.42 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.41 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.4 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.4 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.38 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.37 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.37 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.35 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.35 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.35 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.34 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.34 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.34 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.31 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.3 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.29 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.28 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.27 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.25 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.25 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.22 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.2 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.18 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.17 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.16 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.15 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.11 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.11 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.09 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.08 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.07 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.04 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.04 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.95 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.95 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.94 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.94 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.92 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.91 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.89 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.85 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.84 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.83 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.82 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.8 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.8 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.75 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.75 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.75 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.75 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.74 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.7 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.67 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.67 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.65 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.64 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.62 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.62 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.59 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.59 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.58 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.55 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.54 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.54 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.5 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.49 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.49 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.48 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.44 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.44 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.41 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.41 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.4 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.4 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.39 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.37 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.36 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.34 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.34 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.32 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.32 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.3 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.29 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.28 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.28 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.25 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.24 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.23 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.22 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.21 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.21 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.19 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.19 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.18 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.16 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.16 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.16 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.09 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.08 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.05 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.97 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.91 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.89 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.89 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.87 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.8 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.78 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.78 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.76 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.75 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.74 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.71 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.68 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.68 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.63 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.59 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.58 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.56 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.56 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.55 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.55 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.55 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.52 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.51 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.5 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.5 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.48 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.45 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.44 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.43 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.43 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.42 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.42 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.41 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.38 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.35 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.31 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.27 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.27 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.23 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.23 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.23 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.22 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.22 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.21 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.21 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.19 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.18 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.16 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.14 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.12 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.12 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.12 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.11 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.07 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.06 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.05 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.03 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.98 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.94 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.86 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.83 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.8 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.8 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.8 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.75 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.69 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.6 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.54 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.48 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.47 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.47 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.44 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.36 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.33 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.29 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.28 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.15 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.13 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.02 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.02 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.02 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.0 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.99 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.94 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.86 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.81 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 95.8 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.7 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.67 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.66 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.65 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.45 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.44 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.26 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.16 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.14 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.97 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.9 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.83 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.77 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.76 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.73 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.62 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.56 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 94.48 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.42 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.36 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.24 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.23 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.2 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.18 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.11 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.0 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.98 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.95 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.88 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.7 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 93.69 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.47 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.26 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.2 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.87 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.85 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.84 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.81 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 92.79 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.66 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.37 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.25 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.18 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.98 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 91.96 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 91.94 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.93 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.91 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 91.75 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.7 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 91.63 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 91.53 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.53 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.52 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.3 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 91.05 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 90.97 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.3 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 90.01 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 89.9 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 89.88 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.85 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.53 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 89.42 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 89.26 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 88.8 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.73 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.21 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.02 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 87.96 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 87.47 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 87.3 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 87.0 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 86.8 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 86.67 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 86.59 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 86.59 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.41 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 86.34 | |
| PRK09687 | 280 | putative lyase; Provisional | 85.75 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 85.62 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 85.38 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.37 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 85.21 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 85.2 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 85.02 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 84.95 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.87 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.68 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 84.54 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.18 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 84.06 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 83.88 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.81 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 83.8 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 83.36 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 83.17 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 82.78 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 82.71 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 82.65 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 82.4 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.34 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 82.2 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 81.06 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 80.49 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 80.16 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 80.08 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-109 Score=867.75 Aligned_cols=486 Identities=38% Similarity=0.671 Sum_probs=471.5
Q ss_pred HhHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHH---------------------
Q 036287 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY--------------------- 60 (488)
Q Consensus 2 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~--------------------- 60 (488)
|+++|..|++.|+.||..++|.|+++|+++|++++|.++|++|++++ .++||++|.+|
T Consensus 142 a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~-~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~ 220 (697)
T PLN03081 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERN-LASWGTIIGGLVDAGNYREAFALFREMWEDGS 220 (697)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCC-eeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence 68999999999999999999999999999999999999999999876 77777777666
Q ss_pred -------------------------------------------------HHcCCHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 036287 61 -------------------------------------------------VEHGLVENAFEVFSRVKVKDTVCWTAMIDGL 91 (488)
Q Consensus 61 -------------------------------------------------~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 91 (488)
+++|++++|.++|+.|+++|+++||+||.+|
T Consensus 221 ~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y 300 (697)
T PLN03081 221 DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGY 300 (697)
T ss_pred CCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHH
Confidence 5566666666677777778999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 036287 92 VRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKAL 171 (488)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 171 (488)
+++|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|..|.+.|++||..++++|+++|+++|++++|.
T Consensus 301 ~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~ 380 (697)
T PLN03081 301 ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380 (697)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCccc
Q 036287 172 QVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEP 251 (488)
Q Consensus 172 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 251 (488)
++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+++|+.|
T Consensus 381 ~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p 460 (697)
T PLN03081 381 NVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP 460 (697)
T ss_pred HHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998789999
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhc
Q 036287 252 QIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYAS 331 (488)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 331 (488)
+..+|++|+++|++.|++++|.+++++|++.|+..+|++|+.+|..+|+++.|..+++++.+.+|.+..+|..|+++|++
T Consensus 461 ~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~ 540 (697)
T PLN03081 461 RAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNS 540 (697)
T ss_pred CccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCccCCCcccccccchh
Q 036287 332 SGKWKEAVQIRAKMKEAGVQKEPGCSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDW 411 (488)
Q Consensus 332 ~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~ 411 (488)
.|+|++|.+++++|+++|+++.|++||+++++.+|.|++||.+||+.++++++++++..+|++.||.||+..++|+++++
T Consensus 541 ~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~ 620 (697)
T PLN03081 541 SGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDED 620 (697)
T ss_pred CCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhchHHHHHHHhhcCCCCCCcEEEEccccccCCcchhhHHHhhhcCceEEEecCCcccccccCccCCCCCC
Q 036287 412 EKEWALAIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFENGTCSCGDYW 488 (488)
Q Consensus 412 ~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~s~~~~~~i~~~d~~~~h~~~~g~csc~~~w 488 (488)
+|+..+.+||||||+||||+++|||+||||+||||+|+|||+++|+||++++|+|||||.+|||||+||+|||+|||
T Consensus 621 ~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 621 EEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred HHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-103 Score=839.05 Aligned_cols=481 Identities=40% Similarity=0.752 Sum_probs=463.6
Q ss_pred HhHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHH---------------------
Q 036287 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY--------------------- 60 (488)
Q Consensus 2 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~--------------------- 60 (488)
|+++|+.|++.|+.||..+||+|+.+|+++|++++|.++|++|..++ .++||++|.+|
T Consensus 307 a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d-~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~ 385 (857)
T PLN03077 307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKD-AVSWTAMISGYEKNGLPDKALETYALMEQDNV 385 (857)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 78999999999999999999999999999999999999999999877 78888888777
Q ss_pred -------------------------------------------------HHcCCHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 036287 61 -------------------------------------------------VEHGLVENAFEVFSRVKVKDTVCWTAMIDGL 91 (488)
Q Consensus 61 -------------------------------------------------~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 91 (488)
+++|++++|.++|++|.++|+++||+||.+|
T Consensus 386 ~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~ 465 (857)
T PLN03077 386 SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGL 465 (857)
T ss_pred CCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 5666677777777777778888999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 036287 92 VRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKAL 171 (488)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 171 (488)
.++|+.++|+.+|++|.. +++||..||++++.+|++.|+++.+.++|..+.+.|+.++..++++|+++|+++|++++|.
T Consensus 466 ~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~ 544 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW 544 (857)
T ss_pred HHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHH
Confidence 999999999999999986 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCccc
Q 036287 172 QVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEP 251 (488)
Q Consensus 172 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 251 (488)
++|+++ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|
T Consensus 545 ~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 545 NQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred HHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999997789999
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhc
Q 036287 252 QIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYAS 331 (488)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 331 (488)
+..+|++|+++|++.|++++|.+++++|+++||..+|++|+.+|..+|+.+.|+.+.+++.+++|+++..|..|.++|+.
T Consensus 624 ~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~ 703 (857)
T PLN03077 624 NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD 703 (857)
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCccCCCcccccccchh
Q 036287 332 SGKWKEAVQIRAKMKEAGVQKEPGCSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDW 411 (488)
Q Consensus 332 ~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~ 411 (488)
.|+|++|.++++.|+++|++|+||+|||++++.+|.|.+||.+||+.++||+.|+++..+|++.||.||+..+++ .+++
T Consensus 704 ~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~-~~~~ 782 (857)
T PLN03077 704 AGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMD-EIEV 782 (857)
T ss_pred CCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhcc-ccHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998884 4778
Q ss_pred hhhhhhhhchHHHHHHHhhcCCCCCCcEEEEccccccCCcchhhHHHhhhcCceEEEecCCcccccccCccCCCC
Q 036287 412 EKEWALAIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIVRDRNRFHHFENGTCSCGD 486 (488)
Q Consensus 412 ~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~s~~~~~~i~~~d~~~~h~~~~g~csc~~ 486 (488)
+|+..+.+||||||+||||+++|+|+||||+||||+|+|||+++|+||++++|+|||||.+|||||+||+|||+|
T Consensus 783 ~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 783 SKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999998
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-59 Score=499.75 Aligned_cols=454 Identities=22% Similarity=0.334 Sum_probs=391.6
Q ss_pred HhHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHH---------------------
Q 036287 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCY--------------------- 60 (488)
Q Consensus 2 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~--------------------- 60 (488)
|+++|+++++.|..++..++|+|+.+|+++|+++.|.++|++|++++ +++||++|.+|
T Consensus 105 a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d-~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~ 183 (857)
T PLN03077 105 GSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERD-LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV 183 (857)
T ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCC-eeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 67889999988888888888888888888888888888888888766 66776666666
Q ss_pred -------------------------------------------------HHcCCHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 036287 61 -------------------------------------------------VEHGLVENAFEVFSRVKVKDTVCWTAMIDGL 91 (488)
Q Consensus 61 -------------------------------------------------~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 91 (488)
+++|++++|.++|++|+.||+++||+||.+|
T Consensus 184 ~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~ 263 (857)
T PLN03077 184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGY 263 (857)
T ss_pred CCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHH
Confidence 5566677777777777788999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 036287 92 VRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKAL 171 (488)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 171 (488)
++.|++++|+++|.+|.+.|+.||..||++++.+|++.|+++.|.++|..+.+.|+.||..+|++|+++|+++|++++|.
T Consensus 264 ~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~ 343 (857)
T PLN03077 264 FENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAE 343 (857)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCccc
Q 036287 172 QVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEP 251 (488)
Q Consensus 172 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 251 (488)
++|++|.++|+++||+||.+|.+.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..+.+. |+.|
T Consensus 344 ~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~~ 422 (857)
T PLN03077 344 KVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK-GLIS 422 (857)
T ss_pred HHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh-CCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999975 9999
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhc
Q 036287 252 QIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYAS 331 (488)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 331 (488)
+..+|+.||++|+++|++++|.++|++|. +||..+|++++.+|.+.|+.++|..+|++|.+..+||..+|..++.+|++
T Consensus 423 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~ 501 (857)
T PLN03077 423 YVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACAR 501 (857)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhh
Confidence 99999999999999999999999999996 46899999999999999999999999999987667788999999999999
Q ss_pred CCChHHHHHHHHHHHhCCCccCCceeEEEECCE----------------------EEEEEeCCCCCccHHHHHHHHHHHH
Q 036287 332 SGKWKEAVQIRAKMKEAGVQKEPGCSSIEVNNE----------------------IHEFILGDIRHPQREQIYKKMQELK 389 (488)
Q Consensus 332 ~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~l~~l~ 389 (488)
.|..+.+.+++..|.+.|+.++......+++.. ....+.|+..|++.+++.+ ++
T Consensus 502 ~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~----lf 577 (857)
T PLN03077 502 IGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVE----LF 577 (857)
T ss_pred hchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHH----HH
Confidence 999999999988888888876654332211100 0012345566777777775 88
Q ss_pred HHHHHcCccCCCcccccccchhhhhhhh---hhchHHHHHHHhhcCCCCCCcEEEEccccccCCcchhhHHHhhhcC
Q 036287 390 QIVKLEGYSPSTEVVLHDIEDWEKEWAL---AIHSERLAICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITK 463 (488)
Q Consensus 390 ~~m~~~g~~pd~~~~~~~~~~~~~~~~~---~~~~e~la~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~s~~~~ 463 (488)
++|.+.|+.||..|+..-+..+.+.+.+ ....+.+-..+|+.++..+.. ++++.+.++|+..+|.++|.+|+.
T Consensus 578 ~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~-~lv~~l~r~G~~~eA~~~~~~m~~ 653 (857)
T PLN03077 578 NRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA-CVVDLLGRAGKLTEAYNFINKMPI 653 (857)
T ss_pred HHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH-HHHHHHHhCCCHHHHHHHHHHCCC
Confidence 9999999999999986666555443332 222333444677665554444 689999999999999999999864
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-58 Score=479.71 Aligned_cols=462 Identities=22% Similarity=0.304 Sum_probs=399.3
Q ss_pred HhHHHHHHHHhC-CCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCC---CceeeHHHHHHHHHHcCCHHHHHHHHhhcC
Q 036287 2 GREIHGQVLKLG-LRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPEC---NDVVASTVMINCYVEHGLVENAFEVFSRVK 77 (488)
Q Consensus 2 ~~~i~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 77 (488)
|.+++..|...+ +.||..+|++++.+|++.++++.|.+++..|... +++.+||.++.+|+++|++++|.++|++|+
T Consensus 106 Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~ 185 (697)
T PLN03081 106 ALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP 185 (697)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC
Confidence 567889998765 7899999999999999999999999999998763 369999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHH
Q 036287 78 VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGAL 157 (488)
Q Consensus 78 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 157 (488)
.||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+.+++..+.+.|+.+|..++++|
T Consensus 186 ~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~L 265 (697)
T PLN03081 186 ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCAL 265 (697)
T ss_pred CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 036287 158 INMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGF 237 (488)
Q Consensus 158 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 237 (488)
+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.
T Consensus 266 i~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 345 (697)
T PLN03081 266 IDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAK 345 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC-C
Q 036287 238 EIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCR-S 316 (488)
Q Consensus 238 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p 316 (488)
+++..|.+. |+.||..+|+.|+++|+++|++++|.++|++|. +||..+|++|+.+|.++|+.++|.++|++|.+.+ .
T Consensus 346 ~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 346 QAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred HHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999975 999999999999999999999999999999996 5799999999999999999999999999999876 6
Q ss_pred CCchhHHHHHHHHhcCCChHHHHHHHHHHHh-CCCccCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHc
Q 036287 317 ADSGTYVLLSNAYASSGKWKEAVQIRAKMKE-AGVQKEPGCSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLE 395 (488)
Q Consensus 317 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~ 395 (488)
||..||..++.+|.+.|+.++|.++|+.|.+ .|+.|+....... +.+....++.+++++ +++ +.
T Consensus 424 Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l--------i~~l~r~G~~~eA~~----~~~---~~ 488 (697)
T PLN03081 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM--------IELLGREGLLDEAYA----MIR---RA 488 (697)
T ss_pred CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH--------HHHHHhcCCHHHHHH----HHH---HC
Confidence 6789999999999999999999999999986 5888876544332 234445677777765 333 45
Q ss_pred CccCCCcccccccchhhhhhhhhhchHHH-HHHHhhcCCCCCCcEEEEccccccCCcchhhHHHhhhcCceEEE------
Q 036287 396 GYSPSTEVVLHDIEDWEKEWALAIHSERL-AICYGLISTKPYTTIRVVKNLRVCNDCHSMIKLIANITKRKIIV------ 468 (488)
Q Consensus 396 g~~pd~~~~~~~~~~~~~~~~~~~~~e~l-a~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~s~~~~~~i~~------ 468 (488)
+..||..++..-+..+.+.+.+.. .++. ...+++.+...++.+.+++.+..+|+..+|.+++..|..+.+-.
T Consensus 489 ~~~p~~~~~~~Ll~a~~~~g~~~~-a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~ 567 (697)
T PLN03081 489 PFKPTVNMWAALLTACRIHKNLEL-GRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTW 567 (697)
T ss_pred CCCCCHHHHHHHHHHHHHcCCcHH-HHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeE
Confidence 788988764433333322221110 1111 11234433334556667888999999999999999998886532
Q ss_pred -ecCCcccccccCc
Q 036287 469 -RDRNRFHHFENGT 481 (488)
Q Consensus 469 -~d~~~~h~~~~g~ 481 (488)
.-.+..|.|-.|-
T Consensus 568 i~~~~~~~~f~~~d 581 (697)
T PLN03081 568 IEVKKQDHSFFSGD 581 (697)
T ss_pred EEECCeEEEEccCC
Confidence 2234567775553
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-57 Score=473.04 Aligned_cols=444 Identities=20% Similarity=0.312 Sum_probs=377.7
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHHhhCCCC---CceeeHHHHHHHHHHcCCHHHHHHHHhhcC----CCCHHHHHHHH
Q 036287 16 SNRSTRLKLVELYGKCGEFKDAMQLFDEMPEC---NDVVASTVMINCYVEHGLVENAFEVFSRVK----VKDTVCWTAMI 88 (488)
Q Consensus 16 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li 88 (488)
||..+|+.|+.+|++.|+++.|.++|+.|.+. +|..+|++||.+|+++|++++|.++|++|. .||..+||+||
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 78999999999999999999999999999874 368999999999999999999999999998 68999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH--cCCCCcHhHHHHHHHHHHhcCC
Q 036287 89 DGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGK--HRIDLNHIVGGALINMYSRCGD 166 (488)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~~~g~ 166 (488)
.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|..|.+ .|+.||..+|++|+++|+++|+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999986 6789999999999999999999
Q ss_pred HHHHHHHHHhccc----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHh
Q 036287 167 IDKALQVFEEMKE----RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQS 242 (488)
Q Consensus 167 ~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 242 (488)
+++|.++|++|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999986 567999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC-CCC
Q 036287 243 MTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM---KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCR-SAD 318 (488)
Q Consensus 243 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~ 318 (488)
|.+. |+.|+..+|+.||++|+++|++++|.++|++| ++.||..+|++|+.+|++.|++++|.+++++|.+.+ .||
T Consensus 675 M~k~-G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 675 ARKQ-GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 9975 99999999999999999999999999999999 689999999999999999999999999999999876 667
Q ss_pred chhHHHHHHHHhcCCChHHHHHHHHHHHhCCCccCCceeEEEEC-------------CEEEEEEeCCCC--CccHHHHHH
Q 036287 319 SGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIEVN-------------NEIHEFILGDIR--HPQREQIYK 383 (488)
Q Consensus 319 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~-------------~~~~~~~~~~~~--~~~~~~~~~ 383 (488)
..+|..|+.+|.+.|++++|.+++++|.+.|+.|+.......++ ..+..|-.|... .....+
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~--- 830 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSW--- 830 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHH---
Confidence 89999999999999999999999999999999998754433221 011111111100 111223
Q ss_pred HHHHHHHHHHHcCccCCCcccccccchhhhhhhhhhchHHHHHHHhhcCCCCCCc--EEEEccccccCCcchhhHHHhhh
Q 036287 384 KMQELKQIVKLEGYSPSTEVVLHDIEDWEKEWALAIHSERLAICYGLISTKPYTT--IRVVKNLRVCNDCHSMIKLIANI 461 (488)
Q Consensus 384 ~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~--~~~~~n~~~~~~~~~~~~~~s~~ 461 (488)
.-.++++|.+.|+.||..++...+....+... ....+.+-..+++.+.+++.. ..+++.+.. .-++|..++..|
T Consensus 831 -Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~-~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~--~~~~A~~l~~em 906 (1060)
T PLN03218 831 -ALMVYRETISAGTLPTMEVLSQVLGCLQLPHD-ATLRNRLIENLGISADSQKQSNLSTLVDGFGE--YDPRAFSLLEEA 906 (1060)
T ss_pred -HHHHHHHHHHCCCCCCHHHHHHHHHHhccccc-HHHHHHHHHHhccCCCCcchhhhHHHHHhhcc--ChHHHHHHHHHH
Confidence 33589999999999999887555422112111 122333444566666655432 234554421 125799999988
Q ss_pred cCceEE
Q 036287 462 TKRKII 467 (488)
Q Consensus 462 ~~~~i~ 467 (488)
..+.|+
T Consensus 907 ~~~Gi~ 912 (1060)
T PLN03218 907 ASLGVV 912 (1060)
T ss_pred HHcCCC
Confidence 877554
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-54 Score=451.30 Aligned_cols=419 Identities=18% Similarity=0.281 Sum_probs=361.8
Q ss_pred HhHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCC---CceeeHHHHHHHHHHcCCHHHHHHHHhhcC-
Q 036287 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPEC---NDVVASTVMINCYVEHGLVENAFEVFSRVK- 77 (488)
Q Consensus 2 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~- 77 (488)
|.++|+.|.+.|+.||..+||+||.+|+++|++++|.++|++|.+. +|..+|++||.+|++.|++++|.++|+.|.
T Consensus 456 A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~ 535 (1060)
T PLN03218 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999863 359999999999999999999999999996
Q ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHh
Q 036287 78 ---VKDTVCWTAMIDGLVRNGEMARALDLFREMQR--DNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHI 152 (488)
Q Consensus 78 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 152 (488)
.||..+||.||.+|++.|++++|.++|++|.. .|+.||..||++++.+|++.|++++|.++|+.|.+.|+.|+..
T Consensus 536 ~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ 615 (1060)
T PLN03218 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChH
Confidence 68999999999999999999999999999986 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccc----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 036287 153 VGGALINMYSRCGDIDKALQVFEEMKE----RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACS 228 (488)
Q Consensus 153 ~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 228 (488)
+|+++|.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..+|++++.+|+
T Consensus 616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~ 695 (1060)
T PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695 (1060)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999985 7999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHHhCChhHHH
Q 036287 229 HGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM---KIAPDHIMLGSLLSACKIHGKLQLGE 305 (488)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~ 305 (488)
+.|++++|.++|+.|.+. ++.||..+|+.||.+|++.|++++|.++|++| ++.||..+|++++.+|.+.|+++.|.
T Consensus 696 k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~ 774 (1060)
T PLN03218 696 NAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGL 774 (1060)
T ss_pred hCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999864 99999999999999999999999999999998 79999999999999999999999999
Q ss_pred HHHHHHHhcC-CCCchhHHHHHHHHhc----C-------------------CChHHHHHHHHHHHhCCCccCCceeEEEE
Q 036287 306 QIAKRLLDCR-SADSGTYVLLSNAYAS----S-------------------GKWKEAVQIRAKMKEAGVQKEPGCSSIEV 361 (488)
Q Consensus 306 ~~~~~~~~~~-p~~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~m~~~g~~~~~~~s~~~~ 361 (488)
+++++|.+.+ .+|..+|..|+.+|.+ + +..++|..+|++|.+.|+.|+..+....+
T Consensus 775 ~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL 854 (1060)
T PLN03218 775 DLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVL 854 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHH
Confidence 9999999976 5677899999876532 2 12367999999999999999866544333
Q ss_pred CCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCccCCCcccccccchhh--hhhhhhhchHHHHHHHhhcCCCC
Q 036287 362 NNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWE--KEWALAIHSERLAICYGLISTKP 435 (488)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~--~~~~~~~~~e~la~~~~~~~~~~ 435 (488)
... . .... ......+++.|...+..|+..++..-++... .+..+..+.| +...|+.+.-.
T Consensus 855 ~cl----~----~~~~----~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~e--m~~~Gi~p~~~ 916 (1060)
T PLN03218 855 GCL----Q----LPHD----ATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEE--AASLGVVPSVS 916 (1060)
T ss_pred HHh----c----cccc----HHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHH--HHHcCCCCCcc
Confidence 211 0 1111 2233456666766677776665432222211 1123333332 44566665553
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.7e-33 Score=215.81 Aligned_cols=106 Identities=64% Similarity=1.020 Sum_probs=96.5
Q ss_pred ceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCccCCCcccccccchhhh--------hhhhhhchHHHHH
Q 036287 355 GCSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHDIEDWEK--------EWALAIHSERLAI 426 (488)
Q Consensus 355 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~~~e~la~ 426 (488)
+++|+.+ |.|++||.+||+. ++..++...||.|++..++|+++++++ +..+.+||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6788866 9999999999998 366778889999999999998877655 5688999999999
Q ss_pred HHhhcCCCCCCcEEEEccc-cccCCcchhhHHHhhhcCceEEEecCCcccccc
Q 036287 427 CYGLISTKPYTTIRVVKNL-RVCNDCHSMIKLIANITKRKIIVRDRNRFHHFE 478 (488)
Q Consensus 427 ~~~~~~~~~~~~~~~~~n~-~~~~~~~~~~~~~s~~~~~~i~~~d~~~~h~~~ 478 (488)
|||++++ ||+||+ |||+|||+++|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999988 899999 999999999999999999999999999999996
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-22 Score=218.51 Aligned_cols=341 Identities=11% Similarity=0.131 Sum_probs=271.3
Q ss_pred HhHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC--
Q 036287 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK-- 77 (488)
Q Consensus 2 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~-- 77 (488)
+.+++..+++.+ +.+..++..+...|.+.|+.++|...|+++.. +++...+..++..|.+.|++++|..+++.+.
T Consensus 518 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 596 (899)
T TIGR02917 518 AIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA 596 (899)
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 456777777655 45677888888999999999999999888754 3356678888888999999999999988875
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHH
Q 036287 78 -VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGA 156 (488)
Q Consensus 78 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 156 (488)
+.+..+|..+...|.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|..++..+.+.. +.+...+..
T Consensus 597 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 674 (899)
T TIGR02917 597 APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIG 674 (899)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 3467788889999999999999999999888754 4466777888888888899999999998888764 456778888
Q ss_pred HHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 036287 157 LINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLV 233 (488)
Q Consensus 157 li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 233 (488)
++..+...|++++|.++++.+.+ .+...+..+...+...|++++|+..|+++... .|+..++..+..++...|+.
T Consensus 675 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 675 LAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCH
Confidence 88888888999999888888765 35667788888888888888888888888875 45556777788888888888
Q ss_pred HHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 036287 234 DLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KI-APDHIMLGSLLSACKIHGKLQLGEQIAKRL 311 (488)
Q Consensus 234 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 311 (488)
++|.+.+..+.+ ..+.+...+..+...|.+.|++++|.+.|+++ .. +++..++..+...+...|+ ++|...++++
T Consensus 753 ~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~ 829 (899)
T TIGR02917 753 AEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKA 829 (899)
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 888888888875 33455777888888888888888888888887 33 3457778888888888888 7788888888
Q ss_pred HhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 036287 312 LDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 312 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 350 (488)
.+..|.++..+..++.+|...|++++|.+.++++.+.+.
T Consensus 830 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 830 LKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 888888888888888888888888888888888877654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-22 Score=216.17 Aligned_cols=339 Identities=13% Similarity=0.088 Sum_probs=294.3
Q ss_pred HhHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC--
Q 036287 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK-- 77 (488)
Q Consensus 2 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~-- 77 (488)
|.+.+..+++.. +.+...+..+...|.+.|++++|.+.|+.+.. +++..++..+...+.+.|+.++|..+|+++.
T Consensus 484 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 562 (899)
T TIGR02917 484 AREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL 562 (899)
T ss_pred HHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 566777777654 44566788899999999999999999998865 3457889999999999999999999999874
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHH
Q 036287 78 -VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGA 156 (488)
Q Consensus 78 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 156 (488)
+.+...+..++..|.+.|++++|+.+++++.+.. +.+..++..+..++...|++++|...++.+.+.. +.+...+..
T Consensus 563 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 640 (899)
T TIGR02917 563 NPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLL 640 (899)
T ss_pred CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 3456788899999999999999999999998763 5678899999999999999999999999998875 456778889
Q ss_pred HHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 036287 157 LINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLV 233 (488)
Q Consensus 157 li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 233 (488)
+..+|.+.|++++|..+|+++.+ .+..+|..++..+...|++++|.++++.+.+.+ +++...+..+...+...|++
T Consensus 641 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~ 719 (899)
T TIGR02917 641 LADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDY 719 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCH
Confidence 99999999999999999998764 457899999999999999999999999998874 55667788888899999999
Q ss_pred HHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 036287 234 DLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM--KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRL 311 (488)
Q Consensus 234 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 311 (488)
++|.+.|..+.. ..|+..++..+..++.+.|++++|.+.++++ ..+.+..++..+...|...|+.++|...++++
T Consensus 720 ~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 720 PAAIQAYRKALK---RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred HHHHHHHHHHHh---hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 999999999884 3566678888999999999999999999888 33346788888999999999999999999999
Q ss_pred HhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 312 LDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 312 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
++..|+++.++..++.+|...|+ .+|...++++.+.
T Consensus 797 ~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 797 VKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 99999999999999999999999 8899999988765
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.3e-21 Score=186.60 Aligned_cols=294 Identities=13% Similarity=0.156 Sum_probs=222.1
Q ss_pred HHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcC
Q 036287 57 INCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPN---EVTIVCVLSACSQLG 130 (488)
Q Consensus 57 i~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~ 130 (488)
...+...|++++|...|+++. +.+..+|..+...+...|++++|+.+++.+...+..++ ..++..+...+...|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 344566677777777777765 22445677777788888888888888887776432221 245666777777888
Q ss_pred chHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCC--------HHHHHHHHHHHHhcCChhHHH
Q 036287 131 ALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD--------VTTYNSLIAGLAMHGRSIEAV 202 (488)
Q Consensus 131 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~ 202 (488)
+++.|..++..+.+.. +.+..++..++.+|.+.|++++|.+.|+.+.+.+ ...|..+...+.+.|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 8888888888877653 4456677778888888888888888888776421 123556777788888999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC--hhhHHHHHHHHHhcCChHHHHHHHHhC-
Q 036287 203 EMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ--IEHYGCIVDLLSRVGRPEEAYDFITNM- 279 (488)
Q Consensus 203 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m- 279 (488)
..|+++.+.. +.+...+..+...+.+.|++++|.++++.+.+. .|+ ..+++.++.+|.+.|++++|.+.++++
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9998888753 233456667778888889999999999888743 333 456788899999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhc---CCChHHHHHHHHHHHhCCCccCCce
Q 036287 280 KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYAS---SGKWKEAVQIRAKMKEAGVQKEPGC 356 (488)
Q Consensus 280 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~ 356 (488)
...|+...+..+...+.+.|++++|..+++++++..|++. .+..++..+.. .|+.+++..++++|.+++++++|.+
T Consensus 277 ~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 277 EEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 5667777778889999999999999999999999988774 66666666553 5689999999999999999998873
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=185.45 Aligned_cols=286 Identities=16% Similarity=0.128 Sum_probs=241.2
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCC--CceeeHHHHHHHHHHcCCHHHHHHHHhhcCCC-C------HHHHHHHHHHHHHc
Q 036287 24 LVELYGKCGEFKDAMQLFDEMPEC--NDVVASTVMINCYVEHGLVENAFEVFSRVKVK-D------TVCWTAMIDGLVRN 94 (488)
Q Consensus 24 li~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~------~~~~~~li~~~~~~ 94 (488)
+...+...|++++|...|.++.+. ++..+|..+...+...|++++|..+++.+... + ...|..++..|.+.
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344567889999999999999774 34668899999999999999999999987632 1 24688999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCc----HhHHHHHHHHHHhcCCHHHH
Q 036287 95 GEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLN----HIVGGALINMYSRCGDIDKA 170 (488)
Q Consensus 95 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A 170 (488)
|++++|+.+|+++.+.. +++..++..++..+...|++++|.+.++.+.+.+..+. ...+..+...|.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999998763 45778899999999999999999999999988764332 22456678889999999999
Q ss_pred HHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhccccc
Q 036287 171 LQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDY 247 (488)
Q Consensus 171 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 247 (488)
.+.|+++.+ .+...+..+...|.+.|++++|.++|+++.+.+......++..+..+|...|++++|.+.++.+.+
T Consensus 200 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~-- 277 (389)
T PRK11788 200 RALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE-- 277 (389)
T ss_pred HHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 999999864 345688889999999999999999999999854333345678889999999999999999999885
Q ss_pred CcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHH---hCChhHHHHHHHHHHh
Q 036287 248 GIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPDHIMLGSLLSACKI---HGKLQLGEQIAKRLLD 313 (488)
Q Consensus 248 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~ 313 (488)
..|+...+..++..+.+.|++++|..+++++ ...|+..+++.++..+.. .|+.+++..+++++.+
T Consensus 278 -~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 278 -EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred -hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 3677777789999999999999999999877 677999999988887765 5688899999998886
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7e-18 Score=174.16 Aligned_cols=319 Identities=12% Similarity=0.033 Sum_probs=243.6
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCH
Q 036287 23 KLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEM 97 (488)
Q Consensus 23 ~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~ 97 (488)
..+....+.|++++|..+++.... +++...+..++.+....|++++|...|+++. +.+...|..+...+.+.|++
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Confidence 345566778999999888887655 3346677777788888999999999998875 33567788888888999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036287 98 ARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEM 177 (488)
Q Consensus 98 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 177 (488)
++|+..|+++.+.. +.+...+..+..++...|++++|...+..+...... +...+..+. .+...|++++|...++.+
T Consensus 127 ~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~~-~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 127 ATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATCL-SFLNKSRLPEDHDLARAL 203 (656)
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHHH-HHHHcCCHHHHHHHHHHH
Confidence 99999999888753 345667777888888899999999988887766433 333333333 477889999999888886
Q ss_pred ccC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH----HHHHHHhcccccCc
Q 036287 178 KER----DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDL----GFEIFQSMTRDYGI 249 (488)
Q Consensus 178 ~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~~~~~~~~ 249 (488)
.+. +...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++ |...|+.+.+ +
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l 279 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ---F 279 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh---h
Confidence 543 23344555677888899999999999888753 3345566677788888888875 7888888874 3
Q ss_pred ccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHH
Q 036287 250 EPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLS 326 (488)
Q Consensus 250 ~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 326 (488)
.|+ ...+..+...+.+.|++++|...+++. ...|+ ...+..+..++...|++++|...++++.+..|.++..+..++
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a 359 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAA 359 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 444 667888888899999999999888887 44554 566777888888899999999999999888888766666677
Q ss_pred HHHhcCCChHHHHHHHHHHHhC
Q 036287 327 NAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 327 ~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
.++...|++++|...+++..+.
T Consensus 360 ~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 8888899999999998887654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.3e-18 Score=173.57 Aligned_cols=340 Identities=11% Similarity=0.044 Sum_probs=256.0
Q ss_pred hHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC---
Q 036287 3 REIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK--- 77 (488)
Q Consensus 3 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--- 77 (488)
...+...++ +.|+...|..+...|.+.|++++|++.++...+ +++..+|..+..+|...|++++|+..|....
T Consensus 147 i~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~ 224 (615)
T TIGR00990 147 IKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIID 224 (615)
T ss_pred HHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 345555554 567778888888999999999999999888765 3356788888899999999999876554321
Q ss_pred ------------------------------CCCHHHHHHHHHH--------------------------H----------
Q 036287 78 ------------------------------VKDTVCWTAMIDG--------------------------L---------- 91 (488)
Q Consensus 78 ------------------------------~~~~~~~~~li~~--------------------------~---------- 91 (488)
.++..++..+... +
T Consensus 225 ~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~ 304 (615)
T TIGR00990 225 GFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPES 304 (615)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHh
Confidence 0011111111000 0
Q ss_pred HHcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHH
Q 036287 92 VRNGEMARALDLFREMQRDN-VRP-NEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDK 169 (488)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 169 (488)
...+++++|++.|++....+ ..| +...+..+...+...|++++|...++..++.. +.....+..+..+|...|++++
T Consensus 305 ~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~e 383 (615)
T TIGR00990 305 KADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDK 383 (615)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 11256888999998888754 233 34567777778888999999999999998864 3346678888899999999999
Q ss_pred HHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccc
Q 036287 170 ALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRD 246 (488)
Q Consensus 170 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 246 (488)
|...|++..+ .+...|..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...|+...+.
T Consensus 384 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 384 AEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999988764 457789999999999999999999999998852 334556667778888999999999999998752
Q ss_pred cCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHHhCChhHHHHHHHHHHhcCCC
Q 036287 247 YGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPDH-I-------MLGSLLSACKIHGKLQLGEQIAKRLLDCRSA 317 (488)
Q Consensus 247 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 317 (488)
.+.+...++.+..+|...|++++|++.|++. ...|+. . .++..+..+...|++++|...++++++.+|.
T Consensus 463 --~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 463 --FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred --CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 2334778888999999999999999999886 444421 1 1222223334468999999999999999998
Q ss_pred CchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 318 DSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 318 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
+..++..++.+|...|++++|.+.|++..+.
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8888999999999999999999999988653
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-18 Score=165.42 Aligned_cols=323 Identities=17% Similarity=0.204 Sum_probs=269.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC------------------
Q 036287 18 RSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK------------------ 77 (488)
Q Consensus 18 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~------------------ 77 (488)
..+|..+.+.+-..|++++|..+++.+.+ ++.+..|..+..++...|+.+.|...|.+..
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLK 195 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHH
Confidence 45677888888899999999999998776 3357788888888888888777777766542
Q ss_pred ------------------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCchHHHHH
Q 036287 78 ------------------VKD-TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPN-EVTIVCVLSACSQLGALELGRW 137 (488)
Q Consensus 78 ------------------~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~ 137 (488)
+|. .++|+.|...+-.+|+...|++.|++..+. .|+ ...|..+...|...+.++.|..
T Consensus 196 a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHH
Confidence 121 345777777778888888888888888774 454 4677888888888888888888
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 036287 138 IHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE--R-DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIR 214 (488)
Q Consensus 138 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 214 (488)
.+....... +....++..|...|-..|.+|.|...+++..+ | -..+|+.|..++-..|+..+|.+.|.+.... .
T Consensus 274 ~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~ 350 (966)
T KOG4626|consen 274 CYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--C 350 (966)
T ss_pred HHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--C
Confidence 888776653 34466777788888899999999999998775 3 3478999999999999999999999999884 4
Q ss_pred CC-HHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHH
Q 036287 215 PT-KVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGS 290 (488)
Q Consensus 215 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ 290 (488)
|+ ....+.|..++...|.+++|..+|.... .+.|. ....+.|...|-+.|++++|+..+++. .++|+ ...++.
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~N 427 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSN 427 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHh
Confidence 44 4678889999999999999999999887 45666 677899999999999999999999988 88998 688999
Q ss_pred HHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 291 LLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 291 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
+...|...|+.+.|.+.+.+++..+|.-..++..|...|-.+|+..+|+.-+++..+.
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999999999999988764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.1e-17 Score=167.76 Aligned_cols=328 Identities=13% Similarity=0.064 Sum_probs=256.6
Q ss_pred HhHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC--
Q 036287 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK-- 77 (488)
Q Consensus 2 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~-- 77 (488)
+..+....+.....+ ......|+......|++++|...|+++.. +++...|..+...+.+.|++++|...|++..
T Consensus 61 A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l 139 (656)
T PRK15174 61 GLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA 139 (656)
T ss_pred hHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555555554333 33444555666779999999999999876 4567889999999999999999999999875
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHH
Q 036287 78 -VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGA 156 (488)
Q Consensus 78 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 156 (488)
+.+...|..+...+...|++++|+..++++..... .+...+.. +..+...|++++|...+..+.+....++......
T Consensus 140 ~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~ 217 (656)
T PRK15174 140 FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGL 217 (656)
T ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHH
Confidence 34677899999999999999999999998877542 23333333 3457889999999999999887754444555566
Q ss_pred HHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhH----HHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 036287 157 LINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIE----AVEMFREMINQGIRPTKVTFVGVLNACSH 229 (488)
Q Consensus 157 li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 229 (488)
+...+.+.|++++|...|++..+ .+...+..+...|...|++++ |+..|++..+.. +.+...+..+...+..
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~ 296 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIR 296 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 67889999999999999998765 467788899999999999986 899999999852 3345677888899999
Q ss_pred cCCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH-HHHHHHHHHHhCChhHHHH
Q 036287 230 GGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPDHIM-LGSLLSACKIHGKLQLGEQ 306 (488)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~-~~~ll~~~~~~g~~~~a~~ 306 (488)
.|++++|...++...+ ..|+ ...+..+..+|.+.|++++|.+.++++ ...|+... +..+..++...|+.++|..
T Consensus 297 ~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~ 373 (656)
T PRK15174 297 TGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAES 373 (656)
T ss_pred CCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999885 3454 566778899999999999999999988 45666444 4445677899999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 307 IAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 307 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
.++++++..|.+. ...+++|...+.+..+.
T Consensus 374 ~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 374 VFEHYIQARASHL------------PQSFEEGLLALDGQISA 403 (656)
T ss_pred HHHHHHHhChhhc------------hhhHHHHHHHHHHHHHh
Confidence 9999999988763 23445565555555443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-17 Score=157.59 Aligned_cols=299 Identities=15% Similarity=0.143 Sum_probs=255.9
Q ss_pred cCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHH
Q 036287 31 CGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVKVKD---TVCWTAMIDGLVRNGEMARALDLFR 105 (488)
Q Consensus 31 ~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~ 105 (488)
.|++++|...+-+..+ +.-.++|+.|.-.+...|++..|+.-|++...-| ..+|-.|...|...+.+++|+..|.
T Consensus 197 ~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~ 276 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYL 276 (966)
T ss_pred hcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHH
Confidence 4555555555444332 2256789999999999999999999999876433 5689999999999999999999999
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CC
Q 036287 106 EMQRDNVRPN-EVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RD 181 (488)
Q Consensus 106 ~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~ 181 (488)
+.... .|+ .+.+..+...|...|.++.|+..+++.++.. +.-...|+.|..+.-..|++.+|...+++... .-
T Consensus 277 rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h 353 (966)
T KOG4626|consen 277 RALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNH 353 (966)
T ss_pred HHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc
Confidence 98875 454 5778888888999999999999999999875 34477899999999999999999999999775 34
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHHHH
Q 036287 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPT-KVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCI 259 (488)
Q Consensus 182 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 259 (488)
..+.+.|...|...|..++|..+|....+ +.|. ...++.|...|-+.|++++|...++... .|+|+ ...|+.+
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~Nm 428 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNM 428 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhc
Confidence 57889999999999999999999999988 5555 4568889999999999999999999988 78898 6899999
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHH
Q 036287 260 VDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKE 337 (488)
Q Consensus 260 i~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 337 (488)
...|...|+.+.|.+.+.+. .+.|. ....+.|.+.+...|++.+|+..++..++++|+-+.+|-.++.+.---.+|.+
T Consensus 429 Gnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 429 GNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred chHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 99999999999999999887 78887 67889999999999999999999999999999999999988877665556655
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-16 Score=174.35 Aligned_cols=184 Identities=14% Similarity=0.104 Sum_probs=126.4
Q ss_pred HHHHHhcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHH----------
Q 036287 158 INMYSRCGDIDKALQVFEEMKE--R-DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPT-KVTFVGV---------- 223 (488)
Q Consensus 158 i~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l---------- 223 (488)
...|...|++++|.+.|++..+ | +...+..+...|.+.|++++|...|+++.+. .|+ ...+..+
T Consensus 468 a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~ 545 (1157)
T PRK11447 468 AEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRD 545 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCH
Confidence 3445556777777777766553 2 3445556666677777777777777766653 222 2222222
Q ss_pred ----------------------------------HHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCCh
Q 036287 224 ----------------------------------LNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRP 269 (488)
Q Consensus 224 ----------------------------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 269 (488)
...+...|+.++|..+++. .+++...+..+...|.+.|++
T Consensus 546 ~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~ 619 (1157)
T PRK11447 546 RAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDY 619 (1157)
T ss_pred HHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCH
Confidence 2334444555555555441 133455667788888888999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 270 EEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 270 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
++|++.|++. ...| +...+..+...+...|+.++|+..++.+.+..|+++..+..+..++...|++++|.++++.+.+
T Consensus 620 ~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 620 AAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 9999888887 4455 4778888888888899999999999988888888888888888888899999999999998876
Q ss_pred CC
Q 036287 348 AG 349 (488)
Q Consensus 348 ~g 349 (488)
..
T Consensus 700 ~~ 701 (1157)
T PRK11447 700 QA 701 (1157)
T ss_pred hC
Confidence 53
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=8e-16 Score=169.53 Aligned_cols=339 Identities=12% Similarity=0.075 Sum_probs=258.3
Q ss_pred hHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCC
Q 036287 3 REIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVKVKD 80 (488)
Q Consensus 3 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~ 80 (488)
.+.+..+++.. +.+...+..|...|.+.|++++|++.|++... +++...+..+...|. .++.++|..+++.++...
T Consensus 371 ~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~ 448 (1157)
T PRK11447 371 ERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQ 448 (1157)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHH
Confidence 44555555543 33555677788888888888888888888765 334556666666664 457788888887765321
Q ss_pred ------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCC
Q 036287 81 ------------TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRID 148 (488)
Q Consensus 81 ------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 148 (488)
...+..+...+...|++++|++.|++.++.. +-+...+..+...+.+.|++++|...++.+++.. +
T Consensus 449 ~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P 526 (1157)
T PRK11447 449 RRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-P 526 (1157)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C
Confidence 1234556777888999999999999998864 3356677788889999999999999999998764 3
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhcccC----CH---------HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 036287 149 LNHIVGGALINMYSRCGDIDKALQVFEEMKER----DV---------TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRP 215 (488)
Q Consensus 149 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 215 (488)
.+...+..+...+...|+.++|...++.+... +. ..+..+...+...|+.++|+.+++. .++
T Consensus 527 ~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~ 601 (1157)
T PRK11447 527 NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPP 601 (1157)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCC
Confidence 45555556666778899999999999987642 11 1123456678899999999999882 345
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 036287 216 TKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLS 293 (488)
Q Consensus 216 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~ 293 (488)
+...+..+...+...|+.++|...|+.+.+. -+.+...+..++..|...|++++|.+.++.. ...|+ ...+..+..
T Consensus 602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~ 679 (1157)
T PRK11447 602 STRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVAL 679 (1157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 5566777888899999999999999999853 2334788899999999999999999999987 44554 667777888
Q ss_pred HHHHhCChhHHHHHHHHHHhcCCCCc------hhHHHHHHHHhcCCChHHHHHHHHHHHh-CCCcc
Q 036287 294 ACKIHGKLQLGEQIAKRLLDCRSADS------GTYVLLSNAYASSGKWKEAVQIRAKMKE-AGVQK 352 (488)
Q Consensus 294 ~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~~ 352 (488)
++...|++++|.++++++++..|+++ ..+..+...+...|++++|.+.++.... .|+.|
T Consensus 680 ~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 680 AWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 89999999999999999998765443 3566678999999999999999998754 35543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-15 Score=159.55 Aligned_cols=342 Identities=7% Similarity=-0.013 Sum_probs=251.2
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC---C
Q 036287 4 EIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK---V 78 (488)
Q Consensus 4 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~ 78 (488)
+++....... +.+...+..+...+.+.|++++|..+|++..+ +++...+..++..+...|++++|...+++.. +
T Consensus 36 ~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P 114 (765)
T PRK10049 36 TVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAP 114 (765)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 4455554422 34455688899999999999999999998654 3456778888899999999999999998875 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHH------------------------
Q 036287 79 KDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALEL------------------------ 134 (488)
Q Consensus 79 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~------------------------ 134 (488)
.+.. |..+...+...|++++|+..++++.+.. +.+...+..+..++...+..+.
T Consensus 115 ~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~ 192 (765)
T PRK10049 115 DKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAA 192 (765)
T ss_pred CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3566 8888899999999999999999998863 2344444455555554454443
Q ss_pred ----------------------HHHHHHHHHHc-CCCCcHh--HHHH---HHHHHHhcCCHHHHHHHHHhcccCC---H-
Q 036287 135 ----------------------GRWIHSYMGKH-RIDLNHI--VGGA---LINMYSRCGDIDKALQVFEEMKERD---V- 182 (488)
Q Consensus 135 ----------------------a~~~~~~~~~~-g~~~~~~--~~~~---li~~y~~~g~~~~A~~~~~~~~~~~---~- 182 (488)
|.+.++.+.+. ...|+.. ...+ .+.++...|++++|++.|+++.+.+ +
T Consensus 193 ~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~ 272 (765)
T PRK10049 193 ELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP 272 (765)
T ss_pred HHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH
Confidence 33344444432 1122211 1111 1223456799999999999988632 1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHhcccccC----------c
Q 036287 183 TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRP---TKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYG----------I 249 (488)
Q Consensus 183 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~ 249 (488)
..-..+...|...|++++|+..|+++.+..... .......+..++...|++++|.++++.+.+... -
T Consensus 273 ~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~ 352 (765)
T PRK10049 273 WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTS 352 (765)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCC
Confidence 122225678999999999999999987643111 123455667788999999999999999875311 0
Q ss_pred ccC---hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHH
Q 036287 250 EPQ---IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVL 324 (488)
Q Consensus 250 ~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 324 (488)
.|+ ...+..+...+...|++++|+++++++ ...| +...+..+...+...|++++|++.++++++..|++...+..
T Consensus 353 ~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~ 432 (765)
T PRK10049 353 IPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVE 432 (765)
T ss_pred CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH
Confidence 122 234567788899999999999999998 4344 57888999999999999999999999999999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhC
Q 036287 325 LSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 325 l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
++..+...|++++|..+++.+.+.
T Consensus 433 ~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 433 QAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999764
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-15 Score=156.98 Aligned_cols=324 Identities=12% Similarity=-0.021 Sum_probs=246.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC-CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCC
Q 036287 21 RLKLVELYGKCGEFKDAMQLFDEMPE-CNDVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGE 96 (488)
Q Consensus 21 ~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~ 96 (488)
+..+...|.+.|++++|...|++... .++...|..+..+|.+.|++++|++.++... +.+..+|..+..+|...|+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 45677889999999999999998765 2347789999999999999999999999865 3356789999999999999
Q ss_pred HHHHHHHHHHHHHCCC----------------------------CC----CHHHHHHHHH--------------------
Q 036287 97 MARALDLFREMQRDNV----------------------------RP----NEVTIVCVLS-------------------- 124 (488)
Q Consensus 97 ~~~A~~~~~~m~~~g~----------------------------~p----~~~t~~~ll~-------------------- 124 (488)
+++|+.-|......+- .| ........+.
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEE 289 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccc
Confidence 9999876654432210 00 0000000000
Q ss_pred ---HH----------HhcCchHHHHHHHHHHHHcC-C-CCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CHHHHH
Q 036287 125 ---AC----------SQLGALELGRWIHSYMGKHR-I-DLNHIVGGALINMYSRCGDIDKALQVFEEMKE--R-DVTTYN 186 (488)
Q Consensus 125 ---~~----------~~~~~~~~a~~~~~~~~~~g-~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~ 186 (488)
++ ...+.+++|.+.++.+++.+ . +.....++.+...|...|++++|...|++..+ | +..+|.
T Consensus 290 ~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~ 369 (615)
T TIGR00990 290 TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYI 369 (615)
T ss_pred cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Confidence 00 11246778888888888765 2 33456778888889999999999999998765 3 356788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCccc-ChhhHHHHHHHHHh
Q 036287 187 SLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEP-QIEHYGCIVDLLSR 265 (488)
Q Consensus 187 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 265 (488)
.+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...|+...+ +.| +...+..+..++.+
T Consensus 370 ~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~---l~P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID---LDPDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCccCHHHHHHHHHHHHH
Confidence 88888999999999999999988752 33467777888889999999999999999874 344 46777788889999
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHH-------HHHHHhcCCChH
Q 036287 266 VGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVL-------LSNAYASSGKWK 336 (488)
Q Consensus 266 ~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-------l~~~~~~~g~~~ 336 (488)
.|++++|+..+++. ...| +...|+.+...+...|++++|...+++++++.|.+...+.. ....|...|+++
T Consensus 446 ~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~ 525 (615)
T TIGR00990 446 EGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFI 525 (615)
T ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHH
Confidence 99999999999887 4445 47788888999999999999999999999988765333221 122344468999
Q ss_pred HHHHHHHHHHhC
Q 036287 337 EAVQIRAKMKEA 348 (488)
Q Consensus 337 ~a~~~~~~m~~~ 348 (488)
+|.+++++..+.
T Consensus 526 eA~~~~~kAl~l 537 (615)
T TIGR00990 526 EAENLCEKALII 537 (615)
T ss_pred HHHHHHHHHHhc
Confidence 999999887664
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-14 Score=152.14 Aligned_cols=329 Identities=11% Similarity=0.048 Sum_probs=253.3
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhhCCC-CC-ceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHH
Q 036287 17 NRSTRLKLVELYGKCGEFKDAMQLFDEMPE-CN-DVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGL 91 (488)
Q Consensus 17 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~ 91 (488)
+.....-.+......|+.++|++++..... .+ +...+..+...+...|++++|.++|++.. +.+...+..++..+
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l 93 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTL 93 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 444455567778889999999999999775 22 34459999999999999999999999953 44677888999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 036287 92 VRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKAL 171 (488)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 171 (488)
...|++++|+..+++..+.. +.+.. +..+..++...|+.++|...++.+.+.. +.+..++..+..++...|..+.|.
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHH
Confidence 99999999999999998863 44555 8888889999999999999999999876 445666667777777777777666
Q ss_pred HHHHhccc---------------------------------------------------CCHH-HH----HHHHHHHHhc
Q 036287 172 QVFEEMKE---------------------------------------------------RDVT-TY----NSLIAGLAMH 195 (488)
Q Consensus 172 ~~~~~~~~---------------------------------------------------~~~~-~~----~~li~~~~~~ 195 (488)
+.++.... |+.. .+ ...+.++...
T Consensus 171 ~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 171 GAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 55553221 1100 00 1112345677
Q ss_pred CChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCccc--ChhhHHHHHHHHHhcCChHHH
Q 036287 196 GRSIEAVEMFREMINQGIR-PTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEP--QIEHYGCIVDLLSRVGRPEEA 272 (488)
Q Consensus 196 g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A 272 (488)
|++++|+..|+++.+.+.+ |+.. ...+..+|...|++++|...|+.+.+.....+ .......|..++...|++++|
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA 329 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGA 329 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHH
Confidence 8999999999999987532 4332 22256789999999999999999875311111 134566677788999999999
Q ss_pred HHHHHhC-CCCC-------------C---HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCCh
Q 036287 273 YDFITNM-KIAP-------------D---HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKW 335 (488)
Q Consensus 273 ~~~~~~m-~~~p-------------~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 335 (488)
.++++.+ ...| + ...+..+...+...|+.++|+..++++.+..|.++..+..++.++...|++
T Consensus 330 ~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~ 409 (765)
T PRK10049 330 LTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWP 409 (765)
T ss_pred HHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 9999988 3223 2 234556777888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCC
Q 036287 336 KEAVQIRAKMKEAG 349 (488)
Q Consensus 336 ~~a~~~~~~m~~~g 349 (488)
++|++.+++..+..
T Consensus 410 ~~A~~~l~~al~l~ 423 (765)
T PRK10049 410 RAAENELKKAEVLE 423 (765)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999887743
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.4e-13 Score=141.31 Aligned_cols=165 Identities=10% Similarity=0.086 Sum_probs=97.8
Q ss_pred hHHHHHHHHhCCCCch--hhHHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHH--HHHHHHcCCHHHHHHHHhhcCC
Q 036287 3 REIHGQVLKLGLRSNR--STRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVM--INCYVEHGLVENAFEVFSRVKV 78 (488)
Q Consensus 3 ~~i~~~~~~~g~~~~~--~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~l--i~~~~~~g~~~~A~~~f~~~~~ 78 (488)
.+.+.++++.. |+. .++ .++..+...|+.++|+..+++...+.+...+..+ ...|...|++++|+++|+++..
T Consensus 54 l~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~ 130 (822)
T PRK14574 54 LDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLK 130 (822)
T ss_pred HHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445554433 332 233 6777777777777777777777755434444444 4466677777777777777652
Q ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHH
Q 036287 79 ---KDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGG 155 (488)
Q Consensus 79 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 155 (488)
.|...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|.+.++.+.+.. +.+...+.
T Consensus 131 ~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~ 207 (822)
T PRK14574 131 KDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLK 207 (822)
T ss_pred hCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 24556666677777777777777777777664 3554555333333333455545777777777664 33454555
Q ss_pred HHHHHHHhcCCHHHHHHH
Q 036287 156 ALINMYSRCGDIDKALQV 173 (488)
Q Consensus 156 ~li~~y~~~g~~~~A~~~ 173 (488)
.++....+.|-...|.++
T Consensus 208 ~~~~~l~~~~~~~~a~~l 225 (822)
T PRK14574 208 NHLEILQRNRIVEPALRL 225 (822)
T ss_pred HHHHHHHHcCCcHHHHHH
Confidence 555555555544444433
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-13 Score=143.50 Aligned_cols=324 Identities=12% Similarity=0.080 Sum_probs=237.0
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhhCCC-CC----ceeeHHHHHHHHHHcCC---HHHHHHH----------------
Q 036287 17 NRSTRLKLVELYGKCGEFKDAMQLFDEMPE-CN----DVVASTVMINCYVEHGL---VENAFEV---------------- 72 (488)
Q Consensus 17 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~----~~~~~~~li~~~~~~g~---~~~A~~~---------------- 72 (488)
+....-.+.-...+.|+.++|.++|..... +. +...-+-++..|.+.+. ..+|..+
T Consensus 375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 454 (987)
T PRK09782 375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQL 454 (987)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhh
Confidence 444455555566778889999999888766 22 12234466777766655 3333222
Q ss_pred ---------HhhcC---CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHH
Q 036287 73 ---------FSRVK---VK--DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWI 138 (488)
Q Consensus 73 ---------f~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 138 (488)
+.... ++ +...|..+..++.. +++++|+..|.+.... .|+......+..++...|++++|...
T Consensus 455 ~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~ 531 (987)
T PRK09782 455 PGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAA 531 (987)
T ss_pred hhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 11111 22 56678888877776 7888899988877764 36665544555556788999999999
Q ss_pred HHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHH---HHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 036287 139 HSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNS---LIAGLAMHGRSIEAVEMFREMINQGIRP 215 (488)
Q Consensus 139 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~p 215 (488)
++.+... +|+...+..+...+.+.|+.++|...|++..+.+...++. +.......|++++|+..|++..+ ..|
T Consensus 532 ~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P 607 (987)
T PRK09782 532 WQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAP 607 (987)
T ss_pred HHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCC
Confidence 9887654 3444455667778888999999999998877643332332 23334455999999999999887 456
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 036287 216 TKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLL 292 (488)
Q Consensus 216 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 292 (488)
+...+..+..++.+.|+.++|...++...+ ..|+ ...++.+...+...|++++|++.+++. ...| +...+..+.
T Consensus 608 ~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA 684 (987)
T PRK09782 608 SANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLA 684 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 777888888889999999999999998884 3454 667778888899999999999998887 5555 477888888
Q ss_pred HHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 036287 293 SACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 293 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 350 (488)
.++...|++++|+..++++++..|.+..+.........+..+++.+.+-++.-...++
T Consensus 685 ~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 685 YVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 9999999999999999999999998888888888888888888888887776655444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.6e-13 Score=140.84 Aligned_cols=227 Identities=8% Similarity=0.023 Sum_probs=182.3
Q ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCHHHHHHHHHHH
Q 036287 115 NEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE--RDVTTYNSLIAGL 192 (488)
Q Consensus 115 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~ 192 (488)
+...+..+..++.. ++.++|...+....... |+......+...+...|++++|...|+++.. ++...+..+...+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~al 552 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTA 552 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 45555656555555 67778888777766553 4444444455556789999999999998764 4455677778888
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHH
Q 036287 193 AMHGRSIEAVEMFREMINQGIRPTK-VTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEE 271 (488)
Q Consensus 193 ~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 271 (488)
.+.|+.++|...|++..+.. |+. ..+..+.......|++++|...++... .+.|+...|..+..++.+.|++++
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999998853 433 333344445556799999999999998 446788899999999999999999
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 272 AYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 272 A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
|+..+++. ...|+ ...+..+..++...|+.++|+..++++++..|.++..+..+..+|...|++++|+..+++..+..
T Consensus 628 A~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 628 AVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999988 66665 67788888899999999999999999999999999999999999999999999999999987643
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.4e-12 Score=134.01 Aligned_cols=323 Identities=12% Similarity=0.095 Sum_probs=246.9
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCC--ceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCH-HHHHHH--HHHHHHcCCH
Q 036287 23 KLVELYGKCGEFKDAMQLFDEMPECN--DVVASTVMINCYVEHGLVENAFEVFSRVKVKDT-VCWTAM--IDGLVRNGEM 97 (488)
Q Consensus 23 ~li~~y~~~g~~~~A~~~~~~m~~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~-~~~~~l--i~~~~~~g~~ 97 (488)
.-+-...+.|+++.|...|++..+.+ +......++..+...|+.++|+..+++...|+. ..+..+ ...|...|++
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 33445568999999999999988754 211234888999999999999999999886643 333334 5688889999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036287 98 ARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEM 177 (488)
Q Consensus 98 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 177 (488)
++|+++|+++.+.. +-+...+..++..+...++.++|.+.+..+.+.. |+...+..++..+...++..+|++.++++
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 99999999999874 4456777788888999999999999999998764 44555555666665567776699888887
Q ss_pred cc--C------------------------------CH-----------------H----------------------HHH
Q 036287 178 KE--R------------------------------DV-----------------T----------------------TYN 186 (488)
Q Consensus 178 ~~--~------------------------------~~-----------------~----------------------~~~ 186 (488)
.+ | +. + -+.
T Consensus 196 l~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 196 VRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 53 1 00 0 000
Q ss_pred H---------------------HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhccc
Q 036287 187 S---------------------LIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTR 245 (488)
Q Consensus 187 ~---------------------li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 245 (488)
. .+-++...|+..++++.|+.|...|.+-...+-..+.++|...+++++|..++..+..
T Consensus 276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 1 1334566778888999999998887654455777899999999999999999999865
Q ss_pred ccC----cccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCC-------------CC---HHHHHHHHHHHHHhCChhHH
Q 036287 246 DYG----IEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIA-------------PD---HIMLGSLLSACKIHGKLQLG 304 (488)
Q Consensus 246 ~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-------------p~---~~~~~~ll~~~~~~g~~~~a 304 (488)
..+ ..++......|.-+|...+++++|..+++++ ... || ......++..+...|++.+|
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 422 2334555678899999999999999999988 111 22 22334456677889999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 305 EQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 305 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
++.++++....|.|......+.+++...|.+.+|++.++.....
T Consensus 436 e~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 436 QKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999766543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.64 E-value=8e-13 Score=131.39 Aligned_cols=322 Identities=13% Similarity=0.147 Sum_probs=255.0
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCC--ceeeHHHHHHHHHHcCCHHHHHHHHhh---cCCCCHHHHHHHHHHHHHcCCH
Q 036287 23 KLVELYGKCGEFKDAMQLFDEMPECN--DVVASTVMINCYVEHGLVENAFEVFSR---VKVKDTVCWTAMIDGLVRNGEM 97 (488)
Q Consensus 23 ~li~~y~~~g~~~~A~~~~~~m~~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~ 97 (488)
...+.....|++++|.+++.++...+ ....|.+|...|-+.|+.+++...+-. +.+.|..-|-.+.....+.|++
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccH
Confidence 33344444599999999999986633 588999999999999999999987654 3466889999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHH----HHHHHHhcCCHHHHHHH
Q 036287 98 ARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGA----LINMYSRCGDIDKALQV 173 (488)
Q Consensus 98 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----li~~y~~~g~~~~A~~~ 173 (488)
++|.-.|.+.++.. +++...+---...|-+.|+...|..-+.++.+...+.|..-... .+..|...++-+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999975 56767777778889999999999999999988764444333333 35567777888999998
Q ss_pred HHhccc--C---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH----------------------H----HH
Q 036287 174 FEEMKE--R---DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVT----------------------F----VG 222 (488)
Q Consensus 174 ~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t----------------------~----~~ 222 (488)
++.... . +...++.++..|.+..+++.|......+......+|..- | ..
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 887664 2 345688999999999999999999888876222222211 1 12
Q ss_pred HHHHHhccCCHHHHHHHHHhcccccC--cccChhhHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHH
Q 036287 223 VLNACSHGGLVDLGFEIFQSMTRDYG--IEPQIEHYGCIVDLLSRVGRPEEAYDFITNM---KIAPDHIMLGSLLSACKI 297 (488)
Q Consensus 223 ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~ 297 (488)
+.-++.+....+....+.....+. . ..-++..|.-+.++|...|++.+|+.+|..+ +...+..+|-.+...|..
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 333444555555555555555542 4 3345788999999999999999999999998 222357899999999999
Q ss_pred hCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHH
Q 036287 298 HGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMK 346 (488)
Q Consensus 298 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 346 (488)
.|..++|...+++++...|.+..+-..|...|...|+.++|.+++..+.
T Consensus 462 l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999876
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.5e-16 Score=143.17 Aligned_cols=256 Identities=16% Similarity=0.174 Sum_probs=110.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc
Q 036287 86 AMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV-CVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRC 164 (488)
Q Consensus 86 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 164 (488)
.+...+.+.|++++|++++++......+|+...|- .+...+...++.+.|.+.++.+.+.+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44667788888899988886654443234444443 4445566788888899888888877633 56667777777 688
Q ss_pred CCHHHHHHHHHhccc--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 036287 165 GDIDKALQVFEEMKE--RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQG-IRPTKVTFVGVLNACSHGGLVDLGFEIFQ 241 (488)
Q Consensus 165 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 241 (488)
+++++|.+++.+.-+ ++...+..++..+.+.++++++.++++++.... .+++...|..+...+.+.|+.++|...++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 899999888876643 566678888888999999999999999977543 34566677777888889999999999999
Q ss_pred hcccccCcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC
Q 036287 242 SMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM--KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD 318 (488)
Q Consensus 242 ~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 318 (488)
...+ ..|+ ......++..+...|+.+++.++++.. ..+.|+..|..+..++...|+.++|...+++..+..|.|
T Consensus 171 ~al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 171 KALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 9884 3564 777888999999999999988887776 223456788899999999999999999999999999999
Q ss_pred chhHHHHHHHHhcCCChHHHHHHHHHHH
Q 036287 319 SGTYVLLSNAYASSGKWKEAVQIRAKMK 346 (488)
Q Consensus 319 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 346 (488)
+.+...++.++...|+.++|.+++++..
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999988764
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.9e-12 Score=123.45 Aligned_cols=276 Identities=14% Similarity=0.073 Sum_probs=206.9
Q ss_pred HcCCHHHHHHHHhhcCCC--C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCchHHHH
Q 036287 62 EHGLVENAFEVFSRVKVK--D-TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV--CVLSACSQLGALELGR 136 (488)
Q Consensus 62 ~~g~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~ 136 (488)
..|+++.|++.+...+.. + ...|........+.|+++.|...|.++.+. .|+..... .....+...|+++.|.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 359999999988876643 2 333433344558899999999999999874 46654333 3356778899999999
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCC---H--------HHHHHHHHHHHhcCChhHHHHHH
Q 036287 137 WIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD---V--------TTYNSLIAGLAMHGRSIEAVEMF 205 (488)
Q Consensus 137 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~--------~~~~~li~~~~~~g~~~~A~~l~ 205 (488)
+.++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+.. . .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999998887 5577888899999999999999999998887532 1 13333444444445556666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 036287 206 REMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD 284 (488)
Q Consensus 206 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 284 (488)
+.+-+. .+.+......+..++...|+.++|.+++....+. .|+.... ++......++.+++.+.+++. +..|+
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 665432 3456777788889999999999999999888742 4554221 233333558999999998887 44554
Q ss_pred -HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 285 -HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 285 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
+.....+...|...+++++|...|+.+.+..|++ ..+..|..++.+.|+.++|.+++++-..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6678888999999999999999999999998876 6788999999999999999999987643
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-11 Score=119.74 Aligned_cols=78 Identities=17% Similarity=0.157 Sum_probs=40.1
Q ss_pred CChHHHHHHHHhC-CCCCC-H--HHHHHHHHHHHHhCChhHHHHHHHH--HHhcCCCCchhHHHHHHHHhcCCChHHHHH
Q 036287 267 GRPEEAYDFITNM-KIAPD-H--IMLGSLLSACKIHGKLQLGEQIAKR--LLDCRSADSGTYVLLSNAYASSGKWKEAVQ 340 (488)
Q Consensus 267 g~~~~A~~~~~~m-~~~p~-~--~~~~~ll~~~~~~g~~~~a~~~~~~--~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 340 (488)
++.+.+.+.+++. ...|+ + ....++...+.+.|++++|.+.|+. ..+..|++ ..+..++..+.+.|+.++|.+
T Consensus 313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~ 391 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAA 391 (409)
T ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHH
Confidence 4444455544443 22232 2 3444555556666666666666663 33344433 345566666666666666666
Q ss_pred HHHHH
Q 036287 341 IRAKM 345 (488)
Q Consensus 341 ~~~~m 345 (488)
++++-
T Consensus 392 ~~~~~ 396 (409)
T TIGR00540 392 MRQDS 396 (409)
T ss_pred HHHHH
Confidence 66553
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-11 Score=111.53 Aligned_cols=233 Identities=18% Similarity=0.293 Sum_probs=172.6
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcH
Q 036287 72 VFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNH 151 (488)
Q Consensus 72 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 151 (488)
++-+..++...++.+||.+.++--..+.|.++|++-.....+.+..+|+.+|.+-+ +..++++..+|+...+.||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCch
Confidence 44444455678899999999999999999999999988778899999999987754 33448889999999999999
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHH----Hhcc----cCCHHHHHHHHHHHHhcCChhH-HHHHHHHHHHc----CCCC---
Q 036287 152 IVGGALINMYSRCGDIDKALQVF----EEMK----ERDVTTYNSLIAGLAMHGRSIE-AVEMFREMINQ----GIRP--- 215 (488)
Q Consensus 152 ~~~~~li~~y~~~g~~~~A~~~~----~~~~----~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~----g~~p--- 215 (488)
.++|+++.+.++.|+++.|++.+ .+|+ +|...+|..+|..+.+.++..+ |..++.+.+.. .++|
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 99999999999999988876554 4454 3788899999999998888755 44455555432 2222
Q ss_pred -CHHHHHHHHHHHhccCCHHHHHHHHHhcccc--cC-cccC---hhhHHHHHHHHHhcCChHHHHHHHHhC---CCCCCH
Q 036287 216 -TKVTFVGVLNACSHGGLVDLGFEIFQSMTRD--YG-IEPQ---IEHYGCIVDLLSRVGRPEEAYDFITNM---KIAPDH 285 (488)
Q Consensus 216 -~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~--~~-~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~ 285 (488)
|...|...+..|.+..+.+.|.++..-.... +. +.|+ ..-|..+.++.++...++.-...++.| -.-|+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 4556778889999999999998887666531 11 2333 234667778888888888888888888 244677
Q ss_pred HHHHHHHHHHHHhCChhHHHHHH
Q 036287 286 IMLGSLLSACKIHGKLQLGEQIA 308 (488)
Q Consensus 286 ~~~~~ll~~~~~~g~~~~a~~~~ 308 (488)
.+...++++....+.++..-+++
T Consensus 434 ~~m~~~lrA~~v~~~~e~ipRiw 456 (625)
T KOG4422|consen 434 QTMIHLLRALDVANRLEVIPRIW 456 (625)
T ss_pred hhHHHHHHHHhhcCcchhHHHHH
Confidence 77777777776666655444443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-11 Score=119.08 Aligned_cols=278 Identities=11% Similarity=0.013 Sum_probs=218.0
Q ss_pred cCChHHHHHHHhhCCCCC-ceeeHHHH-HHHHHHcCCHHHHHHHHhhcCC--CCHHHHH--HHHHHHHHcCCHHHHHHHH
Q 036287 31 CGEFKDAMQLFDEMPECN-DVVASTVM-INCYVEHGLVENAFEVFSRVKV--KDTVCWT--AMIDGLVRNGEMARALDLF 104 (488)
Q Consensus 31 ~g~~~~A~~~~~~m~~~~-~~~~~~~l-i~~~~~~g~~~~A~~~f~~~~~--~~~~~~~--~li~~~~~~g~~~~A~~~~ 104 (488)
.|+++.|++.+...++.. ++..+..+ .....+.|+++.|...|.++.+ |+..... .....+...|++++|+..+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 699999999998876642 22333333 3444899999999999999863 3332222 3367889999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHh-------HHHHHHHHHHhcCCHHHHHHHHHhc
Q 036287 105 REMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHI-------VGGALINMYSRCGDIDKALQVFEEM 177 (488)
Q Consensus 105 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-------~~~~li~~y~~~g~~~~A~~~~~~~ 177 (488)
+++.+.. +-+......+...+.+.|+++.+..++..+.+.+..++.. ++..++.......+.+...++++.+
T Consensus 177 ~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 177 DKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 9998875 4467788888999999999999999999999987543332 3334444445556677777888877
Q ss_pred cc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChh
Q 036287 178 KE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIE 254 (488)
Q Consensus 178 ~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 254 (488)
++ .++.....+...+...|+.++|.+++++..+. +||.... ++.+....++.+++.+..+...+. -+-|+.
T Consensus 256 p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~ 329 (398)
T PRK10747 256 SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPL 329 (398)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHH
Confidence 64 47788999999999999999999999999883 5555322 334444569999999999998864 234466
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC
Q 036287 255 HYGCIVDLLSRVGRPEEAYDFITNM-KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCR 315 (488)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 315 (488)
.+.++...+.+.+++++|.+.|+.. ...|+...+..+...+...|+.++|..++++.+.+-
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 7889999999999999999999998 788999999999999999999999999999987743
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.4e-11 Score=112.00 Aligned_cols=203 Identities=13% Similarity=0.130 Sum_probs=163.6
Q ss_pred hcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc---cCCHHHHHHHHHHHHhcCChhHHHHH
Q 036287 128 QLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMK---ERDVTTYNSLIAGLAMHGRSIEAVEM 204 (488)
Q Consensus 128 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l 204 (488)
..|++++|.+.+++.+...-.-....|| +.-.|-+.|++++|+..|-++. ..++...-.+.+.|-...+..+|+++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 3467888888888887665333333333 3334677899999999887765 36777777888888888999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 036287 205 FREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP 283 (488)
Q Consensus 205 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 283 (488)
+.+.... ++.|......|...|-+.|+-.+|.+.+-.-.+ -++.+..+...|...|....-+++|+..|++. -++|
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 8877654 566777788888999999999999888766543 45667888888999999999999999999998 6789
Q ss_pred CHHHHHHHHHHH-HHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCC
Q 036287 284 DHIMLGSLLSAC-KIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGK 334 (488)
Q Consensus 284 ~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 334 (488)
+..-|..++..| ++.|++++|..+++.+....|.+......|+..+...|.
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999998877 567999999999999999999999999999999988886
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.1e-11 Score=111.13 Aligned_cols=351 Identities=14% Similarity=0.109 Sum_probs=264.7
Q ss_pred HhHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCC-C-ceeeHHHHHHHHHHcCCHHHHHHHHhhcC--
Q 036287 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPEC-N-DVVASTVMINCYVEHGLVENAFEVFSRVK-- 77 (488)
Q Consensus 2 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~-- 77 (488)
|+.||+..+... ..+..+|-..+.+=.++..+..|+.++++.... + --..|--.+..=-..|++..|.++|++-.
T Consensus 92 ARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w 170 (677)
T KOG1915|consen 92 ARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW 170 (677)
T ss_pred HHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC
Confidence 677888887766 566777888888888899999999998876441 1 12356666666677889999999998743
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHc-CC-CCcHhHHH
Q 036287 78 VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKH-RI-DLNHIVGG 155 (488)
Q Consensus 78 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~-~~~~~~~~ 155 (488)
+|+..+|++.|..-.+-.+.+.|..+|++..- +.|+..+|.-...-=.+.|+...+.+++..+++. |- ..+..++.
T Consensus 171 ~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfv 248 (677)
T KOG1915|consen 171 EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFV 248 (677)
T ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 78899999999988888899999999998876 4588888887777777888888888888877653 21 11233444
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccc-----------------------------------------------CCHHHHHHH
Q 036287 156 ALINMYSRCGDIDKALQVFEEMKE-----------------------------------------------RDVTTYNSL 188 (488)
Q Consensus 156 ~li~~y~~~g~~~~A~~~~~~~~~-----------------------------------------------~~~~~~~~l 188 (488)
+....=.++..++.|.-+|+-..+ -|-.+|--.
T Consensus 249 aFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdy 328 (677)
T KOG1915|consen 249 AFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDY 328 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHH
Confidence 444444556666666655543221 034567667
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHH-------HHHHHHHHH---hccCCHHHHHHHHHhcccccCcccChhhHHH
Q 036287 189 IAGLAMHGRSIEAVEMFREMINQGIRPTKV-------TFVGVLNAC---SHGGLVDLGFEIFQSMTRDYGIEPQIEHYGC 258 (488)
Q Consensus 189 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------t~~~ll~a~---~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 258 (488)
+..-...|+.+...++|++.... ++|-.. .|.-+--+| ....+++.+.++++...+ -++....|+.-
T Consensus 329 lrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkkFtFaK 405 (677)
T KOG1915|consen 329 LRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKKFTFAK 405 (677)
T ss_pred HHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCcccchHHH
Confidence 77777789999999999999875 666321 222222222 246889999999999884 44555677776
Q ss_pred HHHHHH----hcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCC
Q 036287 259 IVDLLS----RVGRPEEAYDFITNM-KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSG 333 (488)
Q Consensus 259 li~~~~----~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 333 (488)
+--+|+ ++.++..|.+++... |.-|...++...|..-.+.++++...+++++.++.+|.+..+|.-.+..-...|
T Consensus 406 iWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lg 485 (677)
T KOG1915|consen 406 IWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLG 485 (677)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhh
Confidence 666665 688999999999887 889999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCCCccCCceeE
Q 036287 334 KWKEAVQIRAKMKEAGVQKEPGCSS 358 (488)
Q Consensus 334 ~~~~a~~~~~~m~~~g~~~~~~~s~ 358 (488)
+++.|..+|+..........|..-|
T Consensus 486 dtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 486 DTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred hHHHHHHHHHHHhcCcccccHHHHH
Confidence 9999999999998776544444433
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.8e-11 Score=110.50 Aligned_cols=327 Identities=10% Similarity=0.006 Sum_probs=248.3
Q ss_pred CCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHH-HHHHHHH
Q 036287 13 GLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCW-TAMIDGL 91 (488)
Q Consensus 13 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~-~~li~~~ 91 (488)
|-.-|.+.+-...-.+-+.|..+.|...|.....+- +..|.+-+....-.-+.+.+..+....+..+...- --+..+|
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 446666666666667778888889999888877766 77888877777777777777766655554332211 1244566
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCC--CCcHhHHHHHHHHHHhcCCHHH
Q 036287 92 VRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRI--DLNHIVGGALINMYSRCGDIDK 169 (488)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~ 169 (488)
....+.++++.-.+.....|++-+...-+....+.-...++++|+.+|+.+.+... -.|..+|+.++ |.+..+-.-
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~skL 315 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHHH
Confidence 66678888888888888888765555555555556678899999999999998741 12556666655 343332221
Q ss_pred ---HHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHhccc
Q 036287 170 ---ALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPT-KVTFVGVLNACSHGGLVDLGFEIFQSMTR 245 (488)
Q Consensus 170 ---A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 245 (488)
|..++ .+.+=-+.|.-.+.+-|.-.++.++|...|++..+. .|. ...++.+..-|....+...|.+-++.+.+
T Consensus 316 s~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 316 SYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 22222 222223456666778888899999999999999985 454 44566667789999999999999999984
Q ss_pred ccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHH
Q 036287 246 DYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYV 323 (488)
Q Consensus 246 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 323 (488)
-.+.|-..|-.|.++|.-.+...-|+-.|++. ..+| |...|.+|...|.+.++.++|++.|+++...+..+...|.
T Consensus 393 --i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~ 470 (559)
T KOG1155|consen 393 --INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALV 470 (559)
T ss_pred --cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHH
Confidence 23446789999999999999999999999998 6777 5899999999999999999999999999999877888999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHh
Q 036287 324 LLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 324 ~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
.|++.|-+.++.++|...+++-.+
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999987765
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.1e-12 Score=122.09 Aligned_cols=274 Identities=15% Similarity=0.086 Sum_probs=211.3
Q ss_pred CHHHHHHHHhhcC--CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCchHHHHHHH
Q 036287 65 LVENAFEVFSRVK--VKDT-VCWTAMIDGLVRNGEMARALDLFREMQRDNV--RPNEVTIVCVLSACSQLGALELGRWIH 139 (488)
Q Consensus 65 ~~~~A~~~f~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~ 139 (488)
+.++|...|..++ .+|+ .....+..+|...+++++|.++|+.+.+... .-+..+|++.+--.-+.- +...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHHHH
Confidence 5678888888866 2343 3445677899999999999999999887421 125677887776543211 12222
Q ss_pred -HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 036287 140 -SYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER---DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRP 215 (488)
Q Consensus 140 -~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 215 (488)
+.+++.. +..+.+|.++.++|+-.++.+.|++.|++..+- ...+|+.+..-+.....++.|...|+..+. +.|
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 2223322 556789999999999999999999999998864 457788888888888999999999998865 333
Q ss_pred CH-HHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 036287 216 TK-VTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSL 291 (488)
Q Consensus 216 ~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 291 (488)
.. ..|..+...|.+.++++.|+-.|+.+. .+.|. .....++...+-+.|+.++|++++++. ...| |+..--.-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 32 345567788999999999999999988 56665 555667788899999999999999998 4444 44444455
Q ss_pred HHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 292 LSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 292 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
...+...++.++|...++++.++-|++..+|..++..|-+.|+.+.|+.-|.-+.+.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 666778899999999999999999999999999999999999999999988877654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.7e-12 Score=123.90 Aligned_cols=244 Identities=13% Similarity=0.102 Sum_probs=196.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcC--CCCcHhHHHHHHHHHHhcCCHHH-HH
Q 036287 95 GEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHR--IDLNHIVGGALINMYSRCGDIDK-AL 171 (488)
Q Consensus 95 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~-A~ 171 (488)
-+..+|+.+|...... +.-+......+..+|..++++++++++|+.+.+.. ...+..+|++.+--.-+.=.+.. |.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3578999999995554 44455777788999999999999999999998764 22356777776643222111111 11
Q ss_pred HHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcc
Q 036287 172 QVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRP-TKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIE 250 (488)
Q Consensus 172 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 250 (488)
.+. .+....+.+|-++.+.|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+... .
T Consensus 412 ~Li-~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~ 483 (638)
T KOG1126|consen 412 DLI-DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----G 483 (638)
T ss_pred HHH-hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----c
Confidence 121 22234678999999999999999999999999988 566 67788888788888899999999999877 3
Q ss_pred cChhhHH---HHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHH
Q 036287 251 PQIEHYG---CIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLL 325 (488)
Q Consensus 251 p~~~~~~---~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 325 (488)
.|+.+|+ .|...|.+.++++.|+-.|++. .+.|. .+....+...+.+.|+.|+|+.+++++..++|.|+-.-...
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 4555665 5667899999999999999998 78884 67777788889999999999999999999999999999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHh
Q 036287 326 SNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 326 ~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
+..+...+++++|++.++++++
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHH
Confidence 9999999999999999999987
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.7e-11 Score=115.66 Aligned_cols=281 Identities=13% Similarity=0.032 Sum_probs=197.0
Q ss_pred hcCChHHHHHHHhhCCCCCc--eeeHHHHHHHHHHcCCHHHHHHHHhhcC--CCC--HHHHHHHHHHHHHcCCHHHHHHH
Q 036287 30 KCGEFKDAMQLFDEMPECND--VVASTVMINCYVEHGLVENAFEVFSRVK--VKD--TVCWTAMIDGLVRNGEMARALDL 103 (488)
Q Consensus 30 ~~g~~~~A~~~~~~m~~~~~--~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~--~~~~~~li~~~~~~g~~~~A~~~ 103 (488)
..|+++.|++.+....+..+ ...+-....++.+.|+.+.|.+.|.+.. .|+ ....-.....+.+.|++++|+..
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 57899999999887766331 2233344566777899999999998853 233 23444457788889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHH-------HhcCCHHHHHHHHHh
Q 036287 104 FREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMY-------SRCGDIDKALQVFEE 176 (488)
Q Consensus 104 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y-------~~~g~~~~A~~~~~~ 176 (488)
++++.+.. |-+...+..+...+...|+++.+.+.+..+.+.+..+.......-...+ ......+...+..+.
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99998875 3466678888888999999999999999999887543332211111111 222233444555555
Q ss_pred ccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH---HHHHHHHhccCCHHHHHHHHHhcccccCcc
Q 036287 177 MKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTF---VGVLNACSHGGLVDLGFEIFQSMTRDYGIE 250 (488)
Q Consensus 177 ~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 250 (488)
.++ .+...+..+...+...|+.++|.+++++..+. .||.... ..........++.+.+.+.++...+...-.
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~ 332 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK 332 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC
Confidence 554 37788888889999999999999999998885 3444321 112222334577888888888877542222
Q ss_pred cChhhHHHHHHHHHhcCChHHHHHHHHh--C-CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHh
Q 036287 251 PQIEHYGCIVDLLSRVGRPEEAYDFITN--M-KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLD 313 (488)
Q Consensus 251 p~~~~~~~li~~~~~~g~~~~A~~~~~~--m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 313 (488)
|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3225566888888999999999999993 3 6678888888889999999999999999998765
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-13 Score=127.67 Aligned_cols=249 Identities=17% Similarity=0.197 Sum_probs=61.1
Q ss_pred HHHHHHHhcCChHHHHHHHhh-CCC---CCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcC
Q 036287 23 KLVELYGKCGEFKDAMQLFDE-MPE---CNDVVASTVMINCYVEHGLVENAFEVFSRVKVK---DTVCWTAMIDGLVRNG 95 (488)
Q Consensus 23 ~li~~y~~~g~~~~A~~~~~~-m~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g 95 (488)
.+..++.+.|++++|.++++. +.. ++++..|..+.......++.+.|.+.++++... +...+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 456667777777777777743 222 224555555555666666666666666666532 23344455554 4666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcC-CCCcHhHHHHHHHHHHhcCCHHHHHHHH
Q 036287 96 EMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHR-IDLNHIVGGALINMYSRCGDIDKALQVF 174 (488)
Q Consensus 96 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~~ 174 (488)
++++|.+++.+..+. .+++..+..++..+...++++.+..++..+.... .+.+...+..+...|.+.|+.++|.+.|
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666555443 2344445555555555666666666555554322 2334444555555555555555555555
Q ss_pred Hhccc--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCccc
Q 036287 175 EEMKE--R-DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEP 251 (488)
Q Consensus 175 ~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 251 (488)
++..+ | |....+.++..+...|+.+++.++++...+.. +.|...+..+..++...|+.++|..+|+...+. -+.
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~ 246 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPD 246 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc--ccc
Confidence 54442 2 23444445555555555555444444444431 223333344444444555555555555544421 122
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHH
Q 036287 252 QIEHYGCIVDLLSRVGRPEEAYDFIT 277 (488)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~ 277 (488)
|+.....+.+++...|+.++|.++.+
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp -HHHHHHHHHHHT-------------
T ss_pred cccccccccccccccccccccccccc
Confidence 34444444444444444444444443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.4e-11 Score=111.93 Aligned_cols=254 Identities=12% Similarity=0.119 Sum_probs=175.3
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHH
Q 036287 91 LVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACS--QLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDID 168 (488)
Q Consensus 91 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 168 (488)
|.++|+++.|+++++-+.+..-+.-...-+.+-..+. .-.++..|.++-+..+... .-+......-.+.-...|+++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHH
Confidence 4566666666666666554432222222222111111 1224555555555444332 112222222222334578999
Q ss_pred HHHHHHHhcccCCHHHHHHHHH---HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhccc
Q 036287 169 KALQVFEEMKERDVTTYNSLIA---GLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTR 245 (488)
Q Consensus 169 ~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 245 (488)
+|...+++....|...-.+|.+ .+-..|+.++|++.|-++..- +..+......+.+.|....+..+|.+++.+...
T Consensus 508 ka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s 586 (840)
T KOG2003|consen 508 KAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS 586 (840)
T ss_pred HHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc
Confidence 9999999998888765444433 467889999999999998764 455667777888999999999999999988873
Q ss_pred ccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHH
Q 036287 246 DYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KI-APDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYV 323 (488)
Q Consensus 246 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 323 (488)
-++.|+...+-|.+.|-+.|+-..|.+..-.- .. +-|..+..-|..-|....-.+.++..|+++.-..|.....-.
T Consensus 587 --lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwql 664 (840)
T KOG2003|consen 587 --LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQL 664 (840)
T ss_pred --cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 55667899999999999999999999876554 33 335666666777788888889999999999888887654444
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 324 LLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 324 ~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
.+..++.+.|++..|.++++....+
T Consensus 665 miasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 665 MIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHh
Confidence 5566778899999999999988654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.9e-10 Score=113.41 Aligned_cols=333 Identities=11% Similarity=0.065 Sum_probs=195.8
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCC-----ceeeHHHHHHHHHHcCCHHHHHHHHhhcCC--CC--HHHHH
Q 036287 15 RSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECN-----DVVASTVMINCYVEHGLVENAFEVFSRVKV--KD--TVCWT 85 (488)
Q Consensus 15 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-----~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~--~~~~~ 85 (488)
.-++.+.+.|.+.|.-.|+++.+..+...+.... -..+|--+..+|-..|++++|...|.+... +| +..+-
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 3456667778888888888888777766554421 233466677778888888888887766542 22 33455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----chHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 036287 86 AMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLG----ALELGRWIHSYMGKHRIDLNHIVGGALINMY 161 (488)
Q Consensus 86 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 161 (488)
-|.+.|.+.|+.+.|...|+...+.. +-+..|..++...|+..+ ..+.|..+.....+.- +.|...|-.+..+|
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLL 424 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHH
Confidence 67777888888888888888777752 445566666666666654 3445555554444433 33444555555444
Q ss_pred HhcCCHHHHHHHHHhcc--------cCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCCH-----HH-HHHHH
Q 036287 162 SRCGDIDKALQVFEEMK--------ERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQ---GIRPTK-----VT-FVGVL 224 (488)
Q Consensus 162 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~-----~t-~~~ll 224 (488)
-...- -.++.+|.... ...+...|.+...+...|++.+|...|.+.... ...+|. .| -..+.
T Consensus 425 e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 425 EQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 43222 11233332221 234455566666666666666666666655433 122222 11 11122
Q ss_pred HHHhccCCHHHHHHHHHhccccc--------------------------------CcccChhhHHHHHHHHHhcCChHHH
Q 036287 225 NACSHGGLVDLGFEIFQSMTRDY--------------------------------GIEPQIEHYGCIVDLLSRVGRPEEA 272 (488)
Q Consensus 225 ~a~~~~g~~~~a~~~~~~~~~~~--------------------------------~~~p~~~~~~~li~~~~~~g~~~~A 272 (488)
......++.+.|.+.|..+.+.+ ....++..++.+...+.+...+..|
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc
Confidence 22333444455555554444321 2223333344444444444444444
Q ss_pred HHHHH----hCCCCCCHHHHHHHHHHHHHh------------CChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChH
Q 036287 273 YDFIT----NMKIAPDHIMLGSLLSACKIH------------GKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWK 336 (488)
Q Consensus 273 ~~~~~----~m~~~p~~~~~~~ll~~~~~~------------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 336 (488)
.+-|. +....+|+.+.-+|.+.|... +..++|.++|.++++.+|.|..+-+.++-+++..|++.
T Consensus 584 ~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~ 663 (1018)
T KOG2002|consen 584 KKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFS 663 (1018)
T ss_pred ccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCch
Confidence 44222 222335666666666655322 34678999999999999999888889999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 036287 337 EAVQIRAKMKEAGV 350 (488)
Q Consensus 337 ~a~~~~~~m~~~g~ 350 (488)
+|..+|.+.++...
T Consensus 664 ~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 664 EARDIFSQVREATS 677 (1018)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998765
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.42 E-value=7e-11 Score=106.62 Aligned_cols=197 Identities=15% Similarity=0.110 Sum_probs=158.4
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036287 150 NHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNA 226 (488)
Q Consensus 150 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 226 (488)
....+..+...|...|++++|...|++..+ .+...+..+...|...|++++|.+.|++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 356677788888888999999888887654 345677888888888999999999999888753 3345566777788
Q ss_pred HhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHH
Q 036287 227 CSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLG 304 (488)
Q Consensus 227 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 304 (488)
+...|++++|.+.+...............+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 88899999999999988753222233556777888899999999999999887 4444 466788888899999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 305 EQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 305 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
...+++..+..|.++..+..++..+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999988888888888899999999999999998887754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-11 Score=122.86 Aligned_cols=266 Identities=15% Similarity=0.149 Sum_probs=194.6
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCC
Q 036287 102 DLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD 181 (488)
Q Consensus 102 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 181 (488)
.++-.+...|+.|+.+||.+++.-|+..|+.+.|- +|..|.-..++.+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667888999999999999999999999999999 9999998888899999999999999999888776 788
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHH
Q 036287 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVD 261 (488)
Q Consensus 182 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 261 (488)
..+|..+..+|.++|+..- ++..++ ....+...++..|.-..-..++..+.-..+.-||.. ..+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 8999999999999999765 333332 122344455556665555566655443334555543 3566
Q ss_pred HHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC-ChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHH
Q 036287 262 LLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHG-KLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQ 340 (488)
Q Consensus 262 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 340 (488)
...-.|.++.+.+++..+|...-.......++-+.... .+++-....+...+ .+++.+|..++..-..+|+.+.|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e--~~~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE--APTSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc--CCChHHHHHHHHHHHhcCchhhHHH
Confidence 67778889999999988854321112222344443332 33444444444443 4577899999999999999999999
Q ss_pred HHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCccCCCcccccc
Q 036287 341 IRAKMKEAGVQKEPGCSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPSTEVVLHD 407 (488)
Q Consensus 341 ~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~ 407 (488)
++.+|+++|++-.+.+.|.++-+ .. ...-++.+++-|.+.|+.||..|....
T Consensus 226 ll~emke~gfpir~HyFwpLl~g--------~~-------~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG--------IN-------AAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc--------Cc-------cchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 99999999999999999976543 11 123345578889999999999985433
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.5e-10 Score=105.89 Aligned_cols=232 Identities=11% Similarity=0.044 Sum_probs=112.2
Q ss_pred HHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCC-----ceeeHHHHHHHHHHcCCHH-HHHHHHhhcCCCCHH
Q 036287 9 VLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECN-----DVVASTVMINCYVEHGLVE-NAFEVFSRVKVKDTV 82 (488)
Q Consensus 9 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-----~~~~~~~li~~~~~~g~~~-~A~~~f~~~~~~~~~ 82 (488)
+...|++-+.+.-+....++-...|+++|+.+|+++...+ |..+|+.++-.--.+..+. -|..++. +..=-+.
T Consensus 253 l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~-idKyR~E 331 (559)
T KOG1155|consen 253 LSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSN-IDKYRPE 331 (559)
T ss_pred HHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHH-hccCCcc
Confidence 3344444444444444444444555555555555554422 3334443332222111111 1222221 1111123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYS 162 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 162 (488)
|...+.+-|+-.++.++|...|++.++.+ +-....|+.+..-|..+.+...|.+-+..+++.. +.|-..|-.|..+|.
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYE 409 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHH
Confidence 33344444555555555555555555543 2233445555555555555555555555555554 445555555555555
Q ss_pred hcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 036287 163 RCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEI 239 (488)
Q Consensus 163 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 239 (488)
-.+...-|+-.|++..+ .|...|.+|..+|.+.++.++|++.|......| ..+...+..|...+-+.++.++|.+.
T Consensus 410 im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHH
Confidence 55555555555555432 355555555555555555555555555555543 22444555555555555555555555
Q ss_pred HHhcc
Q 036287 240 FQSMT 244 (488)
Q Consensus 240 ~~~~~ 244 (488)
|..-.
T Consensus 489 yek~v 493 (559)
T KOG1155|consen 489 YEKYV 493 (559)
T ss_pred HHHHH
Confidence 55443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.3e-10 Score=100.51 Aligned_cols=288 Identities=14% Similarity=0.152 Sum_probs=133.6
Q ss_pred CCHHHHHHHHhhcCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCchHHHHH
Q 036287 64 GLVENAFEVFSRVKVKDTV---CWTAMIDGLVRNGEMARALDLFREMQRDNVRPN---EVTIVCVLSACSQLGALELGRW 137 (488)
Q Consensus 64 g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~ 137 (488)
.+.++|.++|-.|.+-|.. +.-+|.+.|.+.|+.+.|+++-+.+.++.--+. ......+..-|...|-++.|+.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3444555555444433322 223444455555555555555554443210000 1122233344445555555555
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHH--------HHHHHHHHHHhcCChhHHHHHHHHHH
Q 036287 138 IHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVT--------TYNSLIAGLAMHGRSIEAVEMFREMI 209 (488)
Q Consensus 138 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~A~~l~~~m~ 209 (488)
+|..+.+.+ +.-.....-|+..|-+..+|++|..+-+++..-+.. .|--+...+....+.+.|..++.+..
T Consensus 129 ~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 129 IFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 555554433 112233344555555555555555554444332111 12223333334455555555555555
Q ss_pred HcCCCCCHHHH-HHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH
Q 036287 210 NQGIRPTKVTF-VGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPDHIM 287 (488)
Q Consensus 210 ~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~ 287 (488)
+.+ |+.+-- ..+.......|+++.|.+.++.+.+. +..--..+...|..+|...|+.++...++.++ ...+....
T Consensus 208 qa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 208 QAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred hhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence 532 222111 12334455555555555555555543 22222445555555666666666665555554 33333333
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHh---cCCChHHHHHHHHHHHhCCCccCCce
Q 036287 288 LGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYA---SSGKWKEAVQIRAKMKEAGVQKEPGC 356 (488)
Q Consensus 288 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~a~~~~~~m~~~g~~~~~~~ 356 (488)
-..+...-....-.+.|...+.+-+...|.- ..+..|+..-. ..|.+.+.+.+++.|....++..|.+
T Consensus 285 ~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~-~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~Y 355 (389)
T COG2956 285 ELMLADLIELQEGIDAAQAYLTRQLRRKPTM-RGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRY 355 (389)
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHhhCCcH-HHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCc
Confidence 3333333333444455555555555555543 33444444332 33557777888888877766655543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.2e-09 Score=97.63 Aligned_cols=329 Identities=13% Similarity=0.116 Sum_probs=153.7
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhhCCCCC---ceeeHHHHHHHHHHcCCHHHHHHHHhhcC----CCCHHHHHHHHH
Q 036287 17 NRSTRLKLVELYGKCGEFKDAMQLFDEMPECN---DVVASTVMINCYVEHGLVENAFEVFSRVK----VKDTVCWTAMID 89 (488)
Q Consensus 17 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~ 89 (488)
+..++..+|.+.+|-...+.|.+++.+..+.. +..++|.+|.+-.-..+ .++..+|. .||..|+|++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHH
Confidence 34455555555555555555555555443321 23344444443322222 22222222 455555555555
Q ss_pred HHHHcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHH-HHHHHHHHHH----cCC----CCcHhHHHH
Q 036287 90 GLVRNGEMAR----ALDLFREMQRDNVRPNEVTIVCVLSACSQLGALEL-GRWIHSYMGK----HRI----DLNHIVGGA 156 (488)
Q Consensus 90 ~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~----~g~----~~~~~~~~~ 156 (488)
+.++.|+++. |++++.+|++-|+.|...+|..+|..+.+-++..+ +..+...+.. ..+ +.|...+..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 5555554433 34444555555555555555555555555444422 2222222221 111 112233344
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccC--------C---HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036287 157 LINMYSRCGDIDKALQVFEEMKER--------D---VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLN 225 (488)
Q Consensus 157 li~~y~~~g~~~~A~~~~~~~~~~--------~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 225 (488)
.++.+....+.+-|.++-.-.... + ..-|..+....++....+.-+..|+.|.-.-.-|+..+...++.
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 444444555555555544333321 1 12234445555555666666666666665556666667777777
Q ss_pred HHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcC-C-------------------hHHHHH-HHHhC-CCCC
Q 036287 226 ACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVG-R-------------------PEEAYD-FITNM-KIAP 283 (488)
Q Consensus 226 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~-------------------~~~A~~-~~~~m-~~~p 283 (488)
|..-.+.++-..+++..+.. +|-.-......-+...+++.. + +.++.+ --.+| ....
T Consensus 442 A~~v~~~~e~ipRiw~D~~~-~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~ 520 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKE-YGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW 520 (625)
T ss_pred HHhhcCcchhHHHHHHHHHH-hhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC
Confidence 76666666666666655553 232222111112222222211 0 111100 01111 1222
Q ss_pred CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC---CCCc--hhHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 036287 284 DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCR---SADS--GTYVLLSNAYASSGKWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 284 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 350 (488)
.....+..+-.+.+.|..++|.+++..+.+.. |..+ .+..-|.+.-........|..+++-|...+.
T Consensus 521 ~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 521 PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 34444555555666777777777777665422 2221 1223444555556666777777776655444
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.9e-09 Score=98.65 Aligned_cols=278 Identities=14% Similarity=0.102 Sum_probs=147.2
Q ss_pred cCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHH
Q 036287 63 HGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIH 139 (488)
Q Consensus 63 ~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 139 (488)
.|++.+|++...+-. +..+..|..-+.+--+.|+.+.|-.++.+.-+..-.++.....+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 355555555554422 11223333333444445555555555555544311233333334444445555555555555
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCC-----------HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 036287 140 SYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD-----------VTTYNSLIAGLAMHGRSIEAVEMFREM 208 (488)
Q Consensus 140 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~l~~~m 208 (488)
..+.+.+ +.+..+.......|.+.|++.....++..+.+.. ..+|+.++.-....+..+.-...|+..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 5555444 3334444555555555555555555555554421 123444444333333333333333332
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHH
Q 036287 209 INQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM--KIAPDHI 286 (488)
Q Consensus 209 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~ 286 (488)
-.. .+-+...-.+++.-+.+.|+.++|.++.....+. +..|+.. ..-...+-++.+.-++..++- ..+.++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 221 2333344444445555555555555555555432 3333310 111122233333333322222 1222457
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 287 MLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 287 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
.+.+|...|.+++.+.+|...|+..++..|.. .+|..+..++.+.|+..+|.+++++..-.
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 88899999999999999999999888888755 79999999999999999999999887643
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.8e-09 Score=100.33 Aligned_cols=301 Identities=12% Similarity=0.050 Sum_probs=183.8
Q ss_pred eeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036287 51 VASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACS 127 (488)
Q Consensus 51 ~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 127 (488)
..|-....-+-..|++..|+.++.+.- ..+...|-+-+..-..+.++++|..+|.+.... .|+...|.--+..--
T Consensus 585 ~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er 662 (913)
T KOG0495|consen 585 ILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLER 662 (913)
T ss_pred hHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHH
Confidence 344444444455556655555555433 123445555555566666666666666655542 344444444444444
Q ss_pred hcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChhHHHHH
Q 036287 128 QLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE--R-DVTTYNSLIAGLAMHGRSIEAVEM 204 (488)
Q Consensus 128 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l 204 (488)
-+++.++|.++++..++.- +.-...|-.+...|-+.++++.|.+.|..-.+ | .+..|-.+...=-+.|+.-.|..+
T Consensus 663 ~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~i 741 (913)
T KOG0495|consen 663 YLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSI 741 (913)
T ss_pred HhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHH
Confidence 4555666666665555542 33344555555666666666666666554433 2 334555555555556666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCC
Q 036287 205 FREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPD 284 (488)
Q Consensus 205 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 284 (488)
|++....+ +-|...|...+..=.+.|..++|..+..+..+ .++.+...|..-|.+..+.++-..+.+.+++-. -|
T Consensus 742 ldrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~d 816 (913)
T KOG0495|consen 742 LDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HD 816 (913)
T ss_pred HHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CC
Confidence 66655542 33445555666666666666666666666654 334445556666666666655555555555443 35
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCCccCCceeEEEE
Q 036287 285 HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIEV 361 (488)
Q Consensus 285 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~ 361 (488)
+.+.-++...+-....++.|.+.|.+.++.+|++..+|.-+...+...|.-++-.++++..... .|.-|..|..+
T Consensus 817 phVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~av 891 (913)
T KOG0495|consen 817 PHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAV 891 (913)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHH
Confidence 5666667777778888999999999999999999999999999999999999999998877653 34455566533
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-09 Score=97.17 Aligned_cols=262 Identities=15% Similarity=0.129 Sum_probs=176.1
Q ss_pred cCChHHHHHHHhhCCCCC--ceeeHHHHHHHHHHcCCHHHHHHHHhhcC-CCCH------HHHHHHHHHHHHcCCHHHHH
Q 036287 31 CGEFKDAMQLFDEMPECN--DVVASTVMINCYVEHGLVENAFEVFSRVK-VKDT------VCWTAMIDGLVRNGEMARAL 101 (488)
Q Consensus 31 ~g~~~~A~~~~~~m~~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~~~-~~~~------~~~~~li~~~~~~g~~~~A~ 101 (488)
..+.++|.++|-+|.+.+ +..+.-+|.+.|.+.|.+|.|+++-..+. .||. .+.-.|..-|...|-++.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 457788888888877644 34445577788888888888888877765 3432 23445667777888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCc----HhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036287 102 DLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLN----HIVGGALINMYSRCGDIDKALQVFEEM 177 (488)
Q Consensus 102 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~~ 177 (488)
.+|..+.+.| ..-......++..|-...++++|..+-..+.+.+-++. ...|.-|...+....+++.|..++.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 8888877754 33456677778888888888888888887777664433 233455666666677788888888776
Q ss_pred ccCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChh
Q 036287 178 KERDV---TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIE 254 (488)
Q Consensus 178 ~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 254 (488)
.+.|. ..--.+...+...|+++.|++.++...+.+..--..+...|..+|.+.|+.+++..++..+.+. .+...
T Consensus 207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~ 283 (389)
T COG2956 207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGAD 283 (389)
T ss_pred HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCcc
Confidence 65332 3334455667778888888888888877654444556667777888888888888888777743 44444
Q ss_pred hHHHHHHHHHhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHH
Q 036287 255 HYGCIVDLLSRVGRPEEAYDFI-TNMKIAPDHIMLGSLLSACK 296 (488)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~~~~ 296 (488)
.-..|.+.-....-.+.|...+ +.+.-+|+...+..++..-.
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l 326 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHL 326 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhh
Confidence 4455555544444455555444 44466788777777776543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-09 Score=109.77 Aligned_cols=309 Identities=16% Similarity=0.150 Sum_probs=139.2
Q ss_pred eeeHHHHHHHHHHcCCHHHHHHHHhhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHH
Q 036287 50 VVASTVMINCYVEHGLVENAFEVFSRVKVKD------TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNE--VTIVC 121 (488)
Q Consensus 50 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ 121 (488)
+++.+.|.+-|.-.|+++.++.+...+...+ ..+|-.+.++|...|++++|...|.+..+.. ||. ..+..
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~G 347 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVG 347 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccc
Confidence 3334444444444444444444444333111 1233444444444444444444444443321 222 22223
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC----CHHHHHHHHHhcccC---CHHHHHHHHHHHHh
Q 036287 122 VLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCG----DIDKALQVFEEMKER---DVTTYNSLIAGLAM 194 (488)
Q Consensus 122 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g----~~~~A~~~~~~~~~~---~~~~~~~li~~~~~ 194 (488)
+...+...|+++.+...|+.+.+.. +.+..+...|...|+..+ ..+.|..++.+..++ |...|-.+...|-+
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ 426 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence 3344444444444444444444432 223333344444444332 233333333333321 33334333333332
Q ss_pred cCChhHHHHHHHHHH----HcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccC--cccCh------hhHHHHHHH
Q 036287 195 HGRSIEAVEMFREMI----NQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYG--IEPQI------EHYGCIVDL 262 (488)
Q Consensus 195 ~g~~~~A~~l~~~m~----~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~~------~~~~~li~~ 262 (488)
++...++..|.... ..+-.+.....+.+.......|+++.|...|........ ..++. .+--.+...
T Consensus 427 -~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 -TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred -cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 22222244443322 223334444555555555555666666665555542100 11111 111223344
Q ss_pred HHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHH
Q 036287 263 LSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQ 340 (488)
Q Consensus 263 ~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 340 (488)
+-..++.+.|.+.+..+ ...|. ...|--++......++..+|...++.+++.+..++.++..+++.|.+...|..|.+
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k 585 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKK 585 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccccc
Confidence 44455556666665555 33343 22333333333344566677777777777776677777777777777777777777
Q ss_pred HHHHHHhCCCccCCceeEEEEC
Q 036287 341 IRAKMKEAGVQKEPGCSSIEVN 362 (488)
Q Consensus 341 ~~~~m~~~g~~~~~~~s~~~~~ 362 (488)
-|+...++-...+..+|.+.++
T Consensus 586 ~f~~i~~~~~~~~D~YsliaLG 607 (1018)
T KOG2002|consen 586 KFETILKKTSTKTDAYSLIALG 607 (1018)
T ss_pred HHHHHHhhhccCCchhHHHHhh
Confidence 6666655544333334444333
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.7e-10 Score=102.64 Aligned_cols=211 Identities=13% Similarity=0.135 Sum_probs=158.6
Q ss_pred CchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHH
Q 036287 130 GALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFR 206 (488)
Q Consensus 130 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 206 (488)
|+.-.+.+-++..++.... +...|--+..+|....+.++-.+.|+...+ .|..+|..-.+.+.-.+++++|..=|+
T Consensus 340 g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred CCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555544322 223355566677888888888888877664 355677777777777888999999999
Q ss_pred HHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 036287 207 EMINQGIRP-TKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD 284 (488)
Q Consensus 207 ~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 284 (488)
+.+. +.| +...|..+-.+..+.+.++++...|+...+ .++..+++|+.....+...+++++|.+.|+.. .+.|+
T Consensus 419 Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 419 KAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 8887 444 345666666677788999999999999997 55666889999999999999999999999876 44443
Q ss_pred ---------HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHH
Q 036287 285 ---------HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMK 346 (488)
Q Consensus 285 ---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 346 (488)
+.+-.+++..- =.+++..|..+++++++++|....+|..|...-...|+.++|+++|++-.
T Consensus 495 ~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 22222332222 23899999999999999999999999999999999999999999999754
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-09 Score=111.67 Aligned_cols=257 Identities=14% Similarity=0.066 Sum_probs=186.6
Q ss_pred CHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh---------cCchHHHHHHHHHHHH
Q 036287 80 DTVCWTAMIDGLVR-----NGEMARALDLFREMQRDNVRPN-EVTIVCVLSACSQ---------LGALELGRWIHSYMGK 144 (488)
Q Consensus 80 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~ 144 (488)
+..+|...+.+-.. .+..++|+.+|++..+. .|+ ...+..+..++.. .+++++|...++.+++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 55666666665322 13467999999999885 354 4455555544432 2447899999999998
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-HH
Q 036287 145 HRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE--R-DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKV-TF 220 (488)
Q Consensus 145 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~ 220 (488)
.. +.+..++..+..++...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+.. .+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 86 55778888899999999999999999999775 3 4668888999999999999999999999985 45432 23
Q ss_pred HHHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHH
Q 036287 221 VGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPDH-IMLGSLLSACKI 297 (488)
Q Consensus 221 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~ 297 (488)
..++..+...|++++|...+.++.+. ..|+ +..+..+..+|...|++++|...++++ +..|+. ..++.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 33444566688999999999988742 2343 555777888999999999999999987 455553 444555556666
Q ss_pred hCChhHHHHHHHHHHhcC---CCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 298 HGKLQLGEQIAKRLLDCR---SADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 298 ~g~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
.| +.|...++.+.+.. |.++. .+...|+-.|+-+.+... +++.+.|
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPG---LLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCch---HHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 66 47888788877643 44433 366677778887777776 7777654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.7e-09 Score=96.06 Aligned_cols=277 Identities=14% Similarity=0.078 Sum_probs=224.4
Q ss_pred cCChHHHHHHHhhCCCCCc--eeeHHHHHHHHHHcCCHHHHHHHHhhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHH
Q 036287 31 CGEFKDAMQLFDEMPECND--VVASTVMINCYVEHGLVENAFEVFSRVKVK----DTVCWTAMIDGLVRNGEMARALDLF 104 (488)
Q Consensus 31 ~g~~~~A~~~~~~m~~~~~--~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~ 104 (488)
.|++..|+++..+-.+..+ ...|..-..+--+.|+.+.|-..+.+..++ +....-+........|++..|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 6999999999988665432 344445556667889999999999887644 4456777788899999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcH-------hHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036287 105 REMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNH-------IVGGALINMYSRCGDIDKALQVFEEM 177 (488)
Q Consensus 105 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~y~~~g~~~~A~~~~~~~ 177 (488)
.++.+.+ +-++........+|.+.|++.....+...+.+.|.-.+. .++..+++-....+..+.-...++..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 9999876 446778889999999999999999999999999865553 45666666655556666656677777
Q ss_pred cc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChh
Q 036287 178 KE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIE 254 (488)
Q Consensus 178 ~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 254 (488)
+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+ ...+-.+.+.++.+.-.+..+.-.+.++..| .
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~ 329 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--L 329 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--h
Confidence 64 4677777888899999999999999999999877776 2233456777888777777777776555555 6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhc
Q 036287 255 HYGCIVDLLSRVGRPEEAYDFITNM-KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDC 314 (488)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 314 (488)
.+..|...|.+.+.+.+|.+.|+.. +.+|+...|+.+..++.+.|+.++|.+..++.+-.
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 7888999999999999999999987 88999999999999999999999999999998753
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.4e-12 Score=84.27 Aligned_cols=50 Identities=26% Similarity=0.603 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 036287 79 KDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQ 128 (488)
Q Consensus 79 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 128 (488)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999864
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.7e-12 Score=82.84 Aligned_cols=50 Identities=38% Similarity=0.661 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 036287 180 RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSH 229 (488)
Q Consensus 180 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 229 (488)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999874
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-08 Score=97.82 Aligned_cols=318 Identities=11% Similarity=0.032 Sum_probs=242.5
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC------------------------
Q 036287 24 LVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK------------------------ 77 (488)
Q Consensus 24 li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~------------------------ 77 (488)
|.-+|++..-++.|.++++...+ +.+...|.+-...=-.+|+.+...++.++-.
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 34456667778888888877655 3357777776666666777776666655431
Q ss_pred --------------------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHH
Q 036287 78 --------------------VK-DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGR 136 (488)
Q Consensus 78 --------------------~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 136 (488)
+. --.+|+.-...|.+.+.++-|..+|...++. .+-+...|..+...--..|..+.-.
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHH
Confidence 00 1225666666677777777788888777764 3445566666666656677888888
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 036287 137 WIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGI 213 (488)
Q Consensus 137 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 213 (488)
.+++.++..- +.....|-....-+-..|++..|+.++.+.-+ .+...|-+-+..-..+..++.|..+|.+... .
T Consensus 571 Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~ 647 (913)
T KOG0495|consen 571 ALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--I 647 (913)
T ss_pred HHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--c
Confidence 8888887764 44555666667777778999999988887765 3567888888888899999999999998877 5
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHH
Q 036287 214 RPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGS 290 (488)
Q Consensus 214 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ 290 (488)
.|+...|..-+..-.-.+..++|.++++...+. -|+ ...|..+.+.+-+.++++.|.+.|..- ..-|+ ...|-.
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~---fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWll 724 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALKS---FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLL 724 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh---CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHH
Confidence 677777776666666788999999999988864 344 678888899999999999998888765 55555 678888
Q ss_pred HHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 291 LLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 291 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
|...--+.|++-+|..++++..-.+|.+...|...+.+-.+.|..+.|..+..+..+.
T Consensus 725 LakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888889999999999999999999999999999999999999999999888776553
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.8e-09 Score=97.33 Aligned_cols=161 Identities=12% Similarity=0.065 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 036287 81 TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINM 160 (488)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 160 (488)
...+..+...|...|++++|+..+++..+.. +.+...+..+...+...|+++.|.+.+....+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3455566666666666666666666665542 2334455555555666666666666666655543 2233444555555
Q ss_pred HHhcCCHHHHHHHHHhcccC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 036287 161 YSRCGDIDKALQVFEEMKER-----DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDL 235 (488)
Q Consensus 161 y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 235 (488)
|...|++++|.+.|++.... ....+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 55555555555555554321 12334444445555555555555555554431 1122334444444444455555
Q ss_pred HHHHHHhcc
Q 036287 236 GFEIFQSMT 244 (488)
Q Consensus 236 a~~~~~~~~ 244 (488)
|...++...
T Consensus 188 A~~~~~~~~ 196 (234)
T TIGR02521 188 ARAYLERYQ 196 (234)
T ss_pred HHHHHHHHH
Confidence 555444444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-08 Score=102.38 Aligned_cols=345 Identities=14% Similarity=0.104 Sum_probs=252.5
Q ss_pred HhHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhC--CCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCC-
Q 036287 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEM--PECNDVVASTVMINCYVEHGLVENAFEVFSRVKV- 78 (488)
Q Consensus 2 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m--~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~- 78 (488)
|..|+..+++.. +.....|.+|...|-..|+.+++...+--. ..+.|...|-.+.....+.|.+++|.-.|.+..+
T Consensus 158 A~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~ 236 (895)
T KOG2076|consen 158 AEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQA 236 (895)
T ss_pred HHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 456777777765 556778999999999999999998876443 3455689999999999999999999999998763
Q ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCchHHHHHHHHHHHHcC-CCCcH
Q 036287 79 --KDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEV----TIVCVLSACSQLGALELGRWIHSYMGKHR-IDLNH 151 (488)
Q Consensus 79 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~ 151 (488)
++....--=+..|-+.|+...|...|.++.....+.|.. +...++..+...++-+.|.+++......+ -..+.
T Consensus 237 ~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ 316 (895)
T KOG2076|consen 237 NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASL 316 (895)
T ss_pred CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccc
Confidence 344444445668899999999999999999874322322 22334566777777788888888776632 24456
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccc----CC---------------------------HHHHHHHHHHHHhcCChhH
Q 036287 152 IVGGALINMYSRCGDIDKALQVFEEMKE----RD---------------------------VTTYNSLIAGLAMHGRSIE 200 (488)
Q Consensus 152 ~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~---------------------------~~~~~~li~~~~~~g~~~~ 200 (488)
..++.++.+|.+...++.|......+.. +| ..... +.-++......+.
T Consensus 317 ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r-l~icL~~L~~~e~ 395 (895)
T KOG2076|consen 317 EDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR-LMICLVHLKEREL 395 (895)
T ss_pred cHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh-Hhhhhhcccccch
Confidence 6778899999999999999877665542 11 11211 2223334444444
Q ss_pred HHHHHHHHHHcCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHh
Q 036287 201 AVEMFREMINQGIRP--TKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITN 278 (488)
Q Consensus 201 A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 278 (488)
...+.....+.++.| +...|.-+..++...|.+.+|..+|..+... ...-+..+|--+..+|-..|..++|.+.++.
T Consensus 396 ~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~k 474 (895)
T KOG2076|consen 396 LEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-EGYQNAFVWYKLARCYMELGEYEEAIEFYEK 474 (895)
T ss_pred HHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-ccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 444444455555444 4556888999999999999999999999864 3333477899999999999999999999998
Q ss_pred C-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcC---------CCCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 279 M-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCR---------SADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 279 m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
. ...|+ ...--+|...+...|+.++|.+.++.+..-+ +++..........|...|+.++-..+-.+|..
T Consensus 475 vl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 475 VLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 8 55664 5566677778889999999999999876433 22334556778889999999988877777765
Q ss_pred CC
Q 036287 348 AG 349 (488)
Q Consensus 348 ~g 349 (488)
..
T Consensus 555 ~~ 556 (895)
T KOG2076|consen 555 DF 556 (895)
T ss_pred HH
Confidence 43
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-09 Score=110.59 Aligned_cols=256 Identities=11% Similarity=0.034 Sum_probs=182.2
Q ss_pred ceeeHHHHHHHHHH-----cCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHCC
Q 036287 49 DVVASTVMINCYVE-----HGLVENAFEVFSRVKV--K-DTVCWTAMIDGLVR---------NGEMARALDLFREMQRDN 111 (488)
Q Consensus 49 ~~~~~~~li~~~~~-----~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g 111 (488)
+...|...+.+-.. .+++++|...|++... | +...|..+..+|.. .+++++|...+++..+.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld 334 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD 334 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC
Confidence 35556666665422 2346799999998763 3 45567766665542 345899999999999865
Q ss_pred CCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc--CC-HHHHHHH
Q 036287 112 VRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE--RD-VTTYNSL 188 (488)
Q Consensus 112 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~l 188 (488)
+-+...+..+...+...|++++|...++++++.+ +.+...+..+...|...|++++|...+++..+ |+ ...+..+
T Consensus 335 -P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~ 412 (553)
T PRK12370 335 -HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITK 412 (553)
T ss_pred -CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHH
Confidence 4467788888888899999999999999999986 55677888899999999999999999999875 33 2234445
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhc
Q 036287 189 IAGLAMHGRSIEAVEMFREMINQGIRPT-KVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRV 266 (488)
Q Consensus 189 i~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~ 266 (488)
+..+...|++++|+..+++..... +|+ ...+..+..++...|+.++|...+..+... .|+ ....+.+...|.+.
T Consensus 413 ~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 413 LWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cchhHHHHHHHHHHHhcc
Confidence 555777899999999999988753 354 344566777788999999999999887642 444 44455666677777
Q ss_pred CChHHHHHHHHhC----CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC
Q 036287 267 GRPEEAYDFITNM----KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCR 315 (488)
Q Consensus 267 g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 315 (488)
| ++|...++.+ ...|...-+.. ..+.-+|+.+.+... +++.+.+
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGLLP--LVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchHHH--HHHHHHhhhHHHHHH-HHhhccc
Confidence 7 4676666655 33343333433 344556776766655 7776644
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4e-09 Score=100.42 Aligned_cols=261 Identities=12% Similarity=0.037 Sum_probs=209.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 036287 81 TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINM 160 (488)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 160 (488)
+...-.-..-+...+++.+..++++...+.. ++....+..-|..+...|+..+-..+=..+++.- |....+|-++.--
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCY 321 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHH
Confidence 3334445556778899999999999988864 5666666666778888888777777666677653 6667889999999
Q ss_pred HHhcCCHHHHHHHHHhcccCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 036287 161 YSRCGDIDKALQVFEEMKERD---VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGF 237 (488)
Q Consensus 161 y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 237 (488)
|.-.|+.++|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-....+.-+.--|.+.+..+.|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHH
Confidence 999999999999999876544 368999999999999999999999887764 2222233444555688899999999
Q ss_pred HHHHhcccccCcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC--C---C---CC-CHHHHHHHHHHHHHhCChhHHHHH
Q 036287 238 EIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM--K---I---AP-DHIMLGSLLSACKIHGKLQLGEQI 307 (488)
Q Consensus 238 ~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~---~---~p-~~~~~~~ll~~~~~~g~~~~a~~~ 307 (488)
++|.... ++.|+ +.+.+-+.-..-..+.+.+|..+|+.. + + .+ -..+++.|..+|++.+.+++|+..
T Consensus 401 ~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 401 KFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 9999987 56664 667777777777788999999998876 1 1 11 245688889999999999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 308 AKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 308 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
+++.+.+.|.++.+|.+++-.|...|+++.|.+.|.+..-
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999987643
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-09 Score=108.15 Aligned_cols=249 Identities=14% Similarity=0.091 Sum_probs=158.4
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCC---ceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCC
Q 036287 4 EIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECN---DVVASTVMINCYVEHGLVENAFEVFSRVKVKD 80 (488)
Q Consensus 4 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~ 80 (488)
.++..+...|+.|+.++|..||.-|+..|+++.|- +|.-|..++ +...++.++.+....++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46778889999999999999999999999999999 888887654 5678899999888888877665 778
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH-HH-------HCCCCCCHHHHHHHHHH--------------HHhcCchHHHHHH
Q 036287 81 TVCWTAMIDGLVRNGEMARALDLFRE-MQ-------RDNVRPNEVTIVCVLSA--------------CSQLGALELGRWI 138 (488)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~p~~~t~~~ll~~--------------~~~~~~~~~a~~~ 138 (488)
..+|..|..+|.+.|+... ++..++ |. ..|+..-..-+-..+.+ ....|-++.+.++
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998765 222222 21 12221111111111111 1122222333333
Q ss_pred HHHHHHcC-CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 036287 139 HSYMGKHR-IDLNHIVGGALINMYSRCGDIDKALQVFEEMKE-RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPT 216 (488)
Q Consensus 139 ~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 216 (488)
...+.... ..|..+ + |=.+-.....+++-...-....+ ++..++.+.+..-...|+.+.|..++.+|.+.|++.+
T Consensus 162 l~~~Pvsa~~~p~~v-f--Lrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPFQV-F--LRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred HhhCCcccccchHHH-H--HHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 22221110 001111 0 11111111223333222233333 7788888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCC
Q 036287 217 KVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGR 268 (488)
Q Consensus 217 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 268 (488)
..-|..|+-+ .++...+..+...|.+ .|+.|+..|+.-.+-.+...|.
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe-~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQE-KGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHH-hcCCCCcchhHHHHHhhhcchh
Confidence 8888777765 6777777777777775 4888888888766655555443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.7e-09 Score=103.30 Aligned_cols=232 Identities=19% Similarity=0.207 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHc-----CC-CCcHh-HHHHHHHHHHhcCCHHHHHHHHHhccc-------C-
Q 036287 116 EVTIVCVLSACSQLGALELGRWIHSYMGKH-----RI-DLNHI-VGGALINMYSRCGDIDKALQVFEEMKE-------R- 180 (488)
Q Consensus 116 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~-~~~~~-~~~~li~~y~~~g~~~~A~~~~~~~~~-------~- 180 (488)
..|+..+...|...|+++.|..+++..++. |. .|.+. ..+.+..+|...+++++|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 457777889999999999999999988765 21 22322 334577899999999999999988763 1
Q ss_pred ---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-----CC-CCCHH-HHHHHHHHHhccCCHHHHHHHHHhcccccC--
Q 036287 181 ---DVTTYNSLIAGLAMHGRSIEAVEMFREMINQ-----GI-RPTKV-TFVGVLNACSHGGLVDLGFEIFQSMTRDYG-- 248 (488)
Q Consensus 181 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~-~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-- 248 (488)
-..+++.|..+|.+.|++++|...+++..+- |. .|... -++.+...|...+.+++|..++....+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2357888888999999999988888776541 22 22322 345566678899999999999887665332
Q ss_pred cccC----hhhHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHh-
Q 036287 249 IEPQ----IEHYGCIVDLLSRVGRPEEAYDFITNM---------KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLD- 313 (488)
Q Consensus 249 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~- 313 (488)
..++ ..+++.|...|...|++++|.+++++. +..+. ...++.|..+|...++.++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 1222 468999999999999999999999887 12222 56678889999999999999999988765
Q ss_pred ---cCC---CCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 314 ---CRS---ADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 314 ---~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
.+| +...+|..|+.+|.+.|++++|.++.+....
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 344 3456788999999999999999999988753
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.7e-08 Score=89.78 Aligned_cols=295 Identities=12% Similarity=0.008 Sum_probs=212.6
Q ss_pred hHHHHHHHHHhc--CChHHHHHHHhhC--CC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHH---HHHHHHH
Q 036287 20 TRLKLVELYGKC--GEFKDAMQLFDEM--PE--CNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVC---WTAMIDG 90 (488)
Q Consensus 20 ~~~~li~~y~~~--g~~~~A~~~~~~m--~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~---~~~li~~ 90 (488)
+...-+.+|+.+ ++-..|...+-.+ .. ++++....++...+...|+.++|+..|++...-|+.+ ...-.-.
T Consensus 196 wls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~L 275 (564)
T KOG1174|consen 196 WLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVL 275 (564)
T ss_pred HHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHH
Confidence 333344555443 4444554444322 22 4568888999999999999999999999876444332 2222334
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHH
Q 036287 91 LVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKA 170 (488)
Q Consensus 91 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 170 (488)
+.+.|++++...+...+.... +-+...|..-+.......+++.|..+-+..++.. +.++..+-.-..+....|+.++|
T Consensus 276 L~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A 353 (564)
T KOG1174|consen 276 LGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQA 353 (564)
T ss_pred HHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHH
Confidence 567888888888877776532 2334445445555566778888888888887765 33445554445677788999999
Q ss_pred HHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHHh-ccCCHHHHHHHHHhccc
Q 036287 171 LQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVL-NACS-HGGLVDLGFEIFQSMTR 245 (488)
Q Consensus 171 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~~~~~~~ 245 (488)
.-.|+.... -+..+|.-++..|...|++.+|.-+-+...+. ++.+..+...+. ..|. ....-++|.+++++-.
T Consensus 354 ~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L- 431 (564)
T KOG1174|consen 354 VIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL- 431 (564)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh-
Confidence 999987553 47789999999999999999999887776654 444555555442 3333 2334588999998876
Q ss_pred ccCcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCch
Q 036287 246 DYGIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSG 320 (488)
Q Consensus 246 ~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 320 (488)
.+.|+ ....+.+...+...|..++++.++++. ...||....+.|...+...+.+++|...|..++..+|.+..
T Consensus 432 --~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 432 --KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred --ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 45777 566778888999999999999999887 77889999999999999999999999999999999998843
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-09 Score=96.48 Aligned_cols=229 Identities=14% Similarity=0.123 Sum_probs=155.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc
Q 036287 85 TAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRC 164 (488)
Q Consensus 85 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 164 (488)
+.|..+|.+.|.+.+|.+.|+.-+.. .|-+.||..+-++|.+..+++.|..++.+-++. ++.++.........+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 55667777777777777777776664 455666777777777777777777777766654 244555555566666666
Q ss_pred CCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 036287 165 GDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQ 241 (488)
Q Consensus 165 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 241 (488)
++.++|.++++...+ .++.+...+..+|.-.++++-|+..|+++.+.|+. +...|+.+.-+|...+++|-++.-|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 777777777666554 24444555555666666677777777776666643 34445555555555555555554444
Q ss_pred hcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchh
Q 036287 242 SMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGT 321 (488)
Q Consensus 242 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 321 (488)
.... -..+.++ -..+|..+.......||+..|.+.|+-.+..+|++..+
T Consensus 383 RAls-------------------tat~~~~------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 383 RALS-------------------TATQPGQ------------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHh-------------------hccCcch------------hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 4331 1111111 25667777777778899999999999999999999999
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 322 YVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 322 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
++.|.-.-.+.|+.++|..++...+..
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 999999999999999999999987664
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.3e-07 Score=86.82 Aligned_cols=341 Identities=13% Similarity=0.128 Sum_probs=240.9
Q ss_pred HhHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC-CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC--C
Q 036287 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE-CNDVVASTVMINCYVEHGLVENAFEVFSRVK--V 78 (488)
Q Consensus 2 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~ 78 (488)
|+-+++..+..-...|- .|-..+.|=-..|++..|+++|++-.+ .++..+|++.|.-=.+-..++.|..++++.. .
T Consensus 126 ARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H 204 (677)
T KOG1915|consen 126 ARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH 204 (677)
T ss_pred HHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec
Confidence 55666666654322232 344445555567888888888876544 4447888888888888888888888888754 7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCchHHHHHHHHHHHHcC--------
Q 036287 79 KDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACS----QLGALELGRWIHSYMGKHR-------- 146 (488)
Q Consensus 79 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~g-------- 146 (488)
|++.+|--...---++|+...|..+|...... -.|...-..+..+++ +....+.|.-+++..++.-
T Consensus 205 P~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL 282 (677)
T KOG1915|consen 205 PKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEEL 282 (677)
T ss_pred ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Confidence 78888877777777888888888888777653 122322233333332 2334455555544443321
Q ss_pred -----------------------------------CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCH---HHHH
Q 036287 147 -----------------------------------IDLNHIVGGALINMYSRCGDIDKALQVFEEMKE--RDV---TTYN 186 (488)
Q Consensus 147 -----------------------------------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~---~~~~ 186 (488)
-+.|-.+|--.+..-...|+.+...++|++... |.. ..|.
T Consensus 283 ~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~ 362 (677)
T KOG1915|consen 283 YKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWR 362 (677)
T ss_pred HHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHH
Confidence 023344555666666778999999999998764 211 1232
Q ss_pred HHHHH--------HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh----ccCCHHHHHHHHHhcccccCcccChh
Q 036287 187 SLIAG--------LAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACS----HGGLVDLGFEIFQSMTRDYGIEPQIE 254 (488)
Q Consensus 187 ~li~~--------~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~----~~g~~~~a~~~~~~~~~~~~~~p~~~ 254 (488)
-.|-. =....+.+.+.++|+..++. ++-...||..+--.|+ +..++..|.+++.... |.-|...
T Consensus 363 RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~K 438 (677)
T KOG1915|consen 363 RYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDK 438 (677)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchh
Confidence 22211 12467899999999999984 5666788876655544 5678999999999988 8899999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC--chhHHHHHHHHh
Q 036287 255 HYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD--SGTYVLLSNAYA 330 (488)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~ 330 (488)
++...|+.=.+.+.++....++++. ...| |-.+|......-...|+.+.|..+|+-+++....+ ...+...++.-.
T Consensus 439 lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi 518 (677)
T KOG1915|consen 439 LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEI 518 (677)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhh
Confidence 9999999999999999999999987 5666 57899999888899999999999999988744222 135666777778
Q ss_pred cCCChHHHHHHHHHHHhCC
Q 036287 331 SSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 331 ~~g~~~~a~~~~~~m~~~g 349 (488)
..|.++.|..+++.+.+..
T Consensus 519 ~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 519 EEGEFEKARALYERLLDRT 537 (677)
T ss_pred hcchHHHHHHHHHHHHHhc
Confidence 8999999999999998753
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.2e-08 Score=92.55 Aligned_cols=221 Identities=14% Similarity=-0.020 Sum_probs=145.0
Q ss_pred CCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 036287 95 GEMARALDLFREMQRDN-VRPN--EVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKAL 171 (488)
Q Consensus 95 g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 171 (488)
+..+.++.-+.+++... ..|+ ...|......+...|+.++|...+...++.. +.+..+++.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566777777776532 1222 3446666677778888888888888887765 446778888888888888888888
Q ss_pred HHHHhccc--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccC
Q 036287 172 QVFEEMKE--R-DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYG 248 (488)
Q Consensus 172 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 248 (488)
..|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 88888754 2 4567888888888888999999988888874 45443222222234456778888888866543 2
Q ss_pred cccChhhHHHHHHHHHhcCChHHH--HHHHHhC-CC----CC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCch
Q 036287 249 IEPQIEHYGCIVDLLSRVGRPEEA--YDFITNM-KI----AP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSG 320 (488)
Q Consensus 249 ~~p~~~~~~~li~~~~~~g~~~~A--~~~~~~m-~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 320 (488)
..|+...+ .++.. ..|++.++ .+.+.+- .. .| ....|..+...+...|++++|...|+++++.+|++..
T Consensus 195 ~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 23332222 23332 34444433 3222221 11 12 2457888899999999999999999999999976644
Q ss_pred hHH
Q 036287 321 TYV 323 (488)
Q Consensus 321 ~~~ 323 (488)
-+.
T Consensus 272 e~~ 274 (296)
T PRK11189 272 EHR 274 (296)
T ss_pred HHH
Confidence 333
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.9e-08 Score=98.42 Aligned_cols=231 Identities=13% Similarity=0.113 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCCCHHH-HHHHHHHHHhcCchHHHHHHHHHHHHc-----C--CC
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRD-----N-VRPNEVT-IVCVLSACSQLGALELGRWIHSYMGKH-----R--ID 148 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g--~~ 148 (488)
+...|...|...|+++.|+.++++.++. | ..|...+ ...+...|...+++++|..+|+.+... | .+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4445889999999999999999988764 2 1334333 334677888999999999999988653 2 12
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhccc----------CCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHc---CCC
Q 036287 149 LNHIVGGALINMYSRCGDIDKALQVFEEMKE----------RDV-TTYNSLIAGLAMHGRSIEAVEMFREMINQ---GIR 214 (488)
Q Consensus 149 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----------~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~ 214 (488)
.-..+++.|..+|.+.|++++|...+++..+ +.+ ...+.++..+...+++++|..++++..+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2245667778899999999999888876542 222 24666777888999999999999876642 133
Q ss_pred CCH----HHHHHHHHHHhccCCHHHHHHHHHhccccc-----CcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-----
Q 036287 215 PTK----VTFVGVLNACSHGGLVDLGFEIFQSMTRDY-----GIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM----- 279 (488)
Q Consensus 215 p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m----- 279 (488)
++. -++..+...|...|++++|.++|.++.... +..+. ..+++.|...|.+.++..+|.++|.+.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 333 468889999999999999999999887532 11222 467788999999999999999888775
Q ss_pred ---CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHh
Q 036287 280 ---KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLD 313 (488)
Q Consensus 280 ---~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 313 (488)
+-.|+ ..+|..|...|...|+++.|+++.+.+..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 33444 57899999999999999999999998875
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.7e-08 Score=90.64 Aligned_cols=288 Identities=14% Similarity=0.125 Sum_probs=201.1
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcC--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC
Q 036287 55 VMINCYVEHGLVENAFEVFSRVK--VKD-TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNE-VTIVCVLSACSQLG 130 (488)
Q Consensus 55 ~li~~~~~~g~~~~A~~~f~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~ 130 (488)
...+-|.+.|.+++|++.+.... .|| .+.|.....+|...|+|+++.+--.+.++ +.|+- ..+..-.++.-.+|
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhhc
Confidence 44556788899999999998865 456 77888899999999999999888887777 45663 45666677888888
Q ss_pred chHHHHHH----------------------HHH--------HHH-cC--CCCcHhHHHHHHHHHH---------hcC---
Q 036287 131 ALELGRWI----------------------HSY--------MGK-HR--IDLNHIVGGALINMYS---------RCG--- 165 (488)
Q Consensus 131 ~~~~a~~~----------------------~~~--------~~~-~g--~~~~~~~~~~li~~y~---------~~g--- 165 (488)
+++++..= +.. -.+ .+ +-|+.....+....+. +..
T Consensus 198 ~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksD 277 (606)
T KOG0547|consen 198 KFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSD 277 (606)
T ss_pred cHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccch
Confidence 88766531 110 001 11 1122222111111110 000
Q ss_pred -CHHHHHHHHHhc------------cc----------CC---------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 036287 166 -DIDKALQVFEEM------------KE----------RD---------VTTYNSLIAGLAMHGRSIEAVEMFREMINQGI 213 (488)
Q Consensus 166 -~~~~A~~~~~~~------------~~----------~~---------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 213 (488)
.+.++.+.+..- .+ .+ +.+.+.-..-+.-.|+.-+|..-|+..+....
T Consensus 278 a~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~ 357 (606)
T KOG0547|consen 278 AALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDP 357 (606)
T ss_pred hhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCc
Confidence 011121111111 00 01 11112222224557899999999999998654
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCccc-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHH
Q 036287 214 RPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEP-QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGS 290 (488)
Q Consensus 214 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ 290 (488)
.++.. |..+..+|....+.++.++.|+... .+.| ++.+|..-..++.-.+++++|..-|++. .+.|+ +..|-.
T Consensus 358 ~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~---~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQ 433 (606)
T KOG0547|consen 358 AFNSL-YIKRAAAYADENQSEKMWKDFNKAE---DLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQ 433 (606)
T ss_pred ccchH-HHHHHHHHhhhhccHHHHHHHHHHH---hcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHH
Confidence 44432 7777888999999999999999987 4444 4677877788888889999999999988 77774 677777
Q ss_pred HHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 291 LLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 291 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
+.-+..+.+.++++...|++..+..|.-+..|+....++...++++.|.+.|+...+.
T Consensus 434 l~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 434 LCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 7777788889999999999999999999999999999999999999999999988663
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.7e-08 Score=94.44 Aligned_cols=212 Identities=18% Similarity=0.099 Sum_probs=154.5
Q ss_pred CchHHHHHHHHHHHHcC-CCCc--HhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHH
Q 036287 130 GALELGRWIHSYMGKHR-IDLN--HIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVE 203 (488)
Q Consensus 130 ~~~~~a~~~~~~~~~~g-~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 203 (488)
+..+.+..-+.+++... ..|+ ...+..+...|.+.|+.++|...|++..+ .+...|+.+...|...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 35566666676776532 2222 45677888899999999999999998765 467899999999999999999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC--C
Q 036287 204 MFREMINQGIRPT-KVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM--K 280 (488)
Q Consensus 204 l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~ 280 (488)
.|++..+. .|+ ..++..+..++...|++++|.+.|+...+ ..|+..........+...+++++|.+.+.+. .
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999984 554 56777788888999999999999999884 3555332222223345678899999999665 3
Q ss_pred CCCCHHHHHHHHHHHHHhCChhHHHHHHHHHH-------hcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 036287 281 IAPDHIMLGSLLSACKIHGKLQLGEQIAKRLL-------DCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 281 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 350 (488)
..|+...| .......|+...+ ..++.+. +..|..+.+|..++..|...|++++|...|++..+.++
T Consensus 195 ~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 33333322 2222345666554 3444444 34456667899999999999999999999999887543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.5e-07 Score=81.70 Aligned_cols=154 Identities=14% Similarity=0.029 Sum_probs=81.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHH-HHHH-hc
Q 036287 189 IAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIV-DLLS-RV 266 (488)
Q Consensus 189 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li-~~~~-~~ 266 (488)
...+.+.|++++|.-.|+..+.. -+-+...|..|+..|...|.+.+|...-+...+ -++.+..+.+.+. +.+. ..
T Consensus 341 G~lL~~~~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp 417 (564)
T KOG1174|consen 341 GRLLIALERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDP 417 (564)
T ss_pred cHHHHhccchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCc
Confidence 34455555666666666555542 123445555666666666666555554444432 2222233332221 1111 11
Q ss_pred CChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHH
Q 036287 267 GRPEEAYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAK 344 (488)
Q Consensus 267 g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 344 (488)
.--++|.+++++. .++|+ ....+.+...|...|..+.+..++++.+...|++ ...+.|.+.+...+.+.+|.+.|..
T Consensus 418 ~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 418 RMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred hhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 2234555555554 55565 3445555566666677777777777766666544 5666677777777777777666665
Q ss_pred HH
Q 036287 345 MK 346 (488)
Q Consensus 345 m~ 346 (488)
..
T Consensus 497 AL 498 (564)
T KOG1174|consen 497 AL 498 (564)
T ss_pred HH
Confidence 53
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-08 Score=90.89 Aligned_cols=226 Identities=14% Similarity=0.099 Sum_probs=180.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcC
Q 036287 54 TVMINCYVEHGLVENAFEVFSRVK--VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTI-VCVLSACSQLG 130 (488)
Q Consensus 54 ~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~ 130 (488)
+.+..+|.+.|-+.+|.+.|+.-. .|-+.||-.|-.+|.+-.++..|+.+|.+-++. .|-.+|| ..+.+.+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 578899999999999999998765 567789999999999999999999999988775 4555555 45778888999
Q ss_pred chHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 036287 131 ALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFRE 207 (488)
Q Consensus 131 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 207 (488)
+.+.+.++++...+.. +.++.....+...|.-.|+.+.|...++++.+ .+...|+.+.-+|.-.++++-++.-|++
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 9999999999998875 45666666677788889999999999998776 5778899999999999999999999999
Q ss_pred HHHcCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 036287 208 MINQGIRPTK--VTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD 284 (488)
Q Consensus 208 m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 284 (488)
.+..--.|+. ..|..+-......|++..|.+.|+.... .-......++.|.-.-.+.|++++|..+++.. .+.|+
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 8865444543 3455566666778888888888887764 22334677777777777888888888888776 34443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-07 Score=90.58 Aligned_cols=273 Identities=11% Similarity=0.014 Sum_probs=204.0
Q ss_pred eeeHHHHHHHHHHcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036287 50 VVASTVMINCYVEHGLVENAFEVFSRVKVK---DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSAC 126 (488)
Q Consensus 50 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 126 (488)
+.....-..-+...+++++..++++.+.+. +...+..=|.++...|+..+-..+=.+|.+. .|-.+.+|.++.--|
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHH
Confidence 556666667778888999999888887643 4556666777888899888888888888876 355678999998888
Q ss_pred HhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHH
Q 036287 127 SQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVE 203 (488)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 203 (488)
...|...+|++.+......+ +.-...|-.....|+-.|.-|.|...+....+ ..-..+--+.--|.+.+..+-|.+
T Consensus 323 l~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHH
Confidence 88899999999998876654 22355788888999999999999888766543 111112223334777889999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhccccc-Cc---c-cChhhHHHHHHHHHhcCChHHHHHHHHh
Q 036287 204 MFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDY-GI---E-PQIEHYGCIVDLLSRVGRPEEAYDFITN 278 (488)
Q Consensus 204 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~---~-p~~~~~~~li~~~~~~g~~~~A~~~~~~ 278 (488)
.|.+.... .+-|+...+-+.-...+.+.+.+|..+|+.....- .+ . -...+++.|..+|.+.+++++|+..+++
T Consensus 402 Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 402 FFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 99988773 23345555555555566788899999888776210 01 1 1345688899999999999999999998
Q ss_pred C-CC-CCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHH
Q 036287 279 M-KI-APDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLL 325 (488)
Q Consensus 279 m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 325 (488)
. .. +.|..++.++.-.+...|+++.|...|.+.+.+.|+|..+-..|
T Consensus 481 aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 481 ALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELL 529 (611)
T ss_pred HHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHH
Confidence 7 33 34688899999999999999999999999999999985443333
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.1e-07 Score=88.88 Aligned_cols=334 Identities=14% Similarity=0.090 Sum_probs=201.7
Q ss_pred hCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCC--CceeeHHHHHHHHHHcCCHHHHHHHHhhcC--C--CCHHHHH
Q 036287 12 LGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPEC--NDVVASTVMINCYVEHGLVENAFEVFSRVK--V--KDTVCWT 85 (488)
Q Consensus 12 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~--~~~~~~~ 85 (488)
.-+.-|..+|..|.-+...+|+++.+-+.|++...- +....|+.+...|..+|.-..|..+.+.-. . |+..+--
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 345568889999999999999999999999986541 236789999999999999889998887654 2 2222211
Q ss_pred HHH-HHHH-HcCCHHHH--------------------------------------------------HHHHHHHHHCCCC
Q 036287 86 AMI-DGLV-RNGEMARA--------------------------------------------------LDLFREMQRDNVR 113 (488)
Q Consensus 86 ~li-~~~~-~~g~~~~A--------------------------------------------------~~~~~~m~~~g~~ 113 (488)
.|+ ..|. +-+..+++ ++.+++..+.+ +
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~ 475 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-P 475 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-C
Confidence 111 1222 12333333 33333333322 1
Q ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccC--C----------
Q 036287 114 PNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER--D---------- 181 (488)
Q Consensus 114 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~---------- 181 (488)
-|+.....+.--++..++++.|.+...+..+.+-..+...|.-|.-.+...+++.+|+.+.+...+. +
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 1111111222223445556666666666655544555555555555556666666666555443320 0
Q ss_pred -----------HHHHHHHHHHHH------h-----------------cCChhHHHHHHHHHH--------HcC-------
Q 036287 182 -----------VTTYNSLIAGLA------M-----------------HGRSIEAVEMFREMI--------NQG------- 212 (488)
Q Consensus 182 -----------~~~~~~li~~~~------~-----------------~g~~~~A~~l~~~m~--------~~g------- 212 (488)
..+...++..+- + .++..+|.+..+++. ..|
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 011111111111 0 001111111111110 000
Q ss_pred --C--CCCH------HHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 036287 213 --I--RPTK------VTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KI 281 (488)
Q Consensus 213 --~--~p~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 281 (488)
+ .|+. ..+......+...+..++|...+.+... -.+.....|......+...|.+++|.+.|... -+
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 0 0111 0122233445555666666665555542 22233556666667788889999999988776 67
Q ss_pred CCC-HHHHHHHHHHHHHhCChhHHHH--HHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 282 APD-HIMLGSLLSACKIHGKLQLGEQ--IAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 282 ~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
.|+ +.+..++...+...|+...|.. ++..+++.+|.++.+|..|+.++-+.|+.++|.+.|....+.
T Consensus 714 dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 714 DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 776 7788999999999999998888 999999999999999999999999999999999999987664
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.5e-07 Score=93.31 Aligned_cols=147 Identities=13% Similarity=0.121 Sum_probs=103.6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhccccc-------------CcccCh--hhHHHHHHHHHh
Q 036287 201 AVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDY-------------GIEPQI--EHYGCIVDLLSR 265 (488)
Q Consensus 201 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-------------~~~p~~--~~~~~li~~~~~ 265 (488)
+...+..+...|+++ +|+.|-..|......+-..+++....... .-+|+. .++..+...|..
T Consensus 130 ~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~ 206 (517)
T PF12569_consen 130 LDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY 206 (517)
T ss_pred HHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH
Confidence 444555566666654 45555555555444444444443332110 112333 345667888889
Q ss_pred cCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHH
Q 036287 266 VGRPEEAYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRA 343 (488)
Q Consensus 266 ~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 343 (488)
.|++++|++++++. ...|+ +..|..-...+...|++++|...++.+.++++.|...-.-.+..+.++|+.++|.++..
T Consensus 207 ~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999876 66676 66777788888999999999999999999998887666677788889999999999998
Q ss_pred HHHhCCC
Q 036287 344 KMKEAGV 350 (488)
Q Consensus 344 ~m~~~g~ 350 (488)
.....+.
T Consensus 287 ~Ftr~~~ 293 (517)
T PF12569_consen 287 LFTREDV 293 (517)
T ss_pred hhcCCCC
Confidence 8877665
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.5e-06 Score=82.60 Aligned_cols=258 Identities=12% Similarity=0.042 Sum_probs=133.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc
Q 036287 89 DGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQ----LGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRC 164 (488)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 164 (488)
..+...|++++|.+.+++..+.. +.|...+.. ...+.. .+..+.+.+.+... ....+........+...+...
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHc
Confidence 34555666777777766666542 223323321 111222 23333333333331 111122233334455566677
Q ss_pred CCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHhccCCHHHHHH
Q 036287 165 GDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGI-RPTK--VTFVGVLNACSHGGLVDLGFE 238 (488)
Q Consensus 165 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~ 238 (488)
|++++|...+++..+ .+...+..+...|...|++++|...+++...... .|+. ..+..+...+...|+.++|..
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 777777777766553 2345566666667777777777777776665321 1222 223345566667777777777
Q ss_pred HHHhcccccCcccChhhH-H--HHHHHHHhcCChHHHHHH---HHhC-CCCC---CHHHHHHHHHHHHHhCChhHHHHHH
Q 036287 239 IFQSMTRDYGIEPQIEHY-G--CIVDLLSRVGRPEEAYDF---ITNM-KIAP---DHIMLGSLLSACKIHGKLQLGEQIA 308 (488)
Q Consensus 239 ~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~ 308 (488)
+++.........+..... + .++.-+...|....+.++ .... +..| ..........++...|+.+.|...+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 777664221111111111 1 222333334433333222 1111 1101 1122234556667778888888888
Q ss_pred HHHHhcC-C--------CCchhHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 309 KRLLDCR-S--------ADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 309 ~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
+.+.... . ..........-++...|++++|.+.+.......
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8876632 1 122344455667789999999999999887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.95 E-value=3e-08 Score=91.52 Aligned_cols=144 Identities=15% Similarity=0.162 Sum_probs=80.3
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHH----HHHhcCCh
Q 036287 194 MHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVD----LLSRVGRP 269 (488)
Q Consensus 194 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~----~~~~~g~~ 269 (488)
..|++++|++++.+- .+.......+..+...++++.|.+.++.|.+ +..| .+...|.. .+.-.+.+
T Consensus 114 ~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD-~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDED-SILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp CCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCC-HHHHHHHHHHHHHHHTTTCC
T ss_pred HcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCc-HHHHHHHHHHHHHHhCchhH
Confidence 345555555544321 2233333344455555555555555555542 1222 12222222 22223456
Q ss_pred HHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCCh-HHHHHHHHHHH
Q 036287 270 EEAYDFITNM--KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKW-KEAVQIRAKMK 346 (488)
Q Consensus 270 ~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~ 346 (488)
.+|..+|+++ ...+++.+.+.+..+....|++++|+.+++++++.+|.++.+...++-+....|+. +.+.+.+.+++
T Consensus 184 ~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 184 QDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp CHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 7777777777 34456677777777777778888888888887777777777777777777777776 55666777665
Q ss_pred h
Q 036287 347 E 347 (488)
Q Consensus 347 ~ 347 (488)
.
T Consensus 264 ~ 264 (290)
T PF04733_consen 264 Q 264 (290)
T ss_dssp H
T ss_pred H
Confidence 4
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.9e-06 Score=79.04 Aligned_cols=127 Identities=9% Similarity=-0.021 Sum_probs=67.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhCCCCC--ceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHH
Q 036287 18 RSTRLKLVELYGKCGEFKDAMQLFDEMPECN--DVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLV 92 (488)
Q Consensus 18 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~ 92 (488)
..+.....-.+...|+-++|....+.....+ +.+.|..+.-.+....++++|++.|.... ..|...|.-+.-.-+
T Consensus 41 geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~ 120 (700)
T KOG1156|consen 41 GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQI 120 (700)
T ss_pred chhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 3333333334445677777777666554422 46777777777777777777777777643 223444444444444
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHc
Q 036287 93 RNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKH 145 (488)
Q Consensus 93 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 145 (488)
+.|+++.....-.++.+.. +-....|.....+.--.|+...|..+.+...+.
T Consensus 121 QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 121 QMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555544444444431 222334444444444555555555555555443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.4e-08 Score=81.42 Aligned_cols=162 Identities=17% Similarity=0.170 Sum_probs=109.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHHHHHHHH
Q 036287 185 YNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLL 263 (488)
Q Consensus 185 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~ 263 (488)
...+.-+|.+.|+...|..-+++.++.. +.+..++..+...|...|..+.|.+.|+... .+.|+ ..+.|.....+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHHH
Confidence 3345556666666666666666666631 2233455555666666666777766666665 33443 45666666667
Q ss_pred HhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHH
Q 036287 264 SRVGRPEEAYDFITNMKIAPD----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAV 339 (488)
Q Consensus 264 ~~~g~~~~A~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 339 (488)
+..|++++|.+.|++.-..|+ ..+|..+.-...+.|+.+.|...+++.++.+|..+.+...+.....+.|++-.|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 777777777777776622222 5677777777777888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhCCC
Q 036287 340 QIRAKMKEAGV 350 (488)
Q Consensus 340 ~~~~~m~~~g~ 350 (488)
..++.....+.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 88877766544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.7e-06 Score=85.84 Aligned_cols=123 Identities=14% Similarity=0.150 Sum_probs=69.2
Q ss_pred HHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh
Q 036287 222 GVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIH 298 (488)
Q Consensus 222 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 298 (488)
-+...|.+.|+.++|+++++..++. .|+ +..|..-...|-..|++.+|.+.++.. ...+ |-.+-+.....+.+.
T Consensus 199 ~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 199 FLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHC
Confidence 3344455666666666666666632 344 556666666666666666666666655 2222 344444455555666
Q ss_pred CChhHHHHHHHHHHhcC--CCCc-----hhH--HHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 299 GKLQLGEQIAKRLLDCR--SADS-----GTY--VLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 299 g~~~~a~~~~~~~~~~~--p~~~-----~~~--~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
|++++|.+.+......+ |... -.| .-.+.+|.+.|++..|++-|..+.+
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66676666666654433 1110 011 2345677777777777766655543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.6e-08 Score=93.71 Aligned_cols=219 Identities=13% Similarity=0.065 Sum_probs=177.2
Q ss_pred HHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHH
Q 036287 126 CSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAV 202 (488)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 202 (488)
+.+.|++.+|.-.|+..++.. +.+...|.-|....+..++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 357788999999999998886 56788999999999999999999999988775 35677778888899999999999
Q ss_pred HHHHHHHHcCCC--------CCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHH
Q 036287 203 EMFREMINQGIR--------PTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYD 274 (488)
Q Consensus 203 ~l~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 274 (488)
..++..+....+ ++..+-.. ........+....++|-.+....+..+|+.++.+|.-.|--.|.+++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999988764211 01000000 12222334555667777776655666888999999999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 275 FITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 275 ~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
.|+.. .++|+ ..+||.|...++...+.++|+..|.+++++.|.-..+...|+-.|...|.+++|.+.|-....
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99988 77785 789999999999999999999999999999999999999999999999999999999877654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.4e-06 Score=73.56 Aligned_cols=298 Identities=14% Similarity=0.137 Sum_probs=214.4
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHH---HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHH---HHH
Q 036287 17 NRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVM---INCYVEHGLVENAFEVFSRVKVKDTVCWTAM---IDG 90 (488)
Q Consensus 17 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~l---i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~ 90 (488)
++.----|.+.+...|++.+|+.-|....+-+ +..|.++ ...|...|+-..|+.-|++..+..+..+.+- ...
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 34444556777788899999999998888766 6666665 4578888888888888887763333333332 346
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC------------CH--HHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHH
Q 036287 91 LVRNGEMARALDLFREMQRDNVRP------------NE--VTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGA 156 (488)
Q Consensus 91 ~~~~g~~~~A~~~~~~m~~~g~~p------------~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 156 (488)
+.++|++++|..=|+..++..... -. ......+..+...|+...++.....+++.. +.|...+..
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~ 194 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQA 194 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHH
Confidence 789999999999999998864211 11 112334556677889999999999988875 668888888
Q ss_pred HHHHHHhcCCHHHHHHHHHhcc---cCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH----HHHH---H--
Q 036287 157 LINMYSRCGDIDKALQVFEEMK---ERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVT----FVGV---L-- 224 (488)
Q Consensus 157 li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t----~~~l---l-- 224 (488)
-..+|...|++..|+.-++... ..+....--+-..+...|+.+.++...++-++ +.||.-. |..| .
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~ 272 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKS 272 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHH
Confidence 9999999999999987665544 45667777777888899999999999999887 5677632 2111 1
Q ss_pred ----HHHhccCCHHHHHHHHHhcccccCcccC-----hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 036287 225 ----NACSHGGLVDLGFEIFQSMTRDYGIEPQ-----IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLS 293 (488)
Q Consensus 225 ----~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~ 293 (488)
......+.+.++.+-.+...+. .|. ...+..+-.+|...|++.+|++...+. .+.|| +.++.-=..
T Consensus 273 les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAe 349 (504)
T KOG0624|consen 273 LESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 1123445666666666665532 333 234455667778889999999888776 66675 778888888
Q ss_pred HHHHhCChhHHHHHHHHHHhcCCCCchh
Q 036287 294 ACKIHGKLQLGEQIAKRLLDCRSADSGT 321 (488)
Q Consensus 294 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 321 (488)
+|.....++.|+.-|+.+.+.+++|..+
T Consensus 350 A~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 8888889999999999999998887543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.6e-07 Score=75.39 Aligned_cols=189 Identities=14% Similarity=0.090 Sum_probs=119.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccC
Q 036287 156 ALINMYSRCGDIDKALQVFEEMKER---DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRP-TKVTFVGVLNACSHGG 231 (488)
Q Consensus 156 ~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g 231 (488)
.|.-.|...|+...|.+-+++..+. +..+|..+...|.+.|..+.|.+.|++.... .| +....|....-++..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCC
Confidence 3555667777777777777766643 2346666777777777777777777776663 33 3344455555556666
Q ss_pred CHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHH
Q 036287 232 LVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAK 309 (488)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~ 309 (488)
.+++|.+.|+.....-....-..+|..+.-+-.+.|+++.|.+.|++. ...|+ ..+...+.......|++-.|...++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 777777777776654222223456666666666777777777777665 33443 4555666666667777777777777
Q ss_pred HHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHH
Q 036287 310 RLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMK 346 (488)
Q Consensus 310 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 346 (488)
......+.+.......+..-...|+-+.+-+.=..+.
T Consensus 198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 7766666666666666666667777666665544443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.84 E-value=3e-07 Score=84.94 Aligned_cols=226 Identities=15% Similarity=0.124 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCC-CcHhHHHHHHHHH
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRID-LNHIVGGALINMY 161 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y 161 (488)
...-+.++|...|+++.++. +..... .|.......+...+....+-+.+..-+......... .+..+......+|
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 44456667777777665443 332322 555555555544444333444444333333322222 2334444445667
Q ss_pred HhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHH
Q 036287 162 SRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSH----GGLVDLGF 237 (488)
Q Consensus 162 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~ 237 (488)
...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. .+.+.+|.
T Consensus 113 ~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHH
Confidence 7778888888777765 45666666777888888888888888888763 333 344444444332 34578888
Q ss_pred HHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCh-hHHHHHHHHHHhc
Q 036287 238 EIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKL-QLGEQIAKRLLDC 314 (488)
Q Consensus 238 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~ 314 (488)
.+|+++.. ...+++.+.+.+.-+....|++++|.+++++. ...| ++.+...++......|+. +.+.+.+.++...
T Consensus 188 y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 188 YIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 88888775 34567777888888888888888888888775 4344 356666777777777776 6677788888877
Q ss_pred CCCCc
Q 036287 315 RSADS 319 (488)
Q Consensus 315 ~p~~~ 319 (488)
.|..+
T Consensus 266 ~p~h~ 270 (290)
T PF04733_consen 266 NPNHP 270 (290)
T ss_dssp TTTSH
T ss_pred CCCCh
Confidence 77664
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.1e-06 Score=79.86 Aligned_cols=291 Identities=10% Similarity=0.016 Sum_probs=179.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhCCCCC--ce---eeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHH
Q 036287 19 STRLKLVELYGKCGEFKDAMQLFDEMPECN--DV---VASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDG 90 (488)
Q Consensus 19 ~~~~~li~~y~~~g~~~~A~~~~~~m~~~~--~~---~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~ 90 (488)
..+..+...|...|+.+.|.+.+....... +. .........+...|++++|.+.+++.. +.|...++. ...
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHH
Confidence 345566677777888888766666543311 11 223333455678899999999998765 335555553 223
Q ss_pred HHH----cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 036287 91 LVR----NGEMARALDLFREMQRDNVRPN-EVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCG 165 (488)
Q Consensus 91 ~~~----~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 165 (488)
+.. .+....+.+.+.. .....|+ ......+...+...|++++|...++...+.. +.+...+..+...|...|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 333 3445555555544 1222343 3444456677889999999999999999876 556778888999999999
Q ss_pred CHHHHHHHHHhcccC-----CH--HHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHhccCCHH
Q 036287 166 DIDKALQVFEEMKER-----DV--TTYNSLIAGLAMHGRSIEAVEMFREMINQGI-RPTKVTF-V--GVLNACSHGGLVD 234 (488)
Q Consensus 166 ~~~~A~~~~~~~~~~-----~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~-~--~ll~a~~~~g~~~ 234 (488)
++++|...+++..+. +. ..|..+...+...|++++|+.+|++...... .+..... . .++.-+...|..+
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 999999999986641 22 2456788889999999999999999865322 1222221 1 2233333444333
Q ss_pred HHHHH---HHhcccc-cCcccChhhHHHHHHHHHhcCChHHHHHHHHhCC--CCC---C----HHHHHHHHH--HHHHhC
Q 036287 235 LGFEI---FQSMTRD-YGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMK--IAP---D----HIMLGSLLS--ACKIHG 299 (488)
Q Consensus 235 ~a~~~---~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p---~----~~~~~~ll~--~~~~~g 299 (488)
.+.+. ....... .+ ..........+.++...|+.++|..+++.+. ... . ..+-..++. ++...|
T Consensus 243 ~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 243 VGDRWEDLADYAAWHFPD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred hHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 33332 1111110 01 1111222245667778999999999998871 111 1 112222333 446789
Q ss_pred ChhHHHHHHHHHHhc
Q 036287 300 KLQLGEQIAKRLLDC 314 (488)
Q Consensus 300 ~~~~a~~~~~~~~~~ 314 (488)
+.+.|...+...+..
T Consensus 322 ~~~~A~~~L~~al~~ 336 (355)
T cd05804 322 NYATALELLGPVRDD 336 (355)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999888764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.82 E-value=4e-05 Score=74.18 Aligned_cols=121 Identities=17% Similarity=0.165 Sum_probs=84.7
Q ss_pred HHHHHHHhccCCHHHHHHHHH--------hcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC
Q 036287 221 VGVLNACSHGGLVDLGFEIFQ--------SMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM--------KIAPD 284 (488)
Q Consensus 221 ~~ll~a~~~~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~ 284 (488)
...+..-...|+++.|.+++. .+.+ +.-.+.+...++..|.+.++-+.|..++.+. .-.+.
T Consensus 380 L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~ 456 (652)
T KOG2376|consen 380 LLRAQLKISQGNPEVALEILSLFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIA 456 (652)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchH
Confidence 334445667788999988888 4432 2333455667788888888777676666654 11121
Q ss_pred -HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHH
Q 036287 285 -HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKM 345 (488)
Q Consensus 285 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 345 (488)
..+|.-+...-.++|+.++|..+++++.+.+|++..+...++.+|++. +.+.|..+-+.+
T Consensus 457 l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 457 LLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 233444444446779999999999999999999999999999999887 667777765443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.6e-05 Score=77.51 Aligned_cols=335 Identities=15% Similarity=0.197 Sum_probs=189.7
Q ss_pred HHHHhCCC--Cc--hhhHHHHHHHHHhcCChHHHHHHHhhCCCCC-ceeeHHHHHHHHHHc----------------C--
Q 036287 8 QVLKLGLR--SN--RSTRLKLVELYGKCGEFKDAMQLFDEMPECN-DVVASTVMINCYVEH----------------G-- 64 (488)
Q Consensus 8 ~~~~~g~~--~~--~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-~~~~~~~li~~~~~~----------------g-- 64 (488)
.+++.|+. +| .++|++|.+-|.+.|.++.|..+|++....- ++.-++.+-+.|++- |
T Consensus 234 aiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ 313 (835)
T KOG2047|consen 234 AIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNE 313 (835)
T ss_pred HHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccCh
Confidence 34455543 23 4579999999999999999999998765532 233445555555211 1
Q ss_pred ----CHHHHHHHHhhcC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHH
Q 036287 65 ----LVENAFEVFSRVK---------------VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPN------EVTI 119 (488)
Q Consensus 65 ----~~~~A~~~f~~~~---------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~t~ 119 (488)
+++-...-|+.+. ..++..|..-.. ...|+..+-...|.+..+. +.|. ...|
T Consensus 314 ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw 390 (835)
T KOG2047|consen 314 EDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLW 390 (835)
T ss_pred hhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHH
Confidence 2222333344332 113334443332 2356677777777777653 2221 2456
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHcCCCCc---HhHHHHHHHHHHhcCCHHHHHHHHHhccc-----------------
Q 036287 120 VCVLSACSQLGALELGRWIHSYMGKHRIDLN---HIVGGALINMYSRCGDIDKALQVFEEMKE----------------- 179 (488)
Q Consensus 120 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~----------------- 179 (488)
..+.+.|-+.|+++.|+.+|+...+..++.- ..+|..-.++=.+..+++.|+++.+....
T Consensus 391 ~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ 470 (835)
T KOG2047|consen 391 VEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQ 470 (835)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHH
Confidence 6677777777888888888877777654432 45666666777777777777777665431
Q ss_pred ----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC----------------------------------CCCCHH-HH
Q 036287 180 ----RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQG----------------------------------IRPTKV-TF 220 (488)
Q Consensus 180 ----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----------------------------------~~p~~~-t~ 220 (488)
++...|...++.--..|-++....+|+++.+.. ..|+.. .|
T Consensus 471 ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW 550 (835)
T KOG2047|consen 471 ARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIW 550 (835)
T ss_pred HHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHH
Confidence 122345444444444454444444444444322 123321 12
Q ss_pred HHHHHHH---hccCCHHHHHHHHHhcccccCcccChhh--HHHHHHHHHhcCChHHHHHHHHhC--CCCCC--HHHHHHH
Q 036287 221 VGVLNAC---SHGGLVDLGFEIFQSMTRDYGIEPQIEH--YGCIVDLLSRVGRPEEAYDFITNM--KIAPD--HIMLGSL 291 (488)
Q Consensus 221 ~~ll~a~---~~~g~~~~a~~~~~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m--~~~p~--~~~~~~l 291 (488)
+.-|.-+ .....++.|..+|++..+ +.+|...- |-.....=-+-|....|+.++++. ++++. ...|+..
T Consensus 551 ~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~ 628 (835)
T KOG2047|consen 551 NTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIY 628 (835)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2222211 122357888888888875 66654221 111122222457777788888877 34432 4567766
Q ss_pred HHHHHHhCChhHHHHHHHHHHhcCCCCch--hHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 292 LSACKIHGKLQLGEQIAKRLLDCRSADSG--TYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 292 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
|.-....=-+.....+++++++.-|++.. ...-...+-.+.|..+.|..++.--.+
T Consensus 629 I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 629 IKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred HHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 66444444455667788888887665432 222345566788999999999876544
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.2e-05 Score=76.60 Aligned_cols=319 Identities=16% Similarity=0.180 Sum_probs=164.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC----CCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCC
Q 036287 21 RLKLVELYGKCGEFKDAMQLFDEMPE----CNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGE 96 (488)
Q Consensus 21 ~~~li~~y~~~g~~~~A~~~~~~m~~----~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 96 (488)
|-..+....+.|++...+..|++... ......|...+.-....|-.+-+..++++-..-++..-+--|..+...++
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~ 184 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDR 184 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccc
Confidence 34444455566666666666665433 11244566666666666666666666666555555555556666666666
Q ss_pred HHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCchHHH---HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH
Q 036287 97 MARALDLFREMQRDN------VRPNEVTIVCVLSACSQLGALELG---RWIHSYMGKHRIDLNHIVGGALINMYSRCGDI 167 (488)
Q Consensus 97 ~~~A~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a---~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 167 (488)
+++|-+.+...+... .+.+...|..+-...++..+.-.. ..++..++..-.+.-...|++|.+-|.+.|.+
T Consensus 185 ~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ 264 (835)
T KOG2047|consen 185 LDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLF 264 (835)
T ss_pred hHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhh
Confidence 666666665543211 122333333333333332222211 11222221111111134556666666666666
Q ss_pred HHHHHHHHhcccC-------------------------------------------------------------------
Q 036287 168 DKALQVFEEMKER------------------------------------------------------------------- 180 (488)
Q Consensus 168 ~~A~~~~~~~~~~------------------------------------------------------------------- 180 (488)
++|..+|++....
T Consensus 265 ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQ 344 (835)
T KOG2047|consen 265 EKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQ 344 (835)
T ss_pred HHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhc
Confidence 6666665543321
Q ss_pred ---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH------HHHHHHHHHHhccCCHHHHHHHHHhcccccCccc
Q 036287 181 ---DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTK------VTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEP 251 (488)
Q Consensus 181 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 251 (488)
++..|..-+. ...|+..+-...|.+..+. +.|-. ..+..+...|-..|+++.|..+|++..+. ..+.
T Consensus 345 n~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V-~y~~ 420 (835)
T KOG2047|consen 345 NPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV-PYKT 420 (835)
T ss_pred CCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC-Cccc
Confidence 1112222211 1234555566666666553 33322 23566677777888888888888877642 2111
Q ss_pred C---hhhHHHHHHHHHhcCChHHHHHHHHhC---CCCC-----------------CHHHHHHHHHHHHHhCChhHHHHHH
Q 036287 252 Q---IEHYGCIVDLLSRVGRPEEAYDFITNM---KIAP-----------------DHIMLGSLLSACKIHGKLQLGEQIA 308 (488)
Q Consensus 252 ~---~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p-----------------~~~~~~~ll~~~~~~g~~~~a~~~~ 308 (488)
- ..+|-.-.++=.+..+++.|.++++.. |-+| +..+|..++..--..|-++....++
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vY 500 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVY 500 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 1 345555556666777788888877776 2111 1344555555555566667777777
Q ss_pred HHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHH
Q 036287 309 KRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRA 343 (488)
Q Consensus 309 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 343 (488)
++++++.--.|......+..+-...-++++.++++
T Consensus 501 driidLriaTPqii~NyAmfLEeh~yfeesFk~YE 535 (835)
T KOG2047|consen 501 DRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYE 535 (835)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77776653333333333333444444556655554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.3e-08 Score=60.35 Aligned_cols=34 Identities=35% Similarity=0.536 Sum_probs=31.4
Q ss_pred hCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCC
Q 036287 12 LGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMP 45 (488)
Q Consensus 12 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 45 (488)
.|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4889999999999999999999999999999885
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.2e-06 Score=74.25 Aligned_cols=120 Identities=11% Similarity=0.192 Sum_probs=80.1
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCC--ceeeHHHHHHHHHHcCCHHHHHHHHhhcCCC---------------CHHHH--
Q 036287 24 LVELYGKCGEFKDAMQLFDEMPECN--DVVASTVMINCYVEHGLVENAFEVFSRVKVK---------------DTVCW-- 84 (488)
Q Consensus 24 li~~y~~~g~~~~A~~~~~~m~~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---------------~~~~~-- 84 (488)
+...|.+.|++++|..++.-+.+++ +...|-.|.-++.-.|.+.+|..+-.+.+.. |..-|
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence 5567778999999999998876643 4677888888888888888888887766521 11111
Q ss_pred ------------HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCchHHHHHHHHHHHHc
Q 036287 85 ------------TAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSA-CSQLGALELGRWIHSYMGKH 145 (488)
Q Consensus 85 ------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~ 145 (488)
-+|.+...-.-.+++|+++|.+.+..+ |+-...+.-+.. |.++.-++.+.++++-..+.
T Consensus 143 fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 143 FHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 123333333446889999999988753 555555554443 45666677777777665554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.9e-06 Score=74.25 Aligned_cols=301 Identities=18% Similarity=0.178 Sum_probs=173.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCC--ceeeHHHHHHHHHHcCCHHHHHHHHhhcC--CCCHHHHH-HHHHHHHHcC
Q 036287 21 RLKLVELYGKCGEFKDAMQLFDEMPECN--DVVASTVMINCYVEHGLVENAFEVFSRVK--VKDTVCWT-AMIDGLVRNG 95 (488)
Q Consensus 21 ~~~li~~y~~~g~~~~A~~~~~~m~~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~-~li~~~~~~g 95 (488)
+++.+.-+.+..++++|.+++..-.+++ +....+.|..+|....++..|-..++++. .|...-|. --...+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 4555555667777778877776655543 34556667777777777777777777765 23222222 1234556677
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 036287 96 EMARALDLFREMQRDNVRPNEVTIVCVLSAC--SQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQV 173 (488)
Q Consensus 96 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 173 (488)
.+.+|+++...|... |+...-..-+.+. ...+++..++.+.++....| +..+.+...-...+.|+++.|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHH
Confidence 777777777766542 2222211122221 23455556666655554322 233333344445566777777777
Q ss_pred HHhccc----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCc
Q 036287 174 FEEMKE----RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGI 249 (488)
Q Consensus 174 ~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 249 (488)
|+...+ .....||..+. ..+.|++..|+++..++++.|++.... ++ -|..-++.. .+.+ |
T Consensus 167 FqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPE-lg--------IGm~tegiD-vrsv----g- 230 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPE-LG--------IGMTTEGID-VRSV----G- 230 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCc-cC--------ccceeccCc-hhcc----c-
Confidence 766654 23455655443 334566777777777777766543221 00 000000000 0000 0
Q ss_pred ccChhhHHHHH-------HHHHhcCChHHHHHHHHhCCC----CCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC
Q 036287 250 EPQIEHYGCIV-------DLLSRVGRPEEAYDFITNMKI----APDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD 318 (488)
Q Consensus 250 ~p~~~~~~~li-------~~~~~~g~~~~A~~~~~~m~~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 318 (488)
.|-.-+-+.++ ..+.+.|+++.|.+.+..||- ..|++|...+.-. -..+++-.+..-++-+++.+|-.
T Consensus 231 Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP 309 (459)
T KOG4340|consen 231 NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFP 309 (459)
T ss_pred chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCC
Confidence 01112223333 345678999999999999942 3467776655322 23456777778888888888888
Q ss_pred chhHHHHHHHHhcCCChHHHHHHHHH
Q 036287 319 SGTYVLLSNAYASSGKWKEAVQIRAK 344 (488)
Q Consensus 319 ~~~~~~l~~~~~~~g~~~~a~~~~~~ 344 (488)
+.||..++-.|++..-++-|.+++.+
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 88999999999999999998888764
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.1e-06 Score=92.29 Aligned_cols=201 Identities=13% Similarity=0.138 Sum_probs=167.7
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccC--------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 036287 148 DLNHIVGGALINMYSRCGDIDKALQVFEEMKER--------DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVT 219 (488)
Q Consensus 148 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 219 (488)
|.+...|-..+......+++++|++++++.... -...|.++++.-...|.-+...++|+++.+. .-.-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 445667777788888899999999999887641 2357889988888889888899999999874 222345
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 036287 220 FVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP---DHIMLGSLLSAC 295 (488)
Q Consensus 220 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~ 295 (488)
|..|...|...+..++|-++++.|.++++ -...+|...++.+.+..+-+.|..++++. ..-| ........+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 77888999999999999999999998766 66788999999999999999999999886 3233 455566666777
Q ss_pred HHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCCcc
Q 036287 296 KIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQK 352 (488)
Q Consensus 296 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 352 (488)
.+.|+.+++..+|+..+...|.....|..++++-.+.|+.+.++.+|++....++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 889999999999999999999999999999999999999999999999999887753
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.1e-05 Score=69.99 Aligned_cols=290 Identities=13% Similarity=0.109 Sum_probs=211.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhc
Q 036287 54 TVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMI---DGLVRNGEMARALDLFREMQRDNVRPNEVTIV-CVLSACSQL 129 (488)
Q Consensus 54 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~ 129 (488)
--+.+.+...|++.+|+.-|....+-|+..|-++. ..|...|+...|+.=|.+.++ ++||-..-. .-.....+.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhc
Confidence 34667788889999999999998887777776665 578999999999999999888 478754332 234456789
Q ss_pred CchHHHHHHHHHHHHcCCCC--cHhHH------------HHHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHH
Q 036287 130 GALELGRWIHSYMGKHRIDL--NHIVG------------GALINMYSRCGDIDKALQVFEEMKER---DVTTYNSLIAGL 192 (488)
Q Consensus 130 ~~~~~a~~~~~~~~~~g~~~--~~~~~------------~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~ 192 (488)
|.+++|..=|..+++..... ...++ ...+..+.-.|+...|+.....+.+- |+..+..-..+|
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCY 199 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHH
Confidence 99999999999998875311 11111 12234456678999999888887763 677788888899
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChh----hHHHH---H-----
Q 036287 193 AMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIE----HYGCI---V----- 260 (488)
Q Consensus 193 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l---i----- 260 (488)
...|.+..|+.=++..-+.. .-+..++..+-..+...|+.+.++...+... .+.||-. +|-.| +
T Consensus 200 i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~les 275 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLES 275 (504)
T ss_pred HhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHHH
Confidence 99999999998887776642 3345566667777888899999988888776 4566632 22211 1
Q ss_pred -HHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCC
Q 036287 261 -DLLSRVGRPEEAYDFITNM-KIAPD-----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSG 333 (488)
Q Consensus 261 -~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 333 (488)
......+++.++.+-.+.. ...|. ...+..+-..+...+++-+|++...++++.+|+|..++---..+|.-..
T Consensus 276 ~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 276 AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDE 355 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhH
Confidence 1123345666666555544 44554 2233445556677899999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 036287 334 KWKEAVQIRAKMKEAG 349 (488)
Q Consensus 334 ~~~~a~~~~~~m~~~g 349 (488)
.+++|+.=|+...+.+
T Consensus 356 ~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 356 MYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999988876643
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.8e-05 Score=84.15 Aligned_cols=322 Identities=11% Similarity=0.013 Sum_probs=200.1
Q ss_pred HHhcCChHHHHHHHhhCCCC---CceeeHHHHHHHHHHcCCHHHHHHHHhhcC----CC------CH--HHHHHHHHHHH
Q 036287 28 YGKCGEFKDAMQLFDEMPEC---NDVVASTVMINCYVEHGLVENAFEVFSRVK----VK------DT--VCWTAMIDGLV 92 (488)
Q Consensus 28 y~~~g~~~~A~~~~~~m~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~------~~--~~~~~li~~~~ 92 (488)
....|+++.+...++.++.. .++.........+...|++++|...++... .. .. .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 33456666666666665421 123333344455567788888888776542 11 11 12222334566
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCchHHHHHHHHHHHHc----CC-CCcHhHHHHHHHHHHh
Q 036287 93 RNGEMARALDLFREMQRDNVRPNE----VTIVCVLSACSQLGALELGRWIHSYMGKH----RI-DLNHIVGGALINMYSR 163 (488)
Q Consensus 93 ~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~~~li~~y~~ 163 (488)
..|++++|...+++....-...+. ...+.+...+...|+++.|...+...... |- .........+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999999887763111222 23344555667789999998888877643 21 1112344566777888
Q ss_pred cCCHHHHHHHHHhccc-------C----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCC--HHHHHHHHHHHh
Q 036287 164 CGDIDKALQVFEEMKE-------R----DVTTYNSLIAGLAMHGRSIEAVEMFREMINQG--IRPT--KVTFVGVLNACS 228 (488)
Q Consensus 164 ~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~--~~t~~~ll~a~~ 228 (488)
.|+++.|...+++..+ + ....+..+...+...|++++|...+++..... ..+. ...+..+.....
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 9999999888876543 1 12234455556777899999999988876521 1122 223334455677
Q ss_pred ccCCHHHHHHHHHhcccccCcccChhhH-----HHHHHHHHhcCChHHHHHHHHhCCCC--CCH----HHHHHHHHHHHH
Q 036287 229 HGGLVDLGFEIFQSMTRDYGIEPQIEHY-----GCIVDLLSRVGRPEEAYDFITNMKIA--PDH----IMLGSLLSACKI 297 (488)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~--p~~----~~~~~ll~~~~~ 297 (488)
..|+.++|...+.....-.........+ ...+..+...|+.+.|.+++...... ... ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8899999988887774311111111111 11224455688999999988776211 111 123456677888
Q ss_pred hCChhHHHHHHHHHHhcC------CCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 298 HGKLQLGEQIAKRLLDCR------SADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 298 ~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
.|+.++|...++++.+.. +....++..+..+|...|+.++|...+.+..+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 899999999999987742 1123467778889999999999999999987654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.2e-05 Score=74.17 Aligned_cols=326 Identities=13% Similarity=0.132 Sum_probs=212.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCCCC--ceeeHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHc
Q 036287 20 TRLKLVELYGKCGEFKDAMQLFDEMPECN--DVVASTVMINCYVEHGLVENAFEVFSRVKV---KDTVCWTAMIDGLVRN 94 (488)
Q Consensus 20 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 94 (488)
.+..++..|- .+++...+++.+.+..+. ...+.....-.+...|+-++|......-.. ++.+.|..+.-.+...
T Consensus 10 lF~~~lk~yE-~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 10 LFRRALKCYE-TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHH-HHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 4555666663 456666666555554422 233444444455778999999998877653 4568899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHH
Q 036287 95 GEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVF 174 (488)
Q Consensus 95 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 174 (488)
.++++|++.|......+ +-|...+.-+.-.-++.++++........+.+.. +.....|..++-++.-.|+...|..+.
T Consensus 89 K~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999865 4456667666666678888888877777776653 334556777777777788888887776
Q ss_pred Hhccc-----CCHH----------------------------------------HHHHHHHHHHhcCChhHHHHHHHHHH
Q 036287 175 EEMKE-----RDVT----------------------------------------TYNSLIAGLAMHGRSIEAVEMFREMI 209 (488)
Q Consensus 175 ~~~~~-----~~~~----------------------------------------~~~~li~~~~~~g~~~~A~~l~~~m~ 209 (488)
++..+ ++.. .-.+....+.+.++.++|..++..++
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll 246 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLL 246 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence 65432 1111 11223445777889999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHh--ccCCHHHHHHHHHhcccccCc--cc-----C-----------------------hhhHH
Q 036287 210 NQGIRPTKVTFVGVLNACS--HGGLVDLGFEIFQSMTRDYGI--EP-----Q-----------------------IEHYG 257 (488)
Q Consensus 210 ~~g~~p~~~t~~~ll~a~~--~~g~~~~a~~~~~~~~~~~~~--~p-----~-----------------------~~~~~ 257 (488)
.. .||...|...+..+. -.+..+....+|....+.+.. .| + +.++.
T Consensus 247 ~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~ 324 (700)
T KOG1156|consen 247 ER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFK 324 (700)
T ss_pred hh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhh
Confidence 84 688877776665544 233333333666665543211 11 0 11112
Q ss_pred HHHHHHHhcCChHH----HHHHHHhC-C------------CCCCHHHHHH--HHHHHHHhCChhHHHHHHHHHHhcCCCC
Q 036287 258 CIVDLLSRVGRPEE----AYDFITNM-K------------IAPDHIMLGS--LLSACKIHGKLQLGEQIAKRLLDCRSAD 318 (488)
Q Consensus 258 ~li~~~~~~g~~~~----A~~~~~~m-~------------~~p~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 318 (488)
.+...|-.-...+- +..+...+ + .+|....|.. +...+-..|+++.|...++.+++.-|.-
T Consensus 325 dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTl 404 (700)
T KOG1156|consen 325 DLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTL 404 (700)
T ss_pred hhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchH
Confidence 22222211111110 11111111 1 2566666654 5667788899999999999999988888
Q ss_pred chhHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 036287 319 SGTYVLLSNAYASSGKWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 319 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 350 (488)
+..|..-+.++...|+.++|...+++..+.+.
T Consensus 405 iEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 405 IELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 88888889999999999999999998877654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.1e-06 Score=77.71 Aligned_cols=182 Identities=13% Similarity=0.007 Sum_probs=118.2
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhccc--CC-H---HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHH
Q 036287 149 LNHIVGGALINMYSRCGDIDKALQVFEEMKE--RD-V---TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTK--VTF 220 (488)
Q Consensus 149 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~ 220 (488)
.....+..+...|.+.|+++.|...|+++.. |+ . .+|..+..+|.+.|++++|+..|+++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3455666777778888888888888887654 22 1 35677777888888888888888888764221111 133
Q ss_pred HHHHHHHhcc--------CCHHHHHHHHHhcccccCcccChh-hHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 036287 221 VGVLNACSHG--------GLVDLGFEIFQSMTRDYGIEPQIE-HYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSL 291 (488)
Q Consensus 221 ~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 291 (488)
..+..++... |+.++|.+.|+.+.+. .|+.. .+..+... .. ..... ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~-~~---~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM-DY---LRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH-HH---HHHHH-----------HHHHHHH
Confidence 3344444433 5677777777777643 33321 22111111 00 00000 0111245
Q ss_pred HHHHHHhCChhHHHHHHHHHHhcCCCC---chhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 292 LSACKIHGKLQLGEQIAKRLLDCRSAD---SGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 292 l~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
...+...|+++.|...++++++..|.+ +..+..++.+|...|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 567888999999999999999986654 468899999999999999999999888654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.1e-05 Score=72.96 Aligned_cols=307 Identities=14% Similarity=0.184 Sum_probs=148.5
Q ss_pred HHHHHhcCChHHHHHHHhhCCCC--CceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHH----HHHHHHcCCHH
Q 036287 25 VELYGKCGEFKDAMQLFDEMPEC--NDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAM----IDGLVRNGEMA 98 (488)
Q Consensus 25 i~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l----i~~~~~~g~~~ 98 (488)
++.+.+.|++++|.+.-+++... ++..+...-+-+..+.+++++|+.+.+.-... .+++.. .-+..+.+..+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHH
Confidence 44555556666666655555442 33444444445555555555555444332211 111111 11223445555
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCC----------------------------C
Q 036287 99 RALDLFREMQRDNVRP-NEVTIVCVLSACSQLGALELGRWIHSYMGKHRID----------------------------L 149 (488)
Q Consensus 99 ~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----------------------------~ 149 (488)
+|+..++ |..+ |..+...-...|.+++++++|..+|+.+.+++.+ |
T Consensus 97 ealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~ 171 (652)
T KOG2376|consen 97 EALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP 171 (652)
T ss_pred HHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC
Confidence 5555544 1111 1223333344445555555555555555443321 1
Q ss_pred --cHhHHHHHHHHHHhcCCHHHHHHHHHhcc--------cCC-----HH-----HHHHHHHHHHhcCChhHHHHHHHHHH
Q 036287 150 --NHIVGGALINMYSRCGDIDKALQVFEEMK--------ERD-----VT-----TYNSLIAGLAMHGRSIEAVEMFREMI 209 (488)
Q Consensus 150 --~~~~~~~li~~y~~~g~~~~A~~~~~~~~--------~~~-----~~-----~~~~li~~~~~~g~~~~A~~l~~~m~ 209 (488)
+-..+......+...|++.+|+++++... +.| +. .--.|.-.+-..|+.++|..++...+
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 11122223445667788888888887762 111 11 12223344566788888888888877
Q ss_pred HcCCCCCHHHH----HHHHHHHhccCC-HH-HHHHHHHhccccc----------CcccChhhHHHHHHHHHhcCChHHHH
Q 036287 210 NQGIRPTKVTF----VGVLNACSHGGL-VD-LGFEIFQSMTRDY----------GIEPQIEHYGCIVDLLSRVGRPEEAY 273 (488)
Q Consensus 210 ~~g~~p~~~t~----~~ll~a~~~~g~-~~-~a~~~~~~~~~~~----------~~~p~~~~~~~li~~~~~~g~~~~A~ 273 (488)
..+ .+|.... |.|+ +...-.. ++ .++..++...... .-.-...--++++.+|. +.-+.+.
T Consensus 252 ~~~-~~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r 327 (652)
T KOG2376|consen 252 KRN-PADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVR 327 (652)
T ss_pred Hhc-CCCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHH
Confidence 763 4444221 2222 2221111 11 1111111111000 00001111123444443 4455666
Q ss_pred HHHHhCC-CCCCHHHHHHHHHHHH-Hh-CChhHHHHHHHHHHhcCCCC-chhHHHHHHHHhcCCChHHHHHHHH
Q 036287 274 DFITNMK-IAPDHIMLGSLLSACK-IH-GKLQLGEQIAKRLLDCRSAD-SGTYVLLSNAYASSGKWKEAVQIRA 343 (488)
Q Consensus 274 ~~~~~m~-~~p~~~~~~~ll~~~~-~~-g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 343 (488)
++-...+ ..|. ..+..++..+. .. .....+..++....+..|.+ ..+....+......|+|+.|.+++.
T Consensus 328 ~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 328 ELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred HHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 6666663 3343 44445554442 22 24677778888887777877 3455566778899999999999999
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.5e-05 Score=78.64 Aligned_cols=287 Identities=17% Similarity=0.215 Sum_probs=148.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC-CCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCC-------------------
Q 036287 21 RLKLVELYGKCGEFKDAMQLFDEMPE-CNDVVASTVMINCYVEHGLVENAFEVFSRVKVKD------------------- 80 (488)
Q Consensus 21 ~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~------------------- 80 (488)
.-+.|+.|.+.|.+..|.++-..=.+ ..+......+..++.+..-+++|-.+|+++..++
T Consensus 618 ~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaiela 697 (1636)
T KOG3616|consen 618 GLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELA 697 (1636)
T ss_pred cHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHH
Confidence 45678999999999888776422111 1113333334444444444444444444443221
Q ss_pred -------HHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHh
Q 036287 81 -------TVC-WTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHI 152 (488)
Q Consensus 81 -------~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 152 (488)
++. =......+.+.|+++.|+.-|-+... ..-.+.+......+.+|..+++.+..... -..
T Consensus 698 rfafp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~--~s~ 766 (1636)
T KOG3616|consen 698 RFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASG 766 (1636)
T ss_pred HhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccc
Confidence 110 01111222333444444444322211 11223344445566666666666655432 123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 036287 153 VGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGL 232 (488)
Q Consensus 153 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 232 (488)
.|..+.+-|+..|+++.|.++|-+.. .++-.|..|.+.|++++|.++-.+... .......|.+-..-.-..|.
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgk 839 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGK 839 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcc
Confidence 34556667777777777777776532 344556677777777777766555432 22333344444444556677
Q ss_pred HHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 036287 233 VDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLL 312 (488)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 312 (488)
+.+|.+++-.+. .|+. -|.+|-+.|..+..+++..+-.-.--..|-..+..-+-..|++..|+..|-++
T Consensus 840 f~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea- 908 (1636)
T KOG3616|consen 840 FAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA- 908 (1636)
T ss_pred hhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh-
Confidence 777776665543 2332 35667777777777776666521112344445555566666666666655443
Q ss_pred hcCCCCchhHHHHHHHHhcCCChHHHHHHHH
Q 036287 313 DCRSADSGTYVLLSNAYASSGKWKEAVQIRA 343 (488)
Q Consensus 313 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 343 (488)
.-|..-+++|-.++.|++|.++-+
T Consensus 909 -------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 909 -------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred -------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 234455566666666666655443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.2e-05 Score=75.82 Aligned_cols=319 Identities=16% Similarity=0.185 Sum_probs=210.7
Q ss_pred hHHHHHHHHhCCC--CchhhHHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHH-----HHH------------------
Q 036287 3 REIHGQVLKLGLR--SNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVAST-----VMI------------------ 57 (488)
Q Consensus 3 ~~i~~~~~~~g~~--~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~-----~li------------------ 57 (488)
|++.+++++.+++ .|+.--+.-+.++...+-..+-.++++++.-.+++++-+ .||
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rL 1046 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRL 1046 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHh
Confidence 6888899998874 467777788899999999999999998875543222222 111
Q ss_pred ---------HHHHHcCCHHHHHHHHhhcC-------------------------CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 036287 58 ---------NCYVEHGLVENAFEVFSRVK-------------------------VKDTVCWTAMIDGLVRNGEMARALDL 103 (488)
Q Consensus 58 ---------~~~~~~g~~~~A~~~f~~~~-------------------------~~~~~~~~~li~~~~~~g~~~~A~~~ 103 (488)
......+-+++|..+|+... -.....|..+..+-.+.|...+|++-
T Consensus 1047 dnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1047 DNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred ccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHH
Confidence 11145566777777777642 11345799999999999999999988
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc----
Q 036287 104 FREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---- 179 (488)
Q Consensus 104 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---- 179 (488)
|-+. -|+..|..++.++.+.|.+++-..++..+.+..-+|.+. +.|+-+|++.+++.+-++.+..-..
T Consensus 1127 yika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~ 1198 (1666)
T KOG0985|consen 1127 YIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQ 1198 (1666)
T ss_pred HHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHH
Confidence 7542 367889999999999999999999999888877666544 5789999999998887665432110
Q ss_pred -------------------CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 036287 180 -------------------RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIF 240 (488)
Q Consensus 180 -------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 240 (488)
.++.-|..+...+...|+++.|.+.-++. .+..||..+-.+|...+.+..|.-
T Consensus 1199 ~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQi-- 1270 (1666)
T KOG0985|consen 1199 QVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQI-- 1270 (1666)
T ss_pred HHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHHh--
Confidence 13445666666666677777666655543 234577777777777666554432
Q ss_pred HhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC
Q 036287 241 QSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIA-PDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD 318 (488)
Q Consensus 241 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 318 (488)
. -..+.....-..-|+..|-..|.+++-+.+++.. |.+ ..-..|+.|.-.|.+-+ +++..+.++-.-..
T Consensus 1271 ---C-GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsR---- 1341 (1666)
T KOG0985|consen 1271 ---C-GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSR---- 1341 (1666)
T ss_pred ---c-CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHh----
Confidence 1 0122333445567788888888888888888765 443 23455666655555443 44444333333221
Q ss_pred chhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 319 SGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 319 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
...--+++++-.+.-|.+..-++..-.+
T Consensus 1342 -vNipKviRA~eqahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1342 -VNIPKVIRAAEQAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred -cchHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 1122466777777778888777765544
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.7e-06 Score=85.72 Aligned_cols=229 Identities=13% Similarity=0.082 Sum_probs=176.7
Q ss_pred HHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCC-------ceeeHHHHHHHHHHcCCHHHHHHHHhhcCC
Q 036287 6 HGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECN-------DVVASTVMINCYVEHGLVENAFEVFSRVKV 78 (488)
Q Consensus 6 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-------~~~~~~~li~~~~~~g~~~~A~~~f~~~~~ 78 (488)
|+.+++.. +-+...|-..|......++++.|++++++....= -...|.++++.-..-|.-+...++|++..+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 44444433 3345668888888889999999999998875521 356899999998889988999999998764
Q ss_pred C-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCC-CcHhHHH
Q 036287 79 K-D-TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRID-LNHIVGG 155 (488)
Q Consensus 79 ~-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~ 155 (488)
- | ...|..|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++.++++.=.. ..+....
T Consensus 1526 ycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Is 1604 (1710)
T KOG1070|consen 1526 YCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFIS 1604 (1710)
T ss_pred hcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHH
Confidence 3 3 346888999999999999999999999875 3456778888888888989999999999988775311 2455566
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcc
Q 036287 156 ALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTK--VTFVGVLNACSHG 230 (488)
Q Consensus 156 ~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~ 230 (488)
-.+.+-.++|+.+.++.+|+.... +-...|+..|..=.++|+.+.+..+|++....++.|-. ..|...|..=...
T Consensus 1605 kfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~ 1684 (1710)
T KOG1070|consen 1605 KFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSH 1684 (1710)
T ss_pred HHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhc
Confidence 677778899999999999998775 34678999999999999999999999999998877654 4455555544444
Q ss_pred CCHHHH
Q 036287 231 GLVDLG 236 (488)
Q Consensus 231 g~~~~a 236 (488)
|+-+.+
T Consensus 1685 Gde~~v 1690 (1710)
T KOG1070|consen 1685 GDEKNV 1690 (1710)
T ss_pred CchhhH
Confidence 554333
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.9e-08 Score=56.75 Aligned_cols=33 Identities=30% Similarity=0.611 Sum_probs=25.8
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 036287 146 RIDLNHIVGGALINMYSRCGDIDKALQVFEEMK 178 (488)
Q Consensus 146 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 178 (488)
|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677788888888888888888888888887774
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00029 Score=77.25 Aligned_cols=326 Identities=10% Similarity=-0.020 Sum_probs=201.1
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCCc-eeeHHHHHHHHHHcCCHHHHHHHHhhcCC----CCHHHHHHHHHHHHHcCCH
Q 036287 23 KLVELYGKCGEFKDAMQLFDEMPECND-VVASTVMINCYVEHGLVENAFEVFSRVKV----KDTVCWTAMIDGLVRNGEM 97 (488)
Q Consensus 23 ~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~ 97 (488)
.....|...|++.+|..........+. ..............|+++.+..+++.++. .+..........+...|++
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~ 425 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRY 425 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCH
Confidence 334445556666666665555544320 00111122334567888888888888751 1222334445566788999
Q ss_pred HHHHHHHHHHHHCC--C----CCCH--HHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCc----HhHHHHHHHHHHhcC
Q 036287 98 ARALDLFREMQRDN--V----RPNE--VTIVCVLSACSQLGALELGRWIHSYMGKHRIDLN----HIVGGALINMYSRCG 165 (488)
Q Consensus 98 ~~A~~~~~~m~~~g--~----~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g 165 (488)
++|..++.+....- . .|.. .....+...+...|+++.+...++...+.-...+ ....+.+...+...|
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 99999998875431 0 1111 1122233445678999999999998876321222 134456677788899
Q ss_pred CHHHHHHHHHhccc-------CC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHhc
Q 036287 166 DIDKALQVFEEMKE-------RD--VTTYNSLIAGLAMHGRSIEAVEMFREMINQ----GIR--P-TKVTFVGVLNACSH 229 (488)
Q Consensus 166 ~~~~A~~~~~~~~~-------~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~--p-~~~t~~~ll~a~~~ 229 (488)
+++.|...+.+... +. ..++..+...+...|++++|...+++.... +.. | ....+..+...+..
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 585 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE 585 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 99999999888753 11 234555667788999999999999887652 211 1 12233444555667
Q ss_pred cCCHHHHHHHHHhccccc-Cccc--ChhhHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHH-----HHHHHHHH
Q 036287 230 GGLVDLGFEIFQSMTRDY-GIEP--QIEHYGCIVDLLSRVGRPEEAYDFITNM----KIAPDHIMLG-----SLLSACKI 297 (488)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~-~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~-----~ll~~~~~ 297 (488)
.|++++|...+....... ...+ ....+..+...+...|++++|.+.+... ........+. ..+..+..
T Consensus 586 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (903)
T PRK04841 586 WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQM 665 (903)
T ss_pred hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHH
Confidence 799999999988775321 1112 1334455667788899999998888776 1111111111 12234456
Q ss_pred hCChhHHHHHHHHHHhcCCCCchh----HHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 298 HGKLQLGEQIAKRLLDCRSADSGT----YVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 298 ~g~~~~a~~~~~~~~~~~p~~~~~----~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
.|+.+.|...+.......+..... +..+..++...|++++|...+++....
T Consensus 666 ~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 666 TGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred CCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 789999998887765532222211 456788899999999999999987653
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.7e-05 Score=70.34 Aligned_cols=158 Identities=11% Similarity=0.031 Sum_probs=108.8
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhhCCCCC-ceeeHH-HHHHHHHHcCCHHHHHHHHhhcCCC-CHHHHHHHHH--HH
Q 036287 17 NRSTRLKLVELYGKCGEFKDAMQLFDEMPECN-DVVAST-VMINCYVEHGLVENAFEVFSRVKVK-DTVCWTAMID--GL 91 (488)
Q Consensus 17 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-~~~~~~-~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~li~--~~ 91 (488)
+....+.|...|-...++..|-..++++...- ...-|. .-...+.+.+.+.+|+++...|... +...-..-+. ..
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIk 122 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIK 122 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 55667788889999999999999999876622 112221 1235567889999999999998864 3222222222 23
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHc-CCCCcHhHHHHHHHHHHhcCCHHHH
Q 036287 92 VRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKH-RIDLNHIVGGALINMYSRCGDIDKA 170 (488)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A 170 (488)
.+.+++..+..+.++....| +..+.....-...+.|+.+.|.+-|+...+. |+.| ...||.. -+..+.|+.+.|
T Consensus 123 Yse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniA-LaHy~~~qyasA 197 (459)
T KOG4340|consen 123 YSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLA-LAHYSSRQYASA 197 (459)
T ss_pred cccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHH-HHHHhhhhHHHH
Confidence 45688888888888765433 4445555544557889999999999998875 4554 4455543 445567999999
Q ss_pred HHHHHhccc
Q 036287 171 LQVFEEMKE 179 (488)
Q Consensus 171 ~~~~~~~~~ 179 (488)
++...++.+
T Consensus 198 Lk~iSEIie 206 (459)
T KOG4340|consen 198 LKHISEIIE 206 (459)
T ss_pred HHHHHHHHH
Confidence 999888775
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.8e-05 Score=72.34 Aligned_cols=322 Identities=16% Similarity=0.122 Sum_probs=184.9
Q ss_pred HHHHhcCChHHHHHHHhhCC--CCCceeeHHHHHHHHHHcCCHHHHHHHHhhcC--CCC-HHHHHHHHHHHHHcCCHHHH
Q 036287 26 ELYGKCGEFKDAMQLFDEMP--ECNDVVASTVMINCYVEHGLVENAFEVFSRVK--VKD-TVCWTAMIDGLVRNGEMARA 100 (488)
Q Consensus 26 ~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~-~~~~~~li~~~~~~g~~~~A 100 (488)
++.+..|+++.|...|.... .+++.+.|+.-..+|.+.|++++|++--.+-. .|+ ...|+-...++.-.|++++|
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 34456788888888887643 34467778888888888888888776555443 232 34677777788888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhc---C---------------------------------------------ch
Q 036287 101 LDLFREMQRDNVRPNEVTIVCVLSACSQL---G---------------------------------------------AL 132 (488)
Q Consensus 101 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---~---------------------------------------------~~ 132 (488)
+.-|.+-++.. +.|...+..+..++... + +.
T Consensus 90 ~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 90 ILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 88887766643 33444455555444111 0 00
Q ss_pred HHHHHHHHHHHHc--------C-------CCC------------cH----------hHHHHHHHHHHhcCCHHHHHHHHH
Q 036287 133 ELGRWIHSYMGKH--------R-------IDL------------NH----------IVGGALINMYSRCGDIDKALQVFE 175 (488)
Q Consensus 133 ~~a~~~~~~~~~~--------g-------~~~------------~~----------~~~~~li~~y~~~g~~~~A~~~~~ 175 (488)
....+.+..+... | ..| |. .-...|.++.-+..+++.|.+.+.
T Consensus 169 ~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~ 248 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYA 248 (539)
T ss_pred HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 0011111111000 0 000 00 001223333444444455554444
Q ss_pred hccc--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--C----HHHHHHHHHHHhccCCHHHHHHHHHhccccc
Q 036287 176 EMKE--RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRP--T----KVTFVGVLNACSHGGLVDLGFEIFQSMTRDY 247 (488)
Q Consensus 176 ~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 247 (488)
...+ .++.-++....+|...|.+.+....-....+.|-.- + ...+..+..++...++.+.+..+|.+....+
T Consensus 249 ~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~ 328 (539)
T KOG0548|consen 249 KALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEH 328 (539)
T ss_pred HHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhh
Confidence 4332 222334444555666666655555555444433110 0 0112223335555666777777776655432
Q ss_pred CcccChhh-------------------------HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCC
Q 036287 248 GIEPQIEH-------------------------YGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGK 300 (488)
Q Consensus 248 ~~~p~~~~-------------------------~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 300 (488)
..|+... ...-...+.+.|++.+|+..+.++ ...| |...|..-.-+|.+.|+
T Consensus 329 -Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~ 407 (539)
T KOG0548|consen 329 -RTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGE 407 (539)
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhh
Confidence 2222111 011133456678888888888887 4445 57778888888888888
Q ss_pred hhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 301 LQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 301 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
+..|.+-.+..++++|+....|..-+.++....+|++|.+.|.+-.+.+
T Consensus 408 ~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 408 YPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888888888888776543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.7e-06 Score=83.02 Aligned_cols=216 Identities=13% Similarity=0.048 Sum_probs=111.5
Q ss_pred CCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcC--CCCHHHHHHHHHHH
Q 036287 14 LRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVK--VKDTVCWTAMIDGL 91 (488)
Q Consensus 14 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~ 91 (488)
++|-...-..+...+..+|-...|..+|++ ...|.-.|.+|...|+..+|..+..+.. +||...|..+.+..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Er------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFER------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVL 467 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHh------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhc
Confidence 344444455556666666666666666654 3445556666666666666665554433 34455555555555
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 036287 92 VRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKAL 171 (488)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 171 (488)
...--+++|.++++..-.. .-..+.....+.++++++.+.++...+.. +....+|..+..++.++++++.|.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 5555555666555443221 01111111122455555555555555443 333445555555566666666666
Q ss_pred HHHHhccc--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcc
Q 036287 172 QVFEEMKE--R-DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMT 244 (488)
Q Consensus 172 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 244 (488)
+.|..... | +..+||.+-.+|.+.|+-.+|...+.+..+.+.. +-..+-..+....+.|.+++|.+.+.++.
T Consensus 540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 66655442 2 3355666666666666666666666666555422 22222223333445556666665555554
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.8e-06 Score=71.34 Aligned_cols=118 Identities=9% Similarity=0.126 Sum_probs=89.0
Q ss_pred cCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HHhCC--hhHH
Q 036287 230 GGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSAC-KIHGK--LQLG 304 (488)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~-~~~g~--~~~a 304 (488)
.++.+++...+....+ .-+.+...|..|...|...|++++|...+++. ...| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4555666666666553 23445777888888888888888888888877 5555 466777777654 56666 4888
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 305 EQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 305 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
..+++++++.+|.++.++..++..+...|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 888888888888888888888888888888888888888887643
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.9e-06 Score=81.20 Aligned_cols=190 Identities=16% Similarity=0.130 Sum_probs=160.4
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036287 146 RIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLN 225 (488)
Q Consensus 146 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 225 (488)
+++|-......+...+.++|-...|..+|+++ ..|.-.|.+|...|+..+|..+..+-.+ -+||..-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 35666777788999999999999999999975 4788899999999999999999998887 5899999999999
Q ss_pred HHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhH
Q 036287 226 ACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQL 303 (488)
Q Consensus 226 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 303 (488)
..-...-+++|.++++..... .-..+.....+.++++++.+.++.- .+.| ...+|-.+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 988888899999998876642 1111222233478999999988865 5555 47889999888899999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 036287 304 GEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 304 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 350 (488)
|.+.|.....++|++...|+.+..+|.+.|+-.+|...+++..+.+.
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999988774
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.9e-05 Score=79.46 Aligned_cols=234 Identities=10% Similarity=0.087 Sum_probs=139.8
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHc
Q 036287 17 NRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRN 94 (488)
Q Consensus 17 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 94 (488)
+...+..|+..|-..+++++|.++.+...+ ++....|-.+...+.+.++.++|..+ .++......
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~ 96 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQN 96 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccc
Confidence 344566777777777777777777765444 23344455554555666654444443 334444444
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHH
Q 036287 95 GEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVF 174 (488)
Q Consensus 95 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 174 (488)
.++.-...++..|... .-+...+..+..+|-++|+.+++.++++++++.. +.|+.+.|.+...|+.. ++++|.+++
T Consensus 97 ~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 97 LKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred cchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 4554444444455442 2345577777888888888888888888888877 66777888888888888 888888877
Q ss_pred HhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhccCCHHHHHHHHHhcccccCcccCh
Q 036287 175 EEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTF-VGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQI 253 (488)
Q Consensus 175 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 253 (488)
.+.. ..|...+++.++.++|.++... .|+...+ ..++.. +....+..--+
T Consensus 173 ~KAV-----------~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~k----------------i~~~~~~~~~~ 223 (906)
T PRK14720 173 KKAI-----------YRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIERK----------------VLGHREFTRLV 223 (906)
T ss_pred HHHH-----------HHHHhhhcchHHHHHHHHHHhc--CcccchHHHHHHHH----------------HHhhhccchhH
Confidence 6643 2366677888888888888774 3443332 222222 21111212223
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 036287 254 EHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACK 296 (488)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 296 (488)
.++--+...|....+++++.++++.+ ...| |.....-++..|.
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 34445556666667777777777766 4333 3444455555554
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1e-05 Score=78.08 Aligned_cols=244 Identities=13% Similarity=0.066 Sum_probs=164.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHH
Q 036287 91 LVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKA 170 (488)
Q Consensus 91 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 170 (488)
+.++|+..+|.-.|+...+.+ |-+...|.-|...-+..++-..|+..+.+..+.. +.+..+.-+|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 456777777777777776664 3355666666666666667777777777777665 44566666677777777777777
Q ss_pred HHHHHhccc-CCHHHHHHHH---------HHHHhcCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 036287 171 LQVFEEMKE-RDVTTYNSLI---------AGLAMHGRSIEAVEMFREMIN-QGIRPTKVTFVGVLNACSHGGLVDLGFEI 239 (488)
Q Consensus 171 ~~~~~~~~~-~~~~~~~~li---------~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 239 (488)
.+.|+.=.. .-...|...- ..+..........++|-++.. .+..+|......|.-.|--.|.+++|...
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 777665321 0000000000 111112223455666666654 34346666777777778888999999999
Q ss_pred HHhcccccCcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCC
Q 036287 240 FQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRS 316 (488)
Q Consensus 240 ~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 316 (488)
|+.+. .+.|+ ...||-|...++...+-++|+..|++. .++|+ +.++..|.-+|...|.+++|.+.|-.++.+.+
T Consensus 453 f~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 453 FEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 99998 44665 788999999999999999999999988 88888 67888899999999999999999988887543
Q ss_pred C-----C-----chhHHHHHHHHhcCCChHHHH
Q 036287 317 A-----D-----SGTYVLLSNAYASSGKWKEAV 339 (488)
Q Consensus 317 ~-----~-----~~~~~~l~~~~~~~g~~~~a~ 339 (488)
. . ...|..|=.++.-.++.|-+.
T Consensus 530 ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 530 KSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred cccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 2 1 134555555555555555333
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.7e-05 Score=70.01 Aligned_cols=231 Identities=12% Similarity=0.051 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC-chHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRDNVRPN-EVTIVCVLSACSQLG-ALELGRWIHSYMGKHRIDLNHIVGGALINM 160 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 160 (488)
++..+-..+...+..++|+.++.++++. .|+ ..+|...-.++...+ +++++...+..+.+.. +.+..+|+...-+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 5666667777788889999999888875 344 345555555555666 5678888888777765 3455566655555
Q ss_pred HHhcCCH--HHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 036287 161 YSRCGDI--DKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDL 235 (488)
Q Consensus 161 y~~~g~~--~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 235 (488)
+.+.|+. +++..+++++.+ +|..+|+.....+...|+++++++.++++++.+.. |...|+.....+.+.+..
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l-- 192 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLL-- 192 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccc--
Confidence 5555542 556666666554 45667777777777777777888888777775433 233333332222221100
Q ss_pred HHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh----CChhHHHHHHH
Q 036287 236 GFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIH----GKLQLGEQIAK 309 (488)
Q Consensus 236 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~~~ 309 (488)
. +. ....+++.+...++ ...| |...|+.+...+... ++..+|...+.
T Consensus 193 --------~---~~----------------~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~ 245 (320)
T PLN02789 193 --------G---GL----------------EAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCL 245 (320)
T ss_pred --------c---cc----------------cccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHH
Confidence 0 00 00123344444332 3344 466677776666653 33456777777
Q ss_pred HHHhcCCCCchhHHHHHHHHhcCC------------------ChHHHHHHHHHHH
Q 036287 310 RLLDCRSADSGTYVLLSNAYASSG------------------KWKEAVQIRAKMK 346 (488)
Q Consensus 310 ~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~ 346 (488)
++.+.+|.++.+...|+..|.... ..++|.++++.+.
T Consensus 246 ~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 246 EVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 877777888888888888887642 2366888888773
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.9e-05 Score=71.48 Aligned_cols=182 Identities=13% Similarity=0.023 Sum_probs=129.0
Q ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCC-C-cHhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CH---HHH
Q 036287 114 PNEVTIVCVLSACSQLGALELGRWIHSYMGKHRID-L-NHIVGGALINMYSRCGDIDKALQVFEEMKE--R-DV---TTY 185 (488)
Q Consensus 114 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~---~~~ 185 (488)
.....+......+...|+++.|...++.+.+.... | ....+..+..+|.+.|++++|...|+++.+ | +. .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 45677888888999999999999999999876422 1 124667789999999999999999999875 2 12 245
Q ss_pred HHHHHHHHhc--------CChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhH
Q 036287 186 NSLIAGLAMH--------GRSIEAVEMFREMINQGIRPTKV-TFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHY 256 (488)
Q Consensus 186 ~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 256 (488)
..+..++.+. |++++|.+.|+++... .|+.. ....+... .. ... .. ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~~------~~---------~~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LRN------RL---------AGKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HHH------HH---------HHHH
Confidence 5666666654 7899999999999875 45432 22111111 00 000 00 0112
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCC
Q 036287 257 GCIVDLLSRVGRPEEAYDFITNM----KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRS 316 (488)
Q Consensus 257 ~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 316 (488)
..+...|.+.|++++|...+++. +-.| ....|..+..++...|+.++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 35667788999999999988887 2223 357888999999999999999999888876554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00042 Score=69.44 Aligned_cols=298 Identities=15% Similarity=0.108 Sum_probs=173.1
Q ss_pred ceeeHHHHHHHHHHcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 036287 49 DVVASTVMINCYVEHGLVENAFEVFSRVKVK---DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRP-NEVTIVCVLS 124 (488)
Q Consensus 49 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 124 (488)
+...|..|.-+...+|+++.+.+.|++...- ....|+.+...|...|....|..+++.-......| |...+...-.
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 5778888888999999999999999986532 45689999999999999999999998766543224 3444444444
Q ss_pred HHH-hcCchHHHHHHHHHHHHc--C----CCC-------------------------------------------cHhHH
Q 036287 125 ACS-QLGALELGRWIHSYMGKH--R----IDL-------------------------------------------NHIVG 154 (488)
Q Consensus 125 ~~~-~~~~~~~a~~~~~~~~~~--g----~~~-------------------------------------------~~~~~ 154 (488)
.|. +.+..+++..+-..++.. + +.| |..+.
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~i 481 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVI 481 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence 443 345555555554444441 1 111 11111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccc----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--------------
Q 036287 155 GALINMYSRCGDIDKALQVFEEMKE----RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPT-------------- 216 (488)
Q Consensus 155 ~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-------------- 216 (488)
.-|.--|+..++++.|.....+..+ .+...|..+.-.+...+++.+|+.+.+...+. .|+
T Consensus 482 f~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N~~l~~~~~~i~~~ 559 (799)
T KOG4162|consen 482 FYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FGDNHVLMDGKIHIELT 559 (799)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhhhhhchhhhhhhhh
Confidence 1222334455555555555544332 35566666666666667777777766655542 111
Q ss_pred -------HHHHHHHHHHHhc------cC-----------------CHHHH-------HHHHH----hcc-----cccCcc
Q 036287 217 -------KVTFVGVLNACSH------GG-----------------LVDLG-------FEIFQ----SMT-----RDYGIE 250 (488)
Q Consensus 217 -------~~t~~~ll~a~~~------~g-----------------~~~~a-------~~~~~----~~~-----~~~~~~ 250 (488)
..|...++...-. .+ +..++ ..... .+. ....+.
T Consensus 560 ~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~ 639 (799)
T KOG4162|consen 560 FNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVL 639 (799)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccccc
Confidence 0111222211110 00 00000 00000 000 000111
Q ss_pred cC--------hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCch
Q 036287 251 PQ--------IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSG 320 (488)
Q Consensus 251 p~--------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 320 (488)
|+ ...|....+.+.+.+..++|...+.+. ++.| .+..|......+...|+.++|...|..++.++|+++.
T Consensus 640 ~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~ 719 (799)
T KOG4162|consen 640 PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP 719 (799)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH
Confidence 11 122344555666677777776655555 3334 3556666666677778888888888888888888888
Q ss_pred hHHHHHHHHhcCCChHHHHH--HHHHHHhC
Q 036287 321 TYVLLSNAYASSGKWKEAVQ--IRAKMKEA 348 (488)
Q Consensus 321 ~~~~l~~~~~~~g~~~~a~~--~~~~m~~~ 348 (488)
...+++.++.+.|+..-|.. ++..+.+.
T Consensus 720 s~~Ala~~lle~G~~~la~~~~~L~dalr~ 749 (799)
T KOG4162|consen 720 SMTALAELLLELGSPRLAEKRSLLSDALRL 749 (799)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhh
Confidence 88888888888887777766 66666553
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.9e-06 Score=67.45 Aligned_cols=104 Identities=13% Similarity=0.018 Sum_probs=62.7
Q ss_pred HHHHHHhccCCHHHHHHHHHhcccccCccc-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh
Q 036287 222 GVLNACSHGGLVDLGFEIFQSMTRDYGIEP-QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIH 298 (488)
Q Consensus 222 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 298 (488)
....++...|++++|...|+.+.. +.| +...|..+..++.+.|++++|...|++. ...| +...|..+..++...
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 344455556666666666666552 223 3555566666666666666666666665 3333 456666666666667
Q ss_pred CChhHHHHHHHHHHhcCCCCchhHHHHHHH
Q 036287 299 GKLQLGEQIAKRLLDCRSADSGTYVLLSNA 328 (488)
Q Consensus 299 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 328 (488)
|+.++|...++.+++..|.++..+.....+
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 777777777777777777666665554443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.8e-05 Score=73.48 Aligned_cols=106 Identities=13% Similarity=0.193 Sum_probs=74.5
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChH
Q 036287 191 GLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPE 270 (488)
Q Consensus 191 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 270 (488)
+......+.+|+.+++.++..+. -.--|..+..-|+..|+++.|.++|-+.- .++--|++|++.|+++
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccHH
Confidence 34455677778888877776432 22345667788999999999999887653 3455788999999999
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHHhCChhHHHHHH
Q 036287 271 EAYDFITNM-KIAPDHIMLGSLLSACKIHGKLQLGEQIA 308 (488)
Q Consensus 271 ~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 308 (488)
.|.++-.+. +-......|-+-..-.-.+|++.+|++++
T Consensus 809 da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 809 DAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 999988776 43334556666666667777777766554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.8e-05 Score=79.39 Aligned_cols=160 Identities=11% Similarity=0.069 Sum_probs=126.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHH
Q 036287 180 RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKV-TFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYG 257 (488)
Q Consensus 180 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 257 (488)
.++..+..|.....+.|.+++|..+++...+ ..||.. ....+..++.+.+.+++|+..++.... ..|+ .....
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence 4578888899999999999999999999998 567654 555677889999999999999999984 3554 67778
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCCh
Q 036287 258 CIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKW 335 (488)
Q Consensus 258 ~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 335 (488)
.+..++.+.|++++|..+|++. ...|+ ..+|.++..++...|+.++|...|+++++...+....|+.++. +.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~------~~ 232 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV------DL 232 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH------HH
Confidence 8889999999999999999998 33444 7899999999999999999999999999977555566554432 33
Q ss_pred HHHHHHHHHHHhCCC
Q 036287 336 KEAVQIRAKMKEAGV 350 (488)
Q Consensus 336 ~~a~~~~~~m~~~g~ 350 (488)
..-..+++.+.-.+.
T Consensus 233 ~~~~~~~~~~~~~~~ 247 (694)
T PRK15179 233 NADLAALRRLGVEGD 247 (694)
T ss_pred HHHHHHHHHcCcccc
Confidence 344455555544443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.2e-05 Score=67.51 Aligned_cols=153 Identities=9% Similarity=0.121 Sum_probs=103.0
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 036287 158 INMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGF 237 (488)
Q Consensus 158 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 237 (488)
+-.|.+.|+++......+.+..+. ..|...++.++++..+++..+. -+.|...+..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345666776666544433322211 0112245566777777766664 2455666777777788888888888
Q ss_pred HHHHhcccccCccc-ChhhHHHHHHH-HHhcCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 036287 238 EIFQSMTRDYGIEP-QIEHYGCIVDL-LSRVGR--PEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRL 311 (488)
Q Consensus 238 ~~~~~~~~~~~~~p-~~~~~~~li~~-~~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 311 (488)
..|+...+ +.| +...+..+..+ |.+.|+ .++|.+++++. ...| +...+..+...+...|++++|...++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88887763 334 46677777775 466676 48888888887 4555 4677888888889999999999999999
Q ss_pred HhcCCCCchhH
Q 036287 312 LDCRSADSGTY 322 (488)
Q Consensus 312 ~~~~p~~~~~~ 322 (488)
++..|++..-+
T Consensus 171 L~l~~~~~~r~ 181 (198)
T PRK10370 171 LDLNSPRVNRT 181 (198)
T ss_pred HhhCCCCccHH
Confidence 99887775443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.7e-05 Score=67.30 Aligned_cols=117 Identities=19% Similarity=0.192 Sum_probs=57.5
Q ss_pred HHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCC
Q 036287 223 VLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGK 300 (488)
Q Consensus 223 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 300 (488)
......+.|++.+|...+++... .-++|...|+.+.-+|.+.|++++|..-|.+. .+.| ++...+.|...+.-.|+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 34444444555555555544442 33444455555555555555555554444443 3333 23444555555555555
Q ss_pred hhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHH
Q 036287 301 LQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQI 341 (488)
Q Consensus 301 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 341 (488)
.+.|+.++.......+.++.+-..|..+....|++++|.++
T Consensus 184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 184 LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 55555555555555444545555555555555555555544
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.2e-06 Score=68.06 Aligned_cols=95 Identities=7% Similarity=-0.143 Sum_probs=86.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcC
Q 036287 255 HYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASS 332 (488)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 332 (488)
.+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...++++.+++|.++.++..++.++...
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 3556788889999999999999987 5555 5888999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 036287 333 GKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 333 g~~~~a~~~~~~m~~~g 349 (488)
|++++|...++...+..
T Consensus 106 g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 106 GEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999987643
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0006 Score=64.04 Aligned_cols=210 Identities=11% Similarity=0.021 Sum_probs=150.0
Q ss_pred eeHHHHHHHHHHcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036287 51 VASTVMINCYVEHGLVENAFEVFSRVKV---KDTVCWTAMIDGLVRNG-EMARALDLFREMQRDNVRPNEVTIVCVLSAC 126 (488)
Q Consensus 51 ~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 126 (488)
.++..+-..+...++.++|+.+.+.+.. .+..+|+.-...+...| ++++++..++++.+.+ +-+..+|+.....+
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 4566777777888999999999998763 34557877777777777 6799999999999875 33556677665556
Q ss_pred HhcCch--HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhc---CCh
Q 036287 127 SQLGAL--ELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMH---GRS 198 (488)
Q Consensus 127 ~~~~~~--~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~---g~~ 198 (488)
.+.+.. +.+..+...+++.. +.+..+|+...-++...|++++|++.++++.+ .|..+|+.....+.+. |..
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence 666653 67788888888776 56788899888889999999999999999886 5678898887776654 222
Q ss_pred ----hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----CCHHHHHHHHHhcccccCcccChhhHHHHHHHHHh
Q 036287 199 ----IEAVEMFREMINQGIRPTKVTFVGVLNACSHG----GLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSR 265 (488)
Q Consensus 199 ----~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 265 (488)
+++++...+++.. .+-|...++.+...+... +...+|..++...... -..+......|++.|+.
T Consensus 196 ~~~~e~el~y~~~aI~~-~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~--~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILA-NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK--DSNHVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHh-CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc--cCCcHHHHHHHHHHHHh
Confidence 4566777677664 234556666666666552 3345677777765531 12345566777777764
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=6.6e-05 Score=75.28 Aligned_cols=58 Identities=17% Similarity=0.212 Sum_probs=36.8
Q ss_pred chhhHHHHHH--HHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcC
Q 036287 17 NRSTRLKLVE--LYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVK 77 (488)
Q Consensus 17 ~~~~~~~li~--~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 77 (488)
|..|-.++++ .|.--|+++.|.+-.+.+.. ..+|..|.+.+.+..++|-|.-.+-.|.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS---~~vW~nmA~McVkT~RLDVAkVClGhm~ 784 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS---DSVWDNMASMCVKTRRLDVAKVCLGHMK 784 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh---hHHHHHHHHHhhhhccccHHHHhhhhhh
Confidence 4555555553 45666777777666655544 5577777777777777776666655554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00023 Score=67.81 Aligned_cols=176 Identities=19% Similarity=0.155 Sum_probs=121.1
Q ss_pred HHHHHHHHHhccc------CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 036287 167 IDKALQVFEEMKE------RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIF 240 (488)
Q Consensus 167 ~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 240 (488)
+.+++..-++++. ++.......+.+.........+-.++-+-.+ ..-...-|..-+ .+...|+.++|+..+
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~aa~YG~A~-~~~~~~~~d~A~~~l 329 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK--RGGLAAQYGRAL-QTYLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC--ccchHHHHHHHH-HHHHhcccchHHHHH
Confidence 4445555555553 3445555555544333322223222222222 111222233333 345678899999999
Q ss_pred HhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC
Q 036287 241 QSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD 318 (488)
Q Consensus 241 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 318 (488)
+.+.++ .+-|+.......+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|++.+|+.+++.....+|.+
T Consensus 330 ~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d 407 (484)
T COG4783 330 QPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED 407 (484)
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence 998853 3344666677888999999999999999988 66676 6778888899999999999999999999999999
Q ss_pred chhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 319 SGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 319 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
+..|..|..+|...|+..++...+.++..
T Consensus 408 p~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 408 PNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred chHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999999999999998888888776643
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00015 Score=68.95 Aligned_cols=116 Identities=13% Similarity=0.035 Sum_probs=53.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHH
Q 036287 90 GLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDK 169 (488)
Q Consensus 90 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 169 (488)
.+...|++++|+..++.+.+. .+-|..........+...++.++|.+.++.++... +....+.-.+..+|.+.|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHH
Confidence 334445555555555554443 12222333333344445555555555555554442 1113344444555555555555
Q ss_pred HHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 036287 170 ALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFRE 207 (488)
Q Consensus 170 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 207 (488)
|..+++.... .|...|..|..+|...|+..+|....-+
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 5555544432 2444555555555555555555444443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.3e-05 Score=65.48 Aligned_cols=154 Identities=16% Similarity=0.135 Sum_probs=100.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 036287 54 TVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLG 130 (488)
Q Consensus 54 ~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 130 (488)
..+-..+...|+-+.+..+..... ..|....+.++....++|++.+|+..|++..... ++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 455556666666666666665533 2344555667777777777777777777776643 567777777777777777
Q ss_pred chHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 036287 131 ALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFRE 207 (488)
Q Consensus 131 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 207 (488)
+.+.|..-|.+..+.. +-+..+.|.|.-.|.-.|+++.|..++..... .|...-..+.......|++++|..+-.+
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 7777777777777664 33445556666666667777777777765432 3555666666666677777777766654
Q ss_pred HH
Q 036287 208 MI 209 (488)
Q Consensus 208 m~ 209 (488)
-.
T Consensus 228 e~ 229 (257)
T COG5010 228 EL 229 (257)
T ss_pred cc
Confidence 43
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0001 Score=75.53 Aligned_cols=81 Identities=12% Similarity=0.003 Sum_probs=56.8
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHH
Q 036287 264 SRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQI 341 (488)
Q Consensus 264 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 341 (488)
+..|.+.-|...|-+- -..| ...+|..+...|....|++.|...|.....++|.|...|......-...|+.-++..+
T Consensus 827 sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~l 906 (1238)
T KOG1127|consen 827 SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLIL 906 (1238)
T ss_pred hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 4444555444443332 1222 4667777777777888889999999999999999888888777777777887777777
Q ss_pred HHH
Q 036287 342 RAK 344 (488)
Q Consensus 342 ~~~ 344 (488)
|..
T Consensus 907 faH 909 (1238)
T KOG1127|consen 907 FAH 909 (1238)
T ss_pred HHh
Confidence 765
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00054 Score=65.93 Aligned_cols=285 Identities=15% Similarity=0.100 Sum_probs=190.0
Q ss_pred HHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCchH
Q 036287 58 NCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPN-EVTIVCVLSACSQLGALE 133 (488)
Q Consensus 58 ~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~ 133 (488)
++.+..|+++.|...|-+.. ++|.+.|..=..+|+..|++++|++=-.+-++ +.|+ ...|+-...+...+|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHH
Confidence 45567899999999998743 56888999999999999999999987777666 4677 468888999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC------------------------------------------------
Q 036287 134 LGRWIHSYMGKHRIDLNHIVGGALINMYSRCG------------------------------------------------ 165 (488)
Q Consensus 134 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g------------------------------------------------ 165 (488)
+|..-|..-++.. +.+....+.|.+++.-..
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 9999998887765 456666777776662110
Q ss_pred ---CHHHHHHHHHhcc----------------cC------------C----------HHHHHHHHHHHHhcCChhHHHHH
Q 036287 166 ---DIDKALQVFEEMK----------------ER------------D----------VTTYNSLIAGLAMHGRSIEAVEM 204 (488)
Q Consensus 166 ---~~~~A~~~~~~~~----------------~~------------~----------~~~~~~li~~~~~~g~~~~A~~l 204 (488)
.+..|..++.... .| | ..-.-.+.++..+..++..|++-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 0111111111100 00 0 01233455566666777778888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCccc--C----hhhHHHHHHHHHhcCChHHHHHHHHh
Q 036287 205 FREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEP--Q----IEHYGCIVDLLSRVGRPEEAYDFITN 278 (488)
Q Consensus 205 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~----~~~~~~li~~~~~~g~~~~A~~~~~~ 278 (488)
+....+. .-+..-++....+|...|...+.........+. |-.. + ......+..+|.+.++++.|+..+++
T Consensus 247 y~~a~el--~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~-gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 247 YAKALEL--ATDITYLNNIAAVYLERGKYAECIELCEKAVEV-GRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHhH--hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHH-hHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 8777764 333333344445577777666655554444332 1111 0 11222344467777888888888877
Q ss_pred C---C------------------------CCCCH-HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 036287 279 M---K------------------------IAPDH-IMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYA 330 (488)
Q Consensus 279 m---~------------------------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 330 (488)
. . +.|.. .--..=...+.+.|++..|.+.+.++++.+|+|+..|....-+|.
T Consensus 324 aLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~ 403 (539)
T KOG0548|consen 324 ALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYL 403 (539)
T ss_pred HhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 5 1 22221 111112345678899999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHhC
Q 036287 331 SSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 331 ~~g~~~~a~~~~~~m~~~ 348 (488)
+.|.+..|++=-+...+.
T Consensus 404 kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 404 KLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHhhHHHHHHHHHHHHhc
Confidence 999999999876665554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.4e-06 Score=52.34 Aligned_cols=35 Identities=37% Similarity=0.787 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNE 116 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 116 (488)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.8e-05 Score=63.40 Aligned_cols=95 Identities=8% Similarity=-0.050 Sum_probs=83.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 036287 253 IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYA 330 (488)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 330 (488)
....-.+...+...|++++|.++|+-. .+.| +..-|..|...|...|++++|+..+..+..++|+++.++..+..+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 444455666777899999999999988 5555 47788899999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHh
Q 036287 331 SSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 331 ~~g~~~~a~~~~~~m~~ 347 (488)
..|+.+.|.+.|+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998865
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00029 Score=73.01 Aligned_cols=142 Identities=11% Similarity=0.080 Sum_probs=116.1
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH-HHH
Q 036287 147 IDLNHIVGGALINMYSRCGDIDKALQVFEEMKE--R-DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVT-FVG 222 (488)
Q Consensus 147 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ 222 (488)
.+.+...+-.|.......|.+++|+.+++...+ | +...+..+...+.+.+++++|+..+++.... .|+..+ ...
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 456688888899999999999999999999875 4 5567888999999999999999999999984 566555 445
Q ss_pred HHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHH
Q 036287 223 VLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM--KIAPDHIMLGSLL 292 (488)
Q Consensus 223 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll 292 (488)
+..++.+.|++++|..+|+++... .+-+...+..+...+-..|+.++|...|++. ...|-+.-|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 667788999999999999999852 2233788889999999999999999999987 3334455555544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00042 Score=63.17 Aligned_cols=328 Identities=12% Similarity=0.076 Sum_probs=198.2
Q ss_pred CchhhH-HHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCC--CCHHHHHH-HHHHH
Q 036287 16 SNRSTR-LKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKV--KDTVCWTA-MIDGL 91 (488)
Q Consensus 16 ~~~~~~-~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~-li~~~ 91 (488)
|+.... ..|...-.|.|+-++-..+-..+.+. ..---+|.+.....-.+++|++++.++.. |+-...|. |.-+|
T Consensus 118 ~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~--~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCy 195 (557)
T KOG3785|consen 118 PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT--LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCY 195 (557)
T ss_pred CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh--HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHH
Confidence 444444 45556667788877777666665542 23334555555556678999999999874 44445554 44577
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHH--------------HHHHHHHcCC----------
Q 036287 92 VRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRW--------------IHSYMGKHRI---------- 147 (488)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~--------------~~~~~~~~g~---------- 147 (488)
.+..-++-+.+++.--++. ++.+....+..+....+.=+-..+.+ ..+.+.+.++
T Consensus 196 yKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgAL 274 (557)
T KOG3785|consen 196 YKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGAL 274 (557)
T ss_pred HhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHH
Confidence 8888888888888777664 33333444433332222211111111 1122222211
Q ss_pred --CC-----cHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCC-------hhHHHHHHHHHHHcCC
Q 036287 148 --DL-----NHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGR-------SIEAVEMFREMINQGI 213 (488)
Q Consensus 148 --~~-----~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~~g~ 213 (488)
-| -+..-..|+--|.+.|++.+|..+.+++....+.-|-.-.-.++..|+ ..-|.+.|+-.-+++.
T Consensus 275 qVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ 354 (557)
T KOG3785|consen 275 QVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESAL 354 (557)
T ss_pred HhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccc
Confidence 01 112223456678899999999999988876555544443334444543 3345555554444444
Q ss_pred CCCHHH-HHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHH
Q 036287 214 RPTKVT-FVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIA-PDHIMLGS 290 (488)
Q Consensus 214 ~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ 290 (488)
..|... -.++.+++.-..++++.+.+++.+.. +=...|...+ .+..+++..|...+|+++|-.+ +.+ .|..+|.+
T Consensus 355 ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s 432 (557)
T KOG3785|consen 355 ECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKS 432 (557)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHH
Confidence 433322 22344445555678899998888874 3333444444 4788999999999999999887 222 36777877
Q ss_pred HHH-HHHHhCChhHHHHHHHHHHhcC-CCCc-hhHHHHHHHHhcCCChHHHHHHHHHHHhCCCc
Q 036287 291 LLS-ACKIHGKLQLGEQIAKRLLDCR-SADS-GTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQ 351 (488)
Q Consensus 291 ll~-~~~~~g~~~~a~~~~~~~~~~~-p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 351 (488)
++. .|...+.++.|..++ ++.+ |.+. .....+.+-|.+++.+--|.+.|+.+...+..
T Consensus 433 ~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 433 MLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 665 557778888887655 4444 3322 23445678899999999999999988765433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00026 Score=71.21 Aligned_cols=239 Identities=16% Similarity=0.171 Sum_probs=165.5
Q ss_pred eeeHHHHHH--HHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-C--------CCCCHHH
Q 036287 50 VVASTVMIN--CYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRD-N--------VRPNEVT 118 (488)
Q Consensus 50 ~~~~~~li~--~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~~~t 118 (488)
..+--++++ .|..-|+.|.|.+-.+.+. +...|..|.+.|++..+.+-|.-.+-.|... | -.|+ .+
T Consensus 726 ~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~ 802 (1416)
T KOG3617|consen 726 ESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-ED 802 (1416)
T ss_pred HHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-ch
Confidence 666666663 4677899999988777664 4578999999999999888887777666431 1 1232 22
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCC-HHHHHHHHHHHHhcCC
Q 036287 119 IVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD-VTTYNSLIAGLAMHGR 197 (488)
Q Consensus 119 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~ 197 (488)
=.-+.-....+|.+++|+.+|.+-.+.. .|=..|-..|.+++|.++-+.-..-. -.+|.....-+-..++
T Consensus 803 eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 803 EAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRD 873 (1416)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhcc
Confidence 2333334568899999999999887643 45567888999999998866433211 2356556666666777
Q ss_pred hhHHHHHHHHH----------HHcC---------CCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHH
Q 036287 198 SIEAVEMFREM----------INQG---------IRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGC 258 (488)
Q Consensus 198 ~~~A~~l~~~m----------~~~g---------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 258 (488)
.+.|++.|++. .... -..|...|..........|+.+.|+.+|..... |-+
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs 943 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFS 943 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhh
Confidence 88888777652 2211 122444555566667778999999999888763 456
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHh
Q 036287 259 IVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLD 313 (488)
Q Consensus 259 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 313 (488)
++...+-.|+.++|-++-++-+ |......|.+.|-..|++.+|...|.++..
T Consensus 944 ~VrI~C~qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred heeeEeeccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 6777777888888888887765 555556677788888888888877776644
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.3e-05 Score=73.18 Aligned_cols=120 Identities=11% Similarity=0.075 Sum_probs=71.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc
Q 036287 85 TAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRC 164 (488)
Q Consensus 85 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 164 (488)
.+|+..+...++++.|+.+|+++.+.. |+. ...++..+...++-.+|.+++.+.++.. +.+..+...-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344555555666666666666666543 432 2335555555556666666666665442 33455555555666666
Q ss_pred CCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036287 165 GDIDKALQVFEEMKE--R-DVTTYNSLIAGLAMHGRSIEAVEMFREMI 209 (488)
Q Consensus 165 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 209 (488)
++.+.|.++.+++.+ | +..+|..|..+|.+.|+++.|+-.++.+-
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777766654 3 33467777777777777777776666543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0016 Score=57.27 Aligned_cols=114 Identities=17% Similarity=0.157 Sum_probs=78.0
Q ss_pred ccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHH----hcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCChh
Q 036287 229 HGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLS----RVGRPEEAYDFITNM--KIAPDHIMLGSLLSACKIHGKLQ 302 (488)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~ 302 (488)
+..+++-|.+.++.|.+ + .+..+.+.|..++. ..+.+.+|.-+|++| +..|+..+.+-...++...|+++
T Consensus 149 k~~r~d~A~~~lk~mq~---i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~e 224 (299)
T KOG3081|consen 149 KMHRFDLAEKELKKMQQ---I-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYE 224 (299)
T ss_pred HHHHHHHHHHHHHHHHc---c-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHH
Confidence 34455555555555552 1 22233443444443 345677888888888 46788888888888889999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHH-HHHHHHHH
Q 036287 303 LGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEA-VQIRAKMK 346 (488)
Q Consensus 303 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 346 (488)
+|+.+++.++..++.++.+...++-.-...|.-.++ .+.+.+++
T Consensus 225 eAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 225 EAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 999999999999988888888888777777775443 34444443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.2e-06 Score=51.39 Aligned_cols=35 Identities=51% Similarity=0.892 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 036287 183 TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTK 217 (488)
Q Consensus 183 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 217 (488)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00042 Score=60.81 Aligned_cols=187 Identities=13% Similarity=0.101 Sum_probs=126.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHH-HHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 036287 157 LINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAV-EMFREMINQGIRPTKVTFVGVLNACSHGGLVDL 235 (488)
Q Consensus 157 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 235 (488)
+-..|...|.......-...-..+.......+......-++.++-+ ++.+.+.......+......-...|.+.|++++
T Consensus 47 ~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~de 126 (299)
T KOG3081|consen 47 MYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDE 126 (299)
T ss_pred HHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHH
Confidence 3445555555443332222222233333333333333344444433 344555555455554444455567999999999
Q ss_pred HHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHh----CChhHHHHHHHHH
Q 036287 236 GFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIH----GKLQLGEQIAKRL 311 (488)
Q Consensus 236 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~----g~~~~a~~~~~~~ 311 (488)
|++..+... +......=+..+.+..+++-|.+.+++|..-.+..|.+.|..++.+. +.+..|.-+|+++
T Consensus 127 Al~~~~~~~-------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~ 199 (299)
T KOG3081|consen 127 ALKALHLGE-------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEEL 199 (299)
T ss_pred HHHHHhccc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 999887632 33445555667788899999999999995444677888788777554 4688999999999
Q ss_pred HhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 036287 312 LDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 312 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 350 (488)
.+.-|+.+.+.+..+.++...|+|++|..++++...+.-
T Consensus 200 s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 200 SEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred hcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 998888889999999999999999999999999987644
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.6e-05 Score=73.72 Aligned_cols=122 Identities=17% Similarity=0.211 Sum_probs=93.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 036287 220 FVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKI 297 (488)
Q Consensus 220 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 297 (488)
..+|+..+...++++.|..+|+++.+. .|+ ....|+..+...++-.+|.+++++. ...| +...+..-...|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 344556666667777777777777643 244 3445667777777777787777776 3233 56666666777889
Q ss_pred hCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHH
Q 036287 298 HGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMK 346 (488)
Q Consensus 298 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 346 (488)
.++.+.|..+++++.+..|.+..+|..|+.+|...|++++|+..++.+-
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999988774
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0049 Score=59.63 Aligned_cols=334 Identities=11% Similarity=0.093 Sum_probs=190.6
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcCC--CCHHHHHHHHHH
Q 036287 15 RSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVKV--KDTVCWTAMIDG 90 (488)
Q Consensus 15 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~ 90 (488)
+-|..+|+.||+-+... .++++++.++++.. +..+..|..-|..-.+..+++..+++|.+... -++..|..-|+-
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~Y 95 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSY 95 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 45888999999988666 99999999999876 45678999999999999999999999999763 377788777764
Q ss_pred HHH-cCCHHH----HHHHHHHH-HHCCCCCCH-HHHHHHHH---------HHHhcCchHHHHHHHHHHHHcCCCCcHhHH
Q 036287 91 LVR-NGEMAR----ALDLFREM-QRDNVRPNE-VTIVCVLS---------ACSQLGALELGRWIHSYMGKHRIDLNHIVG 154 (488)
Q Consensus 91 ~~~-~g~~~~----A~~~~~~m-~~~g~~p~~-~t~~~ll~---------~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 154 (488)
-.+ +|.... ..+.|+-. .+.|..+-. ..|+..+. -+....+++..+++++.++...+..=...|
T Consensus 96 VR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW 175 (656)
T KOG1914|consen 96 VRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLW 175 (656)
T ss_pred HHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHH
Confidence 332 222222 22333322 234433322 22333222 233444667777788877764332212222
Q ss_pred HHH------HHH-------HHhcCCHHHHHHHHHhccc---------C------------CHHHHHHHHH----------
Q 036287 155 GAL------INM-------YSRCGDIDKALQVFEEMKE---------R------------DVTTYNSLIA---------- 190 (488)
Q Consensus 155 ~~l------i~~-------y~~~g~~~~A~~~~~~~~~---------~------------~~~~~~~li~---------- 190 (488)
+-. |+. --+...+..|++++++... + .+..|-.+|.
T Consensus 176 ~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~ 255 (656)
T KOG1914|consen 176 KDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTL 255 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccc
Confidence 110 100 0122345556666555431 0 0011211111
Q ss_pred ---------------------------------------HHHhcCC-------hhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036287 191 ---------------------------------------GLAMHGR-------SIEAVEMFREMINQGIRPTKVTFVGVL 224 (488)
Q Consensus 191 ---------------------------------------~~~~~g~-------~~~A~~l~~~m~~~g~~p~~~t~~~ll 224 (488)
.+...|+ .+++..+++.....-..-+..+|..+.
T Consensus 256 ~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a 335 (656)
T KOG1914|consen 256 DGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALA 335 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222 334444444443322222333333222
Q ss_pred HHHh---ccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC---CCCC-CHHHHHHHHHHHHH
Q 036287 225 NACS---HGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM---KIAP-DHIMLGSLLSACKI 297 (488)
Q Consensus 225 ~a~~---~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p-~~~~~~~ll~~~~~ 297 (488)
+.=. .....+....+++++.....+.|+. +|-+++..-.|..-+..|..+|.+. +..+ ++.+.++++.-++
T Consensus 336 ~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c- 413 (656)
T KOG1914|consen 336 DYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC- 413 (656)
T ss_pred hhHHHhcccchhhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-
Confidence 2111 1112444455555555444445543 5667777777777788888888777 3333 5666666666554
Q ss_pred hCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCCc
Q 036287 298 HGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQ 351 (488)
Q Consensus 298 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 351 (488)
.++.+-|.++|+--++..++++..-...++-+...++-..+..+|++....++.
T Consensus 414 skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 414 SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 467777888888777777777665566677777778878888888887776544
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.7e-06 Score=50.07 Aligned_cols=33 Identities=30% Similarity=0.608 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQRDNVRP 114 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 114 (488)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 588999999999999999999999999988887
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0029 Score=65.38 Aligned_cols=242 Identities=12% Similarity=0.138 Sum_probs=153.4
Q ss_pred ceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 036287 49 DVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQ 128 (488)
Q Consensus 49 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 128 (488)
.+.+|+.+..+-.+.|.+.+|.+-|-+.. |+..|.-.+....+.|.|++-.+.+...++..-.|...+ .++-+|++
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyikad--Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAk 1178 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKAD--DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAK 1178 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhcC--CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHH
Confidence 47799999999999999999999886554 567888999999999999999999888777665565443 56778888
Q ss_pred cCchHHHHHHHH-----HHHHcC--------------CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHH
Q 036287 129 LGALELGRWIHS-----YMGKHR--------------IDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLI 189 (488)
Q Consensus 129 ~~~~~~a~~~~~-----~~~~~g--------------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li 189 (488)
.+++.+.+++.. .+...| +-.++.-|..|.......|+++.|...-++. .+..+|...-
T Consensus 1179 t~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA--ns~ktWK~Vc 1256 (1666)
T KOG0985|consen 1179 TNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA--NSTKTWKEVC 1256 (1666)
T ss_pred hchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc--cchhHHHHHH
Confidence 887776655431 000000 0012233344444445555555554433322 3667888887
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCccc-ChhhHHHHHHHHHhcCC
Q 036287 190 AGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEP-QIEHYGCIVDLLSRVGR 268 (488)
Q Consensus 190 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 268 (488)
.+|...+.+.-| +|-..++-......--++..|-..|-+++-..+++... |++- ....|+-|.-.|++- +
T Consensus 1257 faCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L---GLERAHMgmfTELaiLYsky-k 1327 (1666)
T KOG0985|consen 1257 FACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL---GLERAHMGMFTELAILYSKY-K 1327 (1666)
T ss_pred HHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh---chhHHHHHHHHHHHHHHHhc-C
Confidence 777766554322 23233333445567779999999999999999888765 5443 355677777778764 3
Q ss_pred hHHHHHHHH----hCCCC------CCHHHHHHHHHHHHHhCChhHHH
Q 036287 269 PEEAYDFIT----NMKIA------PDHIMLGSLLSACKIHGKLQLGE 305 (488)
Q Consensus 269 ~~~A~~~~~----~m~~~------p~~~~~~~ll~~~~~~g~~~~a~ 305 (488)
+++..+.++ +..++ .....|+.+.-.|.+-..++.|.
T Consensus 1328 p~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1328 PEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 344333322 22211 12455666666666655555543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.6e-05 Score=62.85 Aligned_cols=96 Identities=15% Similarity=0.152 Sum_probs=78.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 036287 253 IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYA 330 (488)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 330 (488)
......+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|.++..+..+...|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 455666777788888888888888876 4344 56778888888888899999999999988888888888888899999
Q ss_pred cCCChHHHHHHHHHHHhC
Q 036287 331 SSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 331 ~~g~~~~a~~~~~~m~~~ 348 (488)
..|++++|.+.++...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999988877664
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00013 Score=59.62 Aligned_cols=99 Identities=13% Similarity=0.089 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhc
Q 036287 119 IVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMH 195 (488)
Q Consensus 119 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 195 (488)
...+...+...|+.++|.+.++.+...+ +.+...+..+...|.+.|++++|..+|++... .+...+..+...|...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 3344444555555555555555555443 33445555555555555566665555555432 2344555555566666
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHH
Q 036287 196 GRSIEAVEMFREMINQGIRPTKVTF 220 (488)
Q Consensus 196 g~~~~A~~l~~~m~~~g~~p~~~t~ 220 (488)
|++++|+..|++..+ ..|+...+
T Consensus 99 g~~~~A~~~~~~al~--~~p~~~~~ 121 (135)
T TIGR02552 99 GEPESALKALDLAIE--ICGENPEY 121 (135)
T ss_pred CCHHHHHHHHHHHHH--hccccchH
Confidence 666666666666655 33444443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0007 Score=59.04 Aligned_cols=167 Identities=14% Similarity=0.102 Sum_probs=113.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHH---HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 036287 154 GGALINMYSRCGDIDKALQVFEEMKERDVTTYNSL---IAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHG 230 (488)
Q Consensus 154 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 230 (488)
+.-+.-+...+|+.+.|..+++++..+-+.++... .--+-..|++++|+++++.+.+.+ +.|.+++..=+...-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 33444445556777777777776654211111111 112445788899999999888864 55667776666666667
Q ss_pred CCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHH---hCChhHHH
Q 036287 231 GLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLSACKI---HGKLQLGE 305 (488)
Q Consensus 231 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~---~g~~~~a~ 305 (488)
|+.-+|.+-+....+ .+..|...|.-+.+.|...|++++|.-.++++ -+.|. +..+..+...+.. ..+.+.+.
T Consensus 134 GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 777777777777765 56778889999999999999999999999988 34453 4444555554433 34678899
Q ss_pred HHHHHHHhcCCCCchhHH
Q 036287 306 QIAKRLLDCRSADSGTYV 323 (488)
Q Consensus 306 ~~~~~~~~~~p~~~~~~~ 323 (488)
+.+.+.+++.|.+...+.
T Consensus 212 kyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHhChHhHHHHH
Confidence 999999999986644443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.8e-06 Score=48.63 Aligned_cols=33 Identities=39% Similarity=0.687 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 036287 183 TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRP 215 (488)
Q Consensus 183 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 215 (488)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888999999988888877
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00079 Score=55.66 Aligned_cols=123 Identities=14% Similarity=0.165 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCc--HhHHHHH
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRDNVRPN---EVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLN--HIVGGAL 157 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~l 157 (488)
.|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+......++ ......|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 4777777777777777753 222 12333344666777888888888887777653332 2233446
Q ss_pred HHHHHhcCCHHHHHHHHHhcccC--CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 036287 158 INMYSRCGDIDKALQVFEEMKER--DVTTYNSLIAGLAMHGRSIEAVEMFRE 207 (488)
Q Consensus 158 i~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~ 207 (488)
...+...|++++|+..++....+ ....+......|.+.|+.++|...|++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 67777778888888777665443 234455666677777777777777765
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00013 Score=54.55 Aligned_cols=92 Identities=23% Similarity=0.285 Sum_probs=75.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCC
Q 036287 256 YGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSG 333 (488)
Q Consensus 256 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 333 (488)
+..+...+...|++++|.+.+++. ...|+ ...+..+...+...++++.|.+.++...+..|.+..++..++..+...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455677778888899998888876 44443 4677778888888899999999999999888888788888899999999
Q ss_pred ChHHHHHHHHHHHh
Q 036287 334 KWKEAVQIRAKMKE 347 (488)
Q Consensus 334 ~~~~a~~~~~~m~~ 347 (488)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999998887754
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.002 Score=67.71 Aligned_cols=221 Identities=10% Similarity=0.096 Sum_probs=137.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHH
Q 036287 78 VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTI-VCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGA 156 (488)
Q Consensus 78 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 156 (488)
..+...|..|+..|...+++++|.++.+...+. .|+...+ ..+...+.+.++.+.+..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 446778899999999999999999999876664 4554433 2333345555554444333 2
Q ss_pred HHHHHHhcCCHHHHHHHHHhccc--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 036287 157 LINMYSRCGDIDKALQVFEEMKE--RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVD 234 (488)
Q Consensus 157 li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 234 (488)
+++......++....-+...|.+ .+..++..+..+|.+.|+.++|..+|+++.+.. +-|....+.+...|+.. +++
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 33333333344333333333332 233466777888888888888888888888864 44566777777777777 888
Q ss_pred HHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 036287 235 LGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLL 312 (488)
Q Consensus 235 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 312 (488)
+|.+++.++... |...+++.++.+++.++ ...|+ ...+..+++....+-..
T Consensus 167 KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~----------- 219 (906)
T PRK14720 167 KAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREF----------- 219 (906)
T ss_pred HHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhcc-----------
Confidence 888887776532 55566777777777776 33333 22222222222211111
Q ss_pred hcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 313 DCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 313 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
..-..++..|-+.|-...+|+++..+++...+..
T Consensus 220 ---~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~ 253 (906)
T PRK14720 220 ---TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD 253 (906)
T ss_pred ---chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC
Confidence 1122456667778888899999999999997753
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.5e-05 Score=46.19 Aligned_cols=31 Identities=29% Similarity=0.687 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQRDNV 112 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 112 (488)
++||+||++|.+.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677888888888888888888888777663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00043 Score=57.28 Aligned_cols=85 Identities=18% Similarity=0.165 Sum_probs=40.3
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCC
Q 036287 259 IVDLLSRVGRPEEAYDFITNM-KIAPDH----IMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSG 333 (488)
Q Consensus 259 li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 333 (488)
+...+...|++++|...|+.. ...|+. .....|...+...|++++|...++.. ...+..+..+..++++|.+.|
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCC
Confidence 334444455555555555444 111221 22333444455555555555555442 112223345555666666666
Q ss_pred ChHHHHHHHHH
Q 036287 334 KWKEAVQIRAK 344 (488)
Q Consensus 334 ~~~~a~~~~~~ 344 (488)
++++|...|+.
T Consensus 133 ~~~~A~~~y~~ 143 (145)
T PF09976_consen 133 DYDEARAAYQK 143 (145)
T ss_pred CHHHHHHHHHH
Confidence 66666666553
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.3e-05 Score=45.37 Aligned_cols=31 Identities=52% Similarity=0.759 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 036287 183 TTYNSLIAGLAMHGRSIEAVEMFREMINQGI 213 (488)
Q Consensus 183 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 213 (488)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3678888888888888888888888877653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00039 Score=55.08 Aligned_cols=65 Identities=12% Similarity=0.035 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCch
Q 036287 256 YGCIVDLLSRVGRPEEAYDFITNM-KIAPD----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSG 320 (488)
Q Consensus 256 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 320 (488)
+..+...+.+.|++++|.+.++.+ ...|+ ..++..+..++...|+.+.|...++++++..|+++.
T Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 42 HYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 333444555555555555555544 21222 334555555555666666666666666666655543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0067 Score=53.12 Aligned_cols=161 Identities=14% Similarity=0.107 Sum_probs=124.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHH
Q 036287 184 TYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVL-NACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDL 262 (488)
Q Consensus 184 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 262 (488)
.+..++-+....|+.+.|...++++... + |.+.-...+= .-+...|..++|.++++.+.++ -+.|..+|-.=+-+
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHH
Confidence 3445556667789999999999999876 3 5443322221 2245578999999999999974 24556677766667
Q ss_pred HHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCC---hHH
Q 036287 263 LSRVGRPEEAYDFITNM--KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGK---WKE 337 (488)
Q Consensus 263 ~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~---~~~ 337 (488)
.-..|+--+|++-+... .+..|...|.-+...|...|+++.|.-.+++++=..|.++..+..+...+.-.|- .+-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 77778888888877665 5667899999999999999999999999999999999999999999988766554 556
Q ss_pred HHHHHHHHHhC
Q 036287 338 AVQIRAKMKEA 348 (488)
Q Consensus 338 a~~~~~~m~~~ 348 (488)
+.+.+.+..+.
T Consensus 210 arkyy~~alkl 220 (289)
T KOG3060|consen 210 ARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHh
Confidence 77778777654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00043 Score=54.82 Aligned_cols=96 Identities=15% Similarity=0.043 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC---chhHHHH
Q 036287 254 EHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD---SGTYVLL 325 (488)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 325 (488)
.++..++..+.+.|++++|.+.++.+ ...|+ ...+..+..++...|+++.|...++.+....|.+ +..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 35566777888899999999999887 33333 3566778889999999999999999999987764 4578889
Q ss_pred HHHHhcCCChHHHHHHHHHHHhCC
Q 036287 326 SNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 326 ~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
+.++.+.|++++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999998764
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.75 E-value=4.3e-05 Score=56.51 Aligned_cols=78 Identities=21% Similarity=0.338 Sum_probs=46.8
Q ss_pred cCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHH
Q 036287 266 VGRPEEAYDFITNM-KIAP---DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQI 341 (488)
Q Consensus 266 ~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 341 (488)
.|++++|+.+++++ ...| +...|..+..++...|++++|..++++ .+.+|.+......++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35566666666665 1122 344455566666777777777777766 555555555555667777777777777777
Q ss_pred HHH
Q 036287 342 RAK 344 (488)
Q Consensus 342 ~~~ 344 (488)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.027 Score=57.97 Aligned_cols=221 Identities=16% Similarity=0.176 Sum_probs=111.5
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHH
Q 036287 93 RNGEMARALDLFREMQRDNVRPNEVTIVCVLSAC--SQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKA 170 (488)
Q Consensus 93 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 170 (488)
..+++.+|++...++.+. .|+. .|..++.++ .+.|..++|..+++.....+.. |..+...+-.+|...|+.++|
T Consensus 21 d~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence 345566666666665554 2332 223333333 4556666666555555444433 555666666666666666666
Q ss_pred HHHHHhccc--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----------CHHHHHH
Q 036287 171 LQVFEEMKE--RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGG----------LVDLGFE 238 (488)
Q Consensus 171 ~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----------~~~~a~~ 238 (488)
..++++... |+......+..+|.+.+.+.+-.+.=-+|.+ ..+-+...|.++++...+.- -..-|..
T Consensus 97 ~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 97 VHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 666666554 3333333444455555544432222222222 13444555555555544321 1234555
Q ss_pred HHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHh-C-CCC--CCHHHHHHHHHHHHHhCChhHHHHHHHHHHhc
Q 036287 239 IFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITN-M-KIA--PDHIMLGSLLSACKIHGKLQLGEQIAKRLLDC 314 (488)
Q Consensus 239 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m-~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 314 (488)
.++.+.++.|-.-+..-.-.-...+...|++++|.+++.. . ..- .+...-+.-+..+...+++.+-.++..++++.
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 5666655432111111122223345566777777777732 2 111 12333344555666667777777777777777
Q ss_pred CCCC
Q 036287 315 RSAD 318 (488)
Q Consensus 315 ~p~~ 318 (488)
+++|
T Consensus 256 ~~Dd 259 (932)
T KOG2053|consen 256 GNDD 259 (932)
T ss_pred CCcc
Confidence 7766
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00012 Score=51.71 Aligned_cols=64 Identities=16% Similarity=0.164 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCC-ChHHHHHHHHHHHh
Q 036287 284 DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSG-KWKEAVQIRAKMKE 347 (488)
Q Consensus 284 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 347 (488)
++.+|..+...+...|++++|+..|+++++.+|.++.+|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999 79999999988765
|
... |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0039 Score=64.48 Aligned_cols=52 Identities=21% Similarity=0.211 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHH
Q 036287 153 VGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEM 204 (488)
Q Consensus 153 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 204 (488)
.|..|...|...-+...|.+.|+..-+ .|..++-.....|+...++++|..+
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHH
Confidence 344444444444444445555544433 2334444445555555555555444
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00076 Score=50.31 Aligned_cols=91 Identities=16% Similarity=0.088 Sum_probs=43.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 036287 84 WTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSR 163 (488)
Q Consensus 84 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 163 (488)
|..+...+...|++++|+..|++..+.. +.+...+..+...+...++++.|.+.+....+.. +.+..++..+..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3444555555566666666665555432 2223344444444555555555555555554433 2222344444444444
Q ss_pred cCCHHHHHHHHHh
Q 036287 164 CGDIDKALQVFEE 176 (488)
Q Consensus 164 ~g~~~~A~~~~~~ 176 (488)
.|+.+.|...+..
T Consensus 81 ~~~~~~a~~~~~~ 93 (100)
T cd00189 81 LGKYEEALEAYEK 93 (100)
T ss_pred HHhHHHHHHHHHH
Confidence 4555554444443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.06 Score=50.61 Aligned_cols=112 Identities=14% Similarity=0.137 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036287 217 KVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACK 296 (488)
Q Consensus 217 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 296 (488)
..+.+..+.-|...|+...|.++-... . .|+...|-..+.+|+..++|++-.++... +-.+.-|..++.+|.
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F----k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF----K-VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACL 248 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc----C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHH
Confidence 345555666777788888888876554 3 38888899999999999999998887654 234578899999999
Q ss_pred HhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHH
Q 036287 297 IHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKM 345 (488)
Q Consensus 297 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 345 (488)
..|+..+|..+..++ .+..-+.+|.+.|+|.+|.+.--+.
T Consensus 249 ~~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 999999998888772 2356778899999999998765443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00052 Score=65.92 Aligned_cols=103 Identities=13% Similarity=0.043 Sum_probs=81.3
Q ss_pred HHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCh
Q 036287 224 LNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKL 301 (488)
Q Consensus 224 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 301 (488)
...+...|++++|...|..+.+. -+.+...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 44566778999999999998842 2334677888888899999999999998887 5555 467788888889999999
Q ss_pred hHHHHHHHHHHhcCCCCchhHHHHHHH
Q 036287 302 QLGEQIAKRLLDCRSADSGTYVLLSNA 328 (488)
Q Consensus 302 ~~a~~~~~~~~~~~p~~~~~~~~l~~~ 328 (488)
+.|...++++++++|.++.....+..+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999887665554333
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0027 Score=58.80 Aligned_cols=141 Identities=13% Similarity=0.111 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHhcccccCcccChhhHHHHHH
Q 036287 183 TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNA-CSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVD 261 (488)
Q Consensus 183 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 261 (488)
.+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+ .+..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk--~f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLK--KFPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH--HHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
Confidence 467778888888888888888888887542 2233344433333 3335677779999998886 34566777888889
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHH
Q 036287 262 LLSRVGRPEEAYDFITNM-KIAPD----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSN 327 (488)
Q Consensus 262 ~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 327 (488)
.+.+.|+.+.|..+|++. ..-|. ...|...+.--.+.|+++...++.+++.+.-|.+. ....+++
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~-~~~~f~~ 148 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN-SLELFSD 148 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS--HHHHHHC
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh-HHHHHHH
Confidence 999999999999999887 32333 35899999999999999999999999999877653 3333443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0035 Score=53.54 Aligned_cols=130 Identities=14% Similarity=0.114 Sum_probs=81.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHH
Q 036287 80 DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPN--EVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGAL 157 (488)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 157 (488)
....+..+...+...|++++|+..|++..+....+. ...+..+...+...|+++.|...+...++.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 345677777888888888888888888876433222 3566777777888888888888888877754 3345566666
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 036287 158 INMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGG 231 (488)
Q Consensus 158 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 231 (488)
..+|...|+...+..-++... ..+++|++.+++.... .|+. +..++.-+...|
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~-----------------~~~~~A~~~~~~a~~~--~p~~--~~~~~~~~~~~~ 165 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAE-----------------ALFDKAAEYWKQAIRL--APNN--YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHH-----------------HHHHHHHHHHHHHHhh--Cchh--HHHHHHHHHhcC
Confidence 777777776555543332211 1245666777666652 3433 444444444333
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.02 Score=50.50 Aligned_cols=192 Identities=12% Similarity=0.066 Sum_probs=125.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCC---CC--------------------------------ceeeHHHHHHHHHHcC
Q 036287 20 TRLKLVELYGKCGEFKDAMQLFDEMPE---CN--------------------------------DVVASTVMINCYVEHG 64 (488)
Q Consensus 20 ~~~~li~~y~~~g~~~~A~~~~~~m~~---~~--------------------------------~~~~~~~li~~~~~~g 64 (488)
.|+.-+..+.+....++|..-++...+ ++ ...-|++|+..+.-..
T Consensus 71 ~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~~ 150 (366)
T KOG2796|consen 71 LWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLKT 150 (366)
T ss_pred HHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 355566777788888877655443322 11 2344556666555555
Q ss_pred CHHHHHHHHhhcCCC--CHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHH
Q 036287 65 LVENAFEVFSRVKVK--DTV--------CWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALEL 134 (488)
Q Consensus 65 ~~~~A~~~f~~~~~~--~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 134 (488)
-+++-...|+.-..| .+. .-++++..+.-.|++.-.+.++.+.++...+.++.....+.+...+.|+.+.
T Consensus 151 ~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~ 230 (366)
T KOG2796|consen 151 VVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKT 230 (366)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHH
Confidence 555555555543322 222 3456777777788888888888888887666677777788888888888888
Q ss_pred HHHHHHHHHHcC-----CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHH
Q 036287 135 GRWIHSYMGKHR-----IDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFR 206 (488)
Q Consensus 135 a~~~~~~~~~~g-----~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 206 (488)
|...++...+.. ++....+.-.....|.-.+++..|...|++++. .|++.-|.-.-+..-.|+..+|++.++
T Consensus 231 a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e 310 (366)
T KOG2796|consen 231 AEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLE 310 (366)
T ss_pred HHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHH
Confidence 888888776543 233333333444556667788888888877765 455666655555556788888888888
Q ss_pred HHHHc
Q 036287 207 EMINQ 211 (488)
Q Consensus 207 ~m~~~ 211 (488)
.|.+.
T Consensus 311 ~~~~~ 315 (366)
T KOG2796|consen 311 AMVQQ 315 (366)
T ss_pred HHhcc
Confidence 88874
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00026 Score=49.34 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=44.8
Q ss_pred HHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 291 LLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 291 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
+...+...|++++|...++++++..|.++..+..++.++...|++++|...++++.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345667778888888888888888888888888888888888888888888887765
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.016 Score=56.28 Aligned_cols=172 Identities=13% Similarity=0.129 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCC-cHhHHHHHHHHHHhcCCHHHHHHHH
Q 036287 97 MARALDLFREMQRD-NVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDL-NHIVGGALINMYSRCGDIDKALQVF 174 (488)
Q Consensus 97 ~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~ 174 (488)
.+..-..+++++.. .+.| ..+|...++...+..-++.|+.+|..+.+.+..+ ++.+.++++.-|+ .++..-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 34444455554432 1222 2445556666666666677777777776666555 6666666666655 45666666666
Q ss_pred Hhccc--CCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHhcccccC-
Q 036287 175 EEMKE--RDV-TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTK--VTFVGVLNACSHGGLVDLGFEIFQSMTRDYG- 248 (488)
Q Consensus 175 ~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~- 248 (488)
+--.. +|. .--+..++-+...++-..|..+|++....++.||. ..|..+|..=+.-|++..+.++-+++...+.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 64332 232 23344555556666666666666666666544443 4566666666666666666666555544332
Q ss_pred -cccChhhHHHHHHHHHhcCChH
Q 036287 249 -IEPQIEHYGCIVDLLSRVGRPE 270 (488)
Q Consensus 249 -~~p~~~~~~~li~~~~~~g~~~ 270 (488)
..+...+-..+++.|.-.+...
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred hhcCCCChHHHHHHHHhhccccc
Confidence 2333334444555555444433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0013 Score=56.20 Aligned_cols=82 Identities=13% Similarity=0.061 Sum_probs=62.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHH
Q 036287 253 IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSN 327 (488)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 327 (488)
...+..+...|...|++++|...|++. ...|+ ...|..+...+...|+++.|...++++++..|.+...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 345666777777788888888877766 22222 4577788888888899999999999999888888888888888
Q ss_pred HHhcCCC
Q 036287 328 AYASSGK 334 (488)
Q Consensus 328 ~~~~~g~ 334 (488)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8877776
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0014 Score=55.83 Aligned_cols=94 Identities=11% Similarity=-0.064 Sum_probs=75.2
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHH
Q 036287 252 QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLS 326 (488)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 326 (488)
....|..+...+...|++++|...|++. ...|+ ..+|..+...+...|++++|...++++++..|....++..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3556677777888889999999988877 33332 357888889999999999999999999999988888888888
Q ss_pred HHHh-------cCCChHHHHHHHHHH
Q 036287 327 NAYA-------SSGKWKEAVQIRAKM 345 (488)
Q Consensus 327 ~~~~-------~~g~~~~a~~~~~~m 345 (488)
.+|. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 788888776666544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0041 Score=58.19 Aligned_cols=153 Identities=18% Similarity=0.143 Sum_probs=109.3
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHhcccccCcccChhh---HHHH------
Q 036287 191 GLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLN--ACSHGGLVDLGFEIFQSMTRDYGIEPQIEH---YGCI------ 259 (488)
Q Consensus 191 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~~~l------ 259 (488)
.+...|++++|.+.--..++. .++. .+...++ ++-..++.+.|...|++.. ...|+-.. ...+
T Consensus 178 cl~~~~~~~~a~~ea~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhcccchhHHHHHHHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHH
Confidence 456778888888776666653 2221 1222222 3345677888888888776 33454221 1111
Q ss_pred ----HHHHHhcCChHHHHHHHHhC-CCC-----CCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 036287 260 ----VDLLSRVGRPEEAYDFITNM-KIA-----PDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAY 329 (488)
Q Consensus 260 ----i~~~~~~g~~~~A~~~~~~m-~~~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 329 (488)
.....+.|++.+|.+.+.+. .+. |++..|.....+..+.|+.++|+.-.+++++++|.-...|..-.+++
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 22346789999999999887 444 45666777777788999999999999999999988888888889999
Q ss_pred hcCCChHHHHHHHHHHHhCC
Q 036287 330 ASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 330 ~~~g~~~~a~~~~~~m~~~g 349 (488)
...++|++|.+-++...+..
T Consensus 332 l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999876643
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.017 Score=53.66 Aligned_cols=194 Identities=11% Similarity=0.050 Sum_probs=87.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCchHHHHHHHHHHHH----cCCCC-cHhHH
Q 036287 85 TAMIDGLVRNGEMARALDLFREMQR----DNVRPN-EVTIVCVLSACSQLGALELGRWIHSYMGK----HRIDL-NHIVG 154 (488)
Q Consensus 85 ~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~~~-~~~~~ 154 (488)
......|...|++++|.+.|.+... .+-+.+ ...|......+. ..+++.|...+....+ .|-.. -..++
T Consensus 39 ~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~ 117 (282)
T PF14938_consen 39 EKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAIECYEKAIEIYREAGRFSQAAKCL 117 (282)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3455566667777777776665532 111111 122333333332 2366666655555432 22110 12234
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHhccc----CC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-----CCHH-
Q 036287 155 GALINMYSRC-GDIDKALQVFEEMKE----RD-----VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIR-----PTKV- 218 (488)
Q Consensus 155 ~~li~~y~~~-g~~~~A~~~~~~~~~----~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----p~~~- 218 (488)
..+..+|... |+++.|.+.|++..+ .+ ...+..+...+.+.|++++|+++|++....-.. ++..
T Consensus 118 ~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~ 197 (282)
T PF14938_consen 118 KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKE 197 (282)
T ss_dssp HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 4455566666 666666666665442 11 123445555666667777777777666543221 1111
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhccccc-CcccC--hhhHHHHHHHHHh--cCChHHHHHHHHhC
Q 036287 219 TFVGVLNACSHGGLVDLGFEIFQSMTRDY-GIEPQ--IEHYGCIVDLLSR--VGRPEEAYDFITNM 279 (488)
Q Consensus 219 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~--~~~~~~li~~~~~--~g~~~~A~~~~~~m 279 (488)
.|...+-.+...|++-.|...++...... ++..+ ......|+++|-. ...+.+|..-|+.+
T Consensus 198 ~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 198 YFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 12222223444566666666666654221 12122 2333444555433 23345555555554
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0044 Score=57.44 Aligned_cols=128 Identities=13% Similarity=0.092 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSA-CSQLGALELGRWIHSYMGKHRIDLNHIVGGALINM 160 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 160 (488)
.+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..||+...+. ++.+...|..-++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467777777777777888888888877543 2334444444333 22345666688888887765 45567777777788
Q ss_pred HHhcCCHHHHHHHHHhcccC------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036287 161 YSRCGDIDKALQVFEEMKER------DVTTYNSLIAGLAMHGRSIEAVEMFREMINQ 211 (488)
Q Consensus 161 y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 211 (488)
+.+.|+.+.|+.+|++.... ....|...+.-=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888876641 3347888888777888888888888877773
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0061 Score=61.32 Aligned_cols=64 Identities=19% Similarity=0.156 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 284 DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 284 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
+...|..+.-.....|++++|...++++++++| +..+|..++..|...|+.++|.+.+++....
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345555555555556777777777777777776 3566777777777777777777777666543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.004 Score=50.98 Aligned_cols=89 Identities=12% Similarity=0.035 Sum_probs=40.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 036287 86 AMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCG 165 (488)
Q Consensus 86 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 165 (488)
.+...+.+.|++++|.++|+-+...+ +-+..-|..+..++-..|++++|...|....... +.|+..+..+..+|.+.|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 33344444555555555555444432 1233333344444444455555555555544444 233444444445555555
Q ss_pred CHHHHHHHHHh
Q 036287 166 DIDKALQVFEE 176 (488)
Q Consensus 166 ~~~~A~~~~~~ 176 (488)
+.+.|++.|+.
T Consensus 118 ~~~~A~~aF~~ 128 (157)
T PRK15363 118 NVCYAIKALKA 128 (157)
T ss_pred CHHHHHHHHHH
Confidence 55555555443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0049 Score=59.59 Aligned_cols=121 Identities=15% Similarity=0.087 Sum_probs=93.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcC--CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc----CCHH
Q 036287 110 DNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHR--IDLNHIVGGALINMYSRCGDIDKALQVFEEMKE----RDVT 183 (488)
Q Consensus 110 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~ 183 (488)
.+.+.+...+..+++.+....+++.+..++-...... ...-..+..+++..|.+.|..+.+..+++.=.. +|..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 3456677788888888888888888888877776652 222344556888999999999998888876554 7888
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 036287 184 TYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHG 230 (488)
Q Consensus 184 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 230 (488)
++|.+++.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999998888877777777777666666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0038 Score=47.52 Aligned_cols=81 Identities=11% Similarity=0.080 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------chHHHHHHHHHHHHcCCCCcHhH
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRDNV-RPNEVTIVCVLSACSQLG--------ALELGRWIHSYMGKHRIDLNHIV 153 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 153 (488)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.|+..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445567777788999999999999999999 999999999999887654 24456778899999999999999
Q ss_pred HHHHHHHHHh
Q 036287 154 GGALINMYSR 163 (488)
Q Consensus 154 ~~~li~~y~~ 163 (488)
|+.++....+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9988877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0057 Score=51.95 Aligned_cols=81 Identities=11% Similarity=-0.019 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHH
Q 036287 81 TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRP--NEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALI 158 (488)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 158 (488)
...|..+...+...|++++|+..|++.......| ...++..+...+...|+.++|...+....+.. +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3456667777777777777777777776542222 12356666666677777777777776666542 22233444444
Q ss_pred HHHH
Q 036287 159 NMYS 162 (488)
Q Consensus 159 ~~y~ 162 (488)
..|.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.002 Score=61.95 Aligned_cols=102 Identities=11% Similarity=0.064 Sum_probs=81.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCccc-ChhhHHHHHHHHHhc
Q 036287 188 LIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEP-QIEHYGCIVDLLSRV 266 (488)
Q Consensus 188 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 266 (488)
....+...|++++|++.|++.++.. +.+...+..+..+|...|++++|...++.+.+ +.| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 3456778899999999999999853 33566777788889999999999999999984 345 477888899999999
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 036287 267 GRPEEAYDFITNM-KIAPDHIMLGSLLS 293 (488)
Q Consensus 267 g~~~~A~~~~~~m-~~~p~~~~~~~ll~ 293 (488)
|++++|...|++. .+.|+.......+.
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999987 66666544444443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0087 Score=47.17 Aligned_cols=108 Identities=17% Similarity=0.100 Sum_probs=67.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCC--CcHhHHHHHHHHH
Q 036287 86 AMIDGLVRNGEMARALDLFREMQRDNVRPN--EVTIVCVLSACSQLGALELGRWIHSYMGKHRID--LNHIVGGALINMY 161 (488)
Q Consensus 86 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~y 161 (488)
.+..++-..|+.++|+.+|++....|+..+ ...+..+.+.+...|++++|..+++........ .+..+...+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345567778888888888888888776544 335556677778888888888888877665311 1222333334455
Q ss_pred HhcCCHHHHHHHHHhcccCCHHHHHHHHHHHH
Q 036287 162 SRCGDIDKALQVFEEMKERDVTTYNSLIAGLA 193 (488)
Q Consensus 162 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 193 (488)
...|+.++|...+-....++...|.--|..|+
T Consensus 86 ~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAETLPRYRRAIRFYA 117 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777666555444444444444443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00042 Score=51.18 Aligned_cols=80 Identities=16% Similarity=0.164 Sum_probs=33.7
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 036287 94 NGEMARALDLFREMQRDNVR-PNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQ 172 (488)
Q Consensus 94 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 172 (488)
+|+++.|+.+|+++.+.... |+...+..+..++.+.|++++|..+++. .+.+. .+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35555555555555553211 1222333344455555555555555544 21111 112222233444555555555555
Q ss_pred HHH
Q 036287 173 VFE 175 (488)
Q Consensus 173 ~~~ 175 (488)
+|+
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00083 Score=46.70 Aligned_cols=61 Identities=16% Similarity=0.117 Sum_probs=49.3
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCc
Q 036287 259 IVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADS 319 (488)
Q Consensus 259 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 319 (488)
+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778889999999999888 5556 477888888899999999999999999999988764
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0016 Score=60.71 Aligned_cols=257 Identities=15% Similarity=0.082 Sum_probs=151.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCchHHHHHHHHHHH--H--cCCC-CcHhHHHHHHHH
Q 036287 90 GLVRNGEMARALDLFREMQRDNVRPNE----VTIVCVLSACSQLGALELGRWIHSYMG--K--HRID-LNHIVGGALINM 160 (488)
Q Consensus 90 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~--~--~g~~-~~~~~~~~li~~ 160 (488)
-+++.|+......+|+..++.|. -|- ..|..+.++|.-++++++|.++|..=+ . .|-. -.......|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 35677777777777777777662 233 334455566667777777777664321 1 0100 011112223444
Q ss_pred HHhcCCHHHHHHHHHhcc-------cC--CHHHHHHHHHHHHhcCC--------------------hhHHHHHHHHHHH-
Q 036287 161 YSRCGDIDKALQVFEEMK-------ER--DVTTYNSLIAGLAMHGR--------------------SIEAVEMFREMIN- 210 (488)
Q Consensus 161 y~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m~~- 210 (488)
+--.|.+++|.-.-.+-. ++ ...++..+...|...|+ ++.|.+.|.+=.+
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 444566666654322211 10 12234445566655542 1223333332111
Q ss_pred ---cCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHhc---ccccCccc-ChhhHHHHHHHHHhcCChHHHHHHHHhC---
Q 036287 211 ---QGI-RPTKVTFVGVLNACSHGGLVDLGFEIFQSM---TRDYGIEP-QIEHYGCIVDLLSRVGRPEEAYDFITNM--- 279 (488)
Q Consensus 211 ---~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~---~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--- 279 (488)
.|- -.....|..|...|.-.|+++.|...++.- .+++|-.. ....++.|..++.-.|+++.|.+.++..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 110 011234555555566678899998776542 22344333 2467788889999999999999988764
Q ss_pred ----CC-CCCHHHHHHHHHHHHHhCChhHHHHHHHHHHh----cC--CCCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 280 ----KI-APDHIMLGSLLSACKIHGKLQLGEQIAKRLLD----CR--SADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 280 ----~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
+- ...+.+..+|.++|....+++.|+.++.+-+. ++ .-...++.+|.++|...|..++|+.+.+.-.+
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 21 12367778899999999999999988877554 22 23456899999999999999999887766543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00036 Score=49.11 Aligned_cols=52 Identities=15% Similarity=0.337 Sum_probs=40.1
Q ss_pred HHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 296 KIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 296 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
...|++++|...++++.+..|.+..++..++.+|.+.|++++|.++++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567788888888888888888888888888888888888888888776654
|
... |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.002 Score=57.82 Aligned_cols=87 Identities=17% Similarity=0.176 Sum_probs=47.3
Q ss_pred cCCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHH
Q 036287 230 GGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQ 306 (488)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~ 306 (488)
.+++++|+..|...+ .+.|+ ...|..=..+|.+.|.++.|++-.+.. .+.|. ...|..|..+|...|++++|++
T Consensus 94 ~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred hhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 344444444444444 22332 333333444555555555555544443 44444 4566666666666677777777
Q ss_pred HHHHHHhcCCCCc
Q 036287 307 IAKRLLDCRSADS 319 (488)
Q Consensus 307 ~~~~~~~~~p~~~ 319 (488)
.|++.++++|.+.
T Consensus 171 aykKaLeldP~Ne 183 (304)
T KOG0553|consen 171 AYKKALELDPDNE 183 (304)
T ss_pred HHHhhhccCCCcH
Confidence 7777777777665
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.31 Score=50.54 Aligned_cols=322 Identities=14% Similarity=0.196 Sum_probs=178.5
Q ss_pred HhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 036287 29 GKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK--VKDTVCWTAMIDGLVRNGEMARALDLF 104 (488)
Q Consensus 29 ~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~ 104 (488)
.+.|+.++|..+++.... .+|..+...+-.+|...|+.++|..++++.. .|+......+..+|++-+.+.+-.+.-
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa 133 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAA 133 (932)
T ss_pred HHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999988877654 3367788888899999999999999999876 345455556667788887776655444
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcC----------chHHHHHHHHHHHHcC-CCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 036287 105 REMQRDNVRPNEVTIVCVLSACSQLG----------ALELGRWIHSYMGKHR-IDLNHIVGGALINMYSRCGDIDKALQV 173 (488)
Q Consensus 105 ~~m~~~g~~p~~~t~~~ll~~~~~~~----------~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~ 173 (488)
-+|.+. .+-+...|-++++...+.- -+..|....+.+++.+ .-.+..=.-.-.......|++++|..+
T Consensus 134 ~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~ 212 (932)
T KOG2053|consen 134 LQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEF 212 (932)
T ss_pred HHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHH
Confidence 444442 4456666767776654432 1234555566655543 111111111112334557778888887
Q ss_pred HHh-----cccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-------------------CCCH------------
Q 036287 174 FEE-----MKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGI-------------------RPTK------------ 217 (488)
Q Consensus 174 ~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-------------------~p~~------------ 217 (488)
+.. ...-+...-+--+..+...+++.+..++-.++...|. .|-.
T Consensus 213 l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~ 292 (932)
T KOG2053|consen 213 LAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDEC 292 (932)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHH
Confidence 732 1122333333334444444444444444444444321 1100
Q ss_pred -------------HHHHHHHHHHh---ccCCHHHHHHHHHhcccccCccc----ChhhH---------HHHHHHHHhc--
Q 036287 218 -------------VTFVGVLNACS---HGGLVDLGFEIFQSMTRDYGIEP----QIEHY---------GCIVDLLSRV-- 266 (488)
Q Consensus 218 -------------~t~~~ll~a~~---~~g~~~~a~~~~~~~~~~~~~~p----~~~~~---------~~li~~~~~~-- 266 (488)
.+|.+-+.+.. .-|+.+++...|-+ .+|-.| |..+| ..+++.+...
T Consensus 293 ~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~---kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~ 369 (932)
T KOG2053|consen 293 IEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFK---KFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADD 369 (932)
T ss_pred HHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHH---HhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCC
Confidence 11111122211 12444444333221 112222 11111 2233333222
Q ss_pred ----------------------CChH-----HHHHHHHhC------C------CCCC---------HHHHHHHHHHHHHh
Q 036287 267 ----------------------GRPE-----EAYDFITNM------K------IAPD---------HIMLGSLLSACKIH 298 (488)
Q Consensus 267 ----------------------g~~~-----~A~~~~~~m------~------~~p~---------~~~~~~ll~~~~~~ 298 (488)
|.++ .-..++++. + .-|+ .-+.+.|+..|.+.
T Consensus 370 ~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rkt 449 (932)
T KOG2053|consen 370 DSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKT 449 (932)
T ss_pred cchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhc
Confidence 2111 111111111 1 1222 12345677788888
Q ss_pred CChh---HHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCCccCC
Q 036287 299 GKLQ---LGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEP 354 (488)
Q Consensus 299 g~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 354 (488)
++.. +|+-+++..+...|.|..+-..|+.+|.-.|-+..|.++++.|.-+.|+.+.
T Consensus 450 nd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 450 NDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred CcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhcc
Confidence 7754 6777778888888999988899999999999999999999999888777553
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0011 Score=47.38 Aligned_cols=56 Identities=13% Similarity=0.174 Sum_probs=48.3
Q ss_pred HHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 293 SACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 293 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
..+...++++.|.++++++++.+|.++..+...+.+|...|++++|.+.++...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46778888999999999999999988888888999999999999999988888754
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0043 Score=51.05 Aligned_cols=89 Identities=15% Similarity=0.060 Sum_probs=76.5
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChH
Q 036287 259 IVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWK 336 (488)
Q Consensus 259 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 336 (488)
..--+-..|++++|..+|+-+ -..| |..-|..|...+...++++.|...+..+..++++|+..+.....+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 334455789999999999887 2222 56678888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 036287 337 EAVQIRAKMKE 347 (488)
Q Consensus 337 ~a~~~~~~m~~ 347 (488)
.|...|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998766
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.034 Score=50.23 Aligned_cols=56 Identities=11% Similarity=0.060 Sum_probs=34.9
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcCC--CC-HH---HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036287 55 VMINCYVEHGLVENAFEVFSRVKV--KD-TV---CWTAMIDGLVRNGEMARALDLFREMQRD 110 (488)
Q Consensus 55 ~li~~~~~~g~~~~A~~~f~~~~~--~~-~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~ 110 (488)
.....+.+.|++++|.+.|+.+.. |+ .. +.-.++.+|.+.+++++|+..|++..+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 445555667777777777777652 21 11 1234556677777777777777777764
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0036 Score=56.27 Aligned_cols=99 Identities=24% Similarity=0.272 Sum_probs=80.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhcC
Q 036287 190 AGLAMHGRSIEAVEMFREMINQGIRP-TKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVG 267 (488)
Q Consensus 190 ~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 267 (488)
.-+.+.+++++|+..|.+.++. .| |.+-|..=..+|++.|..+.|.+-.+..+ .+.|. ...|..|..+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 3466789999999999999984 55 55556666788999999999998888776 45665 689999999999999
Q ss_pred ChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 036287 268 RPEEAYDFITNM-KIAPDHIMLGSLLS 293 (488)
Q Consensus 268 ~~~~A~~~~~~m-~~~p~~~~~~~ll~ 293 (488)
++++|++.|++. .+.|+-.+|-.=|.
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 999999999987 88898777654443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.019 Score=57.81 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=24.1
Q ss_pred ccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC
Q 036287 229 HGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM 279 (488)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 279 (488)
..|++++|...++++.+ +.|+...|..+...+...|+.++|.+.+++.
T Consensus 432 ~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 432 VKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred hcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555555555555442 2344445555555555555555555555443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0081 Score=58.13 Aligned_cols=122 Identities=11% Similarity=0.085 Sum_probs=92.1
Q ss_pred cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhccccc-CcccChhhHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHH
Q 036287 211 QGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDY-GIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM---KIAPDHI 286 (488)
Q Consensus 211 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~ 286 (488)
.+.+.+...+..+++.+....+++.+..++.+....- ....-..+..++|..|...|..++++++++.= |+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 3456677788888888888888888888887776431 11122344458899999999999999988765 8889999
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhcC-CCCchhHHHHHHHHhcC
Q 036287 287 MLGSLLSACKIHGKLQLGEQIAKRLLDCR-SADSGTYVLLSNAYASS 332 (488)
Q Consensus 287 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 332 (488)
+++.|+..+.+.|++..|.+++..|...+ ..++.++..-+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999988888876644 56667777666666555
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.061 Score=44.98 Aligned_cols=97 Identities=16% Similarity=0.071 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CCHHHHHHH
Q 036287 114 PNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE-----RDVTTYNSL 188 (488)
Q Consensus 114 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~l 188 (488)
|+...-..+..+....|+..+|...|++....-+..|..+...+.++....++...|...++.+-+ ++..+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 333333344444444444444444444444333333444444444444444444444444443322 111222233
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 036287 189 IAGLAMHGRSIEAVEMFREMIN 210 (488)
Q Consensus 189 i~~~~~~g~~~~A~~l~~~m~~ 210 (488)
...|...|++.+|...|+....
T Consensus 167 aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHH
Confidence 3344444444444444444443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.029 Score=55.54 Aligned_cols=226 Identities=16% Similarity=0.166 Sum_probs=126.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCH
Q 036287 18 RSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEM 97 (488)
Q Consensus 18 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 97 (488)
...+.+-+.-|...|.+++|.++----. ...-|..|..--...-+++-|++.+.+.. .-.+
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgV---v~~DW~~LA~~ALeAL~f~~ARkAY~rVR----------------dl~~ 616 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGV---TDTDWRELAMEALEALDFETARKAYIRVR----------------DLRY 616 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccce---ecchHHHHHHHHHhhhhhHHHHHHHHHHh----------------ccHH
Confidence 3344444555666777777665411100 12235555444333444444444443322 2234
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036287 98 ARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEM 177 (488)
Q Consensus 98 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 177 (488)
-+.+.-+++|++.|-.|+.... ...|+-.|.+.+|.++|.+ .|.+ |..+.+|.....+|.|.++...-
T Consensus 617 L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~g 684 (1081)
T KOG1538|consen 617 LELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGSG 684 (1081)
T ss_pred HHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhcC
Confidence 4455567888888888887654 3456677888888888764 3432 34567777777777777776543
Q ss_pred cc-------CCHHHH-------HHHHHHHHhcCChhHHHHHHHH------HHHcCC---CCCHHHHHHHHHHHhccCCHH
Q 036287 178 KE-------RDVTTY-------NSLIAGLAMHGRSIEAVEMFRE------MINQGI---RPTKVTFVGVLNACSHGGLVD 234 (488)
Q Consensus 178 ~~-------~~~~~~-------~~li~~~~~~g~~~~A~~l~~~------m~~~g~---~p~~~t~~~ll~a~~~~g~~~ 234 (488)
.. +-...| .+....+...|+.++|..+.-+ +.+-+- ..+..+...+...+-+...+.
T Consensus 685 ~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~g 764 (1081)
T KOG1538|consen 685 DPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPG 764 (1081)
T ss_pred ChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccc
Confidence 21 011111 1233344556776666655321 112111 223445555555555667777
Q ss_pred HHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 036287 235 LGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD 284 (488)
Q Consensus 235 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 284 (488)
.|-++|.+|-. ...++++....+++++|..+-++. ...||
T Consensus 765 LAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~d 805 (1081)
T KOG1538|consen 765 LAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDD 805 (1081)
T ss_pred hHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcccccc
Confidence 78888887753 235677888888999998888887 34444
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.032 Score=51.91 Aligned_cols=114 Identities=18% Similarity=0.179 Sum_probs=65.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-CCHHHHHHHHHhcccccCcccC----hhhHHHHHHH
Q 036287 188 LIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHG-GLVDLGFEIFQSMTRDYGIEPQ----IEHYGCIVDL 262 (488)
Q Consensus 188 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~ 262 (488)
.+..|...|++..|-+.+.+ +...|... |++++|.+.|....+-+.-... ...+..+...
T Consensus 100 A~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 34455555555555444443 44556666 7888888888777643222111 3455667778
Q ss_pred HHhcCChHHHHHHHHhCC---C-----CCCHH-HHHHHHHHHHHhCChhHHHHHHHHHHhcCC
Q 036287 263 LSRVGRPEEAYDFITNMK---I-----APDHI-MLGSLLSACKIHGKLQLGEQIAKRLLDCRS 316 (488)
Q Consensus 263 ~~~~g~~~~A~~~~~~m~---~-----~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 316 (488)
+.+.|++++|.++|++.. . +.++. .+-..+-.+...||...|.+.+++....+|
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 888888888888888761 1 11121 122223345566888888888888887765
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0059 Score=55.15 Aligned_cols=102 Identities=17% Similarity=0.129 Sum_probs=86.4
Q ss_pred ccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh---CChhHHHHHHHHHHhcCCCCchhHHH
Q 036287 250 EPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIH---GKLQLGEQIAKRLLDCRSADSGTYVL 324 (488)
Q Consensus 250 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~~ 324 (488)
+-|...|-.|...|.+.|+++.|..-|.+. .+.| |+..+..+..++... ....++..++++++..+|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 456889999999999999999999999887 4444 467777777766544 34578999999999999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhCCCc
Q 036287 325 LSNAYASSGKWKEAVQIRAKMKEAGVQ 351 (488)
Q Consensus 325 l~~~~~~~g~~~~a~~~~~~m~~~g~~ 351 (488)
|...+...|++.+|...++.|.+..-.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999886543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.2 Score=50.35 Aligned_cols=34 Identities=12% Similarity=0.213 Sum_probs=19.7
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccC
Q 036287 147 IDLNHIVGGALINMYSRCGDIDKALQVFEEMKER 180 (488)
Q Consensus 147 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~ 180 (488)
++.+....-.+.+|+.+.|.-++|.+.|-+-..|
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p 881 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLP 881 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHhccCc
Confidence 3445555555666666666666666666554443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0054 Score=46.68 Aligned_cols=81 Identities=15% Similarity=0.211 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccC--------CHHHHHHHHHhcccccCcccChh
Q 036287 184 TYNSLIAGLAMHGRSIEAVEMFREMINQGI-RPTKVTFVGVLNACSHGG--------LVDLGFEIFQSMTRDYGIEPQIE 254 (488)
Q Consensus 184 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~ 254 (488)
+-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+..+.. .+-+.+.+++.|... +++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 334456666667999999999999999998 899999999988766532 244566777777754 7777777
Q ss_pred hHHHHHHHHHh
Q 036287 255 HYGCIVDLLSR 265 (488)
Q Consensus 255 ~~~~li~~~~~ 265 (488)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 77777776654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.25 Score=46.53 Aligned_cols=103 Identities=16% Similarity=0.113 Sum_probs=59.3
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 036287 159 NMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFE 238 (488)
Q Consensus 159 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 238 (488)
.-+...|+...|.++-.+..-||-.-|...+.+|+..+++++-.++-.. +-.++.|-.++.+|...|...+|..
T Consensus 185 ~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~ 258 (319)
T PF04840_consen 185 RKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASK 258 (319)
T ss_pred HHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHH
Confidence 3344556666666666666666666666666666666666655443221 1123556666666666666666666
Q ss_pred HHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHh
Q 036287 239 IFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITN 278 (488)
Q Consensus 239 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 278 (488)
+...+. +..-+.+|.++|++.+|.+.--+
T Consensus 259 yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 259 YIPKIP-----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 655522 13345666666666666555433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.088 Score=50.04 Aligned_cols=161 Identities=16% Similarity=0.151 Sum_probs=106.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccC-------CHHHHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036287 156 ALINMYSRCGDIDKALQVFEEMKER-------DVTTYNSLIAGLAM---HGRSIEAVEMFREMINQGIRPTKVTFVGVLN 225 (488)
Q Consensus 156 ~li~~y~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 225 (488)
.|+-.|....+++...++++.+... ....--...-++.+ .|+.++|++++..+......++..|+..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555688889999999999888763 11222234445566 7899999999999776667788888877766
Q ss_pred HHhc---------cCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHH----HHHH---HhC-------CCC
Q 036287 226 ACSH---------GGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEA----YDFI---TNM-------KIA 282 (488)
Q Consensus 226 a~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A----~~~~---~~m-------~~~ 282 (488)
.|-. ....++|...|.+.- .+.|+..+--.++..+...|...+. .++- ..+ .-.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5532 234677777777654 4456654443444445445542222 2222 111 122
Q ss_pred CCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCc
Q 036287 283 PDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADS 319 (488)
Q Consensus 283 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 319 (488)
.|-.-+.+++.++.-.|+.+.|.+.++++.++.|+.-
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 3566678899999999999999999999999887663
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.073 Score=48.11 Aligned_cols=174 Identities=13% Similarity=0.037 Sum_probs=104.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccc--CCH-HH---HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 036287 156 ALINMYSRCGDIDKALQVFEEMKE--RDV-TT---YNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSH 229 (488)
Q Consensus 156 ~li~~y~~~g~~~~A~~~~~~~~~--~~~-~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 229 (488)
.....+.+.|++++|.+.|+++.. |+. .. .-.++.+|.+.+++++|...|++..+....-....+...+.+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 344455667888888888888765 221 22 234566778888899999999888875332223334334443331
Q ss_pred --cC---------------C---HHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHH
Q 036287 230 --GG---------------L---VDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLG 289 (488)
Q Consensus 230 --~g---------------~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~ 289 (488)
.+ + ...|...|+.+ ++-|-...-..+|..-+..+...- ..---
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l----------------i~~yP~S~ya~~A~~rl~~l~~~l-a~~e~ 179 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL----------------VRGYPNSQYTTDATKRLVFLKDRL-AKYEL 179 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHH----------------HHHCcCChhHHHHHHHHHHHHHHH-HHHHH
Confidence 10 1 12233333333 333333334445544333331000 01111
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHhcCCCC---chhHHHHHHHHhcCCChHHHHHHHHHHH
Q 036287 290 SLLSACKIHGKLQLGEQIAKRLLDCRSAD---SGTYVLLSNAYASSGKWKEAVQIRAKMK 346 (488)
Q Consensus 290 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 346 (488)
.+..-|.+.|.+..|..-++.+++.-|.. ..+...+..+|...|..++|.++...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 34556888899999999999999876654 4566788899999999999998877654
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0052 Score=52.79 Aligned_cols=97 Identities=14% Similarity=0.303 Sum_probs=70.6
Q ss_pred HHHHHhc--ccCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-------------
Q 036287 171 LQVFEEM--KERDVTTYNSLIAGLAMH-----GRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHG------------- 230 (488)
Q Consensus 171 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 230 (488)
...|+.. ..+|-.+|..++..|.+. |..+-....++.|.+.|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3455555 456777888888877654 66777778888888889999999999988876542
Q ss_pred ---CCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCC
Q 036287 231 ---GLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGR 268 (488)
Q Consensus 231 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 268 (488)
.+.+-|.+++++|.. +|+-||.+++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 234667777888875 4888888888888877766554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.28 Score=46.07 Aligned_cols=300 Identities=18% Similarity=0.175 Sum_probs=193.3
Q ss_pred hHHHHHHHhhCCCCCceeeHHHHHHHHH--HcCCHHHHHHHHhhcC---CCCHHHHHHHHH--HHHHcCCHHHHHHHHHH
Q 036287 34 FKDAMQLFDEMPECNDVVASTVMINCYV--EHGLVENAFEVFSRVK---VKDTVCWTAMID--GLVRNGEMARALDLFRE 106 (488)
Q Consensus 34 ~~~A~~~~~~m~~~~~~~~~~~li~~~~--~~g~~~~A~~~f~~~~---~~~~~~~~~li~--~~~~~g~~~~A~~~~~~ 106 (488)
...+.+.|..-.. -..|.+|-.++. -.||-..|.++-.+-. ..|....-.|+. +-.-.|+++.|.+-|+.
T Consensus 69 P~t~~Ryfr~rKR---drgyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeA 145 (531)
T COG3898 69 PYTARRYFRERKR---DRGYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEA 145 (531)
T ss_pred cHHHHHHHHHHHh---hhHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 3344444444332 234566655553 4577778877765533 345554444444 33457999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CC
Q 036287 107 MQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE-----RD 181 (488)
Q Consensus 107 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~ 181 (488)
|... ...-..-+..+.-..-+.|+.+.|+++-+..-..- +.-...+.+++...+..|+++.|+++++.-.. +|
T Consensus 146 Ml~d-PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~ 223 (531)
T COG3898 146 MLDD-PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKD 223 (531)
T ss_pred HhcC-hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchh
Confidence 9763 11111222333344467899999998888776654 33356778899999999999999999987553 44
Q ss_pred HH--HHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhccCCHHHHHHHHHhcccccCcccChhh
Q 036287 182 VT--TYNSLIAGLAM---HGRSIEAVEMFREMINQGIRPTKVTF-VGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEH 255 (488)
Q Consensus 182 ~~--~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 255 (488)
+. .--.|+.+-+. .-+...|...-.+..+ +.||-+.- .....++.+.|++.++-.+++.+.+. .|.+..
T Consensus 224 ~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~i 298 (531)
T COG3898 224 VAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDI 298 (531)
T ss_pred hHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHH
Confidence 42 22333433221 2345666666555554 66775433 23446788999999999999999854 555554
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 036287 256 YGCIVDLLSRVGRPEEAYDFITNM----KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYA 330 (488)
Q Consensus 256 ~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 330 (488)
+.. -.+.+.|+ .+.+=+++. .++|| ..+-..+..+-...|++..|..-.+.+....|.. ..|..|.+.-.
T Consensus 299 a~l--Y~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIee 373 (531)
T COG3898 299 ALL--YVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEE 373 (531)
T ss_pred HHH--HHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHh
Confidence 332 22344554 333333322 45564 6677778888889999999999999888888866 68888888765
Q ss_pred -cCCChHHHHHHHHHHHhC
Q 036287 331 -SSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 331 -~~g~~~~a~~~~~~m~~~ 348 (488)
..|+-.++...+.+..+.
T Consensus 374 AetGDqg~vR~wlAqav~A 392 (531)
T COG3898 374 AETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hccCchHHHHHHHHHHhcC
Confidence 459999988887766543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0017 Score=45.73 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=52.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhC-ChhHHHHHHHHHHhcCC
Q 036287 252 QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLSACKIHG-KLQLGEQIAKRLLDCRS 316 (488)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 316 (488)
+...|..+...+...|++++|+..|++. ...|+ ...|..+..++...| ++++|...++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456777888888888888888888877 44554 677888888888888 79999999999988876
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0012 Score=46.31 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=28.0
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC
Q 036287 265 RVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD 318 (488)
Q Consensus 265 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 318 (488)
..|++++|+++|+++ ...| +...+..+..+|...|++++|..+++++....|++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 345555555555554 2222 34455555555555555555555555555555554
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.52 Score=47.99 Aligned_cols=315 Identities=13% Similarity=0.098 Sum_probs=179.0
Q ss_pred hCCCCchhhH-----HHHHHHHHhcCChHHHHHHHhhCCCCC--ceeeHHHHHHHHHHcC---CHHHHHHHHhhcCC--C
Q 036287 12 LGLRSNRSTR-----LKLVELYGKCGEFKDAMQLFDEMPECN--DVVASTVMINCYVEHG---LVENAFEVFSRVKV--K 79 (488)
Q Consensus 12 ~g~~~~~~~~-----~~li~~y~~~g~~~~A~~~~~~m~~~~--~~~~~~~li~~~~~~g---~~~~A~~~f~~~~~--~ 79 (488)
.|+..+..-| ..+++-+...+.+..|.++-..+..+- ...++.....-+.+.. +-+-+..+=+++.. .
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~ 505 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT 505 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC
Confidence 3544444433 345667777888888888877766543 1234444455555542 33334444445554 4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcC---------
Q 036287 80 DTVCWTAMIDGLVRNGEMARALDLFREMQRDNV----RPNEVTIVCVLSACSQLGALELGRWIHSYMGKHR--------- 146 (488)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--------- 146 (488)
..++|....+.-.+.|+++-|..+++.=...+. -.+..-+...+.-+...|+.+...+++-.+.+.-
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l 585 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTL 585 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888999888887754222211 0122334556667777788777777666554421
Q ss_pred --CCCcHhHHHHHHH---------HHHhcCCHHHHHHHHH--hcc-----cCCHHHHHHHHHHHHhcCC----------h
Q 036287 147 --IDLNHIVGGALIN---------MYSRCGDIDKALQVFE--EMK-----ERDVTTYNSLIAGLAMHGR----------S 198 (488)
Q Consensus 147 --~~~~~~~~~~li~---------~y~~~g~~~~A~~~~~--~~~-----~~~~~~~~~li~~~~~~g~----------~ 198 (488)
.+....+|.-++. .|-.. +-..+...|. ... +.-........+.+++... .
T Consensus 586 ~~~p~a~~lY~~~~r~~~~~~l~d~y~q~-dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~ 664 (829)
T KOG2280|consen 586 RNQPLALSLYRQFMRHQDRATLYDFYNQD-DNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQ 664 (829)
T ss_pred HhchhhhHHHHHHHHhhchhhhhhhhhcc-cchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 1111122221111 11111 1111111111 000 0111112223333433322 1
Q ss_pred hHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHH
Q 036287 199 IEAVEMFREMIN-QGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFIT 277 (488)
Q Consensus 199 ~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 277 (488)
.+-+.+.+.+.. .|......|.+-.+.-+...|+..+|.++-.+.. -||-..|-.-+.+++..+++++-+++-+
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAk 739 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAK 739 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHh
Confidence 112222233322 2333444556666667777888888888877665 5788888888888999999998888888
Q ss_pred hCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHH
Q 036287 278 NMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRA 343 (488)
Q Consensus 278 ~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 343 (488)
.+. .+.-|.-...+|.+.|+.++|.+++-+.-. +.-...+|.+.|++.+|.++--
T Consensus 740 skk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 740 SKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred ccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHH
Confidence 763 245566788889999999998887765521 1256778888899888887643
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.15 Score=42.82 Aligned_cols=132 Identities=14% Similarity=0.087 Sum_probs=93.2
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCc-ccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHH
Q 036287 213 IRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGI-EPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP---DHIM 287 (488)
Q Consensus 213 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~ 287 (488)
..|+...-..|..+....|+..+|...|.+... |+ .-|....-.+..+....+++.+|...++++ ...| ++.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 456666666777788888888888888887774 43 445666667777777788888888888776 2223 2344
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 288 LGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 288 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
.-.+...+...|....|+..|+.++..-|.- ..-......+++.|+.+++..-+..+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 5556778888899999999999998876532 4444555677888887777665555443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.01 Score=54.15 Aligned_cols=95 Identities=14% Similarity=0.089 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC---chhHHHH
Q 036287 254 EHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD---SGTYVLL 325 (488)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 325 (488)
..|..-+..+.+.|++++|...|+.+ ...|+ ...+..+..++...|+++.|...|+.+++..|.+ +.++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 44555565556678888888888777 33343 2456667788888888999998888888876654 4455566
Q ss_pred HHHHhcCCChHHHHHHHHHHHhC
Q 036287 326 SNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 326 ~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
+.+|...|++++|.++++.+.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77788888899999888887653
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0039 Score=51.56 Aligned_cols=69 Identities=26% Similarity=0.370 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHH-----hCCCccCC
Q 036287 286 IMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMK-----EAGVQKEP 354 (488)
Q Consensus 286 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~ 354 (488)
.....++..+...|+++.|...++.++..+|.+...|..++.+|...|+..+|.++|+.+. +.|+.|.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 3456677778899999999999999999999999999999999999999999999999874 34776644
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.24 Score=49.82 Aligned_cols=187 Identities=12% Similarity=0.092 Sum_probs=103.1
Q ss_pred CHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCC--------HHHHHHHHHHHHhcCchHHH
Q 036287 65 LVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQR-DNVRPN--------EVTIVCVLSACSQLGALELG 135 (488)
Q Consensus 65 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~--------~~t~~~ll~~~~~~~~~~~a 135 (488)
.+++|.+..+. .|.+..|..|...-.+.-.++-|...|-+... .|++.- ...-..-++ +--|.+++|
T Consensus 678 gledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feea 753 (1189)
T KOG2041|consen 678 GLEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEA 753 (1189)
T ss_pred chHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHh
Confidence 35555555554 44567888888777777777777777765533 232210 001111112 234788888
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccC--C---HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036287 136 RWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER--D---VTTYNSLIAGLAMHGRSIEAVEMFREMIN 210 (488)
Q Consensus 136 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 210 (488)
++++-.+-++. ..+.++.+.|++-...++++.-... | ..+|+.+...++....+++|.+.|..-..
T Consensus 754 ek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 754 EKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred hhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88887776553 3467778888888777777653321 1 24677777777777777777766654321
Q ss_pred cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC
Q 036287 211 QGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM 279 (488)
Q Consensus 211 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 279 (488)
. ...+.++.+..++++-+.+-..+.+ +....-.+.+++.+.|.-++|.+.+-+-
T Consensus 825 ~---------e~~~ecly~le~f~~LE~la~~Lpe------~s~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 825 T---------ENQIECLYRLELFGELEVLARTLPE------DSELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred h---------HhHHHHHHHHHhhhhHHHHHHhcCc------ccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence 0 1133444444444444444333322 2333444555555555555555555443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.025 Score=44.57 Aligned_cols=86 Identities=20% Similarity=0.160 Sum_probs=50.9
Q ss_pred HHHHHhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC---CchhHHHHHHHHhc
Q 036287 260 VDLLSRVGRPEEAYDFITNM---KIAPD--HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSA---DSGTYVLLSNAYAS 331 (488)
Q Consensus 260 i~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 331 (488)
..++-..|+.++|+.+|++. +.... ...+-.+.+.+...|++++|..++++.....|. +......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 34455566666666666654 22221 234445666667777777777777777665555 44444555566667
Q ss_pred CCChHHHHHHHHHH
Q 036287 332 SGKWKEAVQIRAKM 345 (488)
Q Consensus 332 ~g~~~~a~~~~~~m 345 (488)
.|++++|.+.+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 77777777665443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.018 Score=49.58 Aligned_cols=96 Identities=16% Similarity=0.191 Sum_probs=63.1
Q ss_pred HHHHhhc--CCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-------------
Q 036287 70 FEVFSRV--KVKDTVCWTAMIDGLVRN-----GEMARALDLFREMQRDNVRPNEVTIVCVLSACSQL------------- 129 (488)
Q Consensus 70 ~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~------------- 129 (488)
...|++. ..+|-.+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.||..+-+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445555 456777777777777654 55555666777788888888888888888765431
Q ss_pred ---CchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 036287 130 ---GALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCG 165 (488)
Q Consensus 130 ---~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 165 (488)
.+-+-|.+++++|...|+-||..++..|++.+++.+
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 123456666777777777777777766666665444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0011 Score=39.02 Aligned_cols=33 Identities=24% Similarity=0.499 Sum_probs=30.4
Q ss_pred HHHHHhcCCCCchhHHHHHHHHhcCCChHHHHH
Q 036287 308 AKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQ 340 (488)
Q Consensus 308 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 340 (488)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678899999999999999999999999999863
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.093 Score=46.06 Aligned_cols=53 Identities=11% Similarity=0.182 Sum_probs=27.9
Q ss_pred HHHHHcCCHHHHHHHHhhcCC--C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036287 58 NCYVEHGLVENAFEVFSRVKV--K----DTVCWTAMIDGLVRNGEMARALDLFREMQRD 110 (488)
Q Consensus 58 ~~~~~~g~~~~A~~~f~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 110 (488)
..+...|++++|.+.|+.+.. | -..+.-.++.++.+.|++++|...|+++.+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334455556666555555541 1 1224445566666666666666666666553
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.011 Score=56.85 Aligned_cols=62 Identities=11% Similarity=0.012 Sum_probs=40.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHhCChhHHHHHHHHHHhc
Q 036287 253 IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPDH----IMLGSLLSACKIHGKLQLGEQIAKRLLDC 314 (488)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 314 (488)
...++.+..+|.+.|++++|+..|++. .+.|+. ..|..+..+|...|+.++|...++++++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455666666667777777777776664 555552 34666666667777777777777777665
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0048 Score=38.92 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHH
Q 036287 286 IMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSN 327 (488)
Q Consensus 286 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 327 (488)
.+|..+..++...|++++|+++++++++..|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788899999999999999999999999999888777653
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.22 Score=44.14 Aligned_cols=230 Identities=13% Similarity=0.048 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCc-hH-HHHHHHHHHHHc-CCCCcHhHHHH
Q 036287 81 TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSAC-SQLGA-LE-LGRWIHSYMGKH-RIDLNHIVGGA 156 (488)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~~~-~~-~a~~~~~~~~~~-g~~~~~~~~~~ 156 (488)
...|+.-+..+++....++|..-+..+...+ .||- -|...=..| .+.|. .. ..+.+|..+... |. -++.
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl-~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgn-----pqes 141 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDL-YYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGN-----PQES 141 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCC-Ccce-eeeeccccCCCCcCccccHHHHHHHHHHHHhcCC-----cHHH
Confidence 4467777778888888888876666554432 1221 010000000 11222 11 122334444332 22 1456
Q ss_pred HHHHHHhcCCHHHHHHHHHhccc--CCH--------HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036287 157 LINMYSRCGDIDKALQVFEEMKE--RDV--------TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNA 226 (488)
Q Consensus 157 li~~y~~~g~~~~A~~~~~~~~~--~~~--------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 226 (488)
|...|.-...+++-...|+.-.. ..+ ..-+.++..+.-.|.+.-.+.++.+..+...+.+......|.+.
T Consensus 142 LdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~ 221 (366)
T KOG2796|consen 142 LDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRI 221 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 66666655555555555544322 122 23456666677777888888888888887666677777788888
Q ss_pred HhccCCHHHHHHHHHhcccccCcccChhhHH-----HHHHHHHhcCChHHHHHHHHhCCCC-C-CHHHHHHHHHHHHHhC
Q 036287 227 CSHGGLVDLGFEIFQSMTRDYGIEPQIEHYG-----CIVDLLSRVGRPEEAYDFITNMKIA-P-DHIMLGSLLSACKIHG 299 (488)
Q Consensus 227 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~ll~~~~~~g 299 (488)
-.+.|+.+.|..+|+...+. .-..+....+ .....|.-++++.+|...+.+.... | |+...|.-.-...-.|
T Consensus 222 ~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg 300 (366)
T KOG2796|consen 222 SMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLG 300 (366)
T ss_pred HHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHH
Confidence 88889999998888877643 2222222222 3333455566777777777666322 2 2333333222333456
Q ss_pred ChhHHHHHHHHHHhcCCCC
Q 036287 300 KLQLGEQIAKRLLDCRSAD 318 (488)
Q Consensus 300 ~~~~a~~~~~~~~~~~p~~ 318 (488)
+...|.+..+.+.+..|..
T Consensus 301 ~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 301 KLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHHhccCCcc
Confidence 6777777777777766543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.66 Score=44.02 Aligned_cols=250 Identities=11% Similarity=-0.019 Sum_probs=132.4
Q ss_pred HHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHH
Q 036287 26 ELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEMARA 100 (488)
Q Consensus 26 ~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A 100 (488)
..+-+...+.+|+..+....+ ++++.-|..-...+...|++++|.--.++-. ........-.-.++...++..+|
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHH
Confidence 344455556666666554433 3345556666666677777777665443322 11111111122222222222222
Q ss_pred HHHH---------------HHHHHCC-CCCCHHHHHHHHH-HHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 036287 101 LDLF---------------REMQRDN-VRPNEVTIVCVLS-ACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSR 163 (488)
Q Consensus 101 ~~~~---------------~~m~~~g-~~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 163 (488)
.+.| +...... -+|.-.++..+-. .+...++.+.|.++-..+++.. ..+....-.-..++--
T Consensus 137 ~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy 215 (486)
T KOG0550|consen 137 EEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYY 215 (486)
T ss_pred HHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhccccccc
Confidence 2222 2111111 1233344444432 3466778888888777776654 1122111111123334
Q ss_pred cCCHHHHHHHHHhcccCCHH---------------HHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCCHHHHHHHHH
Q 036287 164 CGDIDKALQVFEEMKERDVT---------------TYNSLIAGLAMHGRSIEAVEMFREMINQ---GIRPTKVTFVGVLN 225 (488)
Q Consensus 164 ~g~~~~A~~~~~~~~~~~~~---------------~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~ 225 (488)
.++.+.|...|++...-|+. .|..-.+-..+.|++.+|.+.|.+.+.. ++.|+...|.....
T Consensus 216 ~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~ 295 (486)
T KOG0550|consen 216 NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRAL 295 (486)
T ss_pred ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHh
Confidence 57788888888887653221 2333344466788888888888888763 24455555666666
Q ss_pred HHhccCCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC
Q 036287 226 ACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM 279 (488)
Q Consensus 226 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 279 (488)
+..+.|+.++|..-.+... .+.|. +..|..-..++.-.++|++|.+-+++.
T Consensus 296 v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 296 VNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred hhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888887776665 33333 233333344555567788887777765
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.19 Score=49.64 Aligned_cols=130 Identities=16% Similarity=0.205 Sum_probs=70.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 036287 21 RLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARA 100 (488)
Q Consensus 21 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 100 (488)
.+.+++.+-+.|..+.|+++- .--..-.....++|+++.|.++-++.. +...|..|.....++|+++-|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~---------~D~~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lA 366 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFV---------TDPDHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELA 366 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHS---------S-HHHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhc---------CChHHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHH
Confidence 566666666666666666662 222344455566677777766665554 455677777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 036287 101 LDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEE 176 (488)
Q Consensus 101 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 176 (488)
.+.|++... +..++-.|.-.|+.+.-.++.......| . ++....++...|++++..+++.+
T Consensus 367 e~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-~-----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 367 EECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-D-----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-C-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 777665432 3445555555666666666655555554 1 22333333444555555555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.013 Score=41.62 Aligned_cols=62 Identities=15% Similarity=0.147 Sum_probs=49.9
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhH
Q 036287 261 DLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTY 322 (488)
Q Consensus 261 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 322 (488)
..|.+.+++++|.++++.+ ...| +...|......+...|+++.|...++++++..|.++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 5677888899999888887 5555 466777788888999999999999999999988775443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.93 Score=42.73 Aligned_cols=59 Identities=12% Similarity=-0.021 Sum_probs=27.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHH-hCChhHHHHHHHHHHh
Q 036287 255 HYGCIVDLLSRVGRPEEAYDFITNM-KIAPDHIMLGSLLSACKI-HGKLQLGEQIAKRLLD 313 (488)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~ 313 (488)
.-..+..+-...|++..|..--+.. ...|....|..|...-.. .||-.++...+.+.++
T Consensus 331 s~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 331 SSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 3334444444455555444433333 334444555444443322 2555555555555544
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.052 Score=43.23 Aligned_cols=48 Identities=17% Similarity=0.089 Sum_probs=25.7
Q ss_pred CcccChhhHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 036287 248 GIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM----KIAPDHIMLGSLLSAC 295 (488)
Q Consensus 248 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~ 295 (488)
...|+..+..+++.+|+..|++..|.++++.. +++-+..+|..|+.-+
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34455555555555555555555555555544 3433455555555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.055 Score=49.35 Aligned_cols=101 Identities=10% Similarity=0.099 Sum_probs=63.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHH
Q 036287 219 TFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD----HIMLGSLL 292 (488)
Q Consensus 219 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll 292 (488)
.|...+......|++++|...|+.+.+.+.-.+- ...+-.+...|...|++++|...|+.+ ...|+ ...+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444344456677777777766654211110 235556677777777777777777766 22222 44555566
Q ss_pred HHHHHhCChhHHHHHHHHHHhcCCCCc
Q 036287 293 SACKIHGKLQLGEQIAKRLLDCRSADS 319 (488)
Q Consensus 293 ~~~~~~g~~~~a~~~~~~~~~~~p~~~ 319 (488)
..+...|+.+.|...++.+++..|.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 677788889999999998888888764
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.11 Score=47.11 Aligned_cols=98 Identities=11% Similarity=-0.031 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc--C-CHHHHHHHHHhccc---CCHHHHH
Q 036287 113 RPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRC--G-DIDKALQVFEEMKE---RDVTTYN 186 (488)
Q Consensus 113 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~--g-~~~~A~~~~~~~~~---~~~~~~~ 186 (488)
+-|...|..+..+|...|+.+.|..-|....+.. +++...+..+..++... | ...++..+|+++.. .|+.+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 3455566666666666666666666666555543 23333444443332221 1 34456666766654 2445555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc
Q 036287 187 SLIAGLAMHGRSIEAVEMFREMINQ 211 (488)
Q Consensus 187 ~li~~~~~~g~~~~A~~l~~~m~~~ 211 (488)
-+...+...|++.+|...|+.|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 6666777778888888888877775
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.051 Score=43.28 Aligned_cols=54 Identities=13% Similarity=0.247 Sum_probs=47.4
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHh
Q 036287 212 GIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSR 265 (488)
Q Consensus 212 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 265 (488)
...|+..+..+++.+|+..|++..|.++.+...+.|+++.+..+|..|+.-...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999988888899888875443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.5 Score=37.33 Aligned_cols=140 Identities=16% Similarity=0.200 Sum_probs=84.9
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHH
Q 036287 193 AMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEA 272 (488)
Q Consensus 193 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 272 (488)
.-.|..++..++..+...+ .+..-++.++.-....-+-+-..+.++.+-+-+.+.|-.. .-.++..|++.|.
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~N-lKrVi~C~~~~n~---- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGN-LKRVIECYAKRNK---- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT-----
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcc-hHHHHHHHHHhcc----
Confidence 3467778888888887764 2344455555444444455556666666655444433211 1233444444432
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCCc
Q 036287 273 YDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQ 351 (488)
Q Consensus 273 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 351 (488)
+..-....+......|.-+.-.+++..+.+.+.++|....-+.++|.+.|+..++.+++++.-++|++
T Consensus 85 -----------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 -----------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred -----------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33445566778889999999999999998766778889999999999999999999999999999885
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.89 Score=40.07 Aligned_cols=86 Identities=17% Similarity=0.131 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHHhCChhHHHHHHHHHHhc----CCCCchhHH
Q 036287 256 YGCIVDLLSRVGRPEEAYDFITNMK-------IAPDH-IMLGSLLSACKIHGKLQLGEQIAKRLLDC----RSADSGTYV 323 (488)
Q Consensus 256 ~~~li~~~~~~g~~~~A~~~~~~m~-------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~ 323 (488)
|..+...|.+..++++|-..+.+-+ --|+. ..+.+.+-.+.-..++..|++.++.-.+. +|.+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 3444456667777777666555441 11222 22444444555667888888888886553 366777888
Q ss_pred HHHHHHhcCCChHHHHHHH
Q 036287 324 LLSNAYASSGKWKEAVQIR 342 (488)
Q Consensus 324 ~l~~~~~~~g~~~~a~~~~ 342 (488)
.|+.+| ..|+.+++.++.
T Consensus 233 nLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHh-ccCCHHHHHHHH
Confidence 888877 567777776654
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.11 Score=49.10 Aligned_cols=88 Identities=10% Similarity=0.010 Sum_probs=70.0
Q ss_pred HHHHhcCChHHHHHHHHhC--------CCC---------CCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHH
Q 036287 261 DLLSRVGRPEEAYDFITNM--------KIA---------PDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYV 323 (488)
Q Consensus 261 ~~~~~~g~~~~A~~~~~~m--------~~~---------p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 323 (488)
..|.+.|++..|..-|++. +.. .-..++..|...+.+.+++..|+....+.++++|+|..+..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy 295 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY 295 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence 3456666666666665553 111 12455677778889999999999999999999999999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 324 LLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 324 ~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
.-..+|...|+++.|+..|+++.+.
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHh
Confidence 9999999999999999999999763
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.96 Score=39.64 Aligned_cols=65 Identities=12% Similarity=0.019 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcC
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQRDNVR--PNEVTIVCVLSACSQLGALELGRWIHSYMGKHR 146 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 146 (488)
..+-.....+.+.|++.+|++.|+++...-.. --......++.++.+.|+++.|...++..++.-
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 33444556677888888888888888764211 123445556677778888888888888777653
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.022 Score=41.05 Aligned_cols=56 Identities=27% Similarity=0.350 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccc---------CC-HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 036287 153 VGGALINMYSRCGDIDKALQVFEEMKE---------RD-VTTYNSLIAGLAMHGRSIEAVEMFREM 208 (488)
Q Consensus 153 ~~~~li~~y~~~g~~~~A~~~~~~~~~---------~~-~~~~~~li~~~~~~g~~~~A~~l~~~m 208 (488)
+++.+...|...|++++|+..|++..+ ++ ..+++.+...|...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444445555555555544444321 01 233444455555555555555555443
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.08 Score=49.84 Aligned_cols=243 Identities=12% Similarity=0.088 Sum_probs=150.2
Q ss_pred HhHHHHHHHHhCCC---CchhhHHHHHHHHHhcCChHHHHHHHhh-------CCCC-CceeeHHHHHHHHHHcCCHHHHH
Q 036287 2 GREIHGQVLKLGLR---SNRSTRLKLVELYGKCGEFKDAMQLFDE-------MPEC-NDVVASTVMINCYVEHGLVENAF 70 (488)
Q Consensus 2 ~~~i~~~~~~~g~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~-------m~~~-~~~~~~~~li~~~~~~g~~~~A~ 70 (488)
|..+|...++.|-+ .=..+|..|.++|.-.+++++|.+.... |-.+ +...+...|.+.+--.|.+++|.
T Consensus 36 Gv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~ 115 (639)
T KOG1130|consen 36 GVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEAL 115 (639)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHH
Confidence 56678888888732 1234577778888888899999876321 2111 12344455556666667777776
Q ss_pred HHHhh-cC------CC--CHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHH----HCCCC-CCH
Q 036287 71 EVFSR-VK------VK--DTVCWTAMIDGLVRNGE--------------------MARALDLFREMQ----RDNVR-PNE 116 (488)
Q Consensus 71 ~~f~~-~~------~~--~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~----~~g~~-p~~ 116 (488)
-.-.+ +. .+ ...++..|...|...|+ ++.|.+.|.+=+ +.|-. .-.
T Consensus 116 ~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqG 195 (639)
T KOG1130|consen 116 TCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQG 195 (639)
T ss_pred HHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhc
Confidence 54322 21 11 23355567777766553 123444443211 11100 011
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHH----cCC-CCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc-------cC--CH
Q 036287 117 VTIVCVLSACSQLGALELGRWIHSYMGK----HRI-DLNHIVGGALINMYSRCGDIDKALQVFEEMK-------ER--DV 182 (488)
Q Consensus 117 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~--~~ 182 (488)
..|..+.+.|.-+|+++.|...|+.-+. .|- ......++.|.++|.-.|+++.|.+.|+.-. .+ ..
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 2344455555567789999888876433 231 1234567788999999999999999887643 23 33
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcc
Q 036287 183 TTYNSLIAGLAMHGRSIEAVEMFREMINQ-----GIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMT 244 (488)
Q Consensus 183 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 244 (488)
.+..+|.+.|.-...+++|+.++.+-..- ...-....+.+|..++...|..++|+.+.....
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 56777888888888899999988775431 122345678889999999999999988766554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.28 Score=48.97 Aligned_cols=154 Identities=18% Similarity=0.252 Sum_probs=80.0
Q ss_pred HHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCC---------
Q 036287 8 QVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKV--------- 78 (488)
Q Consensus 8 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--------- 78 (488)
.+.++|-.|+... +...++-.|.+.+|-++|.+--..+ .-+..|.....++.|.++...-..
T Consensus 625 ~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~en------RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RK 695 (1081)
T KOG1538|consen 625 ERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHEN------RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRK 695 (1081)
T ss_pred HHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchh------hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHH
Confidence 3455666666543 3445556778888888876644432 334445445555555555433210
Q ss_pred CCHHHHH-----HHHHHHHHcCCHHHHHHHHHH------HHHCCC---CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 036287 79 KDTVCWT-----AMIDGLVRNGEMARALDLFRE------MQRDNV---RPNEVTIVCVLSACSQLGALELGRWIHSYMGK 144 (488)
Q Consensus 79 ~~~~~~~-----~li~~~~~~g~~~~A~~~~~~------m~~~g~---~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 144 (488)
+-..+++ +....+...|+.++|+.+.-+ +..-+- ..+..+...+..-+.+...+..|.++|..|-.
T Consensus 696 RA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD 775 (1081)
T KOG1538|consen 696 RADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD 775 (1081)
T ss_pred HHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc
Confidence 0011111 223334455666665544311 111111 12334444444445555666677777766543
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc
Q 036287 145 HRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE 179 (488)
Q Consensus 145 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 179 (488)
. ..++++....+++++|..+-++.++
T Consensus 776 ~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 776 L---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred H---------HHHhhheeecccchHhHhhhhhCcc
Confidence 2 2466777777888888877777765
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.017 Score=41.72 Aligned_cols=61 Identities=18% Similarity=0.211 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhc----CCC---CchhHHHHHHHHhcCCChHHHHHHHHHHH
Q 036287 286 IMLGSLLSACKIHGKLQLGEQIAKRLLDC----RSA---DSGTYVLLSNAYASSGKWKEAVQIRAKMK 346 (488)
Q Consensus 286 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 346 (488)
.+++.+...+...|++++|+..+++.++. ++. -..++..++.+|...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666666677777777777777766652 221 13466677777888888888887777654
|
... |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.81 E-value=1.2 Score=39.01 Aligned_cols=192 Identities=20% Similarity=0.208 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccc-----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 036287 152 IVGGALINMYSRCGDIDKALQVFEEMKE-----RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLN- 225 (488)
Q Consensus 152 ~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~- 225 (488)
.........+...+.+..+...+..... .....+......+...+++.++...+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 3444455555555555555555554331 2333444455555555566666666666655322221 11111122
Q ss_pred HHhccCCHHHHHHHHHhcccccCccc----ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHHh
Q 036287 226 ACSHGGLVDLGFEIFQSMTRDYGIEP----QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD--HIMLGSLLSACKIH 298 (488)
Q Consensus 226 a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~ 298 (488)
++...|+++.+...+..... ..| ....+......+...++.++|...+... ...|+ ...+..+...+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 55566666666666666532 222 2233333333455666777777776666 33333 45666666677777
Q ss_pred CChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 299 GKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 299 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
++.+.|...+.......|.....+..+...+...|.++++...+....+
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777766444555555555566667777777666654
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.80 E-value=3.6 Score=47.90 Aligned_cols=317 Identities=11% Similarity=0.062 Sum_probs=175.0
Q ss_pred HHHHHHHhcCChHHHHHHHhhC----CCCCceee-HHHHHHHHHHcCCHHHHHHHHhh-cCCCCHHHHHHHHHHHHHcCC
Q 036287 23 KLVELYGKCGEFKDAMQLFDEM----PECNDVVA-STVMINCYVEHGLVENAFEVFSR-VKVKDTVCWTAMIDGLVRNGE 96 (488)
Q Consensus 23 ~li~~y~~~g~~~~A~~~~~~m----~~~~~~~~-~~~li~~~~~~g~~~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~ 96 (488)
.|..+=.+|+.+..|.-.+++- .+.+.... +-.+...|+..+++|...-+... ...++. ...|...-..|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 4555667899999999999883 22222223 33444488888888887777663 334433 234555667899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHH-HHHHHHhcCCHHHHHHHHH
Q 036287 97 MARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGA-LINMYSRCGDIDKALQVFE 175 (488)
Q Consensus 97 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-li~~y~~~g~~~~A~~~~~ 175 (488)
+..|...|+++.+.+ ++...+++.++..-...+.++...-..+.....- .+...-+++ =+.+--+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999999875 4447788888887777888777766544443332 233333333 2444466777777766655
Q ss_pred hcccCCHHHHHHH-H-HHHHhc--CChhHHHHHHHHHHHcCCCC-C--------HHHHHHHHHHHhccCCHHHHHHHHHh
Q 036287 176 EMKERDVTTYNSL-I-AGLAMH--GRSIEAVEMFREMINQGIRP-T--------KVTFVGVLNACSHGGLVDLGFEIFQS 242 (488)
Q Consensus 176 ~~~~~~~~~~~~l-i-~~~~~~--g~~~~A~~l~~~m~~~g~~p-~--------~~t~~~ll~a~~~~g~~~~a~~~~~~ 242 (488)
..+..+|.+. + ....+. .+.-.-.++.+.+.+.-+.| . ...|..++....-. +.+.-.+....
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~~l~~ 1618 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIEELKK 1618 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHHHhhc
Confidence 5566666655 2 222221 22212223333333221111 0 01122222211110 01111111111
Q ss_pred cccccCcccChhhHHH---HHHHHHhcCChHHHHH-HHHhCCCCCC-----HHHHHHHHHHHHHhCChhHHHHHHHHHHh
Q 036287 243 MTRDYGIEPQIEHYGC---IVDLLSRVGRPEEAYD-FITNMKIAPD-----HIMLGSLLSACKIHGKLQLGEQIAKRLLD 313 (488)
Q Consensus 243 ~~~~~~~~p~~~~~~~---li~~~~~~g~~~~A~~-~~~~m~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 313 (488)
........-+..-|.. ..+.+.+...+=-|.+ .+.....+|+ ..+|-...+.++..|.++.|...+-.+.+
T Consensus 1619 ~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e 1698 (2382)
T KOG0890|consen 1619 VSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKE 1698 (2382)
T ss_pred cCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhh
Confidence 1110011111111211 1222222111111111 1111122332 67899999999999999999999888888
Q ss_pred cCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 036287 314 CRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 314 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 350 (488)
..++ ..+.-.+......|+...|+.++++-.+...
T Consensus 1699 ~r~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1699 SRLP--EIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred cccc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 7744 5788899999999999999999998876544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.70 E-value=1.6 Score=39.75 Aligned_cols=174 Identities=13% Similarity=0.107 Sum_probs=108.9
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccC
Q 036287 169 KALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYG 248 (488)
Q Consensus 169 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 248 (488)
...+.+++...+....--.........|+..+|..+|+...... +-+......+..+|...|+.+.|..++..+-.+
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-- 197 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-- 197 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc--
Confidence 33444444444322222223345667888889999998888752 223445556778888889999999988887642
Q ss_pred cccC-hhhHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC--CCCchhHHH
Q 036287 249 IEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNMKIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCR--SADSGTYVL 324 (488)
Q Consensus 249 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~ 324 (488)
..-+ ......-+..+.+.....+..++-.+..-.| |...-..+...+...|+.+.|...+-.+++.+ -.+...-..
T Consensus 198 ~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ 277 (304)
T COG3118 198 AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKT 277 (304)
T ss_pred chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHH
Confidence 1111 1122334566666666666666666664456 56666677778888888888888777776643 455677777
Q ss_pred HHHHHhcCCChH-HHHHHHHHH
Q 036287 325 LSNAYASSGKWK-EAVQIRAKM 345 (488)
Q Consensus 325 l~~~~~~~g~~~-~a~~~~~~m 345 (488)
|+..+.-.|.-+ .+.+.+++|
T Consensus 278 lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 278 LLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred HHHHHHhcCCCCHHHHHHHHHH
Confidence 888777777433 344444444
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.17 Score=47.89 Aligned_cols=119 Identities=15% Similarity=0.151 Sum_probs=82.5
Q ss_pred HHHHHcCCHHHHHHHHhhcC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 036287 58 NCYVEHGLVENAFEVFSRVK------------------VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTI 119 (488)
Q Consensus 58 ~~~~~~g~~~~A~~~f~~~~------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 119 (488)
+.|.+.|++..|..-|++.. ..-..+++.|..+|.+.+++.+|++.-.+.+..+ ++|.-.+
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 34566666666666665532 1123467888888999999999999999888875 6778888
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHH-HHHHHhcc
Q 036287 120 VCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKA-LQVFEEMK 178 (488)
Q Consensus 120 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A-~~~~~~~~ 178 (488)
.--..++...|+++.|+..|+.+++.. +.|..+-+.|+.+-.+....... .++|..|-
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888899999999999999988875 44555555666555544443332 44555543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.66 E-value=1.5 Score=41.98 Aligned_cols=74 Identities=12% Similarity=0.118 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhcCCC---C----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036287 53 STVMINCYVEHGLVENAFEVFSRVKVK---D----TVCWTAMIDGLVR---NGEMARALDLFREMQRDNVRPNEVTIVCV 122 (488)
Q Consensus 53 ~~~li~~~~~~g~~~~A~~~f~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 122 (488)
-..++-.|....+++...++++.+... + ...--...-++.+ .|+.++|++++..+....-.+++.||..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 334445577777788888887777633 1 1111123334455 67788888888775555556777777776
Q ss_pred HHHH
Q 036287 123 LSAC 126 (488)
Q Consensus 123 l~~~ 126 (488)
.+.|
T Consensus 224 GRIy 227 (374)
T PF13281_consen 224 GRIY 227 (374)
T ss_pred HHHH
Confidence 6655
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.092 Score=43.28 Aligned_cols=71 Identities=13% Similarity=0.117 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHH-----HcCCCCcHhHH
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMG-----KHRIDLNHIVG 154 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-----~~g~~~~~~~~ 154 (488)
+...++..+...|++++|+.+.+++.... |.|...+..++.++...|+...|.++|..+. +.|++|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 45566677778888888888888888764 5577788888888888888888888887764 34777776543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.1 Score=50.44 Aligned_cols=61 Identities=15% Similarity=0.072 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChh----hHHHHHHHHHhcCChHHHHHHHHhC
Q 036287 216 TKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIE----HYGCIVDLLSRVGRPEEAYDFITNM 279 (488)
Q Consensus 216 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m 279 (488)
+...++.+..+|...|++++|...|+... .+.|+.. .|..+..+|...|++++|++.+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rAL---eL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETAL---ELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44556666677777777777777777766 3355532 3666777777777777777776665
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.44 E-value=3.7 Score=42.20 Aligned_cols=109 Identities=16% Similarity=0.104 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHH
Q 036287 184 TYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLL 263 (488)
Q Consensus 184 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 263 (488)
+.+--+.-+...|+..+|.++-++.+ -||...|..=+.+++..+++++-+++-.+... +.-|.-.+..+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks-------PIGy~PFVe~c 754 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS-------PIGYLPFVEAC 754 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-------CCCchhHHHHH
Confidence 34444555666778888877766653 47777777777788888888777776655542 34455567778
Q ss_pred HhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHH
Q 036287 264 SRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAK 309 (488)
Q Consensus 264 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 309 (488)
.+.|+.++|.+.+-+.+-.+ -...+|...|++.+|.+..-
T Consensus 755 ~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HhcccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHH
Confidence 88888888888877764222 34455666677766665543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.26 E-value=1.9 Score=37.70 Aligned_cols=219 Identities=18% Similarity=0.142 Sum_probs=132.5
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHc-CCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 036287 95 GEMARALDLFREMQRDNVR-PNEVTIVCVLSACSQLGALELGRWIHSYMGKH-RIDLNHIVGGALINMYSRCGDIDKALQ 172 (488)
Q Consensus 95 g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~ 172 (488)
+....+...+......... .....+......+...+.+..+...+...... ........+..+...+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4444455555554443211 12345555555566666666666665555542 223344455555666666666777777
Q ss_pred HHHhccc--CC-HHHHHHHHH-HHHhcCChhHHHHHHHHHHHcCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHhcc
Q 036287 173 VFEEMKE--RD-VTTYNSLIA-GLAMHGRSIEAVEMFREMINQGIRP----TKVTFVGVLNACSHGGLVDLGFEIFQSMT 244 (488)
Q Consensus 173 ~~~~~~~--~~-~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 244 (488)
.+..... ++ ......... .+...|+++.|...|.+... ..| ....+......+...++.+.+...+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 7666554 11 122222333 67778888888888888755 222 23333334444566778888888888777
Q ss_pred cccCccc-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC
Q 036287 245 RDYGIEP-QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSA 317 (488)
Q Consensus 245 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 317 (488)
. .... ....+..+...+...++++.|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 195 ~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 K--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred h--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 4 2223 3567777788888888888888888777 44444 445555555555667788999899988888775
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.16 Score=45.55 Aligned_cols=101 Identities=18% Similarity=0.279 Sum_probs=80.3
Q ss_pred HHHHHHHhcc--cCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----------
Q 036287 169 KALQVFEEMK--ERDVTTYNSLIAGLAMH-----GRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGG---------- 231 (488)
Q Consensus 169 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---------- 231 (488)
..++.|.... ++|-.+|-+++..|..+ +..+-....++.|.+.|+.-|..+|..|++.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455666666 67888999999888754 456667778889999999999999999998876542
Q ss_pred ------CHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChH
Q 036287 232 ------LVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPE 270 (488)
Q Consensus 232 ------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 270 (488)
+-+=+..+++.|.. +|+.||-++-..|+.++++.+..-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccH
Confidence 23447888999985 699999999999999999988644
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.62 Score=42.94 Aligned_cols=113 Identities=12% Similarity=0.098 Sum_probs=48.0
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHH----HHHHHhcCChH
Q 036287 195 HGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCI----VDLLSRVGRPE 270 (488)
Q Consensus 195 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~~ 270 (488)
.|+..+|-..++++.+. .+.|...+.-.=.+|...|+.+.-...++++.. ...||...|.-+ .-++..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34444444445444443 333444444444445555555444444444442 223333222222 22223445555
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHH
Q 036287 271 EAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKR 310 (488)
Q Consensus 271 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 310 (488)
+|++.-++. .+.| |...-.++...+...|+..++.+...+
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 555555444 3332 233334444444444555555444433
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.97 E-value=1.6 Score=35.46 Aligned_cols=43 Identities=19% Similarity=0.049 Sum_probs=23.1
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc
Q 036287 121 CVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRC 164 (488)
Q Consensus 121 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 164 (488)
.++..+.+.+.......+++.+.+.+ ..+....+.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 34455555555666666666655554 24455555555555543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.43 Score=39.54 Aligned_cols=87 Identities=13% Similarity=-0.056 Sum_probs=39.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHH
Q 036287 90 GLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDK 169 (488)
Q Consensus 90 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 169 (488)
.+.+.|++++|..+|.-+...+ +-|..-+..+..++-..+++++|...|......+. .|+...--...+|...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence 3445555555555555554432 12233333444444445555555555555443331 122222234455555555555
Q ss_pred HHHHHHhcc
Q 036287 170 ALQVFEEMK 178 (488)
Q Consensus 170 A~~~~~~~~ 178 (488)
|+..|....
T Consensus 124 A~~~f~~a~ 132 (165)
T PRK15331 124 ARQCFELVN 132 (165)
T ss_pred HHHHHHHHH
Confidence 555555443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.43 Score=47.10 Aligned_cols=106 Identities=15% Similarity=0.217 Sum_probs=56.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC
Q 036287 220 FVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHG 299 (488)
Q Consensus 220 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g 299 (488)
...++.-+.+.|..+.|+++...-.. -.+...+.|+++.|.++.++.. +...|..|.......|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLDIALEIAKELD---DPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HHHHHHHCCCCS---THHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHcC
Confidence 44555555566666666654322211 1334456666666666655543 5556666666666666
Q ss_pred ChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 300 KLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 300 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
+++.|++.+++. .-+..|+-.|...|+.+.-.++.+....+|
T Consensus 362 ~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 362 NIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp BHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 666666666654 234555566666666655555555444433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.77 E-value=2.9 Score=37.38 Aligned_cols=177 Identities=14% Similarity=0.076 Sum_probs=92.1
Q ss_pred eeHHHHHHHHHHcCCHHHHHHHHhhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036287 51 VASTVMINCYVEHGLVENAFEVFSRVKVK------DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLS 124 (488)
Q Consensus 51 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 124 (488)
..|-.=+..-.+.|++++|.+.|+.+... ...+--.++-++.+.+++++|+...++..+.-..-...-|..-|.
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 33444444456677888888888777622 223445566677788888888888888776432222233433343
Q ss_pred HHHhc-------CchHHHHH---HHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHH--HHHHHHH
Q 036287 125 ACSQL-------GALELGRW---IHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTY--NSLIAGL 192 (488)
Q Consensus 125 ~~~~~-------~~~~~a~~---~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~--~~li~~~ 192 (488)
+.+.. .+...+.+ -++.+++.- |.+.. ..+|......+. |.... ..+..-|
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry-PnS~Y--------------a~dA~~~i~~~~--d~LA~~Em~IaryY 177 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQRY-PNSRY--------------APDAKARIVKLN--DALAGHEMAIARYY 177 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHHHHHHC-CCCcc--------------hhhHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 33311 11222222 222222211 11111 111111111111 11111 2234567
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHhccc
Q 036287 193 AMHGRSIEAVEMFREMINQGIRPTK---VTFVGVLNACSHGGLVDLGFEIFQSMTR 245 (488)
Q Consensus 193 ~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 245 (488)
.+.|.+..|..-+++|++. .+-+. ..+-.+..+|...|..++|...-.-+..
T Consensus 178 ~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 178 LKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 8888888888888888876 22222 3445566778888888887776665553
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.28 Score=44.03 Aligned_cols=91 Identities=16% Similarity=0.186 Sum_probs=62.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC---CchhHHH
Q 036287 255 HYGCIVDLLSRVGRPEEAYDFITNM-------KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSA---DSGTYVL 324 (488)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~ 324 (488)
.|+.-++.| +.|++.+|.+.|... ...||..-| |..++...|+++.|..+|..+.+..|. -+..+.-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 466555544 556677777777765 233344444 777788888888888888888775543 4456777
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhC
Q 036287 325 LSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 325 l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
|.....+.|+.++|..+++++.++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 777788888888888888877653
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.73 E-value=3.5 Score=38.17 Aligned_cols=96 Identities=9% Similarity=0.059 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC--------CCCCCH-----HHHHHHHHHHHhcCchH---HHHHHHHHHHHcC
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRD--------NVRPNE-----VTIVCVLSACSQLGALE---LGRWIHSYMGKHR 146 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~p~~-----~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~g 146 (488)
.||.-...+.+..+++.|...+++..+. ...|+. .++..++.++...+..+ +|..+.+.+.+..
T Consensus 38 ~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~ 117 (278)
T PF08631_consen 38 CYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY 117 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC
Confidence 3444444444333676666666554331 112222 23334444555444433 3333444442221
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc
Q 036287 147 IDLNHIVGGALINMYSRCGDIDKALQVFEEMKE 179 (488)
Q Consensus 147 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 179 (488)
+..+.++..-+....+.++.+.+.+++.+|..
T Consensus 118 -~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 118 -GNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred -CCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 22233333334444445666666666666553
|
It is also involved in sporulation []. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.62 E-value=4.6 Score=39.04 Aligned_cols=126 Identities=11% Similarity=0.147 Sum_probs=86.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhcccccC-cccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH-HHHHHHHH
Q 036287 219 TFVGVLNACSHGGLVDLGFEIFQSMTRDYG-IEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPDHIM-LGSLLSAC 295 (488)
Q Consensus 219 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~-~~~ll~~~ 295 (488)
.|...+.+..+..-++.|+.+|-++.+. + +.+++..+++++..++ .|+..-|..+|+-- ..-||... -...+.-+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4556677777777788889999888875 5 6678888888888665 56778888888754 33345443 34566666
Q ss_pred HHhCChhHHHHHHHHHHhcCCC--CchhHHHHHHHHhcCCChHHHHHHHHHHH
Q 036287 296 KIHGKLQLGEQIAKRLLDCRSA--DSGTYVLLSNAYASSGKWKEAVQIRAKMK 346 (488)
Q Consensus 296 ~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 346 (488)
..-++-+.|..+|+..++.-.. -...|..++.--..-|+...+..+-+.|.
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 7778888888888866553211 23567777777777777766666555554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.64 Score=45.16 Aligned_cols=115 Identities=13% Similarity=0.120 Sum_probs=75.4
Q ss_pred HHHHHHHHHhcccccCcccC-hhhHHHHHHHHHh---------cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCC
Q 036287 233 VDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSR---------VGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGK 300 (488)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 300 (488)
.+.|..+|.+......+.|+ ...|..+..++.. .....+|.++.++. ...| |+.....+..+....++
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 46677777776643345555 3444444333321 12234555555554 3444 56666666666677777
Q ss_pred hhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 301 LQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 301 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
++.|...|+++..++|+.+.+|........-+|+.++|.+.+++..+
T Consensus 354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888888888888888888888888888888888888888877543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.48 E-value=7 Score=40.52 Aligned_cols=152 Identities=10% Similarity=0.119 Sum_probs=97.7
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCC----ceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 036287 25 VELYGKCGEFKDAMQLFDEMPECN----DVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARA 100 (488)
Q Consensus 25 i~~y~~~g~~~~A~~~~~~m~~~~----~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 100 (488)
++-+.+.+.+++|..+-+...... ....|...|..+...|++++|-...-.|...+..-|.--+..++..++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 556777888999998887765533 2457888899999999999999988888888888888888888777766554
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHH------------------HHHHHHHcCCCCcHhHHHHHHHHHH
Q 036287 101 LDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRW------------------IHSYMGKHRIDLNHIVGGALINMYS 162 (488)
Q Consensus 101 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~------------------~~~~~~~~g~~~~~~~~~~li~~y~ 162 (488)
..++ .......++..|..+|-.+.. .+...-.+ +..++.+. ..+..+...|+..|.
T Consensus 443 a~~l---Pt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La~LYl 516 (846)
T KOG2066|consen 443 APYL---PTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLAHLYL 516 (846)
T ss_pred hccC---CCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHHHHHH
Confidence 3322 111112344556555555544 21111111 11111111 112234445899999
Q ss_pred hcCCHHHHHHHHHhcccCCH
Q 036287 163 RCGDIDKALQVFEEMKERDV 182 (488)
Q Consensus 163 ~~g~~~~A~~~~~~~~~~~~ 182 (488)
..+++++|...+-...++++
T Consensus 517 ~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 517 YDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HccChHHHHHHHHhccChHH
Confidence 99999999999888776543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.42 E-value=5.2 Score=38.78 Aligned_cols=274 Identities=14% Similarity=0.144 Sum_probs=145.7
Q ss_pred HHhcCChHHHHHHHhhCCCCC--c------eeeHHHHHHHHHHcCCHHHHHHHHhhcCCC-CHHHHHHHHH--HHHHcCC
Q 036287 28 YGKCGEFKDAMQLFDEMPECN--D------VVASTVMINCYVEHGLVENAFEVFSRVKVK-DTVCWTAMID--GLVRNGE 96 (488)
Q Consensus 28 y~~~g~~~~A~~~~~~m~~~~--~------~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~li~--~~~~~g~ 96 (488)
+.+.+++.+|.++|.++-+.. + .+.-+.++++|...+ ++..........+. ....|-.|.. .+.+.+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Confidence 457889999999998876532 1 233456677776543 33333333222211 1223444443 3457788
Q ss_pred HHHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCC----CCcHhHHHHHH
Q 036287 97 MARALDLFREMQRD--NVRP------------NEVTIVCVLSACSQLGALELGRWIHSYMGKHRI----DLNHIVGGALI 158 (488)
Q Consensus 97 ~~~A~~~~~~m~~~--g~~p------------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~li 158 (488)
+.+|++.+..-... +..| |-.-=+..+.+....|.+.+|+.++..+...=+ ..+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 99998888766553 2222 112223445667788999999888888766543 47788888877
Q ss_pred HHHHhcCCHHHHHHHHHhccc---CCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--cCC
Q 036287 159 NMYSRCGDIDKALQVFEEMKE---RDV-TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSH--GGL 232 (488)
Q Consensus 159 ~~y~~~g~~~~A~~~~~~~~~---~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~--~g~ 232 (488)
-++++. .|-++.+ -|+ .-|.-||..|.+.=+.-++ ---..+-|....+..++....- ...
T Consensus 175 lmlsrS--------YfLEl~e~~s~dl~pdyYemilfY~kki~~~d~------~~Y~k~~peeeL~s~imqhlfi~p~e~ 240 (549)
T PF07079_consen 175 LMLSRS--------YFLELKESMSSDLYPDYYEMILFYLKKIHAFDQ------RPYEKFIPEEELFSTIMQHLFIVPKER 240 (549)
T ss_pred HHHhHH--------HHHHHHHhcccccChHHHHHHHHHHHHHHHHhh------chHHhhCcHHHHHHHHHHHHHhCCHhh
Confidence 777653 3333321 121 2344455555432111111 0001133433333333332211 111
Q ss_pred HHHHHHHHHhcccccCcccCh-hhHHHHHHHHHhcCChHHHHHHHHhC---CCCC----CHHHHHHHHHHHHHhCChhHH
Q 036287 233 VDLGFEIFQSMTRDYGIEPQI-EHYGCIVDLLSRVGRPEEAYDFITNM---KIAP----DHIMLGSLLSACKIHGKLQLG 304 (488)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p----~~~~~~~ll~~~~~~g~~~~a 304 (488)
..--.+++.... ++-+.|+- -+...|++.+.+ +.+++..+.+.+ .+.+ -..++..++..+.+.++..+|
T Consensus 241 l~~~mq~l~~We-~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a 317 (549)
T PF07079_consen 241 LPPLMQILENWE-NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEA 317 (549)
T ss_pred ccHHHHHHHHHH-hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 111222222222 23455552 333445554444 455555555444 1111 256788888899999999999
Q ss_pred HHHHHHHHhcCCCCc
Q 036287 305 EQIAKRLLDCRSADS 319 (488)
Q Consensus 305 ~~~~~~~~~~~p~~~ 319 (488)
.+.+.-+.-++|...
T Consensus 318 ~q~l~lL~~ldp~~s 332 (549)
T PF07079_consen 318 KQYLALLKILDPRIS 332 (549)
T ss_pred HHHHHHHHhcCCcch
Confidence 999888888887653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.36 E-value=1.8 Score=43.43 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC
Q 036287 21 RLKLVELYGKCGEFKDAMQLFDEMPE 46 (488)
Q Consensus 21 ~~~li~~y~~~g~~~~A~~~~~~m~~ 46 (488)
...+++..+=.|+-+.+.+.+....+
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~ 216 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASK 216 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhc
Confidence 34556666667888888888776555
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.53 Score=42.29 Aligned_cols=97 Identities=11% Similarity=0.086 Sum_probs=70.4
Q ss_pred HHHHhhcC--CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC------------
Q 036287 70 FEVFSRVK--VKDTVCWTAMIDGLVRN-----GEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLG------------ 130 (488)
Q Consensus 70 ~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~------------ 130 (488)
++.|...+ ++|-.+|-+++..+... +..+=....++.|.+-|+.-|..+|..||+.+-+-.
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44566665 66778888888777654 445555667788888899999999999888764422
Q ss_pred ----chHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 036287 131 ----ALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGD 166 (488)
Q Consensus 131 ----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 166 (488)
+-+-+..++++|...|+-||..+-..|++++.+.|-
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 234567778888888888888888888888777664
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.23 E-value=1.3 Score=35.88 Aligned_cols=59 Identities=14% Similarity=0.077 Sum_probs=39.8
Q ss_pred HHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCch
Q 036287 262 LLSRVGRPEEAYDFITNM----KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSG 320 (488)
Q Consensus 262 ~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 320 (488)
...+.|++++|.+.|+.+ |..| ....--.|+.++.+.++++.|...+++.+++.|.++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 344567777777777776 2222 2344555777788888888888888888888776543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.20 E-value=2.6 Score=42.32 Aligned_cols=160 Identities=16% Similarity=0.119 Sum_probs=106.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHhc----cCCHHHHHHHHHhcccccCcccChh
Q 036287 185 YNSLIAGLAMHGRSIEAVEMFREMINQG-IRPTK-----VTFVGVLNACSH----GGLVDLGFEIFQSMTRDYGIEPQIE 254 (488)
Q Consensus 185 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~-----~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~ 254 (488)
...+++...-.|+-+.+++++.+..+.+ +.-.. .+|..++..+.. ....+.+.+++..+.+. -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3445555666788888888888766532 22111 123333333332 45678899999999864 46655
Q ss_pred hHH-HHHHHHHhcCChHHHHHHHHhCC-CCC-----CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHH-H
Q 036287 255 HYG-CIVDLLSRVGRPEEAYDFITNMK-IAP-----DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLL-S 326 (488)
Q Consensus 255 ~~~-~li~~~~~~g~~~~A~~~~~~m~-~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l-~ 326 (488)
.|. .-...+...|++++|++.|++.- .+. ....+--+...+....++++|...+.++.+....+...|.-+ +
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 554 33456777899999999999752 111 233444566667888999999999999999876665565544 4
Q ss_pred HHHhcCCCh-------HHHHHHHHHHHh
Q 036287 327 NAYASSGKW-------KEAVQIRAKMKE 347 (488)
Q Consensus 327 ~~~~~~g~~-------~~a~~~~~~m~~ 347 (488)
-+|...|+. ++|.+++++...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 455677888 788888877644
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.18 E-value=10 Score=41.31 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=19.1
Q ss_pred HHHHHHHHHHcC--CHHHHHHHHHHHHH
Q 036287 84 WTAMIDGLVRNG--EMARALDLFREMQR 109 (488)
Q Consensus 84 ~~~li~~~~~~g--~~~~A~~~~~~m~~ 109 (488)
.-.+|.+|++.+ ..++|+....+.+.
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 346778888887 67777777777664
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=2.5 Score=41.19 Aligned_cols=158 Identities=11% Similarity=0.090 Sum_probs=104.8
Q ss_pred HHH--HHHHHHHHhcC-----ChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHh---------c-cCCHHHHHHHHHhcc
Q 036287 183 TTY--NSLIAGLAMHG-----RSIEAVEMFREMIN-QGIRPTKVTFVGVLNACS---------H-GGLVDLGFEIFQSMT 244 (488)
Q Consensus 183 ~~~--~~li~~~~~~g-----~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~---------~-~g~~~~a~~~~~~~~ 244 (488)
..| ..++.+....- ..+.|+.+|.+... +...|+-..-.+++.-|- . .....+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 566 66666654422 35678889999882 225666433222222211 1 234556666666665
Q ss_pred cccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchh-
Q 036287 245 RDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGT- 321 (488)
Q Consensus 245 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~- 321 (488)
+ --+-|......+..++.-.|+++.|..+|++. ...|| +.+|......+.-.|+.++|...+++.+++.|....+
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 3 22335666667777778888899999999998 67787 5677777777788999999999999999999876433
Q ss_pred -HHHHHHHHhcCCChHHHHHHHH
Q 036287 322 -YVLLSNAYASSGKWKEAVQIRA 343 (488)
Q Consensus 322 -~~~l~~~~~~~g~~~~a~~~~~ 343 (488)
....+++|...+ .++|.+++-
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 410 VIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHcCCc-hhhhHHHHh
Confidence 334455777664 577777664
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.00 E-value=2.8 Score=34.07 Aligned_cols=39 Identities=10% Similarity=0.180 Sum_probs=17.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHhc
Q 036287 157 LINMYSRCGDIDKALQVFEEMKER---DVTTYNSLIAGLAMH 195 (488)
Q Consensus 157 li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~ 195 (488)
++..+...+........++.+... +....|.++..|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 444444445555555555444322 233444555555443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.12 Score=30.18 Aligned_cols=32 Identities=16% Similarity=0.016 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC
Q 036287 286 IMLGSLLSACKIHGKLQLGEQIAKRLLDCRSA 317 (488)
Q Consensus 286 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 317 (488)
.+|..+...+...|++++|+..++++++++|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777777788888888888888888887775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.31 Score=44.37 Aligned_cols=63 Identities=22% Similarity=0.279 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 285 HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 285 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
..++..++..+...|+++.+...++++++.+|-+...|..++.+|.+.|+...|+..|+.+.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 445667788888889999999999999999999999999999999999999999999998876
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.75 Score=36.27 Aligned_cols=89 Identities=15% Similarity=0.138 Sum_probs=60.1
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC-CCC---chhHHHHHHHHhcCCCh
Q 036287 262 LLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCR-SAD---SGTYVLLSNAYASSGKW 335 (488)
Q Consensus 262 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~g~~ 335 (488)
+++..|+++.|++.|.+. .+-| .+..||.=..++.-.|+.++|..-+++++++. |.. ...|..-...|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 456677777777777765 3333 46677777777777788888887777777754 322 12455566677777888
Q ss_pred HHHHHHHHHHHhCCC
Q 036287 336 KEAVQIRAKMKEAGV 350 (488)
Q Consensus 336 ~~a~~~~~~m~~~g~ 350 (488)
+.|..=|+...+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 888777777766554
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.2 Score=29.05 Aligned_cols=33 Identities=12% Similarity=-0.013 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC
Q 036287 286 IMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD 318 (488)
Q Consensus 286 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 318 (488)
..|..+...+...|++++|.+.++++++++|.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356667777777788888888888777777754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=93.69 E-value=10 Score=39.63 Aligned_cols=77 Identities=12% Similarity=0.032 Sum_probs=35.1
Q ss_pred hHHHHHHHHhCC-CCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHH
Q 036287 269 PEEAYDFITNMK-IAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKM 345 (488)
Q Consensus 269 ~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 345 (488)
.++|.+.+.... ...+...+..-+......++.+.+...+..|-+.....+....=++.++...|+.++|...|+..
T Consensus 295 ~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 295 TDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred CHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555431 11122223333333335555555555555543322223334444555555556666666655554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.51 Score=37.14 Aligned_cols=90 Identities=16% Similarity=0.055 Sum_probs=54.7
Q ss_pred HHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC----CCCC--CHHHHHHHHHHHHHhC
Q 036287 226 ACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM----KIAP--DHIMLGSLLSACKIHG 299 (488)
Q Consensus 226 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p--~~~~~~~ll~~~~~~g 299 (488)
+.+..|+++.|++.|.+... -.+.....||.-..+|.-.|+.++|++-+++. +-+. --..|..=...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 34556667777776666652 22334566777777777777777776666654 2110 0122333344567778
Q ss_pred ChhHHHHHHHHHHhcCCC
Q 036287 300 KLQLGEQIAKRLLDCRSA 317 (488)
Q Consensus 300 ~~~~a~~~~~~~~~~~p~ 317 (488)
+.+.|..-|+.+.+++.+
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 888888888888777644
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.26 E-value=2.4 Score=39.21 Aligned_cols=151 Identities=14% Similarity=0.069 Sum_probs=102.7
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHc---CCCCcHhHHHHHHHHHHhcCCHHH
Q 036287 93 RNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKH---RIDLNHIVGGALINMYSRCGDIDK 169 (488)
Q Consensus 93 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~y~~~g~~~~ 169 (488)
.+|+..+|-..++++++. .|.|...+.-.=.+|.-.|+.+.-+..++.++.. ++|...++...+.-+...+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 467888888888888876 5678888888888999999998888888888754 233333444444445567899999
Q ss_pred HHHHHHhcccC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhccCCHHHHHHHHHhc
Q 036287 170 ALQVFEEMKER---DVTTYNSLIAGLAMHGRSIEAVEMFREMINQ---GIRPTKVTFVGVLNACSHGGLVDLGFEIFQSM 243 (488)
Q Consensus 170 A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 243 (488)
|++.-++..+- |.-+-.+....+-..|+..++.+...+-... +-..-..-|-...-.+...+.++.|+++|+.-
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 99998887763 4445556677777889999998887664322 10001122333333445568889999888764
Q ss_pred c
Q 036287 244 T 244 (488)
Q Consensus 244 ~ 244 (488)
.
T Consensus 274 i 274 (491)
T KOG2610|consen 274 I 274 (491)
T ss_pred H
Confidence 3
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.20 E-value=2.8 Score=33.97 Aligned_cols=62 Identities=11% Similarity=0.095 Sum_probs=33.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHhcccccCccc
Q 036287 189 IAGLAMHGRSIEAVEMFREMINQGIRP---TKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEP 251 (488)
Q Consensus 189 i~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 251 (488)
.....+.|++++|.+.|+.+... .+. ....-..++.++...+++++|...++..++-+.-.|
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 33444566666666666666654 111 123344455566666666666666666664433333
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.87 E-value=1.8 Score=34.26 Aligned_cols=85 Identities=15% Similarity=0.225 Sum_probs=44.7
Q ss_pred HHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHH
Q 036287 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHS 140 (488)
Q Consensus 61 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 140 (488)
..||++......+-.+. .+....+..+....++|.-++-.+++..+.+. -.|++.....+.+||.+.|+..++.+++.
T Consensus 67 s~C~NlKrVi~C~~~~n-~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~ 144 (161)
T PF09205_consen 67 SKCGNLKRVIECYAKRN-KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLK 144 (161)
T ss_dssp GG-S-THHHHHHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hhhcchHHHHHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 34444444444443332 23334455566667777777777777666553 25666666777777777777777777777
Q ss_pred HHHHcCC
Q 036287 141 YMGKHRI 147 (488)
Q Consensus 141 ~~~~~g~ 147 (488)
.+-+.|+
T Consensus 145 ~ACekG~ 151 (161)
T PF09205_consen 145 EACEKGL 151 (161)
T ss_dssp HHHHTT-
T ss_pred HHHHhch
Confidence 7766664
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.85 E-value=6.5 Score=34.88 Aligned_cols=195 Identities=10% Similarity=0.010 Sum_probs=84.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCC--HHHHHHHHHHHHHcCC
Q 036287 21 RLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVKVKD--TVCWTAMIDGLVRNGE 96 (488)
Q Consensus 21 ~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~--~~~~~~li~~~~~~g~ 96 (488)
|..-..+|....++++|...+.+..+ .++...|.+ ...++.|.-+.+++..-+ +..|+--...|.++|.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gs 106 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGS 106 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC
Confidence 44444555556666666665544332 111111111 122344444444443222 2345555666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCC-----CCcHhHHHHHHHHHHhcCCHHHHH
Q 036287 97 MARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRI-----DLNHIVGGALINMYSRCGDIDKAL 171 (488)
Q Consensus 97 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-----~~~~~~~~~li~~y~~~g~~~~A~ 171 (488)
++.|-..+++.-+. ....+++.|.+++++....-. .--...+..+...+.+...+++|-
T Consensus 107 pdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 107 PDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred cchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence 66665555544321 122334455555554432110 001122333444555555555555
Q ss_pred HHHHhccc--------CCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHhccCCHHHHHHH
Q 036287 172 QVFEEMKE--------RDV-TTYNSLIAGLAMHGRSIEAVEMFREMINQG---IRPTKVTFVGVLNACSHGGLVDLGFEI 239 (488)
Q Consensus 172 ~~~~~~~~--------~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~~ll~a~~~~g~~~~a~~~ 239 (488)
..|.+-.. ++. ..+-+.|-.|.-..++..|...++.--+.+ -.-|..+...||.+|- .|+.+++..+
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kv 249 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKV 249 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHH
Confidence 44443221 111 123334444444555666666665533221 1123344445555443 3444444443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.84 E-value=1.7 Score=40.61 Aligned_cols=46 Identities=15% Similarity=0.304 Sum_probs=21.7
Q ss_pred HHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCchHHHH
Q 036287 91 LVRNGEMARALDLFREMQRD--NVRPNEVTIVCVLSACSQLGALELGR 136 (488)
Q Consensus 91 ~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~ 136 (488)
+.+..+.++|+..+.+-+.. +...--.++..+..+.++.|.++++.
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL 63 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEML 63 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHH
Confidence 34556677777766655442 00111123444444555555544443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.47 Score=29.62 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQRD 110 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 110 (488)
.+|..+...|.+.|++++|+++|++.++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35667777888888888888888888775
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.79 E-value=10 Score=36.87 Aligned_cols=133 Identities=11% Similarity=0.161 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhH-HHH
Q 036287 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQG-IRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHY-GCI 259 (488)
Q Consensus 182 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l 259 (488)
...|-..+++-.+..-.+.|..+|-+..+.| +.++...+++++..++ .|+..-|..+|+.-... -||...| .-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHH
Confidence 4567788888888888999999999999988 6788888888888665 47888899999876643 3444443 456
Q ss_pred HHHHHhcCChHHHHHHHHhC--CCCCC--HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC
Q 036287 260 VDLLSRVGRPEEAYDFITNM--KIAPD--HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD 318 (488)
Q Consensus 260 i~~~~~~g~~~~A~~~~~~m--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 318 (488)
++.+.+.++-+.|..+|+.. .+..+ ..+|..++.--..-|++..+..+-+++.+.-|..
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 67778899999999999965 33333 5789999998899999999999999998888765
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.3 Score=28.97 Aligned_cols=26 Identities=8% Similarity=0.236 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQ 108 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~ 108 (488)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777788888888888888887744
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.37 E-value=9.2 Score=35.40 Aligned_cols=61 Identities=13% Similarity=-0.099 Sum_probs=26.4
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCC
Q 036287 252 QIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRS 316 (488)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 316 (488)
+..+-...+.++++.|+..-.-.+++.+.- ++ .....+.++...|+. +|...+..+.+..|
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~-~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELKK-GT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHcC-Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 444444455555555553222222222221 12 223444555555553 45555555555444
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.25 E-value=9.1 Score=35.07 Aligned_cols=117 Identities=10% Similarity=0.054 Sum_probs=70.6
Q ss_pred HHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCH----HHHHHHHHHHHhcCChh
Q 036287 124 SACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDV----TTYNSLIAGLAMHGRSI 199 (488)
Q Consensus 124 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~ 199 (488)
......|++..+...++...... +.+..+.-.++.+|...|+.+.|..++..++.... ....+-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34466788888888888887765 23355566788888999999999999988875321 11222333444444444
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHhcc
Q 036287 200 EAVEMFREMINQGIRP-TKVTFVGVLNACSHGGLVDLGFEIFQSMT 244 (488)
Q Consensus 200 ~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 244 (488)
+...+-++.-. .| |...-..+...+...|+.+.|.+.+-.+.
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444333 34 44444455566666777777766554444
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.18 E-value=3.6 Score=40.40 Aligned_cols=62 Identities=15% Similarity=0.141 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHhcCCC--CchhHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 036287 289 GSLLSACKIHGKLQLGEQIAKRLLDCRSA--DSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 289 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 350 (488)
..|...+.+.|+.++|.+.++++.+..|. +......|++++...+.+.++..++.+-.+-..
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l 326 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL 326 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC
Confidence 44556666777777777777777765543 344666777777777777777777776544333
|
The molecular function of this protein is uncertain. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.98 E-value=3.8 Score=38.15 Aligned_cols=61 Identities=11% Similarity=0.290 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhccCC--HHHHHHHHHhcccccCcccChhhHHHHH
Q 036287 199 IEAVEMFREMINQGIRPTKV--TFVGVLNACSHGGL--VDLGFEIFQSMTRDYGIEPQIEHYGCIV 260 (488)
Q Consensus 199 ~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li 260 (488)
+.+...|+.+.+.|...+.. ....++..+..... ..++.++++.+.+. ++++...+|..+.
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lG 224 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHH
Confidence 45666777777766654332 33334433333322 34667777777765 7777777766543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.96 E-value=6 Score=37.17 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=27.3
Q ss_pred HHcCCHHHHHHHHhhcCCC------CHHHHHHHHHHHHHcCCHHHHHHH
Q 036287 61 VEHGLVENAFEVFSRVKVK------DTVCWTAMIDGLVRNGEMARALDL 103 (488)
Q Consensus 61 ~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~ 103 (488)
....+.++|+..+.+...+ -..++..+..+..+.|.+++++..
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~ 65 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF 65 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH
Confidence 4556777777777665432 123566677777788877776653
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.94 E-value=4.1 Score=40.81 Aligned_cols=148 Identities=19% Similarity=0.213 Sum_probs=66.9
Q ss_pred cCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036287 31 CGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRD 110 (488)
Q Consensus 31 ~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 110 (488)
.|+++.|-.++..++. ...+.++.-+.+.|-.++|+++-- .||. -.....+.|+.+.|.++..+.
T Consensus 599 rrd~~~a~~vLp~I~k----~~rt~va~Fle~~g~~e~AL~~s~---D~d~-----rFelal~lgrl~iA~~la~e~--- 663 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPK----EIRTKVAHFLESQGMKEQALELST---DPDQ-----RFELALKLGRLDIAFDLAVEA--- 663 (794)
T ss_pred hccccccccccccCch----hhhhhHHhHhhhccchHhhhhcCC---Chhh-----hhhhhhhcCcHHHHHHHHHhh---
Confidence 4666666665555542 223444555555565555555421 1111 011223445555555544332
Q ss_pred CCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHH
Q 036287 111 NVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIA 190 (488)
Q Consensus 111 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 190 (488)
-+..-|..|..+....+++..|.+.+...... ..|+-+|...|+-+....+-....+. -..|....
T Consensus 664 ---~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l~~la~~~~~~--g~~N~AF~ 729 (794)
T KOG0276|consen 664 ---NSEVKWRQLGDAALSAGELPLASECFLRARDL---------GSLLLLYTSSGNAEGLAVLASLAKKQ--GKNNLAFL 729 (794)
T ss_pred ---cchHHHHHHHHHHhhcccchhHHHHHHhhcch---------hhhhhhhhhcCChhHHHHHHHHHHhh--cccchHHH
Confidence 13444555555555555665555555544432 23444444455444332222222210 01122223
Q ss_pred HHHhcCChhHHHHHHHH
Q 036287 191 GLAMHGRSIEAVEMFRE 207 (488)
Q Consensus 191 ~~~~~g~~~~A~~l~~~ 207 (488)
+|...|+++++++++.+
T Consensus 730 ~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 730 AYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHcCCHHHHHHHHHh
Confidence 44455666666655543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.93 E-value=1.7 Score=39.73 Aligned_cols=76 Identities=21% Similarity=0.305 Sum_probs=60.1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCHHHHHH
Q 036287 151 HIVGGALINMYSRCGDIDKALQVFEEMKER---DVTTYNSLIAGLAMHGRSIEAVEMFREMIN-----QGIRPTKVTFVG 222 (488)
Q Consensus 151 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ 222 (488)
..++..++..+..+|+.+.+...++++... |...|..++.+|.+.|+...|+..|+++.+ .|+.|-..+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 445677888999999999999999888753 667899999999999999999999998875 467776665554
Q ss_pred HHHH
Q 036287 223 VLNA 226 (488)
Q Consensus 223 ll~a 226 (488)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.91 E-value=14 Score=36.51 Aligned_cols=138 Identities=14% Similarity=0.089 Sum_probs=71.3
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 036287 93 RNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQ 172 (488)
Q Consensus 93 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 172 (488)
+..+++.-+++-++.++ +.||-.+.-+++ +--......++++++++.++.|-. . |.+....+..-.
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~-------~----lg~s~~~~~~g~ 245 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA-------S----LGKSQFLQHHGH 245 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH-------h----hchhhhhhcccc
Confidence 44455555555555555 345543333332 222345577888888887765510 0 000000000000
Q ss_pred HHHhcccCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHhcc
Q 036287 173 VFEEMKERD----VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRP-TKVTFVGVLNACSHGGLVDLGFEIFQSMT 244 (488)
Q Consensus 173 ~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 244 (488)
..+....++ +..-.-+..+.-+.|+.++|++.|++|.+....- +......|+.++...+.+.++..++.+-.
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 111111222 2222335555667788888888888887643211 22344567778888888888888777754
|
The molecular function of this protein is uncertain. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=91.75 E-value=13 Score=35.64 Aligned_cols=67 Identities=13% Similarity=0.125 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCC----CCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 036287 284 DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRS----ADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 284 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 350 (488)
...+|..+...+++.|+++.|...+.++.+.++ ..+.....-+......|+..+|...++...+..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999988652 2456677778889999999999999988877433
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.70 E-value=4.8 Score=37.49 Aligned_cols=126 Identities=12% Similarity=0.227 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----chHHHHHHHHHHHHcCC---CCcHhHHHHHHHHHHhcCCH
Q 036287 97 MARALDLFREMQRDNVRPNEVTIVCVLSACSQ--LG----ALELGRWIHSYMGKHRI---DLNHIVGGALINMYSRCGDI 167 (488)
Q Consensus 97 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~y~~~g~~ 167 (488)
+++.+.+++.|.+.|++-+..+|.+....... .. ....+..+|+.|.+.-. .++...+.+|+.+ ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556788999999999888888775544433 22 35678899999988642 3444555555543 33333
Q ss_pred ----HHHHHHHHhccc-----CCH-HHHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036287 168 ----DKALQVFEEMKE-----RDV-TTYNSLIAGLAMHGR--SIEAVEMFREMINQGIRPTKVTFVGVL 224 (488)
Q Consensus 168 ----~~A~~~~~~~~~-----~~~-~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll 224 (488)
+.++.+|+.+.+ .|. .....++........ ...+.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 445566666554 233 333333333222222 457899999999999988877766443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.63 E-value=3.8 Score=36.94 Aligned_cols=90 Identities=14% Similarity=0.085 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHhcccccCcc-cChhhHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHhCChhHH
Q 036287 231 GLVDLGFEIFQSMTRDYGIE-PQIEHYGCIVDLLSRVGRPEEAYDFITNM----KIAPD-HIMLGSLLSACKIHGKLQLG 304 (488)
Q Consensus 231 g~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-~~~~~~ll~~~~~~g~~~~a 304 (488)
|++..|.+.|....+.|.-. -....+-.|...+...|++++|...|..+ |-.|- +..+-.|.......|+.+.|
T Consensus 155 gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A 234 (262)
T COG1729 155 GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEA 234 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHH
Confidence 34555555554444332110 01223334555555555555555555544 22222 34555555566666777777
Q ss_pred HHHHHHHHhcCCCCch
Q 036287 305 EQIAKRLLDCRSADSG 320 (488)
Q Consensus 305 ~~~~~~~~~~~p~~~~ 320 (488)
...++++.+.-|..+.
T Consensus 235 ~atl~qv~k~YP~t~a 250 (262)
T COG1729 235 CATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHHHHHCCCCHH
Confidence 7777777776666543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.53 E-value=10 Score=34.07 Aligned_cols=58 Identities=16% Similarity=0.112 Sum_probs=45.2
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHhcCCCCch---hHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 290 SLLSACKIHGKLQLGEQIAKRLLDCRSADSG---TYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 290 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
.+..-|.+.|.+..|..-++++++.-|..+. .+..+..+|...|..++|.+.-+-+..
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 3456688999999999999999997655443 555678899999999999988665543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.53 E-value=8.8 Score=33.45 Aligned_cols=183 Identities=20% Similarity=0.183 Sum_probs=94.3
Q ss_pred HHhcCCHHHHHHHHHhcc--cCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 036287 161 YSRCGDIDKALQVFEEMK--ERD-VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGF 237 (488)
Q Consensus 161 y~~~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 237 (488)
|-..|-+.-|+--|.+.. .|+ +..+|-+.--+...|+++.|.+.|+...+....-+-...+.- -++.-.|+++.|.
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg-i~~YY~gR~~LAq 153 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG-IALYYGGRYKLAQ 153 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc-eeeeecCchHhhH
Confidence 333444445554444433 232 456777777778888888888888887774322221112211 2233457777776
Q ss_pred HHHHhcccccCcccChhhHHHHHH-HHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCC
Q 036287 238 EIFQSMTRDYGIEPQIEHYGCIVD-LLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRS 316 (488)
Q Consensus 238 ~~~~~~~~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 316 (488)
+=|...-.. .|+. .|..|-- .--+.-++.+|..-+.+--...|..-|...|-.+.- |.+. -+.+++++.+...
T Consensus 154 ~d~~~fYQ~---D~~D-PfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~ 227 (297)
T COG4785 154 DDLLAFYQD---DPND-PFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADAT 227 (297)
T ss_pred HHHHHHHhc---CCCC-hHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhcc
Confidence 655554432 2221 1222211 112334555665433322112344445544443321 1111 1223333333222
Q ss_pred CC-------chhHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 036287 317 AD-------SGTYVLLSNAYASSGKWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 317 ~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 350 (488)
++ ..+|.-|..-|...|+.++|..+|+.....++
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 22 35888999999999999999999998765443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.52 E-value=3.7 Score=34.33 Aligned_cols=124 Identities=13% Similarity=0.087 Sum_probs=58.4
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhH-HHHH--HHHHHhcCCH
Q 036287 92 VRNGEMARALDLFREMQRDNVRPNEV-TIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIV-GGAL--INMYSRCGDI 167 (488)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~l--i~~y~~~g~~ 167 (488)
++.+..++|+.-|..+.+.|...=++ ....+.....+.|+-..|...|.++-+....|-+.- ..-| .-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 44555566666666665554321111 111122233455555666666665544332222110 0001 1123445666
Q ss_pred HHHHHHHHhcccC-C---HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 036287 168 DKALQVFEEMKER-D---VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRP 215 (488)
Q Consensus 168 ~~A~~~~~~~~~~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 215 (488)
++...-.+.+..+ + ...-.+|.-+-.+.|++.+|.+.|.++......|
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 6666555554432 1 2334455555566777777777777766543333
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.30 E-value=0.41 Score=28.38 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=20.3
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHH
Q 036287 321 TYVLLSNAYASSGKWKEAVQIRAKMK 346 (488)
Q Consensus 321 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 346 (488)
+|..|.++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888889999999998888754
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.05 E-value=12 Score=34.16 Aligned_cols=59 Identities=20% Similarity=0.142 Sum_probs=52.5
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 289 GSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 289 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
+.....|...|.+.+|.++.++.+.++|-+...+..|++.++..|+--.+.+-++.+.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 33446789999999999999999999999999999999999999998888888887753
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.97 E-value=4.3 Score=33.94 Aligned_cols=49 Identities=12% Similarity=0.078 Sum_probs=23.3
Q ss_pred hcCChHHHHHHHHhCCC--CCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHh
Q 036287 265 RVGRPEEAYDFITNMKI--APD-HIMLGSLLSACKIHGKLQLGEQIAKRLLD 313 (488)
Q Consensus 265 ~~g~~~~A~~~~~~m~~--~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 313 (488)
..|.++....-.+.+.. .|- ...-.+|.-+-.+.|++..|.+.|..+..
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 44555555555554411 111 12223344444555666666666666554
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.30 E-value=17 Score=34.68 Aligned_cols=147 Identities=6% Similarity=-0.112 Sum_probs=75.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC--hh
Q 036287 180 RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRP---TKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ--IE 254 (488)
Q Consensus 180 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~ 254 (488)
....+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+..+|...++...+. .+..+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 345678888888888888888888888877643211 2223333344455567778887777766641 11111 11
Q ss_pred hHHHHHHHHHhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHHh------CChhHHHHHHHHHHhcCCCCchhHHHHHH
Q 036287 255 HYGCIVDLLSRVGRPEEAYDF-ITNMKIAPDHIMLGSLLSACKIH------GKLQLGEQIAKRLLDCRSADSGTYVLLSN 327 (488)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 327 (488)
....+...+.. ..+..... ........-...+..+..-+... ++.+.+.+.|+.+.+..|....+|..+..
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 00000000 00000000022233333333333 77888899999999988887777776666
Q ss_pred HH
Q 036287 328 AY 329 (488)
Q Consensus 328 ~~ 329 (488)
.+
T Consensus 301 ~~ 302 (352)
T PF02259_consen 301 FN 302 (352)
T ss_pred HH
Confidence 55
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=90.01 E-value=0.58 Score=27.05 Aligned_cols=30 Identities=10% Similarity=0.036 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhcCC
Q 036287 287 MLGSLLSACKIHGKLQLGEQIAKRLLDCRS 316 (488)
Q Consensus 287 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 316 (488)
+|..+...+...|++++|...+++.+++.|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 466666777777777777777777777766
|
... |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=89.90 E-value=6.8 Score=29.41 Aligned_cols=61 Identities=16% Similarity=0.227 Sum_probs=46.9
Q ss_pred HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 036287 57 INCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV 120 (488)
Q Consensus 57 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 120 (488)
++.+...|++++|..+.+.+..||...|-+|... +.|..+++..-+.+|...| .|...+|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 3556778999999999999999999999887654 6677777777777887776 55555554
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.88 E-value=15 Score=38.54 Aligned_cols=179 Identities=13% Similarity=0.066 Sum_probs=109.3
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcH--hHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhc
Q 036287 118 TIVCVLSACSQLGALELGRWIHSYMGKHRIDLNH--IVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMH 195 (488)
Q Consensus 118 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 195 (488)
+...-+....+...++.|..+-+ ..+.+++. .+...-.+-+.+.|++++|...|-+-...-.. .-+|.-|...
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLda 410 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDA 410 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCH
Confidence 34445555666666666665533 33433332 22333344455778888888777664431111 1245556666
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHH
Q 036287 196 GRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDF 275 (488)
Q Consensus 196 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 275 (488)
.+..+-..+++.+.+.|+.. ...-..|+.+|.+.++.++-.++.+...+ |.- ..-....+..+.+.+-+++|..+
T Consensus 411 q~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~~--g~~--~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCDK--GEW--FFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCCC--cce--eeeHHHHHHHHHHhChHHHHHHH
Confidence 66777778888888887543 33445688899999999888888776552 222 11233456777778888888887
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 036287 276 ITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRL 311 (488)
Q Consensus 276 ~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 311 (488)
-.+.+. +......++ -..+++++|.+.++.+
T Consensus 486 A~k~~~--he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 486 ATKFKK--HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhcc--CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 777653 333334333 3557888888877755
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.85 E-value=0.87 Score=26.30 Aligned_cols=29 Identities=10% Similarity=0.229 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQRD 110 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 110 (488)
.+|..+...|...|++++|+..|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46777888888888888888888887763
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.53 E-value=6 Score=33.71 Aligned_cols=94 Identities=12% Similarity=0.096 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcccCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH---H
Q 036287 152 IVGGALINMYSRCGDIDKALQVFEEMKERD------VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFV---G 222 (488)
Q Consensus 152 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~---~ 222 (488)
..+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......|++..+.....+....-..+...... .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 356677888888888888888888877632 2346667777777888888887777765432221111111 1
Q ss_pred HHHH--HhccCCHHHHHHHHHhccc
Q 036287 223 VLNA--CSHGGLVDLGFEIFQSMTR 245 (488)
Q Consensus 223 ll~a--~~~~g~~~~a~~~~~~~~~ 245 (488)
+..+ +...+++..|-+.|-....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 1111 2335666666666665543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.42 E-value=2.4 Score=36.27 Aligned_cols=88 Identities=18% Similarity=0.154 Sum_probs=67.0
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-C-----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCC
Q 036287 262 LLSRVGRPEEAYDFITNM-KIAP-D-----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGK 334 (488)
Q Consensus 262 ~~~~~g~~~~A~~~~~~m-~~~p-~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 334 (488)
-+.+.|++++|..-|... ..-| . .+.|..=..++.+.+..+.|+.-..+.++++|....+...-..+|.+...
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 355677777777766665 2112 1 34455555677888999999999999999999887787777889999999
Q ss_pred hHHHHHHHHHHHhCC
Q 036287 335 WKEAVQIRAKMKEAG 349 (488)
Q Consensus 335 ~~~a~~~~~~m~~~g 349 (488)
+++|++=|+++.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999887753
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=89.26 E-value=18 Score=33.43 Aligned_cols=18 Identities=11% Similarity=0.368 Sum_probs=12.7
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 036287 92 VRNGEMARALDLFREMQR 109 (488)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~ 109 (488)
.+.|+.+.|..++.+...
T Consensus 4 ~~~~~~~~A~~~~~K~~~ 21 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKD 21 (278)
T ss_pred hhhCCHHHHHHHHHHhhh
Confidence 356777777777777655
|
It is also involved in sporulation []. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.80 E-value=26 Score=34.65 Aligned_cols=278 Identities=9% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH-----
Q 036287 35 KDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVK--DTVCWTAMIDGLVRNGEMARALDLFREM----- 107 (488)
Q Consensus 35 ~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m----- 107 (488)
+.|.+.++-..+.+ .......-.++.---+.+....+|+....+ ....|+..|..+...-....-..+...|
T Consensus 268 ~laqr~l~i~~~td-l~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~ 346 (568)
T KOG2396|consen 268 DLAQRELEILSQTD-LQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRK 346 (568)
T ss_pred HHHHHHHHHHHHhh-ccchhhhhhchhcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHh--------ccc
Q 036287 108 QRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEE--------MKE 179 (488)
Q Consensus 108 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~--------~~~ 179 (488)
...+......-+........-......+...-..+...++..+...|..-+........ ++.-+|.+ +..
T Consensus 347 ~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~s--D~q~~f~~l~n~~r~~~~s 424 (568)
T KOG2396|consen 347 AHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKS--DFQMLFEELFNHLRKQVCS 424 (568)
T ss_pred HHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHhcc
Q ss_pred CCHHHHHHHH-HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH-HHHHHHhccCCHHHHHHHHHhcccccCcccChhhHH
Q 036287 180 RDVTTYNSLI-AGLAMHGRSIEAVEMFREMINQGIRPTKVTFV-GVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYG 257 (488)
Q Consensus 180 ~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 257 (488)
+-..+|++.. ..+.+....+..+..+..+ ..|+..|+. .++.-+-+.|-..+|..++..+.. --+|+...|.
T Consensus 425 ~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~----~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r 498 (568)
T KOG2396|consen 425 ELLISWASASEGDSLQEDTLDLIISALLSV----IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFR 498 (568)
T ss_pred hhHHHHHHHhhccchhHHHHHHHHHHHHHh----cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHH
Q ss_pred HHHHH---HHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHh-cCCCCchhH
Q 036287 258 CIVDL---LSRVGRPEEAYDFITNM--KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLD-CRSADSGTY 322 (488)
Q Consensus 258 ~li~~---~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~ 322 (488)
.+|.. ...+| +..+..+++.| .+..|+..|...+.--..+|..+.+-.++.++.+ ++|....++
T Consensus 499 ~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~~~af 568 (568)
T KOG2396|consen 499 KMIQFEKEQESCN-LANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAMKTLQGESAEAF 568 (568)
T ss_pred HHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHHHhhChhhhhcC
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.73 E-value=6.9 Score=33.35 Aligned_cols=63 Identities=11% Similarity=0.117 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQRDNVRPN--EVTIVCVLSACSQLGALELGRWIHSYMGK 144 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 144 (488)
..+..+...|.+.|+.++|++.|.++......|. ...+..+++.+...+++..+......+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3677788888888888888888888877544443 24556677777777777777776665543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.21 E-value=8.4 Score=38.77 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 036287 152 IVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFRE 207 (488)
Q Consensus 152 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 207 (488)
.-|..|.++..+.|++..|.+.|.... -|..|+-.+...|+.+....+-..
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~-----d~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRAR-----DLGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhc-----chhhhhhhhhhcCChhHHHHHHHH
Confidence 344555555555555555555554432 233344444444444433333333
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.02 E-value=14 Score=30.63 Aligned_cols=68 Identities=18% Similarity=0.135 Sum_probs=38.1
Q ss_pred hccCCHHHHHHHHHhcccccCcccCh-hhHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHh
Q 036287 228 SHGGLVDLGFEIFQSMTRDYGIEPQI-EHYGCIVDLLSRVGRPEEAYDFITNM-KIAPDHIMLGSLLSACKIH 298 (488)
Q Consensus 228 ~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~ 298 (488)
...++.+.+..++..+. -+.|.. ..-..-...+.+.|++.+|.++|+++ .-.|....-.+|+..|...
T Consensus 21 l~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 34566777777776665 344542 22223344466777888888888777 2233344444555555443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.96 E-value=19 Score=31.94 Aligned_cols=56 Identities=9% Similarity=0.204 Sum_probs=32.8
Q ss_pred HHHhcCChHHHHHHHHhC---CCCCCHHHHHH---HHH--HHH-HhCChhHHHHHHHHHHhcCCC
Q 036287 262 LLSRVGRPEEAYDFITNM---KIAPDHIMLGS---LLS--ACK-IHGKLQLGEQIAKRLLDCRSA 317 (488)
Q Consensus 262 ~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~---ll~--~~~-~~g~~~~a~~~~~~~~~~~p~ 317 (488)
.-+..+++.+|+++|++. .+..+..-|.. ++. .|- -..+.-.+...+++..+.+|.
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 344667888899998877 23323333321 121 122 225666677788888888875
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=87.47 E-value=50 Score=36.40 Aligned_cols=111 Identities=18% Similarity=0.166 Sum_probs=57.9
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 036287 158 INMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGF 237 (488)
Q Consensus 158 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 237 (488)
++.--+.|.+++|..++.-=.+.-...|.+...-+...+.+++|.-.|+..-+ .-..+.+|...|++.+|.
T Consensus 915 ~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l 985 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREAL 985 (1265)
T ss_pred HHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHH
Confidence 33334455555555554332222233444444444555666666666554322 112455666667777777
Q ss_pred HHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC
Q 036287 238 EIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM 279 (488)
Q Consensus 238 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 279 (488)
.+..++.. +-.--..+-..|+.-+...++.-+|-++..+.
T Consensus 986 ~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 986 SLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 77666542 11111223355666666677777776666665
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.30 E-value=36 Score=34.49 Aligned_cols=182 Identities=14% Similarity=0.083 Sum_probs=112.3
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036287 150 NHIVGGALINMYSRCGDIDKALQVFEEMKERDV---TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNA 226 (488)
Q Consensus 150 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 226 (488)
+..+|..-++--.+.|+.+.+.-.|++..-|-. ..|--.+.-....|+.+-|-.++....+--++-...+-..-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 345556666666667777777777766554311 23444444444447777676666655553333222222112223
Q ss_pred HhccCCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhcCChHHHH---HHHHhC-CCCCCHHHHHHHHH-----HHH
Q 036287 227 CSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAY---DFITNM-KIAPDHIMLGSLLS-----ACK 296 (488)
Q Consensus 227 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~ll~-----~~~ 296 (488)
+-..|+.+.|..+++.+.++ . |+ +..-..-+....+.|..+.+. +++... +.+-+..+...+.- .+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 45678999999999999874 3 55 333344466677888888887 555544 22223333333322 234
Q ss_pred HhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCC
Q 036287 297 IHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGK 334 (488)
Q Consensus 297 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 334 (488)
..++.+.|..++.++.+..|++...|..+++.....+.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 56889999999999999999999999999888776653
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.00 E-value=1.1 Score=26.23 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=13.3
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHH
Q 036287 148 DLNHIVGGALINMYSRCGDIDKAL 171 (488)
Q Consensus 148 ~~~~~~~~~li~~y~~~g~~~~A~ 171 (488)
|.+..+|+.|...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334555555555555555555553
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=86.80 E-value=35 Score=33.92 Aligned_cols=91 Identities=8% Similarity=0.009 Sum_probs=40.7
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 036287 151 HIVGGALINMYSRCGDIDKALQVFEEMKE--RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACS 228 (488)
Q Consensus 151 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 228 (488)
.....++++.+...-...-.+.+-.+|.. .+-..+..++..|..+ ..++-..+|+++.+. .-|.+.+..-+.-+.
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~~y 142 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELADKY 142 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHHHH
Confidence 33344455555544444444444444443 3344455555555555 344445555555542 223333333332222
Q ss_pred ccCCHHHHHHHHHhcc
Q 036287 229 HGGLVDLGFEIFQSMT 244 (488)
Q Consensus 229 ~~g~~~~a~~~~~~~~ 244 (488)
..++.+.+..+|.++.
T Consensus 143 Ekik~sk~a~~f~Ka~ 158 (711)
T COG1747 143 EKIKKSKAAEFFGKAL 158 (711)
T ss_pred HHhchhhHHHHHHHHH
Confidence 3345555555555444
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.67 E-value=1.8 Score=24.74 Aligned_cols=29 Identities=14% Similarity=0.279 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQRD 110 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 110 (488)
..|..+...|.+.|++++|++.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35667777788888888888888877663
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=86.59 E-value=36 Score=33.84 Aligned_cols=159 Identities=12% Similarity=0.130 Sum_probs=102.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 036287 80 DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALIN 159 (488)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 159 (488)
|-...-+++..+.++-.+.-...+..+|+.-| .+...|..++..|... ..+.-..+++++++..+. |+....-|++
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44556677888888888888888888888754 5677788888888777 566677788888777654 4555566777
Q ss_pred HHHhcCCHHHHHHHHHhcccC------CH---HHHHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhc
Q 036287 160 MYSRCGDIDKALQVFEEMKER------DV---TTYNSLIAGLAMHGRSIEAVEMFREMIN-QGIRPTKVTFVGVLNACSH 229 (488)
Q Consensus 160 ~y~~~g~~~~A~~~~~~~~~~------~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~ 229 (488)
.|-+ ++.+.+...|.++..+ +. ..|..++..- ..+.+..+.+..+... .|...-.+.+.-+-.-|+.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 7766 7777777777765532 11 2455554321 2345555555555553 2333334445555566677
Q ss_pred cCCHHHHHHHHHhccc
Q 036287 230 GGLVDLGFEIFQSMTR 245 (488)
Q Consensus 230 ~g~~~~a~~~~~~~~~ 245 (488)
..++++|.+++..+.+
T Consensus 218 ~eN~~eai~Ilk~il~ 233 (711)
T COG1747 218 NENWTEAIRILKHILE 233 (711)
T ss_pred ccCHHHHHHHHHHHhh
Confidence 7777777777776664
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=86.59 E-value=4.6 Score=32.90 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=35.5
Q ss_pred hCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 298 HGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 298 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
.++.+.++.++..+.-+.|..+..-..-...+...|+|++|.++++++.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 5666777777777776777666666666666677777777777777766544
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.41 E-value=1.9 Score=26.02 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQR 109 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 109 (488)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888877654
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=86.34 E-value=19 Score=30.28 Aligned_cols=132 Identities=13% Similarity=0.160 Sum_probs=85.5
Q ss_pred HHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHc-CCHHHHHHHHhhcCCCCHHHH
Q 036287 6 HGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEH-GLVENAFEVFSRVKVKDTVCW 84 (488)
Q Consensus 6 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~-g~~~~A~~~f~~~~~~~~~~~ 84 (488)
...+.+.|+.|+..++..+++.+.+.|++..-..++..-.-+|+...--.|++.-.+. .-..-|.+.+.++. ..+
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----~~~ 92 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----TAY 92 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----hhH
Confidence 3445567999999999999999999999999888876544444222222222221111 11344555555553 356
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHc
Q 036287 85 TAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKH 145 (488)
Q Consensus 85 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 145 (488)
..++..+...|++-+|+++.+..... +......++.+..+.+|...-..++....+.
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 67778899999999999998775332 1222345677777777777666666666554
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=85.75 E-value=30 Score=32.06 Aligned_cols=239 Identities=10% Similarity=0.027 Sum_probs=149.3
Q ss_pred CCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHCCCCCCHHHH
Q 036287 44 MPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEM----ARALDLFREMQRDNVRPNEVTI 119 (488)
Q Consensus 44 m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~ 119 (488)
+...+ ..+....+.++.+.|..+-...+..-+..+|...-...+.++.+.|+. .+++..+..+... .|+...-
T Consensus 32 L~d~d-~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 32 LDDHN-SLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred HhCCC-HHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 33344 666666777777777654444444444566777767777778888764 4677777777443 4666666
Q ss_pred HHHHHHHHhcCchHH--HHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcC-
Q 036287 120 VCVLSACSQLGALEL--GRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHG- 196 (488)
Q Consensus 120 ~~ll~~~~~~~~~~~--a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g- 196 (488)
...+.++...+.... .......+...-..++..+-...+.++.+.|+.+....+..-+.++|...-...+.++.+.+
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~ 188 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKY 188 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCC
Confidence 677777666542111 11222223222224466777777888888887554444555555677666666666666653
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHH
Q 036287 197 RSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFI 276 (488)
Q Consensus 197 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 276 (488)
+..++...+..+.. .+|...-...+.++.+.|+. .+...+-...+. ++ .....+.+++..|.. +|...+
T Consensus 189 ~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L 257 (280)
T PRK09687 189 DNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVL 257 (280)
T ss_pred CCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHH
Confidence 24567777777764 45777777788888888885 455444444432 22 234678889999985 677777
Q ss_pred HhC-CCCCCHHHHHHHHHHHH
Q 036287 277 TNM-KIAPDHIMLGSLLSACK 296 (488)
Q Consensus 277 ~~m-~~~p~~~~~~~ll~~~~ 296 (488)
..+ .-.||..+-...+.+|.
T Consensus 258 ~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 258 DTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHhhCCChhHHHHHHHHHh
Confidence 776 44668777777666664
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.62 E-value=53 Score=34.81 Aligned_cols=121 Identities=13% Similarity=0.119 Sum_probs=77.1
Q ss_pred eeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036287 51 VASTVMINCYVEHGLVENAFEVFSRVKVKDTV---CWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACS 127 (488)
Q Consensus 51 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 127 (488)
.....-+..+.+...++.|..+-+.-..+... ....-.+-+.+.|++++|...|-+-... +.|. .++.-+.
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfL 408 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFL 408 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhc
Confidence 34556677778888888888887664422111 2233344566788888888888776543 2332 2344445
Q ss_pred hcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 036287 128 QLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMK 178 (488)
Q Consensus 128 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 178 (488)
+......-..+++.+.+.|+.. ...-..|+.+|.+.++.++-.+..+...
T Consensus 409 daq~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred CHHHHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 5555666666777778887653 3334568888888888887777766554
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.38 E-value=0.88 Score=37.19 Aligned_cols=69 Identities=19% Similarity=0.283 Sum_probs=44.9
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcC
Q 036287 5 IHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVK 77 (488)
Q Consensus 5 i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 77 (488)
..+.++..+-..+....+.|+..|++.++.+...++++.... .-...++..+.+.|.+++|.-++.++.
T Consensus 29 yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~----yd~~~~~~~c~~~~l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 29 YLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN----YDLDKALRLCEKHGLYEEAVYLYSKLG 97 (143)
T ss_dssp CHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS----S-CTHHHHHHHTTTSHHHHHHHHHCCT
T ss_pred HHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc----cCHHHHHHHHHhcchHHHHHHHHHHcc
Confidence 455666666667788899999999999888888888773332 233455555556666666665555543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.37 E-value=17 Score=33.69 Aligned_cols=91 Identities=5% Similarity=0.094 Sum_probs=49.0
Q ss_pred eeHHHHHHHHHHcCCHHHHHHHHhhcCC-C--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036287 51 VASTVMINCYVEHGLVENAFEVFSRVKV-K--------DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVC 121 (488)
Q Consensus 51 ~~~~~li~~~~~~g~~~~A~~~f~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 121 (488)
.+-..++..-....+++++...+-++.. | ...+|--++. .-++++++.++..=.+-|+-||.+++..
T Consensus 65 ~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 65 LTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred eehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccchhhHHH
Confidence 3334444444445566666665555441 1 1222222222 2245566666666666666666666666
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHc
Q 036287 122 VLSACSQLGALELGRWIHSYMGKH 145 (488)
Q Consensus 122 ll~~~~~~~~~~~a~~~~~~~~~~ 145 (488)
++..+.+.++...|.++.-.|+..
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHH
Confidence 666666666666666665555444
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=85.21 E-value=4 Score=30.37 Aligned_cols=63 Identities=16% Similarity=0.248 Sum_probs=44.4
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHH
Q 036287 197 RSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVD 261 (488)
Q Consensus 197 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 261 (488)
+.-++.+-++.+....+.|+.....+.+.||.+.+++..|.++|+.+..+ ...+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHHH
Confidence 44466666777777778888888888888888888888888888877643 2223445555543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.20 E-value=14 Score=31.70 Aligned_cols=128 Identities=7% Similarity=-0.057 Sum_probs=71.1
Q ss_pred chhhHHHHHHHHHh-cCChHHHHHHHhhCCCCCceeeHH--HHHHHHHHcCCHHHHHHHHhhcC-CCCHH-----HHHHH
Q 036287 17 NRSTRLKLVELYGK-CGEFKDAMQLFDEMPECNDVVAST--VMINCYVEHGLVENAFEVFSRVK-VKDTV-----CWTAM 87 (488)
Q Consensus 17 ~~~~~~~li~~y~~-~g~~~~A~~~~~~m~~~~~~~~~~--~li~~~~~~g~~~~A~~~f~~~~-~~~~~-----~~~~l 87 (488)
-...|..++..... .-+...+..-|..-..++.-.++. .+...+..+|++++|..-++... .+.-. +--.|
T Consensus 53 AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRL 132 (207)
T COG2976 53 ASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRL 132 (207)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence 34456666665532 112222222233333223222333 33566777888888887777544 22212 22335
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcC
Q 036287 88 IDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHR 146 (488)
Q Consensus 88 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 146 (488)
.+...+.|.+++|+.+++.....+. .......-..++...|+-++|+.-|...++.+
T Consensus 133 Arvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 133 ARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 5667778888888888776544331 12223334566778888888888888887775
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.02 E-value=29 Score=31.37 Aligned_cols=238 Identities=16% Similarity=0.235 Sum_probs=135.1
Q ss_pred CHHHHHHHHhhcC----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCC--CCCHHHHHHHHHHHHhcCch
Q 036287 65 LVENAFEVFSRVK----VKD---TVCWTAMIDGLVRNGEMARALDLFREMQR---DNV--RPNEVTIVCVLSACSQLGAL 132 (488)
Q Consensus 65 ~~~~A~~~f~~~~----~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~--~p~~~t~~~ll~~~~~~~~~ 132 (488)
++++|+.-|++.. ++. -.+.-.+|..+.+.|++++.+..|.+|+. ..+ .-+..+.++++.-.+...+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 4555555555443 111 22344567777888888888887777743 111 12455667777766666666
Q ss_pred HHHHHHHHHHHHc----C-CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccC--------C-------HHHHHHHHHHH
Q 036287 133 ELGRWIHSYMGKH----R-IDLNHIVGGALINMYSRCGDIDKALQVFEEMKER--------D-------VTTYNSLIAGL 192 (488)
Q Consensus 133 ~~a~~~~~~~~~~----g-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--------~-------~~~~~~li~~~ 192 (488)
+.-..+++.-.+. . -..--.+-..|...|...|.+.+-.++++++.+. | ...|..-|..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 6666655543221 1 0011122345778888888888888888877631 1 24577778888
Q ss_pred HhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHh-----ccCCHHHHHHHHHhcccccCcc--cC---hhhHHHHHH
Q 036287 193 AMHGRSIEAVEMFREMINQG-IRPTKVTFVGVLNACS-----HGGLVDLGFEIFQSMTRDYGIE--PQ---IEHYGCIVD 261 (488)
Q Consensus 193 ~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~~--p~---~~~~~~li~ 261 (488)
....+-..-..+|++...-. .-|.+ ....++.-|. +.|.+++|-.=|-..-+.+.-. |. ---|-.|..
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLAN 280 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLAN 280 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHH
Confidence 88888888888888776532 23433 3445566664 4578887765444443333322 22 223556667
Q ss_pred HHHhcCChHHHHHHHHh--C-CC--CCCHHHHHHHHHHHHHhCChhHHHHHHH
Q 036287 262 LLSRVGRPEEAYDFITN--M-KI--APDHIMLGSLLSACKIHGKLQLGEQIAK 309 (488)
Q Consensus 262 ~~~~~g~~~~A~~~~~~--m-~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 309 (488)
++.+.|-- -|+. . |. .|.....+.|+.+|.. ++..+-+++++
T Consensus 281 MLmkS~iN-----PFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~ 327 (440)
T KOG1464|consen 281 MLMKSGIN-----PFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILK 327 (440)
T ss_pred HHHHcCCC-----CCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 77666521 1111 1 33 3446667788888854 34444444443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=84.95 E-value=0.73 Score=37.66 Aligned_cols=49 Identities=8% Similarity=0.140 Sum_probs=19.9
Q ss_pred HHHHHhcCCHHHHHHHHHhccc----CCHHHHHHHHHHHHhcCChhHHHHHHH
Q 036287 158 INMYSRCGDIDKALQVFEEMKE----RDVTTYNSLIAGLAMHGRSIEAVEMFR 206 (488)
Q Consensus 158 i~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~ 206 (488)
++.+.+.+.++....+++.+.. .+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3334444444444444443331 223344444444444444444444443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.87 E-value=7.8 Score=35.71 Aligned_cols=96 Identities=15% Similarity=0.198 Sum_probs=68.0
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc-C--------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 036287 146 RIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE-R--------DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPT 216 (488)
Q Consensus 146 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 216 (488)
|.+....+...++..-....+++++...+-++.. + ...+|--++. .=++++++.++..=++.|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence 4444555556666666667788888877766653 2 2233333332 3467788888888888899999
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHhccc
Q 036287 217 KVTFVGVLNACSHGGLVDLGFEIFQSMTR 245 (488)
Q Consensus 217 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 245 (488)
.++++.+++.+.+.++...|.++.-.|..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999998888887766654
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.68 E-value=10 Score=32.78 Aligned_cols=72 Identities=11% Similarity=0.028 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHc---CCCCcHhHHHHHHHHHHhcCCHHHH
Q 036287 98 ARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKH---RIDLNHIVGGALINMYSRCGDIDKA 170 (488)
Q Consensus 98 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~y~~~g~~~~A 170 (488)
++|++.|-++...+.--++.....+.. |....+.+++++++-.+.+. +-.+|+.++.+|++.|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 445555555555443333333323322 22344555555555544432 1234455555555555555555554
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=84.54 E-value=43 Score=32.85 Aligned_cols=323 Identities=12% Similarity=0.089 Sum_probs=166.0
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHhhCCCC----C---ceeeHHHHHHHHHHcCCHHH--------HHHHHh-----
Q 036287 15 RSNRSTRLKLVELYGKCGEFKDAMQLFDEMPEC----N---DVVASTVMINCYVEHGLVEN--------AFEVFS----- 74 (488)
Q Consensus 15 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~----~---~~~~~~~li~~~~~~g~~~~--------A~~~f~----- 74 (488)
-+|...-+..+..+.+.|++.+++.+++++..+ . +..+|+.++-.+++.=-++- +-+.++
T Consensus 125 ~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY 204 (549)
T PF07079_consen 125 FSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFY 204 (549)
T ss_pred hhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHH
Confidence 456677788889999999999999988887552 1 57778776555543321111 111111
Q ss_pred --hcCCCCHH---------HHHHHH-HHHHHc--CCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCchHHHHHHH
Q 036287 75 --RVKVKDTV---------CWTAMI-DGLVRN--GEMARALDLFREMQRDNVRPNEVT-IVCVLSACSQLGALELGRWIH 139 (488)
Q Consensus 75 --~~~~~~~~---------~~~~li-~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~ 139 (488)
+|...|.. ..+.+| ....-- .+..--.++++.....-+.|+... ...+...+.. +.+++..+-
T Consensus 205 ~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~c 282 (549)
T PF07079_consen 205 LKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFC 282 (549)
T ss_pred HHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHH
Confidence 11111111 111111 111100 011111222222233334555332 2233333332 555555554
Q ss_pred HHHHHcCCC----CcHhHHHHHHHHHHhcCCHHHHHHHHHhcc--cCCHHH-------HHHHHHHHH----hcCChhHHH
Q 036287 140 SYMGKHRID----LNHIVGGALINMYSRCGDIDKALQVFEEMK--ERDVTT-------YNSLIAGLA----MHGRSIEAV 202 (488)
Q Consensus 140 ~~~~~~g~~----~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~-------~~~li~~~~----~~g~~~~A~ 202 (488)
+.+....+. .-...+..++....+.++...|.+.+.-+. +|+... -..+-+..+ ..-+..+-+
T Consensus 283 e~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL 362 (549)
T PF07079_consen 283 EAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYL 362 (549)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHH
Confidence 444333211 123456667777778888888877766554 232211 011111111 122334445
Q ss_pred HHHHHHHHcCCCCCHHH-HHHHHH---HHhccCC-HHHHHHHHHhcccccCccc-ChhhHHH----HHHHHHhc---CCh
Q 036287 203 EMFREMINQGIRPTKVT-FVGVLN---ACSHGGL-VDLGFEIFQSMTRDYGIEP-QIEHYGC----IVDLLSRV---GRP 269 (488)
Q Consensus 203 ~l~~~m~~~g~~p~~~t-~~~ll~---a~~~~g~-~~~a~~~~~~~~~~~~~~p-~~~~~~~----li~~~~~~---g~~ 269 (488)
.+|+......+ |..- ...++. -+-+.|. -++|..+++.+.+ +.| |...-|. +=..|.++ ..+
T Consensus 363 ~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~ 437 (549)
T PF07079_consen 363 NLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAI 437 (549)
T ss_pred HHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 56666555432 2211 112222 1333344 7888888887763 222 2222222 22233322 112
Q ss_pred H---HHHHHHHhCCCCCC----HHHHHHHHHH--HHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHH
Q 036287 270 E---EAYDFITNMKIAPD----HIMLGSLLSA--CKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQ 340 (488)
Q Consensus 270 ~---~A~~~~~~m~~~p~----~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 340 (488)
. +-..++++.++.|- ...-|-|..| +..+|++.++.-.-.-+.+..| ++.+|..++-+.....++++|..
T Consensus 438 ~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~ 516 (549)
T PF07079_consen 438 PRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWE 516 (549)
T ss_pred HHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHH
Confidence 2 23445555566663 3444555444 4678999999988888888888 88999999999999999999999
Q ss_pred HHHHH
Q 036287 341 IRAKM 345 (488)
Q Consensus 341 ~~~~m 345 (488)
++..+
T Consensus 517 ~l~~L 521 (549)
T PF07079_consen 517 YLQKL 521 (549)
T ss_pred HHHhC
Confidence 98764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.18 E-value=4.2 Score=30.62 Aligned_cols=60 Identities=18% Similarity=0.302 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHH
Q 036287 200 EAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVD 261 (488)
Q Consensus 200 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 261 (488)
+..+-++.+....+.|+.....+.|.||.+.+++..|.++|+.+..+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 5555666666667788888888888888888888888888888875433 33336665554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=84.06 E-value=11 Score=31.97 Aligned_cols=44 Identities=9% Similarity=0.177 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCCc
Q 036287 301 LQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQ 351 (488)
Q Consensus 301 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 351 (488)
+++|...|+++.+.+|.| ..|..-+.+. ++|-++..++.+.+..
T Consensus 96 F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNN-ELYRKSLEMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHH------HTHHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCc-HHHHHHHHHH------HhhHHHHHHHHHHHhh
Confidence 577888888888899988 5777766665 4577888888777654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.88 E-value=52 Score=33.35 Aligned_cols=178 Identities=12% Similarity=0.115 Sum_probs=95.8
Q ss_pred ceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036287 49 DVVASTVMINCYVEHGLVENAFEVFSRVKVKD---TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSA 125 (488)
Q Consensus 49 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 125 (488)
+..+|..-+.--.+.|+.+.+.-+|++...|- ...|--.+.-....|+.+-|-.++....+--++-.+.+-..-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 45677777777777888888888887776442 234555555444557777777666665554333233332222233
Q ss_pred HHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH---HHHHhccc--CCHHHHHHHHHH-----HHhc
Q 036287 126 CSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKAL---QVFEEMKE--RDVTTYNSLIAG-----LAMH 195 (488)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~---~~~~~~~~--~~~~~~~~li~~-----~~~~ 195 (488)
+-..|++..|..+++.+...- +.-+.+-..-+.+-.+.|+.+.+. .++....+ .+....+.+..- +.-.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 345567777777777776654 222333333455566667776666 22222221 122222222221 2224
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 036287 196 GRSIEAVEMFREMINQGIRPTKVTFVGVLNACS 228 (488)
Q Consensus 196 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 228 (488)
++.+.|..++.++.+. ++++...|..++..+.
T Consensus 455 ~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 455 EDADLARIILLEANDI-LPDCKVLYLELIRFEL 486 (577)
T ss_pred cCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHH
Confidence 5666666666666654 4555555555555433
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.81 E-value=2.9 Score=25.21 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036287 183 TTYNSLIAGLAMHGRSIEAVEMFREMIN 210 (488)
Q Consensus 183 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 210 (488)
.+++.+...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566777777777777777777776654
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=83.80 E-value=1.6 Score=23.57 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=17.6
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHH
Q 036287 320 GTYVLLSNAYASSGKWKEAVQIRA 343 (488)
Q Consensus 320 ~~~~~l~~~~~~~g~~~~a~~~~~ 343 (488)
.+...+..++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345667778888888888877765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=83.36 E-value=10 Score=28.36 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 036287 99 RALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMG 143 (488)
Q Consensus 99 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 143 (488)
++.+-++.+...++.|++....+.++||-+.+++..|.++++-+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 455556666667788888888888888888888888888888776
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.17 E-value=33 Score=30.47 Aligned_cols=22 Identities=5% Similarity=-0.064 Sum_probs=16.6
Q ss_pred HHhCChhHHHHHHHHHHhcCCC
Q 036287 296 KIHGKLQLGEQIAKRLLDCRSA 317 (488)
Q Consensus 296 ~~~g~~~~a~~~~~~~~~~~p~ 317 (488)
...+++.+|+++|+++....-+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 5567889999999998775433
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=82.78 E-value=2.8 Score=38.93 Aligned_cols=93 Identities=8% Similarity=-0.038 Sum_probs=67.7
Q ss_pred HHHhccCCHHHHHHHHHhcccccCccc-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCh
Q 036287 225 NACSHGGLVDLGFEIFQSMTRDYGIEP-QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKL 301 (488)
Q Consensus 225 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 301 (488)
+-|.+.|.+++|...|.... .+.| ++.++..-..+|.+..++..|+.-.... .+.. =...|..=+.+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 45888999999999998877 4456 7888888889999999998887655543 1110 023344444444556788
Q ss_pred hHHHHHHHHHHhcCCCCch
Q 036287 302 QLGEQIAKRLLDCRSADSG 320 (488)
Q Consensus 302 ~~a~~~~~~~~~~~p~~~~ 320 (488)
++|.+-++..+++.|.+..
T Consensus 182 ~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHHHhHHHHHhhCcccHH
Confidence 9999999999999998643
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=82.71 E-value=6.8 Score=38.21 Aligned_cols=121 Identities=20% Similarity=0.212 Sum_probs=82.5
Q ss_pred HhcCChhHHH-HHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHH
Q 036287 193 AMHGRSIEAV-EMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEE 271 (488)
Q Consensus 193 ~~~g~~~~A~-~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 271 (488)
...|+...|- ++|..+....-.|+.+-..+. ...+.|+++.+.+.+..... -+.....+..+++....+.|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHH
Confidence 3456666555 455555554445555544333 35788999999998887763 445567788889999999999999
Q ss_pred HHHHHHhC---CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC
Q 036287 272 AYDFITNM---KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD 318 (488)
Q Consensus 272 A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 318 (488)
|..+-..| .++ +..+...........|-++++...++++..++|+.
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 99988877 222 33344434444556677889999999988877553
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=82.65 E-value=15 Score=33.64 Aligned_cols=113 Identities=10% Similarity=0.122 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhc--cCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHH
Q 036287 198 SIEAVEMFREMIN-QGIRPTKVTFVGVLNACSH--GGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYD 274 (488)
Q Consensus 198 ~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 274 (488)
..+|+++|+.... ..+--|..+...++..... ......-.++.+.+...++-.++..+....+..++..+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Q ss_pred HHHhC----CCCCCHHHHHHHHHHHHHhCChhHHHHHHHH
Q 036287 275 FITNM----KIAPDHIMLGSLLSACKIHGKLQLGEQIAKR 310 (488)
Q Consensus 275 ~~~~m----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 310 (488)
+.+.. ....|...|..+|......|+.....++...
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=82.40 E-value=9 Score=28.89 Aligned_cols=49 Identities=16% Similarity=0.323 Sum_probs=32.1
Q ss_pred hCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHH
Q 036287 278 NMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLS 326 (488)
Q Consensus 278 ~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 326 (488)
.+.+-|++.+..+.|.+|++.+++..|.++++-+...-.+....|..++
T Consensus 38 ~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 38 GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 3467788888889999999999999999998888764333333555544
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.34 E-value=26 Score=28.68 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=10.2
Q ss_pred HHhcCCHHHHHHHHHhccc
Q 036287 161 YSRCGDIDKALQVFEEMKE 179 (488)
Q Consensus 161 y~~~g~~~~A~~~~~~~~~ 179 (488)
+...|++++|..+|+++.+
T Consensus 54 ~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 54 LIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHcCCHHHHHHHHHhhhc
Confidence 4445555555555555554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=82.20 E-value=3.1 Score=23.50 Aligned_cols=27 Identities=15% Similarity=0.098 Sum_probs=14.7
Q ss_pred HHHHHHHhCChhHHHHHHHHHHhcCCC
Q 036287 291 LLSACKIHGKLQLGEQIAKRLLDCRSA 317 (488)
Q Consensus 291 ll~~~~~~g~~~~a~~~~~~~~~~~p~ 317 (488)
+..++...|+.++|...++++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344445555566666666655555543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.06 E-value=15 Score=31.59 Aligned_cols=89 Identities=15% Similarity=0.091 Sum_probs=45.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 036287 89 DGLVRNGEMARALDLFREMQRDNVRPNEV-----TIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSR 163 (488)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 163 (488)
.-+.++|++++|..-|.+.+.. +++... .|..-..+..+++.++.|..--...++.+.. .......-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 4466778888888888777765 233222 2222333445566666666655555554411 11111222344555
Q ss_pred cCCHHHHHHHHHhccc
Q 036287 164 CGDIDKALQVFEEMKE 179 (488)
Q Consensus 164 ~g~~~~A~~~~~~~~~ 179 (488)
...+++|+.-|.++.+
T Consensus 181 ~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILE 196 (271)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 5555555555555444
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=80.49 E-value=32 Score=28.57 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=8.2
Q ss_pred HHhcCCHHHHHHHHHhcc
Q 036287 161 YSRCGDIDKALQVFEEMK 178 (488)
Q Consensus 161 y~~~g~~~~A~~~~~~~~ 178 (488)
+...|++++|..+|+++.
T Consensus 54 ~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHhCCHHHHHHHHHHHh
Confidence 334444444444444443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.16 E-value=38 Score=29.17 Aligned_cols=114 Identities=13% Similarity=0.080 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCchHHHHHHHHHHHHcCCCCc--HhHHHHHHHHHHhcCCHHHHHHHH
Q 036287 99 RALDLFREMQRDNVRPNEVTIV--CVLSACSQLGALELGRWIHSYMGKHRIDLN--HIVGGALINMYSRCGDIDKALQVF 174 (488)
Q Consensus 99 ~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~ 174 (488)
+......++....-...-.++. .+...+...++++.|...++.....-.+.+ ..+--.|.......|.+|+|.+.+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4455555555542111111222 234456777888888888877765422211 122233556677788888888888
Q ss_pred HhcccCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 036287 175 EEMKERDVTT--YNSLIAGLAMHGRSIEAVEMFREMINQG 212 (488)
Q Consensus 175 ~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g 212 (488)
+....++-.+ ...-.+.+...|+-++|..-|.+.++.+
T Consensus 150 ~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 150 DTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 8877765444 3334456888888888888888888764
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=80.08 E-value=3.7 Score=22.26 Aligned_cols=29 Identities=17% Similarity=0.082 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHhcCC
Q 036287 288 LGSLLSACKIHGKLQLGEQIAKRLLDCRS 316 (488)
Q Consensus 288 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 316 (488)
|..+...+...++++.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 33444445555555555555555554443
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 488 | ||||
| 4g24_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 3e-05 |
| >pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 74.9 bits (182), Expect = 3e-14
Identities = 23/192 (11%), Positives = 55/192 (28%), Gaps = 7/192 (3%)
Query: 100 ALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALIN 159
A L ++ P E + +L +L++ + + ++ A
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 160 MYSRCGDIDKALQVFEEMKER-------DVTTYNSLIAGLAMHGRSIEAVEMFREMINQG 212
+ A + + + YN+++ G A G E V + + + G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 213 IRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEA 272
+ P +++ L E G++ Q ++ R +
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 273 YDFITNMKIAPD 284
+ + P
Sbjct: 256 HKVKPTFSLPPQ 267
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.4 bits (142), Expect = 2e-09
Identities = 13/131 (9%), Positives = 36/131 (27%), Gaps = 8/131 (6%)
Query: 56 MINCYVEHGLVENAFEVFSRVK-------VKDTVCWTAMIDGLVRNGEMARALDLFREMQ 108
C + + A + + + A++ G R G + + ++
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 109 RDNVRPNEVTIVCVLSACSQLG-ALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDI 167
+ P+ ++ L + M + + L + L++ R +
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL 252
Query: 168 DKALQVFEEMK 178
+V
Sbjct: 253 KAVHKVKPTFS 263
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 44.0 bits (102), Expect = 1e-04
Identities = 18/118 (15%), Positives = 37/118 (31%), Gaps = 7/118 (5%)
Query: 241 QSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM---KIAPDHIMLGSLLSACKI 297
+ TR P E ++ + +++ L + C +
Sbjct: 80 EDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLL 139
Query: 298 HGKLQLGEQIAKRLLDCRSADSGTYVLLSN----AYASSGKWKEAVQIRAKMKEAGVQ 351
+L L + R + + N +A G +KE V + +K+AG+
Sbjct: 140 TDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT 197
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 54.4 bits (130), Expect = 2e-08
Identities = 30/207 (14%), Positives = 62/207 (29%), Gaps = 16/207 (7%)
Query: 161 YSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTF 220
Y L + ++ LA H R V +++ + T TF
Sbjct: 44 YLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTF 103
Query: 221 VGVL-NACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM 279
+ + + + D +E V +L ++ R + A + M
Sbjct: 104 LLMAASIYFYDQNPDAALRTLHQGD-------SLECMAMTVQILLKLDRLDLARKELKKM 156
Query: 280 -KIAPDHIMLGSLLSACKIH---GKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKW 335
D + + + KLQ I + + D S + + + G+W
Sbjct: 157 QDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRW 216
Query: 336 KEAVQIRAKMKEAGVQKEPGCSSIEVN 362
+ A + + + K+ G +N
Sbjct: 217 EAAEGVLQEA----LDKDSGHPETLIN 239
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 48.6 bits (115), Expect = 2e-06
Identities = 37/260 (14%), Positives = 76/260 (29%), Gaps = 21/260 (8%)
Query: 92 VRN----GEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRI 147
V+N G + ++ + ++ + P V + L + G +
Sbjct: 6 VKNAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAP 63
Query: 148 DLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNS---LIAG--LAMHGRSIEAV 202
+L + + D + + R V N+ L+A A+
Sbjct: 64 ELQAV--RMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAAL 121
Query: 203 EMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDL 262
+ + V +DL + + M + V L
Sbjct: 122 RTLHQGDSLECMAMTV------QILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSL 175
Query: 263 LSRVGRPEEAYDFITNM-KIAPDHIMLGSLLSACKIH-GKLQLGEQIAKRLLDCRSADSG 320
+ + ++AY M ++L + +AC + G+ + E + + LD S
Sbjct: 176 AAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE 235
Query: 321 TYVLLSNAYASSGKWKEAVQ 340
T + L GK E
Sbjct: 236 TLINLVVLSQHLGKPPEVTN 255
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 3e-05
Identities = 47/320 (14%), Positives = 105/320 (32%), Gaps = 34/320 (10%)
Query: 32 GEFKDAMQLFDEMPECNDVVASTVMI-NCYVEHGLVENAFEVFSRVKV--KDTVCWTAMI 88
++K A + +++ + + Y G A + ++ + + + C
Sbjct: 98 QQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAA 157
Query: 89 DGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRID 148
LV+ + AL+L E Q G ++L + G
Sbjct: 158 FCLVKLYDWQGALNLLGETNPFRKDEKNA-----NKLLMQDGGIKLEASMCYLRG----- 207
Query: 149 LNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTT---YNSLIAGLAMHGRSIEAVEM- 204
+Y+ + D+A + ++E D ++ L++ + + +
Sbjct: 208 ----------QVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLK 257
Query: 205 --FREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDL 262
+ + + ++ LN SH + + S+ G+E + C D
Sbjct: 258 LNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI---NGLEKSSDLLLCKADT 314
Query: 263 LSRVGRPEEAYDFITN-MKIAPDHIMLGSLLSACKIH-GKLQLGEQIAKRLLDCRSADSG 320
L R + T ++I P ++ + L A G+ I+ L+D +
Sbjct: 315 LFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAV 374
Query: 321 TYVLLSNAYASSGKWKEAVQ 340
T++ + Y K EA +
Sbjct: 375 TWLAVGIYYLCVNKISEARR 394
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 1e-04
Identities = 37/265 (13%), Positives = 87/265 (32%), Gaps = 62/265 (23%)
Query: 235 LGFEIFQSMTRDYG------IEPQIEHYGC--IVDLLSRVGRPEEAYDFITNMKIAPDHI 286
+ FE + Y + ++++ C + D+ + EE D I D +
Sbjct: 7 MDFETGE-HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE-IDHIIMS---KDAV 61
Query: 287 -----MLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQI 341
+ +LLS E++ ++ ++ Y L + E Q
Sbjct: 62 SGTLRLFWTLLSK---------QEEMVQKFVE--EVLRINYKFLMSPIK-----TEQRQP 105
Query: 342 RAKMKEAGVQKEPGCSSIEVNNEIHEFILGDI-RHPQREQIYKKMQELKQIVKLEGYSPS 400
+ Q++ + N+ F ++ R ++ + + EL+ P+
Sbjct: 106 SMMTRMYIEQRDR------LYNDNQVFAKYNVSRLQPYLKLRQALLELR---------PA 150
Query: 401 TEVVLHDIEDWEKEW--ALAIHSERLAICYGL----IS----TKPYTTIRVVKNL--RVC 448
V++ + K W S ++ ++ P T + +++ L ++
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 449 NDCHSMIKLIANITKRKIIVRDRNR 473
+ S +NI R ++ R
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELR 235
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 35/338 (10%), Positives = 82/338 (24%), Gaps = 43/338 (12%)
Query: 27 LYGKCGEFKDAMQLFDEMPECN--DVVASTVMINCYVEHGLVENAFEVFSRV---KVKDT 81
+ + + + VVA V+ V + +
Sbjct: 149 GKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQV 208
Query: 82 VCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGAL--ELGRW-- 137
V + G + R L + + P +V A + G L
Sbjct: 209 VAIASNGGGKQALETVQRLLPVLCQAHGLT--PQQV------VAIASNGGGKQALETVQR 260
Query: 138 -IHSYMGKHRIDLNHIVGGALINM---YSRCGDIDKALQVFE---EMKERDVTTYNSLIA 190
+ H + +V A+ + + + L V + + V S
Sbjct: 261 LLPVLCQAHGLTPQQVV--AIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGG 318
Query: 191 GLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGG-LVDLG--FEIFQSMTRDY 247
G + + + G+ P +V + SH G L + + + +
Sbjct: 319 GKQALETVQRLLPVLCQAH--GLTPQQVVAI-----ASHDGGKQALETVQRLLPVLCQAH 371
Query: 248 GIEP-QIEHYGCIVDLLSRVGRPEEA-YDFITNMKIAPDHIM-LGSLLSACKIHGKLQLG 304
G+ P Q+ + + + P+ ++ + S + +Q
Sbjct: 372 GLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQ-- 429
Query: 305 EQIA--KRLLDCRSADSGTYVLLSNAYASSGKWKEAVQ 340
+ + + +
Sbjct: 430 RLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLS 467
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 4e-04
Identities = 46/262 (17%), Positives = 85/262 (32%), Gaps = 58/262 (22%)
Query: 91 LVRNGEMARALDLFREMQRDNVRPNEVTIVCVL-SACSQLGALELGRWIHSYMGKHRIDL 149
+ G+ A ++ R P+ ++ +L S Q L+ H I
Sbjct: 9 EYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRS--AHFS--TLAIKQ 62
Query: 150 NHIVGGALINM---YSRCGDIDKALQVFE---EMKERDVTTYNSLIAGLAMHGRSIEAVE 203
N ++ A N+ Y G + +A++ + +K + Y +L A L G AV+
Sbjct: 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122
Query: 204 MFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLL 263
+ + P C L G LL
Sbjct: 123 AYVSALQ--YNPD--------LYCVRSDL---------------GN------------LL 145
Query: 264 SRVGRPEEAY-DFITNMKIAPD----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD 318
+GR EEA ++ ++ P+ LG + +A G++ L ++ +
Sbjct: 146 KALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA---QGEIWLAIHHFEKAVTLDPNF 202
Query: 319 SGTYVLLSNAYASSGKWKEAVQ 340
Y+ L N + + AV
Sbjct: 203 LDAYINLGNVLKEARIFDRAVA 224
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 488 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.82 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.79 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.77 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.75 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.72 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.7 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.69 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.67 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.67 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.64 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.64 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.62 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.61 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.6 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.59 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.59 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.58 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.58 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.58 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.58 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.58 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.57 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.57 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.56 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.56 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.56 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.55 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.55 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.55 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.54 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.54 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.51 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.51 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.48 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.48 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.48 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.47 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.46 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.45 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.43 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.42 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.42 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.42 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.4 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.4 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.36 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.35 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.34 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.34 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.31 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.28 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.26 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.26 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.26 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.21 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.2 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.17 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.17 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.15 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.12 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.11 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.1 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.09 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.06 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.05 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.03 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.0 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.0 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.97 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.97 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.97 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.96 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.91 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.91 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.91 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.9 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.88 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.88 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.86 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.84 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.83 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.83 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.81 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.79 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.78 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.77 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.77 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.72 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.71 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.7 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.69 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.68 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.68 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.66 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.65 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.63 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.63 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.63 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.6 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.59 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.57 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.57 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.57 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.56 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.55 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.51 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.51 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.5 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.49 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.49 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.49 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.49 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.48 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.48 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.47 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.47 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.47 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.45 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.44 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.43 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.43 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.39 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.38 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.36 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.36 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.35 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.35 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.35 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.34 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.34 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.34 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.32 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.31 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.31 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.29 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.29 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.27 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.25 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.21 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.21 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.2 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.18 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.17 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.16 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.15 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.15 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.14 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.13 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.13 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.11 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.09 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.08 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.08 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.07 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.06 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.05 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.04 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.99 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.97 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.92 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.91 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.9 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.87 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.85 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.83 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.83 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.78 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.77 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.76 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.75 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.73 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.73 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.63 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.55 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.5 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.5 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.46 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.42 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.4 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.39 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.32 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.31 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.17 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.16 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.1 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.04 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.98 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.95 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.93 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.91 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.89 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.75 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.71 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.49 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.49 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.36 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.22 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.07 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.97 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.85 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.75 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.95 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.66 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.49 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.43 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.19 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.92 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.47 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.46 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.19 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 91.98 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.91 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 91.61 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 91.43 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 89.82 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 89.46 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.05 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 87.98 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 87.84 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 87.22 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 86.7 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.51 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 85.2 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 85.15 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 85.13 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 84.96 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 84.47 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 84.12 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 83.78 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 82.71 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 82.66 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 81.17 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 80.19 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-32 Score=278.50 Aligned_cols=342 Identities=11% Similarity=0.023 Sum_probs=272.9
Q ss_pred HhHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC-CCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCC-
Q 036287 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE-CNDVVASTVMINCYVEHGLVENAFEVFSRVKVK- 79 (488)
Q Consensus 2 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~- 79 (488)
|.+++..+++ ..|+..++..++.+|.+.|++++|..+|+.+.. ++++.+|+.++.+|.++|++++|.++|+++.+.
T Consensus 103 A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 180 (597)
T 2xpi_A 103 AAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFR 180 (597)
T ss_dssp HHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC
T ss_pred HHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcc
Confidence 4456666653 345667777777777777777777777777643 234677777777777777777777777754332
Q ss_pred ------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----------------------------
Q 036287 80 ------------------DTVCWTAMIDGLVRNGEMARALDLFREMQRDNV----------------------------- 112 (488)
Q Consensus 80 ------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----------------------------- 112 (488)
+..+|+.++.+|.+.|++++|+++|++|.+.+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 260 (597)
T 2xpi_A 181 KDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNY 260 (597)
T ss_dssp ----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCT
T ss_pred ccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCC
Confidence 366777777777777777777777777654321
Q ss_pred -----------------------------------------CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCC----
Q 036287 113 -----------------------------------------RPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRI---- 147 (488)
Q Consensus 113 -----------------------------------------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---- 147 (488)
+++..++..++.++.+.|++++|.++++.+.+.+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 340 (597)
T 2xpi_A 261 STYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLD 340 (597)
T ss_dssp HHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCT
T ss_pred cccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHH
Confidence 15666667777777777777777777777765431
Q ss_pred -----------------------------CCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhc
Q 036287 148 -----------------------------DLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMH 195 (488)
Q Consensus 148 -----------------------------~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 195 (488)
+.+..+++.++.+|.++|++++|.++|+++.+ .+..+|+.++.+|.+.
T Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 420 (597)
T 2xpi_A 341 VYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIE 420 (597)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34577888899999999999999999998764 4678999999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHH
Q 036287 196 GRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDF 275 (488)
Q Consensus 196 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 275 (488)
|++++|+++|+++.+.+ +++..++..++.+|.+.|++++|.++|+.+.+. .+.+..+|+.++.+|.+.|++++|.++
T Consensus 421 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 497 (597)
T 2xpi_A 421 GEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINH 497 (597)
T ss_dssp TCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999998863 457888999999999999999999999999853 244688999999999999999999999
Q ss_pred HHhC-------CCCCC--HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHH
Q 036287 276 ITNM-------KIAPD--HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMK 346 (488)
Q Consensus 276 ~~~m-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 346 (488)
|+++ +..|+ ..+|..++.+|...|++++|...++++.+.+|+++.+|..++.+|.+.|++++|.+.++++.
T Consensus 498 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 577 (597)
T 2xpi_A 498 FQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESL 577 (597)
T ss_dssp HHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9988 45777 78999999999999999999999999999999999999999999999999999999999997
Q ss_pred hC
Q 036287 347 EA 348 (488)
Q Consensus 347 ~~ 348 (488)
+.
T Consensus 578 ~~ 579 (597)
T 2xpi_A 578 AI 579 (597)
T ss_dssp HH
T ss_pred hc
Confidence 74
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-32 Score=280.17 Aligned_cols=374 Identities=10% Similarity=-0.006 Sum_probs=312.0
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHhhCCC-CCceeeHHHHHHHHHHcCCHHHHHHHHhhc--CCCCHHHHHHHHHHH
Q 036287 15 RSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE-CNDVVASTVMINCYVEHGLVENAFEVFSRV--KVKDTVCWTAMIDGL 91 (488)
Q Consensus 15 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~--~~~~~~~~~~li~~~ 91 (488)
.+++..++.++..|.+.|++++|..+|+++.. .++..+|..++.+|.+.|++++|..+|+.+ ..++..+|+.++.+|
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCL 160 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 36788899999999999999999999999865 223688999999999999999999999998 477899999999999
Q ss_pred HHcCCHHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHH--
Q 036287 92 VRNGEMARALDLFREMQRD---------------NVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVG-- 154 (488)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~---------------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-- 154 (488)
.+.|++++|+++|+++... +.+++..++..++.++.+.|++++|.++|+.+.+.+. .+...+
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~ 239 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQ 239 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHH
Confidence 9999999999999853221 2344688999999999999999999999999988752 233332
Q ss_pred ------------------------------------HHHHHHHHhcCCHHHHHHHHHhccc--CCHHHHHHHHHHHHhcC
Q 036287 155 ------------------------------------GALINMYSRCGDIDKALQVFEEMKE--RDVTTYNSLIAGLAMHG 196 (488)
Q Consensus 155 ------------------------------------~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g 196 (488)
+.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTT
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhc
Confidence 2336677889999999999999987 89999999999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHH
Q 036287 197 RSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFI 276 (488)
Q Consensus 197 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 276 (488)
++++|+++|+++.+.+ +.+..++..++.+|...|++++|..+++.+.+ ..+.+..+++.++.+|.+.|++++|.++|
T Consensus 320 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 320 RFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVD--RHPEKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 9999999999999864 34677889999999999999999999999984 33456889999999999999999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCCccCC
Q 036287 277 TNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEP 354 (488)
Q Consensus 277 ~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 354 (488)
+++ ...| +..+|+.++.++...|++++|..+++++.+..|++..+|..++.+|.+.|++++|.++|+++.+.... ++
T Consensus 397 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 475 (597)
T 2xpi_A 397 SKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DP 475 (597)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-Ch
Confidence 988 3344 58899999999999999999999999999999999999999999999999999999999999875322 11
Q ss_pred ceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCccCCC
Q 036287 355 GCSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKLEGYSPST 401 (488)
Q Consensus 355 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~ 401 (488)
..|..+ .......++.+++.+.++++.+...+.|..|+.
T Consensus 476 -~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~ 514 (597)
T 2xpi_A 476 -LLLNEL-------GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514 (597)
T ss_dssp -HHHHHH-------HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG
T ss_pred -HHHHHH-------HHHHHHhCCHHHHHHHHHHHHHhhhccccchhh
Confidence 112110 112224567777877666666655555778874
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=252.52 Aligned_cols=182 Identities=18% Similarity=0.221 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc---------hHHHHHHHHHHHHcCCCCcHhH
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGA---------LELGRWIHSYMGKHRIDLNHIV 153 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~~ 153 (488)
.++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|+..+. ++.|.++|++|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4666777777777777777777777777777777777777777765443 5667777777777777777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccc----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 036287 154 GGALINMYSRCGDIDKALQVFEEMKE----RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSH 229 (488)
Q Consensus 154 ~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 229 (488)
|++||++|++.|++++|.++|++|.+ ||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||++|+.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 77777777777777777777777763 57777777777777777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHh
Q 036287 230 GGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSR 265 (488)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 265 (488)
.|++++|.+++++|.+. +..|+..||+.++..|..
T Consensus 188 ~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 77777777777777754 777777777777777664
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-28 Score=242.18 Aligned_cols=200 Identities=13% Similarity=0.201 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC---------H
Q 036287 98 ARALDLFREMQRDNVRPNE-VTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGD---------I 167 (488)
Q Consensus 98 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---------~ 167 (488)
..+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3456667788777776654 46888999999999999999999999999999999999999999988764 7
Q ss_pred HHHHHHHHhccc----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhc
Q 036287 168 DKALQVFEEMKE----RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSM 243 (488)
Q Consensus 168 ~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 243 (488)
+.|.++|++|.. ||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|+.|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 899999999974 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHHh
Q 036287 244 TRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM---KIAPDHIMLGSLLSACKIH 298 (488)
Q Consensus 244 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~ 298 (488)
.+. |+.||..+|++||++|++.|++++|.+++++| +..|+..||+.++..|...
T Consensus 167 ~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 975 99999999999999999999999999999999 8899999999999988754
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=9e-26 Score=219.89 Aligned_cols=340 Identities=16% Similarity=0.129 Sum_probs=294.9
Q ss_pred HhHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC--
Q 036287 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK-- 77 (488)
Q Consensus 2 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~-- 77 (488)
|.+.+..+++.. +.+...+..+...+.+.|++++|...++.... +++..+|..+...|.+.|++++|.+.|+++.
T Consensus 18 A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 96 (388)
T 1w3b_A 18 AERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL 96 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 445666666654 34556677888899999999999999987655 4457899999999999999999999999875
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHH
Q 036287 78 -VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGA 156 (488)
Q Consensus 78 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 156 (488)
+.+..+|..+..++.+.|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.+..+.+.. +.+..++..
T Consensus 97 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 174 (388)
T 1w3b_A 97 KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSN 174 (388)
T ss_dssp CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 3456789999999999999999999999999864 3345667778888999999999999999999875 456788999
Q ss_pred HHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 036287 157 LINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLV 233 (488)
Q Consensus 157 li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 233 (488)
+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++..+.. +.+..++..+..++...|++
T Consensus 175 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 253 (388)
T 1w3b_A 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLI 253 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999874 456789999999999999999999999998852 33567888899999999999
Q ss_pred HHHHHHHHhcccccCccc-ChhhHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHhCChhHHHHHHHH
Q 036287 234 DLGFEIFQSMTRDYGIEP-QIEHYGCIVDLLSRVGRPEEAYDFITNM-K-IAPDHIMLGSLLSACKIHGKLQLGEQIAKR 310 (488)
Q Consensus 234 ~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 310 (488)
++|...|+.+.+. .| +...|..+...|.+.|++++|.+.++++ . .+++..+|..+...+...|++++|...+++
T Consensus 254 ~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (388)
T 1w3b_A 254 DLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK 330 (388)
T ss_dssp HHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999852 44 4678999999999999999999999998 3 334688999999999999999999999999
Q ss_pred HHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 311 LLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 311 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
+++..|++..++..++.+|.+.|++++|.+.++++.+.
T Consensus 331 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 331 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999763
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-24 Score=211.07 Aligned_cols=325 Identities=13% Similarity=0.082 Sum_probs=284.2
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC--CC
Q 036287 4 EIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK--VK 79 (488)
Q Consensus 4 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~ 79 (488)
..+...++.. +.+..++..+...|.+.|++++|...|+++.. +++..+|..+..++.+.|++++|.+.|+++. .|
T Consensus 54 ~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 132 (388)
T 1w3b_A 54 HFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT
T ss_pred HHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4444555543 56788999999999999999999999998865 4456789999999999999999999999875 33
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHH
Q 036287 80 -DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALI 158 (488)
Q Consensus 80 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 158 (488)
+...|..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|...++.+++.+ +.+...+..+.
T Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 210 (388)
T 1w3b_A 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLG 210 (388)
T ss_dssp TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 56688889999999999999999999998864 4467899999999999999999999999999876 45678899999
Q ss_pred HHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 036287 159 NMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDL 235 (488)
Q Consensus 159 ~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 235 (488)
..|...|++++|...|++... .+..+|..+...|...|++++|+..|+++.+.+ +.+..++..+..++...|++++
T Consensus 211 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 289 (388)
T 1w3b_A 211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAE 289 (388)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998764 467899999999999999999999999999853 3346788899999999999999
Q ss_pred HHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHh
Q 036287 236 GFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLD 313 (488)
Q Consensus 236 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 313 (488)
|...|+.+.+. .+.+..++..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++
T Consensus 290 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 290 AEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999853 3556889999999999999999999999998 5555 478999999999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHhcCCC
Q 036287 314 CRSADSGTYVLLSNAYASSGK 334 (488)
Q Consensus 314 ~~p~~~~~~~~l~~~~~~~g~ 334 (488)
..|.++.+|..+...+...|+
T Consensus 368 ~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 368 ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCTTCHHHHHHHHHHHHHTCC
T ss_pred hCCCCHHHHHhHHHHHHHccC
Confidence 999999999999998877664
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.4e-24 Score=211.30 Aligned_cols=323 Identities=15% Similarity=0.150 Sum_probs=275.5
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHH
Q 036287 15 RSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMID 89 (488)
Q Consensus 15 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~ 89 (488)
+.+...+..+...|.+.|++++|..+|+.+.. +++..+|..+..+|.+.|++++|...|+++. +.+..+|..+..
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 34677889999999999999999999998765 4468899999999999999999999999876 446889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHH------------HHHHHhcCchHHHHHHHHHHHHcCCCCcHhH
Q 036287 90 GLVRNGEMARALDLFREMQRDNVRPNE----VTIVCV------------LSACSQLGALELGRWIHSYMGKHRIDLNHIV 153 (488)
Q Consensus 90 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 153 (488)
.|.+.|++++|+..|+++.+.. |+. ..+..+ ...+...|++++|...+..+.+.. +.+..+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 9999999999999999999854 443 455544 444889999999999999999875 557888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH-HHHH------
Q 036287 154 GGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVT-FVGV------ 223 (488)
Q Consensus 154 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~l------ 223 (488)
+..+..+|.+.|++++|.++|+++.+ .+..+|..+...|...|++++|+..|+++.+. .|+... +..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHH
Confidence 99999999999999999999999864 57899999999999999999999999999974 454433 3333
Q ss_pred ------HHHHhccCCHHHHHHHHHhcccccCcccC-----hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHH
Q 036287 224 ------LNACSHGGLVDLGFEIFQSMTRDYGIEPQ-----IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGS 290 (488)
Q Consensus 224 ------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ 290 (488)
..+|.+.|++++|...|+.+.+. .|+ ..++..+..++.+.|++++|.+.++++ ...| +..+|..
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 334 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 78899999999999999999853 454 457899999999999999999999987 4445 6899999
Q ss_pred HHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHH------------HHHhcCC-----ChHHHHHHHHHH
Q 036287 291 LLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLS------------NAYASSG-----KWKEAVQIRAKM 345 (488)
Q Consensus 291 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~~~a~~~~~~m 345 (488)
+..+|...|++++|...++++++..|.++.++..+. +.|...| +.+++.+.++++
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 999999999999999999999999999999988888 4466566 455667766653
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-22 Score=198.46 Aligned_cols=295 Identities=13% Similarity=0.083 Sum_probs=257.0
Q ss_pred CceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036287 48 NDVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLS 124 (488)
Q Consensus 48 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 124 (488)
+++..|..+...|.+.|++++|..+|+++. +.+..+|..+..+|...|++++|+..|+++.+.+ +.+..++..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 367889999999999999999999999875 4578899999999999999999999999999875 456888999999
Q ss_pred HHHhcCchHHHHHHHHHHHHcCCCCcH---hHHHHH------------HHHHHhcCCHHHHHHHHHhccc---CCHHHHH
Q 036287 125 ACSQLGALELGRWIHSYMGKHRIDLNH---IVGGAL------------INMYSRCGDIDKALQVFEEMKE---RDVTTYN 186 (488)
Q Consensus 125 ~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~l------------i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~ 186 (488)
++...|++++|...++.+.+.. +.+. ..+..+ ...|.+.|++++|...|+++.+ .+...+.
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 181 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRE 181 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 9999999999999999999875 3344 555555 4459999999999999999764 4778999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHHHH------
Q 036287 187 SLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCI------ 259 (488)
Q Consensus 187 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l------ 259 (488)
.+...|.+.|++++|+..|+++.+. .+.+..++..+..++...|++++|...|+.+.+ +.|+ ...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKL-KNDNTEAFYKISTLYYQLGDHELSLSEVRECLK---LDQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHH-HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999875 245678899999999999999999999999984 3454 4444444
Q ss_pred ------HHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHH
Q 036287 260 ------VDLLSRVGRPEEAYDFITNM-KIAPD-----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSN 327 (488)
Q Consensus 260 ------i~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 327 (488)
...|.+.|++++|.+.|+++ ...|+ ...|..+...+...|++++|...++++++..|.++.+|..++.
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 78899999999999999998 44454 4578888999999999999999999999999999999999999
Q ss_pred HHhcCCChHHHHHHHHHHHhC
Q 036287 328 AYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 328 ~~~~~g~~~~a~~~~~~m~~~ 348 (488)
+|...|++++|.+.++++.+.
T Consensus 338 ~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhcCHHHHHHHHHHHHHh
Confidence 999999999999999999874
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-22 Score=202.57 Aligned_cols=340 Identities=8% Similarity=-0.059 Sum_probs=286.4
Q ss_pred HhHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCC
Q 036287 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVKVK 79 (488)
Q Consensus 2 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~ 79 (488)
|...+..+++.. |+..++..+...|.+.|++++|...|+++.+ +++..+|..+..+|.+.|++++|...|+++...
T Consensus 25 A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 102 (514)
T 2gw1_A 25 AIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLN 102 (514)
T ss_dssp HHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 567788888876 7899999999999999999999999998765 445778999999999999999999999876311
Q ss_pred ---C----------------------------------------------------------------------------
Q 036287 80 ---D---------------------------------------------------------------------------- 80 (488)
Q Consensus 80 ---~---------------------------------------------------------------------------- 80 (488)
+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (514)
T 2gw1_A 103 GDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDE 182 (514)
T ss_dssp SSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCS
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcC
Confidence 1
Q ss_pred ---HHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----CCCC--------CCHHHHHHHHHHHHhcCchHHHHHHHHH
Q 036287 81 ---TVCWTAMIDGLVR---NGEMARALDLFREMQR-----DNVR--------PNEVTIVCVLSACSQLGALELGRWIHSY 141 (488)
Q Consensus 81 ---~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 141 (488)
...|..+...+.. .|++++|+..|+++.+ ..-. .+..++..+...+...|++++|...+..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 262 (514)
T 2gw1_A 183 SNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKK 262 (514)
T ss_dssp SCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2333344444444 8999999999999987 3112 2346777888889999999999999999
Q ss_pred HHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 036287 142 MGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKV 218 (488)
Q Consensus 142 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 218 (488)
+.+.... ..++..+..+|...|++++|...|+++.+ .+..+|..+...|...|++++|+..|++..+.. +.+..
T Consensus 263 ~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 339 (514)
T 2gw1_A 263 AIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIF 339 (514)
T ss_dssp HHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSH
T ss_pred HHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHH
Confidence 9987644 88889999999999999999999998765 366789999999999999999999999999863 33567
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHH
Q 036287 219 TFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM----KIAPD----HIMLGS 290 (488)
Q Consensus 219 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ 290 (488)
.+..+...+...|++++|...+..+.+. .+.+...+..+...|.+.|++++|.+.++++ +..|+ ...|..
T Consensus 340 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 417 (514)
T 2gw1_A 340 PYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVG 417 (514)
T ss_dssp HHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHH
Confidence 7888899999999999999999998853 2335678889999999999999999999887 22222 448899
Q ss_pred HHHHHHH---hCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 291 LLSACKI---HGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 291 ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
+...+.. .|++++|...++++++..|.++.++..++.+|...|++++|.+.+++..+.
T Consensus 418 l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 418 KATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999 999999999999999999999999999999999999999999999998774
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.2e-21 Score=191.45 Aligned_cols=327 Identities=11% Similarity=-0.007 Sum_probs=273.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhCCC-CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHH
Q 036287 18 RSTRLKLVELYGKCGEFKDAMQLFDEMPE-CNDVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVR 93 (488)
Q Consensus 18 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~ 93 (488)
...+..+...|.+.|++++|...|+++.. .++..+|..+..+|.+.|++++|...|+++. +.+..+|..+..+|.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 34567788899999999999999999866 2358899999999999999999999999875 4467899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC----------------------------------------------------------
Q 036287 94 NGEMARALDLFREMQRDNVRPN---------------------------------------------------------- 115 (488)
Q Consensus 94 ~g~~~~A~~~~~~m~~~g~~p~---------------------------------------------------------- 115 (488)
.|++++|+..|+++.+.+. ++
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 9999999999999987642 11
Q ss_pred ---------------------HHHHHHHHHHHHh---cCchHHHHHHHHHHHH-----cCC--------CCcHhHHHHHH
Q 036287 116 ---------------------EVTIVCVLSACSQ---LGALELGRWIHSYMGK-----HRI--------DLNHIVGGALI 158 (488)
Q Consensus 116 ---------------------~~t~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~g~--------~~~~~~~~~li 158 (488)
...+......+.. .|++++|...+..+.+ ... +.+..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 2222233333333 7999999999999988 311 23456788899
Q ss_pred HHHHhcCCHHHHHHHHHhccc--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 036287 159 NMYSRCGDIDKALQVFEEMKE--RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLG 236 (488)
Q Consensus 159 ~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 236 (488)
..|...|++++|...|+++.+ |+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999998764 457789999999999999999999999998853 44567888889999999999999
Q ss_pred HHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhc
Q 036287 237 FEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDC 314 (488)
Q Consensus 237 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 314 (488)
...++.+.+. .+.+...+..+...|...|++++|.+.++++ ...| +..+|..+...+...|++++|...++++.+.
T Consensus 324 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 324 GKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999998852 2335678889999999999999999999987 3333 5678899999999999999999999999998
Q ss_pred CCCCch------hHHHHHHHHhc---CCChHHHHHHHHHHHhC
Q 036287 315 RSADSG------TYVLLSNAYAS---SGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 315 ~p~~~~------~~~~l~~~~~~---~g~~~~a~~~~~~m~~~ 348 (488)
.|.++. ++..++.+|.. .|++++|.+.++++.+.
T Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444 (514)
T ss_dssp HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence 877755 89999999999 99999999999998775
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.2e-20 Score=174.88 Aligned_cols=305 Identities=14% Similarity=0.127 Sum_probs=222.7
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHH
Q 036287 17 NRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGL 91 (488)
Q Consensus 17 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~ 91 (488)
|+..+..+...|.+.|++++|...|+.+.. +++..+|..+...|...|++++|...|++.. +.+..+|..+...|
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 456677888889999999999999988755 3457788888999999999999999998865 33677888899999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC----CHHHHHHH------------HHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHH
Q 036287 92 VRNGEMARALDLFREMQRDNVRP----NEVTIVCV------------LSACSQLGALELGRWIHSYMGKHRIDLNHIVGG 155 (488)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 155 (488)
...|++++|+..|+++.+.. | +...+..+ ...+...|++++|...+..+.+.. +.+..++.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 99999999999999988753 4 33344333 466778888888888888887765 45667777
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHH----------
Q 036287 156 ALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTK-VTFV---------- 221 (488)
Q Consensus 156 ~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~---------- 221 (488)
.+...|...|++++|...|+++.+ .+..+|..+...|...|++++|...|++..+. .|+. ..+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHH
Confidence 888888888888888888887664 45677888888888888888888888888764 2332 2221
Q ss_pred --HHHHHHhccCCHHHHHHHHHhcccccCcccCh-----hhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 036287 222 --GVLNACSHGGLVDLGFEIFQSMTRDYGIEPQI-----EHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLL 292 (488)
Q Consensus 222 --~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 292 (488)
.+...+...|++++|...++.+.+. .|+. ..+..+...|...|++++|.+.+++. ...| +..+|..+.
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 313 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 2244566777777777777777643 2331 23445667777777777777777766 3334 566777777
Q ss_pred HHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 036287 293 SACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAY 329 (488)
Q Consensus 293 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 329 (488)
..+...|++++|...++++++.+|.++..+..+..++
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 7777777777777777777777777766666655544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-19 Score=172.78 Aligned_cols=294 Identities=12% Similarity=0.054 Sum_probs=249.7
Q ss_pred eeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036287 50 VVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSAC 126 (488)
Q Consensus 50 ~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 126 (488)
+..|..+...+...|++++|...|+++. +.+..+|..+...+...|++++|+..|+++.+.. +.+...+..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 4567888999999999999999999875 4468899999999999999999999999998864 44678899999999
Q ss_pred HhcCchHHHHHHHHHHHHcCCC--CcHhHHHHH------------HHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHH
Q 036287 127 SQLGALELGRWIHSYMGKHRID--LNHIVGGAL------------INMYSRCGDIDKALQVFEEMKE---RDVTTYNSLI 189 (488)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~l------------i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li 189 (488)
...|++++|...+..+.+.... .+...+..+ ...|...|++++|.+.|+++.+ .+...|..+.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999987520 345555555 5889999999999999998764 4778899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHH-----------
Q 036287 190 AGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYG----------- 257 (488)
Q Consensus 190 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~----------- 257 (488)
..|...|++++|+..|++..+. .+.+..++..+...+...|++++|...++.+.+. .|+ ...+.
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHH
Confidence 9999999999999999999986 3456778888999999999999999999998853 343 33222
Q ss_pred -HHHHHHHhcCChHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 036287 258 -CIVDLLSRVGRPEEAYDFITNM-KIAPD-H----IMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYA 330 (488)
Q Consensus 258 -~li~~~~~~g~~~~A~~~~~~m-~~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 330 (488)
.+...+.+.|++++|.+.++++ ...|+ . ..+..+...+...|++++|...++++++..|.++.++..++.+|.
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3366789999999999999987 33344 3 335567788999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHhC
Q 036287 331 SSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 331 ~~g~~~~a~~~~~~m~~~ 348 (488)
..|++++|.+.+++..+.
T Consensus 318 ~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhc
Confidence 999999999999998764
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-19 Score=184.48 Aligned_cols=340 Identities=10% Similarity=-0.000 Sum_probs=264.1
Q ss_pred HhHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC-C
Q 036287 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK-V 78 (488)
Q Consensus 2 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~-~ 78 (488)
|...+..+++.. +.++.++..+...|.+.|++++|.+.|+++.+ +++..+|..+..+|...|++++|...|+.+. .
T Consensus 44 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 122 (537)
T 3fp2_A 44 AIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLN 122 (537)
T ss_dssp CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Confidence 456667777654 44677788888888888888888888887654 4457778888888888888888888775442 1
Q ss_pred CCHH---------------------------------------------------------------------HHHHHHH
Q 036287 79 KDTV---------------------------------------------------------------------CWTAMID 89 (488)
Q Consensus 79 ~~~~---------------------------------------------------------------------~~~~li~ 89 (488)
|+.. .+..+..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 202 (537)
T 3fp2_A 123 GDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQR 202 (537)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHH
Confidence 1100 1111111
Q ss_pred HHH--------HcCCHHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhH
Q 036287 90 GLV--------RNGEMARALDLFREMQRDNVRPN-E-------VTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIV 153 (488)
Q Consensus 90 ~~~--------~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 153 (488)
.+. ..|++++|+.+|+++.+.. |+ . .++..+...+...|++++|...+..+.+.. |+..+
T Consensus 203 ~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~ 278 (537)
T 3fp2_A 203 LYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNS 278 (537)
T ss_dssp HHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHH
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchH
Confidence 111 1146778888888887653 33 2 246666677888999999999999999875 44788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 036287 154 GGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHG 230 (488)
Q Consensus 154 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 230 (488)
+..+...|...|++++|...|+++.+ .+..+|..+...|...|++++|+..|++..+.. +.+...+..+..++...
T Consensus 279 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 357 (537)
T 3fp2_A 279 YIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQ 357 (537)
T ss_dssp HHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 88999999999999999999998764 467889999999999999999999999999853 33467788889999999
Q ss_pred CCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC----CCCC----CHHHHHHHHHHHHHh----
Q 036287 231 GLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM----KIAP----DHIMLGSLLSACKIH---- 298 (488)
Q Consensus 231 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p----~~~~~~~ll~~~~~~---- 298 (488)
|++++|...+..+.+. .+.+...+..+...|...|++++|.+.++++ +..+ ....+..+...+...
T Consensus 358 g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 435 (537)
T 3fp2_A 358 GKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQD 435 (537)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999853 2344678899999999999999999999986 1111 233345556677777
Q ss_pred ------CChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 299 ------GKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 299 ------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
|++++|...++++++..|.++.++..++.+|...|++++|.+.+++..+..
T Consensus 436 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 436 PTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred chhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999987743
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=9.7e-19 Score=165.49 Aligned_cols=284 Identities=12% Similarity=0.043 Sum_probs=190.9
Q ss_pred eeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036287 50 VVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSAC 126 (488)
Q Consensus 50 ~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 126 (488)
+..+..+...+...|++++|.++|+++. +.+...+..++..+...|++++|+.+++++.+.. +.+...+..+...+
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYY 100 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHH
Confidence 4555555666666666666666666553 2234455556666666666666666666666542 33455666666666
Q ss_pred HhcC-chHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHH
Q 036287 127 SQLG-ALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAV 202 (488)
Q Consensus 127 ~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 202 (488)
...| ++++|...+..+.+.. +.+...+..+..+|...|++++|...|+++.+ .+...+..+...|...|++++|+
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHH
Confidence 6666 6666666666666554 33455566666677777777777777666553 23455666666777777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhccccc-------CcccChhhHHHHHHHHHhcCChHHHHHH
Q 036287 203 EMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDY-------GIEPQIEHYGCIVDLLSRVGRPEEAYDF 275 (488)
Q Consensus 203 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-------~~~p~~~~~~~li~~~~~~g~~~~A~~~ 275 (488)
..|++..+.. +.+...+..+...+...|++++|...++.+.+.. ..+.....+..+...|.+.|++++|.+.
T Consensus 180 ~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 180 RFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 7777776642 3345566666667777777777777776665421 1133456888888899999999999998
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHH-hcCCChH
Q 036287 276 ITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAY-ASSGKWK 336 (488)
Q Consensus 276 ~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 336 (488)
+++. ...| +...|..+...+...|++++|...++++++..|.++.++..+..++ ...|+.+
T Consensus 259 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 259 HRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 8887 3333 5778888999999999999999999999999999988999998888 4556543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=4e-18 Score=161.21 Aligned_cols=286 Identities=14% Similarity=0.059 Sum_probs=240.2
Q ss_pred CCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHH
Q 036287 13 GLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAM 87 (488)
Q Consensus 13 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~l 87 (488)
+++.+..++..+...+...|++++|.++|+++.. +.+...+..++..+...|++++|..+|+++. +.+..+|..+
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 96 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAV 96 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 4566777888999999999999999999999765 3357788889999999999999999999875 4467899999
Q ss_pred HHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 036287 88 IDGLVRNG-EMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGD 166 (488)
Q Consensus 88 i~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 166 (488)
...+...| ++++|+..|++..+.. +.+...+..+...+...|++++|...+..+.+.. +.+...+..+...|...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 99999999 9999999999998864 4467889999999999999999999999999876 3456667779999999999
Q ss_pred HHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHhccCCHHH
Q 036287 167 IDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQG--------IRPTKVTFVGVLNACSHGGLVDL 235 (488)
Q Consensus 167 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--------~~p~~~t~~~ll~a~~~~g~~~~ 235 (488)
+++|...|++..+ .+...|..+...|...|++++|+..|++..+.. .+.+..++..+..++...|++++
T Consensus 175 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 175 SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999998775 467889999999999999999999999998742 13345788889999999999999
Q ss_pred HHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HHhCChh
Q 036287 236 GFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSAC-KIHGKLQ 302 (488)
Q Consensus 236 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~-~~~g~~~ 302 (488)
|...++.+.+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...+..+..++ ...|+.+
T Consensus 255 A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99999999853 2335788999999999999999999999998 6666 467777777766 4445543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4.7e-19 Score=170.64 Aligned_cols=281 Identities=11% Similarity=0.003 Sum_probs=211.0
Q ss_pred HHHcCCHHHHHH-HHhhcC---CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc
Q 036287 60 YVEHGLVENAFE-VFSRVK---VK----DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGA 131 (488)
Q Consensus 60 ~~~~g~~~~A~~-~f~~~~---~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 131 (488)
+.-.|++++|.. .|++.. +. +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344567777777 666543 11 24567777888888888888888888887764 4466777777788888888
Q ss_pred hHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHH---------------HHHHHH
Q 036287 132 LELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER---DVTTYNS---------------LIAGLA 193 (488)
Q Consensus 132 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~---------------li~~~~ 193 (488)
+++|...+..+.+.. +.+..++..+..+|...|++++|.+.|+++... +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 888888888887765 446777778888888888888888888776542 1122211 233344
Q ss_pred hcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHH
Q 036287 194 MHGRSIEAVEMFREMINQGIRP-TKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEA 272 (488)
Q Consensus 194 ~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 272 (488)
..|++++|+..|+++.+..... +..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 8899999999999998853221 4778888999999999999999999998853 233477899999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC-----------chhHHHHHHHHhcCCChHHHH
Q 036287 273 YDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD-----------SGTYVLLSNAYASSGKWKEAV 339 (488)
Q Consensus 273 ~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~ 339 (488)
.+.++++ ...| +..+|..+...+...|++++|...++++++..|.+ ..+|..++.+|...|++++|.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 9999987 4344 57889999999999999999999999999988776 789999999999999999999
Q ss_pred HHHHH
Q 036287 340 QIRAK 344 (488)
Q Consensus 340 ~~~~~ 344 (488)
.++++
T Consensus 351 ~~~~~ 355 (368)
T 1fch_A 351 AADAR 355 (368)
T ss_dssp HHHTT
T ss_pred HhHHH
Confidence 88763
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-18 Score=174.58 Aligned_cols=323 Identities=11% Similarity=0.056 Sum_probs=253.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHH
Q 036287 18 RSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLV 92 (488)
Q Consensus 18 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~ 92 (488)
...+..+...|.+.|++++|.+.|+++.. ++++.+|..+..+|.+.|++++|++.|+++. +.+..+|..+...|.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 45678888999999999999999999865 4468899999999999999999999999875 447889999999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcC------CCCcH---------------
Q 036287 93 RNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHR------IDLNH--------------- 151 (488)
Q Consensus 93 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g------~~~~~--------------- 151 (488)
..|++++|+..|+.+ .. .|+... ..+..+...+....+...+..+.+.. ..|+.
T Consensus 105 ~~g~~~~A~~~~~~~-~~--~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVL-SL--NGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHHHH-hc--CCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 999999999999643 32 233221 12334444555667777777765431 11111
Q ss_pred ---------------hHHHHHHHHHHhc--------CCHHHHHHHHHhcccC--C--------HHHHHHHHHHHHhcCCh
Q 036287 152 ---------------IVGGALINMYSRC--------GDIDKALQVFEEMKER--D--------VTTYNSLIAGLAMHGRS 198 (488)
Q Consensus 152 ---------------~~~~~li~~y~~~--------g~~~~A~~~~~~~~~~--~--------~~~~~~li~~~~~~g~~ 198 (488)
.....+...|... |++++|..+|+++.+. + ..+|..+...+...|++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 1333444443332 4789999999988762 2 23577777888999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHh
Q 036287 199 IEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITN 278 (488)
Q Consensus 199 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 278 (488)
++|+..|++..+. .|+...+..+...+...|++++|...+..+.+. .+.+..++..+...|...|++++|.+.+++
T Consensus 260 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 260 LDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp HHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9999999999985 566788888999999999999999999999853 234578899999999999999999999998
Q ss_pred C-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 279 M-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 279 m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
. ...| +...|..+...+...|++++|...++++++..|.++.++..++.+|...|++++|.+.++++.+..
T Consensus 336 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 336 AQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 8 3334 467899999999999999999999999999999999999999999999999999999999987654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.8e-18 Score=164.34 Aligned_cols=261 Identities=10% Similarity=-0.035 Sum_probs=205.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 036287 80 DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALIN 159 (488)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 159 (488)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...+..+++.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888888888888888888888888764 4567788888888888888888888888888765 446778888888
Q ss_pred HHHhcCCHHHHHHHHHhcccCC-------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 036287 160 MYSRCGDIDKALQVFEEMKERD-------------VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIR-PTKVTFVGVLN 225 (488)
Q Consensus 160 ~y~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~ 225 (488)
+|...|++++|...|+++.+.+ ...+..+...+...|++++|+..|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 8888899999988888876422 123344577888999999999999999885322 15778888899
Q ss_pred HHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhH
Q 036287 226 ACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQL 303 (488)
Q Consensus 226 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 303 (488)
.+...|++++|...|+.+.+. .+.+..+|..+..+|.+.|++++|.+.++++ ...| +..+|..+...+...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999998853 2345788999999999999999999999987 4445 48889999999999999999
Q ss_pred HHHHHHHHHhcCCC------------CchhHHHHHHHHhcCCChHHHHHHHHH
Q 036287 304 GEQIAKRLLDCRSA------------DSGTYVLLSNAYASSGKWKEAVQIRAK 344 (488)
Q Consensus 304 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 344 (488)
|...++++++..|. +..+|..|..++...|+.+.+.++.+.
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999997655 357889999999999999988877654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-19 Score=172.85 Aligned_cols=282 Identities=12% Similarity=0.132 Sum_probs=137.7
Q ss_pred HhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036287 29 GKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQ 108 (488)
Q Consensus 29 ~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 108 (488)
-+.|++++|.++++++.. +.+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++..+
T Consensus 14 ~~~~~ld~A~~fae~~~~---~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNE---PAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCC---hHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 378999999999999954 469999999999999999999999764 577799999999999999999999777776
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHH
Q 036287 109 RDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSL 188 (488)
Q Consensus 109 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l 188 (488)
+. .+++.+...++.+|.+.|+++++.++++ .|+..+|+.+.+.|...|.+++|...|..+ ..|..+
T Consensus 89 k~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~L 154 (449)
T 1b89_A 89 KK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRL 154 (449)
T ss_dssp ----------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHH
T ss_pred Hh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHH
Confidence 64 4567889999999999999999988874 367779999999999999999999999988 489999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCC
Q 036287 189 IAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGR 268 (488)
Q Consensus 189 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 268 (488)
+.++.+.|++++|++.++++ .+..+|..++.+|...|+++.|......+. ..+.....++..|.+.|+
T Consensus 155 A~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~------~~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGY 222 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT------TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH------hCHhhHHHHHHHHHHCCC
Confidence 99999999999999999998 368899999999999999999966554432 334445579999999999
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh--CChhHHHHHHHHHHhcCC-----CCchhHHHHHHHHhcCCChHHHH
Q 036287 269 PEEAYDFITNM-KIAP-DHIMLGSLLSACKIH--GKLQLGEQIAKRLLDCRS-----ADSGTYVLLSNAYASSGKWKEAV 339 (488)
Q Consensus 269 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~ 339 (488)
+++|..+++.. +..+ ....|+-|.-++++. +++.+..+.|..-+...| .+...|.-+...|...++|+.|.
T Consensus 223 ~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 223 FEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 99999999886 5544 478888887777665 344455555544444445 57789999999999999999998
Q ss_pred HH
Q 036287 340 QI 341 (488)
Q Consensus 340 ~~ 341 (488)
..
T Consensus 303 ~t 304 (449)
T 1b89_A 303 IT 304 (449)
T ss_dssp HH
T ss_pred HH
Confidence 63
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.79 E-value=9.9e-18 Score=161.33 Aligned_cols=281 Identities=11% Similarity=0.031 Sum_probs=224.1
Q ss_pred HHHhcCChHHHHH-HHhhCCCCC------ceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCC
Q 036287 27 LYGKCGEFKDAMQ-LFDEMPECN------DVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGE 96 (488)
Q Consensus 27 ~y~~~g~~~~A~~-~~~~m~~~~------~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~ 96 (488)
.|...|++++|.. .|++..... +...|..+...+.+.|++++|...|+++. +.+..+|..+...|.+.|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 3445688999998 888655421 36779999999999999999999999875 4477899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHH----------------HHHHH
Q 036287 97 MARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGG----------------ALINM 160 (488)
Q Consensus 97 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----------------~li~~ 160 (488)
+++|+..|+++.+.. +.+..++..+...+...|++++|...+..+.+.... +...+. .+...
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 999999999998864 557889999999999999999999999999987532 222221 23334
Q ss_pred HHhcCCHHHHHHHHHhccc--C---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 036287 161 YSRCGDIDKALQVFEEMKE--R---DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDL 235 (488)
Q Consensus 161 y~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 235 (488)
+ ..|++++|...|+++.+ | +..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++
T Consensus 192 ~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 192 L-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp H-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred h-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHH
Confidence 4 89999999999998864 3 57889999999999999999999999998852 4457788899999999999999
Q ss_pred HHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC------------CHHHHHHHHHHHHHhCChh
Q 036287 236 GFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP------------DHIMLGSLLSACKIHGKLQ 302 (488)
Q Consensus 236 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p------------~~~~~~~ll~~~~~~g~~~ 302 (488)
|...|+.+.+. .+.+...+..+..+|.+.|++++|.+.++++ ...| ...+|..+..++...|+.+
T Consensus 270 A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 270 AVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence 99999998853 2334788999999999999999999999887 2222 1688999999999999999
Q ss_pred HHHHHHHHHHh
Q 036287 303 LGEQIAKRLLD 313 (488)
Q Consensus 303 ~a~~~~~~~~~ 313 (488)
+|..++++.++
T Consensus 348 ~A~~~~~~~l~ 358 (368)
T 1fch_A 348 AYGAADARDLS 358 (368)
T ss_dssp GHHHHHTTCHH
T ss_pred hHHHhHHHHHH
Confidence 99988875544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.5e-18 Score=162.25 Aligned_cols=259 Identities=10% Similarity=-0.003 Sum_probs=213.1
Q ss_pred ceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036287 49 DVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSA 125 (488)
Q Consensus 49 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 125 (488)
+...|..+...+.+.|++++|.+.|+++. +.+..+|..+...|.+.|++++|+..|+++.+.. +.+..++..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 46679999999999999999999999875 4578899999999999999999999999998864 4568899999999
Q ss_pred HHhcCchHHHHHHHHHHHHcCCCC---------cHhHHHHHHHHHHhcCCHHHHHHHHHhccc--C---CHHHHHHHHHH
Q 036287 126 CSQLGALELGRWIHSYMGKHRIDL---------NHIVGGALINMYSRCGDIDKALQVFEEMKE--R---DVTTYNSLIAG 191 (488)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~g~~~---------~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~ 191 (488)
+...|++++|...++.+.+..... ...++..+...|.+.|++++|...|+++.+ | +..+|..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 999999999999999998764110 122334468899999999999999999874 2 68899999999
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhcCChH
Q 036287 192 LAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPE 270 (488)
Q Consensus 192 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 270 (488)
|...|++++|+..|++..+. .+.+..++..+..+|...|++++|...|+.+.+. .|+ ...+..+..+|.+.|+++
T Consensus 223 ~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTV-RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI---QPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHCCCHH
Confidence 99999999999999999986 2446788999999999999999999999999853 444 788999999999999999
Q ss_pred HHHHHHHhC-CCCC-------------CHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 036287 271 EAYDFITNM-KIAP-------------DHIMLGSLLSACKIHGKLQLGEQIAKRLL 312 (488)
Q Consensus 271 ~A~~~~~~m-~~~p-------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 312 (488)
+|...++++ ...| +..+|..+..++...|+.+.+..+.++..
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 999999987 2111 26789999999999999999988776643
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.2e-19 Score=170.31 Aligned_cols=260 Identities=12% Similarity=0.089 Sum_probs=123.2
Q ss_pred HHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHH
Q 036287 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHS 140 (488)
Q Consensus 61 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 140 (488)
-+.|++++|.++++++..| .+|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..+++
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3678899999999999766 4999999999999999999999965 2678899999999999999999999988
Q ss_pred HHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 036287 141 YMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTF 220 (488)
Q Consensus 141 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 220 (488)
...+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 88774 45578899999999999999999988864 77789999999999999999999999976 378
Q ss_pred HHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCC
Q 036287 221 VGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGK 300 (488)
Q Consensus 221 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~ 300 (488)
..+..++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+...|+. ...++..|.+.|.
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~ 222 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGY 222 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCC
Confidence 99999999999999999999987 25789999999999999999998777766555543 4468899999999
Q ss_pred hhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHh-CCCcc
Q 036287 301 LQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE-AGVQK 352 (488)
Q Consensus 301 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~~ 352 (488)
+++|..+++..+.+++.....|.-|..+|++- +.++..+.++.... -+++|
T Consensus 223 ~eEai~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k 274 (449)
T 1b89_A 223 FEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPK 274 (449)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcH
Confidence 99999999999999999999999999999876 34444444443322 24544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.7e-16 Score=145.29 Aligned_cols=268 Identities=13% Similarity=0.040 Sum_probs=202.0
Q ss_pred HHHHcCCHHHHHHHHhhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHH
Q 036287 59 CYVEHGLVENAFEVFSRVKVKD----TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALEL 134 (488)
Q Consensus 59 ~~~~~g~~~~A~~~f~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 134 (488)
-....|++..|+..++.....+ ......+..+|...|++++|+..++. . -+|+..++..+...+...++.+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHH
Confidence 3445677777777776655333 23445567788888888888876644 2 35566777777777888888888
Q ss_pred HHHHHHHHHHcCC-CCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 036287 135 GRWIHSYMGKHRI-DLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGI 213 (488)
Q Consensus 135 a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 213 (488)
|.+.++.+...+. +.+..++..+..+|...|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-- 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 8888888877664 44566677788889999999999999988 567888999999999999999999999999885
Q ss_pred CCCHHHH---HHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHH
Q 036287 214 RPTKVTF---VGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIML 288 (488)
Q Consensus 214 ~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 288 (488)
.|+.... ...+..+...|++++|..+|+.+.+. .+.+...++.+..+|.+.|++++|...+++. ...| +..+|
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 4654322 12334445668999999999999864 3556888999999999999999999999987 4445 57889
Q ss_pred HHHHHHHHHhCChhH-HHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHH
Q 036287 289 GSLLSACKIHGKLQL-GEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQ 340 (488)
Q Consensus 289 ~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 340 (488)
..++..+...|+.++ +..+++++++.+|.++.+. +...+.+.++++..
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 999999999999875 6789999999999987443 34444555555443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.7e-17 Score=153.61 Aligned_cols=273 Identities=8% Similarity=-0.024 Sum_probs=176.0
Q ss_pred eeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036287 50 VVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSAC 126 (488)
Q Consensus 50 ~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 126 (488)
...|..+...+...|++++|..+|+++. +.+..+|..+...+...|++++|+..|+++.+.. +.+..++..+...+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 3445555555666666666666665543 2244555555556666666666666666555542 23444555555555
Q ss_pred HhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHH-HH-HHHhcCChhHHHHH
Q 036287 127 SQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSL-IA-GLAMHGRSIEAVEM 204 (488)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~~A~~l 204 (488)
...|++++|...+..+.+... .+...+..+.... ++......+ .. .+...|++++|+..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~ 160 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQP-QYEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRTL 160 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTST-TTTTC--------------------------------------CCTTSHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHHH
Confidence 555555555555555554431 1111111110000 000001111 11 25667778888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 036287 205 FREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP 283 (488)
Q Consensus 205 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 283 (488)
++++.+.. +.+...+..+...+...|++++|...+..+.+. .+.+...+..+...|...|++++|.+.++++ ...|
T Consensus 161 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 237 (327)
T 3cv0_A 161 LHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237 (327)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 88877653 335667777777888888888888888887742 2334677888888899999999999988887 3334
Q ss_pred -CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC------------CchhHHHHHHHHhcCCChHHHHHHHHHH
Q 036287 284 -DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSA------------DSGTYVLLSNAYASSGKWKEAVQIRAKM 345 (488)
Q Consensus 284 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 345 (488)
+..+|..+...+...|++++|...++++++..|. ++.++..++.+|...|++++|..++++.
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5788999999999999999999999999998888 6789999999999999999999988744
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.5e-15 Score=148.91 Aligned_cols=318 Identities=12% Similarity=0.036 Sum_probs=199.5
Q ss_pred chhhHHHHHHHHHh----cCChHHHHHHHhhCCCCCceeeHHHHHHHHHH----cCCHHHHHHHHhhcCC-CCHHHHHHH
Q 036287 17 NRSTRLKLVELYGK----CGEFKDAMQLFDEMPECNDVVASTVMINCYVE----HGLVENAFEVFSRVKV-KDTVCWTAM 87 (488)
Q Consensus 17 ~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~~~~-~~~~~~~~l 87 (488)
++..+..|..+|.. .+++++|.+.|++..+.+++.++..|...|.. .+++++|.+.|++... .+..++..|
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~L 153 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSM 153 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34455556666666 66666666666665555555666666666665 5666666666665442 245556666
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCchHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 036287 88 IDGLVR----NGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQ----LGALELGRWIHSYMGKHRIDLNHIVGGALIN 159 (488)
Q Consensus 88 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 159 (488)
...|.. .+++++|++.|++..+.| +...+..+...+.. .++.++|..++....+.| +...+..|..
T Consensus 154 g~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 227 (490)
T 2xm6_A 154 GDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLAD 227 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 666665 566666666666666543 45555556556655 566666666666666654 3445555666
Q ss_pred HHHh----cCCHHHHHHHHHhccc-CCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 036287 160 MYSR----CGDIDKALQVFEEMKE-RDVTTYNSLIAGLAM----HGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHG 230 (488)
Q Consensus 160 ~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 230 (488)
+|.. .+++++|...|++..+ .+..++..+...|.. .++.++|+..|++..+.| +...+..+...|...
T Consensus 228 ~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~ 304 (490)
T 2xm6_A 228 MYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKG 304 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHC
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcC
Confidence 6664 5667777776666544 345556666666665 667777777777766543 333444555555554
Q ss_pred -----CCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----h
Q 036287 231 -----GLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVG---RPEEAYDFITNMKIAPDHIMLGSLLSACKI----H 298 (488)
Q Consensus 231 -----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~ 298 (488)
++.++|...|....+. .+...+..|..+|.+.| ++++|.+.|++.-...++..+..|...|.. .
T Consensus 305 ~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~ 380 (490)
T 2xm6_A 305 AEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVK 380 (490)
T ss_dssp BTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC
T ss_pred CCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 6777777777766642 23445566666666655 667777777766222456677777777777 6
Q ss_pred CChhHHHHHHHHHHhcCCCCchhHHHHHHHHhc----CCChHHHHHHHHHHHhCC
Q 036287 299 GKLQLGEQIAKRLLDCRSADSGTYVLLSNAYAS----SGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 299 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 349 (488)
+++++|...++++.+.+ ++.++..|..+|.. .+++++|...|++..+.+
T Consensus 381 ~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 381 KDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 77777777777777654 35567777777776 677788888777777665
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-16 Score=159.02 Aligned_cols=336 Identities=11% Similarity=-0.026 Sum_probs=226.4
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhhCCC-----------CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC-------C
Q 036287 17 NRSTRLKLVELYGKCGEFKDAMQLFDEMPE-----------CNDVVASTVMINCYVEHGLVENAFEVFSRVK-------V 78 (488)
Q Consensus 17 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~-------~ 78 (488)
....||.|...|...|++++|++.|++..+ +...++|+.+...|...|++++|...|++.. .
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 355799999999999999999999876532 2246789999999999999999999888653 1
Q ss_pred ----CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCchHHHHHHHHHHHHcCCCC
Q 036287 79 ----KDTVCWTAMIDGLVRN--GEMARALDLFREMQRDNVRPNEVTIVCVLSA---CSQLGALELGRWIHSYMGKHRIDL 149 (488)
Q Consensus 79 ----~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~g~~~ 149 (488)
....+++.+..++... +++++|+..|++..+.. |-+...+..+..+ +...++.++|.+.++..++.. +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 1345677666666654 46999999999998853 2344555555444 345577788889998888775 44
Q ss_pred cHhHHHHHHHHHH----hcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHH
Q 036287 150 NHIVGGALINMYS----RCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPT-KVTFV 221 (488)
Q Consensus 150 ~~~~~~~li~~y~----~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~ 221 (488)
+..++..+...+. ..|++++|.+.+++... .+..++..+...|...|++++|+..|++..+. .|+ ..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHH
Confidence 5556655554444 45678899999987653 56788999999999999999999999999885 444 44555
Q ss_pred HHHHHHhcc-------------------CCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 036287 222 GVLNACSHG-------------------GLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KI 281 (488)
Q Consensus 222 ~ll~a~~~~-------------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 281 (488)
.+..+|... +..++|...+....+. -+.+...+..+...|...|++++|++.|++. ..
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 555444321 2356777777777642 2334677888999999999999999999987 44
Q ss_pred CCCHHH----HHHHHHH-HHHhCChhHHHHHHHHHHhc------------------------CCCCchhHHHHHHHHhcC
Q 036287 282 APDHIM----LGSLLSA-CKIHGKLQLGEQIAKRLLDC------------------------RSADSGTYVLLSNAYASS 332 (488)
Q Consensus 282 ~p~~~~----~~~ll~~-~~~~g~~~~a~~~~~~~~~~------------------------~p~~~~~~~~l~~~~~~~ 332 (488)
.|+... +..+... ....|+.++|+..+++++++ +|.++.+|..|+.+|...
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~ 443 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELN 443 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 454332 2333322 34568888888888777654 577788999999999999
Q ss_pred CChHHHHHHHHHHHhCCCccCCceeE
Q 036287 333 GKWKEAVQIRAKMKEAGVQKEPGCSS 358 (488)
Q Consensus 333 g~~~~a~~~~~~m~~~g~~~~~~~s~ 358 (488)
|++++|.+.|++..+.+-..+...+|
T Consensus 444 g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 444 EKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHCC----------------------
T ss_pred CCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 99999999999998876443334444
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-16 Score=150.63 Aligned_cols=258 Identities=13% Similarity=0.029 Sum_probs=159.4
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHH
Q 036287 17 NRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGL 91 (488)
Q Consensus 17 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~ 91 (488)
+...+..+...+.+.|++++|..+|+++.. +++..+|..+...+...|++++|.+.|+++. +.+..+|..+...|
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 345567888999999999999999998765 4457889999999999999999999999875 44778999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHhcCchHHHHHHHHHHHHcCCCCcHhHHHH
Q 036287 92 VRNGEMARALDLFREMQRDNVRPNEVTIVCV--------------LS-ACSQLGALELGRWIHSYMGKHRIDLNHIVGGA 156 (488)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 156 (488)
...|++++|++.|+++.+.. +.+...+..+ .. .+...|++++|...+..+.+.. +.+..++..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 99999999999999999864 2222233222 11 1444455555555555555443 223444455
Q ss_pred HHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 036287 157 LINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLV 233 (488)
Q Consensus 157 li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 233 (488)
+...|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|+++.+.. +.+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~----------------- 239 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGY----------------- 239 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC-----------------
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC-----------------
Confidence 55555555555555555554432 233444444455555555555555555444421 122
Q ss_pred HHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-------------CHHHHHHHHHHHHHhC
Q 036287 234 DLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-------------DHIMLGSLLSACKIHG 299 (488)
Q Consensus 234 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-------------~~~~~~~ll~~~~~~g 299 (488)
...+..+...|.+.|++++|.+.++++ ...| +..+|..+..++...|
T Consensus 240 -------------------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 240 -------------------VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN 300 (327)
T ss_dssp -------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred -------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC
Confidence 344444555555555555555555444 1111 2455666666666666
Q ss_pred ChhHHHHHHHHHHh
Q 036287 300 KLQLGEQIAKRLLD 313 (488)
Q Consensus 300 ~~~~a~~~~~~~~~ 313 (488)
+.++|..++++.++
T Consensus 301 ~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 301 RPDLVELTYAQNVE 314 (327)
T ss_dssp CHHHHHHHTTCCSH
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666655444
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-14 Score=145.53 Aligned_cols=320 Identities=14% Similarity=0.055 Sum_probs=271.2
Q ss_pred CchhhHHHHHHHHHh----cCChHHHHHHHhhCCCCCceeeHHHHHHHHHH----cCCHHHHHHHHhhcCC-CCHHHHHH
Q 036287 16 SNRSTRLKLVELYGK----CGEFKDAMQLFDEMPECNDVVASTVMINCYVE----HGLVENAFEVFSRVKV-KDTVCWTA 86 (488)
Q Consensus 16 ~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~~~~-~~~~~~~~ 86 (488)
.++.....|...|.. .+++++|...|++..+.+++.++..|...|.. .++.++|.+.|++... .+..++..
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~ 116 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQN 116 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 366778888888988 89999999999988777778899999999999 9999999999998764 47788899
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCchHHHHHHHHHHHHcCCCCcHhHHHHHH
Q 036287 87 MIDGLVR----NGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQ----LGALELGRWIHSYMGKHRIDLNHIVGGALI 158 (488)
Q Consensus 87 li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 158 (488)
|...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|.++++...+.| +...+..|.
T Consensus 117 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg 190 (490)
T 2xm6_A 117 LGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLG 190 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 9999998 889999999999998876 56777788888877 789999999999999876 677888899
Q ss_pred HHHHh----cCCHHHHHHHHHhccc-CCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 036287 159 NMYSR----CGDIDKALQVFEEMKE-RDVTTYNSLIAGLAM----HGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSH 229 (488)
Q Consensus 159 ~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 229 (488)
.+|.. .++.++|.+.|++..+ .+..++..+...|.. .+++++|+..|++..+.| +...+..+...+..
T Consensus 191 ~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~ 267 (490)
T 2xm6_A 191 YMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQ 267 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHC
Confidence 99998 8999999999998765 567788888888886 889999999999998764 44556666666766
Q ss_pred ----cCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhc-----CChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC-
Q 036287 230 ----GGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRV-----GRPEEAYDFITNMKIAPDHIMLGSLLSACKIHG- 299 (488)
Q Consensus 230 ----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g- 299 (488)
.++.++|..+|+...+. -+...+..|..+|... +++++|...+++.--..+...+..+...+...|
T Consensus 268 g~~~~~d~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~ 343 (490)
T 2xm6_A 268 GLAGAKEPLKALEWYRKSAEQ----GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGS 343 (490)
T ss_dssp TTTSSCCHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Confidence 89999999999998753 3456777888888887 899999999998722235677888888887766
Q ss_pred --ChhHHHHHHHHHHhcCCCCchhHHHHHHHHhc----CCChHHHHHHHHHHHhCCC
Q 036287 300 --KLQLGEQIAKRLLDCRSADSGTYVLLSNAYAS----SGKWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 300 --~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 350 (488)
+.++|...+++..+.+ ++..+..|..+|.. .+++++|.+.+++..+.|.
T Consensus 344 ~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~ 398 (490)
T 2xm6_A 344 EEEHKKAVEWFRKAAAKG--EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGL 398 (490)
T ss_dssp HHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCC
Confidence 7899999999999874 56789999999999 8999999999999988763
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-16 Score=147.03 Aligned_cols=246 Identities=12% Similarity=0.078 Sum_probs=203.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 036287 88 IDGLVRNGEMARALDLFREMQRDNVRPNE--VTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCG 165 (488)
Q Consensus 88 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 165 (488)
|.-....|++.+|+..+++.... .|+. .....+.+++...|+++.|...++. .-+|+......+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34566789999999999876543 3443 3556678999999999999976543 24667888889999999999
Q ss_pred CHHHHHHHHHhccc----C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 036287 166 DIDKALQVFEEMKE----R-DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIF 240 (488)
Q Consensus 166 ~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 240 (488)
+.++|.+.++++.. | +...+..+...|.+.|++++|++.+++ +.+...+..+...+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998742 3 566788888999999999999999987 567778888999999999999999999
Q ss_pred HhcccccCcccChhhH---HHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC
Q 036287 241 QSMTRDYGIEPQIEHY---GCIVDLLSRVGRPEEAYDFITNM--KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCR 315 (488)
Q Consensus 241 ~~~~~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 315 (488)
+.+.+. .|+.... ..++..+...|++++|..+|+++ ..+++...|+.+..++...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999853 4653211 23445555669999999999998 334578899999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHhcCCChHH-HHHHHHHHHhC
Q 036287 316 SADSGTYVLLSNAYASSGKWKE-AVQIRAKMKEA 348 (488)
Q Consensus 316 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 348 (488)
|.++.++..++..+...|++++ +.++++++.+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999976 57888888764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-14 Score=147.44 Aligned_cols=339 Identities=9% Similarity=0.005 Sum_probs=236.7
Q ss_pred HHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC--CCCH
Q 036287 6 HGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK--VKDT 81 (488)
Q Consensus 6 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~ 81 (488)
++..++.. +-|...|..++. +.+.|++++|+.+|+++.+ |.+...|..++..+.+.|++++|..+|++.. .|++
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~ 79 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHI 79 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCH
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Confidence 34444443 446778888888 4778999999999998866 4467789999999999999999999999876 4677
Q ss_pred HHHHHHHHH-HHHcCCHHHHHH----HHHHHHH-CCCCC-CHHHHHHHHHHHHh---------cCchHHHHHHHHHHHHc
Q 036287 82 VCWTAMIDG-LVRNGEMARALD----LFREMQR-DNVRP-NEVTIVCVLSACSQ---------LGALELGRWIHSYMGKH 145 (488)
Q Consensus 82 ~~~~~li~~-~~~~g~~~~A~~----~~~~m~~-~g~~p-~~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~ 145 (488)
..|...+.. ....|+.++|.+ +|++... .|..| +...|...+..... .|+++.|..+|+..++.
T Consensus 80 ~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~ 159 (530)
T 2ooe_A 80 DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN 159 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc
Confidence 778777753 345576666554 6666654 34443 34556555554433 57778888888877763
Q ss_pred CCCCcHhHHHHHHHHH-------------HhcCCHH--------------------------------------------
Q 036287 146 RIDLNHIVGGALINMY-------------SRCGDID-------------------------------------------- 168 (488)
Q Consensus 146 g~~~~~~~~~~li~~y-------------~~~g~~~-------------------------------------------- 168 (488)
.......+|....... .+.++++
T Consensus 160 P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~ 239 (530)
T 2ooe_A 160 PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQW 239 (530)
T ss_dssp CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHH
Confidence 2111112222111100 0111122
Q ss_pred ----------------HHHHHHHhccc---CCHHHHHHHHHHHHh-------cCChh-------HHHHHHHHHHHcCCCC
Q 036287 169 ----------------KALQVFEEMKE---RDVTTYNSLIAGLAM-------HGRSI-------EAVEMFREMINQGIRP 215 (488)
Q Consensus 169 ----------------~A~~~~~~~~~---~~~~~~~~li~~~~~-------~g~~~-------~A~~l~~~m~~~g~~p 215 (488)
.|..+|++... .+...|..++..+.+ .|+++ +|..+|++..+.-.+.
T Consensus 240 e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~ 319 (530)
T 2ooe_A 240 EKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK 319 (530)
T ss_dssp HHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS
T ss_pred HHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc
Confidence 33344544432 355677777777765 68877 8999999987631233
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-h-hhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHH
Q 036287 216 TKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-I-EHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSL 291 (488)
Q Consensus 216 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~-~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l 291 (488)
+...+..++..+...|++++|..+|+.+.+ +.|+ . ..|..++..+.+.|++++|.++|++. ...|+ ...|...
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~ 396 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA 396 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHH
Confidence 466777888888899999999999999884 3554 2 47888888888999999999999987 44443 2333322
Q ss_pred HHH-HHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 292 LSA-CKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 292 l~~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
... +...|+.++|..+|+++++..|.++..+..++..+.+.|+.++|..+|++....+
T Consensus 397 a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 397 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 222 3468999999999999999999999999999999999999999999999998763
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-17 Score=170.52 Aligned_cols=147 Identities=12% Similarity=0.124 Sum_probs=122.5
Q ss_pred eeeHHHHHHHHHHcCCHHHHHHHHhhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036287 50 VVASTVMINCYVEHGLVENAFEVFSRVK-------VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCV 122 (488)
Q Consensus 50 ~~~~~~li~~~~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 122 (488)
..+||+||++|+++|++++|.++|+.|. .||++|||+||.+|++.|++++|.++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4589999999999999999999997753 689999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCch-HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccC-----CHHHHHHHHHHHHhcC
Q 036287 123 LSACSQLGAL-ELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER-----DVTTYNSLIAGLAMHG 196 (488)
Q Consensus 123 l~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g 196 (488)
|.++++.|.. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+..+ .+.+.+.|.+.|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999984 789999999999999999999999998777665444444443333321 1334444555566544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-17 Score=170.51 Aligned_cols=125 Identities=13% Similarity=0.124 Sum_probs=93.7
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc-------cCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 036287 148 DLNHIVGGALINMYSRCGDIDKALQVFEEMK-------ERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTF 220 (488)
Q Consensus 148 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 220 (488)
..-..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3345678888888888888888888886654 368888888888888888888888888888888888888888
Q ss_pred HHHHHHHhccCC-HHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHH
Q 036287 221 VGVLNACSHGGL-VDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAY 273 (488)
Q Consensus 221 ~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 273 (488)
+++|.++++.|+ .++|.++|++|.+. |+.||..+|++++....+.+-++...
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vr 256 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVH 256 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHG
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHH
Confidence 888888887776 46777888888765 88888888887777666654443333
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-13 Score=139.84 Aligned_cols=340 Identities=9% Similarity=0.030 Sum_probs=244.8
Q ss_pred HhHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCCC-CceeeHHHHHHH-HHHcCCHHHHHH----HHhh
Q 036287 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPEC-NDVVASTVMINC-YVEHGLVENAFE----VFSR 75 (488)
Q Consensus 2 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-~~~~~~~~li~~-~~~~g~~~~A~~----~f~~ 75 (488)
++.+++.+++. .+.+...|..++..+.+.|++++|..+|+++... +++..|...+.. ....|++++|.+ +|+.
T Consensus 31 a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~ 109 (530)
T 2ooe_A 31 ARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDF 109 (530)
T ss_dssp HHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHHHHHHH
Confidence 46677777764 3556778999999999999999999999998763 345677777643 345677666654 6665
Q ss_pred cC------CCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-------------H
Q 036287 76 VK------VKDTVCWTAMIDGLVR---------NGEMARALDLFREMQRDNVRPNEVTIVCVLSAC-------------S 127 (488)
Q Consensus 76 ~~------~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-------------~ 127 (488)
.. .++...|...+....+ .|++++|..+|++.++....+....|....... .
T Consensus 110 al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~ 189 (530)
T 2ooe_A 110 ALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIED 189 (530)
T ss_dssp HHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHT
T ss_pred HHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHH
Confidence 32 2356778887776654 678888888888887721111112222111100 0
Q ss_pred hcCchH------------------------------------------------------------HHHHHHHHHHHcCC
Q 036287 128 QLGALE------------------------------------------------------------LGRWIHSYMGKHRI 147 (488)
Q Consensus 128 ~~~~~~------------------------------------------------------------~a~~~~~~~~~~g~ 147 (488)
..++++ .+..+++.+++..
T Consensus 190 ~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~- 268 (530)
T 2ooe_A 190 RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL- 268 (530)
T ss_dssp THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-
Confidence 001111 3334455554432
Q ss_pred CCcHhHHHHHHHHHHh-------cCCHH-------HHHHHHHhccc---C-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036287 148 DLNHIVGGALINMYSR-------CGDID-------KALQVFEEMKE---R-DVTTYNSLIAGLAMHGRSIEAVEMFREMI 209 (488)
Q Consensus 148 ~~~~~~~~~li~~y~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 209 (488)
+.+..+|..++..+.+ .|+++ +|..+|++..+ | +...|..++..+.+.|++++|..+|+++.
T Consensus 269 p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al 348 (530)
T 2ooe_A 269 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 348 (530)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 3456677777777765 69877 89999998764 3 57899999999999999999999999999
Q ss_pred HcCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHHHHHHH-HHhcCChHHHHHHHHhC-CCCC-
Q 036287 210 NQGIRPTK--VTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDL-LSRVGRPEEAYDFITNM-KIAP- 283 (488)
Q Consensus 210 ~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~-~~~~g~~~~A~~~~~~m-~~~p- 283 (488)
+ ..|+. ..|...+..+.+.|++++|.++|....+. .|+ ...|...+.. +...|+.++|..+|++. ...|
T Consensus 349 ~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~ 423 (530)
T 2ooe_A 349 A--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD 423 (530)
T ss_dssp H--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT
T ss_pred C--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC
Confidence 8 45653 47888888888899999999999999853 333 3333332222 34689999999999987 3334
Q ss_pred CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCch----hHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 284 DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSG----TYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 284 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
+...|..++..+...|+.++|..+|+++++..|.++. .|...+......|+.+.+.++.+++.+.
T Consensus 424 ~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 424 IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999998766554 7777788888999999999999988764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.4e-15 Score=132.70 Aligned_cols=227 Identities=9% Similarity=-0.020 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCC--CcHhHHHHHHH
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRID--LNHIVGGALIN 159 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~ 159 (488)
..|..+...+...|++++|+..|++..+.. ++..++..+..++...|++++|...+..+.+.... ++..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------- 76 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK------- 76 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH-------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH-------
Confidence 455666666666666666666666666554 45555555555555555555555555554442200 0000
Q ss_pred HHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 036287 160 MYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEI 239 (488)
Q Consensus 160 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 239 (488)
....+|..+...|...|++++|+..|++..+. .|+. ..+...|++++|...
T Consensus 77 --------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 77 --------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKK 127 (258)
T ss_dssp --------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHH
Confidence 00345566666666666666666666666663 3442 234445667777777
Q ss_pred HHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC
Q 036287 240 FQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSA 317 (488)
Q Consensus 240 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 317 (488)
++.+... .+.+...+..+...|...|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++..|.
T Consensus 128 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 205 (258)
T 3uq3_A 128 AEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205 (258)
T ss_dssp HHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence 7776632 2223566777788888888888888888776 3233 5778888888888889999999999999888888
Q ss_pred CchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 318 DSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 318 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
++.++..++.+|...|++++|.+.+++..+.
T Consensus 206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 206 FVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 8888888999999999999999988887653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.4e-15 Score=134.89 Aligned_cols=231 Identities=11% Similarity=0.003 Sum_probs=153.7
Q ss_pred eeeHHHHHHHHHHcCCHHHHHHHHhhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 036287 50 VVASTVMINCYVEHGLVENAFEVFSRVK--VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNV--RPN----EVTIVC 121 (488)
Q Consensus 50 ~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~t~~~ 121 (488)
...|..+...+...|++++|...|++.. ..+..+|..+...|...|++++|+..|++..+... .|+ ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 4578889999999999999999998754 26788999999999999999999999999887421 122 467778
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHhcCCh
Q 036287 122 VLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKER---DVTTYNSLIAGLAMHGRS 198 (488)
Q Consensus 122 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~ 198 (488)
+...+...|++++|...+..+.+.. |+ ...+.+.|++++|...++++... +...|..+...+...|++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence 8888888888888888888887754 33 23455556677777777665543 234555666666666666
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHh
Q 036287 199 IEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITN 278 (488)
Q Consensus 199 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 278 (488)
++|+..|++..+.. +.+..++..+..++...|++++|...++.+.+
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--------------------------------- 201 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE--------------------------------- 201 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------------------
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---------------------------------
Confidence 66666666665532 22333444444444444444444444444432
Q ss_pred CCCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC------CCCchhHHHH
Q 036287 279 MKIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCR------SADSGTYVLL 325 (488)
Q Consensus 279 m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l 325 (488)
..| +...|..+...+...|++++|...++++++.. |.+...+..+
T Consensus 202 --~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l 253 (258)
T 3uq3_A 202 --KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 253 (258)
T ss_dssp --HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred --hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHH
Confidence 222 35566666666666777777777777776665 5554444433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-14 Score=133.69 Aligned_cols=240 Identities=12% Similarity=-0.060 Sum_probs=157.4
Q ss_pred cCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHH
Q 036287 94 NGEMARALDLFREMQRDNV---RPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKA 170 (488)
Q Consensus 94 ~g~~~~A~~~~~~m~~~g~---~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 170 (488)
.|++++|+..|+++.+... +.+..++..+...+...|++++|...+..+++.. +.+..++..+..+|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 4566666666666665421 1134455566666666677777777666666654 33566666677777777777777
Q ss_pred HHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhccccc
Q 036287 171 LQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDY 247 (488)
Q Consensus 171 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 247 (488)
.+.|+++.+ .+..+|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|...+......
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 777776653 34567777777777777777777777777763 444444444445556667777887777666642
Q ss_pred CcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchh
Q 036287 248 GIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGT 321 (488)
Q Consensus 248 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 321 (488)
.+++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++.+|.+...
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 23333333 3666666777777777777765 33332 5778888889999999999999999999998877544
Q ss_pred HHHHHHHHhcCCChHHHHHHH
Q 036287 322 YVLLSNAYASSGKWKEAVQIR 342 (488)
Q Consensus 322 ~~~l~~~~~~~g~~~~a~~~~ 342 (488)
+ ..++...|++++|.+.+
T Consensus 252 ~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 H---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHhhHHHH
Confidence 4 55677778888887665
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-14 Score=127.74 Aligned_cols=194 Identities=15% Similarity=0.086 Sum_probs=140.2
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036287 148 DLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVL 224 (488)
Q Consensus 148 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 224 (488)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 44555666677777777777777777776554 355667777777777777777777777777642 23445666666
Q ss_pred HHHhcc-----------CCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHH
Q 036287 225 NACSHG-----------GLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPDHIMLGSL 291 (488)
Q Consensus 225 ~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 291 (488)
.++... |++++|...++...+ +.|+ ...+..+..+|...|++++|+..|++. ....+...|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 777777 888999988888874 3454 677888889999999999999999887 222678899999
Q ss_pred HHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHH
Q 036287 292 LSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKM 345 (488)
Q Consensus 292 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 345 (488)
..++...|++++|...++++++.+|.++.++..++.++...|++++|...+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.3e-14 Score=130.44 Aligned_cols=253 Identities=9% Similarity=-0.004 Sum_probs=137.8
Q ss_pred eeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 036287 51 VASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPN--EVTIVCVLSA 125 (488)
Q Consensus 51 ~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~ 125 (488)
..+......+...|++++|+..|++.. +.+..+|..+...|...|++++|+..|++..+.+..|+ ...+..+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 345555666666777777777766653 22444666666677777777777777766666321111 2235566666
Q ss_pred HHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHH
Q 036287 126 CSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAV 202 (488)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 202 (488)
+...|++++|...+..+.+.. +.+..++..+..+|...|++++|...|++..+ .+...|..+...+...+++++|+
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666553 33445566666666666666666666666553 23445555552222334666666
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHhccCC---HHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHh
Q 036287 203 EMFREMINQGIRPT-KVTFVGVLNACSHGGL---VDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITN 278 (488)
Q Consensus 203 ~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 278 (488)
+.|++..+. .|+ ...+..+..++...|+ .++|...++.+.+...-.|+.. -
T Consensus 163 ~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~---------------------- 217 (272)
T 3u4t_A 163 SSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-K---------------------- 217 (272)
T ss_dssp HHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-H----------------------
T ss_pred HHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-h----------------------
Confidence 666665553 222 2333333333333333 3333333333322110011100 0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcC
Q 036287 279 MKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASS 332 (488)
Q Consensus 279 m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 332 (488)
.....+|..+...+...|++++|...++++++.+|.++.+...+.......
T Consensus 218 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 218 ---DELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred ---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 001246677788888889999999999999999998887776665554433
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.61 E-value=7.1e-13 Score=140.80 Aligned_cols=286 Identities=13% Similarity=0.111 Sum_probs=228.8
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 036287 22 LKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARAL 101 (488)
Q Consensus 22 ~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 101 (488)
..+...+...|.+++|..+|++.... ....+.++ -..+++++|.++.++.. +..+|..+..++.+.|++++|+
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~~--~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDVN--TSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCH--HHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHH
Confidence 33556677788999999999886422 12223332 27888999999988774 4678999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCC
Q 036287 102 DLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD 181 (488)
Q Consensus 102 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 181 (488)
+.|.+. -|...|..++.+|.+.|+++++.+++....+.. ++..+.+.++.+|++.+++++..... ..++
T Consensus 1126 dsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n 1194 (1630)
T 1xi4_A 1126 DSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPN 1194 (1630)
T ss_pred HHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCC
Confidence 999663 477888999999999999999999999888765 34444456999999999998644443 4567
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHH
Q 036287 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVD 261 (488)
Q Consensus 182 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 261 (488)
...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++.. +..+|..+..
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~ 1258 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCF 1258 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHH
Confidence 778888999999999999999999985 378999999999999999999998774 3578888889
Q ss_pred HHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcC--CChHHHH
Q 036287 262 LLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASS--GKWKEAV 339 (488)
Q Consensus 262 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~ 339 (488)
++...|++..|......+ ..++..+..++..|...|.+++|+.+++..+.++|.+...|.-|..+|++. ++..++.
T Consensus 1259 acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred HHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999877754 345666778999999999999999999999999988888888888888775 2344444
Q ss_pred HHHH
Q 036287 340 QIRA 343 (488)
Q Consensus 340 ~~~~ 343 (488)
++|.
T Consensus 1337 k~f~ 1340 (1630)
T 1xi4_A 1337 ELFW 1340 (1630)
T ss_pred HHHH
Confidence 4443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.8e-14 Score=123.70 Aligned_cols=192 Identities=15% Similarity=0.057 Sum_probs=92.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 036287 80 DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALIN 159 (488)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 159 (488)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+++.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 33444455555555555555555555554432 2334444455555555555555555555555443 233444445555
Q ss_pred HHHhc-----------CCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036287 160 MYSRC-----------GDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLN 225 (488)
Q Consensus 160 ~y~~~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 225 (488)
+|.+. |++++|...|++..+ .+...|..+...|...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 55555 555555555555442 234455555555556666666666666655544 44555555555
Q ss_pred HHhccCCHHHHHHHHHhcccccCccc-ChhhHHHHHHHHHhcCChHHHHHHHHh
Q 036287 226 ACSHGGLVDLGFEIFQSMTRDYGIEP-QIEHYGCIVDLLSRVGRPEEAYDFITN 278 (488)
Q Consensus 226 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 278 (488)
++...|++++|...|+.+.+ ..| +...+..+..++.+.|++++|...+++
T Consensus 160 ~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALE---QAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTC-------------
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555666666665555553 123 244455555555555555555555544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-13 Score=132.83 Aligned_cols=244 Identities=10% Similarity=0.061 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 036287 81 TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGA-LELGRWIHSYMGKHRIDLNHIVGGALIN 159 (488)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~ 159 (488)
..+|+.+...+.+.|++++|+..|++.++.. +-+...|..+..++...|+ +++|...++.+++.. +.+..+|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4578888889999999999999999998864 3457788888888889996 999999999998876 457788888999
Q ss_pred HHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCCHHH
Q 036287 160 MYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSH-GGLVDL 235 (488)
Q Consensus 160 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~ 235 (488)
+|.+.|++++|+..|+++.+ .+..+|..+..++...|++++|+..|+++++.. +-+...+..+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999998774 577889999999999999999999999998853 3356677778888887 566566
Q ss_pred H-----HHHHHhcccccCcccC-hhhHHHHHHHHHhcC--ChHHHHHHHHhCCCCCC-HHHHHHHHHHHHHhC-------
Q 036287 236 G-----FEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVG--RPEEAYDFITNMKIAPD-HIMLGSLLSACKIHG------- 299 (488)
Q Consensus 236 a-----~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g------- 299 (488)
| +..|+...+ +.|+ ...|..+..+|...| ++++|++.+.++...|+ ...+..+...+...|
T Consensus 254 A~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 6 477777764 3554 678888888888888 68999998888755554 677888888888764
Q ss_pred --ChhHHHHHHHHH-HhcCCCCchhHHHHHHHHh
Q 036287 300 --KLQLGEQIAKRL-LDCRSADSGTYVLLSNAYA 330 (488)
Q Consensus 300 --~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~ 330 (488)
..++|..+++++ .+.+|.....|..++..+.
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 258999999999 8999998888887766553
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=9.6e-13 Score=120.95 Aligned_cols=225 Identities=10% Similarity=-0.067 Sum_probs=149.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCchHHHHHHHHHHHHcCCCCcHhHHH
Q 036287 80 DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQ----LGALELGRWIHSYMGKHRIDLNHIVGG 155 (488)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~ 155 (488)
+..++..+...|...|++++|+..|++..+. .+..++..+...+.. .+++++|...+....+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4566777777777777777777777777763 245566666677777 777777777777777765 556666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhccc-CCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036287 156 ALINMYSR----CGDIDKALQVFEEMKE-RDVTTYNSLIAGLAM----HGRSIEAVEMFREMINQGIRPTKVTFVGVLNA 226 (488)
Q Consensus 156 ~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 226 (488)
.+..+|.. .+++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 67777777 7777777777776554 355667777777777 777777777777777654 34455555556
Q ss_pred Hhc----cCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHh----cCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHH
Q 036287 227 CSH----GGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSR----VGRPEEAYDFITNM-KIAPDHIMLGSLLSACKI 297 (488)
Q Consensus 227 ~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~ 297 (488)
+.. .+++++|...|+...+. .+...+..+..+|.. .+++++|.+.+++. ... +...+..+...+..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQYN 230 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHHc
Confidence 655 67777777777766642 234555566666666 66777777666665 222 25556666666666
Q ss_pred ----hCChhHHHHHHHHHHhcCCCC
Q 036287 298 ----HGKLQLGEQIAKRLLDCRSAD 318 (488)
Q Consensus 298 ----~g~~~~a~~~~~~~~~~~p~~ 318 (488)
.+++++|...++++.+.+|++
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCCcccCHHHHHHHHHHHHHcCCHH
Confidence 667777777777777666644
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-12 Score=136.80 Aligned_cols=280 Identities=12% Similarity=0.132 Sum_probs=227.9
Q ss_pred hcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036287 30 KCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQR 109 (488)
Q Consensus 30 ~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 109 (488)
..|++++|.++.++.. ++.+|..+..++.+.|++++|.+.|.+. .|...|..++..+.+.|++++|++.|...++
T Consensus 1088 ~i~nldrAiE~Aervn---~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk 1162 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN---EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARK 1162 (1630)
T ss_pred HHhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6778888888887663 3789999999999999999999999774 6788899999999999999999999998877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHH
Q 036287 110 DNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLI 189 (488)
Q Consensus 110 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li 189 (488)
.. +++.....++.+|++.++++....+. + .++...+..+.+.|...|++++|..+|... ..|..+.
T Consensus 1163 ~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA 1228 (1630)
T 1xi4_A 1163 KA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLA 1228 (1630)
T ss_pred hc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHH
Confidence 54 34333445888999999988655442 2 345566777999999999999999999985 5899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCCh
Q 036287 190 AGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRP 269 (488)
Q Consensus 190 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 269 (488)
..|.+.|++++|++.+++. .+..+|..+-.+|...|++..|...... +..++..+..++..|.+.|.+
T Consensus 1229 ~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~f 1296 (1630)
T 1xi4_A 1229 STLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYF 1296 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCH
Confidence 9999999999999999986 3568899999999999999999887654 334566778999999999999
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHHh--CChhHHHHHHHHHHhcCC-----CCchhHHHHHHHHhcCCChHHHHH
Q 036287 270 EEAYDFITNM-KIAPD-HIMLGSLLSACKIH--GKLQLGEQIAKRLLDCRS-----ADSGTYVLLSNAYASSGKWKEAVQ 340 (488)
Q Consensus 270 ~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~ 340 (488)
++|+.+++.. +..|. ...|+-|...+.+. ++..++.+.|..-....| .+...|.-+...|.+.|+|+.|..
T Consensus 1297 eEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1297 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 9999999876 55553 56777777777665 455566666665555444 466789999999999999999984
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=8.5e-14 Score=127.75 Aligned_cols=237 Identities=8% Similarity=-0.124 Sum_probs=176.2
Q ss_pred cCCHHHHHHHHhhcCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHH
Q 036287 63 HGLVENAFEVFSRVKVK-------DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELG 135 (488)
Q Consensus 63 ~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 135 (488)
.|++++|+..|+++... +..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 46677777777765531 35678888888888999999999998888764 44678888888888889999999
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 036287 136 RWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE--RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGI 213 (488)
Q Consensus 136 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 213 (488)
...+..+++.. +.+..++..+..+|.+.|++++|...|+++.+ |+.......+..+...|++++|+..+++.... .
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~ 174 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-S 174 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-C
Confidence 99998888865 44577888888999999999999999988764 44344444455556779999999999888775 2
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-----hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH
Q 036287 214 RPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-----IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPDHIM 287 (488)
Q Consensus 214 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~ 287 (488)
+++...+ .++..+...++.++|...+....+. .|+ ...+..+...|.+.|++++|...+++. ...|+.
T Consensus 175 ~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 248 (275)
T 1xnf_A 175 DKEQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN-- 248 (275)
T ss_dssp CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--
T ss_pred CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--
Confidence 3444444 4667778888889999999888743 332 578888999999999999999999988 666643
Q ss_pred HHHHHHHHHHhCChhHHHHHH
Q 036287 288 LGSLLSACKIHGKLQLGEQIA 308 (488)
Q Consensus 288 ~~~ll~~~~~~g~~~~a~~~~ 308 (488)
+.....++...|++++|...+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 223345666778888877665
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.9e-14 Score=138.94 Aligned_cols=312 Identities=13% Similarity=0.068 Sum_probs=213.3
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCH---HHHHHHHhhcCCCCHHHHHHHHHHHHHcC----
Q 036287 23 KLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLV---ENAFEVFSRVKVKDTVCWTAMIDGLVRNG---- 95 (488)
Q Consensus 23 ~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g---- 95 (488)
.+...+.+.|++++|.++|++..+.+++.++..|...|...|+. ++|.+.|++..+.+..++..|...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Confidence 36677888999999999999887777788888888888888888 89999999887667777888888666665
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCch---HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC----CH
Q 036287 96 -EMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGAL---ELGRWIHSYMGKHRIDLNHIVGGALINMYSRCG----DI 167 (488)
Q Consensus 96 -~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g----~~ 167 (488)
++++|+..|++..+.|. |+ .+..+...|...+.. ..+.+.+......| +......|..+|...+ ..
T Consensus 88 ~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp HHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGH
T ss_pred cCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCH
Confidence 78899999999988773 33 555566666655543 33445555555555 3455667778888777 55
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----CCHHHHHHHH
Q 036287 168 DKALQVFEEMKERDVTTYNSLIAGLAMHG---RSIEAVEMFREMINQGIRPTKVTFVGVLNACSHG----GLVDLGFEIF 240 (488)
Q Consensus 168 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~----g~~~~a~~~~ 240 (488)
+.+..+++.....+..++..+...|...| +.++|++.|++..+.| .++...+..+...|... ++.++|..+|
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 66666777777777778888888888888 8899999999988876 44555445566666654 7889999999
Q ss_pred HhcccccCcccChhhHHHHHHH-H--HhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC-----ChhHHHHHHHHHH
Q 036287 241 QSMTRDYGIEPQIEHYGCIVDL-L--SRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHG-----KLQLGEQIAKRLL 312 (488)
Q Consensus 241 ~~~~~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~ 312 (488)
+... +-++..+..|..+ | ...+++++|.+.|++.--..+...+..|...|. .| ++++|...|++..
T Consensus 241 ~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 241 EKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 8875 3445666677776 4 467899999999988722236777777777776 55 8999999999888
Q ss_pred hcCCCCchhHHHHHHHHhc----CCChHHHHHHHHHHHhCCC
Q 036287 313 DCRSADSGTYVLLSNAYAS----SGKWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 313 ~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 350 (488)
|.++.++..|..+|.. ..++++|.+.+++..+.|.
T Consensus 315 ---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 315 ---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp ---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred ---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 7777888888888877 3488999999998887765
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-13 Score=136.24 Aligned_cols=303 Identities=14% Similarity=0.002 Sum_probs=202.1
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhhCCC-------C---CceeeHHHHHHHHHHcC--CHHHHHHHHhhcC---CCCH
Q 036287 17 NRSTRLKLVELYGKCGEFKDAMQLFDEMPE-------C---NDVVASTVMINCYVEHG--LVENAFEVFSRVK---VKDT 81 (488)
Q Consensus 17 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-------~---~~~~~~~~li~~~~~~g--~~~~A~~~f~~~~---~~~~ 81 (488)
...+|+.+..+|...|++++|...|++..+ + ....+++.+..++.+.| ++++|.+.|++.. +.+.
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~ 172 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP 172 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH
Confidence 356789999999999999999988876532 1 12445666666666654 6999999999865 3456
Q ss_pred HHHHHHHHHH---HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CchHHHHHHHHHHHHcCCCCcHhHH
Q 036287 82 VCWTAMIDGL---VRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQL----GALELGRWIHSYMGKHRIDLNHIVG 154 (488)
Q Consensus 82 ~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----~~~~~a~~~~~~~~~~g~~~~~~~~ 154 (488)
..+..+...+ ...++.++|++.|++..+.. +.+..++..+...+... ++.++|.+.++...+.. +.+..++
T Consensus 173 ~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~ 250 (472)
T 4g1t_A 173 EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVL 250 (472)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHH
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHH
Confidence 6666666553 45678889999999988754 34566666666555554 56788999999988875 5567888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhc-------------------CChhHHHHHHHHHHHcC
Q 036287 155 GALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMH-------------------GRSIEAVEMFREMINQG 212 (488)
Q Consensus 155 ~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-------------------g~~~~A~~l~~~m~~~g 212 (488)
..+...|.+.|++++|...|++..+ .+..+|..+...|... +..++|+..|++..+..
T Consensus 251 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 330 (472)
T 4g1t_A 251 RSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN 330 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC
Confidence 9999999999999999999998764 3556777776665432 23567888888887753
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChh----hHHHHHH-HHHhcCChHHHHHHHHhC-CC-----
Q 036287 213 IRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIE----HYGCIVD-LLSRVGRPEEAYDFITNM-KI----- 281 (488)
Q Consensus 213 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~-~~~~~g~~~~A~~~~~~m-~~----- 281 (488)
+.+..++..+...+...|++++|...|++..+. .|+.. .+..+.. .+...|+.++|++.+++. .+
T Consensus 331 -~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~ 406 (472)
T 4g1t_A 331 -DNLFRVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSR 406 (472)
T ss_dssp -TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCH
T ss_pred -CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH
Confidence 334556777888999999999999999988743 33322 2223332 234678999998888764 22
Q ss_pred -------------------CC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHH
Q 036287 282 -------------------AP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLL 325 (488)
Q Consensus 282 -------------------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 325 (488)
.| ++.+|..+...+...|++++|...++++++.+|.+|.+..-+
T Consensus 407 ~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 407 EKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 23 467889999999999999999999999999988777655443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.4e-13 Score=122.25 Aligned_cols=225 Identities=12% Similarity=0.016 Sum_probs=180.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcCC--CC----HHHHHHHHH
Q 036287 18 RSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVKV--KD----TVCWTAMID 89 (488)
Q Consensus 18 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~----~~~~~~li~ 89 (488)
..........|.+.|++++|...|++..+ +++..+|..+...|...|++++|.+.|++... ++ ..+|..+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 34566778889999999999999998755 34577999999999999999999999998653 22 335899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHH-HHHHhcCCHH
Q 036287 90 GLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALI-NMYSRCGDID 168 (488)
Q Consensus 90 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li-~~y~~~g~~~ 168 (488)
.|...|++++|+..|++..+.. +.+..++..+...+...|++++|...++.+++.. +.+..++..+. ..|. .++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHHHH
Confidence 9999999999999999999864 4467889999999999999999999999998874 55677787788 5555 45999
Q ss_pred HHHHHHHhccc---CCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHcC-CCCCH------HHHHHHHHHHhccCCHHH
Q 036287 169 KALQVFEEMKE---RDVTTYNSLIAGLAMHGR---SIEAVEMFREMINQG-IRPTK------VTFVGVLNACSHGGLVDL 235 (488)
Q Consensus 169 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g-~~p~~------~t~~~ll~a~~~~g~~~~ 235 (488)
+|.+.|+++.+ .+...|..+...+...|+ +++|...|++..+.. -.|+. ..+..+...|...|++++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999998874 356788888888988888 888999999988642 12331 355566667777777777
Q ss_pred HHHHHHhccc
Q 036287 236 GFEIFQSMTR 245 (488)
Q Consensus 236 a~~~~~~~~~ 245 (488)
|.+.|+.+.+
T Consensus 240 A~~~~~~al~ 249 (272)
T 3u4t_A 240 ADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777777763
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=9.5e-14 Score=124.90 Aligned_cols=213 Identities=11% Similarity=0.003 Sum_probs=110.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 036287 80 DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALIN 159 (488)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 159 (488)
...+|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...+..+.+.. +.+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 34566666777777777777777777776643 3345555556666666666666666666655543 223344444444
Q ss_pred HHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 036287 160 MYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEI 239 (488)
Q Consensus 160 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 239 (488)
.|...|++++| ++.|+++.+.. +.+...+..+...+...|++++|...
T Consensus 100 ~~~~~~~~~~A-------------------------------~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~ 147 (243)
T 2q7f_A 100 VYVVKEMYKEA-------------------------------KDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPY 147 (243)
T ss_dssp HHHHTTCHHHH-------------------------------HHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHhccHHHH-------------------------------HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 44444444444 44444444321 22333344444444445555555555
Q ss_pred HHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC
Q 036287 240 FQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIA-PDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSA 317 (488)
Q Consensus 240 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 317 (488)
++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ... .+..+|..+...+...|++++|...++++++..|.
T Consensus 148 ~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 148 LQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 5444421 1223445556666666677777777766665 222 24667777888888888888888888888888888
Q ss_pred CchhHHHHHHH
Q 036287 318 DSGTYVLLSNA 328 (488)
Q Consensus 318 ~~~~~~~l~~~ 328 (488)
++.++..+...
T Consensus 226 ~~~~~~~~~~l 236 (243)
T 2q7f_A 226 HMLALHAKKLL 236 (243)
T ss_dssp CHHHHHHHTC-
T ss_pred hHHHHHHHHHH
Confidence 77666655443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.57 E-value=5.5e-13 Score=120.79 Aligned_cols=205 Identities=11% Similarity=-0.037 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 036287 81 TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINM 160 (488)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 160 (488)
...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.+..+.+.. +.+..++..+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3456666666666666666666666665542 2344455555555555555555555555554443 2233344444444
Q ss_pred HHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHH
Q 036287 161 YSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRP-TKVTFVGVLNACSHGGLVDLGFEI 239 (488)
Q Consensus 161 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 239 (488)
|...|++++|.+.|+++. +.+..| +...+..+..++...|++++|...
T Consensus 115 ~~~~g~~~~A~~~~~~~~-------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEAS-------------------------------QDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp HHHTTCHHHHHHHHHHHT-------------------------------TCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH-------------------------------hCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444444444444444433 211112 122222333333333333333333
Q ss_pred HHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC
Q 036287 240 FQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSA 317 (488)
Q Consensus 240 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 317 (488)
+..+.+. .+.+...+..+...|...|++++|.+.++++ ...| +...+..+...+...|+.++|...++++.+..|.
T Consensus 164 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 164 FEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 3333321 0112334444444555555555555555444 2222 3444555555555666666666666666666655
Q ss_pred Cch
Q 036287 318 DSG 320 (488)
Q Consensus 318 ~~~ 320 (488)
++.
T Consensus 242 ~~~ 244 (252)
T 2ho1_A 242 SLE 244 (252)
T ss_dssp SHH
T ss_pred CHH
Confidence 543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.5e-13 Score=117.71 Aligned_cols=195 Identities=12% Similarity=0.001 Sum_probs=123.0
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036287 151 HIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNAC 227 (488)
Q Consensus 151 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 227 (488)
..++..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 44455555666666666666666655442 244556666666666666666666666666542 23445555666666
Q ss_pred hcc-CCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhH
Q 036287 228 SHG-GLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQL 303 (488)
Q Consensus 228 ~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 303 (488)
... |++++|...++.+.+ .+..|+ ...+..+...|...|++++|.+.++++ ...| +...|..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 666 666666666666654 122332 455666666777777777777776665 2223 36666777777777777777
Q ss_pred HHHHHHHHHhcCC-CCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 304 GEQIAKRLLDCRS-ADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 304 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
|...++++++..| .++..+..+...+...|+.+++..+++.+.+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 7777777777777 6666777777777777777777777777654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.56 E-value=4.6e-13 Score=121.27 Aligned_cols=197 Identities=8% Similarity=0.006 Sum_probs=171.0
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036287 151 HIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNAC 227 (488)
Q Consensus 151 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 227 (488)
..++..+...|...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45677788888899999999999888764 467788999999999999999999999998863 34667888888999
Q ss_pred hccCCHHHHHHHHHhcccccCccc-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHH
Q 036287 228 SHGGLVDLGFEIFQSMTRDYGIEP-QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLG 304 (488)
Q Consensus 228 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 304 (488)
...|++++|..+++.+.+ .+..| +...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999986 23455 4678888999999999999999999987 3334 588899999999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 305 EQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 305 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
...++++.+..|.+...+..++..|...|++++|.+.++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999997753
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.1e-13 Score=131.33 Aligned_cols=267 Identities=15% Similarity=0.082 Sum_probs=172.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCchHHHHHHHHHHHHc----CCCC-c
Q 036287 80 DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPN----EVTIVCVLSACSQLGALELGRWIHSYMGKH----RIDL-N 150 (488)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~ 150 (488)
....+..+...+...|++++|+..|++..+.+ +.+ ...+..+...+...|+++.|...+..+.+. +.++ .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 34455555666666666666666666666542 122 234555566666666666666666655432 1111 2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CC----HHHHHHHHHHHHhcCC--------------------hhHH
Q 036287 151 HIVGGALINMYSRCGDIDKALQVFEEMKE-----RD----VTTYNSLIAGLAMHGR--------------------SIEA 201 (488)
Q Consensus 151 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A 201 (488)
..++..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 34556666777777777777777766543 12 3366677777777777 7777
Q ss_pred HHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC----hhhHHHHHHHHHhcCChHHH
Q 036287 202 VEMFREMINQ----GIRPT-KVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ----IEHYGCIVDLLSRVGRPEEA 272 (488)
Q Consensus 202 ~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A 272 (488)
+..+++..+. +..|. ..++..+...+...|++++|...+....+...-.++ ...+..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 7777765532 11111 235566667777788888888887776642111111 23677788888888888888
Q ss_pred HHHHHhC----CCCCC----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC------chhHHHHHHHHhcCCChHHH
Q 036287 273 YDFITNM----KIAPD----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD------SGTYVLLSNAYASSGKWKEA 338 (488)
Q Consensus 273 ~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a 338 (488)
...+++. +..++ ..++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8888765 11112 5567788888888999999999998888754222 45777888899999999999
Q ss_pred HHHHHHHHh
Q 036287 339 VQIRAKMKE 347 (488)
Q Consensus 339 ~~~~~~m~~ 347 (488)
.+.+++..+
T Consensus 327 ~~~~~~al~ 335 (406)
T 3sf4_A 327 MHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888755
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.3e-12 Score=117.30 Aligned_cols=224 Identities=8% Similarity=-0.055 Sum_probs=195.4
Q ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHhccc-CCHHHHHHHH
Q 036287 115 NEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSR----CGDIDKALQVFEEMKE-RDVTTYNSLI 189 (488)
Q Consensus 115 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 189 (488)
+..++..+...+...|++++|...++...+.+ +...+..+..+|.. .|++++|...|++..+ .+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56778888889999999999999999999843 56778889999999 9999999999998765 4778899999
Q ss_pred HHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHhcccccCcccChhhHHHHHH
Q 036287 190 AGLAM----HGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSH----GGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVD 261 (488)
Q Consensus 190 ~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 261 (488)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|+...+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 67788888888888 99999999999998863 3 5667788888
Q ss_pred HHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----hCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhc--
Q 036287 262 LLSR----VGRPEEAYDFITNMKIAPDHIMLGSLLSACKI----HGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYAS-- 331 (488)
Q Consensus 262 ~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 331 (488)
.|.. .+++++|.+.+++.--..+...+..+...+.. .+++++|...++++.+.+| +..+..|..+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 9988 99999999999987222367888889999999 9999999999999999876 5688899999999
Q ss_pred --CCChHHHHHHHHHHHhCCC
Q 036287 332 --SGKWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 332 --~g~~~~a~~~~~~m~~~g~ 350 (488)
.+++++|.+.+++..+.|.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTC
T ss_pred CcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999987664
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-12 Score=116.26 Aligned_cols=209 Identities=9% Similarity=-0.021 Sum_probs=120.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 036287 80 DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALIN 159 (488)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 159 (488)
+...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|...+..+.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45567777777777777777777777776643 3345566666666666666666666666665543 223444444555
Q ss_pred HHHhc-CCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHH
Q 036287 160 MYSRC-GDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPT-KVTFVGVLNACSHGGLVDLGF 237 (488)
Q Consensus 160 ~y~~~-g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~ 237 (488)
.|... |++++|...|++ +.+.+..|+ ...+..+..++...|++++|.
T Consensus 85 ~~~~~~~~~~~A~~~~~~-------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 133 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDK-------------------------------ALADPTYPTPYIANLNKGICSAKQGQFGLAE 133 (225)
T ss_dssp HHHTTTCCHHHHHHHHHH-------------------------------HHTSTTCSCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCcHHHHHHHHHH-------------------------------HHcCcCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 55555 555555555544 444211222 233444444455555555555
Q ss_pred HHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCC--CCHHHHHHHHHHHHHhCChhHHHHHHHHHHhc
Q 036287 238 EIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIA--PDHIMLGSLLSACKIHGKLQLGEQIAKRLLDC 314 (488)
Q Consensus 238 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 314 (488)
..+..+.+. .+.+...+..+...|.+.|++++|.+.++++ ... .+...+..+...+...|+.+.+...++.+.+.
T Consensus 134 ~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 134 AYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 555554421 1122445556666666666666666666655 222 24555666666677778888888888887777
Q ss_pred CCCCchhHH
Q 036287 315 RSADSGTYV 323 (488)
Q Consensus 315 ~p~~~~~~~ 323 (488)
.|.++....
T Consensus 212 ~p~~~~~~~ 220 (225)
T 2vq2_A 212 FPYSEELQT 220 (225)
T ss_dssp CTTCHHHHH
T ss_pred CCCCHHHHH
Confidence 777765443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-13 Score=135.24 Aligned_cols=265 Identities=15% Similarity=0.047 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCchHHHHHHHHHHHHc----C-CCCcHhH
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRDNVRPNE----VTIVCVLSACSQLGALELGRWIHSYMGKH----R-IDLNHIV 153 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~ 153 (488)
.+..+...+...|++++|+..|+++.+.+ +.+. ..+..+...+...|++++|...+..+++. + .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34455666777777777777777776643 2222 35666666777777777777777766543 1 1223456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccC---------CHHHHHHHHHHHHhcCC-----------------hhHHHHHHHH
Q 036287 154 GGALINMYSRCGDIDKALQVFEEMKER---------DVTTYNSLIAGLAMHGR-----------------SIEAVEMFRE 207 (488)
Q Consensus 154 ~~~li~~y~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~l~~~ 207 (488)
+..+...|...|++++|...|++..+. ...++..+...|...|+ +++|+..+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 667777777888888887777765431 23467777777888888 7888877777
Q ss_pred HHHc----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC----hhhHHHHHHHHHhcCChHHHHHHHHh
Q 036287 208 MINQ----GIRP-TKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ----IEHYGCIVDLLSRVGRPEEAYDFITN 278 (488)
Q Consensus 208 m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 278 (488)
..+. +..| ...++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.+.+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 6542 1111 1235666777788888888888888877642111111 23677888888899999999888877
Q ss_pred C-CC---CCC----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC------CchhHHHHHHHHhcCCChHHHHHHHHH
Q 036287 279 M-KI---APD----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSA------DSGTYVLLSNAYASSGKWKEAVQIRAK 344 (488)
Q Consensus 279 m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 344 (488)
. .. ..+ ..++..+...+...|++++|...++++++..+. ...++..++.+|...|++++|.+.+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6 11 111 567788888999999999999999999875422 234788899999999999999999998
Q ss_pred HHhC
Q 036287 345 MKEA 348 (488)
Q Consensus 345 m~~~ 348 (488)
..+.
T Consensus 369 al~~ 372 (411)
T 4a1s_A 369 HLQL 372 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8653
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-13 Score=129.08 Aligned_cols=265 Identities=15% Similarity=0.078 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCchHHHHHHHHHHHHc----CCC-CcHhH
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRDNVRPN----EVTIVCVLSACSQLGALELGRWIHSYMGKH----RID-LNHIV 153 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~ 153 (488)
.+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|+++.|...+..+.+. +.. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34444556666666666666666666542 112 244555566666666666666666655432 111 12445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccc-----CC----HHHHHHHHHHHHhcCC--------------------hhHHHHH
Q 036287 154 GGALINMYSRCGDIDKALQVFEEMKE-----RD----VTTYNSLIAGLAMHGR--------------------SIEAVEM 204 (488)
Q Consensus 154 ~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~l 204 (488)
+..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|+..
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 56667777777777777777766542 22 2366667777777777 7777777
Q ss_pred HHHHHHc----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC----hhhHHHHHHHHHhcCChHHHHHH
Q 036287 205 FREMINQ----GIRP-TKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ----IEHYGCIVDLLSRVGRPEEAYDF 275 (488)
Q Consensus 205 ~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~ 275 (488)
+++.... +..| ...++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.+.
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7765431 1111 1235556667777788888888888776642111111 33677788888888999988888
Q ss_pred HHhC----CCCCC----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC------CchhHHHHHHHHhcCCChHHHHHH
Q 036287 276 ITNM----KIAPD----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSA------DSGTYVLLSNAYASSGKWKEAVQI 341 (488)
Q Consensus 276 ~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~ 341 (488)
+++. +..++ ..++..+...+...|++++|...++++++..+. ...++..++.+|...|++++|.+.
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 8775 11112 556777888899999999999999998875422 134777899999999999999999
Q ss_pred HHHHHhC
Q 036287 342 RAKMKEA 348 (488)
Q Consensus 342 ~~~m~~~ 348 (488)
+++..+.
T Consensus 326 ~~~a~~~ 332 (338)
T 3ro2_A 326 AEKHLEI 332 (338)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9988763
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-13 Score=122.42 Aligned_cols=196 Identities=14% Similarity=0.175 Sum_probs=154.8
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036287 150 NHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNA 226 (488)
Q Consensus 150 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 226 (488)
....+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|+..|++..+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 455666777888889999999998888764 367788889999999999999999999998863 3467788888899
Q ss_pred HhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHH
Q 036287 227 CSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLG 304 (488)
Q Consensus 227 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 304 (488)
+...|++++|.+.++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998853 2345778889999999999999999999987 3333 688899999999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 305 EQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 305 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
...++++.+..|.++.++..++.+|...|++++|.+.++++.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999774
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=2.9e-12 Score=123.20 Aligned_cols=242 Identities=10% Similarity=-0.024 Sum_probs=197.0
Q ss_pred ceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036287 49 DVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGE-MARALDLFREMQRDNVRPNEVTIVCVLS 124 (488)
Q Consensus 49 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 124 (488)
+..+|+.+...+.+.|++++|++.|++.. +.+..+|+.+...+...|+ +++|+..|++.++.. +-+...|..+..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 34678888899999999999999999865 4467899999999999997 999999999999864 346788999999
Q ss_pred HHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHh-cCChhH
Q 036287 125 ACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAM-HGRSIE 200 (488)
Q Consensus 125 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~-~g~~~~ 200 (488)
++...|++++|...++.+++.. +.+..+|..+..+|.+.|++++|+..|+++.+ .+...|+.+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchH
Confidence 9999999999999999999886 55788899999999999999999999999875 467899999999998 666688
Q ss_pred H-----HHHHHHHHHcCCCCCHHHHHHHHHHHhccC--CHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcC------
Q 036287 201 A-----VEMFREMINQGIRPTKVTFVGVLNACSHGG--LVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVG------ 267 (488)
Q Consensus 201 A-----~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g------ 267 (488)
| +..|++.++.. +-+...+..+...+...| +.++|.+.+..+ + ..+.+...+..+.++|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccc
Confidence 8 58888888742 334567777788888888 689999988887 2 33445678888999998874
Q ss_pred ---ChHHHHHHHHhC--CCCCC-HHHHHHHHHHHH
Q 036287 268 ---RPEEAYDFITNM--KIAPD-HIMLGSLLSACK 296 (488)
Q Consensus 268 ---~~~~A~~~~~~m--~~~p~-~~~~~~ll~~~~ 296 (488)
.+++|.++++++ ...|. ...|..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 358999999987 66675 556766665554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-13 Score=132.11 Aligned_cols=154 Identities=14% Similarity=0.034 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC----h
Q 036287 183 TTYNSLIAGLAMHGRSIEAVEMFREMINQGI-RPT----KVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ----I 253 (488)
Q Consensus 183 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~ 253 (488)
.++..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|...++...+...-.++ .
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 3566666666777777777777766654210 111 125556666677777777777777766532111111 4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcC------CCCc
Q 036287 254 EHYGCIVDLLSRVGRPEEAYDFITNM----KIAPD----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCR------SADS 319 (488)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~ 319 (488)
.++..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...++++++.. +...
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 347 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 56777788888888888888887765 11112 5677788888999999999999999988753 2234
Q ss_pred hhHHHHHHHHhcCCChH
Q 036287 320 GTYVLLSNAYASSGKWK 336 (488)
Q Consensus 320 ~~~~~l~~~~~~~g~~~ 336 (488)
.++..+...|...|+..
T Consensus 348 ~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 348 TARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhhHhH
Confidence 56667777777776653
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.8e-12 Score=126.88 Aligned_cols=327 Identities=10% Similarity=-0.006 Sum_probs=221.2
Q ss_pred HhHHHHHHHHhCCCCchhhHHHHHHHHHhcCCh---HHHHHHHhhCCCCCceeeHHHHHHHHHHcC-----CHHHHHHHH
Q 036287 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEF---KDAMQLFDEMPECNDVVASTVMINCYVEHG-----LVENAFEVF 73 (488)
Q Consensus 2 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~~~~m~~~~~~~~~~~li~~~~~~g-----~~~~A~~~f 73 (488)
|.+++....+.| ++..+..|..+|...|+. ++|...|++..+. ++..+..|...+...| +.++|.+.|
T Consensus 22 A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~ 97 (452)
T 3e4b_A 22 AQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-SPRAQARLGRLLAAKPGATEAEHHEAESLL 97 (452)
T ss_dssp HHHHHHHHHHHT---CCTGGGTCC-----------------------------CHHHHHHHHHTC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-CHHHHHHHHHHHHhCCCCCCcCHHHHHHHH
Confidence 456777777777 334455677778888888 9999999998877 5889999988676665 789999999
Q ss_pred hhcCCC-CHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc----hHHHHHHHHHHHHc
Q 036287 74 SRVKVK-DTVCWTAMIDGLVRNGEMAR---ALDLFREMQRDNVRPNEVTIVCVLSACSQLGA----LELGRWIHSYMGKH 145 (488)
Q Consensus 74 ~~~~~~-~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~----~~~a~~~~~~~~~~ 145 (488)
++...+ +..++..|...|...+...+ +.+.+.+....| +......+...+...+. .+.+..++....+
T Consensus 98 ~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~- 173 (452)
T 3e4b_A 98 KKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN- 173 (452)
T ss_dssp HHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT-
T ss_pred HHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc-
Confidence 987644 45588888888888766444 455555555544 34455566677777674 4444444444433
Q ss_pred CCCCcHhHHHHHHHHHHhcC---CHHHHHHHHHhccc---CCHHHHHHHHHHHHhc----CChhHHHHHHHHHHHcCCCC
Q 036287 146 RIDLNHIVGGALINMYSRCG---DIDKALQVFEEMKE---RDVTTYNSLIAGLAMH----GRSIEAVEMFREMINQGIRP 215 (488)
Q Consensus 146 g~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p 215 (488)
.++..+..|..+|.+.| +.++|.+.|++..+ ++...+..+...|... +++++|+..|++.. . -
T Consensus 174 ---~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g 246 (452)
T 3e4b_A 174 ---TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---G 246 (452)
T ss_dssp ---TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---G
T ss_pred ---CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---C
Confidence 23347888999999999 99999999998765 3445556777777554 68999999999987 3 3
Q ss_pred CHHHHHHHHHH-H--hccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcC-----ChHHHHHHHHhCCCCCCHHH
Q 036287 216 TKVTFVGVLNA-C--SHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVG-----RPEEAYDFITNMKIAPDHIM 287 (488)
Q Consensus 216 ~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~p~~~~ 287 (488)
+...+..+... + ...++.++|..+|.+..+. | +...+..|..+|. .| ++++|.+.|++.- .-++..
T Consensus 247 ~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A 320 (452)
T 3e4b_A 247 YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAA 320 (452)
T ss_dssp STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHH
T ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHH
Confidence 34455555555 3 5689999999999998853 3 5667778888887 55 9999999999988 667888
Q ss_pred HHHHHHHHHH----hCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhc----CCChHHHHHHHHHHHhCCCc
Q 036287 288 LGSLLSACKI----HGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYAS----SGKWKEAVQIRAKMKEAGVQ 351 (488)
Q Consensus 288 ~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~ 351 (488)
+..|...|.. ..+.++|...+++..+.+ ++.....|..+|.. ..+.++|...++...+.|..
T Consensus 321 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 321 DYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp HHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 8888877765 349999999999998865 45678889989875 45899999999999887753
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.2e-13 Score=128.93 Aligned_cols=265 Identities=11% Similarity=0.013 Sum_probs=188.9
Q ss_pred eHHHHHHHHHHcCCHHHHHHHHhhcC---CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHH
Q 036287 52 ASTVMINCYVEHGLVENAFEVFSRVK---VKDT----VCWTAMIDGLVRNGEMARALDLFREMQRD----NV-RPNEVTI 119 (488)
Q Consensus 52 ~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~ 119 (488)
.+..+...+...|++++|...|++.. ..+. .+|..+...|...|++++|+..|++..+. +- +....++
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 34455667777888888888887754 2232 46777888888888888888888776542 11 1234566
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHc----C-CCCcHhHHHHHHHHHHhcCC-----------------HHHHHHHHHhc
Q 036287 120 VCVLSACSQLGALELGRWIHSYMGKH----R-IDLNHIVGGALINMYSRCGD-----------------IDKALQVFEEM 177 (488)
Q Consensus 120 ~~ll~~~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~~~~li~~y~~~g~-----------------~~~A~~~~~~~ 177 (488)
..+...+...|++++|...+..+.+. + .+....++..+...|...|+ +++|...|++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 67777788888888888888776554 1 12234567778888888888 88888887765
Q ss_pred cc-----C----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHhc
Q 036287 178 KE-----R----DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGI-RPT----KVTFVGVLNACSHGGLVDLGFEIFQSM 243 (488)
Q Consensus 178 ~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~ 243 (488)
.+ . ...+|..+...|...|++++|+..|++..+... .++ ...+..+...+...|++++|...++..
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 43 1 234677888888999999999999988775311 111 226677788889999999999998887
Q ss_pred ccccCcc----cChhhHHHHHHHHHhcCChHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHHhCChhHHHHHHHHH
Q 036287 244 TRDYGIE----PQIEHYGCIVDLLSRVGRPEEAYDFITNM-KI---APD----HIMLGSLLSACKIHGKLQLGEQIAKRL 311 (488)
Q Consensus 244 ~~~~~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~ 311 (488)
.+...-. .....+..+...|...|++++|.+.+++. .. .++ ..++..+...+...|++++|...++++
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 6421111 11467788889999999999999998876 11 111 457788888999999999999999999
Q ss_pred HhcCC
Q 036287 312 LDCRS 316 (488)
Q Consensus 312 ~~~~p 316 (488)
+++.+
T Consensus 370 l~~~~ 374 (411)
T 4a1s_A 370 LQLAX 374 (411)
T ss_dssp HHHCC
T ss_pred HHHHh
Confidence 88764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.9e-11 Score=113.24 Aligned_cols=218 Identities=11% Similarity=0.055 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hcCch-------HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 036287 98 ARALDLFREMQRDNVRPNEVTIVCVLSACS-------QLGAL-------ELGRWIHSYMGKHRIDLNHIVGGALINMYSR 163 (488)
Q Consensus 98 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 163 (488)
++|+.+|++..... +-+...|..++..+. ..|+. ++|..+++..++.-.+.+..+|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777777642 345666666666554 34665 7888888888773224456678888888888
Q ss_pred cCCHHHHHHHHHhccc--C-CHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hccCCHHHHHH
Q 036287 164 CGDIDKALQVFEEMKE--R-DVT-TYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNAC-SHGGLVDLGFE 238 (488)
Q Consensus 164 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~ 238 (488)
.|++++|.++|++..+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888887764 2 333 78888888888888888888888888753 23334444333322 23688888888
Q ss_pred HHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 036287 239 IFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-K---IAP--DHIMLGSLLSACKIHGKLQLGEQIAKRLL 312 (488)
Q Consensus 239 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 312 (488)
+|+...+. .+.+...|..++..+.+.|++++|..+|++. . +.| ....|..++......|+.+.|..+++++.
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888753 2234677888888888888888888888877 2 354 36678888888888888888888888888
Q ss_pred hcCCCCc
Q 036287 313 DCRSADS 319 (488)
Q Consensus 313 ~~~p~~~ 319 (488)
+..|.+.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 8888654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.9e-13 Score=133.20 Aligned_cols=208 Identities=8% Similarity=-0.075 Sum_probs=168.2
Q ss_pred hHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH-HHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 036287 132 LELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDI-DKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFRE 207 (488)
Q Consensus 132 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 207 (488)
++.+.+.+....+.. +.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445555555544432 34667777778888888888 888888877653 3567888888888888999999999988
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcc---------CCHHHHHHHHHhcccccCccc-ChhhHHHHHHHHHhc--------CCh
Q 036287 208 MINQGIRPTKVTFVGVLNACSHG---------GLVDLGFEIFQSMTRDYGIEP-QIEHYGCIVDLLSRV--------GRP 269 (488)
Q Consensus 208 m~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~--------g~~ 269 (488)
..+. .|+...+..+..++... |++++|...|++..+. .| +...|..+..+|... |++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 8874 57777788888888888 8999999999888742 34 477888888888888 889
Q ss_pred HHHHHHHHhC-CCCC----CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHH
Q 036287 270 EEAYDFITNM-KIAP----DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAK 344 (488)
Q Consensus 270 ~~A~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 344 (488)
++|.+.|++. ...| +...|..+..++...|++++|...++++++.+|.++.++..+..++...|++++|.+.+.+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999887 4455 6889999999999999999999999999999999999999999999999999999876544
Q ss_pred H
Q 036287 345 M 345 (488)
Q Consensus 345 m 345 (488)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.9e-12 Score=120.68 Aligned_cols=133 Identities=14% Similarity=0.051 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC----hh
Q 036287 184 TYNSLIAGLAMHGRSIEAVEMFREMINQGI-RPT----KVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ----IE 254 (488)
Q Consensus 184 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 254 (488)
++..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|...++...+...-.++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 555666666667777777777766654210 011 124555666667777777777777666532111111 45
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCC
Q 036287 255 HYGCIVDLLSRVGRPEEAYDFITNM-KI---APD----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRS 316 (488)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 316 (488)
.+..+...|...|++++|...+++. .. .++ ..++..+...+...|++++|...++++++..+
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 6667777888888888888877765 11 111 45677788888999999999999999888654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.45 E-value=7.8e-12 Score=107.36 Aligned_cols=165 Identities=14% Similarity=0.089 Sum_probs=110.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHH
Q 036287 181 DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIV 260 (488)
Q Consensus 181 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 260 (488)
+...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 34455556666666666666666666665532 223445555556666666666666666665531 122345555566
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHH
Q 036287 261 DLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEA 338 (488)
Q Consensus 261 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 338 (488)
..+...++++.|.+.+.+. ...| +...+..+...+...|++++|+..++++++.+|.++.+|..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 6666777777777776665 2233 4667777788888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhC
Q 036287 339 VQIRAKMKEA 348 (488)
Q Consensus 339 ~~~~~~m~~~ 348 (488)
.+.+++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 8888887653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.7e-12 Score=122.50 Aligned_cols=158 Identities=9% Similarity=-0.005 Sum_probs=70.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCC------CCcHhHHH
Q 036287 87 MIDGLVRNGEMARALDLFREMQRD----NVRP-NEVTIVCVLSACSQLGALELGRWIHSYMGKHRI------DLNHIVGG 155 (488)
Q Consensus 87 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~------~~~~~~~~ 155 (488)
....+...|++++|+..|++..+. +-++ ...++..+...+...|+++.|...+....+... +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 334455556666666666655442 1011 123444555555555555555555555443210 00123344
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccc-----CCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHc----CC-CCCHHHHH
Q 036287 156 ALINMYSRCGDIDKALQVFEEMKE-----RDV----TTYNSLIAGLAMHGRSIEAVEMFREMINQ----GI-RPTKVTFV 221 (488)
Q Consensus 156 ~li~~y~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~~~t~~ 221 (488)
.+...|...|++++|...|++..+ ++. .+++.+...|...|++++|+..|++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 445555555555555555544332 111 23444455555555555555555544431 11 11223333
Q ss_pred HHHHHHhccCCHHHHHHHHHhcc
Q 036287 222 GVLNACSHGGLVDLGFEIFQSMT 244 (488)
Q Consensus 222 ~ll~a~~~~g~~~~a~~~~~~~~ 244 (488)
.+...+...|++++|...++...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44444444444444444444433
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.42 E-value=5.1e-11 Score=111.54 Aligned_cols=210 Identities=11% Similarity=0.081 Sum_probs=116.3
Q ss_pred HHHHHHHhhcC---CCCHHHHHHHHHHHH-------HcCCH-------HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 036287 67 ENAFEVFSRVK---VKDTVCWTAMIDGLV-------RNGEM-------ARALDLFREMQRDNVRP-NEVTIVCVLSACSQ 128 (488)
Q Consensus 67 ~~A~~~f~~~~---~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~ 128 (488)
++|..+|++.. +.+...|..++..+. +.|++ ++|..+|++..+. +.| +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHh
Confidence 34555555443 234555555555544 23554 5666666666552 123 33455566666666
Q ss_pred cCchHHHHHHHHHHHHcCCCCcHh-HHHHHHHHHHhcCCHHHHHHHHHhcccC---CHHHHHHHHHHH-HhcCChhHHHH
Q 036287 129 LGALELGRWIHSYMGKHRIDLNHI-VGGALINMYSRCGDIDKALQVFEEMKER---DVTTYNSLIAGL-AMHGRSIEAVE 203 (488)
Q Consensus 129 ~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~-~~~g~~~~A~~ 203 (488)
.|++++|..+|+.+++.. +.+.. +|..++..+.+.|++++|.++|++..+. +...|....... ...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666666532 11222 5666666666666666666666665531 223333222221 12466777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCccc--ChhhHHHHHHHHHhcCChHHHHHHHHhC
Q 036287 204 MFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEP--QIEHYGCIVDLLSRVGRPEEAYDFITNM 279 (488)
Q Consensus 204 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m 279 (488)
+|++..+.. +-+...+..++..+...|++++|..+|+...+...++| ....|..++..+.+.|+.++|..+++++
T Consensus 191 ~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777666531 22445555666666666777777777776664322344 2456666667777777777777776665
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-11 Score=119.48 Aligned_cols=225 Identities=8% Similarity=-0.047 Sum_probs=173.5
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHc----CCCC-cHhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CC-----HHHHH
Q 036287 122 VLSACSQLGALELGRWIHSYMGKH----RIDL-NHIVGGALINMYSRCGDIDKALQVFEEMKE-----RD-----VTTYN 186 (488)
Q Consensus 122 ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~-----~~~~~ 186 (488)
....+...|++++|...+..+.+. +-++ ...++..+...|...|+++.|...+++..+ ++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556778999999999999999774 2122 356788899999999999999999888653 22 35788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHhccccc---Cc-ccChhhHH
Q 036287 187 SLIAGLAMHGRSIEAVEMFREMINQGI-RPT----KVTFVGVLNACSHGGLVDLGFEIFQSMTRDY---GI-EPQIEHYG 257 (488)
Q Consensus 187 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~-~p~~~~~~ 257 (488)
.+...|...|++++|+..|++..+... .++ ..++..+...|...|++++|...+....+-. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 899999999999999999999875311 122 2467788899999999999999999887511 22 23367888
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHHhCC---hhHHHHHHHHHHhcCCCCchhHHHHHH
Q 036287 258 CIVDLLSRVGRPEEAYDFITNM-KI-----APD-HIMLGSLLSACKIHGK---LQLGEQIAKRLLDCRSADSGTYVLLSN 327 (488)
Q Consensus 258 ~li~~~~~~g~~~~A~~~~~~m-~~-----~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~ 327 (488)
.+...|.+.|++++|.+.+++. .+ .|. ...+..+...+...|+ +++|...+++. ...|....++..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 9999999999999999999886 11 122 2335667777788888 67777777766 222444567889999
Q ss_pred HHhcCCChHHHHHHHHHHHh
Q 036287 328 AYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 328 ~~~~~g~~~~a~~~~~~m~~ 347 (488)
.|...|++++|.+.+++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998865
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.9e-11 Score=104.93 Aligned_cols=159 Identities=13% Similarity=0.073 Sum_probs=96.7
Q ss_pred eeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036287 50 VVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSAC 126 (488)
Q Consensus 50 ~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 126 (488)
+.+|..+...|.+.|++++|++.|++.. +.+..+|..+...|.+.|++++|+..+.+..... +.+...+..+...+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 3445555555555555555555555543 3355566666666666666666666666665542 33445555555666
Q ss_pred HhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHH
Q 036287 127 SQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVE 203 (488)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 203 (488)
...++++.+...+..+.+.. +.+..++..+..+|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|++
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence 66666666666666666554 33455666666666666666666666666543 345566666666666677777777
Q ss_pred HHHHHHH
Q 036287 204 MFREMIN 210 (488)
Q Consensus 204 l~~~m~~ 210 (488)
.|++..+
T Consensus 163 ~~~~al~ 169 (184)
T 3vtx_A 163 YFKKALE 169 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7666665
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=9e-13 Score=123.07 Aligned_cols=243 Identities=10% Similarity=0.004 Sum_probs=140.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHc------C
Q 036287 80 DTVCWTAMIDGLVRNGEMARALDLFREMQRD-------NVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKH------R 146 (488)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g 146 (488)
+..+|..+...|...|++++|+.+|+++.+. ..+....++..+...+...|++++|...+..+++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3567889999999999999999999998762 22334566777788888888888888888887664 2
Q ss_pred C-CCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccC-----------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc---
Q 036287 147 I-DLNHIVGGALINMYSRCGDIDKALQVFEEMKER-----------DVTTYNSLIAGLAMHGRSIEAVEMFREMINQ--- 211 (488)
Q Consensus 147 ~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--- 211 (488)
- +....++..+...|...|++++|...|++..+. ...++..+...|...|++++|+..|+++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 223556677777888888888888777765421 2245666677777777777777777776653
Q ss_pred ---CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHhccccc------CcccChhhHHHHHHHHHhcCChHHHHHHHHhCCC
Q 036287 212 ---GIRPT-KVTFVGVLNACSHGGLVDLGFEIFQSMTRDY------GIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKI 281 (488)
Q Consensus 212 ---g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 281 (488)
+..|+ ..++..+..++...|++++|...++.+.+.. ...+.......
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------------- 242 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM----------------------- 242 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH-----------------------
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH-----------------------
Confidence 11222 2344555566666666666666666665310 00010000000
Q ss_pred CCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 282 APDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 282 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
....+..+...+...+.+..+...++......|....++..++.+|...|++++|.+.+++..+
T Consensus 243 --~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 243 --HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0111222222333444555555556665555565666666677777777777777776666543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.2e-12 Score=120.39 Aligned_cols=247 Identities=12% Similarity=0.057 Sum_probs=170.8
Q ss_pred ceeeHHHHHHHHHHcCCHHHHHHHHhhcCC--------C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------C
Q 036287 49 DVVASTVMINCYVEHGLVENAFEVFSRVKV--------K---DTVCWTAMIDGLVRNGEMARALDLFREMQRD------N 111 (488)
Q Consensus 49 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g 111 (488)
...+|..+...|...|++++|..+|+++.. . ...+|..+...|...|++++|+..|++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 466888999999999999999999988753 2 3457889999999999999999999998764 2
Q ss_pred C-CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHc------CC-CCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccC---
Q 036287 112 V-RPNEVTIVCVLSACSQLGALELGRWIHSYMGKH------RI-DLNHIVGGALINMYSRCGDIDKALQVFEEMKER--- 180 (488)
Q Consensus 112 ~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--- 180 (488)
- +....++..+...+...|++++|...+..+.+. +. +....++..+...|...|++++|...|+++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2 223567788889999999999999999998765 22 234567888999999999999999999887542
Q ss_pred -----C---HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC
Q 036287 181 -----D---VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ 252 (488)
Q Consensus 181 -----~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 252 (488)
+ ..++..+...|...|++++|...|+++.+.. |+. .+..+- .... .+...
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~-~~~~~~---~~~~----------------~~~~~ 243 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA--HER-EFGSVD---DENK----------------PIWMH 243 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHH-HHC---------C----------------CHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHh-cCCCCC---cchH----------------HHHHH
Confidence 2 3578889999999999999999999998741 110 000000 0000 00111
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC
Q 036287 253 IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSA 317 (488)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 317 (488)
...+..+...+...+.+.+|...++.. ...| +..+|..+...+...|++++|...+++++++.|.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 244 AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 222333344445556666666666665 2233 3567888888888999999999999988876553
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.36 E-value=5.9e-10 Score=107.14 Aligned_cols=262 Identities=12% Similarity=0.004 Sum_probs=161.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCchHHHHHHHHHHHHcCC---CC--cHhHHHH
Q 036287 86 AMIDGLVRNGEMARALDLFREMQRDNVRPNEV----TIVCVLSACSQLGALELGRWIHSYMGKHRI---DL--NHIVGGA 156 (488)
Q Consensus 86 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---~~--~~~~~~~ 156 (488)
.+...+...|++++|...+++........+.. ++..+...+...|+++.|...+....+... .+ ...+...
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445566777777777777766643222222 344445566667777777777766654210 11 1223455
Q ss_pred HHHHHHhcCCHHHHHHHHHhccc-------C----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--C--CHHHHH
Q 036287 157 LINMYSRCGDIDKALQVFEEMKE-------R----DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIR--P--TKVTFV 221 (488)
Q Consensus 157 li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~t~~ 221 (488)
+...|...|++++|...+++..+ + ....+..+...+...|++++|...+++....... + ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 66777777888777777766542 1 1234555667777788888888888877653211 1 123455
Q ss_pred HHHHHHhccCCHHHHHHHHHhcccccCcccChhhHH-----HHHHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHH
Q 036287 222 GVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYG-----CIVDLLSRVGRPEEAYDFITNM-KIAPD-----HIMLGS 290 (488)
Q Consensus 222 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ 290 (488)
.+...+...|++++|...++.......-......+. ..+..+...|++++|...+++. ...|. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 666677778888888888877653211111111111 2334467888888888888877 22221 234566
Q ss_pred HHHHHHHhCChhHHHHHHHHHHhcCCC-----C-chhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 291 LLSACKIHGKLQLGEQIAKRLLDCRSA-----D-SGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 291 ll~~~~~~g~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
+...+...|++++|...++++.+..+. + ..++..+..+|...|+.++|...+++...
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 777888889999998888888764321 1 13666778888899999999998887754
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.5e-10 Score=110.18 Aligned_cols=301 Identities=11% Similarity=0.052 Sum_probs=166.7
Q ss_pred CCCCchhhHHHHHHHH--HhcCChHHHHHHHhhCCC-------CCceeeHHHHHHHH--HHcCC---HH---------HH
Q 036287 13 GLRSNRSTRLKLVELY--GKCGEFKDAMQLFDEMPE-------CNDVVASTVMINCY--VEHGL---VE---------NA 69 (488)
Q Consensus 13 g~~~~~~~~~~li~~y--~~~g~~~~A~~~~~~m~~-------~~~~~~~~~li~~~--~~~g~---~~---------~A 69 (488)
...|+..+.+.|-..| .+.+++++|.++++++.. ..++..|-.++..- .-.+. .+ ++
T Consensus 5 ~~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~ 84 (378)
T 3q15_A 5 QAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTEL 84 (378)
T ss_dssp -CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHH
Confidence 3567788888888888 789999999998876533 11233333333321 01111 11 33
Q ss_pred HHHHhhcCCC-C-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCchHHHHHHH
Q 036287 70 FEVFSRVKVK-D-T---VCWTAMIDGLVRNGEMARALDLFREMQRDNV-RPN----EVTIVCVLSACSQLGALELGRWIH 139 (488)
Q Consensus 70 ~~~f~~~~~~-~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~ 139 (488)
.+-.+....+ + . ..|......+...|++++|+..|++..+.-. .+| ..++..+...+...|+++.|...+
T Consensus 85 l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~ 164 (378)
T 3q15_A 85 LETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHI 164 (378)
T ss_dssp HHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 3333222222 1 1 1233445566788888888888888765311 122 345666777778888888888877
Q ss_pred HHHHHcCC-----C-CcHhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CC----HHHHHHHHHHHHhcCChhHHHHH
Q 036287 140 SYMGKHRI-----D-LNHIVGGALINMYSRCGDIDKALQVFEEMKE-----RD----VTTYNSLIAGLAMHGRSIEAVEM 204 (488)
Q Consensus 140 ~~~~~~g~-----~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l 204 (488)
....+... . ....+++.+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|+..
T Consensus 165 ~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~ 244 (378)
T 3q15_A 165 LQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH 244 (378)
T ss_dssp HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 77654311 1 1244566677777777777777777766543 12 23566667777777777777777
Q ss_pred HHHHHHc----CCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC---hhhHHHHHHHHHhcCC---hHHHHH
Q 036287 205 FREMINQ----GIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ---IEHYGCIVDLLSRVGR---PEEAYD 274 (488)
Q Consensus 205 ~~~m~~~----g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~ 274 (488)
|++..+. +.+....++..+...+...|++++|...++...+...-.++ ...+..+...|...|+ +.+|+.
T Consensus 245 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 245 FQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 7776651 11222445555666666666666666666665532111111 2234444444555555 555555
Q ss_pred HHHhCCCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHh
Q 036287 275 FITNMKIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLD 313 (488)
Q Consensus 275 ~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 313 (488)
.+++.+..|+ ...+..+...|...|++++|...++++.+
T Consensus 325 ~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 325 YFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555433222 22333444455555555555555554443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.3e-11 Score=121.08 Aligned_cols=207 Identities=10% Similarity=-0.026 Sum_probs=173.0
Q ss_pred CHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHH
Q 036287 65 LVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEM-ARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHS 140 (488)
Q Consensus 65 ~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 140 (488)
.+++|...++... ..+...|..+...|...|++ ++|++.|++..+.. +-+...+..+..++...|++++|.+.++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3566777776543 34677888999999999999 99999999988864 3457888889999999999999999999
Q ss_pred HHHHcCCCCcHhHHHHHHHHHHhc---------CCHHHHHHHHHhccc---CCHHHHHHHHHHHHhc--------CChhH
Q 036287 141 YMGKHRIDLNHIVGGALINMYSRC---------GDIDKALQVFEEMKE---RDVTTYNSLIAGLAMH--------GRSIE 200 (488)
Q Consensus 141 ~~~~~g~~~~~~~~~~li~~y~~~---------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~--------g~~~~ 200 (488)
.+++.. |+...+..+..+|... |++++|.+.|++..+ .+...|..+..+|... |++++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 998875 5568888899999998 999999999998764 4678899999999888 89999
Q ss_pred HHHHHHHHHHcCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhcCChHHHHHH
Q 036287 201 AVEMFREMINQGIRP----TKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAYDF 275 (488)
Q Consensus 201 A~~l~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 275 (488)
|+..|++..+. .| +...+..+..+|...|++++|.+.|+...+ +.|+ ...+..+..++...|++++|.+.
T Consensus 240 A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 240 ALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA---LDPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999885 44 677888899999999999999999999874 3444 66788899999999999999988
Q ss_pred HHhC
Q 036287 276 ITNM 279 (488)
Q Consensus 276 ~~~m 279 (488)
+.++
T Consensus 315 ~~~~ 318 (474)
T 4abn_A 315 KGKT 318 (474)
T ss_dssp TTTC
T ss_pred hccc
Confidence 8776
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-11 Score=126.88 Aligned_cols=160 Identities=17% Similarity=0.212 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHHHHH
Q 036287 183 TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRP-TKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIV 260 (488)
Q Consensus 183 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li 260 (488)
.+|+.+...|.+.|++++|++.|++..+. .| +...+..+..+|.+.|++++|.+.|++..+ +.|+ ...|..+.
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nLg 84 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 34555555555555555555555555542 22 234455555555555555555555555542 2333 45566666
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHH
Q 036287 261 DLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEA 338 (488)
Q Consensus 261 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 338 (488)
.+|.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++++|.++.++..|+.+|...|+|++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 6666666666666666655 3444 3667777777777777888888888888887777777777888888888887777
Q ss_pred HHHHHHHHh
Q 036287 339 VQIRAKMKE 347 (488)
Q Consensus 339 ~~~~~~m~~ 347 (488)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.31 E-value=6.3e-11 Score=101.11 Aligned_cols=160 Identities=14% Similarity=0.077 Sum_probs=98.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 036287 152 IVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACS 228 (488)
Q Consensus 152 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 228 (488)
..+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|...++++.+.. +.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~----------- 76 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNV----------- 76 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCH-----------
Confidence 3445556666666666666666666553 244555666666666666666666666655531 2223
Q ss_pred ccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHhCChhHHHH
Q 036287 229 HGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-K-IAPDHIMLGSLLSACKIHGKLQLGEQ 306 (488)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~ 306 (488)
..+..+...|...|++++|.+.++++ . .+.+...|..+...+...|++++|..
T Consensus 77 -------------------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 131 (186)
T 3as5_A 77 -------------------------KVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAID 131 (186)
T ss_dssp -------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHH
Confidence 34444444555555555555555544 1 12245666666777777777777777
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 307 IAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 307 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
.++++.+..|.++.++..++.+|...|++++|.+.+++..+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 132 SFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 777777777777777777777777777777777777776553
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.28 E-value=6.4e-10 Score=94.75 Aligned_cols=156 Identities=15% Similarity=0.095 Sum_probs=87.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 036287 53 STVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQL 129 (488)
Q Consensus 53 ~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 129 (488)
|..+...+...|++++|...|+++. +.+..+|..+...+...|++++|+..++++.+.. +.+...+..+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHh
Confidence 3444444555555555555555443 1245556666666666666666666666665542 33455555555666666
Q ss_pred CchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHH
Q 036287 130 GALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFR 206 (488)
Q Consensus 130 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 206 (488)
|++++|.+.+..+.+.. +.+..++..+..+|...|++++|...|+++.+ .+...|..+...+...|++++|...++
T Consensus 90 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666666655543 33445555555566666666666666555442 234555555556666666666666666
Q ss_pred HHHH
Q 036287 207 EMIN 210 (488)
Q Consensus 207 ~m~~ 210 (488)
+..+
T Consensus 169 ~~~~ 172 (186)
T 3as5_A 169 KANE 172 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.8e-10 Score=100.41 Aligned_cols=205 Identities=8% Similarity=0.005 Sum_probs=157.9
Q ss_pred CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHH
Q 036287 113 RPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLI 189 (488)
Q Consensus 113 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li 189 (488)
+.|+..+......+...|++++|...+..+++...+++...+..+..+|...|++++|.+.|++..+ .+...|..+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 3467888889999999999999999999999887546777777799999999999999999998765 3457889999
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCC-H-------HHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC---hhhHHH
Q 036287 190 AGLAMHGRSIEAVEMFREMINQGIRPT-K-------VTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ---IEHYGC 258 (488)
Q Consensus 190 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~ 258 (488)
..|...|++++|+..|++..+. .|+ . ..+..+...+...|++++|...|+.+.+ +.|+ ...+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHH
Confidence 9999999999999999999885 343 3 3466777788889999999999999984 3554 567777
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 036287 259 IVDLLSRVGRPEEAYDFITNM-KI-APDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAY 329 (488)
Q Consensus 259 li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 329 (488)
+...|...|+. .++++ .+ ..+...+.... ....+.+++|...+++++++.|.++.+...+....
T Consensus 159 l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 159 LGVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 88888766543 22222 11 12344444333 33456789999999999999999987766665543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-09 Score=104.21 Aligned_cols=233 Identities=11% Similarity=0.004 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCchHHHHHHHHHHHHc----CCC--C-c
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRDNV-RPNE----VTIVCVLSACSQLGALELGRWIHSYMGKH----RID--L-N 150 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~--~-~ 150 (488)
+++.+...+...|++++|...+++...... .++. .++..+...+...|++++|...+....+. +.+ | .
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 345555666666677766666666543110 1111 22344555566677777777666665442 211 2 2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccc--C------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHH
Q 036287 151 HIVGGALINMYSRCGDIDKALQVFEEMKE--R------DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTK-VTFV 221 (488)
Q Consensus 151 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~ 221 (488)
..++..+...|...|++++|...+++..+ + ...++..+...+...|++++|...+++.......++. ..+.
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 214 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 214 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH
Confidence 33455566777777777777777766542 1 1345667777788888888888888877653211111 1111
Q ss_pred -----HHHHHHhccCCHHHHHHHHHhcccccCccc--ChhhHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCH-H
Q 036287 222 -----GVLNACSHGGLVDLGFEIFQSMTRDYGIEP--QIEHYGCIVDLLSRVGRPEEAYDFITNM-------KIAPDH-I 286 (488)
Q Consensus 222 -----~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~-~ 286 (488)
.....+...|++++|...+........-.+ ....+..+...+...|++++|...+++. +..++. .
T Consensus 215 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 294 (373)
T 1hz4_A 215 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 294 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHH
Confidence 222346678888888888888764211110 1224567778888889999888888765 111122 2
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhcC
Q 036287 287 MLGSLLSACKIHGKLQLGEQIAKRLLDCR 315 (488)
Q Consensus 287 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 315 (488)
.+..+..++...|+.++|...+++..+..
T Consensus 295 ~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 295 NLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 55666777888899999999998887754
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.7e-10 Score=109.92 Aligned_cols=286 Identities=8% Similarity=-0.004 Sum_probs=195.8
Q ss_pred HHcCCHHHHHHHHhhcC--------CCCHHHHHHHHHHH--HHcCCHHHHH---------HHHHHHHHCCCCCCH-H---
Q 036287 61 VEHGLVENAFEVFSRVK--------VKDTVCWTAMIDGL--VRNGEMARAL---------DLFREMQRDNVRPNE-V--- 117 (488)
Q Consensus 61 ~~~g~~~~A~~~f~~~~--------~~~~~~~~~li~~~--~~~g~~~~A~---------~~~~~m~~~g~~p~~-~--- 117 (488)
.+.+++++|.++++++. ..++..|-.|+..- .-.+....+. ..++.+.....+.+. .
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~ 102 (378)
T 3q15_A 23 IRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYY 102 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHH
Confidence 78899999999988753 12344444444421 1112222222 555555432111111 1
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHcC--CC---CcHhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CC-----H
Q 036287 118 TIVCVLSACSQLGALELGRWIHSYMGKHR--ID---LNHIVGGALINMYSRCGDIDKALQVFEEMKE-----RD-----V 182 (488)
Q Consensus 118 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~-----~ 182 (488)
.+......+...|++++|...+..+.+.. .+ ....++..+...|...|+++.|...+++..+ ++ .
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 22334455678999999999999987642 11 1345778899999999999999998887653 12 3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHhccccc---CcccChh
Q 036287 183 TTYNSLIAGLAMHGRSIEAVEMFREMINQ----GIRP-TKVTFVGVLNACSHGGLVDLGFEIFQSMTRDY---GIEPQIE 254 (488)
Q Consensus 183 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~ 254 (488)
.+++.+...|...|++++|++.|++..+. +..+ ...++..+..+|...|++++|...+....+-. +.+....
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 57888999999999999999999988763 1111 13466778888999999999999999887511 1122367
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHHhCC---hhHHHHHHHHHHhcCCCCchhHHH
Q 036287 255 HYGCIVDLLSRVGRPEEAYDFITNM----KI--APD-HIMLGSLLSACKIHGK---LQLGEQIAKRLLDCRSADSGTYVL 324 (488)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~ 324 (488)
++..+...|.+.|++++|.+.+++. +. .|. ...+..+...+...++ +++|...+++.. ..|.....+..
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~ 341 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHH
Confidence 7888999999999999999999886 21 222 3445555556666677 677777766521 22334457788
Q ss_pred HHHHHhcCCChHHHHHHHHHHHh
Q 036287 325 LSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 325 l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
++..|...|++++|.+.+++..+
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999998754
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=3.7e-10 Score=117.17 Aligned_cols=159 Identities=12% Similarity=0.100 Sum_probs=109.9
Q ss_pred eeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036287 50 VVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSAC 126 (488)
Q Consensus 50 ~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 126 (488)
..+|+.|...|.+.|++++|++.|++.. +.+..+|+.|...|.+.|++++|+..|++.++.. +-+...|..+..++
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4455566666666666666666665543 3356677777777777777777777777777643 23456777777777
Q ss_pred HhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHH
Q 036287 127 SQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVE 203 (488)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 203 (488)
...|++++|.+.++++++.. +.+...++.|..+|.+.|++++|++.|++..+ .+...|..+...|...|++++|.+
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~ 166 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDE 166 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHH
Confidence 77777777777777777664 34566777777777778888888777777653 356677777888888888888877
Q ss_pred HHHHHHH
Q 036287 204 MFREMIN 210 (488)
Q Consensus 204 l~~~m~~ 210 (488)
.+++..+
T Consensus 167 ~~~kal~ 173 (723)
T 4gyw_A 167 RMKKLVS 173 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.8e-10 Score=99.71 Aligned_cols=188 Identities=13% Similarity=0.023 Sum_probs=131.7
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhccc----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHH
Q 036287 149 LNHIVGGALINMYSRCGDIDKALQVFEEMKE----RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRP-TKVTFVGV 223 (488)
Q Consensus 149 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~l 223 (488)
.++..+..+...|...|++++|...|++..+ ++...|..+..++...|++++|+..|++..+. .| +...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 3456777778888888888888888887653 56667777888888888888888888888874 34 34566677
Q ss_pred HHHHhccCCHHHHHHHHHhcccccCcccC-h-------hhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHH
Q 036287 224 LNACSHGGLVDLGFEIFQSMTRDYGIEPQ-I-------EHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD---HIMLGSL 291 (488)
Q Consensus 224 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~l 291 (488)
..++...|++++|...++...+. .|+ . ..|..+...+...|++++|++.+++. ...|+ ...|..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 77788888888888888887743 333 3 45667777777888888888888776 55665 3556666
Q ss_pred HHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 292 LSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 292 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
...+.. .+...++++..+.+.+...|..+. ....+.+++|...+++..+.
T Consensus 160 ~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 160 GVLFYN-----NGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHH-----HHHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 666643 344556666666666555554433 33445679999999988764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.17 E-value=4e-08 Score=100.89 Aligned_cols=344 Identities=7% Similarity=-0.022 Sum_probs=226.9
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCC---HHHHHHHHhhcC--
Q 036287 5 IHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGL---VENAFEVFSRVK-- 77 (488)
Q Consensus 5 i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~---~~~A~~~f~~~~-- 77 (488)
.++..+... +-|..+|..++..+.+.+.++.|..+|+++.. +.....|...+..-.+.|+ ++.+..+|++..
T Consensus 54 ~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~ 132 (679)
T 4e6h_A 54 KLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSK 132 (679)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHh
Confidence 345555555 46888999999999999999999999998866 3456788888888888888 999999999865
Q ss_pred C---CCHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHH-CCC-CCC-HHHHHHHHHHHH---------hcCchHH
Q 036287 78 V---KDTVCWTAMIDGLVRNGEM--------ARALDLFREMQR-DNV-RPN-EVTIVCVLSACS---------QLGALEL 134 (488)
Q Consensus 78 ~---~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~-~~t~~~ll~~~~---------~~~~~~~ 134 (488)
. |++..|..-+.-..+.++. +...++|++.+. .|. .|+ ...|...+.-.. ..+.++.
T Consensus 133 ~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~ 212 (679)
T 4e6h_A 133 ELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQY 212 (679)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHH
Confidence 3 7888888887766555443 334477777654 465 454 456666554332 2335677
Q ss_pred HHHHHHHHHHcCCCCcHhHHHHHHH---HH----------HhcCCHHHHH------------------------------
Q 036287 135 GRWIHSYMGKHRIDLNHIVGGALIN---MY----------SRCGDIDKAL------------------------------ 171 (488)
Q Consensus 135 a~~~~~~~~~~g~~~~~~~~~~li~---~y----------~~~g~~~~A~------------------------------ 171 (488)
+..+|..++......-..+|..... .+ -...+++.|.
T Consensus 213 ~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p 292 (679)
T 4e6h_A 213 IRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLP 292 (679)
T ss_dssp HHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSC
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCC
Confidence 7788887775322211222211100 00 0000111122
Q ss_pred -------------------------------------HHHHhccc---CCHHHHHHHHHHHHhcCChhHHH-HHHHHHHH
Q 036287 172 -------------------------------------QVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAV-EMFREMIN 210 (488)
Q Consensus 172 -------------------------------------~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~ 210 (488)
.+|++... .+...|-..+.-+...|+.++|. ++|++...
T Consensus 293 ~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~ 372 (679)
T 4e6h_A 293 KPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQ 372 (679)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 22333221 23445666666667788888896 99999887
Q ss_pred cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccC--c------ccC------------hhhHHHHHHHHHhcCChH
Q 036287 211 QGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYG--I------EPQ------------IEHYGCIVDLLSRVGRPE 270 (488)
Q Consensus 211 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~------~p~------------~~~~~~li~~~~~~g~~~ 270 (488)
. .+.+...+...+......|+++.|.++|+.+..... + .|+ ..+|...+....+.|.++
T Consensus 373 ~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~ 451 (679)
T 4e6h_A 373 C-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLA 451 (679)
T ss_dssp H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred h-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHH
Confidence 4 444555566677777888999999999999875210 0 131 346788888888899999
Q ss_pred HHHHHHHhC-CC--CCCHHHHHHHHHHHHHh-CChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHH
Q 036287 271 EAYDFITNM-KI--APDHIMLGSLLSACKIH-GKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMK 346 (488)
Q Consensus 271 ~A~~~~~~m-~~--~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 346 (488)
.|..+|.+. .. .+...+|...+..-... ++.+.|.++|+.+++..|.++..+...+......|+.+.|..+|+...
T Consensus 452 ~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal 531 (679)
T 4e6h_A 452 ASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSI 531 (679)
T ss_dssp HHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999887 22 12233443322222233 458999999999999888888888888888888999999999999887
Q ss_pred hCCC
Q 036287 347 EAGV 350 (488)
Q Consensus 347 ~~g~ 350 (488)
....
T Consensus 532 ~~~~ 535 (679)
T 4e6h_A 532 DKIS 535 (679)
T ss_dssp TTSS
T ss_pred HhcC
Confidence 6543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2.1e-10 Score=105.04 Aligned_cols=152 Identities=10% Similarity=0.037 Sum_probs=80.4
Q ss_pred HcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHc------CC-CCcHhHHHHHH
Q 036287 93 RNGEMARALDLFREMQR-------DNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKH------RI-DLNHIVGGALI 158 (488)
Q Consensus 93 ~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~li 158 (488)
..|++++|+.+|++..+ ...+....++..+...+...|++++|...+..+++. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34556666655555543 111223455666666777777777777777766543 11 22344556666
Q ss_pred HHHHhcCCHHHHHHHHHhccc-------C----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCCC-HHHH
Q 036287 159 NMYSRCGDIDKALQVFEEMKE-------R----DVTTYNSLIAGLAMHGRSIEAVEMFREMINQ------GIRPT-KVTF 220 (488)
Q Consensus 159 ~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~ 220 (488)
..|...|++++|...|++..+ + ...++..+...|...|++++|+..|++..+. +..|+ ..++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 666666666666666655432 1 1234555555566666666666666655542 10111 2334
Q ss_pred HHHHHHHhccCCHHHHHHHHHhcc
Q 036287 221 VGVLNACSHGGLVDLGFEIFQSMT 244 (488)
Q Consensus 221 ~~ll~a~~~~g~~~~a~~~~~~~~ 244 (488)
..+..++...|++++|..+++.+.
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444555555555555554444
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-09 Score=101.62 Aligned_cols=169 Identities=14% Similarity=-0.006 Sum_probs=85.9
Q ss_pred CHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCchHHHHHHH
Q 036287 65 LVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRD----NVRPN-EVTIVCVLSACSQLGALELGRWIH 139 (488)
Q Consensus 65 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~ 139 (488)
++++|...|++. ...|...|++++|+..|.+.... |-+++ ..+|..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 366666665543 66677777777777777766542 21111 345666666666777777777666
Q ss_pred HHHHHcCC---CC--cHhHHHHHHHHHHhc-CCHHHHHHHHHhcccC-----C----HHHHHHHHHHHHhcCChhHHHHH
Q 036287 140 SYMGKHRI---DL--NHIVGGALINMYSRC-GDIDKALQVFEEMKER-----D----VTTYNSLIAGLAMHGRSIEAVEM 204 (488)
Q Consensus 140 ~~~~~~g~---~~--~~~~~~~li~~y~~~-g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~l 204 (488)
...++... .+ ...+++.+..+|... |++++|...|++..+- + ..+++.+...|.+.|++++|+..
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 66654310 00 023444555555553 5555555555544320 1 12344455555555555555555
Q ss_pred HHHHHHcCCCCCH------HHHHHHHHHHhccCCHHHHHHHHHhcc
Q 036287 205 FREMINQGIRPTK------VTFVGVLNACSHGGLVDLGFEIFQSMT 244 (488)
Q Consensus 205 ~~~m~~~g~~p~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~ 244 (488)
|++..+....... ..+..+..++...|++++|...|+...
T Consensus 181 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555543211111 023334444444455555555555444
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-09 Score=99.80 Aligned_cols=143 Identities=12% Similarity=0.080 Sum_probs=106.6
Q ss_pred HHHHHHhhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCchHHHH
Q 036287 68 NAFEVFSRVKVK----DTVCWTAMIDGLVRNGEMARALDLFREMQRD------NVRP-NEVTIVCVLSACSQLGALELGR 136 (488)
Q Consensus 68 ~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~~~~~~a~ 136 (488)
+|++++++...+ ...+|..+...|...|++++|+..|++..+. +-.| ...++..+...+...|++++|.
T Consensus 26 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 105 (283)
T 3edt_B 26 QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105 (283)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHH
Confidence 444445444322 3457888888888889999888888887653 2122 3457777888888889999998
Q ss_pred HHHHHHHHc------C-CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccC--------C---HHHHHHHHHHHHhcCCh
Q 036287 137 WIHSYMGKH------R-IDLNHIVGGALINMYSRCGDIDKALQVFEEMKER--------D---VTTYNSLIAGLAMHGRS 198 (488)
Q Consensus 137 ~~~~~~~~~------g-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--------~---~~~~~~li~~~~~~g~~ 198 (488)
..+..+.+. . .+....++..+...|...|++++|...|++..+. + ..++..+...|...|++
T Consensus 106 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 185 (283)
T 3edt_B 106 PLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY 185 (283)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 888887764 1 1234667788889999999999999988876532 2 35788888999999999
Q ss_pred hHHHHHHHHHHH
Q 036287 199 IEAVEMFREMIN 210 (488)
Q Consensus 199 ~~A~~l~~~m~~ 210 (488)
++|+..|++..+
T Consensus 186 ~~A~~~~~~~l~ 197 (283)
T 3edt_B 186 QDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998876
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1e-07 Score=97.87 Aligned_cols=343 Identities=10% Similarity=-0.028 Sum_probs=222.0
Q ss_pred HhHHHHHHHHhCCCCchhhHHHHHHHHHhcCC---hHHHHHHHhhCCC-C---CceeeHHHHHHHHHHcCCH--------
Q 036287 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGE---FKDAMQLFDEMPE-C---NDVVASTVMINCYVEHGLV-------- 66 (488)
Q Consensus 2 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~---~~~A~~~~~~m~~-~---~~~~~~~~li~~~~~~g~~-------- 66 (488)
++.+++.++.. ++.+...|...+..-.+.|. ++.+..+|++... . +++..|...+.-..+.++.
T Consensus 85 aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r 163 (679)
T 4e6h_A 85 VYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEAR 163 (679)
T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHH
T ss_pred HHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhH
Confidence 45677777665 45666677777777777777 8888888877544 2 4466777766655554443
Q ss_pred HHHHHHHhhcC------CC-CHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHCCCCCC--HHHHH---HHHHH
Q 036287 67 ENAFEVFSRVK------VK-DTVCWTAMIDGLV---------RNGEMARALDLFREMQRDNVRPN--EVTIV---CVLSA 125 (488)
Q Consensus 67 ~~A~~~f~~~~------~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~g~~p~--~~t~~---~ll~~ 125 (488)
+...++|+... .+ +...|...+.-.. .+++.+.+..+|++.+.. |.. ..+|. ..-..
T Consensus 164 ~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i--P~~~~~~~w~~Y~~fe~~ 241 (679)
T 4e6h_A 164 NIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ--PMDCLESMWQRYTQWEQD 241 (679)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS--CCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHh
Confidence 23346666521 22 3456766665432 233456667777776642 211 11211 10000
Q ss_pred -----------------------H----------------------------------------------Hhc-C-----
Q 036287 126 -----------------------C----------------------------------------------SQL-G----- 130 (488)
Q Consensus 126 -----------------------~----------------------------------------------~~~-~----- 130 (488)
+ .+. +
T Consensus 242 ~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~ 321 (679)
T 4e6h_A 242 VNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSD 321 (679)
T ss_dssp HCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCH
T ss_pred cCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccc
Confidence 0 000 0
Q ss_pred --chHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH-HHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHH
Q 036287 131 --ALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKAL-QVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEM 204 (488)
Q Consensus 131 --~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 204 (488)
..+.+..+|++++..- +.+..+|-..+..+...|+.++|. ++|++... .+...|-..+...-+.|++++|.++
T Consensus 322 ~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~i 400 (679)
T 4e6h_A 322 DLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETT 400 (679)
T ss_dssp HHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 0112233444444332 334555556666667788888886 99988764 4566788888889999999999999
Q ss_pred HHHHHHcC---------CCCC------------HHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHH
Q 036287 205 FREMINQG---------IRPT------------KVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLL 263 (488)
Q Consensus 205 ~~~m~~~g---------~~p~------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 263 (488)
|+++.+.. -.|+ ...|...+....+.|..+.|..+|..+.+. .-.+....|...+.+-
T Consensus 401 yek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE 479 (679)
T 4e6h_A 401 ILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIE 479 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHH
Confidence 99998641 0132 235667777777889999999999999853 1122344554444444
Q ss_pred HhcC-ChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC---CchhHHHHHHHHhcCCChHH
Q 036287 264 SRVG-RPEEAYDFITNM--KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSA---DSGTYVLLSNAYASSGKWKE 337 (488)
Q Consensus 264 ~~~g-~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~ 337 (488)
.+.+ +.+.|.++|+.. ...-+...|...+......|+.+.|..+|+++++..|+ ....|...+..-...|+.+.
T Consensus 480 ~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~ 559 (679)
T 4e6h_A 480 YHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNS 559 (679)
T ss_dssp HTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHH
T ss_pred HHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4554 589999999887 33335777888888888899999999999999998763 34577788888889999999
Q ss_pred HHHHHHHHHhCC
Q 036287 338 AVQIRAKMKEAG 349 (488)
Q Consensus 338 a~~~~~~m~~~g 349 (488)
+.++.+++.+.-
T Consensus 560 ~~~v~~R~~~~~ 571 (679)
T 4e6h_A 560 VRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHhC
Confidence 999999998764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.10 E-value=1.7e-08 Score=92.46 Aligned_cols=173 Identities=12% Similarity=0.063 Sum_probs=95.6
Q ss_pred HHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHhccc
Q 036287 170 ALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRP-TKVTFVGVLNACSHGGLVDLGFEIFQSMTR 245 (488)
Q Consensus 170 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 245 (488)
|.+.|++... ++..++..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+++.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4555554432 344444555566666666666666666655443212 333444555666666666666666666653
Q ss_pred ccCccc-----ChhhHHHHHHHHH--h--cCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhc-
Q 036287 246 DYGIEP-----QIEHYGCIVDLLS--R--VGRPEEAYDFITNM-KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDC- 314 (488)
Q Consensus 246 ~~~~~p-----~~~~~~~li~~~~--~--~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 314 (488)
..| +..+...|+.++. . .++..+|..+|+++ ...|+..+-..++.++...|++++|+..++.+.+.
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 244 2333344443322 2 23666777777666 33344223333444666667777777777765554
Q ss_pred ---------CCCCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 315 ---------RSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 315 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
+|.++.++..++..+...|+ +|.+++.++++
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 36666666666655556665 66666666665
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.1e-08 Score=94.82 Aligned_cols=212 Identities=10% Similarity=-0.029 Sum_probs=150.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHc----CCCCc-HhHHHHHHHHHHhcCCHHHH
Q 036287 96 EMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKH----RIDLN-HIVGGALINMYSRCGDIDKA 170 (488)
Q Consensus 96 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~~-~~~~~~li~~y~~~g~~~~A 170 (488)
++++|...|.+. ...+...|++++|...+....+. |-+++ ..+++.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 488888888876 34567789999999888887654 32222 56788899999999999999
Q ss_pred HHHHHhccc-----CC----HHHHHHHHHHHHhc-CChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCCHHH
Q 036287 171 LQVFEEMKE-----RD----VTTYNSLIAGLAMH-GRSIEAVEMFREMINQGIR-PT----KVTFVGVLNACSHGGLVDL 235 (488)
Q Consensus 171 ~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~ 235 (488)
...|++..+ .+ ..+|+.+...|... |++++|+..|++..+.... .+ ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 998887664 12 35788888889986 9999999999988763111 01 3467788888999999999
Q ss_pred HHHHHHhcccccCcccCh-----hhHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--HhCCh
Q 036287 236 GFEIFQSMTRDYGIEPQI-----EHYGCIVDLLSRVGRPEEAYDFITNM-KIAPDHI------MLGSLLSACK--IHGKL 301 (488)
Q Consensus 236 a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~------~~~~ll~~~~--~~g~~ 301 (488)
|...|+...+...-.+.. ..|..+..++...|++++|...+++. .+.|+.. .+..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 999999887531111111 15677888899999999999999887 5555422 2444555554 34567
Q ss_pred hHHHHHHHHHHhcCCCCchhH
Q 036287 302 QLGEQIAKRLLDCRSADSGTY 322 (488)
Q Consensus 302 ~~a~~~~~~~~~~~p~~~~~~ 322 (488)
++|...++++..++|.....+
T Consensus 257 ~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 257 SEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp HHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHhccCCccHHHHHHHH
Confidence 888888877777777554333
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-08 Score=93.29 Aligned_cols=78 Identities=10% Similarity=0.067 Sum_probs=36.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCC-CCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 036287 100 ALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRI-DLNHIVGGALINMYSRCGDIDKALQVFEEMK 178 (488)
Q Consensus 100 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 178 (488)
|+..|++....+ +++..++..+..++...|++++|.+++...+..+. .-+...+..++.+|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444555444433 33444444444555555555555555555444332 1233444444455555555555555554443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.05 E-value=8.3e-09 Score=93.76 Aligned_cols=205 Identities=10% Similarity=0.017 Sum_probs=141.7
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhccc--C-C---HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC-HHHH
Q 036287 149 LNHIVGGALINMYSRCGDIDKALQVFEEMKE--R-D---VTTYNSLIAGLAMHGRSIEAVEMFREMINQGI-RPT-KVTF 220 (488)
Q Consensus 149 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~ 220 (488)
.+...+..+...+.+.|++++|...|+++.+ | + ...+..+..+|.+.|++++|+..|++..+... .|+ ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3456666777888888888888888888765 2 3 56777788888888888888888888887522 112 3345
Q ss_pred HHHHHHHhc--------cCCHHHHHHHHHhcccccCcccCh-hhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 036287 221 VGVLNACSH--------GGLVDLGFEIFQSMTRDYGIEPQI-EHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSL 291 (488)
Q Consensus 221 ~~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 291 (488)
..+..++.. .|++++|...|+.+.+. .|+. .....+.......+.+ ...+..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~l 154 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHH
Confidence 556666666 78888888888887753 3432 2222221111110000 1225667
Q ss_pred HHHHHHhCChhHHHHHHHHHHhcCCCC---chhHHHHHHHHhcC----------CChHHHHHHHHHHHhCCCccCCceeE
Q 036287 292 LSACKIHGKLQLGEQIAKRLLDCRSAD---SGTYVLLSNAYASS----------GKWKEAVQIRAKMKEAGVQKEPGCSS 358 (488)
Q Consensus 292 l~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~~~~~~s~ 358 (488)
...+...|+++.|...++++++..|.+ +.++..++.+|... |++++|...++++.+..
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--------- 225 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--------- 225 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC---------
Confidence 788999999999999999999998874 34788888999876 89999999999987642
Q ss_pred EEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHH
Q 036287 359 IEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVKL 394 (488)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~ 394 (488)
..++...++...+.++...+.+
T Consensus 226 --------------p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 226 --------------PDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------TTCTHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCChHHHHHHHHHHHHHHHHHH
Confidence 1345666677766666666553
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.6e-08 Score=80.88 Aligned_cols=126 Identities=15% Similarity=0.198 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYS 162 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 162 (488)
+|..+...+...|++++|+.+|+++.+.+ +.+...+..+...+...|++++|..++..+.+.+ +.+..++..+...|.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 46666777777777777777777776643 3355666666666777777777777777766654 334556666677777
Q ss_pred hcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036287 163 RCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMIN 210 (488)
Q Consensus 163 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 210 (488)
..|++++|.+.|+++.+ .+...|..+...+...|++++|...|+++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 77777777777766543 3455666677777777777777777777665
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.3e-08 Score=92.30 Aligned_cols=176 Identities=7% Similarity=-0.000 Sum_probs=140.7
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccc
Q 036287 167 IDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRD 246 (488)
Q Consensus 167 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 246 (488)
.+.....+......+...+..+...+.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...++.+..
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~- 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL- 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG-
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch-
Confidence 4445555555555566677788888999999999999999998852 33556777888899999999999999999874
Q ss_pred cCcccChhhHHHH-HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC--chh
Q 036287 247 YGIEPQIEHYGCI-VDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD--SGT 321 (488)
Q Consensus 247 ~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~ 321 (488)
..|+....... ...+.+.++.++|...+++. ...| +...+..+...+...|++++|...++++++.+|.+ ..+
T Consensus 180 --~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 180 --QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp --GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred --hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 35664433332 33466778888888888877 4445 58889999999999999999999999999999987 789
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHH
Q 036287 322 YVLLSNAYASSGKWKEAVQIRAKMK 346 (488)
Q Consensus 322 ~~~l~~~~~~~g~~~~a~~~~~~m~ 346 (488)
+..|+.+|...|+.++|...+++..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999999998887654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.00 E-value=9.9e-09 Score=93.26 Aligned_cols=186 Identities=11% Similarity=-0.007 Sum_probs=138.5
Q ss_pred CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCc---HhHHHHHHHHHHhcCCHHHHHHHHHhccc--C---C-HH
Q 036287 113 RPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLN---HIVGGALINMYSRCGDIDKALQVFEEMKE--R---D-VT 183 (488)
Q Consensus 113 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~---~-~~ 183 (488)
+.+...+......+.+.|++++|...+..+++.. +.+ ..++..+..+|.+.|++++|...|++..+ | . ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3456778888889999999999999999999875 223 66788899999999999999999999875 2 2 35
Q ss_pred HHHHHHHHHHh--------cCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHhcccccCcccChh
Q 036287 184 TYNSLIAGLAM--------HGRSIEAVEMFREMINQGIRPTKV-TFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIE 254 (488)
Q Consensus 184 ~~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 254 (488)
++..+..++.. .|++++|+..|++..+. .|+.. ....+ ..+..+... -..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~ 149 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LAR 149 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHH
Confidence 67788888888 99999999999999985 34432 22111 111111100 012
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHh----------CChhHHHHHHHHHHhcCCCCc
Q 036287 255 HYGCIVDLLSRVGRPEEAYDFITNM-KIAPD----HIMLGSLLSACKIH----------GKLQLGEQIAKRLLDCRSADS 319 (488)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~ 319 (488)
.+..+...|.+.|++++|+..|+++ ...|+ ...+..+..++... |++++|...++++++..|+++
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 3556778888999999999988887 33333 45677777777765 888999999999999999886
Q ss_pred h
Q 036287 320 G 320 (488)
Q Consensus 320 ~ 320 (488)
.
T Consensus 230 ~ 230 (261)
T 3qky_A 230 L 230 (261)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.97 E-value=4.4e-08 Score=86.83 Aligned_cols=180 Identities=13% Similarity=0.008 Sum_probs=121.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccc--CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH----HH
Q 036287 151 HIVGGALINMYSRCGDIDKALQVFEEMKE--RD----VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKV----TF 220 (488)
Q Consensus 151 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~ 220 (488)
...+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|++..+.. |+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHH
Confidence 44555677788889999999999998774 32 2467788888999999999999999988753 3321 33
Q ss_pred HHHHHHHhc------------------cCCHHHHHHHHHhcccccCcccCh-hhHHHHHHHHHhcCChHHHHHHHHhCCC
Q 036287 221 VGVLNACSH------------------GGLVDLGFEIFQSMTRDYGIEPQI-EHYGCIVDLLSRVGRPEEAYDFITNMKI 281 (488)
Q Consensus 221 ~~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 281 (488)
..+..++.. .|+.++|...|+.+.+. .|+. ..+.++.... .+....
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----~~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLV----FLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----HHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHH----HHHHHH--------
Confidence 333444432 35566666666666542 2321 1111111000 000000
Q ss_pred CCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCc---hhHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 036287 282 APDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADS---GTYVLLSNAYASSGKWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 282 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 350 (488)
......+...+...|+++.|...++++++..|.++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 01113456678899999999999999999998875 5688999999999999999999999887654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=5.9e-10 Score=92.16 Aligned_cols=110 Identities=8% Similarity=0.029 Sum_probs=73.2
Q ss_pred HHHHHHhccCCHHHHHHHHHhcccccCccc-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh
Q 036287 222 GVLNACSHGGLVDLGFEIFQSMTRDYGIEP-QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIH 298 (488)
Q Consensus 222 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 298 (488)
.+...|...|++++|.+.|++..+ +.| +...|..+..+|.+.|++++|+..|++. .+.| +...|..+...+...
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 112 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKN 112 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 344444555555555555555442 223 2455666666666677777777666665 4445 467788888888888
Q ss_pred CChhHHHHH-HHHHHhcCCCCchhHHHHHHHHhcCCC
Q 036287 299 GKLQLGEQI-AKRLLDCRSADSGTYVLLSNAYASSGK 334 (488)
Q Consensus 299 g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 334 (488)
|+.++|.+. ++++++++|.++.+|......+...|+
T Consensus 113 ~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 113 DVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred CChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888766554 588999999998888888888877775
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-08 Score=81.74 Aligned_cols=130 Identities=18% Similarity=0.190 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHH
Q 036287 184 TYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLL 263 (488)
Q Consensus 184 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 263 (488)
+|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++.+.+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------- 64 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----------------- 64 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----------------
Confidence 45556666666666666666666665532 223334444444444455555555555444321
Q ss_pred HhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHH
Q 036287 264 SRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRA 343 (488)
Q Consensus 264 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 343 (488)
.+.+...|..+...+...|++++|...++++.+..|.+..++..++.+|...|++++|.+.++
T Consensus 65 -----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 65 -----------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp -----------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -----------------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 112345566666666667777777777777777777776777777777777777777777777
Q ss_pred HHHhC
Q 036287 344 KMKEA 348 (488)
Q Consensus 344 ~m~~~ 348 (488)
++.+.
T Consensus 128 ~~~~~ 132 (136)
T 2fo7_A 128 KALEL 132 (136)
T ss_dssp HHHHH
T ss_pred HHHcc
Confidence 76553
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.3e-09 Score=110.36 Aligned_cols=168 Identities=10% Similarity=-0.031 Sum_probs=134.3
Q ss_pred HhcCCHHHHHHHHHhcc-----------cCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 036287 162 SRCGDIDKALQVFEEMK-----------ERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHG 230 (488)
Q Consensus 162 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 230 (488)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|+..|++..+.. +.+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67888999998888876 2456788888888899999999999999888752 33556777788888889
Q ss_pred CCHHHHHHHHHhcccccCccc-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHH
Q 036287 231 GLVDLGFEIFQSMTRDYGIEP-QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQI 307 (488)
Q Consensus 231 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 307 (488)
|++++|...|+++.+ +.| +...+..+..+|.+.|++++ ++.|++. ...| +...|..+..++...|++++|...
T Consensus 481 g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999988874 345 46778888888999999998 8888877 4445 477888888899999999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHhcCCC
Q 036287 308 AKRLLDCRSADSGTYVLLSNAYASSGK 334 (488)
Q Consensus 308 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 334 (488)
++++++++|.+..++..++.+|...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999888888888888877665
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.91 E-value=6.7e-08 Score=100.49 Aligned_cols=166 Identities=13% Similarity=0.047 Sum_probs=97.8
Q ss_pred HHcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 036287 92 VRNGEMARALDLFREMQ--------RDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSR 163 (488)
Q Consensus 92 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 163 (488)
...|++++|++.|++.. +.. +.+...+..+..++...|++++|...++.+++.. +.+...+..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 56677777777777776 321 3345566666666667777777777776666654 3355566666666666
Q ss_pred cCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 036287 164 CGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIF 240 (488)
Q Consensus 164 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 240 (488)
.|++++|.+.|++..+ .+...|..+...|.+.|++++ ++.|++..+.+ +.+...+..+..++...|++++|.+.|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666666543 244566666666666666666 66666666532 223345555555566666666666666
Q ss_pred HhcccccCcccC-hhhHHHHHHHHH
Q 036287 241 QSMTRDYGIEPQ-IEHYGCIVDLLS 264 (488)
Q Consensus 241 ~~~~~~~~~~p~-~~~~~~li~~~~ 264 (488)
+++.+ +.|+ ...+..+..+|.
T Consensus 558 ~~al~---l~P~~~~a~~~~~~~~~ 579 (681)
T 2pzi_A 558 DEVPP---TSRHFTTARLTSAVTLL 579 (681)
T ss_dssp HTSCT---TSTTHHHHHHHHHHHTC
T ss_pred Hhhcc---cCcccHHHHHHHHHHHH
Confidence 65552 2343 334444444443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.7e-08 Score=85.49 Aligned_cols=185 Identities=11% Similarity=0.051 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEV-TIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMY 161 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 161 (488)
.+-.....+...|++++|+..|++..+. .|+.. .+.. . ... ............+..+|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-~----~~~--------------~~~~~~~~~~~~lg~~~ 64 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-T----NVD--------------KNSEISSKLATELALAY 64 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-H----HSC--------------TTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-h----hhc--------------chhhhhHHHHHHHHHHH
Confidence 3344455666777777777777777664 23322 2211 0 000 00011122233466666
Q ss_pred HhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC--HHHH
Q 036287 162 SRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGL--VDLG 236 (488)
Q Consensus 162 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a 236 (488)
.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+.. +.+..++..+..++...|. .+.+
T Consensus 65 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~ 143 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKL 143 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 667777777777666543 355666666777777777777777777766632 2234455555555544332 3334
Q ss_pred HHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 036287 237 FEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPDHIMLGSLL 292 (488)
Q Consensus 237 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll 292 (488)
...+.... ...|....+..+..++...|++++|...|++. ...|+......+.
T Consensus 144 ~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~ 197 (208)
T 3urz_A 144 ETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD 197 (208)
T ss_dssp HHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred HHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 44444443 11222223333444555567777777777665 5666655444433
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.6e-08 Score=92.99 Aligned_cols=219 Identities=11% Similarity=0.044 Sum_probs=146.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 036287 94 NGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQV 173 (488)
Q Consensus 94 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 173 (488)
.|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 456777777777665531 111 0 01135666666665543 4456677787777777
Q ss_pred HHhccc-----CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHhccCCHHHHHHH
Q 036287 174 FEEMKE-----RD----VTTYNSLIAGLAMHGRSIEAVEMFREMINQG---IRPT--KVTFVGVLNACSHGGLVDLGFEI 239 (488)
Q Consensus 174 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~~ 239 (488)
|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 776543 11 3467788888888999999999988876531 1121 3466777788888 999999999
Q ss_pred HHhcccccCcc---c-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHHhCChhHHHHH
Q 036287 240 FQSMTRDYGIE---P-QIEHYGCIVDLLSRVGRPEEAYDFITNM-KI---APD----HIMLGSLLSACKIHGKLQLGEQI 307 (488)
Q Consensus 240 ~~~~~~~~~~~---p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~ 307 (488)
|++..+-..-. + ...++..+...|.+.|++++|++.+++. .+ .++ ...+..+...+...|+++.|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 98877421111 1 1467888899999999999999999876 11 112 23566677777888999999999
Q ss_pred HHHHHhcCCCCchh-----HHHHHHHHhcCCChHHHHH
Q 036287 308 AKRLLDCRSADSGT-----YVLLSNAYASSGKWKEAVQ 340 (488)
Q Consensus 308 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 340 (488)
+++.+ ..|....+ ...++.+| ..|+.+.+.+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 88765432 33455555 5677666555
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.90 E-value=5.3e-08 Score=85.14 Aligned_cols=130 Identities=11% Similarity=-0.004 Sum_probs=89.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 036287 87 MIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGD 166 (488)
Q Consensus 87 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 166 (488)
+...|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...++.+++.. +.+..++..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 7788888888888888888887754 3456777788888888888888888888888765 4456777777777765543
Q ss_pred --HHHHHHHHHhcccCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 036287 167 --IDKALQVFEEMKERDVT--TYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTF 220 (488)
Q Consensus 167 --~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 220 (488)
...+...++....++.. .|..+..++...|++++|+..|++..+ ..|+....
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~ 193 (208)
T 3urz_A 138 QEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQ 193 (208)
T ss_dssp HHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHH
Confidence 44556666666665543 334445556667788888888888776 45665433
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.6e-07 Score=82.37 Aligned_cols=161 Identities=8% Similarity=-0.095 Sum_probs=92.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----CHHHHHHHHHhcccccCcccChhhH
Q 036287 181 DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGG----LVDLGFEIFQSMTRDYGIEPQIEHY 256 (488)
Q Consensus 181 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~~ 256 (488)
++.++..+...|...+++++|+..|++..+.| +...+..+...|.. + +.++|..+|....+. -+...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 44444444444444555555555555554432 23333444444444 3 455555555555421 233444
Q ss_pred HHHHHHHHh----cCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH----hCChhHHHHHHHHHHhcCCCCchhHHH
Q 036287 257 GCIVDLLSR----VGRPEEAYDFITNM-KIAPD---HIMLGSLLSACKI----HGKLQLGEQIAKRLLDCRSADSGTYVL 324 (488)
Q Consensus 257 ~~li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~ 324 (488)
..|..+|.. .+++++|.++|++. ...|+ +..+..|...|.. .++.++|...+++..+. |.++.++..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 455555544 55666666666665 33332 5666666666666 66788888888888777 445567777
Q ss_pred HHHHHhcC-C-----ChHHHHHHHHHHHhCCC
Q 036287 325 LSNAYASS-G-----KWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 325 l~~~~~~~-g-----~~~~a~~~~~~m~~~g~ 350 (488)
|..+|... | ++++|.+.+++..+.|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 87777654 3 78888888887776654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.88 E-value=6.4e-08 Score=82.08 Aligned_cols=154 Identities=12% Similarity=0.079 Sum_probs=82.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHh
Q 036287 53 STVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSA-CSQ 128 (488)
Q Consensus 53 ~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~ 128 (488)
+..+...+.+.|++++|...|++.. +.+...|..+...+.+.|++++|+..|++..... |+.......... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 3444455555555555555555544 2245556666666666666666666666654432 233222211111 111
Q ss_pred cCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCC-----HHHHHHHHHHHHhcCChhHHHH
Q 036287 129 LGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERD-----VTTYNSLIAGLAMHGRSIEAVE 203 (488)
Q Consensus 129 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~ 203 (488)
.+....+...++..++.. +.+...+..+...|...|++++|...|+++.+.+ ...+..+...+...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 111223455555555543 3345566666666666777777776666655421 3466666667777777777777
Q ss_pred HHHHHH
Q 036287 204 MFREMI 209 (488)
Q Consensus 204 l~~~m~ 209 (488)
.|++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.1e-08 Score=83.29 Aligned_cols=77 Identities=6% Similarity=0.014 Sum_probs=58.6
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC--chhHHHHHHHHhcCCChHHHHHHHHHHH
Q 036287 271 EAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD--SGTYVLLSNAYASSGKWKEAVQIRAKMK 346 (488)
Q Consensus 271 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 346 (488)
+|...+++. ...| +...+..+...+...|++++|...++++++.+|.. +..+..++.+|...|+.++|...+++..
T Consensus 92 ~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 92 PELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 345555554 3344 47778888888888889999999998888888754 5588888888888899888888887664
Q ss_pred h
Q 036287 347 E 347 (488)
Q Consensus 347 ~ 347 (488)
.
T Consensus 172 ~ 172 (176)
T 2r5s_A 172 Y 172 (176)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.84 E-value=4.3e-08 Score=86.02 Aligned_cols=124 Identities=12% Similarity=0.080 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----chHHHHHHHHHHHHcCCCCcHhHHH
Q 036287 80 DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLG----ALELGRWIHSYMGKHRIDLNHIVGG 155 (488)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~~ 155 (488)
+..++..|...|...+++++|+..|++..+.| +...+..+...+.. + +.++|..+++...+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 34444444444444555555555555544433 33334444444443 3 4555555555544433 333444
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhcccCC-----HHHHHHHHHHHHh----cCChhHHHHHHHHHHH
Q 036287 156 ALINMYSR----CGDIDKALQVFEEMKERD-----VTTYNSLIAGLAM----HGRSIEAVEMFREMIN 210 (488)
Q Consensus 156 ~li~~y~~----~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~A~~l~~~m~~ 210 (488)
.|..+|.. .+++++|...|++..+.+ +.++..|...|.. .+++++|+..|++..+
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 44444444 445555555555544321 3444455555544 4455555555555544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.9e-07 Score=86.16 Aligned_cols=162 Identities=9% Similarity=-0.007 Sum_probs=96.5
Q ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCHHHHHH-HHH
Q 036287 114 PNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE--RDVTTYNS-LIA 190 (488)
Q Consensus 114 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~ 190 (488)
.+...+..+...+...|++++|...++.+.+.. +.+...+..|..+|.+.|++++|...|+++.. |+...... ...
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 344555566666667777777777777776654 34556666777777777777777777777654 43332222 222
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChH
Q 036287 191 GLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPE 270 (488)
Q Consensus 191 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 270 (488)
.+.+.++.++|+..|++..... +.+...+..+..++...|++++|...|..+.+...-..+...+..++..|...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 3556666677777777766642 334455556666666777777777777666643111112445556666666666666
Q ss_pred HHHHHHH
Q 036287 271 EAYDFIT 277 (488)
Q Consensus 271 ~A~~~~~ 277 (488)
+|...++
T Consensus 273 ~a~~~~r 279 (287)
T 3qou_A 273 ALASXYR 279 (287)
T ss_dssp HHHHHHH
T ss_pred cHHHHHH
Confidence 6555544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.6e-08 Score=83.50 Aligned_cols=138 Identities=7% Similarity=-0.061 Sum_probs=63.8
Q ss_pred HHHHhcCChHHHHHHHhhCCCCC--ceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHH
Q 036287 26 ELYGKCGEFKDAMQLFDEMPECN--DVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEMARA 100 (488)
Q Consensus 26 ~~y~~~g~~~~A~~~~~~m~~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A 100 (488)
.+|...|++++|...+......+ +...+-.+...|.+.|++++|++.|++.. +.+..+|..+...|.+.|++++|
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHH
Confidence 34444555555555555444321 33444455555555555555555555432 22444555555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHH-HHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 036287 101 LDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRW-IHSYMGKHRIDLNHIVGGALINMYSRCG 165 (488)
Q Consensus 101 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~-~~~~~~~~g~~~~~~~~~~li~~y~~~g 165 (488)
+..|++..+.. +-+..++..+...+.+.|+.+++.+ +++.+++.. |.+..++......+...|
T Consensus 85 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 55555555432 2234444455555555555443332 234444432 223344444444443333
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=4.9e-08 Score=99.45 Aligned_cols=159 Identities=11% Similarity=0.045 Sum_probs=124.4
Q ss_pred cCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 036287 164 CGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIF 240 (488)
Q Consensus 164 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 240 (488)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4789999999998775 457889999999999999999999999999852 335677888889999999999999999
Q ss_pred HhcccccCccc-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh---CChhHHHHHHHHHHhc
Q 036287 241 QSMTRDYGIEP-QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIH---GKLQLGEQIAKRLLDC 314 (488)
Q Consensus 241 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 314 (488)
++..+. .| +...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++.
T Consensus 81 ~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 998853 44 4778899999999999999999999987 4444 578889999999999 9999999999999999
Q ss_pred CCCCchhHHHHH
Q 036287 315 RSADSGTYVLLS 326 (488)
Q Consensus 315 ~p~~~~~~~~l~ 326 (488)
+|.+...|..+.
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999888877665
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=9.2e-08 Score=97.43 Aligned_cols=147 Identities=8% Similarity=-0.044 Sum_probs=108.5
Q ss_pred cCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHH
Q 036287 129 LGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMF 205 (488)
Q Consensus 129 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 205 (488)
.|++++|.+.++.+.+.. +.+...+..+...|...|++++|.+.|++..+ .+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478889999999888764 44678888999999999999999999998765 45778999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhc---CChHHHHHHHHhC
Q 036287 206 REMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRV---GRPEEAYDFITNM 279 (488)
Q Consensus 206 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m 279 (488)
++..+.. +.+...+..+..++...|++++|.+.++...+. .+.+...+..+...|... |+.++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9998852 345677888889999999999999999998753 123467888899999999 9999999999887
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.78 E-value=4.3e-08 Score=80.74 Aligned_cols=102 Identities=12% Similarity=-0.001 Sum_probs=91.6
Q ss_pred CcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHH
Q 036287 248 GIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVL 324 (488)
Q Consensus 248 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 324 (488)
.+.|+ ...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...|+++++++|.++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 44554 567888889999999999999999988 4455 58899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 325 LSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 325 l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
++.+|...|++++|.+.|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998743
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.77 E-value=6e-06 Score=76.13 Aligned_cols=228 Identities=8% Similarity=0.014 Sum_probs=146.7
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--chHHHHHHHHHHHHcCCCCcHhHHHHHHHHH----Hhc--
Q 036287 93 RNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLG--ALELGRWIHSYMGKHRIDLNHIVGGALINMY----SRC-- 164 (488)
Q Consensus 93 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y----~~~-- 164 (488)
+....++|++++.+++..+ +-+...|+.--.++...+ +++++.+.+..++... +.+..+|+.--..+ .+.
T Consensus 45 ~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 45 AEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence 3344468888888888753 234555666666777777 8888888888887765 44555565544444 444
Q ss_pred -CCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChh--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC------
Q 036287 165 -GDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSI--EAVEMFREMINQGIRPTKVTFVGVLNACSHGGL------ 232 (488)
Q Consensus 165 -g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~------ 232 (488)
+++++++++++++.+ +|..+|+--.-.+.+.|.++ ++++.++++.+.. +-|...+..-.....+.+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhh
Confidence 778888888888774 57778888888888888887 8899999888864 3345555544444455554
Q ss_pred HHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHHhCChhHHHH
Q 036287 233 VDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEE-AYDFITNM-KI----APDHIMLGSLLSACKIHGKLQLGEQ 306 (488)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~ll~~~~~~g~~~~a~~ 306 (488)
++++++.+..+... -+-|...|+-+-..+.+.|+..+ +..+..+. .. ..+...+..+...+.+.|+.++|.+
T Consensus 202 ~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 66777777666632 23345666666666666666433 44455544 11 2245666666666666777777777
Q ss_pred HHHHHHh-cCCCCchhHHHH
Q 036287 307 IAKRLLD-CRSADSGTYVLL 325 (488)
Q Consensus 307 ~~~~~~~-~~p~~~~~~~~l 325 (488)
+++.+.+ .+|.....|...
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHhccChHHHHHHHHH
Confidence 7777765 566665554433
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.77 E-value=2.3e-07 Score=82.10 Aligned_cols=184 Identities=12% Similarity=-0.012 Sum_probs=132.4
Q ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCC--cHhHHHHHHHHHHhcCCHHHHHHHHHhccc--CC-H---HHHH
Q 036287 115 NEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDL--NHIVGGALINMYSRCGDIDKALQVFEEMKE--RD-V---TTYN 186 (488)
Q Consensus 115 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~ 186 (488)
+...+......+...|++++|...++.+++..... ....+..+..+|.+.|++++|...|+++.+ |+ . .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 45566677788999999999999999999864321 235777889999999999999999999874 32 2 2455
Q ss_pred HHHHHHHh------------------cCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHhccccc
Q 036287 187 SLIAGLAM------------------HGRSIEAVEMFREMINQGIRPTKVT-FVGVLNACSHGGLVDLGFEIFQSMTRDY 247 (488)
Q Consensus 187 ~li~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 247 (488)
.+..++.. .|++++|+..|+++.+. .|+... ...... . ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----l------~~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----L------VFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----H------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----H------HHHHHHH----
Confidence 55555554 57899999999999984 455432 211111 0 0001111
Q ss_pred CcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCc
Q 036287 248 GIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADS 319 (488)
Q Consensus 248 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 319 (488)
......+...|.+.|++++|...|+++ ...|+ ...+..+..++...|+.++|...++.+....|.+.
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 112235677889999999999999987 33343 35688889999999999999999999988888764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.72 E-value=7.6e-07 Score=82.23 Aligned_cols=165 Identities=7% Similarity=-0.032 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHhcccccC--cccC--h
Q 036287 183 TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTK-----VTFVGVLNACSHGGLVDLGFEIFQSMTRDYG--IEPQ--I 253 (488)
Q Consensus 183 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~--~ 253 (488)
..+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...+....+... ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34555677788889999999888887764322111 1233455566778899999998887763211 1111 4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC------C
Q 036287 254 EHYGCIVDLLSRVGRPEEAYDFITNM----KIAPD-----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSA------D 318 (488)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~ 318 (488)
.+|+.+...|...|++++|...+++. ...|+ ..++..+...|...|++++|...++++++..+. .
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 57888899999999999999888775 11222 258888999999999999999999999875321 1
Q ss_pred chhHHHHHHHHhcCCChHHH-HHHHHHHHh
Q 036287 319 SGTYVLLSNAYASSGKWKEA-VQIRAKMKE 347 (488)
Q Consensus 319 ~~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 347 (488)
..+|..++.+|...|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 46788999999999999999 777776643
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.71 E-value=7.1e-07 Score=77.89 Aligned_cols=141 Identities=12% Similarity=-0.103 Sum_probs=77.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchH
Q 036287 54 TVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALE 133 (488)
Q Consensus 54 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 133 (488)
..+...+...|++++|...|++...++..+|..+...|.+.|++++|+..|++..+.. +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3444555566666666666666655566666666666666666666666666665543 334455555555666666666
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036287 134 LGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQ 211 (488)
Q Consensus 134 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 211 (488)
+|...++.+.+......... |...|. .........|..+...|...|++++|...|++..+.
T Consensus 89 ~A~~~~~~al~~~~~~~~~~-------~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLID-------YKILGL---------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEE-------CGGGTB---------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCccHHH-------HHHhcc---------ccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 66666665555321110000 000000 000012356666777777777777777777777763
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.70 E-value=4.8e-07 Score=78.99 Aligned_cols=125 Identities=13% Similarity=-0.010 Sum_probs=101.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 036287 220 FVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKI 297 (488)
Q Consensus 220 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 297 (488)
+..+...+...|++++|...|.... .|+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 3345556667788888888887764 456677888888888888888888888776 3333 57788889999999
Q ss_pred hCChhHHHHHHHHHHhcCCCCc----------------hhHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 298 HGKLQLGEQIAKRLLDCRSADS----------------GTYVLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 298 ~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
.|++++|...++++++..|.+. .++..++.+|...|++++|.+.+++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999888776 889999999999999999999999987653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.69 E-value=4.3e-06 Score=77.10 Aligned_cols=160 Identities=8% Similarity=-0.051 Sum_probs=113.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHhccCCHHHHHHHHHhcccccCcccC----hhhHHH
Q 036287 188 LIAGLAMHGRSIEAVEMFREMINQG-IRPTKV----TFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ----IEHYGC 258 (488)
Q Consensus 188 li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 258 (488)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...+++++|...+..+.+...-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566777888888888888877632 122211 2234556666777888888888877642111222 235788
Q ss_pred HHHHHHhcCChHHHHHHHHhC-----CC---CCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC------CchhHH
Q 036287 259 IVDLLSRVGRPEEAYDFITNM-----KI---APD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSA------DSGTYV 323 (488)
Q Consensus 259 li~~~~~~g~~~~A~~~~~~m-----~~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~ 323 (488)
+...|...|++++|...++++ .. .+. ..++..+...|...|++++|...++++++..+. -..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888888888888887775 11 111 347888899999999999999999999875422 256888
Q ss_pred HHHHHHhcCCC-hHHHHHHHHHHHh
Q 036287 324 LLSNAYASSGK-WKEAVQIRAKMKE 347 (488)
Q Consensus 324 ~l~~~~~~~g~-~~~a~~~~~~m~~ 347 (488)
.++.+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999887753
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.68 E-value=5e-06 Score=76.65 Aligned_cols=212 Identities=11% Similarity=0.064 Sum_probs=166.2
Q ss_pred hHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC--CHHHHHHHHHhccc---CCHHHHHHHHHHH----Hhc---CChh
Q 036287 132 LELGRWIHSYMGKHRIDLNHIVGGALINMYSRCG--DIDKALQVFEEMKE---RDVTTYNSLIAGL----AMH---GRSI 199 (488)
Q Consensus 132 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~~ 199 (488)
.++|.+....++... +.+..+|+.--......| +++++++.++.+.. .+..+|+.-...+ ... ++++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 468888888888876 556778888888888888 99999999999875 4567788766655 555 7899
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH--HHHHHHHhcccccCcccChhhHHHHHHHHHhcCC------hHH
Q 036287 200 EAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVD--LGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGR------PEE 271 (488)
Q Consensus 200 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~~ 271 (488)
+++.+++++.+.. +-|...+..-.-.+.+.|.++ +++++++.+.+. -+-|...|+.-...+.+.|. +++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 9999999999863 446666666666666677777 999999999853 23345666666666666666 888
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChh-HHHHHHHHHHhcC---CCCchhHHHHHHHHhcCCChHHHHHHHHHH
Q 036287 272 AYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQ-LGEQIAKRLLDCR---SADSGTYVLLSNAYASSGKWKEAVQIRAKM 345 (488)
Q Consensus 272 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 345 (488)
+++.++++ ...| |...|+.+...+...|+.. ....+..++.+.+ |.++.++..++.+|.+.|+.++|.++++.+
T Consensus 205 El~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 205 ELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 99988877 4444 6889999888888888744 4666788777766 788889999999999999999999999998
Q ss_pred Hh
Q 036287 346 KE 347 (488)
Q Consensus 346 ~~ 347 (488)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 75
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.68 E-value=4.9e-07 Score=84.19 Aligned_cols=170 Identities=8% Similarity=-0.048 Sum_probs=94.8
Q ss_pred cCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCchHHHHH
Q 036287 63 HGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRD----NVRP-NEVTIVCVLSACSQLGALELGRW 137 (488)
Q Consensus 63 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~ 137 (488)
.+++++|...|++ ....|...|++++|+..|.+.... +-++ -..+|..+...+...|++++|..
T Consensus 29 ~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 97 (307)
T 2ifu_A 29 KPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ 97 (307)
T ss_dssp SCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH
T ss_pred CCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 3566666666554 355677778888888777766542 1111 12356666667777777777777
Q ss_pred HHHHHHHc----CCCC-cHhHHHHHHHHHHhcCCHHHHHHHHHhcccC-----C----HHHHHHHHHHHHhcCChhHHHH
Q 036287 138 IHSYMGKH----RIDL-NHIVGGALINMYSRCGDIDKALQVFEEMKER-----D----VTTYNSLIAGLAMHGRSIEAVE 203 (488)
Q Consensus 138 ~~~~~~~~----g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~ 203 (488)
.+...++. |-.. ...++..+..+|.. |++++|...|++..+- + ..+++.+...|.+.|++++|+.
T Consensus 98 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 98 YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77666543 1111 13455566666666 7777777766665421 1 2456666666666777777777
Q ss_pred HHHHHHHc----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHhcc
Q 036287 204 MFREMINQ----GIRPT-KVTFVGVLNACSHGGLVDLGFEIFQSMT 244 (488)
Q Consensus 204 l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 244 (488)
.|++..+. +..+. ..++..+..++...|++++|...|+...
T Consensus 177 ~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 177 SLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 66666542 11111 1133333444444455555555555544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.1e-07 Score=74.04 Aligned_cols=99 Identities=12% Similarity=0.096 Sum_probs=73.9
Q ss_pred cccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHH
Q 036287 249 IEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLL 325 (488)
Q Consensus 249 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 325 (488)
+.|+ ...+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|.++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3444 355666777777788888888777776 3344 467777777778888888888888888888888887788888
Q ss_pred HHHHhcCCChHHHHHHHHHHHh
Q 036287 326 SNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 326 ~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
+.+|...|++++|.+.|++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888877765
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1.7e-06 Score=79.94 Aligned_cols=122 Identities=11% Similarity=0.095 Sum_probs=54.2
Q ss_pred HHHHHhcCchHHHHHHHHHHHHcCCC-Cc----HhHHHHHHHHHHhcCCHHHHHHHHHhccc------CC----HHHHHH
Q 036287 123 LSACSQLGALELGRWIHSYMGKHRID-LN----HIVGGALINMYSRCGDIDKALQVFEEMKE------RD----VTTYNS 187 (488)
Q Consensus 123 l~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~~y~~~g~~~~A~~~~~~~~~------~~----~~~~~~ 187 (488)
...+...+++++|...+..+.+.... ++ ..+++.+...|...|++++|...|+++.+ .+ ..++..
T Consensus 122 ~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~n 201 (293)
T 3u3w_A 122 AAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYN 201 (293)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred HHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHH
Confidence 33334444455555555544442111 11 12344455555555555555555544431 11 124445
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCC-HHHHHHHHHhcc
Q 036287 188 LIAGLAMHGRSIEAVEMFREMINQ----GIRPT-KVTFVGVLNACSHGGL-VDLGFEIFQSMT 244 (488)
Q Consensus 188 li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~-~~~a~~~~~~~~ 244 (488)
+...|...|++++|+..+++..+. +..+. ..++..+..++...|+ .++|.+.++...
T Consensus 202 lg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 202 HAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 555555555555555555554431 11111 3344455555555552 355555554443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.3e-07 Score=77.63 Aligned_cols=97 Identities=12% Similarity=0.012 Sum_probs=86.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 036287 252 QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAY 329 (488)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 329 (488)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++++|.++.++..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3567777888999999999999999987 4444 6888999999999999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHhC
Q 036287 330 ASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 330 ~~~g~~~~a~~~~~~m~~~ 348 (488)
...|++++|.+.+++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.63 E-value=1e-07 Score=87.59 Aligned_cols=51 Identities=8% Similarity=-0.019 Sum_probs=37.8
Q ss_pred hCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcC-CChHHHHHHHHHHHhC
Q 036287 298 HGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASS-GKWKEAVQIRAKMKEA 348 (488)
Q Consensus 298 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 348 (488)
.|+.++|.+.++++++.+|.+......+...+.+. +.+++|.++|.++.+.
T Consensus 148 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 148 AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 57788888888888888887766666666666665 6678888888877553
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.63 E-value=4.1e-07 Score=78.57 Aligned_cols=149 Identities=12% Similarity=-0.013 Sum_probs=83.9
Q ss_pred HcCCHHHHHH---HHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCchH
Q 036287 62 EHGLVENAFE---VFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQR----DNVRP-NEVTIVCVLSACSQLGALE 133 (488)
Q Consensus 62 ~~g~~~~A~~---~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p-~~~t~~~ll~~~~~~~~~~ 133 (488)
..|++++|.+ ++..-+.....+++.+...|...|++++|+..|++... .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 54443333455677777777777777777777776654 11111 2344555566666677777
Q ss_pred HHHHHHHHHHHc----CCC--CcHhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CCH----HHHHHHHHHHHhcCCh
Q 036287 134 LGRWIHSYMGKH----RID--LNHIVGGALINMYSRCGDIDKALQVFEEMKE-----RDV----TTYNSLIAGLAMHGRS 198 (488)
Q Consensus 134 ~a~~~~~~~~~~----g~~--~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~ 198 (488)
+|...+....+. +-. ....++..+...|...|++++|...|++..+ .+. .++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 776666665443 111 1233455566666666777777666665432 111 2345555666666666
Q ss_pred hHHHHHHHHHHH
Q 036287 199 IEAVEMFREMIN 210 (488)
Q Consensus 199 ~~A~~l~~~m~~ 210 (488)
++|...+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.60 E-value=1.5e-05 Score=79.12 Aligned_cols=120 Identities=11% Similarity=0.021 Sum_probs=59.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcC-ChHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 036287 220 FVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVG-RPEEAYDFITNM--KIAPDHIMLGSLLSACK 296 (488)
Q Consensus 220 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~ 296 (488)
|...+....+.+.++.|..+|..+ +..+ .+...|...+..-.+.+ +.+.|..+|+.. ....++..|...+.-..
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~ 365 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLL 365 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 334444444455566666666665 2111 12233332222222222 466666666654 11112344555555555
Q ss_pred HhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHH
Q 036287 297 IHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMK 346 (488)
Q Consensus 297 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 346 (488)
..|+.+.|..+++++. .....+...+..-...|+.+.+.++++++.
T Consensus 366 ~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 366 RIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6666666666666652 233455555555555677777766666554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.8e-07 Score=72.53 Aligned_cols=107 Identities=7% Similarity=-0.056 Sum_probs=74.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 036287 220 FVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKI 297 (488)
Q Consensus 220 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 297 (488)
+......+.+.|++++|.+.|++..+. -+.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 344455555566666666666555531 1223556666667777777777777777665 3344 47788888999999
Q ss_pred hCChhHHHHHHHHHHhcCCCCchhHHHHHHH
Q 036287 298 HGKLQLGEQIAKRLLDCRSADSGTYVLLSNA 328 (488)
Q Consensus 298 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 328 (488)
.|++++|...++++++++|.+..++..|.++
T Consensus 94 ~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999999999998877766554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.57 E-value=7.2e-07 Score=74.18 Aligned_cols=123 Identities=9% Similarity=-0.021 Sum_probs=81.0
Q ss_pred HHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCC
Q 036287 223 VLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGK 300 (488)
Q Consensus 223 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 300 (488)
+...+...|++++|...|....+. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...+...|+
T Consensus 19 ~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~ 96 (166)
T 1a17_A 19 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 96 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcc
Confidence 334444445555555555444421 1123455556666666666666666666655 2223 46778888888888899
Q ss_pred hhHHHHHHHHHHhcCCCCchhHHHHH--HHHhcCCChHHHHHHHHHHHh
Q 036287 301 LQLGEQIAKRLLDCRSADSGTYVLLS--NAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 301 ~~~a~~~~~~~~~~~p~~~~~~~~l~--~~~~~~g~~~~a~~~~~~m~~ 347 (488)
+++|...++++++..|.+...+..+. ..+...|++++|.+.+.....
T Consensus 97 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 97 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999998888877774444 447788999999998887643
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.57 E-value=2.8e-05 Score=77.22 Aligned_cols=320 Identities=8% Similarity=-0.092 Sum_probs=195.6
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhhCCC-CCceeeHHHHHHHHHHcCC-HHHHHHHHhhcC------CCCHHHHHHHH
Q 036287 17 NRSTRLKLVELYGKCGEFKDAMQLFDEMPE-CNDVVASTVMINCYVEHGL-VENAFEVFSRVK------VKDTVCWTAMI 88 (488)
Q Consensus 17 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-~~~~~~~~~li~~~~~~g~-~~~A~~~f~~~~------~~~~~~~~~li 88 (488)
-..+|...+..|-. |+++.|..+|++... .+++..|...+.-..+.++ .+....+|+... ..+...|...+
T Consensus 14 aR~vyer~l~~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 14 PSAIMEHARRLYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 34455555555543 889999999998766 3458899988888877764 345666676533 33667888888
Q ss_pred HHHH----HcCCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHH-------------hcCchHHHHHHHHHHHHcCCCC
Q 036287 89 DGLV----RNGEMARALDLFREMQRDNVRPN-E-VTIVCVLSACS-------------QLGALELGRWIHSYMGKHRIDL 149 (488)
Q Consensus 89 ~~~~----~~g~~~~A~~~~~~m~~~g~~p~-~-~t~~~ll~~~~-------------~~~~~~~a~~~~~~~~~~g~~~ 149 (488)
.-+. .+++.+.+.++|++.+.. ++. . ..|......-. ..+.+..|+.++..+...--..
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~ 170 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW 170 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence 7654 356788899999999873 332 1 22221111100 1122333444444443311011
Q ss_pred cHhHHHHHHHHHHhcC--C-----HHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 036287 150 NHIVGGALINMYSRCG--D-----IDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVT 219 (488)
Q Consensus 150 ~~~~~~~li~~y~~~g--~-----~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 219 (488)
+...|...++.-...+ - .+.+..+|+++.. .+...|-..+.-+.+.|+.++|..+|++.... |+...
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~ 247 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMF 247 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSH
T ss_pred cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHH
Confidence 3345655555432221 1 3456678887664 45678988888889999999999999999987 54443
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhcccccC--------cccChhhHHHHHHHHHhcCChHHHHHHHHhCCCC-CCHHHHHH
Q 036287 220 FVGVLNACSHGGLVDLGFEIFQSMTRDYG--------IEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIA-PDHIMLGS 290 (488)
Q Consensus 220 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~ 290 (488)
+......+...+.. -..+.+.... .. .......|...+..+.+.+.++.|..+|++...+ .+..+|..
T Consensus 248 l~~~y~~~~e~~~~--~~~l~~~~~~-~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~ 324 (493)
T 2uy1_A 248 LSLYYGLVMDEEAV--YGDLKRKYSM-GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIY 324 (493)
T ss_dssp HHHHHHHHTTCTHH--HHHHHHHTC-----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHhhcchhHH--HHHHHHHHHh-hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHH
Confidence 32211111121211 1112221110 00 0111356777777777888999999999988221 23445543
Q ss_pred HHHHHHH-hCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHH
Q 036287 291 LLSACKI-HGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKM 345 (488)
Q Consensus 291 ll~~~~~-~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 345 (488)
....-.. .++.+.|..+++.+++..|.++..+...++...+.|+.+.|..+|+.+
T Consensus 325 ~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 325 CAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3322222 347999999999999988887777777788888899999999999986
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.57 E-value=9.2e-07 Score=71.85 Aligned_cols=100 Identities=9% Similarity=-0.050 Sum_probs=87.6
Q ss_pred cccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHH
Q 036287 249 IEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLL 325 (488)
Q Consensus 249 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 325 (488)
+.|+ ...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++.+|.++..+..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 3443 556667788899999999999999987 4444 688899999999999999999999999999999999999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHhC
Q 036287 326 SNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 326 ~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
+.+|...|++++|.+.++...+.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999988764
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.56 E-value=2.7e-06 Score=70.60 Aligned_cols=126 Identities=8% Similarity=-0.091 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMY 161 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 161 (488)
..|..+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|...+....+.. +.+..++..+..+|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 456667777777777777777777776643 3356666666667777777777777777766654 33455666666667
Q ss_pred HhcCCHHHHHHHHHhccc---CCHHHHHH--HHHHHHhcCChhHHHHHHHHHH
Q 036287 162 SRCGDIDKALQVFEEMKE---RDVTTYNS--LIAGLAMHGRSIEAVEMFREMI 209 (488)
Q Consensus 162 ~~~g~~~~A~~~~~~~~~---~~~~~~~~--li~~~~~~g~~~~A~~l~~~m~ 209 (488)
...|++++|...|++..+ .+...+.. ++..+...|++++|+..+.+..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 777777777776666543 23334422 2233555666666666666543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.55 E-value=7.7e-07 Score=69.76 Aligned_cols=111 Identities=15% Similarity=0.121 Sum_probs=65.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHH
Q 036287 220 FVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KI-APDHIMLGSLLSACKI 297 (488)
Q Consensus 220 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~ 297 (488)
+..+...+...|++++|.+.+..+.+. .+.+...+..+...|.+.|++++|...++++ .. +.+..+|..+...+..
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 333444444444444444444444421 1122344555555666666666666666555 21 2246667777777778
Q ss_pred hCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcC
Q 036287 298 HGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASS 332 (488)
Q Consensus 298 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 332 (488)
.|+++.|...++++.+..|.++..+..+..++...
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 90 QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 88888888888888888887777777776666543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.51 E-value=4.1e-07 Score=74.81 Aligned_cols=121 Identities=10% Similarity=0.021 Sum_probs=67.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCC
Q 036287 20 TRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGE 96 (488)
Q Consensus 20 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~ 96 (488)
+.+.+.++....+.+.+|..+ .+++...|..+...+.+.|++++|...|++.. +.+...|..+..+|...|+
T Consensus 11 ~~~~l~~~~~~~~~l~~al~l-----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~ 85 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDINAI-----PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQ 85 (151)
T ss_dssp HHHHHHHHHHTSCCTGGGCCS-----CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCHHHHhCC-----CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc
Confidence 344445554444444333222 12234555666666666666666666666543 3355566666666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcC
Q 036287 97 MARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHR 146 (488)
Q Consensus 97 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 146 (488)
+++|+..|++..+.. +.+...+..+..++...|++++|...|+.+++..
T Consensus 86 ~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 86 FQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 666666666666543 2345555666666666666666666666666543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=9.4e-07 Score=69.88 Aligned_cols=114 Identities=11% Similarity=-0.060 Sum_probs=70.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 036287 220 FVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKI 297 (488)
Q Consensus 220 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 297 (488)
+..+...+...|++++|...+....+. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...+..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence 333444444445555555555444421 1123445555556666666666666666554 2223 36677777777888
Q ss_pred hCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCCh
Q 036287 298 HGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKW 335 (488)
Q Consensus 298 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 335 (488)
.|+++.|...++++.+..|.++..+..+..++...|++
T Consensus 93 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88888888888888888888877787887777776654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=9.6e-07 Score=70.23 Aligned_cols=80 Identities=9% Similarity=-0.050 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhc
Q 036287 254 EHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYAS 331 (488)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 331 (488)
..+..+...|...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|.+...+..+..++..
T Consensus 51 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 51 KLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 33444444444444444444444443 1122 355666666677777777777777777777777766666666666655
Q ss_pred CC
Q 036287 332 SG 333 (488)
Q Consensus 332 ~g 333 (488)
.|
T Consensus 131 ~~ 132 (133)
T 2lni_A 131 QY 132 (133)
T ss_dssp HT
T ss_pred hc
Confidence 44
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.49 E-value=5.1e-06 Score=71.52 Aligned_cols=26 Identities=19% Similarity=-0.009 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 036287 184 TYNSLIAGLAMHGRSIEAVEMFREMI 209 (488)
Q Consensus 184 ~~~~li~~~~~~g~~~~A~~l~~~m~ 209 (488)
+++.+...|...|++++|+..+++..
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al 93 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444555555555555554443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.49 E-value=5.5e-06 Score=76.38 Aligned_cols=127 Identities=13% Similarity=0.121 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCchHHHHHHHHHHHHcCCC---Cc--
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEV------TIVCVLSACSQLGALELGRWIHSYMGKHRID---LN-- 150 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~---~~-- 150 (488)
..+...+..+...|++++|++.+.+..+.... +.. .+..+...+...|++++|...+....+.... +.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34556677788888888888888877764321 221 1222333344555566666655555432111 11
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccc-----CC-----HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036287 151 HIVGGALINMYSRCGDIDKALQVFEEMKE-----RD-----VTTYNSLIAGLAMHGRSIEAVEMFREMI 209 (488)
Q Consensus 151 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~ 209 (488)
..+++.+...|...|++++|...|++..+ ++ ..+++.+...|...|++++|+..+++..
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 22444555555555555555555544331 11 1344444445555555555555555443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.49 E-value=8.7e-07 Score=81.35 Aligned_cols=49 Identities=6% Similarity=-0.091 Sum_probs=28.4
Q ss_pred cCChHHHHHHHHhC-CCCCCHHH-HHHHHHHHHHh-CChhHHHHHHHHHHhc
Q 036287 266 VGRPEEAYDFITNM-KIAPDHIM-LGSLLSACKIH-GKLQLGEQIAKRLLDC 314 (488)
Q Consensus 266 ~g~~~~A~~~~~~m-~~~p~~~~-~~~ll~~~~~~-g~~~~a~~~~~~~~~~ 314 (488)
.|+.++|.+.++.. ...|+... ...+...+... +.+++|..+|+++.+.
T Consensus 148 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 148 AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 46677777766665 55555332 33333333333 5577788888777663
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.49 E-value=6.4e-07 Score=84.58 Aligned_cols=160 Identities=10% Similarity=0.026 Sum_probs=115.7
Q ss_pred CCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 036287 165 GDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQ 241 (488)
Q Consensus 165 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 241 (488)
+++++|...|+...+ .+...|..+...|.+.|++++|+..|++..+.. |+...+ ..+.+.++-
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~- 192 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQ- 192 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHH-
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHH-
Confidence 334444444444332 245678888888888888888888888888743 332100 001111100
Q ss_pred hcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCc
Q 036287 242 SMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADS 319 (488)
Q Consensus 242 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 319 (488)
+.....|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...|+++++++|.+.
T Consensus 193 --------~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 264 (336)
T 1p5q_A 193 --------ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK 264 (336)
T ss_dssp --------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred --------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Confidence 011457778888888999999999888887 4444 578899999999999999999999999999999999
Q ss_pred hhHHHHHHHHhcCCChHHH-HHHHHHHH
Q 036287 320 GTYVLLSNAYASSGKWKEA-VQIRAKMK 346 (488)
Q Consensus 320 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 346 (488)
.++..+..++...|++++| ...++.|.
T Consensus 265 ~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 265 AAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 45666664
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=0.00011 Score=68.63 Aligned_cols=180 Identities=11% Similarity=-0.006 Sum_probs=108.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 036287 84 WTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLG-ALELGRWIHSYMGKHRIDLNHIVGGALINMYS 162 (488)
Q Consensus 84 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 162 (488)
++.+-....+.+..++|++++.+++..+ +-+...|+.--.++...+ .++++...+..++... +.+..+|+.-..++.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3333334444555667888888877753 234455666666666666 4777777777777665 445666666655555
Q ss_pred hc-C-CHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChh--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 036287 163 RC-G-DIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSI--------EAVEMFREMINQGIRPTKVTFVGVLNACSH 229 (488)
Q Consensus 163 ~~-g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 229 (488)
+. + ++++++++++++.+ +|..+|+--.-.+.+.|.++ ++++.++++.+.. +-|...++.-...+.+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVS 213 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTT
T ss_pred HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 55 5 67788888877775 35567766655555555555 7788888777753 3355556555555555
Q ss_pred cCC-------HHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCC
Q 036287 230 GGL-------VDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGR 268 (488)
Q Consensus 230 ~g~-------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 268 (488)
.+. ++++++.+..+... -+-|...|+-+-..+.+.|+
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred ccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 554 45666666665531 12234555555555555444
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.48 E-value=5.8e-06 Score=64.57 Aligned_cols=94 Identities=15% Similarity=0.167 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 036287 81 TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINM 160 (488)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 160 (488)
..+|..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|..++..+.+.. +.+..++..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3455555566666666666666666655432 2234444445555555555555555555544432 2233344444444
Q ss_pred HHhcCCHHHHHHHHHh
Q 036287 161 YSRCGDIDKALQVFEE 176 (488)
Q Consensus 161 y~~~g~~~~A~~~~~~ 176 (488)
|...|++++|...|++
T Consensus 87 ~~~~~~~~~A~~~~~~ 102 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQK 102 (125)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHH
Confidence 4444444444444444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.47 E-value=4.8e-06 Score=75.18 Aligned_cols=133 Identities=11% Similarity=-0.073 Sum_probs=72.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC--hhhHHHHHHHHHh
Q 036287 188 LIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ--IEHYGCIVDLLSR 265 (488)
Q Consensus 188 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~ 265 (488)
....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|....+. . .|. ...+..+..++.+
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHHH
Confidence 344455555555555555555442 233333333334555666666666666544321 1 111 2245556666666
Q ss_pred cCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHH
Q 036287 266 VGRPEEAYDFITNM---KIAPD--HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLL 325 (488)
Q Consensus 266 ~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 325 (488)
.|++++|++.|++. +..|. ...+.....++...|+.++|...|+++...+|. ...+..|
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 77777777766665 11132 234555666677777777777777777777776 4444433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.6e-06 Score=66.45 Aligned_cols=99 Identities=15% Similarity=0.057 Sum_probs=84.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC--CchhHHHHHH
Q 036287 252 QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSA--DSGTYVLLSN 327 (488)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 327 (488)
+...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++..|. +...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3556777888888899999999988876 3333 5778888999999999999999999999999999 8899999999
Q ss_pred HHhcC-CChHHHHHHHHHHHhCCC
Q 036287 328 AYASS-GKWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 328 ~~~~~-g~~~~a~~~~~~m~~~g~ 350 (488)
+|... |++++|.+.++...+..-
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999999876543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.47 E-value=4.9e-06 Score=75.13 Aligned_cols=181 Identities=13% Similarity=0.008 Sum_probs=137.2
Q ss_pred hcCCHHHHHHHHHhccc---CCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHHcCCCCCH---------------
Q 036287 163 RCGDIDKALQVFEEMKE---RDVTTYNSL-------IAGLAMHGRSIEAVEMFREMINQGIRPTK--------------- 217 (488)
Q Consensus 163 ~~g~~~~A~~~~~~~~~---~~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~--------------- 217 (488)
..++.+.|.+.|.++.+ .....|+.+ ...+...++..+++..++.-.+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57889999999988775 345788877 4566666666677666665544 33321
Q ss_pred -------HHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCC----HH
Q 036287 218 -------VTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPD----HI 286 (488)
Q Consensus 218 -------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~----~~ 286 (488)
........++...|++++|.++|..+... .|+......+...+.+.+++++|+..|+.....|+ ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 12234556788899999999999999853 35433666677789999999999999998744443 34
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhcC--CC-CchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 287 MLGSLLSACKIHGKLQLGEQIAKRLLDCR--SA-DSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 287 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
.+..+..++...|++++|+..|++..... |. .+.....+..++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 67888899999999999999999998543 43 3457788899999999999999999999774
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.7e-06 Score=68.51 Aligned_cols=96 Identities=13% Similarity=-0.009 Sum_probs=82.0
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 036287 253 IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYA 330 (488)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 330 (488)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++.+|.++.+|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345667777888889999998888876 3344 57888889999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHhC
Q 036287 331 SSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 331 ~~g~~~~a~~~~~~m~~~ 348 (488)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999988764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.44 E-value=4.9e-07 Score=76.47 Aligned_cols=118 Identities=8% Similarity=0.090 Sum_probs=74.3
Q ss_pred ccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHHhCCh--hH
Q 036287 229 HGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSA-CKIHGKL--QL 303 (488)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~-~~~~g~~--~~ 303 (488)
..|++++|...+....+. -+.+...+..+...|...|++++|...+++. ...| +...|..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 345555555555555432 1223455666666666666666666666665 2222 45566666666 6677776 77
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 304 GEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 304 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
|...++++++.+|.++.++..++.+|...|++++|...+++..+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777787777777777777777777888888888888877777654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=6.5e-06 Score=64.88 Aligned_cols=115 Identities=12% Similarity=-0.032 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 036287 81 TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINM 160 (488)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 160 (488)
...|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...+....+.. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3456666666666777777777776666542 3345555566666666666666666666665543 2334455555556
Q ss_pred HHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCC
Q 036287 161 YSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGR 197 (488)
Q Consensus 161 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 197 (488)
|.+.|++++|...|++..+ .+...+..+...+...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 6666666666666555432 234445555555554444
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.43 E-value=4.9e-06 Score=66.01 Aligned_cols=97 Identities=10% Similarity=0.000 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 036287 80 DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALIN 159 (488)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 159 (488)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 34566667777777777777777777766542 2345556666666666666666666666666543 234455555555
Q ss_pred HHHhcCCHHHHHHHHHhcc
Q 036287 160 MYSRCGDIDKALQVFEEMK 178 (488)
Q Consensus 160 ~y~~~g~~~~A~~~~~~~~ 178 (488)
+|.+.|++++|.+.|++..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 6666666666666655543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.39 E-value=3.7e-06 Score=67.36 Aligned_cols=98 Identities=10% Similarity=-0.004 Sum_probs=84.7
Q ss_pred cChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHH
Q 036287 251 PQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNA 328 (488)
Q Consensus 251 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 328 (488)
.+...+..+...+...|++++|...|++. ...| +...|..+...+...|+++.|...++++++.+|.++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 35677788888888899999998888876 3334 478888899999999999999999999999999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHhC
Q 036287 329 YASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 329 ~~~~g~~~~a~~~~~~m~~~ 348 (488)
|...|++++|...+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999988764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.38 E-value=3.3e-06 Score=71.31 Aligned_cols=125 Identities=7% Similarity=0.071 Sum_probs=87.7
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHH-HHhcCCh--H
Q 036287 194 MHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDL-LSRVGRP--E 270 (488)
Q Consensus 194 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~--~ 270 (488)
..|++++|+..|++..+.. +.+...+..+...+...|++++|...|..+.+. .+.+...+..+..+ |...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcchH
Confidence 4566777777777766642 334566666777777777777777777777642 12245666677777 6778887 8
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchh
Q 036287 271 EAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGT 321 (488)
Q Consensus 271 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 321 (488)
+|...+++. ...| +...|..+...+...|+++.|...++++++..|.++..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 888888876 3344 46778888888999999999999999999999887543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=2.4e-07 Score=80.13 Aligned_cols=173 Identities=9% Similarity=-0.059 Sum_probs=105.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 036287 155 GALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGG 231 (488)
Q Consensus 155 ~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 231 (488)
+..+......|++++|.+.++.-.+ .....|..+...+...|++++|+..|++..+. .|+...+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~-------- 77 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ-------- 77 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------
Confidence 3344555666777777777765433 24456777888888999999999999988873 2221100000
Q ss_pred CHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHH
Q 036287 232 LVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAK 309 (488)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 309 (488)
..+.-. . ......+..+..+|.+.|++++|+..+++. ...| +...|..+..++...|+++.|...++
T Consensus 78 ~~~~~~---~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 78 ILLDKK---K--------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp HHHHHH---H--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHH---H--------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 000000 0 011356677788888888888888888876 3334 57888889999999999999999999
Q ss_pred HHHhcCCCCchhHHHHHHHHhcCCChHHHH-HHHHHHHhC
Q 036287 310 RLLDCRSADSGTYVLLSNAYASSGKWKEAV-QIRAKMKEA 348 (488)
Q Consensus 310 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~ 348 (488)
++++..|.+..++..+..++...++.+++. ..+..|...
T Consensus 147 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 147 KAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999988888887777666 445555433
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=4.6e-06 Score=64.43 Aligned_cols=94 Identities=15% Similarity=0.154 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhc
Q 036287 254 EHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYAS 331 (488)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 331 (488)
..+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|.++..+..++.+|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 44555666666677777777766665 2223 466666666777777777777777777777777777777777777777
Q ss_pred CCChHHHHHHHHHHHh
Q 036287 332 SGKWKEAVQIRAKMKE 347 (488)
Q Consensus 332 ~g~~~~a~~~~~~m~~ 347 (488)
.|++++|.+.+++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 7777777777776654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.35 E-value=3.1e-06 Score=70.51 Aligned_cols=97 Identities=20% Similarity=0.113 Sum_probs=78.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 036287 252 QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAY 329 (488)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 329 (488)
+...+..+...|.+.|++++|++.|++. ...| +...|..+..++...|++++|...++++++.+|.++.+|..+..+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3556777777888888888888888776 3344 5777888888888888888888888888888888888888888888
Q ss_pred hcCCChHHHHHHHHHHHhC
Q 036287 330 ASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 330 ~~~g~~~~a~~~~~~m~~~ 348 (488)
...|++++|.+.+++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 8888888888888887664
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.35 E-value=7.8e-06 Score=77.05 Aligned_cols=143 Identities=10% Similarity=-0.002 Sum_probs=81.3
Q ss_pred CHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHH
Q 036287 65 LVENAFEVFSRVKV---KDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPN--------------EVTIVCVLSACS 127 (488)
Q Consensus 65 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------~~t~~~ll~~~~ 127 (488)
++++|...|+.... .+...|..+...|.+.|++++|+..|++..+...... ...+..+..++.
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 207 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 207 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445544444331 2456788888899999999999999998887531111 245555555555
Q ss_pred hcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHH-HH
Q 036287 128 QLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEA-VE 203 (488)
Q Consensus 128 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A-~~ 203 (488)
..|++++|...+..+++.. +.+...+..+..+|...|++++|...|++..+ .+...+..+...+...|+.++| ..
T Consensus 208 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 286 (336)
T 1p5q_A 208 KLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKK 286 (336)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666665555543 33445555555555555555555555555432 2344555555555555555555 23
Q ss_pred HHHHH
Q 036287 204 MFREM 208 (488)
Q Consensus 204 l~~~m 208 (488)
+|+.|
T Consensus 287 ~~~~~ 291 (336)
T 1p5q_A 287 LYANM 291 (336)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.35 E-value=1.5e-06 Score=86.19 Aligned_cols=116 Identities=9% Similarity=-0.003 Sum_probs=89.2
Q ss_pred HHhccCCHHHHHHHHHhcccccCccc-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChh
Q 036287 226 ACSHGGLVDLGFEIFQSMTRDYGIEP-QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQ 302 (488)
Q Consensus 226 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 302 (488)
.+...|++++|.+.+++..+. .| +...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 445667777777777777642 34 3677778888888888888888888876 4445 4788899999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHH--HhcCCChHHHHHHHHH
Q 036287 303 LGEQIAKRLLDCRSADSGTYVLLSNA--YASSGKWKEAVQIRAK 344 (488)
Q Consensus 303 ~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 344 (488)
+|...++++++..|.+..++..+..+ +.+.|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999998888888877 8888999999998874
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=2e-06 Score=67.67 Aligned_cols=95 Identities=12% Similarity=-0.111 Sum_probs=84.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhc
Q 036287 254 EHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYAS 331 (488)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 331 (488)
..+..+...+.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++++|.++.++..++.+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34566778888999999999999988 4445 588899999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhC
Q 036287 332 SGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 332 ~g~~~~a~~~~~~m~~~ 348 (488)
.|++++|...+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999988764
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=0.0001 Score=68.38 Aligned_cols=229 Identities=11% Similarity=-0.002 Sum_probs=125.2
Q ss_pred HHcCCHH-HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCc----------hHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 036287 92 VRNGEMA-RALDLFREMQRDNVRPN-EVTIVCVLSACSQLGA----------LELGRWIHSYMGKHRIDLNHIVGGALIN 159 (488)
Q Consensus 92 ~~~g~~~-~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~li~ 159 (488)
.+.|++. +|++++..++..+ |+ ...|+.--......+. ++++..++..++... +.+..+|+.-.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3445543 6777777777643 43 3334433333322222 456666677666654 446666666666
Q ss_pred HHHhcC--CHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc---
Q 036287 160 MYSRCG--DIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGR-SIEAVEMFREMINQGIRPTKVTFVGVLNACSHG--- 230 (488)
Q Consensus 160 ~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~--- 230 (488)
++.+.| .++++..+++++.+ +|..+|+--.-.+...|. ++++++.++++.+.. +-|...++.....+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 666666 37777777777664 466677776666667776 477777777777753 23444444333333222
Q ss_pred -----------CCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhc-----------CChHHHHHHHHhC-CCCCCHHH
Q 036287 231 -----------GLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRV-----------GRPEEAYDFITNM-KIAPDHIM 287 (488)
Q Consensus 231 -----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m-~~~p~~~~ 287 (488)
+.++++++.+...... .+-|...|+-+-..+.+. +.++++++.++++ ...||. .
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~ 272 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-K 272 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-H
T ss_pred cccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-c
Confidence 3456666666666531 122344554444444443 3455666666665 444542 2
Q ss_pred HHHHHHHH-----HHhCChhHHHHHHHHHHhcCCCCchhHHHHHH
Q 036287 288 LGSLLSAC-----KIHGKLQLGEQIAKRLLDCRSADSGTYVLLSN 327 (488)
Q Consensus 288 ~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 327 (488)
|..+-.+. ...+..++....+.++.+++|....-|.-+..
T Consensus 273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 273 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 32211111 12355566667777777777766555554443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=1.5e-06 Score=75.10 Aligned_cols=120 Identities=8% Similarity=-0.085 Sum_probs=55.0
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---------------
Q 036287 55 VMINCYVEHGLVENAFEVFSRVKVK---DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNE--------------- 116 (488)
Q Consensus 55 ~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 116 (488)
..+.+....|++++|.+.++.-... ....|..+...+.+.|++++|+..|++..+... .+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFI-HTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT-TCTTCCCHHHHHHHHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-cccccchhhHHHHHHHHH
Confidence 3344444555666666655543211 344677777788888888888888888876421 111
Q ss_pred -HHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 036287 117 -VTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEE 176 (488)
Q Consensus 117 -~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 176 (488)
..+..+..++...|++++|...+..+++.. +.+..++..+..+|...|++++|.+.|++
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 333444444444444444444444444432 22333344444444444444444444443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=7.8e-06 Score=63.09 Aligned_cols=105 Identities=11% Similarity=0.035 Sum_probs=61.8
Q ss_pred HHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhC
Q 036287 222 GVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHG 299 (488)
Q Consensus 222 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 299 (488)
.+...+...|++++|...++...+. .+.+...+..+...|.+.|++++|...+++. ...| +...|..+...+...|
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 3334444444444444444444421 1123445555555566666666666666554 2223 4666777777788888
Q ss_pred ChhHHHHHHHHHHhcCCCCchhHHHHHHH
Q 036287 300 KLQLGEQIAKRLLDCRSADSGTYVLLSNA 328 (488)
Q Consensus 300 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 328 (488)
++++|...++++.+..|.++..+..+..+
T Consensus 87 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 87 RFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 88888888888888888776666655544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.3e-05 Score=64.98 Aligned_cols=107 Identities=10% Similarity=-0.062 Sum_probs=61.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhcccccCcccC----hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 036287 220 FVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ----IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLS 293 (488)
Q Consensus 220 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 293 (488)
+..+...+...|++++|...|+...+ ..|+ ...+..+...|...|++++|.+.+++. ...| +...|..+..
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 33333444444444444444444432 1232 344555555666666666666666554 2233 4566667777
Q ss_pred HHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 036287 294 ACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAY 329 (488)
Q Consensus 294 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 329 (488)
++...|++++|...++++++..|.+...+..+..+.
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 777777888888888888777777766655555443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=6.7e-06 Score=66.62 Aligned_cols=97 Identities=13% Similarity=0.059 Sum_probs=89.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHH
Q 036287 252 QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLS 326 (488)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 326 (488)
+...+..+...+...|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|.++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4677888899999999999999999987 66777 678888999999999999999999999999999999999999
Q ss_pred HHHhcCCChHHHHHHHHHHHhC
Q 036287 327 NAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 327 ~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
.+|...|++++|.+.+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999988764
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00015 Score=67.63 Aligned_cols=168 Identities=13% Similarity=-0.017 Sum_probs=98.6
Q ss_pred HHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-chH
Q 036287 60 YVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNG-EMARALDLFREMQRDNVRPNEVTIVCVLSACSQL-G-ALE 133 (488)
Q Consensus 60 ~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-~-~~~ 133 (488)
..+.+..++|+++++.+. +.+..+||.--..+...| .+++++++++.+.... +-+..+|+.-...+... + +++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 344444556666666654 234456666666666666 4677777777776653 33455565555555554 5 666
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHH--------HHHHHHHhccc---CCHHHHHHHHHHHHhcCC-----
Q 036287 134 LGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDID--------KALQVFEEMKE---RDVTTYNSLIAGLAMHGR----- 197 (488)
Q Consensus 134 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~--------~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----- 197 (488)
++.+++..+++.. +.+-.+|+--.-+..+.|.++ ++++.++++.+ .|..+|+-....+.+.++
T Consensus 143 ~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 143 SEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccch
Confidence 6666666666554 345555554444444444443 67777776664 466778877777777665
Q ss_pred --hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 036287 198 --SIEAVEMFREMINQGIRPTKVTFVGVLNACSHG 230 (488)
Q Consensus 198 --~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 230 (488)
++++++.++++... -+-|...++.+-..+.+.
T Consensus 222 ~~~~eELe~~~~aI~~-~P~n~SaW~Ylr~Ll~~~ 255 (349)
T 3q7a_A 222 RSLQDELIYILKSIHL-IPHNVSAWNYLRGFLKHF 255 (349)
T ss_dssp HHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhc
Confidence 57888888888774 233445554444434333
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=4.5e-06 Score=68.32 Aligned_cols=93 Identities=10% Similarity=0.003 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMY 161 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 161 (488)
..+..+...+.+.|++++|+..|++..... +.+...+..+..++...|++++|...+..+++.. +.+...+..+..+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 344445555555555555555555554432 2234444444444444444444444444444432 22233333344444
Q ss_pred HhcCCHHHHHHHHHh
Q 036287 162 SRCGDIDKALQVFEE 176 (488)
Q Consensus 162 ~~~g~~~~A~~~~~~ 176 (488)
...|++++|.+.|++
T Consensus 100 ~~~g~~~~A~~~~~~ 114 (148)
T 2vgx_A 100 LQXGELAEAESGLFL 114 (148)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 444444444444433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.27 E-value=2.6e-06 Score=67.66 Aligned_cols=94 Identities=11% Similarity=0.014 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCc-------hhHHH
Q 036287 254 EHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADS-------GTYVL 324 (488)
Q Consensus 254 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~~ 324 (488)
..+..+...+.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++++|.+. .+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45566777888888888888888876 4445 477788888888888889999888888888776553 25667
Q ss_pred HHHHHhcCCChHHHHHHHHHHHh
Q 036287 325 LSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 325 l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
++.+|...|++++|.+.|++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 77888888999999988887755
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.25 E-value=1.3e-05 Score=79.38 Aligned_cols=117 Identities=10% Similarity=0.033 Sum_probs=73.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 036287 157 LINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLV 233 (488)
Q Consensus 157 li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 233 (488)
+...|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|++.|++..+.. +.+...+..+..++...|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 34456677788888877776653 356677777777777788888888777777742 23455666667777777777
Q ss_pred HHHHHHHHhcccccCcccC-hhhHHHHHHH--HHhcCChHHHHHHHH
Q 036287 234 DLGFEIFQSMTRDYGIEPQ-IEHYGCIVDL--LSRVGRPEEAYDFIT 277 (488)
Q Consensus 234 ~~a~~~~~~~~~~~~~~p~-~~~~~~li~~--~~~~g~~~~A~~~~~ 277 (488)
++|.+.|+++.+. .|+ ...+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777776642 232 3344444444 666667777776666
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.5e-05 Score=61.52 Aligned_cols=92 Identities=8% Similarity=-0.107 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMY 161 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 161 (488)
..|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...+..+++.. +.+...+..+..+|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 345555556666666666666666655542 2234444445555555555555555555544443 22233333344444
Q ss_pred HhcCCHHHHHHHHH
Q 036287 162 SRCGDIDKALQVFE 175 (488)
Q Consensus 162 ~~~g~~~~A~~~~~ 175 (488)
...|++++|...|+
T Consensus 83 ~~~~~~~~A~~~~~ 96 (126)
T 3upv_A 83 IAVKEYASALETLD 96 (126)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHHhCHHHHHHHHH
Confidence 44444444444333
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.21 E-value=7.7e-06 Score=68.07 Aligned_cols=105 Identities=10% Similarity=-0.033 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHhcccccCccc-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 036287 218 VTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEP-QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSA 294 (488)
Q Consensus 218 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 294 (488)
..+..+...+...|++++|...|+...+. .| +...|..+..+|.+.|++++|+..+++. ...| +...|..+..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34444555555566666666666655531 23 4556667777777777777777777766 3344 47788889999
Q ss_pred HHHhCChhHHHHHHHHHHhcCCCCchhHHHH
Q 036287 295 CKIHGKLQLGEQIAKRLLDCRSADSGTYVLL 325 (488)
Q Consensus 295 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 325 (488)
+...|++++|...+++++++.|.+...+...
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 119 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKR 119 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 9999999999999999999999887755443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.8e-05 Score=61.57 Aligned_cols=110 Identities=5% Similarity=-0.085 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMY 161 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 161 (488)
.+|..+...+.+.|++++|+..|++.++.. +-+...|..+..++...|++++|.+.+...++.... +...+..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~---- 82 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE-TRADYKLI---- 82 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCHHHH----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc-cchhhHHH----
Confidence 456666666777777777777777666542 234455555555556666666666555555443200 00000000
Q ss_pred HhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 036287 162 SRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVT 219 (488)
Q Consensus 162 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 219 (488)
..+|..+...+...|++++|++.|++.... .||..+
T Consensus 83 --------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 118 (127)
T 4gcn_A 83 --------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPEL 118 (127)
T ss_dssp --------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHH
T ss_pred --------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHH
Confidence 123445555666666777777777666652 344443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.18 E-value=4.6e-05 Score=74.24 Aligned_cols=161 Identities=8% Similarity=-0.052 Sum_probs=88.5
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHcC--CCC---cHhHHHHHHHHHHhcCCHHHHHHHHHhccc-----C----CHHH
Q 036287 119 IVCVLSACSQLGALELGRWIHSYMGKHR--IDL---NHIVGGALINMYSRCGDIDKALQVFEEMKE-----R----DVTT 184 (488)
Q Consensus 119 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~----~~~~ 184 (488)
+..+...|...|++++|.+.+..+.+.- +.. ...+.+.+...+...|+.+.|..+++.... . -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4445555555555555555555543321 110 012233334445555666666666655432 1 1235
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcC----CCCC-HHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-----hh
Q 036287 185 YNSLIAGLAMHGRSIEAVEMFREMINQG----IRPT-KVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-----IE 254 (488)
Q Consensus 185 ~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~ 254 (488)
+..+...|...|++++|..++++....- -+|. ..++..++..|...|++++|..+++.......-.++ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 6667777777777777777777665421 1111 235556667777777877777777765532111111 24
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC
Q 036287 255 HYGCIVDLLSRVGRPEEAYDFITNM 279 (488)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~m 279 (488)
.+..+...+...|++++|...|.+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5566666677778888887766554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.17 E-value=8.7e-06 Score=64.38 Aligned_cols=92 Identities=17% Similarity=0.132 Sum_probs=68.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC---chhHHHHHHH
Q 036287 257 GCIVDLLSRVGRPEEAYDFITNM-KIAPD-H---IMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD---SGTYVLLSNA 328 (488)
Q Consensus 257 ~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 328 (488)
..+...+.+.|++++|.+.|++. ...|+ . ..+..+..++...|++++|...++++++..|.+ +.++..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34556677778888887777776 22333 2 466677777888888888888888888888877 6667888888
Q ss_pred HhcCCChHHHHHHHHHHHhC
Q 036287 329 YASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 329 ~~~~g~~~~a~~~~~~m~~~ 348 (488)
|...|++++|...++++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888877653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.16 E-value=2.9e-05 Score=62.82 Aligned_cols=94 Identities=15% Similarity=-0.002 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMY 161 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 161 (488)
..+..+...+.+.|++++|+..|++..... +.+...+..+..++...|++++|...++.+++.. +.+...+..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 345555556666666666666666665543 2344555555555566666666666666555543 23344445555555
Q ss_pred HhcCCHHHHHHHHHhc
Q 036287 162 SRCGDIDKALQVFEEM 177 (488)
Q Consensus 162 ~~~g~~~~A~~~~~~~ 177 (488)
...|++++|.+.|++.
T Consensus 97 ~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSA 112 (142)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 5555555555555544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.9e-05 Score=74.74 Aligned_cols=163 Identities=7% Similarity=-0.144 Sum_probs=100.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHhccCCHHHHHHHHHhccccc---CcccC-hhh
Q 036287 185 YNSLIAGLAMHGRSIEAVEMFREMINQG-IRPTKV----TFVGVLNACSHGGLVDLGFEIFQSMTRDY---GIEPQ-IEH 255 (488)
Q Consensus 185 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~ 255 (488)
+..+...|...|++++|.+.+.++...- ..++.. +.+.+-..+...|+.+++..++....... +..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556666666677777766666654311 111111 12222233445567777777666554211 11222 456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-----C--CCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcC---CCC----ch
Q 036287 256 YGCIVDLLSRVGRPEEAYDFITNM-----K--IAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCR---SAD----SG 320 (488)
Q Consensus 256 ~~~li~~~~~~g~~~~A~~~~~~m-----~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~----~~ 320 (488)
+..|...|...|++++|..++++. + -+|. ..++..++..|...|++++|..+++++.... +.+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 677888888888888888877765 1 1222 5567778888888899998888888887642 222 23
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 321 TYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 321 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
.+..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456677778888899888887776643
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.15 E-value=4.9e-05 Score=60.64 Aligned_cols=96 Identities=8% Similarity=-0.127 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 036287 80 DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALIN 159 (488)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 159 (488)
+...|..+...+...|++++|+..|++..... +.+...+..+..++...|+++.|...+..+++.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 45556666666666666666666666655542 2234455555555555555555555555555443 223444444444
Q ss_pred HHHhcCCHHHHHHHHHhc
Q 036287 160 MYSRCGDIDKALQVFEEM 177 (488)
Q Consensus 160 ~y~~~g~~~~A~~~~~~~ 177 (488)
+|...|++++|...|++.
T Consensus 86 ~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHH
Confidence 444444444444444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.14 E-value=2e-05 Score=60.14 Aligned_cols=61 Identities=13% Similarity=-0.017 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGK 144 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 144 (488)
.|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|.+.++.+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 68 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVIN 68 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34444444444444444444444444432 22333333344444444444444444444433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.13 E-value=1.2e-05 Score=63.30 Aligned_cols=96 Identities=9% Similarity=0.143 Sum_probs=80.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC-------chhHH
Q 036287 253 IEHYGCIVDLLSRVGRPEEAYDFITNM-KIA-PDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD-------SGTYV 323 (488)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 323 (488)
...+..+...+...|++++|...+++. ... .+...+..+...+...|+++.|...++++++..|.+ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345677788888889999998888877 323 357788888899999999999999999999987655 77888
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 324 LLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 324 ~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
.++.+|...|++++|.+.+++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999988764
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.13 E-value=2.9e-05 Score=61.05 Aligned_cols=62 Identities=10% Similarity=0.029 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGK 144 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 144 (488)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+..+.+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 66 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 345556666666666666666666665542 23444455555555555555555555555444
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.11 E-value=1.3e-05 Score=65.47 Aligned_cols=62 Identities=16% Similarity=0.065 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhc-------CCCCchhH----HHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 286 IMLGSLLSACKIHGKLQLGEQIAKRLLDC-------RSADSGTY----VLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 286 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
..|..+..++...|++++|+..+++++++ +|++..+| ...+.++...|++++|+..|++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 48888888999999999999999999998 99998899 9999999999999999999998865
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.09 E-value=1.5e-05 Score=78.64 Aligned_cols=144 Identities=8% Similarity=0.026 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHH
Q 036287 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVD 261 (488)
Q Consensus 182 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 261 (488)
...|..+...|.+.|++++|+..|++..+. .|+...+ . .+...+ .. ......|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~~--------~~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-SE--------SFLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-HH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-HH--------HHHHHHHHHHHH
Confidence 345666666677777777777777776653 2221100 0 000000 00 011467788888
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHH
Q 036287 262 LLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAV 339 (488)
Q Consensus 262 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 339 (488)
+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|...|+++++++|.+..++..+..++...|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 4444 58889999999999999999999999999999999999999999999999988876
Q ss_pred H-HHHHHHh
Q 036287 340 Q-IRAKMKE 347 (488)
Q Consensus 340 ~-~~~~m~~ 347 (488)
+ .++.|..
T Consensus 406 ~~~~~~~f~ 414 (457)
T 1kt0_A 406 RRIYANMFK 414 (457)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHh
Confidence 4 4555543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.08 E-value=3.6e-06 Score=65.65 Aligned_cols=82 Identities=12% Similarity=0.119 Sum_probs=51.1
Q ss_pred cCChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHH
Q 036287 266 VGRPEEAYDFITNM-KI---AP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQ 340 (488)
Q Consensus 266 ~g~~~~A~~~~~~m-~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 340 (488)
.|++++|+..|++. .. .| +...|..+...+...|++++|...++++++..|.++.++..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45556666666555 33 13 245566666666777777777777777777777777777777777777777777777
Q ss_pred HHHHHHh
Q 036287 341 IRAKMKE 347 (488)
Q Consensus 341 ~~~~m~~ 347 (488)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.6e-05 Score=65.89 Aligned_cols=64 Identities=13% Similarity=0.072 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 285 HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 285 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
...|..+..++...|+++.|...++++++++|.++.+|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4678888889999999999999999999999999999999999999999999999999988664
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=3.5e-05 Score=60.42 Aligned_cols=88 Identities=11% Similarity=-0.037 Sum_probs=36.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 036287 87 MIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGD 166 (488)
Q Consensus 87 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 166 (488)
+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+++.. +.+...+..+..+|...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 3344444444444444444444432 2233334444444444444444444444444332 1223333334444444444
Q ss_pred HHHHHHHHHh
Q 036287 167 IDKALQVFEE 176 (488)
Q Consensus 167 ~~~A~~~~~~ 176 (488)
+++|...|++
T Consensus 101 ~~~A~~~~~~ 110 (121)
T 1hxi_A 101 ANAALASLRA 110 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.06 E-value=2.9e-05 Score=63.63 Aligned_cols=127 Identities=13% Similarity=0.009 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCH----HHHHHHHHHHHhcCchHHHHHHHHHHHHcC----CCC-cHh
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRDNVR-PNE----VTIVCVLSACSQLGALELGRWIHSYMGKHR----IDL-NHI 152 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~-~~~ 152 (488)
++..+...|...|++++|+..+++..+.... ++. .++..+...+...|++++|...+....+.. .++ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555666666666666666666665442100 111 234444444555555555555554443321 000 122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccc-----CC----HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036287 153 VGGALINMYSRCGDIDKALQVFEEMKE-----RD----VTTYNSLIAGLAMHGRSIEAVEMFREMI 209 (488)
Q Consensus 153 ~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~ 209 (488)
++..+...|...|++++|...+++..+ .+ ..++..+...|...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 344445555555555555555544331 11 1234444445555555555555555443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00075 Score=62.56 Aligned_cols=218 Identities=11% Similarity=-0.007 Sum_probs=151.3
Q ss_pred HhcCch-HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC----------HHHHHHHHHhccc---CCHHHHHHHHHHH
Q 036287 127 SQLGAL-ELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGD----------IDKALQVFEEMKE---RDVTTYNSLIAGL 192 (488)
Q Consensus 127 ~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~ 192 (488)
.+.|.+ ++|......++... +.+..+|+.--......|. +++++.+++.+.. ++..+|+.-...+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 344554 47888888888775 4455666654444433333 6788888888764 5778999888888
Q ss_pred HhcCC--hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC-HHHHHHHHHhcccccCcccChhhHHHHHHHHHhc---
Q 036287 193 AMHGR--SIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGL-VDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRV--- 266 (488)
Q Consensus 193 ~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--- 266 (488)
...|+ +++++..++++.+.. +-|...++.-.-.+...|. ++++++.+..+.+. -+-|...|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhc
Confidence 88884 899999999999864 4456666655555666777 68999999999853 234566676666655554
Q ss_pred -----------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh-----------CChhHHHHHHHHHHhcCCCCchhH
Q 036287 267 -----------GRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIH-----------GKLQLGEQIAKRLLDCRSADSGTY 322 (488)
Q Consensus 267 -----------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~ 322 (488)
+.++++++.+.+. ...| |...|+-+-..+... +.++++.+.++++++..|++.-++
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l 275 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCL 275 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHH
Confidence 4578888888877 3444 577787555554444 357899999999999999885554
Q ss_pred HHHHH---HHhcCCChHHHHHHHHHHHhC
Q 036287 323 VLLSN---AYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 323 ~~l~~---~~~~~g~~~~a~~~~~~m~~~ 348 (488)
..++. .....|..+++...+.++.+-
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 44332 223467788888888888763
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.1e-05 Score=66.08 Aligned_cols=93 Identities=17% Similarity=0.161 Sum_probs=60.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcC------CCCch
Q 036287 255 HYGCIVDLLSRVGRPEEAYDFITNM----KIAPD----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCR------SADSG 320 (488)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~ 320 (488)
.+..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...+++.++.. +....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4455555566666666666655554 10111 4456667777777888888888888777642 11234
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 321 TYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 321 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
++..+...|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677888888888999999888887654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.99 E-value=5.5e-05 Score=59.62 Aligned_cols=95 Identities=14% Similarity=0.014 Sum_probs=55.9
Q ss_pred HHhccCCHHHHHHHHHhcccccCcccC-h---hhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHH
Q 036287 226 ACSHGGLVDLGFEIFQSMTRDYGIEPQ-I---EHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD----HIMLGSLLSACK 296 (488)
Q Consensus 226 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~ 296 (488)
.+...|++++|...|..+.+. .|+ . ..+..+..+|.+.|++++|...+++. ...|+ ...+..+..++.
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 344445555555555554432 122 1 34455556666666666666666655 22232 455666777777
Q ss_pred HhCChhHHHHHHHHHHhcCCCCchhHH
Q 036287 297 IHGKLQLGEQIAKRLLDCRSADSGTYV 323 (488)
Q Consensus 297 ~~g~~~~a~~~~~~~~~~~p~~~~~~~ 323 (488)
..|++++|...++++++..|.++....
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 888888888888888888777654433
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.97 E-value=3.8e-05 Score=73.25 Aligned_cols=136 Identities=9% Similarity=-0.028 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCccc-ChhhHHHHHH
Q 036287 183 TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEP-QIEHYGCIVD 261 (488)
Q Consensus 183 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 261 (488)
..|..+...+.+.|++++|+..|++..+. .|+.. .... ..... ...| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHH---HHHHHHHHHHHHHHH
Confidence 45777778888888888888888887752 11100 0000 11111 1222 3578888999
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHH
Q 036287 262 LLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAV 339 (488)
Q Consensus 262 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 339 (488)
+|.+.|++++|++.+++. ...| +...|..+..++...|++++|...+++++++.|.+...+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 6566 47889999999999999999999999999999999989999988888888777665
Q ss_pred H
Q 036287 340 Q 340 (488)
Q Consensus 340 ~ 340 (488)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.9e-05 Score=74.44 Aligned_cols=147 Identities=10% Similarity=-0.047 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHH
Q 036287 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVD 261 (488)
Q Consensus 182 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 261 (488)
...|..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 456777888888999999999999998873 455432 233444444433221 136788888
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHH-hcCCChHHH
Q 036287 262 LLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAY-ASSGKWKEA 338 (488)
Q Consensus 262 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a 338 (488)
+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...|+++++++|.+..++..|..+. ...+..+.+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 4444 5788999999999999999999999999999999888888887774 345667778
Q ss_pred HHHHHHHHhC
Q 036287 339 VQIRAKMKEA 348 (488)
Q Consensus 339 ~~~~~~m~~~ 348 (488)
.+.++.|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888877553
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.91 E-value=8.2e-05 Score=73.38 Aligned_cols=124 Identities=12% Similarity=0.084 Sum_probs=97.6
Q ss_pred HHhccCCHHHHHHHHHhccccc--Cc---ccC-hhhHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHH
Q 036287 226 ACSHGGLVDLGFEIFQSMTRDY--GI---EPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM---------KIAPD-HIMLG 289 (488)
Q Consensus 226 a~~~~g~~~~a~~~~~~~~~~~--~~---~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~ 289 (488)
.+...|++++|+.++.+..+.. -+ .|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3557889999988887765421 12 222 567889999999999999999988875 33444 57789
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHh-----cCCCCchh---HHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 290 SLLSACKIHGKLQLGEQIAKRLLD-----CRSADSGT---YVLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 290 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
.|...|...|++++|+.+++++++ ++|+.+.+ ...|..++...|++++|+.++..+++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987 56776554 4567788889999999999999998753
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.90 E-value=2.8e-05 Score=73.23 Aligned_cols=151 Identities=11% Similarity=0.030 Sum_probs=72.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 036287 151 HIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHG 230 (488)
Q Consensus 151 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 230 (488)
...+..+...|.+.|++++|...|++....+.... .+...|+..++...+. ...+..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45567788899999999999999998764221111 1222333333332221 12556666677777
Q ss_pred CCHHHHHHHHHhcccccCccc-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHHhCChhHHHH
Q 036287 231 GLVDLGFEIFQSMTRDYGIEP-QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLSA-CKIHGKLQLGEQ 306 (488)
Q Consensus 231 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~-~~~~g~~~~a~~ 306 (488)
|++++|...++...+ +.| +...|..+..+|...|++++|...|++. .+.|+ ...+..+... ....+..+.+..
T Consensus 244 g~~~~A~~~~~~al~---~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 244 KRYDEAIGHCNIVLT---EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred CCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777764 233 4667777777888888888888888776 55554 3344444433 234456677778
Q ss_pred HHHHHHhcCCCCc
Q 036287 307 IAKRLLDCRSADS 319 (488)
Q Consensus 307 ~~~~~~~~~p~~~ 319 (488)
.++++++..|.++
T Consensus 321 ~~~~~l~~~p~~~ 333 (338)
T 2if4_A 321 MYKGIFKGKDEGG 333 (338)
T ss_dssp -------------
T ss_pred HHHHhhCCCCCCC
Confidence 8888887776553
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00014 Score=71.50 Aligned_cols=120 Identities=8% Similarity=-0.001 Sum_probs=83.0
Q ss_pred eeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036287 50 VVASTVMINCYVEHGLVENAFEVFSRVK---VKD---------------TVCWTAMIDGLVRNGEMARALDLFREMQRDN 111 (488)
Q Consensus 50 ~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 111 (488)
...|..+...|.+.|++++|...|++.. +.+ ..+|+.+..+|.+.|++++|+..|++.++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 4567777788888888888888887654 223 4677777788888888888888888777753
Q ss_pred CCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 036287 112 VRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKAL 171 (488)
Q Consensus 112 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 171 (488)
+.+...+..+..++...|++++|...+..+++.. +.+..++..+..++.+.|+.++|.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777777777654 334556666666777666666554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.85 E-value=2.9e-05 Score=63.32 Aligned_cols=115 Identities=13% Similarity=-0.031 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcc-cChhhHHHHHH
Q 036287 183 TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIE-PQIEHYGCIVD 261 (488)
Q Consensus 183 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~ 261 (488)
..+......+.+.|++++|+..|++.++. .|+...- .. .... .+...|..+..
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~---------------------~a---~~~~~~~a~a~~n~g~ 65 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPE---------------------EA---FDHAGFDAFCHAGLAE 65 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTT---------------------SC---CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcch---------------------hh---hhhccchHHHHHHHHH
Confidence 34566666777788888888888887773 3331000 00 0000 11236666666
Q ss_pred HHHhcCChHHHHHHHHhC-CC-------CCC-HHHH----HHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHH
Q 036287 262 LLSRVGRPEEAYDFITNM-KI-------APD-HIML----GSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYV 323 (488)
Q Consensus 262 ~~~~~g~~~~A~~~~~~m-~~-------~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 323 (488)
++.+.|++++|+..+++. .+ .|+ ...| .....++...|++++|+..|++++++.|.+...+.
T Consensus 66 al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~ 140 (159)
T 2hr2_A 66 ALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETP 140 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCT
T ss_pred HHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 777777777776666654 33 776 5678 89999999999999999999999999988865544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.83 E-value=2.4e-05 Score=60.87 Aligned_cols=91 Identities=15% Similarity=0.142 Sum_probs=61.8
Q ss_pred cCCHHHHHHHHHhcccccC--cccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHH
Q 036287 230 GGLVDLGFEIFQSMTRDYG--IEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGE 305 (488)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 305 (488)
.|++++|...|++..+. + -+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45566666666666531 1 1223566777777788888888888887776 3334 4677788888888889999999
Q ss_pred HHHHHHHhcCCCCchh
Q 036287 306 QIAKRLLDCRSADSGT 321 (488)
Q Consensus 306 ~~~~~~~~~~p~~~~~ 321 (488)
..++++++..|.++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 9998888888877543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00015 Score=69.13 Aligned_cols=119 Identities=9% Similarity=0.014 Sum_probs=80.9
Q ss_pred eHHHHHHHHHHcCCHHHHHHHHhhcCC-------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 036287 52 ASTVMINCYVEHGLVENAFEVFSRVKV-------------------KDTVCWTAMIDGLVRNGEMARALDLFREMQRDNV 112 (488)
Q Consensus 52 ~~~~li~~~~~~g~~~~A~~~f~~~~~-------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 112 (488)
.|..+...+.+.|++++|++.|++... .+..+|+.+..+|.+.|++++|+..+++.++..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 466666777777777777777765442 134567777778888888888888888777753
Q ss_pred CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 036287 113 RPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQ 172 (488)
Q Consensus 113 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 172 (488)
+.+...+..+..++...|++++|...++.+.+.. +.+..++..+..++.+.++.+++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356677777777777777777777777777664 3355566666666666666665543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00013 Score=54.92 Aligned_cols=65 Identities=18% Similarity=0.185 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 284 DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 284 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
+...|..+...+...|++++|...++++++.+|.++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 57889999999999999999999999999999999999999999999999999999999988653
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0012 Score=66.47 Aligned_cols=167 Identities=8% Similarity=-0.029 Sum_probs=103.4
Q ss_pred HHHHHHHHhccc---CCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC--C
Q 036287 168 DKALQVFEEMKE---RDVTTYNSLIAGLAMHGR----------SIEAVEMFREMINQGIRPTKVTFVGVLNACSHGG--L 232 (488)
Q Consensus 168 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g--~ 232 (488)
++|.+.++++.. .+..+|+.--..+...|+ ++++++.++++.+.. +-+..+|..-.-++.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccccc
Confidence 445555555443 234455555555554444 566666666666542 223444444444455555 4
Q ss_pred HHHHHHHHHhcccccCcccChhhHHHHHHHHHhcC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh-----------
Q 036287 233 VDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVG-RPEEAYDFITNM-KIAP-DHIMLGSLLSACKIH----------- 298 (488)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~----------- 298 (488)
++++.+.++++.+. -+-+...|+.-...+.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 125 ~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 56666666666642 1223445555555555666 666777776666 4444 466666666655553
Q ss_pred ---CChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHH
Q 036287 299 ---GKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKE 337 (488)
Q Consensus 299 ---g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 337 (488)
+.++++.+.+.+++..+|.+..+|..+...+.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999888554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.76 E-value=9.1e-05 Score=57.20 Aligned_cols=78 Identities=14% Similarity=0.078 Sum_probs=65.2
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 271 EAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 271 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
+|.+.+++. ...| +...|..+...+...|++++|...++++++.+|.+..+|..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355555554 4444 57788888899999999999999999999999999899999999999999999999999988653
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00034 Score=57.73 Aligned_cols=112 Identities=14% Similarity=0.122 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHH
Q 036287 81 TVCWTAMIDGLVRNGEMARALDLFREMQRDN------VRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVG 154 (488)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 154 (488)
...|......+.+.|++++|+..|.+.+..- -.|+...+ ..+ -+.+..++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~----~~~~~~~~ 66 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VEL----DRKNIPLY 66 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHH----HHTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHH----HHHHHHHH
Confidence 4467777788888888888888888776530 01111100 000 02234566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 036287 155 GALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKV 218 (488)
Q Consensus 155 ~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 218 (488)
..+..+|.+.|++++|...+++..+ .+...|..+..+|...|++++|+..|++..+. .|+..
T Consensus 67 ~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 67 ANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 6677777777777777777776553 35567777777777777777777777777763 45543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.73 E-value=5.5e-05 Score=57.74 Aligned_cols=91 Identities=19% Similarity=0.071 Sum_probs=70.1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC------chhHH
Q 036287 252 QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD------SGTYV 323 (488)
Q Consensus 252 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 323 (488)
+...+..+...+.+.|++++|.+.+++. ...| +...|..+..++...|++++|...++++++..|.+ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3456777788888888888888888876 3334 57788888889999999999999999999999887 66666
Q ss_pred HHHHHHhcCCChHHHHHHH
Q 036287 324 LLSNAYASSGKWKEAVQIR 342 (488)
Q Consensus 324 ~l~~~~~~~g~~~~a~~~~ 342 (488)
.+..++...|+++.|.+.+
T Consensus 83 ~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHhHhhhHhHH
Confidence 7777777666665554433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00013 Score=53.18 Aligned_cols=80 Identities=15% Similarity=0.162 Sum_probs=62.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 036287 253 IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYA 330 (488)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 330 (488)
...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++.+|.++.++..+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456667777788888888888888776 3333 56778888888888899999999999998888888888888877775
Q ss_pred cC
Q 036287 331 SS 332 (488)
Q Consensus 331 ~~ 332 (488)
..
T Consensus 89 ~~ 90 (91)
T 1na3_A 89 KQ 90 (91)
T ss_dssp HH
T ss_pred hc
Confidence 54
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.63 E-value=6.3e-05 Score=57.38 Aligned_cols=94 Identities=12% Similarity=0.014 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCc------HhHH
Q 036287 81 TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLN------HIVG 154 (488)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~------~~~~ 154 (488)
...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+..+++... .+ ..++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS-TAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS-STTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CccHHHHHHHHH
Confidence 4456666667777777777777777766643 33555666666666667777777776666665531 11 3334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHh
Q 036287 155 GALINMYSRCGDIDKALQVFEE 176 (488)
Q Consensus 155 ~~li~~y~~~g~~~~A~~~~~~ 176 (488)
..+..++...|+.+.|...|++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHHH
Confidence 4444455555544444444433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0022 Score=51.28 Aligned_cols=110 Identities=14% Similarity=-0.004 Sum_probs=68.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHH
Q 036287 95 GEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSR----CGDIDKA 170 (488)
Q Consensus 95 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A 170 (488)
+++++|++.|++..+.| .|+.. +...+...+..++|.++++...+.| +...+..|..+|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35666777777776665 33333 4444555556666777777766664 45555666666666 5677777
Q ss_pred HHHHHhccc-CCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 036287 171 LQVFEEMKE-RDVTTYNSLIAGLAM----HGRSIEAVEMFREMINQG 212 (488)
Q Consensus 171 ~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 212 (488)
.+.|++..+ .+..++..|...|.. .++.++|+..|++..+.|
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777766543 455666666666666 666777777777666654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=7.3e-05 Score=60.84 Aligned_cols=84 Identities=18% Similarity=0.051 Sum_probs=66.7
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCC----------hhHHHHHHHHHHhcCCCCchhHHHHHHHHhcC
Q 036287 265 RVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGK----------LQLGEQIAKRLLDCRSADSGTYVLLSNAYASS 332 (488)
Q Consensus 265 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 332 (488)
+.+.+++|.+.++.. ...| +...|..+..++...++ +++|+..|+++++++|.+..+|..+.++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 445667777777665 3344 46667767666666655 46999999999999999999999999999987
Q ss_pred C-----------ChHHHHHHHHHHHhC
Q 036287 333 G-----------KWKEAVQIRAKMKEA 348 (488)
Q Consensus 333 g-----------~~~~a~~~~~~m~~~ 348 (488)
| ++++|.+.|++..+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh
Confidence 5 899999999998774
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00046 Score=68.05 Aligned_cols=87 Identities=13% Similarity=-0.031 Sum_probs=45.3
Q ss_pred HHHcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCchHHHHHHHHHHHHc-----CC-CC-cHhHHHH
Q 036287 91 LVRNGEMARALDLFREMQRD---NVRPN----EVTIVCVLSACSQLGALELGRWIHSYMGKH-----RI-DL-NHIVGGA 156 (488)
Q Consensus 91 ~~~~g~~~~A~~~~~~m~~~---g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~-~~-~~~~~~~ 156 (488)
+..+|++++|+.++++.++. -+.|+ ..+++.+..+|...|++++|..+++++++. |. .| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777665441 11121 245555666666666666666665555432 11 11 1334455
Q ss_pred HHHHHHhcCCHHHHHHHHHhc
Q 036287 157 LINMYSRCGDIDKALQVFEEM 177 (488)
Q Consensus 157 li~~y~~~g~~~~A~~~~~~~ 177 (488)
|...|...|++++|+.++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 555555555555555555443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0023 Score=62.03 Aligned_cols=116 Identities=12% Similarity=0.116 Sum_probs=88.9
Q ss_pred HHHHHhcCChHHHHHHHHhC------CCCCC----HHHHHHHHHHHHHhCChhHHHHHHHHHHh-----cCCCCc---hh
Q 036287 260 VDLLSRVGRPEEAYDFITNM------KIAPD----HIMLGSLLSACKIHGKLQLGEQIAKRLLD-----CRSADS---GT 321 (488)
Q Consensus 260 i~~~~~~g~~~~A~~~~~~m------~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~ 321 (488)
+.-+.+.|++++|+.++++. -+.|+ ..+++.|..+|...|++++|+.+++++++ ++|.++ .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 45566788999998888765 12232 56788999999999999999999999886 345544 46
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHH
Q 036287 322 YVLLSNAYASSGKWKEAVQIRAKMKEAGVQKEPGCSSIEVNNEIHEFILGDIRHPQREQIYKKMQELKQIVK 393 (488)
Q Consensus 322 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 393 (488)
++.|+..|...|++++|..++++..+--.. ..| ..||...+++..+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~-----------------~lG-~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV-----------------THG-REHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------HTC-TTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-----------------hcC-CCChHHHHHHHHHHHHHHHHh
Confidence 778999999999999999999987652110 112 379999999988888877775
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00094 Score=49.25 Aligned_cols=69 Identities=13% Similarity=0.078 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHHhCC---hhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 036287 282 APDHIMLGSLLSACKIHGK---LQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGV 350 (488)
Q Consensus 282 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 350 (488)
.+|+..+..+..++...++ .++|..+++++++.+|.++.+...++..+...|++++|...++++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3467788888888866655 69999999999999999999999999999999999999999999987643
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0018 Score=46.82 Aligned_cols=81 Identities=11% Similarity=0.071 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 036287 81 TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINM 160 (488)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 160 (488)
...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+....+.. +.+..++..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3456666666777777777777777666543 3345556666666666666666666666666553 2344444445444
Q ss_pred HHh
Q 036287 161 YSR 163 (488)
Q Consensus 161 y~~ 163 (488)
+.+
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.023 Score=59.85 Aligned_cols=45 Identities=16% Similarity=0.283 Sum_probs=23.0
Q ss_pred HHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036287 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREM 107 (488)
Q Consensus 61 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 107 (488)
..+|++++|.++.+.+. +...|..|...+.+.|+++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 44455555555544432 3345555555555555555555555544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0012 Score=52.91 Aligned_cols=86 Identities=8% Similarity=-0.145 Sum_probs=38.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 036287 87 MIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQ----LGALELGRWIHSYMGKHRIDLNHIVGGALINMYS 162 (488)
Q Consensus 87 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 162 (488)
|...|...+..++|++.|++..+.| +...+..+...|.. .++.++|..+++...+.| +...+..|..+|.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQY 104 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 3333334444444444444444432 33344444444443 444445555544444443 2333444444444
Q ss_pred h----cCCHHHHHHHHHhcc
Q 036287 163 R----CGDIDKALQVFEEMK 178 (488)
Q Consensus 163 ~----~g~~~~A~~~~~~~~ 178 (488)
. .+++++|...|++..
T Consensus 105 ~G~g~~~d~~~A~~~~~~Aa 124 (138)
T 1klx_A 105 AGKGVVKNEKQAVKTFEKAC 124 (138)
T ss_dssp HTSSSCCCHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHH
Confidence 4 445555555554433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.002 Score=49.37 Aligned_cols=76 Identities=11% Similarity=-0.053 Sum_probs=34.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036287 100 ALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEM 177 (488)
Q Consensus 100 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 177 (488)
|+..|++..+.. +.+...+..+...+...|++++|...++.+++.. +.+...+..+..+|...|++++|...|++.
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444332 2233444444444444445555544444444433 223334444455555555555555554443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.028 Score=56.53 Aligned_cols=165 Identities=9% Similarity=-0.017 Sum_probs=118.1
Q ss_pred HHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--
Q 036287 66 VENAFEVFSRVK---VKDTVCWTAMIDGLVRNGE----------MARALDLFREMQRDNVRPNEVTIVCVLSACSQLG-- 130 (488)
Q Consensus 66 ~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-- 130 (488)
-++|++.++.+. +.+..+|+.--..+...|+ ++++++.++++.+.. +-+..+|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 456677777665 3355677766666666666 788888888888764 336677777777777788
Q ss_pred chHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC-CHHHHHHHHHhccc---CCHHHHHHHHHHHHhc-----------
Q 036287 131 ALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCG-DIDKALQVFEEMKE---RDVTTYNSLIAGLAMH----------- 195 (488)
Q Consensus 131 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----------- 195 (488)
+++++.+.++.+.+.. +.+..+|+.-.-+..+.| .++++.+.++++.+ .|..+|+-....+...
T Consensus 124 ~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 124 NWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred cHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 6688888888888876 456777777777777778 88888888888876 3667888877776653
Q ss_pred ---CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 036287 196 ---GRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLV 233 (488)
Q Consensus 196 ---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 233 (488)
+.++++++.+++..... +-|...|...-..+.+.+..
T Consensus 203 ~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred ccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence 45688999998888742 33556666666666666653
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0008 Score=54.68 Aligned_cols=108 Identities=11% Similarity=0.034 Sum_probs=62.7
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 036287 92 VRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKAL 171 (488)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 171 (488)
.+.+.+++|++.+++..+.. +.+...|..+..++...++++.+....+ .+++|+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~-------------------------~~~eAi 66 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQ-------------------------MIQEAI 66 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHH-------------------------HHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHh-------------------------HHHHHH
Confidence 34455666777776666653 3355666666666665554432221110 134555
Q ss_pred HHHHhccc---CCHHHHHHHHHHHHhc-----------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036287 172 QVFEEMKE---RDVTTYNSLIAGLAMH-----------GRSIEAVEMFREMINQGIRPTKVTFVGVLNAC 227 (488)
Q Consensus 172 ~~~~~~~~---~~~~~~~~li~~~~~~-----------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 227 (488)
..|++..+ .+..+|..+..+|... |++++|++.|++..+ +.|+...|...+...
T Consensus 67 ~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 67 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 55555443 2445566666666554 478888888888888 577777776655543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0016 Score=63.07 Aligned_cols=82 Identities=9% Similarity=0.056 Sum_probs=66.4
Q ss_pred cCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHh-----cCCCCc---hhHHHHHH
Q 036287 266 VGRPEEAYDFITNM---------KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLD-----CRSADS---GTYVLLSN 327 (488)
Q Consensus 266 ~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~ 327 (488)
.|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ ++|+++ .+|+.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 56788888887764 22333 57789999999999999999999999987 455554 46888999
Q ss_pred HHhcCCChHHHHHHHHHHHh
Q 036287 328 AYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 328 ~~~~~g~~~~a~~~~~~m~~ 347 (488)
+|...|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999998765
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0024 Score=47.71 Aligned_cols=60 Identities=25% Similarity=0.272 Sum_probs=30.1
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036287 150 NHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMI 209 (488)
Q Consensus 150 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 209 (488)
+..++..+..+|.+.|++++|...|++..+ .+...|..+..+|...|++++|++.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444555555555555555555554432 233445555555555555555555555444
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0058 Score=59.16 Aligned_cols=100 Identities=12% Similarity=0.038 Sum_probs=74.8
Q ss_pred HHHHhccCCHHHHHHHHHhccccc--CcccC----hhhHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHH
Q 036287 224 LNACSHGGLVDLGFEIFQSMTRDY--GIEPQ----IEHYGCIVDLLSRVGRPEEAYDFITNM---------KIAPD-HIM 287 (488)
Q Consensus 224 l~a~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~ 287 (488)
+..+...|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444556788888888887765421 12222 467888899999999999999888876 33344 567
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHh-----cCCCCchhHH
Q 036287 288 LGSLLSACKIHGKLQLGEQIAKRLLD-----CRSADSGTYV 323 (488)
Q Consensus 288 ~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 323 (488)
++.|...|...|++++|+.+++++++ ++|+.+.+-.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 88999999999999999999999977 5787765544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.026 Score=59.51 Aligned_cols=97 Identities=19% Similarity=0.137 Sum_probs=43.6
Q ss_pred HHcCCHHHHHH-HHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHH
Q 036287 61 VEHGLVENAFE-VFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIH 139 (488)
Q Consensus 61 ~~~g~~~~A~~-~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 139 (488)
...+++++|.+ ++..++. ......++..+.+.|.+++|+++.+ +.. .-+......|+++.|.++.
T Consensus 610 ~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCCHHHHHHHH
Confidence 34556666655 4433320 1122455555555666666655431 110 0012223445555555443
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036287 140 SYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEM 177 (488)
Q Consensus 140 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 177 (488)
+.+ .+...|..|..++.+.|+++.|.++|.++
T Consensus 676 ~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 676 TDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp TTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred Hhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 211 23445555555555555555555554443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0045 Score=59.90 Aligned_cols=93 Identities=12% Similarity=-0.045 Sum_probs=71.1
Q ss_pred ccCCHHHHHHHHHhccccc--Cccc---C-hhhHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHHHHH
Q 036287 229 HGGLVDLGFEIFQSMTRDY--GIEP---Q-IEHYGCIVDLLSRVGRPEEAYDFITNM---------KIAPD-HIMLGSLL 292 (488)
Q Consensus 229 ~~g~~~~a~~~~~~~~~~~--~~~p---~-~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll 292 (488)
..|++++|..++++..+.. -+.| + ..+++.|..+|...|++++|+.++++. +..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4577888888877665321 1222 2 467889999999999999999988876 33444 57789999
Q ss_pred HHHHHhCChhHHHHHHHHHHh-----cCCCCchh
Q 036287 293 SACKIHGKLQLGEQIAKRLLD-----CRSADSGT 321 (488)
Q Consensus 293 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~ 321 (488)
..|...|++++|+.+++++++ ++|+.+.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999999999999987 46777644
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.025 Score=52.78 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHH--hcC---ChhHHHHHHHHHHHcCCCCC
Q 036287 180 RDVTTYNSLIAGLA--MHG---RSIEAVEMFREMINQGIRPT 216 (488)
Q Consensus 180 ~~~~~~~~li~~~~--~~g---~~~~A~~l~~~m~~~g~~p~ 216 (488)
.+..+|...+.+.. ..+ ...+|+.+|++..+. .|+
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~ 231 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPE 231 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCC
Confidence 46677777776643 233 347788889888884 565
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.1 Score=40.48 Aligned_cols=141 Identities=14% Similarity=0.168 Sum_probs=100.0
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHH
Q 036287 192 LAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEE 271 (488)
Q Consensus 192 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 271 (488)
+.-.|..++..++..+.... .+..-++.++.-....-+-+-..++++.+-+-+.+.+ +|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~--------------C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHh--------------hhcHHH
Confidence 34467788888888887764 2444555565555555566666677777665444433 444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCCc
Q 036287 272 AYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQ 351 (488)
Q Consensus 272 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 351 (488)
....+-.++ .+..-....+......|.-+.-.+++..++...++++.....+.++|.+.|+..+|.+++++.-++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 444444443 234445667788889999999999999987777888899999999999999999999999999999985
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0074 Score=44.50 Aligned_cols=64 Identities=13% Similarity=0.093 Sum_probs=52.6
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhH
Q 036287 259 IVDLLSRVGRPEEAYDFITNM-KIAP-DHI-MLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTY 322 (488)
Q Consensus 259 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 322 (488)
....+.+.|++++|.+.+++. ...| +.. .|..+..++...|++++|...++++++.+|.+..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 455677888999999888877 3444 466 888888899999999999999999999999887766
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0043 Score=45.84 Aligned_cols=59 Identities=20% Similarity=0.356 Sum_probs=53.9
Q ss_pred HHHHHHHhCChhHHHHHHHHHHhcCCCCch-hHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 036287 291 LLSACKIHGKLQLGEQIAKRLLDCRSADSG-TYVLLSNAYASSGKWKEAVQIRAKMKEAG 349 (488)
Q Consensus 291 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 349 (488)
....+...|++++|...++++++..|.++. .+..++.+|...|++++|.+.+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455678899999999999999999999999 99999999999999999999999987753
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.16 Score=47.33 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHH--HcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 036287 78 VKDTVCWTAMIDGLV--RNGE---MARALDLFREMQRDNVRPN-EVTIVCVLSA 125 (488)
Q Consensus 78 ~~~~~~~~~li~~~~--~~g~---~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~ 125 (488)
+.+..+|...+.+.. ..++ ..+|+.+|++..+. .|+ ...+..+.-+
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a 242 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALV 242 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 446667776665543 2233 46788888888775 344 3444433333
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.015 Score=46.73 Aligned_cols=65 Identities=8% Similarity=-0.013 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHHhC---ChhHHHHHHHHHHhcC-C-CCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 283 PDHIMLGSLLSACKIHG---KLQLGEQIAKRLLDCR-S-ADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 283 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
++..+...+..++.+.+ +.++|..+++.+.+.+ | .+...+..|.-+|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 56677777777777776 5668888888888877 5 3456777788888888888888888888766
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.25 Score=40.68 Aligned_cols=101 Identities=13% Similarity=0.184 Sum_probs=58.1
Q ss_pred HHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHH
Q 036287 60 YVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIH 139 (488)
Q Consensus 60 ~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 139 (488)
..++|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... +..+.-.|.-.|+.+.-..+-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 34566777776666655 3456777777777777777777777766532 333444445556665555554
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 036287 140 SYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEM 177 (488)
Q Consensus 140 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 177 (488)
+.....| . ++.....+.-.|+++++.++|.+.
T Consensus 84 ~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 84 NIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 4444444 1 223333444556666666666544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.12 Score=42.51 Aligned_cols=129 Identities=15% Similarity=0.146 Sum_probs=74.8
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 036287 159 NMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFE 238 (488)
Q Consensus 159 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 238 (488)
+....+|+++.|.++.+++ .+...|..+.......|+++-|.+.|.+... |..+.-.|.-.|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445677777777776665 4566777777777777777777777776543 3334444555566655544
Q ss_pred HHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 036287 239 IFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRL 311 (488)
Q Consensus 239 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 311 (488)
+-+....+ .-++.-...+.-.|+++++.+++.+.+.-|....+ ...+|-.+.|.++.+.+
T Consensus 82 la~iA~~~-------g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~------A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-------EDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAV------AKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-------TCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHH------HHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-------ccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHH------HHHcCcHHHHHHHHHHh
Confidence 43333221 12344445556677777777777776543322111 23355666666666554
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.043 Score=40.15 Aligned_cols=77 Identities=13% Similarity=0.091 Sum_probs=55.9
Q ss_pred ccChhhHHHHHHHHHhcCC---hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHH
Q 036287 250 EPQIEHYGCIVDLLSRVGR---PEEAYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVL 324 (488)
Q Consensus 250 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 324 (488)
+.++..+..+..++...++ .++|..++++. ...|+ +..+..+...+...|++++|...++++++.+|++ .....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~-~~~~~ 81 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN-LDRVT 81 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT-CCHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-ccHHH
Confidence 3456677777777765444 68888888887 45554 6777777888889999999999999999988873 34444
Q ss_pred HHH
Q 036287 325 LSN 327 (488)
Q Consensus 325 l~~ 327 (488)
+..
T Consensus 82 i~~ 84 (93)
T 3bee_A 82 IIE 84 (93)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.031 Score=50.00 Aligned_cols=87 Identities=10% Similarity=0.064 Sum_probs=70.2
Q ss_pred hHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH-----hCChhHHHHHHHHHHhcCCCC-chhHHHHHHHHhcC-CChHH
Q 036287 269 PEEAYDFITNM-KIAPD---HIMLGSLLSACKI-----HGKLQLGEQIAKRLLDCRSAD-SGTYVLLSNAYASS-GKWKE 337 (488)
Q Consensus 269 ~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 337 (488)
...|...+++. .+.|+ ...|..|...|.. -|+.++|.+.|+++++++|.. ..+++.....++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34556666655 56676 5678888888888 499999999999999999974 99999999999885 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 036287 338 AVQIRAKMKEAGVQKEPG 355 (488)
Q Consensus 338 a~~~~~~m~~~g~~~~~~ 355 (488)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998876653343
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.051 Score=40.64 Aligned_cols=72 Identities=13% Similarity=0.012 Sum_probs=52.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHH
Q 036287 253 IEHYGCIVDLLSRVGRPEEAYDFITNM-----K----IAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYV 323 (488)
Q Consensus 253 ~~~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 323 (488)
..-+-.|...+.+.|+++.|...++.. + -.+...++..|..++.+.|+++.|...++++++..|.+..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 334445666667777777777766654 1 1124677888999999999999999999999999998866544
Q ss_pred H
Q 036287 324 L 324 (488)
Q Consensus 324 ~ 324 (488)
.
T Consensus 85 n 85 (104)
T 2v5f_A 85 N 85 (104)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=2 Score=43.38 Aligned_cols=248 Identities=10% Similarity=-0.015 Sum_probs=126.5
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchH-
Q 036287 55 VMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALE- 133 (488)
Q Consensus 55 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~- 133 (488)
.-+..+.+.+++.....++.. ++.+...-.....+....|+..+|......+-..| ...+..+..++..+.+.|.+.
T Consensus 77 ~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~ 154 (618)
T 1qsa_A 77 RFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDP 154 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCH
Confidence 334455677778877776666 44455544556667777788777777777766655 334555666666666555432
Q ss_pred -HHHHHHHHHHHcCC-----------CCcH-hHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHH---HHHHHHHHHhcCC
Q 036287 134 -LGRWIHSYMGKHRI-----------DLNH-IVGGALINMYSRCGDIDKALQVFEEMKERDVTT---YNSLIAGLAMHGR 197 (488)
Q Consensus 134 -~a~~~~~~~~~~g~-----------~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~ 197 (488)
...+-+..+...|- +++. .....++..+.+-..+ ....... .++... ....+.-+.+ .+
T Consensus 155 ~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~-~~~~~~~~~~~~~~~rlar-~d 229 (618)
T 1qsa_A 155 LAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT-GATDFTRQMAAVAFASVAR-QD 229 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS-CCCHHHHHHHHHHHHHHHH-HC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc-CCChhhHHHHHHHHHHHHh-cC
Confidence 22222233333321 1111 1112222222211111 1111111 111111 1111222333 37
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHH----HHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHH
Q 036287 198 SIEAVEMFREMINQGIRPTKVTFVG----VLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAY 273 (488)
Q Consensus 198 ~~~A~~l~~~m~~~g~~p~~~t~~~----ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 273 (488)
.+.|..+|....... ..+...... +.......+...++...+...... .++.....-.+..-.+.|+++.|.
T Consensus 230 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 230 AENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHHH
Confidence 788888888876543 223322222 222333444344555555554321 233333334444445678999999
Q ss_pred HHHHhCCCCC-C-HHHHHHHHHHHHHhCChhHHHHHHHHHHh
Q 036287 274 DFITNMKIAP-D-HIMLGSLLSACKIHGKLQLGEQIAKRLLD 313 (488)
Q Consensus 274 ~~~~~m~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 313 (488)
+.|+.|+..+ + ..-..-+..+....|+.++|..+|+.+.+
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999885433 2 32233455577778999999998888875
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.95 E-value=0.077 Score=42.52 Aligned_cols=71 Identities=7% Similarity=-0.073 Sum_probs=48.3
Q ss_pred cChhhHHHHHHHHHhcC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchh
Q 036287 251 PQIEHYGCIVDLLSRVG---RPEEAYDFITNM-KIA-P--DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGT 321 (488)
Q Consensus 251 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 321 (488)
++..+.-.+.-++.+.+ ++++++.+++.. ... | +...+..|.-++.+.|++++|.+.++.+++.+|.+..+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 45555555555566655 444666666555 222 3 24556667778899999999999999999999988543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.24 Score=51.00 Aligned_cols=53 Identities=9% Similarity=0.083 Sum_probs=49.7
Q ss_pred HHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHH
Q 036287 293 SACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKM 345 (488)
Q Consensus 293 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 345 (488)
.-|...|+++.|..+.+++...-|.+..+|..|..+|...|+|+.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34677899999999999999999999999999999999999999999999987
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.49 E-value=0.19 Score=38.78 Aligned_cols=65 Identities=8% Similarity=-0.069 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHHhCChhH---HHHHHHHHHhcC-C-CCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 283 PDHIMLGSLLSACKIHGKLQL---GEQIAKRLLDCR-S-ADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 283 p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
|+..+--.+..++.+..+... ++.+++.+.+.+ | ........|+-++.+.|++++|.+..+.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444444444443333 555555555544 2 1223444555555566666666665555544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.43 E-value=0.19 Score=37.43 Aligned_cols=64 Identities=16% Similarity=0.008 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC-------CCCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 284 DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCR-------SADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 284 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
+..-+..|...+...++++.|...++.+++.. +..+..+..|+.+|.+.|+++.|...+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 45556778889999999999999999998842 33456788999999999999999999999876
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.96 Score=40.46 Aligned_cols=82 Identities=13% Similarity=0.115 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHcCCC-CcHhHHHHHHHHHHh-----cCCHHHHHHHHHhccc--C--CHHHHHHHHHHHHhc-CChhHH
Q 036287 133 ELGRWIHSYMGKHRID-LNHIVGGALINMYSR-----CGDIDKALQVFEEMKE--R--DVTTYNSLIAGLAMH-GRSIEA 201 (488)
Q Consensus 133 ~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~~-----~g~~~~A~~~~~~~~~--~--~~~~~~~li~~~~~~-g~~~~A 201 (488)
..++..++++++.... .+-..+..|...|.+ -|+.++|.+.|++..+ | ++.++......++.. |+.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 4455555555554311 024456666666666 3677777777776553 3 356666666666663 777777
Q ss_pred HHHHHHHHHcCCC
Q 036287 202 VEMFREMINQGIR 214 (488)
Q Consensus 202 ~~l~~~m~~~g~~ 214 (488)
.+.+++.+.....
T Consensus 260 ~~~L~kAL~a~p~ 272 (301)
T 3u64_A 260 DEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHCCGG
T ss_pred HHHHHHHHcCCCC
Confidence 7777777765544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.92 E-value=0.72 Score=35.79 Aligned_cols=86 Identities=13% Similarity=0.036 Sum_probs=59.3
Q ss_pred HHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHH
Q 036287 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHS 140 (488)
Q Consensus 61 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 140 (488)
..||++......+-.+.. +....+..++....+|.-++-.+++..+... .+|++.....+.+||.+.|+..++.+++.
T Consensus 72 s~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 72 DKCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp GGCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 456666666666655432 3445566677777888888877777775443 46777777778888888888888888888
Q ss_pred HHHHcCCC
Q 036287 141 YMGKHRID 148 (488)
Q Consensus 141 ~~~~~g~~ 148 (488)
++-+.|++
T Consensus 150 ~AC~kG~k 157 (172)
T 1wy6_A 150 EACKKGEK 157 (172)
T ss_dssp HHHHTTCH
T ss_pred HHHHhhhH
Confidence 87777753
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.47 E-value=0.42 Score=37.86 Aligned_cols=110 Identities=13% Similarity=0.176 Sum_probs=66.1
Q ss_pred cCCHHHHHHHHHHHHhcCCh------hHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHhcccccC
Q 036287 179 ERDVTTYNSLIAGLAMHGRS------IEAVEMFREMINQGIRPTKV----TFVGVLNACSHGGLVDLGFEIFQSMTRDYG 248 (488)
Q Consensus 179 ~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 248 (488)
..|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|..+.--|+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA-------------------- 68 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFA-------------------- 68 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHH--------------------
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHH--------------------
Confidence 45667777777777767777 6666666666654 555421 0111111110
Q ss_pred cccChhhHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHH
Q 036287 249 IEPQIEHYGCIVDLLSRVGRPEEAYDFITNM---KIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYV 323 (488)
Q Consensus 249 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 323 (488)
. +...+++++|.++|+.+ .-+- +.+|-....--.++|++..|.+++.+.+.+.|.+.....
T Consensus 69 ---------~----~~ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 69 ---------E----LKAIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp ---------H----HHHHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred ---------H----HHHhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 0 11225666666666655 1111 677777777778889999999999999998877654443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.46 E-value=3.2 Score=32.57 Aligned_cols=66 Identities=11% Similarity=-0.003 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHHHHHHhCC---hhHHHHHHHHHHhcCCCC-chhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 282 APDHIMLGSLLSACKIHGK---LQLGEQIAKRLLDCRSAD-SGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 282 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
.|+..+--.+..++.+..+ ..+++.+++.+....|.+ ......|+-+|.+.|++++|.+..+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4566665556666666654 456777888887766643 33555677788888888888888888766
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.19 E-value=1.4 Score=35.01 Aligned_cols=55 Identities=13% Similarity=-0.038 Sum_probs=44.4
Q ss_pred HhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCCc
Q 036287 297 IHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQ 351 (488)
Q Consensus 297 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 351 (488)
..+|.++|.++|+.+++....=+..|...+..-.+.|+...|.+++......+.+
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 3489999999999998864333566777777788999999999999998876654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=91.98 E-value=7 Score=41.19 Aligned_cols=248 Identities=10% Similarity=-0.020 Sum_probs=131.7
Q ss_pred HHHHcCCHHHHHHHHhhcCC----CCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC---HHH--HHHH--H
Q 036287 59 CYVEHGLVENAFEVFSRVKV----KDT--VCWTAMIDGLVRNGEMARALDLFREMQRDNV--RPN---EVT--IVCV--L 123 (488)
Q Consensus 59 ~~~~~g~~~~A~~~f~~~~~----~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~---~~t--~~~l--l 123 (488)
|....|+.++++.+++.-.. .+. ..-..+.-+.+..|..++++.++.......- .-+ ... -..+ .
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 34667888889998887654 222 2334445566677776778887777654320 001 111 1122 2
Q ss_pred HHHHhcCchHHHHHHHHHHHHcCCCCcH--hHHHHHHHHHHhcCCHHHHHHHHHhccc-CCHHH--HHHHHHHHHhcCCh
Q 036287 124 SACSQLGALELGRWIHSYMGKHRIDLNH--IVGGALINMYSRCGDIDKALQVFEEMKE-RDVTT--YNSLIAGLAMHGRS 198 (488)
Q Consensus 124 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~--~~~li~~~~~~g~~ 198 (488)
.++...++ +++...+..++...- +.. ....+|...|.-.|+-+....++..+.+ .+... .-++.-++...|+.
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 22223333 344444444443221 111 2223445556677888777777776543 22222 23334445578899
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHH---HHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHH
Q 036287 199 IEAVEMFREMINQGIRPTKVTFV---GVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDF 275 (488)
Q Consensus 199 ~~A~~l~~~m~~~g~~p~~~t~~---~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 275 (488)
+.+..+.+.+... ..|. .-|. ++.-+|+..|+.....++++.+..+ ...++.-...+.-++...|+.+.+.++
T Consensus 541 e~~~~li~~L~~~-~dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 541 ELADDLITKMLAS-DESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGHHHHHHHHHC-SCHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHHhC-CCHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 9888888888763 1222 2222 3445788899988888888888752 223333333333344456777777777
Q ss_pred HHhCCCCCCHHHHH--HHHHHHHHhCCh-hHHHHHHHHHH
Q 036287 276 ITNMKIAPDHIMLG--SLLSACKIHGKL-QLGEQIAKRLL 312 (488)
Q Consensus 276 ~~~m~~~p~~~~~~--~ll~~~~~~g~~-~~a~~~~~~~~ 312 (488)
++.+....|..+-. .+.-+....|+. ..+...+..+.
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 76552222333322 222233333333 45555666554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.91 E-value=0.46 Score=45.11 Aligned_cols=69 Identities=16% Similarity=0.077 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHh-----CCCccCCce
Q 036287 288 LGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE-----AGVQKEPGC 356 (488)
Q Consensus 288 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~ 356 (488)
...++.++...|+.+++...++.+...+|-+...|..|+.+|.+.|+..+|++.|+...+ .|+.|.+..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345667778889999999999999999999999999999999999999999999988743 488876654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=91.61 E-value=0.00013 Score=69.35 Aligned_cols=156 Identities=10% Similarity=0.115 Sum_probs=92.7
Q ss_pred CChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036287 32 GEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDN 111 (488)
Q Consensus 32 g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 111 (488)
++++.|.+.-++. +.+.+|..|..++...+++.+|++.|-+. .|+..|..+|....+.|.+++-++.+...++..
T Consensus 39 ~~ldRa~eyA~~~---n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ 113 (624)
T 3lvg_A 39 GNLDRAYEFAERC---NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA 113 (624)
T ss_dssp CCSTTTTTSSSSC---CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC
T ss_pred cccHHHHHHHHHh---CCccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 4555555443333 34668888888888888888887766443 455566777778888888888877776665542
Q ss_pred CCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc------------
Q 036287 112 VRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE------------ 179 (488)
Q Consensus 112 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~------------ 179 (488)
-.| ..=+.++-+|++.+++.+-++++. .|+..-...+.+-+...|.++.|.-+|..+..
T Consensus 114 ke~--~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~ 184 (624)
T 3lvg_A 114 RES--YVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLG 184 (624)
T ss_dssp CST--TTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCS
T ss_pred ccc--ccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 222 333456777777777654333321 23333334455555556666666555554431
Q ss_pred ------------CCHHHHHHHHHHHHhcCChhHH
Q 036287 180 ------------RDVTTYNSLIAGLAMHGRSIEA 201 (488)
Q Consensus 180 ------------~~~~~~~~li~~~~~~g~~~~A 201 (488)
.++.+|-.+-.+|...+.+.-|
T Consensus 185 ~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLA 218 (624)
T 3lvg_A 185 EYQAAVDGARKANSTRTWKEVCFACVDGKEFRLA 218 (624)
T ss_dssp GGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTT
T ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHH
Confidence 2555676666666665554443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=91.43 E-value=1 Score=34.58 Aligned_cols=72 Identities=7% Similarity=-0.058 Sum_probs=41.7
Q ss_pred cChhhHHHHHHHHHhcCChHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhH
Q 036287 251 PQIEHYGCIVDLLSRVGRPEE---AYDFITNM-KIA-P--DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTY 322 (488)
Q Consensus 251 p~~~~~~~li~~~~~~g~~~~---A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 322 (488)
|+..+--.+.-++.+.....+ ++.+++.. ... | .......|.-++.+.|+++.|.+.++.+++..|.|..+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 333333344444444444333 44444444 111 2 123344566678888999999999999999999885443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=89.82 E-value=4.4 Score=29.37 Aligned_cols=61 Identities=13% Similarity=0.100 Sum_probs=48.1
Q ss_pred HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 036287 57 INCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV 120 (488)
Q Consensus 57 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 120 (488)
++.+...|++++|..+.+.+..||.+.|-+|.. .+.|..+++..-+.++...| .|....|.
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 355678899999999999999999999988765 47888888888887887776 45555554
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=89.46 E-value=4.7 Score=29.24 Aligned_cols=61 Identities=18% Similarity=0.244 Sum_probs=47.1
Q ss_pred HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 036287 57 INCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIV 120 (488)
Q Consensus 57 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 120 (488)
++.+...|++++|..+.+.+..||.+.|-+|... +.|..+++..-+.++...| .|....|.
T Consensus 47 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 47 LSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 3556788999999999999999999999887654 6788888888777777776 45555543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.05 E-value=6.3 Score=43.16 Aligned_cols=163 Identities=9% Similarity=0.042 Sum_probs=87.4
Q ss_pred HHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHH
Q 036287 56 MINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELG 135 (488)
Q Consensus 56 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 135 (488)
++..+.+.+..+-|.++..-.+ .+..+--.+..+|...|++++|.+.|++.-. |+..+.... .....
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~----------~~~~~- 884 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF----------AVLRE- 884 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------SSHHH-
T ss_pred HHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------hhhcc-
Confidence 4444555566665555444333 2333334455666667777777777765421 221111000 00000
Q ss_pred HHHHHHHHHcC--CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc----cCCH----HHHHHHHHHHHhcCChhHHHHHH
Q 036287 136 RWIHSYMGKHR--IDLNHIVGGALINMYSRCGDIDKALQVFEEMK----ERDV----TTYNSLIAGLAMHGRSIEAVEMF 205 (488)
Q Consensus 136 ~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~g~~~~A~~l~ 205 (488)
+..+.... ...-..-|.-++..+.+.|.++.+.+.-.... ..+. ..|..+..++...|++++|...+
T Consensus 885 ---~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 885 ---FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp ---HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred ---cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 00011100 01122346667777888887777765544322 2222 25888899999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 036287 206 REMINQGIRPTKVTFVGVLNACSHGGLVDLG 236 (488)
Q Consensus 206 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 236 (488)
..+-....+ ...+..|+..++..|..+.-
T Consensus 962 ~~~pd~~~r--~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 962 MVLSTTPLK--KSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHSSSC--HHHHHHHHHHHHHHCCHHHH
T ss_pred HhCCCHHHH--HHHHHHHHHHHHhCCChhhh
Confidence 888764333 44566677766666665443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=87.98 E-value=16 Score=33.42 Aligned_cols=180 Identities=13% Similarity=0.053 Sum_probs=104.3
Q ss_pred HHHhcCCh---HHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 036287 27 LYGKCGEF---KDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDL 103 (488)
Q Consensus 27 ~y~~~g~~---~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 103 (488)
.-...|++ =+|.+. +-++..-|.+.+++++|++++-. -...+.+.|+...|-++
T Consensus 21 ~~I~~G~y~~~YEAHQ~------------~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL 77 (336)
T 3lpz_A 21 RRIAEGQPEEQYEAAQE------------TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDL 77 (336)
T ss_dssp HHHHHCCHHHHHHHHHH------------HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHH
T ss_pred HHHhCCCCccccHHHHH------------HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHH
Confidence 33456777 455554 34566678888888888887543 23345666776665554
Q ss_pred H----HHHHHCCCCCCHHHHHHHHHHHHhcCc--hHH---HHHHHHHHHHcC--CCCcHhHHHHHHHHHHhcCCHHHHHH
Q 036287 104 F----REMQRDNVRPNEVTIVCVLSACSQLGA--LEL---GRWIHSYMGKHR--IDLNHIVGGALINMYSRCGDIDKALQ 172 (488)
Q Consensus 104 ~----~~m~~~g~~p~~~t~~~ll~~~~~~~~--~~~---a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~ 172 (488)
- +-+.+.++++|..+...++..+..... .+. ..+...+-.+.| ..-|+.....+...|.+.+++.+|+.
T Consensus 78 ~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~ 157 (336)
T 3lpz_A 78 AVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEK 157 (336)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 4 444556788888877777777665543 221 122223333333 33467788889999999999999999
Q ss_pred HHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcc
Q 036287 173 VFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMT 244 (488)
Q Consensus 173 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 244 (488)
.|---.++++..+..|+.-+...+...++ |...-.+++. |.-.+++..|..+++...
T Consensus 158 H~ilg~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfiaRaVL~-yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 158 HLVLGTKESPEVLARMEYEWYKQDESHTA--------------PLYCARAVLP-YLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHTTSCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHHHHHHH-HHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHhcCCccH--------------HHHHHHHHHH-HHHhCCHHHHHHHHHHHH
Confidence 88532222335665555444444332221 1122222332 444567777776655544
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=87.84 E-value=3.3 Score=32.01 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCCCC-chhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 303 LGEQIAKRLLDCRSAD-SGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 303 ~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
+++.+++.+.+.+|.. ......|+-++.+.|++++|.+..+.+.+
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4555555555544422 23344455555555555555555555543
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=87.22 E-value=15 Score=34.54 Aligned_cols=128 Identities=12% Similarity=-0.006 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHcC--C--CCcHhHHHHHHHHHHhcC-CHHHHHHHHHhccc---CCHHHH---
Q 036287 117 VTIVCVLSACSQLGALELGRWIHSYMGKHR--I--DLNHIVGGALINMYSRCG-DIDKALQVFEEMKE---RDVTTY--- 185 (488)
Q Consensus 117 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~~---~~~~~~--- 185 (488)
.....+...|.+.|+.++..+++......- + .....+...|++.+.... ..+.-.++..+..+ .+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666655443210 0 011223345555555432 22222222222221 111112
Q ss_pred ---HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-----HHHHHHHHHhccCCHHHHHHHHHhcc
Q 036287 186 ---NSLIAGLAMHGRSIEAVEMFREMINQGIRPTKV-----TFVGVLNACSHGGLVDLGFEIFQSMT 244 (488)
Q Consensus 186 ---~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-----t~~~ll~a~~~~g~~~~a~~~~~~~~ 244 (488)
.-++..|...|++.+|.+++.++.+.=-+.|.. .+..-+..|...+++.++...+....
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 134555666666666666666665431111111 12222334445555555555555443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.70 E-value=19 Score=34.53 Aligned_cols=185 Identities=10% Similarity=0.110 Sum_probs=118.2
Q ss_pred CCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHc-CCCCcHhH--HHHHHHHHHhcCC
Q 036287 95 GEMARALDLFREMQR-----DNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKH-RIDLNHIV--GGALINMYSRCGD 166 (488)
Q Consensus 95 g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~--~~~li~~y~~~g~ 166 (488)
|++++|++.+..+.+ .+..........++..|...++++...+.+..+.+. |..+...+ .+.+++.......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 789999988866654 234456777888999999999999988877766543 43222211 1222232222332
Q ss_pred HH--HHHHHHHhccc---C-------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhc
Q 036287 167 ID--KALQVFEEMKE---R-------DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTK-----VTFVGVLNACSH 229 (488)
Q Consensus 167 ~~--~A~~~~~~~~~---~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~ 229 (488)
.+ .-..+.+.... . .......|...|...|++.+|.+++..+...-...+. ..+...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 22 22333333322 1 1123456778899999999999999998753222222 345566778999
Q ss_pred cCCHHHHHHHHHhcccc-cCc--ccC--hhhHHHHHHHHHhcCChHHHHHHHHhC
Q 036287 230 GGLVDLGFEIFQSMTRD-YGI--EPQ--IEHYGCIVDLLSRVGRPEEAYDFITNM 279 (488)
Q Consensus 230 ~g~~~~a~~~~~~~~~~-~~~--~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 279 (488)
.+++.+|..++.++... ... .|+ ...|.+++..+...+++.+|.+.|.+.
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999887531 111 222 356678888888899999988876654
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.51 E-value=2 Score=31.33 Aligned_cols=63 Identities=14% Similarity=0.239 Sum_probs=44.7
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHH
Q 036287 197 RSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVD 261 (488)
Q Consensus 197 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 261 (488)
+.-+..+-++.+....+.|+.....+.|.||.+.+++..|.++|+.+..+ ..+....|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 44566666777777777888888888888888888888888888887753 3333445666554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=85.20 E-value=5.1 Score=29.20 Aligned_cols=49 Identities=14% Similarity=0.285 Sum_probs=36.7
Q ss_pred hCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHH
Q 036287 278 NMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLS 326 (488)
Q Consensus 278 ~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 326 (488)
.+.+-|++.+..+.+.||++.+++..|.++++-+...-.+....|..++
T Consensus 38 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 38 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 3467788999999999999999999999999888764333334566554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=85.15 E-value=41 Score=35.50 Aligned_cols=263 Identities=10% Similarity=0.052 Sum_probs=146.3
Q ss_pred HHhcCChHHHHHHHhhCCCC---Ccee--eHHHHHHHHHHcCCHHHHHHHHhhcC-CCC----------HHHHHHHHHHH
Q 036287 28 YGKCGEFKDAMQLFDEMPEC---NDVV--ASTVMINCYVEHGLVENAFEVFSRVK-VKD----------TVCWTAMIDGL 91 (488)
Q Consensus 28 y~~~g~~~~A~~~~~~m~~~---~~~~--~~~~li~~~~~~g~~~~A~~~f~~~~-~~~----------~~~~~~li~~~ 91 (488)
....|+.+++..+++.-... ++.. .-..+.-+...+|..+++..++.... .++ +..-.+|.-+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 34567888888888876652 2222 22333445566776667777665533 222 12223344444
Q ss_pred HHcCC-HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHH
Q 036287 92 VRNGE-MARALDLFREMQRDNVRPNE--VTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDID 168 (488)
Q Consensus 92 ~~~g~-~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 168 (488)
+-.|. -+++.+.+..+.... .+.. ..-.++...+...|+.+....++..+.+.. ..++.-..++.-+..-.|+.+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGG
T ss_pred HhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChH
Confidence 44443 346677777766542 1111 111223334556788888888888877642 222222223333344678888
Q ss_pred HHHHHHHhccc-CCHH-HHH---HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhc
Q 036287 169 KALQVFEEMKE-RDVT-TYN---SLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSM 243 (488)
Q Consensus 169 ~A~~~~~~~~~-~~~~-~~~---~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 243 (488)
.+..+.+.+.. .|.. -|. ++.-+|+..|+.....+++..+... ...+......+.-++...|+.+.+.+++..+
T Consensus 542 ~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L 620 (963)
T 4ady_A 542 LADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLL 620 (963)
T ss_dssp GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 88877777663 3433 333 3345677888887777788888864 2222222222223344466667777777776
Q ss_pred ccccCcccChhhHHHHHHHHHhcCCh-HHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036287 244 TRDYGIEPQIEHYGCIVDLLSRVGRP-EEAYDFITNMKIAPDHIMLGSLLSAC 295 (488)
Q Consensus 244 ~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~p~~~~~~~ll~~~ 295 (488)
.+ ...|.+..-.++.-+....|.. .+|.+++..+...+|..+-..-+.++
T Consensus 621 ~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 621 SK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIAL 671 (963)
T ss_dssp GG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred Hh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 64 2356665555565566666664 57888888885556655544444444
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=85.13 E-value=22 Score=32.40 Aligned_cols=167 Identities=12% Similarity=0.061 Sum_probs=101.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHH----HHHHHcCCCCCHHHHHHHHHHHhc
Q 036287 154 GGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMF----REMINQGIRPTKVTFVGVLNACSH 229 (488)
Q Consensus 154 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~a~~~ 229 (488)
+.++..=|.+.+++++|.+++-.- ...+.++|+...|-++- +-..+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 445666688899999998876442 23455667665555544 445567788888877777777665
Q ss_pred cCCHHHH-HHHHHhccc---ccC--cccChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhH
Q 036287 230 GGLVDLG-FEIFQSMTR---DYG--IEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQL 303 (488)
Q Consensus 230 ~g~~~~a-~~~~~~~~~---~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~ 303 (488)
...-+-. ..+.+.+.+ ++| -.-|+.....+...|.+.+++.+|...|- .+..+.+..+..++..+...+...+
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCCcc
Confidence 4431111 112222211 112 22356677788899999999999998874 3444445677666666555443222
Q ss_pred HHHHHHHHHhcCCCCchhHH-HHHHHHhcCCChHHHHHHHHHHHh
Q 036287 304 GEQIAKRLLDCRSADSGTYV-LLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 304 a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
+ ..|. ..+--|.-.++...|..+++...+
T Consensus 186 ~---------------dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 A---------------PLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp H---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred H---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2 2222 234456777899999988877664
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=84.96 E-value=4.6 Score=38.10 Aligned_cols=69 Identities=10% Similarity=0.138 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhccc----ccCcccChhh
Q 036287 186 NSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTR----DYGIEPQIEH 255 (488)
Q Consensus 186 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 255 (488)
..++..+...|++.+|+..+..+... -+-++..+..++.++...|+..+|++.|+.+.+ +.|+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34555666677777777777766654 244666677777777777777777777666543 2355555443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=84.47 E-value=0.005 Score=58.81 Aligned_cols=234 Identities=12% Similarity=0.070 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 036287 81 TVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINM 160 (488)
Q Consensus 81 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 160 (488)
...|..|..++...++..+|++.|- +. -|+..|..++.++.+.|.++.-..++....+..- ++.+-+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHH
Confidence 4568899999999999999988762 22 2566788999999999999999999888877643 34455689999
Q ss_pred HHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 036287 161 YSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIF 240 (488)
Q Consensus 161 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 240 (488)
|++.|++.+-++.+. .+|+.-.....+-+...|.++.|.-+|..+-. |..|...+.+.|++..|.+.-
T Consensus 126 yAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AVdaA 193 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGA 193 (624)
T ss_dssp HHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSSTTTT
T ss_pred HHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHHHHH
Confidence 999998765443322 35665566677778888888888777765322 334555667777776665432
Q ss_pred HhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCch
Q 036287 241 QSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSG 320 (488)
Q Consensus 241 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 320 (488)
++ .-++.+|-.+-.+|...+.+.-|.-.--.+-+.|| -...++.-|-..|-+++-+.+++..+.+.....+
T Consensus 194 rK-------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvhad--eL~elv~~YE~~G~f~ELIsLlEaglglErAHmG 264 (624)
T 3lvg_A 194 RK-------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD--ELEELINYYQDRGYFEELITMLEAALGLERAHMG 264 (624)
T ss_dssp TT-------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHH
T ss_pred Hh-------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHH
Confidence 22 34577888888899998888766443332212221 1123445577888899999999999888877888
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHH
Q 036287 321 TYVLLSNAYASSGKWKEAVQIRAK 344 (488)
Q Consensus 321 ~~~~l~~~~~~~g~~~~a~~~~~~ 344 (488)
.|.-|+-.|++- +.++..+.++.
T Consensus 265 mFTELaILYsKY-~PeKlmEHlkl 287 (624)
T 3lvg_A 265 MFTELAILYSKF-KPQKMREHLEL 287 (624)
T ss_dssp HHHHHHHHHHSS-CTTHHHHHHTT
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHH
Confidence 999999888887 44555554443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.12 E-value=13 Score=30.04 Aligned_cols=122 Identities=11% Similarity=0.044 Sum_probs=69.5
Q ss_pred eeeHHHHHHHHHHcCCHHHHHHHHhhcC-----CCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC
Q 036287 50 VVASTVMINCYVEHGLVENAFEVFSRVK-----VKDT-------VCWTAMIDGLVRNGEMARALDLFREMQRD--NVRPN 115 (488)
Q Consensus 50 ~~~~~~li~~~~~~g~~~~A~~~f~~~~-----~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~ 115 (488)
..++-.-+..+...|.++.|+-+.+.+. .+++ .+...+..++...|++.+|...|++.++. .+.-+
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 4445555777788888888887776643 2332 25566777888888888888888886432 11111
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc--CCHHH
Q 036287 116 EVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE--RDVTT 184 (488)
Q Consensus 116 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~ 184 (488)
..+..++-. ...... ......+..+---+..+|.+.|+.++|+.+++.++. ++...
T Consensus 100 ~s~~~~~~~---~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kv 157 (167)
T 3ffl_A 100 SKVRPSTGN---SASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKI 157 (167)
T ss_dssp ------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHH
T ss_pred CCccccccc---cCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHH
Confidence 111111100 000000 011234556666688899999999999999998864 44443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.78 E-value=11 Score=38.77 Aligned_cols=50 Identities=10% Similarity=-0.025 Sum_probs=30.1
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHhc
Q 036287 192 LAMHGRSIEAVEMFREMINQGIRPT-KVTFVGVLNACSHGGLVDLGFEIFQSM 243 (488)
Q Consensus 192 ~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~ 243 (488)
+...|+++-|+++-++.... .|+ -.||..|..+|...|+++.|+-.++.+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44556666666666666553 333 445666666666666666666666655
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=82.71 E-value=29 Score=37.90 Aligned_cols=166 Identities=11% Similarity=0.062 Sum_probs=104.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCCH
Q 036287 21 RLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVK---DTVCWTAMIDGLVRNGEM 97 (488)
Q Consensus 21 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~ 97 (488)
...++..+.+.+..+.|.++....+..+ ..--.+..+|..+|++++|.+.|.+.... +... ....
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~~~--~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l----------~~~~ 882 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNSDP--IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQ----------FAVL 882 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCCCH--HHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCS----------CSSH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccCCc--HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchh----------hhhh
Confidence 4456777778899998988877665533 33345567789999999999999886421 1000 0000
Q ss_pred HHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCc----HhHHHHHHHHHHhcCCHHHHH
Q 036287 98 ARALDLFREMQRDN--VRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLN----HIVGGALINMYSRCGDIDKAL 171 (488)
Q Consensus 98 ~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~ 171 (488)
.. +..+.... ...-..-|.-++..+.+.+.++.+.++-..+++...+.+ ...|..+.+.+...|++++|.
T Consensus 883 ~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 883 RE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp HH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred cc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 00 11111110 111234466677777777777777777666665432222 225777888889999999999
Q ss_pred HHHHhcccC--CHHHHHHHHHHHHhcCChhHHH
Q 036287 172 QVFEEMKER--DVTTYNSLIAGLAMHGRSIEAV 202 (488)
Q Consensus 172 ~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~ 202 (488)
..+-.++.. -......++...+..|+.+.-+
T Consensus 959 ~aL~~~pd~~~r~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 959 VALMVLSTTPLKKSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp HHHHHHHHSSSCHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhCCChhhhh
Confidence 888877653 3456777888888887765433
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.66 E-value=4.4 Score=32.68 Aligned_cols=112 Identities=8% Similarity=-0.002 Sum_probs=59.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhccc-----CCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHH-HHHH
Q 036287 157 LINMYSRCGDIDKALQVFEEMKE-----RDV-------TTYNSLIAGLAMHGRSIEAVEMFREMINQG-IRPTKV-TFVG 222 (488)
Q Consensus 157 li~~y~~~g~~~~A~~~~~~~~~-----~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~-t~~~ 222 (488)
=+......|.++.|+-+.+.+.. +++ .+...+.+++...|++..|...|++.++.. .-|... +...
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 35566677888888777665432 332 245566777888888888888888865421 111111 1111
Q ss_pred HHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 036287 223 VLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIA 282 (488)
Q Consensus 223 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 282 (488)
+-. ...... .....++.+.---+..+|.+.+++++|+.+++.+|.+
T Consensus 106 ~~~----~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 106 TGN----SASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred ccc----cCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 100 000000 0012233444445677788888888888888887533
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=81.17 E-value=13 Score=26.89 Aligned_cols=87 Identities=11% Similarity=0.053 Sum_probs=60.0
Q ss_pred CchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036287 130 GALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMI 209 (488)
Q Consensus 130 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 209 (488)
..-++|.-|-+.+...+- ...+--.-+......|++++|..+.+.+.-||...|-++-. .+.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 346777777777766653 33333333455677899999999999888899999987755 46788888877777777
Q ss_pred HcCCCCCHHHHH
Q 036287 210 NQGIRPTKVTFV 221 (488)
Q Consensus 210 ~~g~~p~~~t~~ 221 (488)
.+| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 665 44444443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=80.19 E-value=15 Score=26.74 Aligned_cols=87 Identities=17% Similarity=0.124 Sum_probs=58.5
Q ss_pred CchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036287 130 GALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMI 209 (488)
Q Consensus 130 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 209 (488)
..-++|.-|-+.+...+- ...+--.-+......|++++|..+.+.+.-||...|-++-. .+.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 346777777777766653 33333333455677899999999998888899999887755 45677777777776776
Q ss_pred HcCCCCCHHHHH
Q 036287 210 NQGIRPTKVTFV 221 (488)
Q Consensus 210 ~~g~~p~~~t~~ 221 (488)
.+| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 654 44444443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 488 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-06 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.2 bits (108), Expect = 5e-06
Identities = 48/333 (14%), Positives = 101/333 (30%), Gaps = 13/333 (3%)
Query: 17 NRSTRLKLVELYGKCGEFKDAMQLFDEMPECN--DVVASTVMINCYVEHGLVENAFEVFS 74
N L L ++ +C + + N A + + N Y E G ++ A E +
Sbjct: 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYR 91
Query: 75 RVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALEL 134
I+ + ++ V L
Sbjct: 92 HALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRL 151
Query: 135 GRWIHSYMGKHRIDLNH-IVGGALINMYSRCGDIDKALQVFE---EMKERDVTTYNSLIA 190
Y+ N + L +++ G+I A+ FE + + Y +L
Sbjct: 152 EEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGN 211
Query: 191 GLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIE 250
L AV + ++ + GL+DL + ++ ++
Sbjct: 212 VLKEARIFDRAVAAYLRALSLSPNHAV-VHGNLACVYYEQGLIDLAIDTYRRAIE---LQ 267
Query: 251 PQI-EHYGCIVDLLSRVGRPEEAYDFITN--MKIAPDHIMLGSLLSACKIHGKLQLGEQI 307
P + Y + + L G EA D L +L + + G ++ ++
Sbjct: 268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL 327
Query: 308 AKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQ 340
++ L+ + + L++ GK +EA+
Sbjct: 328 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 488 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.6 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.6 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.25 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.22 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.19 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.13 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.12 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.09 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.09 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.02 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.0 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.96 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.61 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.59 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.58 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.56 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.51 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.47 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.41 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.41 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.39 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.35 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.34 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.32 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.3 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.24 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.13 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.12 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.08 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.06 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.04 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.99 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.98 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.93 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.89 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.88 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.86 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.79 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.77 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.75 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.73 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.68 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.66 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.5 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.35 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.34 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.23 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.22 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.2 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.02 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.79 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.69 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.47 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.95 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.45 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.06 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.14 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 91.42 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 88.98 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 87.56 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.47 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 84.33 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.2e-20 Score=180.03 Aligned_cols=318 Identities=14% Similarity=0.118 Sum_probs=251.9
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHH
Q 036287 24 LVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEMA 98 (488)
Q Consensus 24 li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~ 98 (488)
+...+.+.|++++|.+.|+++.+ |+++.+|..+...|.+.|++++|...|++.. +.+..+|..+...|.+.|+++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence 45667788888888888888754 4457788888888888888888888888764 335678888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHH----------------------------------HHHhcCchHHHHHHHHHHHH
Q 036287 99 RALDLFREMQRDNVRPNEVTIVCVLS----------------------------------ACSQLGALELGRWIHSYMGK 144 (488)
Q Consensus 99 ~A~~~~~~m~~~g~~p~~~t~~~ll~----------------------------------~~~~~~~~~~a~~~~~~~~~ 144 (488)
+|+..+....... +.+......... .....+....+...+.....
T Consensus 85 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred ccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhc
Confidence 8888888877653 222222222222 22233333444444444444
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 036287 145 HRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFV 221 (488)
Q Consensus 145 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 221 (488)
.. +.+...+..+...+...|++++|...+++..+ .+..+|..+...+...|++++|+..|++....+ +.+...+.
T Consensus 164 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 241 (388)
T d1w3ba_ 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHH
Confidence 33 34566778888999999999999999987654 466789999999999999999999999998863 44566777
Q ss_pred HHHHHHhccCCHHHHHHHHHhcccccCccc-ChhhHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHh
Q 036287 222 GVLNACSHGGLVDLGFEIFQSMTRDYGIEP-QIEHYGCIVDLLSRVGRPEEAYDFITNM--KIAPDHIMLGSLLSACKIH 298 (488)
Q Consensus 222 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~ 298 (488)
.+..++...|++++|...|+.+.+ +.| +...+..+...|...|++++|.+.++.. ..+.+...+..+...+...
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHC
Confidence 788899999999999999999874 244 4678889999999999999999999887 3344678889999999999
Q ss_pred CChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 299 GKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 299 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
|++++|...++++++..|.++.++..++.+|...|++++|.+.+++..+
T Consensus 319 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998865
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=4.2e-20 Score=176.20 Aligned_cols=327 Identities=14% Similarity=0.082 Sum_probs=270.3
Q ss_pred HhHHHHHHHHhCCCCchhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcCC-
Q 036287 2 GREIHGQVLKLGLRSNRSTRLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVKV- 78 (488)
Q Consensus 2 ~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~- 78 (488)
|.+++..+++.. +-++.++..+...|.+.|++++|...|++..+ +++..+|..+...|.+.|++++|...+.....
T Consensus 18 A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~ 96 (388)
T d1w3ba_ 18 AERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL 96 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccccccccccc
Confidence 566777777764 34677889999999999999999999998765 44678999999999999999999999987641
Q ss_pred --CCHH----------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036287 79 --KDTV----------------------------------CWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCV 122 (488)
Q Consensus 79 --~~~~----------------------------------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 122 (488)
.+.. .+..........+....+...+.+..... +-+...+..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l 175 (388)
T d1w3ba_ 97 KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNL 175 (388)
T ss_dssp CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhh
Confidence 1111 22233334445556666666666666543 3456777788
Q ss_pred HHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChh
Q 036287 123 LSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSI 199 (488)
Q Consensus 123 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 199 (488)
...+...++.+.|...+...++.. +.+..++..+...|...|++++|...|++... .+...+..+...+.+.|+++
T Consensus 176 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 254 (388)
T d1w3ba_ 176 GCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLID 254 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred cccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHH
Confidence 888999999999999999998875 45677889999999999999999999988764 56678888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC
Q 036287 200 EAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM 279 (488)
Q Consensus 200 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 279 (488)
+|+..|++..+.. +-+..++..+..++...|++++|.+.+..... ..+.+...+..+...|.+.|++++|++.+++.
T Consensus 255 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 331 (388)
T d1w3ba_ 255 LAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKA 331 (388)
T ss_dssp HHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999998852 33466788889999999999999999999875 34556788889999999999999999999986
Q ss_pred -CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCC
Q 036287 280 -KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGK 334 (488)
Q Consensus 280 -~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 334 (488)
...|+ ..+|..+...+...|++++|...++++++++|.++.+|..|+.+|.+.||
T Consensus 332 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 332 LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 66665 77899999999999999999999999999999999999999999988875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=5.1e-14 Score=130.62 Aligned_cols=240 Identities=13% Similarity=0.018 Sum_probs=171.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 036287 86 AMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCG 165 (488)
Q Consensus 86 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 165 (488)
.....+.+.|++++|+..|+++.+.. |-+..+|..+..++...|+++.|...+..+++.. +.+...+..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 45667788888888888888888764 3356777788888888888888888888887765 345667777777788888
Q ss_pred CHHHHHHHHHhcccCCHH---HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHh
Q 036287 166 DIDKALQVFEEMKERDVT---TYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQS 242 (488)
Q Consensus 166 ~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 242 (488)
++++|.+.+++....+.. .+........ ..+.......+..+...+..+++...+..
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 888887777765432110 0000000000 00000011111222333456667777776
Q ss_pred cccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCch
Q 036287 243 MTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSG 320 (488)
Q Consensus 243 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 320 (488)
..+...-.++..++..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++.+|.++.
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 6543233345667888888999999999999999887 4444 4788999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 321 TYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 321 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
++..++.+|.+.|++++|.+.|++..+
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999999998876
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=8.2e-14 Score=129.21 Aligned_cols=267 Identities=12% Similarity=0.043 Sum_probs=190.4
Q ss_pred eeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036287 51 VASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACS 127 (488)
Q Consensus 51 ~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 127 (488)
..+-.....+.+.|++++|...|++.. +.+..+|..+...|...|++++|+..|.+..+.. +-+...+..+...+.
T Consensus 20 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 98 (323)
T d1fcha_ 20 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 98 (323)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccc
Confidence 334456777899999999999999875 3467899999999999999999999999998854 346778888899999
Q ss_pred hcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 036287 128 QLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFRE 207 (488)
Q Consensus 128 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 207 (488)
..|++++|.+.+..+....... ........... . ..+.......+..+...+...+|.+.|.+
T Consensus 99 ~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 99 NESLQRQACEILRDWLRYTPAY-AHLVTPAEEGA-G---------------GAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTT-GGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchhhHHHhccch-HHHHHhhhhhh-h---------------hcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999988764221 11100000000 0 00111111122233445567778888887
Q ss_pred HHHcCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-
Q 036287 208 MINQGI-RPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP- 283 (488)
Q Consensus 208 m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p- 283 (488)
..+... .++...+..+...+...|++++|...|+..... .|+ ...|..+...|.+.|++++|.+.+++. ...|
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 238 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 238 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc---ccccccchhhhhhcccccccchhHHHHHHHHHHHhhc
Confidence 776432 234566777778888899999999999888742 344 677888899999999999999999887 4555
Q ss_pred CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchh-----------HHHHHHHHhcCCChHHH
Q 036287 284 DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGT-----------YVLLSNAYASSGKWKEA 338 (488)
Q Consensus 284 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~a 338 (488)
+..+|..+..+|...|++++|...|++++++.|.+... +..+..++...|+.+.+
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~ 304 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 304 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 47789999999999999999999999999987766543 33445555555555444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=1.7e-09 Score=100.17 Aligned_cols=261 Identities=13% Similarity=-0.002 Sum_probs=171.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCchHHHHHHHHHHHHcCC--C---CcHhHHHHH
Q 036287 87 MIDGLVRNGEMARALDLFREMQRDNVRPN----EVTIVCVLSACSQLGALELGRWIHSYMGKHRI--D---LNHIVGGAL 157 (488)
Q Consensus 87 li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~---~~~~~~~~l 157 (488)
....+...|++++|+++|++..+.....+ ...+..+..++...|++++|...+..+.+... . .....+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 44556677778888877777766421111 13455566677777778777777777654311 1 112344556
Q ss_pred HHHHHhcCCHHHHHHHHHhccc-------C----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC----CCCHHHHHH
Q 036287 158 INMYSRCGDIDKALQVFEEMKE-------R----DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGI----RPTKVTFVG 222 (488)
Q Consensus 158 i~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~t~~~ 222 (488)
...|...|++..|...+.+... + ....+..+...+...|+++.+...+.+...... .....++..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 6777788888888777765432 1 113455566777888888888888887775321 122334444
Q ss_pred HHHHHhccCCHHHHHHHHHhcccccCc----cc-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-----CHHHHHHH
Q 036287 223 VLNACSHGGLVDLGFEIFQSMTRDYGI----EP-QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-----DHIMLGSL 291 (488)
Q Consensus 223 ll~a~~~~g~~~~a~~~~~~~~~~~~~----~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-----~~~~~~~l 291 (488)
....+...+....+...+........- .+ ....+..+...+...|++++|...++.. ...| ....+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 555666777777777666554432111 11 1334566677788889999999998876 2222 24556677
Q ss_pred HHHHHHhCChhHHHHHHHHHHhc------CCCCchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 292 LSACKIHGKLQLGEQIAKRLLDC------RSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 292 l~~~~~~g~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
..++...|+++.|...+++++.. .|....++..++.+|...|++++|.+.+++..+
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88889999999999999988752 244556788899999999999999999988754
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.22 E-value=1.6e-09 Score=98.95 Aligned_cols=217 Identities=10% Similarity=0.026 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--------------hcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 036287 98 ARALDLFREMQRDNVRPNEVTIVCVLSACS--------------QLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSR 163 (488)
Q Consensus 98 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--------------~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 163 (488)
+.+..+|++++.. ++-++..|...+.-+. ..+..+.+..+++..++...+.+...+...+..+.+
T Consensus 33 ~Rv~~vyerAl~~-~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 4455666666654 2334454444333221 223457888899988877666677788888899999
Q ss_pred cCCHHHHHHHHHhccc---CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH-HHhccCCHHHHHH
Q 036287 164 CGDIDKALQVFEEMKE---RD-VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLN-ACSHGGLVDLGFE 238 (488)
Q Consensus 164 ~g~~~~A~~~~~~~~~---~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~ 238 (488)
.|+++.|..+|+++.+ .+ ...|...+....+.|+.++|.++|+++.+.+.. +...|..... -+...|+.+.|..
T Consensus 112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~ 190 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHH
Confidence 9999999999998764 23 347889999999999999999999999876432 3333333332 2445688999999
Q ss_pred HHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 036287 239 IFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM----KIAPD--HIMLGSLLSACKIHGKLQLGEQIAKRLL 312 (488)
Q Consensus 239 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 312 (488)
+|+.+.+. .+.+...+...++.+.+.|+++.|..+|++. +..|+ ...|...+.--..+|+.+.+.++.+++.
T Consensus 191 i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99998853 3445678888899999999999999999886 34443 5678888888888899999999999988
Q ss_pred hcCCCC
Q 036287 313 DCRSAD 318 (488)
Q Consensus 313 ~~~p~~ 318 (488)
+..|..
T Consensus 269 ~~~~~~ 274 (308)
T d2onda1 269 TAFREE 274 (308)
T ss_dssp HHTTTT
T ss_pred HHCccc
Confidence 877655
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=1.1e-08 Score=94.43 Aligned_cols=258 Identities=11% Similarity=0.004 Sum_probs=156.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCchHHHHHHHHHHHHc----CCCC---c
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRDNV-RPN----EVTIVCVLSACSQLGALELGRWIHSYMGKH----RIDL---N 150 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~---~ 150 (488)
+++.+...|...|++++|+..|++..+... .++ ..++..+...+...|++..+...+...... +.+. .
T Consensus 53 a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~ 132 (366)
T d1hz4a_ 53 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 132 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHH
Confidence 455566666666777777666666543210 011 123344455566667777666666555431 1111 1
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccc--------CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCC----
Q 036287 151 HIVGGALINMYSRCGDIDKALQVFEEMKE--------RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQ--GIRPT---- 216 (488)
Q Consensus 151 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~---- 216 (488)
...+..+...|...|+++.|...+..... ....++..+...+...++..++...+.+.... .....
T Consensus 133 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~ 212 (366)
T d1hz4a_ 133 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 212 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchH
Confidence 23445566777777888888777766542 12345555666677778888888777766542 11111
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHhcccccCccc--ChhhHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HH
Q 036287 217 KVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEP--QIEHYGCIVDLLSRVGRPEEAYDFITNM-------KIAPD-HI 286 (488)
Q Consensus 217 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~ 286 (488)
...+..+...+...|++++|...+....+...-.+ ....+..+...|...|++++|.+.+++. +..|+ ..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 292 (366)
T d1hz4a_ 213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 292 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHH
Confidence 12344455567778889999888887764321111 1344556788888899999998888765 33343 45
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhcCCC---------CchhHHHHHHHHhcCCChHHHHH
Q 036287 287 MLGSLLSACKIHGKLQLGEQIAKRLLDCRSA---------DSGTYVLLSNAYASSGKWKEAVQ 340 (488)
Q Consensus 287 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~a~~ 340 (488)
.+..+...+...|++++|...+++++++.+. ....+..++..+...++.+++.+
T Consensus 293 ~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 293 NLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 6777888899999999999999998875421 11233345555666666666554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=4.3e-10 Score=99.88 Aligned_cols=200 Identities=14% Similarity=-0.054 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHh
Q 036287 118 TIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAM 194 (488)
Q Consensus 118 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 194 (488)
++..+..++.+.|++++|...|...++.. +.+..+++.+..+|.+.|++++|.+.|+++.+ .+..+|..+...|..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence 34444455555555555555555555543 33455556666666666666666666665543 234456666666666
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCC----hH
Q 036287 195 HGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGR----PE 270 (488)
Q Consensus 195 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----~~ 270 (488)
.|++++|+..|++..+.. +.+......+..++...+..+....+...... ..++...++ ++..+..... .+
T Consensus 118 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cchhhhhhh-HHHHHHHHHHHHHHHH
Confidence 666666666666666532 22222222222333333433333333333221 112211221 1222211111 11
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHH
Q 036287 271 EAYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYV 323 (488)
Q Consensus 271 ~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 323 (488)
.+...+... ...|+ ..+|..+...+...|++++|...++++++.+|.+...|.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 111111111 11222 346677888888999999999999999999888765544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.12 E-value=2.6e-10 Score=105.69 Aligned_cols=257 Identities=10% Similarity=-0.063 Sum_probs=179.0
Q ss_pred CHHHHHHHHhhcC--CC-CHHHHHHHHHH----------HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-
Q 036287 65 LVENAFEVFSRVK--VK-DTVCWTAMIDG----------LVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLG- 130 (488)
Q Consensus 65 ~~~~A~~~f~~~~--~~-~~~~~~~li~~----------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~- 130 (488)
..++|++++++.. .| +...|+..-.. +...|++++|+.++++..+.. +-+...+..+..++...+
T Consensus 44 ~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~ 122 (334)
T d1dcea1 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (334)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhcc
Confidence 3467777776654 33 34455443322 333455788888888888754 335666666666666655
Q ss_pred -chHHHHHHHHHHHHcCCCCcHhHH-HHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHH
Q 036287 131 -ALELGRWIHSYMGKHRIDLNHIVG-GALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMF 205 (488)
Q Consensus 131 -~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 205 (488)
+.+++...+..+.+.. +++...+ ..+...+...|..++|...++.+.+ .+..+|+.+...+.+.|++++|...+
T Consensus 123 ~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~ 201 (334)
T d1dcea1 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (334)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred ccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 4788888888888875 3344444 3455777888999999999988775 46788999999999999988887666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 036287 206 REMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD 284 (488)
Q Consensus 206 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 284 (488)
++..+. .|+.. .+...+...+..+++...+..... .-+++...+..+...+...|+.++|.+.+.+. ...|+
T Consensus 202 ~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 274 (334)
T d1dcea1 202 RLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLL--GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKW 274 (334)
T ss_dssp SSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHH--SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHH--hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch
Confidence 654442 22222 222334445566667777766653 22444556667777888889999999988876 55564
Q ss_pred -HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 036287 285 -HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYA 330 (488)
Q Consensus 285 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 330 (488)
..+|..+...+...|+.++|.+.++++++++|.+...|..|...+.
T Consensus 275 ~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 275 CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence 6778888889999999999999999999999988777777766554
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=3.4e-09 Score=97.04 Aligned_cols=125 Identities=11% Similarity=0.018 Sum_probs=51.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 036287 84 WTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLG-ALELGRWIHSYMGKHRIDLNHIVGGALINMYS 162 (488)
Q Consensus 84 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 162 (488)
|+.+...+.+.+.+++|+++++++++.+ |-+...|+....++...+ ++++|...++.+++.. +-+..+|..+...+.
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHH
Confidence 3333334444444444444444444421 112233333333333333 2444444444444333 223344444444444
Q ss_pred hcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036287 163 RCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMIN 210 (488)
Q Consensus 163 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 210 (488)
+.|++++|...|+++.+ .+..+|+.+...+...|++++|++.|+++.+
T Consensus 124 ~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~ 174 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK 174 (315)
T ss_dssp HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred hhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44444444444444332 2334444444444444444444444444444
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=1.3e-08 Score=93.02 Aligned_cols=191 Identities=9% Similarity=-0.016 Sum_probs=144.4
Q ss_pred eeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036287 50 VVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNG-EMARALDLFREMQRDNVRPNEVTIVCVLSA 125 (488)
Q Consensus 50 ~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 125 (488)
..+++.+...+.+.+..++|+++++++. +.+..+|+.....+...| ++++|+..+++..+.. +-+..+|..+...
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 3466777778888899999999998875 446778888888888876 4899999999988764 3467888888888
Q ss_pred HHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCC-----
Q 036287 126 CSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGR----- 197 (488)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----- 197 (488)
+...|++++|...+..+++.. +.+..+|..+..+|.+.|++++|.+.|+++.+ .+..+|+.+...+...+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhh
Confidence 999999999999999998875 55788888899999999999999999988775 466788887777766665
Q ss_pred -hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcc
Q 036287 198 -SIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMT 244 (488)
Q Consensus 198 -~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 244 (488)
+++|++.+.+..+.. +.+...+..+...+...| .+++.+.+....
T Consensus 201 ~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~ 246 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRG-LSKYPNLLNQLL 246 (315)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTC-GGGCHHHHHHHH
T ss_pred hhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhcC-hHHHHHHHHHHH
Confidence 467888887777742 234555555555554433 455555555554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.02 E-value=1.5e-08 Score=92.36 Aligned_cols=182 Identities=10% Similarity=0.034 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 036287 97 MARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEE 176 (488)
Q Consensus 97 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 176 (488)
.++|..+|++..+...+.+...+...+......|+.+.++.+++.+++........+|...+....+.|+++.|+++|++
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 46677777777665334445556666666677777777777777777654333344677777777777777777777777
Q ss_pred cccC---CHHHHHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC
Q 036287 177 MKER---DVTTYNSLIAG-LAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ 252 (488)
Q Consensus 177 ~~~~---~~~~~~~li~~-~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 252 (488)
+.+. +...|...... +...|+.+.|..+|+.+.+. .+.+...+...+..+...|+++.|+.+|++..+..+..|+
T Consensus 160 al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~ 238 (308)
T d2onda1 160 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence 6542 22333333222 23356777788888877764 3344566677777777778888888888877654344443
Q ss_pred --hhhHHHHHHHHHhcCChHHHHHHHHhC
Q 036287 253 --IEHYGCIVDLLSRVGRPEEAYDFITNM 279 (488)
Q Consensus 253 --~~~~~~li~~~~~~g~~~~A~~~~~~m 279 (488)
...|...+..-.+.|+++.+.++++++
T Consensus 239 ~~~~iw~~~~~fE~~~G~~~~~~~~~~r~ 267 (308)
T d2onda1 239 KSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 346667777667778888888777765
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=3.1e-08 Score=87.46 Aligned_cols=197 Identities=8% Similarity=-0.141 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 036287 82 VCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMY 161 (488)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 161 (488)
.+|..+...|.+.|++++|+..|++.++.. +-+..+|..+..++...|++++|...|+.+++.. +.+..++..+..+|
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHH
Confidence 456666777777777777777777777643 3356667777777777777777777777777664 33455666777777
Q ss_pred HhcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----CCHH
Q 036287 162 SRCGDIDKALQVFEEMKE---RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHG----GLVD 234 (488)
Q Consensus 162 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~----g~~~ 234 (488)
...|++++|.+.|++..+ .+......+..++.+.+..+.+..+........ ++...+. ++..+... +..+
T Consensus 116 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHHHHH
Confidence 777777777777776653 233333334444455555555555555554432 2222222 22222211 1122
Q ss_pred HHHHHHHhcccccCcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH
Q 036287 235 LGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPDHI 286 (488)
Q Consensus 235 ~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~ 286 (488)
.+...+.... ...|+ ..+|..+...|...|++++|.+.|++. ...|+..
T Consensus 193 ~~~~~~~~~~---~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 243 (259)
T d1xnfa_ 193 RLKADATDNT---SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 243 (259)
T ss_dssp HHHHHCCSHH---HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHhh---hcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence 2222222211 22333 346677888899999999999999886 6667643
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.96 E-value=5.8e-10 Score=103.32 Aligned_cols=270 Identities=9% Similarity=-0.059 Sum_probs=195.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC--CCceeeHHHHHHHH----------HHcCCHHHHHHHHhhcC---CCCHHHHH
Q 036287 21 RLKLVELYGKCGEFKDAMQLFDEMPE--CNDVVASTVMINCY----------VEHGLVENAFEVFSRVK---VKDTVCWT 85 (488)
Q Consensus 21 ~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~----------~~~g~~~~A~~~f~~~~---~~~~~~~~ 85 (488)
...++....+.+..++|.++++...+ |++...|+..-..+ ...|++++|+.+|+... +.+...|.
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~ 111 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWH 111 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 34444444444556899999998765 44556676544333 34455889999998865 45778898
Q ss_pred HHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 036287 86 AMIDGLVRNGE--MARALDLFREMQRDNVRPNEVTIV-CVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYS 162 (488)
Q Consensus 86 ~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 162 (488)
.+..++...++ +++|+..+.++.... +++...+. .....+...+..+.|...++.+++.. +.+...++.+..+|.
T Consensus 112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~ 189 (334)
T d1dcea1 112 HRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLP 189 (334)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHH
T ss_pred HhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 88888877664 899999999998864 34555554 44466777899999999999998886 557888999999999
Q ss_pred hcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHh
Q 036287 163 RCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQS 242 (488)
Q Consensus 163 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 242 (488)
+.|++++|...+....+...... .....+...+..+++...+....... +++...+..+...+...++.++|...+..
T Consensus 190 ~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 267 (334)
T d1dcea1 190 QLHPQPDSGPQGRLPENVLLKEL-ELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQE 267 (334)
T ss_dssp HHSCCCCSSSCCSSCHHHHHHHH-HHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHhHHhHHHHH-HHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999888776665544222222 23334556778888999888888753 34444555666677778899999999998
Q ss_pred cccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 036287 243 MTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLLSACK 296 (488)
Q Consensus 243 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~ 296 (488)
..+. -+.+...+..+...|.+.|++++|.+.+++. .+.|+ ...|..|...+.
T Consensus 268 ~~~~--~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 268 LEPE--NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HCTT--CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHhh--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence 8742 2234678888999999999999999999988 66675 556666655554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=1e-06 Score=73.59 Aligned_cols=140 Identities=12% Similarity=-0.075 Sum_probs=87.5
Q ss_pred HHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHH
Q 036287 57 INCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGR 136 (488)
Q Consensus 57 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 136 (488)
...+...|+++.|++.|+++.+++..+|..+..+|...|++++|++.|++.++.+ +-+...|..+..++...|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 4455677778888887877777777777778888888888888888888877754 345667777777777777777777
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 036287 137 WIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGI 213 (488)
Q Consensus 137 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 213 (488)
..|+..+..... +... .|...|.. .......++..+..+|.+.|++++|.+.|.+..+...
T Consensus 91 ~~~~kAl~~~~~-n~~~------~~~~~~~~---------~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 91 KDLKEALIQLRG-NQLI------DYKILGLQ---------FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHTTTT-CSEE------ECGGGTBC---------CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCcc-CchH------HHHHhhhh---------cccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 777776543211 1000 00000000 0000123445566677777888888887777766433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=1.8e-06 Score=72.08 Aligned_cols=124 Identities=10% Similarity=-0.017 Sum_probs=96.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCC
Q 036287 20 TRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVK---VKDTVCWTAMIDGLVRNGE 96 (488)
Q Consensus 20 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~ 96 (488)
.|+. ...+...|+++.|.+.|+++..++ +.+|..+..+|.+.|++++|++.|++.. +.+..+|+.+..+|.+.|+
T Consensus 8 l~~~-g~~~~~~~d~~~Al~~~~~i~~~~-~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 8 LWNE-GVLAADKKDWKGALDAFSAVQDPH-SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHH-HHHHHHTTCHHHHHHHHHTSSSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcc
Confidence 3443 566788999999999999987766 7889999999999999999999999865 5578899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCchHHHHHHHHHHHHcC
Q 036287 97 MARALDLFREMQRDNVRPN----------------EVTIVCVLSACSQLGALELGRWIHSYMGKHR 146 (488)
Q Consensus 97 ~~~A~~~~~~m~~~g~~p~----------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 146 (488)
+++|+..|++..... +++ ..++..+..++...|++++|.+.+....+..
T Consensus 86 ~~~A~~~~~kAl~~~-~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 86 YDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhC-ccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999987642 111 2334445555666666666666666655544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.58 E-value=6.1e-07 Score=80.58 Aligned_cols=189 Identities=12% Similarity=-0.015 Sum_probs=125.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhccc-----CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC---CC--CHHHHHH
Q 036287 157 LINMYSRCGDIDKALQVFEEMKE-----RD----VTTYNSLIAGLAMHGRSIEAVEMFREMINQGI---RP--TKVTFVG 222 (488)
Q Consensus 157 li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p--~~~t~~~ 222 (488)
..++|..+|++++|.+.|.+..+ .+ ..+|+.+...|.+.|++++|++.+++..+.-. .+ ...++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 45678888888888888877653 22 24788888888899999999998887664211 11 1334555
Q ss_pred HHHHHh-ccCCHHHHHHHHHhccccc---CcccC-hhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC--------HHHH
Q 036287 223 VLNACS-HGGLVDLGFEIFQSMTRDY---GIEPQ-IEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD--------HIML 288 (488)
Q Consensus 223 ll~a~~-~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--------~~~~ 288 (488)
+...|. ..|++++|.+.+....+-. +..+. ..++..+...|...|++++|.+.+++. ...|+ ...+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 555663 4699999999988775321 11121 356778899999999999999999886 11111 1223
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHhcCCCCch-----hHHHHHHHHhc--CCChHHHHHHHHHH
Q 036287 289 GSLLSACKIHGKLQLGEQIAKRLLDCRSADSG-----TYVLLSNAYAS--SGKWKEAVQIRAKM 345 (488)
Q Consensus 289 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~a~~~~~~m 345 (488)
..++..+...|+++.|...+++..+.+|..+. ....|+.+|.. .+.+++|+..|+.+
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 44555667889999999999999998864322 34556666655 34578888777543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.56 E-value=2.1e-07 Score=78.49 Aligned_cols=97 Identities=10% Similarity=-0.000 Sum_probs=62.4
Q ss_pred cChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHH
Q 036287 251 PQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNA 328 (488)
Q Consensus 251 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 328 (488)
|+...+......|.+.|++++|+..|++. ...| ++..|..+..+|...|+++.|+..++++++++|.++.+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 44444555556666666666666666654 3333 356666666666677777777777777777777666667777777
Q ss_pred HhcCCChHHHHHHHHHHHh
Q 036287 329 YASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 329 ~~~~g~~~~a~~~~~~m~~ 347 (488)
|...|++++|...+++..+
T Consensus 82 ~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 7777777777776666544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.51 E-value=6.6e-06 Score=73.54 Aligned_cols=196 Identities=12% Similarity=-0.012 Sum_probs=111.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCchHHHHHHHHHHHHc----CC-CCcHhH
Q 036287 84 WTAMIDGLVRNGEMARALDLFREMQRD----NVRP-NEVTIVCVLSACSQLGALELGRWIHSYMGKH----RI-DLNHIV 153 (488)
Q Consensus 84 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~ 153 (488)
|......|...|++++|++.|.+.... +-++ -..+|..+..+|.+.|++++|...+....+. |. .....+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 344566777888888888888777542 1111 1346677777777788888887777766542 11 111334
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHhccc-----CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-----H-
Q 036287 154 GGALINMYS-RCGDIDKALQVFEEMKE-----RD----VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPT-----K- 217 (488)
Q Consensus 154 ~~~li~~y~-~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~- 217 (488)
+..+...|. ..|++++|...|++..+ .+ ..++..+...|...|++++|+..|++......... .
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 445555554 35778888777776542 11 23466677778888888888888887766421111 1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC---hhhHHHHHHHHHh--cCChHHHHHHHHhC
Q 036287 218 VTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ---IEHYGCIVDLLSR--VGRPEEAYDFITNM 279 (488)
Q Consensus 218 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~--~g~~~~A~~~~~~m 279 (488)
..+...+..+...|+++.|...++...+...--++ ......++.+|.. .+.+++|+..|+++
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 11223333455667777777777777642111111 1233444555543 23466666666665
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=5e-07 Score=68.85 Aligned_cols=88 Identities=16% Similarity=0.182 Sum_probs=65.6
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHH
Q 036287 260 VDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKE 337 (488)
Q Consensus 260 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 337 (488)
...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++.+|.++..|..++.+|...|++++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence 45566777777777777776 3334 466777777777778888888888888888788777788888888888888888
Q ss_pred HHHHHHHHHh
Q 036287 338 AVQIRAKMKE 347 (488)
Q Consensus 338 a~~~~~~m~~ 347 (488)
|...+++..+
T Consensus 90 A~~~~~~a~~ 99 (117)
T d1elwa_ 90 AKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 8888777765
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.41 E-value=3.8e-07 Score=68.89 Aligned_cols=89 Identities=11% Similarity=-0.111 Sum_probs=80.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCC
Q 036287 257 GCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGK 334 (488)
Q Consensus 257 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 334 (488)
-.+...+.+.|++++|+..|++. ...| ++..|..+..++...|++++|+..++++++.+|.++.++..|+..|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 34567788999999999999997 5556 588999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHH
Q 036287 335 WKEAVQIRAKM 345 (488)
Q Consensus 335 ~~~a~~~~~~m 345 (488)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=1.7e-06 Score=65.76 Aligned_cols=104 Identities=12% Similarity=0.034 Sum_probs=79.6
Q ss_pred HHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCh
Q 036287 224 LNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKL 301 (488)
Q Consensus 224 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 301 (488)
...+...|++++|...|....+. -+.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 44566677777777777777642 2334667788888888888888888888877 3334 578888899999999999
Q ss_pred hHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 036287 302 QLGEQIAKRLLDCRSADSGTYVLLSNAY 329 (488)
Q Consensus 302 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 329 (488)
++|...++++++.+|.++..+..+.++-
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 9999999999999999987777666543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.39 E-value=3.8e-07 Score=76.81 Aligned_cols=111 Identities=8% Similarity=-0.133 Sum_probs=68.9
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHH
Q 036287 215 PTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAPD-HIMLGSLL 292 (488)
Q Consensus 215 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll 292 (488)
|+...+......+...|++++|...|..+.+. -+.+...|..+..+|.+.|++++|+..|++. .+.|+ ...|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 44445555555666666666666666655531 1223556666666777777777777777665 55554 66777777
Q ss_pred HHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHH
Q 036287 293 SACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSN 327 (488)
Q Consensus 293 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 327 (488)
.++...|++++|...+++++++.|.+...+...+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 114 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIP 114 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 77777777888887777777766654444333333
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.35 E-value=0.0006 Score=61.14 Aligned_cols=281 Identities=11% Similarity=0.038 Sum_probs=157.3
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHhhCCCCCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHc
Q 036287 15 RSNRSTRLKLVELYGKCGEFKDAMQLFDEMPECNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRN 94 (488)
Q Consensus 15 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 94 (488)
.||..--....+.+.+.|.++.|..+|..+. -|..++..+.+.++++.|.+++.+.. +..+|..+...+.+.
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~------d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~~ 82 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDG 82 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT------CHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC------CHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHHhC
Confidence 3555556677788889999999999998654 47788899999999999999887653 667999999999988
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHH
Q 036287 95 GEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVF 174 (488)
Q Consensus 95 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 174 (488)
.+..-| .+.......++.....++..|-..|.+++...+++...... ..+..+++-|+.+|++.+. ++-.+.+
T Consensus 83 ~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~~-~kl~e~l 155 (336)
T d1b89a_ 83 KEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP-QKMREHL 155 (336)
T ss_dssp TCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCH-HHHHHHH
T ss_pred cHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhCh-HHHHHHH
Confidence 777554 22233345577777889999999999999999999876542 5677788999999998753 4444444
Q ss_pred HhcccC-CH----------HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhc
Q 036287 175 EEMKER-DV----------TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSM 243 (488)
Q Consensus 175 ~~~~~~-~~----------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 243 (488)
...... |+ ..|.-++-.|.+.|++++|+.+.-. -.|+.......+..+.+..+++...++....
T Consensus 156 ~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~-----~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~y 230 (336)
T d1b89a_ 156 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN-----HPTDAWKEGQFKDIITKVANVELYYRAIQFY 230 (336)
T ss_dssp HHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH-----STTTTCCHHHHHHHHHHCSSTHHHHHHHHHH
T ss_pred HhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH-----cchhhhhHHHHHHHHHccCChHHHHHHHHHH
Confidence 443221 11 1133444444444444444433221 1222222222233333333333333333322
Q ss_pred ccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHH
Q 036287 244 TRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYV 323 (488)
Q Consensus 244 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 323 (488)
.+. .| ...+.|+......-+..+ ++.-+.+.+++......++...+.+ +..+..
T Consensus 231 L~~---~p--~~i~~lL~~v~~~~d~~r-------------------~V~~~~k~~~l~li~p~Le~v~~~n--~~~vn~ 284 (336)
T d1b89a_ 231 LEF---KP--LLLNDLLMVLSPRLDHTR-------------------AVNYFSKVKQLPLVKPYLRSVQNHN--NKSVNE 284 (336)
T ss_dssp HHH---CG--GGHHHHHHHHGGGCCHHH-------------------HHHHHHHTTCTTTTHHHHHHHHTTC--CHHHHH
T ss_pred HHc---CH--HHHHHHHHHhccCCCHHH-------------------HHHHHHhcCCcHHHHHHHHHHHHcC--hHHHHH
Confidence 211 11 122223333322222222 3344455666666666676655433 346778
Q ss_pred HHHHHHhcCCChHHHHHH
Q 036287 324 LLSNAYASSGKWKEAVQI 341 (488)
Q Consensus 324 ~l~~~~~~~g~~~~a~~~ 341 (488)
.|...|...++++.-.+.
T Consensus 285 al~~lyie~~d~~~l~~~ 302 (336)
T d1b89a_ 285 SLNNLFITEEDYQALRTS 302 (336)
T ss_dssp HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhCcchhHHHHHH
Confidence 888888888886554433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.34 E-value=0.00012 Score=63.84 Aligned_cols=229 Identities=11% Similarity=-0.051 Sum_probs=120.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCchHHHHHHHHHHHHcCCCCcHhHHH
Q 036287 80 DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQ----LGALELGRWIHSYMGKHRIDLNHIVGG 155 (488)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~ 155 (488)
|+..+..|...+.+.+++++|++.|++..+.| |...+..+...+.. ..+...+..++....+.+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 45567777777777888888888888877765 44555555555544 345666666666666554 222223
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhcccC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 036287 156 ALINMYSR----CGDIDKALQVFEEMKER-DVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHG 230 (488)
Q Consensus 156 ~li~~y~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 230 (488)
.|...+.. ..+.+.|...++...+. .......+...+... ....
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~-------------------------------~~~~ 123 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDG-------------------------------KVVT 123 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC-------------------------------SSSC
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCC-------------------------------Cccc
Confidence 33333322 23444454444443322 112222222222110 0112
Q ss_pred CCHHHHHHHHHhcccccCcccChhhHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----hCChh
Q 036287 231 GLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSR----VGRPEEAYDFITNMKIAPDHIMLGSLLSACKI----HGKLQ 302 (488)
Q Consensus 231 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~ 302 (488)
.....+...+..... ..+...+..|...|.. ..+...+...++...-..+......|...+.. ..+.+
T Consensus 124 ~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 124 RDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred chhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchh
Confidence 223333333333221 1223334444444443 23344444444443212244555555544444 46788
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHhc----CCChHHHHHHHHHHHhCCCc
Q 036287 303 LGEQIAKRLLDCRSADSGTYVLLSNAYAS----SGKWKEAVQIRAKMKEAGVQ 351 (488)
Q Consensus 303 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~ 351 (488)
.|...|++..+.+ ++..+..|+.+|.. ..+.++|.+.|++..+.|-.
T Consensus 200 ~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 200 EALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred hhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 8888888888876 34577788888875 34788899999888777643
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=1.9e-06 Score=69.53 Aligned_cols=90 Identities=14% Similarity=0.115 Sum_probs=66.7
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChH
Q 036287 259 IVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWK 336 (488)
Q Consensus 259 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 336 (488)
....|.+.|++++|+..|++. ...| +...|..+...+...|+++.|...++++++++|.+..+|..++.+|...|+++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 345566777777777777776 3344 46777777777777788888888888888888877777878888888888888
Q ss_pred HHHHHHHHHHhC
Q 036287 337 EAVQIRAKMKEA 348 (488)
Q Consensus 337 ~a~~~~~~m~~~ 348 (488)
+|.+.+++..+.
T Consensus 96 eA~~~~~~a~~~ 107 (159)
T d1a17a_ 96 AALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 888777777653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=2.7e-06 Score=68.60 Aligned_cols=115 Identities=10% Similarity=0.001 Sum_probs=83.8
Q ss_pred HHHHhccCCHHHHHHHHHhcccccCccc-ChhhHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCC
Q 036287 224 LNACSHGGLVDLGFEIFQSMTRDYGIEP-QIEHYGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGK 300 (488)
Q Consensus 224 l~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 300 (488)
...|.+.|++++|...|..+.+. .| +...|..+..+|...|++++|.+.|++. .+.| +...|..+..++...|+
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHhhhcccc---chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 34456677777777777776642 33 3667777888888888888888888877 4445 46788889999999999
Q ss_pred hhHHHHHHHHHHhcCCCCchhHHHHHHHH--hcCCChHHHHHH
Q 036287 301 LQLGEQIAKRLLDCRSADSGTYVLLSNAY--ASSGKWKEAVQI 341 (488)
Q Consensus 301 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~ 341 (488)
+++|...++++++++|.++..+..+..+. ...+.++++...
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999888777665543 333445555543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.24 E-value=0.00092 Score=57.96 Aligned_cols=187 Identities=10% Similarity=-0.031 Sum_probs=119.4
Q ss_pred ceeeHHHHHHHHHHcCCHHHHHHHHhhcC-CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036287 49 DVVASTVMINCYVEHGLVENAFEVFSRVK-VKDTVCWTAMIDGLVR----NGEMARALDLFREMQRDNVRPNEVTIVCVL 123 (488)
Q Consensus 49 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 123 (488)
|+..+..|...+.+.+++++|.+.|++.. ..|..++..|...|.. ..++..|...+......+ +......+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccc
Confidence 35678888888999999999999999875 3477788788888877 668999999999988876 334444444
Q ss_pred HHHHh----cCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH----hcCCHHHHHHHHHhccc-CCHHHHHHHHHHHHh
Q 036287 124 SACSQ----LGALELGRWIHSYMGKHRIDLNHIVGGALINMYS----RCGDIDKALQVFEEMKE-RDVTTYNSLIAGLAM 194 (488)
Q Consensus 124 ~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~ 194 (488)
..+.. ..+.+.+...+....+.|.. .....+...+. .......|...+..... .+..++..+...|..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~ 154 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 154 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhcc
Confidence 44432 45788999999999888733 22233333333 24456777777766444 566777777777765
Q ss_pred ----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHhcc
Q 036287 195 ----HGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSH----GGLVDLGFEIFQSMT 244 (488)
Q Consensus 195 ----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~ 244 (488)
..+...+...++...+.| +......+...+.. ..+.++|..+|....
T Consensus 155 ~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa 209 (265)
T d1ouva_ 155 GRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKAC 209 (265)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH
T ss_pred CCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhh
Confidence 234555666666655543 33333333333322 234555555554443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=1.4e-05 Score=65.07 Aligned_cols=133 Identities=8% Similarity=-0.005 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHH
Q 036287 183 TTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDL 262 (488)
Q Consensus 183 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 262 (488)
..+......+.+.|++++|+..|++.+..- |... +..+.-......+ -...|+.+..+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~~------------~~~~~~~~~~~~~--------~~~~~~nla~~ 71 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYES------------SFSNEEAQKAQAL--------RLASHLNLAMC 71 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCC------------CCCSHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhcc------------ccchHHHhhhchh--------HHHHHHHHHHH
Confidence 455667778889999999999999887631 1100 0000000001111 12357778889
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHH
Q 036287 263 LSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKE 337 (488)
Q Consensus 263 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 337 (488)
|.+.|++++|+..++.. .+.| ++..|..+..++...|+++.|...|+++++++|.++.+...+..+....+...+
T Consensus 72 y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~ 148 (170)
T d1p5qa1 72 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 148 (170)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 5556 688899999999999999999999999999999999888888777766555443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=7.4e-06 Score=62.45 Aligned_cols=102 Identities=12% Similarity=-0.087 Sum_probs=70.5
Q ss_pred HHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCC---hHHHHHHHHhC-CCCCCH---HHHHHHHHH
Q 036287 222 GVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGR---PEEAYDFITNM-KIAPDH---IMLGSLLSA 294 (488)
Q Consensus 222 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p~~---~~~~~ll~~ 294 (488)
.+++.+...+++++|.+.|+..... -+.++.++..+..++.+.++ +++|+.+++++ ...|+. .+|..+..+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 4556666667777777777777631 12345666667777766444 34577777776 444432 367788888
Q ss_pred HHHhCChhHHHHHHHHHHhcCCCCchhHHHH
Q 036287 295 CKIHGKLQLGEQIAKRLLDCRSADSGTYVLL 325 (488)
Q Consensus 295 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 325 (488)
|...|++++|.+.++++++.+|.+..+...+
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~ 112 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNNQAKELE 112 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 9999999999999999999999886655443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=3e-05 Score=58.95 Aligned_cols=101 Identities=12% Similarity=-0.003 Sum_probs=64.8
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH---HHHHHHHHhcccCC-----HHHHHHHHHH
Q 036287 120 VCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDI---DKALQVFEEMKERD-----VTTYNSLIAG 191 (488)
Q Consensus 120 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~~~~~~~~~-----~~~~~~li~~ 191 (488)
..+++.+...+++++|++.|+..++.+ +.+..++..+..++.+.++. ++|..+|+++...+ ..+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 345666666677777777777777665 44566666667666654443 45777777765422 1256667777
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 036287 192 LAMHGRSIEAVEMFREMINQGIRPTKVTFVGV 223 (488)
Q Consensus 192 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 223 (488)
|.+.|++++|++.|++.++ +.|+......+
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l 111 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNNQAKEL 111 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCHHHHHH
Confidence 7788888888888888777 45655443333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=4.7e-05 Score=61.72 Aligned_cols=63 Identities=10% Similarity=-0.060 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 286 IMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 286 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
.+|..+..+|.+.|++++|+..++++++++|.++.+|..++.+|...|++++|...|++..+.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 456778888999999999999999999999999999999999999999999999999998774
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.04 E-value=2.3e-05 Score=58.66 Aligned_cols=88 Identities=11% Similarity=-0.037 Sum_probs=49.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 036287 87 MIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGD 166 (488)
Q Consensus 87 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 166 (488)
+...+.+.|++++|+..|++..+.. +-+..+|..+..++...+++++|...+..+++.. +.+..++..|...|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence 3445555666666666666655543 2245555555555556666666666665555544 3345555556666666666
Q ss_pred HHHHHHHHHh
Q 036287 167 IDKALQVFEE 176 (488)
Q Consensus 167 ~~~A~~~~~~ 176 (488)
+++|.+.|++
T Consensus 100 ~~~A~~~l~~ 109 (112)
T d1hxia_ 100 ANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.99 E-value=4.2e-05 Score=61.99 Aligned_cols=125 Identities=10% Similarity=-0.003 Sum_probs=90.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCccc-ChhhHHHHHHHHH
Q 036287 186 NSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEP-QIEHYGCIVDLLS 264 (488)
Q Consensus 186 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 264 (488)
......+...|++++|++.|++..+. +............ ..+.| ....|..+..+|.
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~----------~~~~~~~~~~~~nla~~~~ 88 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADG----------AKLQPVALSCVLNIGACKL 88 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHH----------GGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHH----------HHhChhhHHHHHHHHHHHH
Confidence 34555677888888888888876541 0000000000000 01122 3567778889999
Q ss_pred hcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcC
Q 036287 265 RVGRPEEAYDFITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASS 332 (488)
Q Consensus 265 ~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 332 (488)
+.|++++|+..+++. .+.|+ +..|..+..++...|+++.|...|+++++++|.+..++..+..++...
T Consensus 89 ~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l 158 (169)
T d1ihga1 89 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI 158 (169)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999887 66664 788999999999999999999999999999999988877776665433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.98 E-value=8e-05 Score=59.11 Aligned_cols=63 Identities=14% Similarity=-0.011 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 286 IMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 286 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
.+|..+..++.+.|++++|...++++++.+|.+..+|..++.+|...|++++|...|+...+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466778888889999999999999999999999999999999999999999999999887663
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.93 E-value=5.1e-05 Score=61.39 Aligned_cols=143 Identities=8% Similarity=0.009 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHH
Q 036287 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVD 261 (488)
Q Consensus 182 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 261 (488)
+..+.-....+.+.|++.+|+..|++.... .|. .. ....+.. .....+ ....|+.+..
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~--~~~----------~~-~~~~~~~-~~~~~~--------~~~~~~Nla~ 72 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSW--LEM----------EY-GLSEKES-KASESF--------LLAAFLNLAM 72 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTT----------CC-SCCHHHH-HHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHH----------hh-ccchhhh-hhcchh--------HHHHHHhHHH
Confidence 345666777888899999999988876542 000 00 0000000 001111 1235667888
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChH-HH
Q 036287 262 LLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWK-EA 338 (488)
Q Consensus 262 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~-~a 338 (488)
+|.+.|++++|+..++.. .+.| +...|..+..++...|++++|...++++++++|+++.+...+..+....+... ..
T Consensus 73 ~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~ 152 (168)
T d1kt1a1 73 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERD 152 (168)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence 899999999999999887 4444 58889999999999999999999999999999999888888877766655443 34
Q ss_pred HHHHHHHH
Q 036287 339 VQIRAKMK 346 (488)
Q Consensus 339 ~~~~~~m~ 346 (488)
.+++..|-
T Consensus 153 kk~~~~~f 160 (168)
T d1kt1a1 153 RRTYANMF 160 (168)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.89 E-value=4.6e-05 Score=62.27 Aligned_cols=115 Identities=12% Similarity=0.013 Sum_probs=81.8
Q ss_pred HHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCCh--HHHHHHHHhCCCCCCHHHHHHHHHHHHHhCChh
Q 036287 225 NACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRP--EEAYDFITNMKIAPDHIMLGSLLSACKIHGKLQ 302 (488)
Q Consensus 225 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~ 302 (488)
......|++++|.+.|.....-+.-.+-... ..+.+ .++..+ +. .....+..+..++...|+++
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~---------~~~~w~~~~r~~l-~~----~~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRGPVLDDL---------RDFQFVEPFATAL-VE----DKVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG---------TTSTTHHHHHHHH-HH----HHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccccccC---------cchHHHHHHHHHH-HH----HHHHHHHHHHHHHHHCCCch
Confidence 4567788888888888887743211110000 00000 011111 10 02456788899999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHh-----CCCccC
Q 036287 303 LGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKE-----AGVQKE 353 (488)
Q Consensus 303 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~ 353 (488)
+|...++++++.+|.+...|..++.+|...|++++|++.|+++.+ .|+.|.
T Consensus 85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~ 140 (179)
T d2ff4a2 85 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 140 (179)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 999999999999999999999999999999999999999998743 477654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=3.5e-05 Score=59.19 Aligned_cols=92 Identities=11% Similarity=0.183 Sum_probs=75.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCch-------hHHHHH
Q 036287 256 YGCIVDLLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSG-------TYVLLS 326 (488)
Q Consensus 256 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 326 (488)
+-.+...|.+.|++++|++.|++. .+.| +..+|..+..+|...|+++.|...++++++++|.++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 345677888999999999999887 4444 5888999999999999999999999999998876654 455677
Q ss_pred HHHhcCCChHHHHHHHHHHHh
Q 036287 327 NAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 327 ~~~~~~g~~~~a~~~~~~m~~ 347 (488)
..+...+++++|.+.+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 788889999999999987654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=3.4e-06 Score=81.76 Aligned_cols=132 Identities=10% Similarity=-0.018 Sum_probs=63.6
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHH
Q 036287 195 HGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYD 274 (488)
Q Consensus 195 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 274 (488)
.+.++.|+..+.+..+. -+++...+..+...+.+.|+.++|...+..... ..| ...+..+.+.+...|++++|..
T Consensus 99 ~~~Y~~ai~~l~~~~~l-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~~~-~~~~~~LG~l~~~~~~~~~A~~ 173 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFNV-DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS---YIC-QHCLVHLGDIARYRNQTSQAES 173 (497)
T ss_dssp HHHHHHHHHHHTC--------------------------------CCHHHH---HHH-HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHCC-ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC---CCH-HHHHHHHHHHHHHcccHHHHHH
Confidence 34444454444443332 122334455555566666676666665554432 111 2455667777777777777777
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhc
Q 036287 275 FITNM-KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYAS 331 (488)
Q Consensus 275 ~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 331 (488)
.|++. .+.|+ ...|+.|...+...|+..+|...|.+.+...|+.+.++..|...|.+
T Consensus 174 ~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 174 YYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 77766 44454 56777777777777777777777777777777777777777666543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.79 E-value=0.00013 Score=57.79 Aligned_cols=126 Identities=10% Similarity=-0.047 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHH
Q 036287 182 VTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVD 261 (488)
Q Consensus 182 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 261 (488)
...+......+.+.|++.+|+..|++....- |... ............ .....+|+.+..
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~-----------~~~~~~~~~~~~--------~~~~~~~~Nla~ 75 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTE-----------EWDDQILLDKKK--------NIEISCNLNLAT 75 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCT-----------TCCCHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchh-----------hhhhHHHHHhhh--------hHHHHHHhhHHH
Confidence 3467777888999999999999999887631 1100 000000000000 112346778899
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHH
Q 036287 262 LLSRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNA 328 (488)
Q Consensus 262 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 328 (488)
+|.+.|++++|++.+++. .+.| +...|..+..++...|+++.|...|+++++++|.+..+...+..+
T Consensus 76 ~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 144 (153)
T d2fbna1 76 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 144 (153)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999987 5555 588999999999999999999999999999999998776655443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.77 E-value=0.012 Score=52.48 Aligned_cols=246 Identities=17% Similarity=0.113 Sum_probs=146.8
Q ss_pred CceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036287 48 NDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACS 127 (488)
Q Consensus 48 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 127 (488)
++..--..+..-|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+++.+. -+..+|..+..+|.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHH
Confidence 335555567777889999999999998764 3667788889999999998887654 25678888888888
Q ss_pred hcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc---cCCHHHHHHHHHHHHhcCChhHHHHH
Q 036287 128 QLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMK---ERDVTTYNSLIAGLAMHGRSIEAVEM 204 (488)
Q Consensus 128 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l 204 (488)
+......+ .+.......+......++..|-..|.++....+++... ..+...++-++..|++.+ .++.++.
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~ 154 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREH 154 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHH
Confidence 77665443 22233333455555678889999999999998888653 356667888888888764 3333333
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCC
Q 036287 205 FREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPD 284 (488)
Q Consensus 205 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 284 (488)
++.. ...-| ...++..|.+.+. |.-++-.|.+.|.+++|..++-.-+ ++
T Consensus 155 l~~~---s~~y~---~~k~~~~c~~~~l-----------------------~~elv~Ly~~~~~~~~A~~~~i~~~--~~ 203 (336)
T d1b89a_ 155 LELF---WSRVN---IPKVLRAAEQAHL-----------------------WAELVFLYDKYEEYDNAIITMMNHP--TD 203 (336)
T ss_dssp HHHH---STTSC---HHHHHHHHHTTTC-----------------------HHHHHHHHHHTTCHHHHHHHHHHST--TT
T ss_pred HHhc---cccCC---HHHHHHHHHHcCC-----------------------hHHHHHHHHhcCCHHHHHHHHHHcc--hh
Confidence 3222 11111 1123344433333 3445666777777777776655432 23
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHH
Q 036287 285 HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAK 344 (488)
Q Consensus 285 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 344 (488)
+.-....+..+.+..+.+...++....++..| .....|+......-+..+..+.+++
T Consensus 204 ~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p---~~i~~lL~~v~~~~d~~r~V~~~~k 260 (336)
T d1b89a_ 204 AWKEGQFKDIITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYFSK 260 (336)
T ss_dssp TCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHcCH---HHHHHHHHHhccCCCHHHHHHHHHh
Confidence 33344556667777888777777777766544 4456666666666666666665543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.75 E-value=0.00018 Score=58.01 Aligned_cols=83 Identities=8% Similarity=0.004 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 036287 80 DTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALIN 159 (488)
Q Consensus 80 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 159 (488)
+...|+.+..+|.+.|++++|+..+.+.++.. +.+..+|..+..++...|+++.|.+.++.+++.. +.+..+...|..
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~ 153 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 153 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34567777788888888888888888888764 4466778888888888888888888888888765 335555555555
Q ss_pred HHHhc
Q 036287 160 MYSRC 164 (488)
Q Consensus 160 ~y~~~ 164 (488)
++.+.
T Consensus 154 ~~~~l 158 (169)
T d1ihga1 154 VKQKI 158 (169)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.73 E-value=0.00052 Score=55.13 Aligned_cols=63 Identities=13% Similarity=-0.015 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 286 IMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 286 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
.+|..+..++.+.|++++|+..++++++++|.+..+|..++.+|...|++++|.+.|++..+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456667788899999999999999999999999999999999999999999999999998764
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.68 E-value=5.2e-06 Score=80.37 Aligned_cols=222 Identities=8% Similarity=-0.037 Sum_probs=104.3
Q ss_pred HHHHHhhCCC--CCceeeHHHHHHHHHHcCCHHHHHHHHhhcCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036287 37 AMQLFDEMPE--CNDVVASTVMINCYVEHGLVENAFEVFSRVKVKDTV---CWTAMIDGLVRNGEMARALDLFREMQRDN 111 (488)
Q Consensus 37 A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g 111 (488)
|.+.|++..+ ++...+|..+..+|...|++++| |+++...|.. .++... ..-+..+..+++.++...+..
T Consensus 5 A~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~--~Lw~~~y~~~ie~~r~~~k~~ 79 (497)
T d1ya0a1 5 SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQ--DLWNHAFKNQITTLQGQAKNR 79 (497)
T ss_dssp HHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHH--HHHHHHTHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHH--HHHHHHHHHHHHHHHHhcccc
Confidence 4444444332 23344555555566666666655 3443322211 111111 111112445666666666544
Q ss_pred CCCCHHHHHHHHHHH--HhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcccCCH-HHHHHH
Q 036287 112 VRPNEVTIVCVLSAC--SQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKALQVFEEMKERDV-TTYNSL 188 (488)
Q Consensus 112 ~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~l 188 (488)
..++..-....+..+ ...+.++.+.+.+....+.. +++...+..+...+.+.|+.+.|...+.....++. .++..+
T Consensus 80 ~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~L 158 (497)
T d1ya0a1 80 ANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHL 158 (497)
T ss_dssp SCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHH
Confidence 334333222222111 22333444444333333222 23455566777777888888888777665544332 456667
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcC
Q 036287 189 IAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVG 267 (488)
Q Consensus 189 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 267 (488)
...+...|++++|+..|++..+. .+-+...|+.+...+...|+..+|...|.+... --+|-...+..|...|.+..
T Consensus 159 G~l~~~~~~~~~A~~~y~~A~~l-~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~--~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 159 GDIARYRNQTSQAESYYRHAAQL-VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA--VKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS--SSBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcccHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHhh
Confidence 77888888888888888888874 233456788888888888888888888887764 33555777777777776543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=0.00043 Score=52.77 Aligned_cols=61 Identities=10% Similarity=0.020 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 036287 83 CWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGK 144 (488)
Q Consensus 83 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 144 (488)
.+..+...|.+.|++++|+..|.+.++.+ +.+...+..+..++...|+++.|.+.+..+++
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence 34455566666666666666666666643 33455555566666666666666666655554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.50 E-value=9.5e-05 Score=58.03 Aligned_cols=125 Identities=10% Similarity=-0.022 Sum_probs=69.0
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHH
Q 036287 192 LAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEE 271 (488)
Q Consensus 192 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 271 (488)
|-+.+.+++|+..|++..+.. +.|...+..+..+|...+++..+.+ ..+.+++
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e--------------------------~~~~~~~ 59 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISD--------------------------AKQMIQE 59 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHH--------------------------HHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhH--------------------------HHHHHHH
Confidence 445556777777777776642 3334445555555543322211100 1122334
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHhC-----------ChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHH
Q 036287 272 AYDFITNM-KIAP-DHIMLGSLLSACKIHG-----------KLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEA 338 (488)
Q Consensus 272 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 338 (488)
|+..|++. .+.| +...|..+..+|...| +++.|.+.|+++++++|.+...+..|... ..|
T Consensus 60 Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka 132 (145)
T d1zu2a1 60 AITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKA 132 (145)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTH
T ss_pred HHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHH
Confidence 44444443 2333 2444555555444332 46889999999999999997665555444 466
Q ss_pred HHHHHHHHhCCC
Q 036287 339 VQIRAKMKEAGV 350 (488)
Q Consensus 339 ~~~~~~m~~~g~ 350 (488)
.+++.+..++|+
T Consensus 133 ~~~~~e~~k~~~ 144 (145)
T d1zu2a1 133 PQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHHSSS
T ss_pred HHHHHHHHHHhc
Confidence 777777777664
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.35 E-value=0.00046 Score=54.69 Aligned_cols=88 Identities=16% Similarity=0.006 Sum_probs=62.8
Q ss_pred HHHHHhcCChHHHHHHHHhC----CCCCC----------HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCC-------C-
Q 036287 260 VDLLSRVGRPEEAYDFITNM----KIAPD----------HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRS-------A- 317 (488)
Q Consensus 260 i~~~~~~g~~~~A~~~~~~m----~~~p~----------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p-------~- 317 (488)
...+.+.|++++|++.|++. +..|+ ...|+.+..++...|++++|...+++.+++.| .
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 33444556666666666654 21121 45677888888899999999988888876432 1
Q ss_pred ---CchhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 318 ---DSGTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 318 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
...+|..++.+|...|++++|.+.|++..+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 123577889999999999999999998765
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.34 E-value=0.0017 Score=52.61 Aligned_cols=59 Identities=5% Similarity=0.040 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhc
Q 036287 184 TYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSM 243 (488)
Q Consensus 184 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 243 (488)
.+..+...+...|++++|+..++++.+. -+-+...+..++.++...|+.++|.+.|+.+
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~-~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4444555555555555555555555543 1234444555555555555555555555544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.23 E-value=0.00037 Score=60.53 Aligned_cols=124 Identities=9% Similarity=0.020 Sum_probs=63.4
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccC-hhhHHHHHHHHHhcCChHHH
Q 036287 194 MHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQ-IEHYGCIVDLLSRVGRPEEA 272 (488)
Q Consensus 194 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 272 (488)
+.|++++|+..+++.++. -+-|...+..+...++..|++++|.+.++...+ +.|+ ...+..+...+...+..+++
T Consensus 8 ~~G~l~eAl~~l~~al~~-~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccHHH
Confidence 456666666666666654 233445555566666666666666666666553 2343 23333333333333333332
Q ss_pred HHHHHhC--CCCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchh
Q 036287 273 YDFITNM--KIAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGT 321 (488)
Q Consensus 273 ~~~~~~m--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 321 (488)
..-.... ...|+ ...+......+...|+.++|...++++.+..|..+..
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 2221111 11222 2333334455666777777777777777777665543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.22 E-value=0.001 Score=47.53 Aligned_cols=71 Identities=14% Similarity=0.018 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHH
Q 036287 256 YGCIVDLLSRVGRPEEAYDFITNM----K----IAPD-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLS 326 (488)
Q Consensus 256 ~~~li~~~~~~g~~~~A~~~~~~m----~----~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 326 (488)
+-.+...+.+.|++++|...|++. + ..++ ..++..|..++.+.|++++|...++++++++|.++.++..+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 335666777778888877777665 1 1223 567888999999999999999999999999999988777663
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.20 E-value=0.00013 Score=57.24 Aligned_cols=84 Identities=18% Similarity=0.029 Sum_probs=58.2
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH----------hCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhc
Q 036287 264 SRVGRPEEAYDFITNM-KIAP-DHIMLGSLLSACKI----------HGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYAS 331 (488)
Q Consensus 264 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~----------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 331 (488)
-+.+.+++|.+.|+.. ...| ++.++..+..++.. .+.+++|+..++++++++|.++.+|..++.+|..
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 3444556666666555 3333 34455555544432 2446889999999999999999999999999987
Q ss_pred CCC-----------hHHHHHHHHHHHh
Q 036287 332 SGK-----------WKEAVQIRAKMKE 347 (488)
Q Consensus 332 ~g~-----------~~~a~~~~~~m~~ 347 (488)
.|+ +++|.+.|++..+
T Consensus 88 ~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 88 FAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHhHHHhhhhhhcccc
Confidence 654 5778888877765
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.02 E-value=0.0013 Score=56.97 Aligned_cols=118 Identities=12% Similarity=-0.015 Sum_probs=64.3
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 036287 92 VRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSRCGDIDKAL 171 (488)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 171 (488)
.+.|++++|+..|++.++.. |-|...+..+...++..|++++|.+.++...+.. +.+...+..+...+...+..+++.
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHHH
Confidence 35577777777777777653 4456666677777777777777777777766653 223334444444443333333322
Q ss_pred HHHHhcc---cC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 036287 172 QVFEEMK---ER-DVTTYNSLIAGLAMHGRSIEAVEMFREMINQ 211 (488)
Q Consensus 172 ~~~~~~~---~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 211 (488)
.-..... .+ +...+......+...|+.++|.++++++.+.
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 2211111 11 1223333444566667777777777776653
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.79 E-value=0.0036 Score=49.24 Aligned_cols=62 Identities=13% Similarity=0.020 Sum_probs=40.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC-----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCC
Q 036287 255 HYGCIVDLLSRVGRPEEAYDFITNM--------KIAPD-----HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRS 316 (488)
Q Consensus 255 ~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 316 (488)
.|+.+..+|...|++++|.+.+++. ...++ ...+..+..++...|++++|...|++++++.|
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4455555566666666555554443 12222 23566778889999999999999999988654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.69 E-value=0.24 Score=45.81 Aligned_cols=53 Identities=9% Similarity=-0.066 Sum_probs=25.9
Q ss_pred HHHHHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036287 58 NCYVEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDN 111 (488)
Q Consensus 58 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 111 (488)
..+.+.++++.....+..-+ .+...-.....+....|+..+|...+..+-..|
T Consensus 80 ~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~ 132 (450)
T d1qsaa1 80 NELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (450)
T ss_dssp HHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 34455555555554443221 233333344555555666666665555554443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.47 E-value=0.0042 Score=44.11 Aligned_cols=64 Identities=16% Similarity=0.010 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCC-------chhHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 036287 285 HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSAD-------SGTYVLLSNAYASSGKWKEAVQIRAKMKEA 348 (488)
Q Consensus 285 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 348 (488)
+..+-.+...+.+.|+++.|...++++++..|.+ ..++..|+.+|.+.|++++|.+.++++.+.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3445577888999999999999999998864332 357889999999999999999999999774
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.95 E-value=0.18 Score=36.68 Aligned_cols=141 Identities=15% Similarity=0.175 Sum_probs=100.4
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHHHHHhcCChHH
Q 036287 192 LAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVDLLSRVGRPEE 271 (488)
Q Consensus 192 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 271 (488)
+.-.|..++..++..+...+ .+..-|+.++.-....-+-+...+.++.+-+-+.+.|-.. ...++..|.+.+.
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~N-lk~vv~C~~~~n~--- 84 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQN-LKSVVECGVINNT--- 84 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSC-THHHHHHHHHTTC---
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhc-HHHHHHHHHHhcc---
Confidence 44568888888888888764 3445566666655566666777777777766555554321 1223444444332
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCChHHHHHHHHHHHhCCCc
Q 036287 272 AYDFITNMKIAPDHIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGTYVLLSNAYASSGKWKEAVQIRAKMKEAGVQ 351 (488)
Q Consensus 272 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 351 (488)
+..-+...++....+|.-+.-.++++.+.+.+.+++.....+.++|-+.|...++-+++.+.-++|++
T Consensus 85 ------------~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 85 ------------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp ------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 33445566778888999999999999988887778889999999999999999999999999999885
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.45 E-value=0.18 Score=37.67 Aligned_cols=109 Identities=14% Similarity=0.022 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHH
Q 036287 96 EMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALINMYSR----CGDIDKAL 171 (488)
Q Consensus 96 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~ 171 (488)
++++|++.|++..+.|. | .....+. .....+.++|.+++....+.| ++.....|..+|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~-~--~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE-M--FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTC-T--THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCC-h--hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 45667777777666552 1 1222221 123345666666666666655 33444445555543 33566666
Q ss_pred HHHHhccc-CCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 036287 172 QVFEEMKE-RDVTTYNSLIAGLAM----HGRSIEAVEMFREMINQG 212 (488)
Q Consensus 172 ~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 212 (488)
+.|++..+ .++.+...|...|.. ..+.++|.++|++..+.|
T Consensus 80 ~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 66666543 344444445444443 235566666666655544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.06 E-value=0.066 Score=40.19 Aligned_cols=77 Identities=9% Similarity=-0.106 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCchHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCC
Q 036287 95 GEMARALDLFREMQRDNVRPNEVTIVCVLSACSQ----LGALELGRWIHSYMGKHRIDLNHIVGGALINMYSR----CGD 166 (488)
Q Consensus 95 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~ 166 (488)
.+.++|++.|++..+.| ++.....+...+.. ..+.++|.++++...+.| ++.....|..+|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 34555555555555544 23333333333322 234555555555555554 22333344444443 235
Q ss_pred HHHHHHHHHhc
Q 036287 167 IDKALQVFEEM 177 (488)
Q Consensus 167 ~~~A~~~~~~~ 177 (488)
.++|.+.|++.
T Consensus 111 ~~~A~~~~~~A 121 (133)
T d1klxa_ 111 EKQAVKTFEKA 121 (133)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55666665554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.14 E-value=0.4 Score=34.77 Aligned_cols=85 Identities=14% Similarity=0.058 Sum_probs=53.0
Q ss_pred HHcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHH
Q 036287 61 VEHGLVENAFEVFSRVKVKDTVCWTAMIDGLVRNGEMARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHS 140 (488)
Q Consensus 61 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 140 (488)
.+|+++......|-.+-. +....+..++...++|.-++-.++++.+.+.+ +|++.....+..||.+.|+..++..++.
T Consensus 67 s~C~Nlk~vv~C~~~~n~-~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~ 144 (161)
T d1wy6a1 67 DKCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLI 144 (161)
T ss_dssp GGCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 344455554444444322 33445556667777777777777777766543 6677777777777777777777777777
Q ss_pred HHHHcCC
Q 036287 141 YMGKHRI 147 (488)
Q Consensus 141 ~~~~~g~ 147 (488)
++-+.|+
T Consensus 145 ~ACe~G~ 151 (161)
T d1wy6a1 145 EACKKGE 151 (161)
T ss_dssp HHHHTTC
T ss_pred HHHHHhH
Confidence 7777664
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.42 E-value=0.32 Score=35.43 Aligned_cols=46 Identities=15% Similarity=0.171 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHhcCCCCc-hhHHHHHHHHhcCCChHHHHHHHHHHHh
Q 036287 302 QLGEQIAKRLLDCRSADS-GTYVLLSNAYASSGKWKEAVQIRAKMKE 347 (488)
Q Consensus 302 ~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 347 (488)
++|+.+++.+.+.+|.+. ..+..|+-+|.+.|++++|.+.++.+.+
T Consensus 55 ~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 55 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 345555555554444332 2344455555555555555555555443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.98 E-value=1.8 Score=31.29 Aligned_cols=71 Identities=14% Similarity=0.113 Sum_probs=47.5
Q ss_pred cChhhHHHHHHHHHhcC---ChHHHHHHHHhC-CCCC-C-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCCchh
Q 036287 251 PQIEHYGCIVDLLSRVG---RPEEAYDFITNM-KIAP-D-HIMLGSLLSACKIHGKLQLGEQIAKRLLDCRSADSGT 321 (488)
Q Consensus 251 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 321 (488)
|++.+--...-++.+.. ++++++.++++. ...| + ...|..|.-+|.+.|+++.|.+.++.+++.+|.+..+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 33333334444455443 345677777766 2233 3 3566778888999999999999999999999988543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=87.56 E-value=9.6 Score=34.28 Aligned_cols=171 Identities=10% Similarity=0.009 Sum_probs=88.8
Q ss_pred hcCCHHHHHHHHHhccc--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 036287 163 RCGDIDKALQVFEEMKE--RDVTTYNSLIAGLAMHGRSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIF 240 (488)
Q Consensus 163 ~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 240 (488)
..+..+.|...+..... .+.....-.+......+++..+...|+.|-.. ......-.--+..+....|+.+.|..+|
T Consensus 264 ~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~ 342 (450)
T d1qsaa1 264 GNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEIL 342 (450)
T ss_dssp STTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHH
Confidence 34455555555544332 22222222333344556777777666665322 1112223334556666777777777777
Q ss_pred HhcccccCcccChhhHHHHHHHHHhcCChHHHHHHHHhCCCCCC-HHH---HHHHHHHHHHhCChhHHHHHHHHHHhcCC
Q 036287 241 QSMTRDYGIEPQIEHYGCIVDLLSRVGRPEEAYDFITNMKIAPD-HIM---LGSLLSACKIHGKLQLGEQIAKRLLDCRS 316 (488)
Q Consensus 241 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 316 (488)
..+.. .++ -|..|... +.|..-.. . ....+..+. ... -..-+..+...|....|...+..+....
T Consensus 343 ~~~a~----~~~--fYG~LAa~--~Lg~~~~~-~-~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~- 411 (450)
T d1qsaa1 343 HQLMQ----QRG--FYPMVAAQ--RIGEEYEL-K-IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK- 411 (450)
T ss_dssp HHHHT----SCS--HHHHHHHH--HTTCCCCC-C-CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHhc----CCC--hHHHHHHH--HcCCCCCC-C-cCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC-
Confidence 76652 122 33332211 11110000 0 000011111 111 1123456678899999999998887543
Q ss_pred CCchhHHHHHHHHhcCCChHHHHHHHHHHH
Q 036287 317 ADSGTYVLLSNAYASSGKWKEAVQIRAKMK 346 (488)
Q Consensus 317 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 346 (488)
++.....++....+.|.++.|+.......
T Consensus 412 -~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 412 -SKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred -CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 34567788888999999999998776653
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.47 E-value=1.2 Score=30.56 Aligned_cols=63 Identities=14% Similarity=0.239 Sum_probs=45.3
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHhcccccCcccChhhHHHHHH
Q 036287 197 RSIEAVEMFREMINQGIRPTKVTFVGVLNACSHGGLVDLGFEIFQSMTRDYGIEPQIEHYGCIVD 261 (488)
Q Consensus 197 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 261 (488)
+.-++.+-++.+....+.|+.....+.+.||.+.+++..|.++|+.+..+ ..++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K--~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCcHHHHHHHHH
Confidence 45566666777777778888888888888888888888888888887753 3334456655543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.33 E-value=2.8 Score=28.58 Aligned_cols=61 Identities=13% Similarity=0.098 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCcHhHHHHHH
Q 036287 97 MARALDLFREMQRDNVRPNEVTIVCVLSACSQLGALELGRWIHSYMGKHRIDLNHIVGGALI 158 (488)
Q Consensus 97 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 158 (488)
.=++.+-++.+...++.|++....+.+.||-+.+++..|.++++-+.... .++...|..++
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil 82 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence 33555666667777788888888888888888888888888888776442 22334454443
|