Citrus Sinensis ID: 036290

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790------
Protein Sequence
MRILKRAFLFADKPSCHFHATRKRIHRLCGNNQFCSDSFLRKDPIFLAKSLSLSENLKSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSKRKRQREGNLLDHEGVCNVNDGIKTVDLKLELKLEF
Secondary Structure (PSIPRED)
ccHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHccccccccccHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHccccccccEEcHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHcccccEEEHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccEHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccEHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccEHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHcHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MRILKRAFlfadkpschfhaTRKRIHrlcgnnqfcsdsflrkdpIFLAKSLSLSENLKSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSkcgyfgwglRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLKMYVDMktngfmpnefAVGSVMKVCVSMgasefgysIHCFALKIrieknpfvgcsVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALqgcslvadfdigRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMAdkdviswntlfggfsenknpgqtaSLFHKFilsgsrpnhvTFSILLRQCGKLLDLDLGLQLQCLALHCgfldeenvtSSLIYMFCRCGavemahsvfdnvsyknITTWNELlsgycfnccdaDVLKTFCNIWesgvevngCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVnfgqldnsfefsngaerldMASWGAMMSALVHQGHNHEAVTIFHSLveagekpdeyILGTILNSCAAIGayqrtksihpFVIKLGFNTEVYVASAVIDAYAKCgdikgarmafdqsfnsndviVYNTLIMAYAHHGLVSEAMEIFDKMklanlqpsqATFVSVMSAcshkglvdkgCLLFKsmdsqygmqpspdcygCLVDMlsrngyledakhvieimpfqpsptvYRSLLSGcrihgnkelgEWASEKLLLLLPKNDAAHVLLSKRKrqregnlldhegvcnvndgiKTVDLKLELKLEF
Flexible Loop (DISEMBL)
mrilkraflfadkpschfHATRKRIHRLCGNNQFCSDSFLRKDPIFLAKSLSLSENLKSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSKrkrqregnlldhegvcnvndgiktvdLKLELKLEF
Low Complexity Region (SEG)
MRILKRAFLFADKPSCHFHATRKRIHRLCGNNQFCSDSFLRKDPIFLAKSLSLSENLKSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRqcgklldldlglqlqclalhcgFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSKRKRQREGNLLDHEGVCNVNDGIKTVDLKLELKLEF
Disordered region (IsUnstruct)
***LKRAFLFADKPSCHFHATRKRIHRLCGNNQFCSDSFLRKDPIFLAKSLSLSENLKSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK******GNLLDHEGVCNVNDGIKTVDLKLE*****
Disordered Region (DISOPRED)
MRILKRAFLFADKPSCHFHATRKRIHRLCGNNQFCSDSFLRKDPIFLAKSLSLSENLKSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSKRKRQREGNLLDHEGVCNVNDGIKTVDLKLELKLEF
Disordered Region (DISEMBL)
MRILKRAFLFADKPSCHFHATRKRIHRLCGNNQFCSDSFLRKDPIFLAKSLSLSENLKSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSKRKRQREGNLLDHEGVCNVNDGIKTVDLKLELKLEF
Disordered Region (DISPRO)
MRILKRAFLFADKPSCHFHATRKRIHRLCGNNQFCSDSFLRKDPIFLAKSLSLSENLKSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSKRKRQREGNLLDHEGVCNVNDGIKTVD*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRILKRAFLFADKPSCHFHATRKRIHRLCGNNQFCSDSFLRKDPIFLAKSLSLSENLKSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSKRKRQREGNLLDHEGVCNVNDGIKTVDLKLELKLEF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	796	2.2.26 [Sep-21-2011]
Q9SS83	1028	Pentatricopeptide repeat-	yes	no	0.849	0.657	0.318	1e-110
Q9SVP7	1064	Pentatricopeptide repeat-	no	no	0.873	0.653	0.304	1e-107
Q9SVA5	834	Pentatricopeptide repeat-	no	no	0.870	0.830	0.310	1e-103
Q9M1V3	960	Pentatricopeptide repeat-	no	no	0.870	0.721	0.298	2e-98
Q9SVH0	774	Pentatricopeptide repeat-	no	no	0.853	0.877	0.296	8e-97
Q9FLX6	893	Pentatricopeptide repeat-	no	no	0.888	0.791	0.282	4e-95
Q9STE1	857	Pentatricopeptide repeat-	no	no	0.907	0.842	0.286	4e-94
Q7Y211	890	Pentatricopeptide repeat-	no	no	0.811	0.725	0.312	1e-92
Q9FWA6	903	Pentatricopeptide repeat-	no	no	0.871	0.768	0.275	6e-91
Q3E9N1	775	Pentatricopeptide repeat-	no	no	0.885	0.909	0.286	3e-89

>sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2 SV=1

 Score =  401 bits (1031), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/679 (31%), Positives = 372/679 (54%), Gaps = 3/679 (0%)

Query: 84  NLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMP 143
            +I  Y + G       +F EM+  ++V+W +++S   + G   + ++ + +M+ +    
Sbjct: 266 TVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKS 325

Query: 144 NEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVF 203
               +GSV+     +   + G  +H  A+K+ +  N +VG S+++ Y+K   + AA +VF
Sbjct: 326 TRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVF 385

Query: 204 YSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFD 263
            ++   +   WNAMI GYAH G   + + +   M   G  +D +TF + L  C+   D +
Sbjct: 386 EALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLE 445

Query: 264 IGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFS 323
           +G Q H +II+ ++  ++ + NAL+DMY K   ++ A ++FERM D+D ++WNT+ G + 
Sbjct: 446 MGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYV 505

Query: 324 ENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEEN 383
           +++N  +   LF +  L G   +    +  L+ C  +  L  G Q+ CL++ CG   + +
Sbjct: 506 QDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLH 565

Query: 384 VTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESG 443
             SSLI M+ +CG ++ A  VF ++   ++ + N L++GY  N  +  V+  F  +   G
Sbjct: 566 TGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQNNLEEAVV-LFQEMLTRG 624

Query: 444 VEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCG-YICSSLIKSYVN-FGQLDN 501
           V  +  TF  +VE C + E+  +  Q HG I K GFSS G Y+  SL+  Y+N  G  + 
Sbjct: 625 VNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEA 684

Query: 502 SFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAA 561
              FS  +    +  W  MMS     G   EA+  +  +   G  PD+    T+L  C+ 
Sbjct: 685 CALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSV 744

Query: 562 IGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNT 621
           + + +  ++IH  +  L  + +   ++ +ID YAKCGD+KG+   FD+    ++V+ +N+
Sbjct: 745 LSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNS 804

Query: 622 LIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQY 681
           LI  YA +G   +A++IFD M+ +++ P + TF+ V++ACSH G V  G  +F+ M  QY
Sbjct: 805 LINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQY 864

Query: 682 GMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWA 741
           G++   D   C+VD+L R GYL++A   IE    +P   ++ SLL  CRIHG+   GE +
Sbjct: 865 GIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDIRGEIS 924

Query: 742 SEKLLLLLPKNDAAHVLLS 760
           +EKL+ L P+N +A+VLLS
Sbjct: 925 AEKLIELEPQNSSAYVLLS 943

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2

 Score =  389 bits (998), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/696 (30%), Positives = 363/696 (52%), Gaps = 1/696 (0%)

Query: 65  QVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNG 124
           Q+H  I+  G  +   + N LI +YS+ G+     RVFD +  ++  SW  ++S   +N 
Sbjct: 208 QIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNE 267

Query: 125 EFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGC 184
                ++++ DM   G MP  +A  SV+  C  + + E G  +H   LK+    + +V  
Sbjct: 268 CEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCN 327

Query: 185 SVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITM 244
           ++++ Y  LG++ +AE +F ++S  D   +N +I G + CGYG +A+ +   M  +G+  
Sbjct: 328 ALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEP 387

Query: 245 DKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVF 304
           D  T  + +  CS       G+Q+H    +     +  I  AL+++Y K + ++ A   F
Sbjct: 388 DSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYF 447

Query: 305 ERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLD 364
                ++V+ WN +   +    +   +  +F +  +    PN  T+  +L+ C +L DL+
Sbjct: 448 LETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLE 507

Query: 365 LGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYC 424
           LG Q+    +   F     V S LI M+ + G ++ A  +    + K++ +W  +++GY 
Sbjct: 508 LGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYT 567

Query: 425 FNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGY 484
               D   L TF  + + G+  +       V  C   +  +   QIH     +GFSS   
Sbjct: 568 QYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLP 627

Query: 485 ICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAG 544
             ++L+  Y   G+++ S+      E  D  +W A++S     G+N EA+ +F  +   G
Sbjct: 628 FQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREG 687

Query: 545 EKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGAR 604
              + +  G+ + + +     ++ K +H  + K G+++E  V +A+I  YAKCG I  A 
Sbjct: 688 IDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAE 747

Query: 605 MAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHK 664
             F +    N+V  +N +I AY+ HG  SEA++ FD+M  +N++P+  T V V+SACSH 
Sbjct: 748 KQFLEVSTKNEV-SWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHI 806

Query: 665 GLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRS 724
           GLVDKG   F+SM+S+YG+ P P+ Y C+VDML+R G L  AK  I+ MP +P   V+R+
Sbjct: 807 GLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRT 866

Query: 725 LLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLS 760
           LLS C +H N E+GE+A+  LL L P++ A +VLLS
Sbjct: 867 LLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLS 902

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1

 Score =  375 bits (963), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 218/701 (31%), Positives = 368/701 (52%), Gaps = 8/701 (1%)

Query: 66  VHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGE 125
           VHG I+  G   D +L N LI +YS+ G   +  +VF++M ERNLVSW+ +VSA   +G 
Sbjct: 66  VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGI 125

Query: 126 FDMGLKMYVDM-KTNGFMPNEFAVGSVMKVCVSMGASE--FGYSIHCFALKIRIEKNPFV 182
           ++  L ++++  +T    PNE+ + S ++ C  +        + +  F +K   +++ +V
Sbjct: 126 YEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYV 185

Query: 183 GCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGI 242
           G  +++FY K G++  A  VF ++       W  MI G    G  + +L +   ++ + +
Sbjct: 186 GTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNV 245

Query: 243 TMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFK 302
             D Y     L  CS++   + G+QIH  I+R  +E   S++N LID Y+K   +  A K
Sbjct: 246 VPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHK 305

Query: 303 VFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLD 362
           +F  M +K++ISW TL  G+ +N    +   LF      G +P+    S +L  C  L  
Sbjct: 306 LFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHA 365

Query: 363 LDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSG 422
           L  G Q+    +     ++  VT+SLI M+ +C  +  A  VFD  +  ++  +N ++ G
Sbjct: 366 LGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEG 425

Query: 423 YCFNCCDADV---LKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGF 479
           Y       ++   L  F ++    +  +  TF  ++       +  +  QIHG + K G 
Sbjct: 426 YSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGL 485

Query: 480 SSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHS 539
           +   +  S+LI  Y N   L +S    +  +  D+  W +M +  V Q  N EA+ +F  
Sbjct: 486 NLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLE 545

Query: 540 LVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGD 599
           L  + E+PDE+    ++ +   + + Q  +  H  ++K G     Y+ +A++D YAKCG 
Sbjct: 546 LQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGS 605

Query: 600 IKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMS 659
            + A  AFD S  S DV+ +N++I +YA+HG   +A+++ +KM    ++P+  TFV V+S
Sbjct: 606 PEDAHKAFD-SAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLS 664

Query: 660 ACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSP 719
           ACSH GLV+ G   F+ M  ++G++P  + Y C+V +L R G L  A+ +IE MP +P+ 
Sbjct: 665 ACSHAGLVEDGLKQFELM-LRFGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAA 723

Query: 720 TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLS 760
            V+RSLLSGC   GN EL E A+E  +L  PK+  +  +LS
Sbjct: 724 IVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLS 764

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370 OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2

 Score =  361 bits (926), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 210/704 (29%), Positives = 368/704 (52%), Gaps = 11/704 (1%)

Query: 63  GTQVHGHIVKLGFTNDI-FLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAI 121
           G Q+H  I K   + ++ FL   L+ MY KCG      +VFDEM +R   +W  ++ A +
Sbjct: 99  GRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYV 158

Query: 122 QNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPF 181
            NGE    L +Y +M+  G      +  +++K C  +     G  +H   +K+      F
Sbjct: 159 SNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGF 218

Query: 182 VGCSVLNFYAKLGDVAAAERVFYSISSD-DVGCWNAMIGGYAHCGYGFEALNVVSSMLFE 240
           +  ++++ YAK  D++AA R+F       D   WN+++  Y+  G   E L +   M   
Sbjct: 219 IVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMT 278

Query: 241 GITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECS-ISIVNALIDMYIKSSGMDY 299
           G   + YT ++AL  C   +   +G++IH  +++S    S + + NALI MY +   M  
Sbjct: 279 GPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQ 338

Query: 300 AFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGK 359
           A ++  +M + DV++WN+L  G+ +N    +    F   I +G + + V+ + ++   G+
Sbjct: 339 AERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGR 398

Query: 360 LLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNEL 419
           L +L  G++L    +  G+     V ++LI M+ +C         F  +  K++ +W  +
Sbjct: 399 LSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTV 458

Query: 420 LSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGF 479
           ++GY  N C  + L+ F ++ +  +E++      ++      ++  +V +IH  I++ G 
Sbjct: 459 IAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGL 518

Query: 480 SSCGYICSSLIKSY---VNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTI 536
                I + L+  Y    N G     FE   G    D+ SW +M+S+    G+  EAV +
Sbjct: 519 LDT-VIQNELVDVYGKCRNMGYATRVFESIKGK---DVVSWTSMISSSALNGNESEAVEL 574

Query: 537 FHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAK 596
           F  +VE G   D   L  IL++ A++ A  + + IH ++++ GF  E  +A AV+D YA 
Sbjct: 575 FRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYAC 634

Query: 597 CGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVS 656
           CGD++ A+  FD+      ++ Y ++I AY  HG    A+E+FDKM+  N+ P   +F++
Sbjct: 635 CGDLQSAKAVFDR-IERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLA 693

Query: 657 VMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQ 716
           ++ ACSH GL+D+G    K M+ +Y ++P P+ Y CLVDML R   + +A   +++M  +
Sbjct: 694 LLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTE 753

Query: 717 PSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLS 760
           P+  V+ +LL+ CR H  KE+GE A+++LL L PKN    VL+S
Sbjct: 754 PTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVS 797

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVH0|PP329_ARATH Pentatricopeptide repeat-containing protein At4g20770 OS=Arabidopsis thaliana GN=PCMP-E35 PE=3 SV=2

 Score =  355 bits (911), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 225/758 (29%), Positives = 374/758 (49%), Gaps = 79/758 (10%)

Query: 46  FLAKSLSLSENLKSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEM 105
           +LA  L    + + ++ G  +HG IV++G  +D +L N L+ +Y +CG   +  +VFDEM
Sbjct: 8   YLASLLRCYRDERCKLSGKVIHGFIVRMGMKSDTYLCNRLLDLYIECGDGDYARKVFDEM 67

Query: 106 A-------------------------------ERNLVSWTLIVSAAIQNGEFDMGLKMYV 134
           +                               ER++VSW  ++S  ++ G  +  L +Y 
Sbjct: 68  SVRDVYSWNAFLTFRCKVGDLGEACEVFDGMPERDVVSWNNMISVLVRKGFEEKALVVYK 127

Query: 135 DMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLG 194
            M  +GF+P+ F + SV+  C  +    FG   H  A+K  ++KN FVG ++L+ YAK G
Sbjct: 128 RMVCDGFLPSRFTLASVLSACSKVLDGVFGMRCHGVAVKTGLDKNIFVGNALLSMYAKCG 187

Query: 195 -DVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINAL 253
             V    RVF S+S  +   + A+IGG A      EA+ +   M  +G+ +D     N L
Sbjct: 188 FIVDYGVRVFESLSQPNEVSYTAVIGGLARENKVLEAVQMFRLMCEKGVQVDSVCLSNIL 247

Query: 254 ------QGCSLVADF---DIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVF 304
                 +GC  +++    ++G+QIH L +R      + + N+L+++Y K+  M+ A  +F
Sbjct: 248 SISAPREGCDSLSEIYGNELGKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIF 307

Query: 305 ERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLD 364
             M + +V+SWN +  GF +     ++     +   SG +PN VT   +L  C       
Sbjct: 308 AEMPEVNVVSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGAC------- 360

Query: 365 LGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYC 424
                                        R G VE    +F ++   +++ WN +LSGY 
Sbjct: 361 ----------------------------FRSGDVETGRRIFSSIPQPSVSAWNAMLSGYS 392

Query: 425 FNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGY 484
                 + +  F  +    ++ +  T   ++ +C R    +   QIHG +I+T  S   +
Sbjct: 393 NYEHYEEAISNFRQMQFQNLKPDKTTLSVILSSCARLRFLEGGKQIHGVVIRTEISKNSH 452

Query: 485 ICSSLIKSYVNFGQLDNS-FEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEA 543
           I S LI  Y    +++ S   F +    LD+A W +M+S   H   + +A+ +F  + + 
Sbjct: 453 IVSGLIAVYSECEKMEISECIFDDCINELDIACWNSMISGFRHNMLDTKALILFRRMHQT 512

Query: 544 GEK-PDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKG 602
               P+E    T+L+SC+ + +    +  H  V+K G+ ++ +V +A+ D Y KCG+I  
Sbjct: 513 AVLCPNETSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVETALTDMYCKCGEIDS 572

Query: 603 ARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACS 662
           AR  FD     N VI +N +I  Y H+G   EA+ ++ KM  +  +P   TFVSV++ACS
Sbjct: 573 ARQFFDAVLRKNTVI-WNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVLTACS 631

Query: 663 HKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVY 722
           H GLV+ G  +  SM   +G++P  D Y C+VD L R G LEDA+ + E  P++ S  ++
Sbjct: 632 HSGLVETGLEILSSMQRIHGIEPELDHYICIVDCLGRAGRLEDAEKLAEATPYKSSSVLW 691

Query: 723 RSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLS 760
             LLS CR+HG+  L    +EKL+ L P++ AA+VLLS
Sbjct: 692 EILLSSCRVHGDVSLARRVAEKLMRLDPQSSAAYVLLS 729

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLX6|PP430_ARATH Pentatricopeptide repeat-containing protein At5g52850, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H31 PE=2 SV=1

 Score =  349 bits (896), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 201/711 (28%), Positives = 366/711 (51%), Gaps = 4/711 (0%)

Query: 51  LSLSENLKSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNL 110
           LS  E+  SR+ G  +H  ++K G   ++ L NNL+++Y K        ++FDEM+ R +
Sbjct: 31  LSFCESNSSRI-GLHIHCPVIKFGLLENLDLCNNLLSLYLKTDGIWNARKLFDEMSHRTV 89

Query: 111 VSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCF 170
            +WT+++SA  ++ EF   L ++ +M  +G  PNEF   SV++ C  +    +G  +H  
Sbjct: 90  FAWTVMISAFTKSQEFASALSLFEEMMASGTHPNEFTFSSVVRSCAGLRDISYGGRVHGS 149

Query: 171 ALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEA 230
            +K   E N  VG S+ + Y+K G    A  +F S+ + D   W  MI          EA
Sbjct: 150 VIKTGFEGNSVVGSSLSDLYSKCGQFKEACELFSSLQNADTISWTMMISSLVGARKWREA 209

Query: 231 LNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDM 290
           L   S M+  G+  +++TF+  L G S     + G+ IH  II   +  ++ +  +L+D 
Sbjct: 210 LQFYSEMVKAGVPPNEFTFVKLL-GASSFLGLEFGKTIHSNIIVRGIPLNVVLKTSLVDF 268

Query: 291 YIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTF 350
           Y + S M+ A +V     ++DV  W ++  GF  N    +    F +    G +PN+ T+
Sbjct: 269 YSQFSKMEDAVRVLNSSGEQDVFLWTSVVSGFVRNLRAKEAVGTFLEMRSLGLQPNNFTY 328

Query: 351 SILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEM-AHSVFDNVS 409
           S +L  C  +  LD G Q+    +  GF D  +V ++L+ M+ +C A E+ A  VF  + 
Sbjct: 329 SAILSLCSAVRSLDFGKQIHSQTIKVGFEDSTDVGNALVDMYMKCSASEVEASRVFGAMV 388

Query: 410 YKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQ 469
             N+ +W  L+ G   +    D       + +  VE N  T   V+  C +  + + V +
Sbjct: 389 SPNVVSWTTLILGLVDHGFVQDCFGLLMEMVKREVEPNVVTLSGVLRACSKLRHVRRVLE 448

Query: 470 IHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGH 529
           IH  +++        + +SL+ +Y +  ++D ++      +R D  ++ ++++     G 
Sbjct: 449 IHAYLLRRHVDGEMVVGNSLVDAYASSRKVDYAWNVIRSMKRRDNITYTSLVTRFNELGK 508

Query: 530 NHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASA 589
           +  A+++ + +   G + D+  L   +++ A +GA +  K +H + +K GF+    V ++
Sbjct: 509 HEMALSVINYMYGDGIRMDQLSLPGFISASANLGALETGKHLHCYSVKSGFSGAASVLNS 568

Query: 590 VIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP 649
           ++D Y+KCG ++ A+  F++   + DV+ +N L+   A +G +S A+  F++M++   +P
Sbjct: 569 LVDMYSKCGSLEDAKKVFEE-IATPDVVSWNGLVSGLASNGFISSALSAFEEMRMKETEP 627

Query: 650 SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHV 709
              TF+ ++SACS+  L D G   F+ M   Y ++P  + Y  LV +L R G LE+A  V
Sbjct: 628 DSVTFLILLSACSNGRLTDLGLEYFQVMKKIYNIEPQVEHYVHLVGILGRAGRLEEATGV 687

Query: 710 IEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLS 760
           +E M  +P+  ++++LL  CR  GN  LGE  + K L L P + A ++LL+
Sbjct: 688 VETMHLKPNAMIFKTLLRACRYRGNLSLGEDMANKGLALAPSDPALYILLA 738

Arabidopsis thaliana (taxid: 3702)

>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1

 Score =  346 bits (888), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 209/730 (28%), Positives = 370/730 (50%), Gaps = 8/730 (1%)

Query: 63  GTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAER--NLVSWTLIVSAA 120
           G QVH  ++    + D +    ++ MY+ CG F    ++F  +  R  ++  W  I+S+ 
Sbjct: 54  GKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSF 113

Query: 121 IQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNP 180
           ++NG  +  L  Y  M   G  P+      ++K CV++   +    +      + ++ N 
Sbjct: 114 VRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNE 173

Query: 181 FVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFE 240
           FV  S++  Y + G +    ++F  +   D   WN M+ GYA CG     +   S M  +
Sbjct: 174 FVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMD 233

Query: 241 GITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYA 300
            I+ +  TF   L  C+     D+G Q+HGL++ S V+   SI N+L+ MY K    D A
Sbjct: 234 QISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDA 293

Query: 301 FKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKL 360
            K+F  M+  D ++WN +  G+ ++    ++ + F++ I SG  P+ +TFS LL    K 
Sbjct: 294 SKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKF 353

Query: 361 LDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELL 420
            +L+   Q+ C  +      +  +TS+LI  + +C  V MA ++F   +  ++  +  ++
Sbjct: 354 ENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMI 413

Query: 421 SGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFS 480
           SGY  N    D L+ F  + +  +  N  T   ++         ++  ++HG IIK GF 
Sbjct: 414 SGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFD 473

Query: 481 SCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSL 540
           +   I  ++I  Y   G+++ ++E      + D+ SW +M++      +   A+ IF  +
Sbjct: 474 NRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQM 533

Query: 541 VEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDI 600
             +G   D   +   L++CA + +    K+IH F+IK    ++VY  S +ID YAKCG++
Sbjct: 534 GVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNL 593

Query: 601 KGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKM-KLANLQPSQATFVSVMS 659
           K A   F ++    +++ +N++I A  +HG + +++ +F +M + + ++P Q TF+ ++S
Sbjct: 594 KAAMNVF-KTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIIS 652

Query: 660 ACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSP 719
           +C H G VD+G   F+SM   YG+QP  + Y C+VD+  R G L +A   ++ MPF P  
Sbjct: 653 SCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDA 712

Query: 720 TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSKRKRQREGNLLDHEGVCNV 779
            V+ +LL  CR+H N EL E AS KL+ L P N   +VL+S        N  + E V  V
Sbjct: 713 GVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLIS----NAHANAREWESVTKV 768

Query: 780 NDGIKTVDLK 789
              +K  +++
Sbjct: 769 RSLMKEREVQ 778

Arabidopsis thaliana (taxid: 3702)

>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2

 Score =  341 bits (875), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 208/666 (31%), Positives = 334/666 (50%), Gaps = 20/666 (3%)

Query: 113 WTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFAL 172
           W  ++ + +++      +  YVDM   G  P+ +A  +++K    +   E G  IH    
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 173 KIRIEKNPF-VGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEAL 231
           K     +   V  +++N Y K GD  A  +VF  IS  +   WN++I           AL
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 232 NVVSSMLFEGITMDKYTFINALQGCS---LVADFDIGRQIHGLIIRSEVECSISIVNALI 288
                ML E +    +T ++ +  CS   +     +G+Q+H   +R + E +  I+N L+
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLR-KGELNSFIINTLV 243

Query: 289 DMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHV 348
            MY K   +  +  +      +D+++WNT+     +N+   +      + +L G  P+  
Sbjct: 244 AMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEF 303

Query: 349 TFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEEN-VTSSLIYMFCRCGAVEMAHSVFDN 407
           T S +L  C  L  L  G +L   AL  G LDE + V S+L+ M+C C  V     VFD 
Sbjct: 304 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDG 363

Query: 408 VSYKNITTWNELLSGYCFNCCDADVLKTFCNIWES-GVEVNGCTFFYVVETCCRSENQQM 466
           +  + I  WN +++GY  N  D + L  F  + ES G+  N  T   VV  C RS     
Sbjct: 364 MFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR 423

Query: 467 VGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVH 526
              IHG ++K G     ++ ++L+  Y   G++D +       E  D+ +W  M++  V 
Sbjct: 424 KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVF 483

Query: 527 QGHNHEAVTIFHSL------VEAGE-----KPDEYILGTILNSCAAIGAYQRTKSIHPFV 575
             H+ +A+ + H +      V  G      KP+   L TIL SCAA+ A  + K IH + 
Sbjct: 484 SEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYA 543

Query: 576 IKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEA 635
           IK    T+V V SA++D YAKCG ++ +R  FDQ    N VI +N +IMAY  HG   EA
Sbjct: 544 IKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKN-VITWNVIIMAYGMHGNGQEA 602

Query: 636 MEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVD 695
           +++   M +  ++P++ TF+SV +ACSH G+VD+G  +F  M   YG++PS D Y C+VD
Sbjct: 603 IDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVD 662

Query: 696 MLSRNGYLEDAKHVIEIMPFQPSPT-VYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDA 754
           +L R G +++A  ++ +MP   +    + SLL   RIH N E+GE A++ L+ L P   +
Sbjct: 663 LLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVAS 722

Query: 755 AHVLLS 760
            +VLL+
Sbjct: 723 HYVLLA 728

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330 OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2

 Score =  335 bits (860), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 208/754 (27%), Positives = 374/754 (49%), Gaps = 60/754 (7%)

Query: 62  LGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIV---- 117
           LG Q H H++  GF    F+ N L+ +Y+    F     VFD+M  R++VSW  ++    
Sbjct: 66  LGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMINGYS 125

Query: 118 ---------------------------SAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGS 150
                                      S  +QNGE    ++++VDM   G   +      
Sbjct: 126 KSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAI 185

Query: 151 VMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDD 210
           ++KVC  +  +  G  IH   +++  + +     ++L+ YAK      + RVF  I   +
Sbjct: 186 ILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKN 245

Query: 211 VGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHG 270
              W+A+I G         AL     M      + +  + + L+ C+ +++  +G Q+H 
Sbjct: 246 SVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHA 305

Query: 271 LIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQ 330
             ++S+      +  A +DMY K   M  A  +F+   + +  S+N +  G+S+ ++  +
Sbjct: 306 HALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFK 365

Query: 331 TASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIY 390
              LFH+ + SG   + ++ S + R C  +  L  GLQ+  LA+      +  V ++ I 
Sbjct: 366 ALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAID 425

Query: 391 MFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCT 450
           M+ +C A+  A  VFD +  ++  +WN +++ +  N    + L  F ++  S +E +  T
Sbjct: 426 MYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFT 485

Query: 451 FFYVVETCCRSENQQMVG---QIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNS----- 502
           F  +++ C        +G   +IH +I+K+G +S   +  SLI  Y   G ++ +     
Sbjct: 486 FGSILKACTGGS----LGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHS 541

Query: 503 --FEFSNGA---ERLDM----------ASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKP 547
             F+ +N +   E L+            SW +++S  V +  + +A  +F  ++E G  P
Sbjct: 542 RFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITP 601

Query: 548 DEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAF 607
           D++   T+L++CA + +    K IH  VIK    ++VY+ S ++D Y+KCGD+  +R+ F
Sbjct: 602 DKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMF 661

Query: 608 DQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLV 667
           ++S    D + +N +I  YAHHG   EA+++F++M L N++P+  TF+S++ AC+H GL+
Sbjct: 662 EKSLR-RDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLI 720

Query: 668 DKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLS 727
           DKG   F  M   YG+ P    Y  +VD+L ++G ++ A  +I  MPF+    ++R+LL 
Sbjct: 721 DKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLG 780

Query: 728 GCRIHGNK-ELGEWASEKLLLLLPKNDAAHVLLS 760
            C IH N  E+ E A+  LL L P++ +A+ LLS
Sbjct: 781 VCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLS 814

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E9N1|PP359_ARATH Pentatricopeptide repeat-containing protein At4g39952, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E98 PE=2 SV=2

 Score =  330 bits (846), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 207/722 (28%), Positives = 360/722 (49%), Gaps = 17/722 (2%)

Query: 45  IFLAKSLSLSENLKSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDE 104
           I   +SLSL    K   L       I+  G + +IF+ + LI+ Y+  G      RVF  
Sbjct: 32  ILCDQSLSLESLRKHNAL-------IITGGLSENIFVASKLISSYASYGKPNLSSRVFHL 84

Query: 105 MAERNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFG 164
           +  R++  W  I+ A   NG++   L  +  M  +G  P+ F    V+  C  +     G
Sbjct: 85  VTRRDIFLWNSIIKAHFSNGDYARSLCFFFSMLLSGQSPDHFTAPMVVSACAELLWFHVG 144

Query: 165 YSIHCFALKIR-IEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAH 223
             +H   LK    ++N  VG S + FY+K G +  A  VF  +   DV  W A+I G+  
Sbjct: 145 TFVHGLVLKHGGFDRNTAVGASFVYFYSKCGFLQDACLVFDEMPDRDVVAWTAIISGHVQ 204

Query: 224 CGYGFEALNVVSSMLFEGITMDK---YTFINALQGCSLVADFDIGRQIHGLIIRSEVECS 280
            G     L  +  M   G  +DK    T     Q CS +     GR +HG  +++ +  S
Sbjct: 205 NGESEGGLGYLCKMHSAGSDVDKPNPRTLECGFQACSNLGALKEGRCLHGFAVKNGLASS 264

Query: 281 ISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFIL 340
             + +++   Y KS     A+  F  + D+D+ SW ++    + + +  ++  +F +   
Sbjct: 265 KFVQSSMFSFYSKSGNPSEAYLSFRELGDEDMFSWTSIIASLARSGDMEESFDMFWEMQN 324

Query: 341 SGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLAL-HCGFLDEENVTSSLIYMFCRCGAVE 399
            G  P+ V  S L+ + GK++ +  G       + HC  LD   V +SL+ M+C+   + 
Sbjct: 325 KGMHPDGVVISCLINELGKMMLVPQGKAFHGFVIRHCFSLDS-TVCNSLLSMYCKFELLS 383

Query: 400 MAHSVFDNVSYK-NITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETC 458
           +A  +F  +S + N   WN +L GY    C    ++ F  I   G+E++  +   V+ +C
Sbjct: 384 VAEKLFCRISEEGNKEAWNTMLKGYGKMKCHVKCIELFRKIQNLGIEIDSASATSVISSC 443

Query: 459 CRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWG 518
                  +   +H  ++KT       + +SLI  Y   G L  ++     A+  ++ +W 
Sbjct: 444 SHIGAVLLGKSLHCYVVKTSLDLTISVVNSLIDLYGKMGDLTVAWRMFCEADT-NVITWN 502

Query: 519 AMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKL 578
           AM+++ VH   + +A+ +F  +V    KP    L T+L +C   G+ +R + IH ++ + 
Sbjct: 503 AMIASYVHCEQSEKAIALFDRMVSENFKPSSITLVTLLMACVNTGSLERGQMIHRYITET 562

Query: 579 GFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEI 638
                + +++A+ID YAKCG ++ +R  FD   N  D + +N +I  Y  HG V  A+ +
Sbjct: 563 EHEMNLSLSAALIDMYAKCGHLEKSRELFDAG-NQKDAVCWNVMISGYGMHGDVESAIAL 621

Query: 639 FDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLS 698
           FD+M+ ++++P+  TF++++SAC+H GLV++G  LF  M  QY ++P+   Y CLVD+LS
Sbjct: 622 FDQMEESDVKPTGPTFLALLSACTHAGLVEQGKKLFLKMH-QYDVKPNLKHYSCLVDLLS 680

Query: 699 RNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVL 758
           R+G LE+A+  +  MPF P   ++ +LLS C  HG  E+G   +E+ +   P+ND  +++
Sbjct: 681 RSGNLEEAESTVMSMPFSPDGVIWGTLLSSCMTHGEFEMGIRMAERAVASDPQNDGYYIM 740

Query: 759 LS 760
           L+
Sbjct: 741 LA 742

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	796
224106537	805	predicted protein [Populus trichocarpa]	0.951	0.940	0.601	0.0
225462555	708	PREDICTED: pentatricopeptide repeat-cont	0.831	0.935	0.608	0.0
449451906	759	PREDICTED: pentatricopeptide repeat-cont	0.902	0.945	0.529	0.0
296085266	732	unnamed protein product [Vitis vinifera]	0.752	0.818	0.542	0.0
242082542	810	hypothetical protein SORBIDRAFT_08g00087	0.871	0.856	0.418	1e-162
218186285	787	hypothetical protein OsI_37194 [Oryza sa	0.865	0.875	0.414	1e-160
77553408	887	pentatricopeptide, putative [Oryza sativ	0.865	0.776	0.411	1e-159
115486944	841	Os12g0109800 [Oryza sativa Japonica Grou	0.865	0.819	0.411	1e-159
297611068	748	Os11g0109800 [Oryza sativa Japonica Grou	0.865	0.921	0.410	1e-157
413915870	810	hypothetical protein ZEAMMB73_686110 [Ze	0.866	0.851	0.414	1e-154

>gi|224106537|ref|XP_002314200.1| predicted protein [Populus trichocarpa] gi|222850608|gb|EEE88155.1| predicted protein [Populus trichocarpa]

 Score =  942 bits (2434), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/762 (60%), Positives = 578/762 (75%), Gaps = 5/762 (0%)

Query: 4   LKRAFLFADKPSCHFHATRKRIHRL---CGNNQFCSDSFLRKDPIFLAKSLSLSENLKSR 60
           LK  F F+ K     +   K +H+L         CS  F+ KD + L+K+LS  EN KS 
Sbjct: 10  LKTFFQFSKKVYKFNNIQLKNLHQLYSPISTKSSCSGFFIGKDSVALSKALSFCENSKSF 69

Query: 61  VLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAA 120
           +LGTQ+HG+I+KLGF++D+F+ NNLI  Y+K     +G  VFD M ERN+VSWTL+V  A
Sbjct: 70  ILGTQIHGYIIKLGFSSDVFVSNNLIKFYAKGAVLRYGFNVFDGMLERNVVSWTLMVCGA 129

Query: 121 IQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVC-VSMGASEFGYSIHCFALKIRIEKN 179
           IQ  E ++GL+++++M  +GF+PNEF +GSVMK C  S+    FG  +HCFALKI +E+N
Sbjct: 130 IQCEEVELGLEVFLEMIRDGFVPNEFGLGSVMKACGNSVEGRVFGLCVHCFALKIGMERN 189

Query: 180 PFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLF 239
           PFV CSVL+FYAKLGD+ AAERVF S+   DVGCWNAMIGGYA CGYGFEA+   S M  
Sbjct: 190 PFVSCSVLSFYAKLGDIGAAERVFESLEEVDVGCWNAMIGGYAQCGYGFEAIVTASLMRR 249

Query: 240 EGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDY 299
           +GI MDKYTFIN +QGCSL+ DF+ GRQIHGLIIRSE+E S  ++NAL+DMY K+ GM  
Sbjct: 250 KGIFMDKYTFINVIQGCSLLGDFNFGRQIHGLIIRSELELSAPVMNALMDMYFKNGGMKS 309

Query: 300 AFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGK 359
              VF++M D+DV++WNT+FG FS++++P   ASLFH F+L+  RPNH+TFSIL R+CGK
Sbjct: 310 GLVVFKKMHDRDVVTWNTVFGSFSQHEDPKDIASLFHSFLLTSMRPNHITFSILFRECGK 369

Query: 360 LLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNEL 419
           LL+LDLGLQ  CLALH G  DE N+TS+LI MF RCG +EMAH VF +   +NI  WNEL
Sbjct: 370 LLNLDLGLQFCCLALHFGLFDEANITSALINMFSRCGKMEMAHLVFKSKVSENIIIWNEL 429

Query: 420 LSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGF 479
           +SGY  NCCDA+ LKTF ++ + GVE N  TF  V+ETC RSENQ M  QIHG   K+GF
Sbjct: 430 ISGYKLNCCDAEALKTFYDLLQLGVEANEYTFSNVLETCSRSENQLMNRQIHGVAFKSGF 489

Query: 480 SSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHS 539
           +S GY+CSSLIK Y+  G LD+S +  N  +R DMA+WG M+SA VHQG + EA+   + 
Sbjct: 490 ASHGYVCSSLIKGYIKCGLLDDSLKVFNMLDRPDMAAWGTMISAFVHQGWDCEAIRSLNL 549

Query: 540 LVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGD 599
           L+EAGEKPDE+ILG+IL+SCA+  AY +TKS+H  +IKLGF   V+VASAV+DAYAKCGD
Sbjct: 550 LIEAGEKPDEFILGSILSSCASTVAYCQTKSVHSLIIKLGFEGHVFVASAVLDAYAKCGD 609

Query: 600 IKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMS 659
           I+ A+MAF+QS  S+DV++YN +I+AYAHHG V EA++ +DKMKLANLQPSQATFVSV++
Sbjct: 610 IQSAKMAFNQSCKSSDVVIYNAMIIAYAHHGRVVEALDTYDKMKLANLQPSQATFVSVIA 669

Query: 660 ACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSP 719
           AC H G V+KGC LFKSMD  YGM+PSPD YGCLVDM SRNGYLEDAK +IE +P+   P
Sbjct: 670 ACGHIGHVEKGCRLFKSMD-LYGMEPSPDIYGCLVDMFSRNGYLEDAKQIIESLPYPAWP 728

Query: 720 TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK 761
            + RSLLSGCR++GN+ELGEWA++KLL L+P NDAAH LL K
Sbjct: 729 AILRSLLSGCRMYGNRELGEWAAKKLLQLVPHNDAAHALLFK 770

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462555|ref|XP_002267326.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040, mitochondrial-like [Vitis vinifera]

 Score =  874 bits (2258), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/674 (60%), Positives = 524/674 (77%)

Query: 88  MYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFA 147
           MY+KCG+   GL+VF EM  +NLVSWTL+VS A+QNGEF+MGL +Y++M   G +PNEFA
Sbjct: 1   MYTKCGFLAGGLKVFGEMPMKNLVSWTLVVSGAVQNGEFEMGLGVYLEMIRTGLVPNEFA 60

Query: 148 VGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSIS 207
           +G V K C ++G  E G  +HCFALK+ +EKNPFVG S+LN YAKLGD+  AERVF  + 
Sbjct: 61  LGCVTKACAALGGKELGLCVHCFALKVGMEKNPFVGSSILNMYAKLGDIEDAERVFECMD 120

Query: 208 SDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQ 267
           +  VGCWNAMIGGYA C YGFE+L +VS M ++GI+MD +TFINAL+GC +V + + GRQ
Sbjct: 121 NLVVGCWNAMIGGYAQCSYGFESLKIVSVMQYKGISMDAFTFINALKGCLVVGNLNFGRQ 180

Query: 268 IHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKN 327
           IHGLII+SEV  S +++N+L+DMY K+ G  YA KVF+R+ DKD+ISWNT+F G S+  +
Sbjct: 181 IHGLIIQSEVGFSTAVMNSLMDMYFKNGGGLYALKVFDRLQDKDIISWNTVFAGLSQGDD 240

Query: 328 PGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSS 387
             +    FHK +L+G +PN VTFSIL R CG+ LDL  GLQ  CLA   G  DE +VTSS
Sbjct: 241 AREIGRFFHKLMLTGLKPNCVTFSILFRFCGEALDLVSGLQFHCLAFRFGISDEASVTSS 300

Query: 388 LIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVN 447
           LI MF RCGA+ MA  VFD+  +K+I T NE++SGY  NC +A+ L  FCN+   G+E +
Sbjct: 301 LINMFSRCGAMRMACLVFDSAPFKSIHTCNEMISGYNLNCHNAEALNLFCNLNGLGLEAD 360

Query: 448 GCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSN 507
            CTF   +E C R+ENQ++  Q+HG I+K+GF+S GY+CSSL+K YV FG LD+SFEF N
Sbjct: 361 ECTFSSALEACFRTENQKLGRQMHGTIVKSGFASQGYVCSSLLKCYVGFGLLDDSFEFFN 420

Query: 508 GAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQR 567
           G ERLD+ SWGAM+SALVH+G++ EA+ + + L EAG KPDE+I G+I N CA I AY++
Sbjct: 421 GVERLDLVSWGAMISALVHKGYSSEAIGLLNRLKEAGGKPDEFIFGSIFNCCAGIAAYRQ 480

Query: 568 TKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYA 627
           TKS+H  V+K+G+   V+VASAVIDAYAKCGDI+ AR  FDQ+    DVI++NT++MAYA
Sbjct: 481 TKSVHSLVVKMGYEAHVFVASAVIDAYAKCGDIENARRVFDQTSRFRDVILFNTMVMAYA 540

Query: 628 HHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSP 687
           HHGLV EA+E F+KMKLA L+PSQATFVSV+SACSH GLV++G + FKSM+  YGM PSP
Sbjct: 541 HHGLVREAVETFEKMKLATLEPSQATFVSVISACSHLGLVEQGDIFFKSMNLDYGMDPSP 600

Query: 688 DCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLL 747
           D YGCLVD+ SRNG+LEDAKH+IE MPF P P ++RSLL+GCRIHGNKELGEWA++KLL 
Sbjct: 601 DNYGCLVDLFSRNGFLEDAKHIIETMPFPPWPAIWRSLLNGCRIHGNKELGEWAAKKLLQ 660

Query: 748 LLPKNDAAHVLLSK 761
           L+P+NDAA+VLLSK
Sbjct: 661 LVPENDAAYVLLSK 674

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451906|ref|XP_004143701.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like [Cucumis sativus]

 Score =  779 bits (2011), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/722 (52%), Positives = 514/722 (71%), Gaps = 4/722 (0%)

Query: 40  LRKDPIFLAKSLSLSENLKSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGL 99
           L +DP  +A +LSLSEN KS +LG QVHGH+ KLGF  D F  NNL+ MY +CG+   G 
Sbjct: 8   LGRDPKTIATALSLSENTKSLILGAQVHGHMCKLGFDYDTFSMNNLLKMYFRCGFMCEGF 67

Query: 100 RVFDEMAERNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMG 159
           +VF+EM +RN+VSW+LI+S+  +NGEF++ L+ +++M  +G MP EFA GSVMK C  + 
Sbjct: 68  KVFEEMPQRNVVSWSLIISSLSENGEFELCLESFLEMMRDGLMPTEFAFGSVMKACADVE 127

Query: 160 ASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIG 219
           A  FG  +HC + KI +E+N FVG S L+ YA+LGD+ +AE VF  +   DVGCWNAMIG
Sbjct: 128 AYGFGSGVHCLSWKIGMEQNVFVGGSTLSMYARLGDITSAELVFEWMEKVDVGCWNAMIG 187

Query: 220 GYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVEC 279
           GY HCG G EALN VS +  EGI MD +T ++A++ CSL+ D D G+++HG I+R  +  
Sbjct: 188 GYTHCGLGLEALNAVSLLNSEGIKMDNFTIVSAVKACSLIQDLDSGKELHGFILRRGL-I 246

Query: 280 SISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFI 339
           S + +NAL+DMY+ S   +   K+F  M  +D+ISWNT+FGG S  K   +   LF KF+
Sbjct: 247 STAAMNALMDMYLISDRKNSVLKIFNSMQTRDIISWNTVFGGSSNEK---EIVDLFGKFV 303

Query: 340 LSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVE 399
           + G +PNH+TFS+L RQCG LLD  LG Q   LA+H GFLDE  V SS+I MF + G +E
Sbjct: 304 IEGMKPNHITFSVLFRQCGVLLDSRLGFQFFSLAVHLGFLDETRVLSSIISMFSQFGLME 363

Query: 400 MAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCC 459
           M HSVFD++ +K ++ WN+ +  Y  N  + +  +TF ++   GV  N  TF  ++ET C
Sbjct: 364 MVHSVFDSLVFKPVSAWNQFILAYSSNSFEMEAFRTFSSLLRYGVVANEYTFSIIIETAC 423

Query: 460 RSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGA 519
           + EN  M  Q+H A +K GF S  Y+  SLIK Y+  G L++SFE  N  E +DMA++GA
Sbjct: 424 KFENPWMCRQLHCASMKAGFGSHKYVSCSLIKCYILIGSLESSFEIFNQLEIVDMATYGA 483

Query: 520 MMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLG 579
           ++S LVHQ + +EA+   + L+E+G+KPDE+  G+ILN C++  AY +TK+IH  V K+G
Sbjct: 484 VISTLVHQNYMYEAIMFLNFLMESGKKPDEFTFGSILNGCSSRAAYHQTKAIHSLVEKMG 543

Query: 580 FNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIF 639
           F   V+VASA+IDAYAKCGDI  A+ AF+QS  SNDVIVYN+++MAYAHHGL  EA++ F
Sbjct: 544 FGFHVHVASAIIDAYAKCGDIGSAQGAFEQSCQSNDVIVYNSMMMAYAHHGLAWEAIQTF 603

Query: 640 DKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSR 699
           +KM++A +QPSQA+FVSV+SAC H GLV++G  LF++M S Y M PS D YGCLVDMLSR
Sbjct: 604 EKMRIAKVQPSQASFVSVISACRHMGLVEQGRSLFQTMKSDYNMTPSRDNYGCLVDMLSR 663

Query: 700 NGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLL 759
           NG+L DA+++IE MPF P P + RSLLSGCRI+GN ELG+W +EKLL L P+N A HVLL
Sbjct: 664 NGFLYDARYIIESMPFSPWPAILRSLLSGCRIYGNVELGQWTAEKLLSLAPQNLATHVLL 723

Query: 760 SK 761
           SK
Sbjct: 724 SK 725

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085266|emb|CBI28998.3| unnamed protein product [Vitis vinifera]

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/605 (54%), Positives = 432/605 (71%), Gaps = 6/605 (0%)

Query: 163 FGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYA 222
            G  IH   +K+    + F   +++  Y K G +A   +VF  +   ++  W  ++ G  
Sbjct: 94  LGSQIHAQIIKLGFCNDIFSQNNLIRMYTKCGFLAGGLKVFGEMPMKNLVSWTLVVSGAV 153

Query: 223 HCGYGFEALNVVSSMLFEGITMDKYTF------INALQGCSLVADFDIGRQIHGLIIRSE 276
             G     L V   M+  G+  +++          AL GC +V + + GRQIHGLII+SE
Sbjct: 154 QNGEFEMGLGVYLEMIRTGLVPNEFALGCVTKACAALGGCLVVGNLNFGRQIHGLIIQSE 213

Query: 277 VECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFH 336
           V  S +++N+L+DMY K+ G  YA KVF+R+ DKD+ISWNT+F G S+  +  +    FH
Sbjct: 214 VGFSTAVMNSLMDMYFKNGGGLYALKVFDRLQDKDIISWNTVFAGLSQGDDAREIGRFFH 273

Query: 337 KFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCG 396
           K +L+G +PN VTFSIL R CG+ LDL  GLQ  CLA   G  DE +VTSSLI MF RCG
Sbjct: 274 KLMLTGLKPNCVTFSILFRFCGEALDLVSGLQFHCLAFRFGISDEASVTSSLINMFSRCG 333

Query: 397 AVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVE 456
           A+ MA  VFD+  +K+I T NE++SGY  NC +A+ L  FCN+   G+E + CTF   +E
Sbjct: 334 AMRMACLVFDSAPFKSIHTCNEMISGYNLNCHNAEALNLFCNLNGLGLEADECTFSSALE 393

Query: 457 TCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMAS 516
            C R+ENQ++  Q+HG I+K+GF+S GY+CSSL+K YV FG LD+SFEF NG ERLD+ S
Sbjct: 394 ACFRTENQKLGRQMHGTIVKSGFASQGYVCSSLLKCYVGFGLLDDSFEFFNGVERLDLVS 453

Query: 517 WGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVI 576
           WGAM+SALVH+G++ EA+ + + L EAG KPDE+I G+I N CA I AY++TKS+H  V+
Sbjct: 454 WGAMISALVHKGYSSEAIGLLNRLKEAGGKPDEFIFGSIFNCCAGIAAYRQTKSVHSLVV 513

Query: 577 KLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAM 636
           K+G+   V+VASAVIDAYAKCGDI+ AR  FDQ+    DVI++NT++MAYAHHGLV EA+
Sbjct: 514 KMGYEAHVFVASAVIDAYAKCGDIENARRVFDQTSRFRDVILFNTMVMAYAHHGLVREAV 573

Query: 637 EIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDM 696
           E F+KMKLA L+PSQATFVSV+SACSH GLV++G + FKSM+  YGM PSPD YGCLVD+
Sbjct: 574 ETFEKMKLATLEPSQATFVSVISACSHLGLVEQGDIFFKSMNLDYGMDPSPDNYGCLVDL 633

Query: 697 LSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAH 756
            SRNG+LEDAKH+IE MPF P P ++RSLL+GCRIHGNKELGEWA++KLL L+P+NDAA+
Sbjct: 634 FSRNGFLEDAKHIIETMPFPPWPAIWRSLLNGCRIHGNKELGEWAAKKLLQLVPENDAAY 693

Query: 757 VLLSK 761
           VLLSK
Sbjct: 694 VLLSK 698

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242082542|ref|XP_002441696.1| hypothetical protein SORBIDRAFT_08g000870 [Sorghum bicolor] gi|241942389|gb|EES15534.1| hypothetical protein SORBIDRAFT_08g000870 [Sorghum bicolor]

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 294/702 (41%), Positives = 437/702 (62%), Gaps = 8/702 (1%)

Query: 67  HGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEF 126
           H   +KLG + D F  N+L+  Y+K G+ G  L VFDE   RNLV+WT +VSAA++ G  
Sbjct: 74  HASTIKLGVSADTFTANHLLIYYAKRGHLGSALDVFDETPRRNLVTWTAMVSAAVRGGAP 133

Query: 127 DMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGAS---EFGYSIHCFALKIR-IEKNPFV 182
           D+GL +   M  +GF PNEFA+ S +  C    A+   + G S+H  A+K   ++ NP+V
Sbjct: 134 DLGLALLSSMVRSGFCPNEFALASALGACCQSAAAADVKLGLSLHGLAVKAGGLDGNPYV 193

Query: 183 GCSVLNFYAKLGDVAAAERVFYSISSD--DVGCWNAMIGGYAHCGYGFEALNVVSSMLFE 240
           G S++  YAK G VAA ERVF  ISS   DV CWN M+ GY   G G++ +  V  M   
Sbjct: 194 GSSLMLLYAKHGRVAAVERVFAGISSSSRDVACWNTMLEGYVATGRGYDVMRTVVLMHHS 253

Query: 241 GITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYA 300
           GI  D +T+I+A++  S+  D + GRQ+HGL+I SE E + S++N L+DMY K+   + A
Sbjct: 254 GIAADLFTYISAVKASSITCDLNFGRQVHGLVIHSEFESNTSVMNTLMDMYFKAGQKEAA 313

Query: 301 FKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKL 360
             +F ++  KD +SWNT+  G + +++    A  F      G +PN VTFS++LR  G  
Sbjct: 314 VVIFGKIQWKDTVSWNTMISGLAHDEDERAAADCFFDMSRYGCKPNQVTFSVMLRLSGAK 373

Query: 361 LDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELL 420
               LGLQ+  LA   G+ D   V +++I M  +CG +  A+  F N+S +N+ TWNE++
Sbjct: 374 ESASLGLQILGLAYRHGYSDNVLVANAVINMLSQCGLLGCAYGFFCNLSVRNVVTWNEMI 433

Query: 421 SGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFS 480
           +GY  + C  D ++ F ++   G   +  T+  V+    +  + +   QIH  ++K GF+
Sbjct: 434 AGYGLHGCSEDAMRLFRSLVCFGARPDEFTYPAVLSAFQQDHDARNHEQIHACVLKQGFA 493

Query: 481 SCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSL 540
           SC ++ +SLIK+ V  G + +  +    A ++D+ SWG  +SA V    + EA+ +F+  
Sbjct: 494 SCQFVSTSLIKAKVALGSVLDPLKIIEEAGKMDLVSWGVTISAFVKHDLDKEALFLFNLF 553

Query: 541 -VEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGD 599
            V+  EKPDE+ILGTILN+CA     ++ + IH  V++ G +    V+SA++DAYAKCGD
Sbjct: 554 RVDCPEKPDEFILGTILNACANAALIRQCRCIHALVVRTGHSKHFCVSSALVDAYAKCGD 613

Query: 600 IKGARMAFDQ-SFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVM 658
           I  A+  F + S  ++D I+YNT++ AYA+HGL+ E + ++  M    L P+ ATF++V+
Sbjct: 614 ITAAKSTFAEVSSVTDDAILYNTMLTAYANHGLIHEVLSLYQDMTQLQLAPTPATFIAVI 673

Query: 659 SACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPS 718
           SACSH GLV++G LLF SM S +GM P+   Y CL+D+L+R G LE+AK VIE MPFQP 
Sbjct: 674 SACSHLGLVEQGKLLFSSMLSAHGMNPTRANYTCLIDLLARRGLLEEAKGVIEAMPFQPW 733

Query: 719 PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLS 760
           P V+RSL++GCRIHGNKELG  A+E++L + P +D A+V LS
Sbjct: 734 PAVWRSLMNGCRIHGNKELGLLAAEQILTMAPNSDGAYVSLS 775

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218186285|gb|EEC68712.1| hypothetical protein OsI_37194 [Oryza sativa Indica Group]

 Score =  573 bits (1477), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 289/697 (41%), Positives = 439/697 (62%), Gaps = 8/697 (1%)

Query: 72  KLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLK 131
           KLG     F  N L+  Y++ G     L+VFDEM  RNLVSWT +VSA+ +NG   +G +
Sbjct: 56  KLGTLAHTFNMNYLLIYYARRGLLDSALKVFDEMPHRNLVSWTAMVSASTRNGAPHLGFR 115

Query: 132 MYVDMKTNGFMPNEFAVGSVMKVCVSMGASE-----FGYSIHCFALKIRIEKNPFVGCSV 186
            +V M  +GF PNEFA+ +++  C SM A          S+H  A++  ++ NPFVG S+
Sbjct: 116 FFVSMIRSGFCPNEFALATMLTACHSMLAHSSNKLPIALSLHGVAVRAGLDSNPFVGSSL 175

Query: 187 LNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDK 246
           L  YAK G +AAA+R F  I + D+ CWNAM+ GY   G+G  A++ V  M   G+  D+
Sbjct: 176 LLMYAKHGRIAAAQRAFAHIRNKDLTCWNAMLEGYVSNGFGHHAISTVLVMHHSGLAPDR 235

Query: 247 YTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFER 306
           YT+I+A++ CS+ A +D+GRQ+H L+I S +E + S++N+L+DMY ++   + A  VF +
Sbjct: 236 YTYISAVKACSISAQWDLGRQLHCLVIHSMLESNTSVMNSLVDMYFRARQKETAASVFRK 295

Query: 307 MADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLG 366
           +  KD +SWNT+F GF+ +++             +G +PN VTFS+LLR  G   +  LG
Sbjct: 296 IRQKDTVSWNTMFSGFAHDEDDKAVFGYLIDMSRTGFKPNEVTFSVLLRLSGAKENASLG 355

Query: 367 LQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFN 426
           LQ+  LA   G+ D   V +++I M  RCG ++ A+  F +++++NI TWNE+++GY   
Sbjct: 356 LQIFALAYRHGYTDNVLVANAVINMLFRCGLLDRAYGFFCSLTFRNIVTWNEIIAGYGLF 415

Query: 427 CCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYIC 486
               D ++ F ++   G   +  T+  V+     +   +   QIH  I+K GF+SC ++ 
Sbjct: 416 SRSEDAMRLFRSLVCIGERPDEFTYSAVLSAFQEAHGARDHEQIHAIILKQGFASCQFVS 475

Query: 487 SSLIKS-YVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLV-EAG 544
           +SLIK+    FG + +S +    + ++++ SWGA++SA +  G N E + +F+    ++ 
Sbjct: 476 TSLIKANAAAFGSVQSSLKIIEDSGKMELVSWGAIISAFLKHGLNDEVIFLFNLFRGDST 535

Query: 545 EKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGAR 604
            KPDE+IL T+LN+CA     +  + IH  V+K G +    VASAV+DAYAKCG+I  A 
Sbjct: 536 NKPDEFILATVLNACANAALIRHCRCIHSLVLKTGHSNHFCVASAVVDAYAKCGEITSAE 595

Query: 605 MAFDQ-SFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSH 663
            AF   S  +ND I+YNT++ AYA+HGL+ EA+ ++++M  A L P+ ATFV+++SACSH
Sbjct: 596 SAFTAVSSATNDAIMYNTMLTAYANHGLIHEALNLYEEMTKAKLNPTPATFVAILSACSH 655

Query: 664 KGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYR 723
            GLV++G L F +M S YGM P    Y CLVD+L+R G L++AK VI+ MPFQP P V+R
Sbjct: 656 LGLVEQGKLAFSTMLSAYGMHPERANYACLVDLLARKGLLDEAKGVIDAMPFQPWPAVWR 715

Query: 724 SLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLS 760
           SL++GCRIHGNK+LG  A+E++L + P +D A+V LS
Sbjct: 716 SLVNGCRIHGNKQLGVLAAEQILRMAPSSDGAYVSLS 752

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77553408|gb|ABA96204.1| pentatricopeptide, putative [Oryza sativa Japonica Group]

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 287/697 (41%), Positives = 438/697 (62%), Gaps = 8/697 (1%)

Query: 72  KLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLK 131
           KLG     F  N L   Y++ G     L+VFDEM  RNLVSWT +VSA+ +NG   +G +
Sbjct: 15  KLGTLAHTFNMNYLPIYYARRGLLDSALKVFDEMPHRNLVSWTAMVSASTRNGAPHLGFR 74

Query: 132 MYVDMKTNGFMPNEFAVGSVMKVCVSMGASE-----FGYSIHCFALKIRIEKNPFVGCSV 186
            +V M  +GF PNEF++ +++  C SM A          S+H  A++  ++ NPFVG S+
Sbjct: 75  FFVSMIRSGFCPNEFSLATMLTACHSMVAHSSNKLLIALSLHGVAVRAGLDSNPFVGSSL 134

Query: 187 LNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDK 246
           L  YAK G +AAA+R F  I + D+ CWNAM+ GY   G+G  A++ V  M   G+  D+
Sbjct: 135 LLMYAKHGRIAAAQRAFAHIRNKDLTCWNAMLEGYVSNGFGHHAISTVLVMHHSGLAPDR 194

Query: 247 YTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFER 306
           YT+I+A++ CS+ A + +GRQ+H L+I S +E + S++N+L+DMY ++   + A  VF +
Sbjct: 195 YTYISAVKACSISAQWGLGRQLHCLVIHSMLESNTSVMNSLVDMYFRARQKETAASVFRK 254

Query: 307 MADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLG 366
           +  KD +SWNT+F GF+ +++             +G +PN VTFS+LLR  G   +  LG
Sbjct: 255 IRQKDTVSWNTMFSGFAHDEDDKAVFGYLIDMSRTGFKPNEVTFSVLLRLSGAKENASLG 314

Query: 367 LQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFN 426
           LQ+  LA   G+ D   V +++I M  RCG ++ A+  F +++++NI TWNE+++GY   
Sbjct: 315 LQIFALAYRHGYTDNVLVANAVINMLFRCGLLDRAYGFFCSLTFRNIVTWNEIIAGYGLF 374

Query: 427 CCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYIC 486
               D ++ F ++   G   +  T+  V+     +   +   QIH  I+K GF+SC ++ 
Sbjct: 375 SHSEDAMRLFRSLVCIGERPDEFTYSAVLSAFQEAHGARDHEQIHAIILKQGFASCQFVS 434

Query: 487 SSLIKS-YVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLV-EAG 544
           +SLIK+    FG + +S +    + ++++ SWGA++SA +  G N E + +F+    ++ 
Sbjct: 435 TSLIKANAAAFGSVQSSLKIIEDSGKMELVSWGAIISAFLKHGLNDEVIFLFNLFRGDST 494

Query: 545 EKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGAR 604
            KPDE+IL T+LN+CA     +  + IH  V+K G +    VASAV+DAYAKCG+I  A 
Sbjct: 495 NKPDEFILATVLNACANAALIRHCRCIHSLVLKTGHSNHFCVASAVVDAYAKCGEITSAE 554

Query: 605 MAFDQ-SFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSH 663
            AF   S  +ND I+YNT++ AYA+HGL+ EA+ ++++M  A L P+ ATFV+++SACSH
Sbjct: 555 SAFTAVSSATNDAIMYNTMLTAYANHGLIHEALNLYEEMTKAKLNPTPATFVAILSACSH 614

Query: 664 KGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYR 723
            GLV++G L F +M S YGM P+   Y CLVD+L+R G L++AK VI+ MPFQP P V+R
Sbjct: 615 LGLVEQGKLAFSTMLSAYGMHPARANYACLVDLLARKGLLDEAKGVIDAMPFQPWPAVWR 674

Query: 724 SLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLS 760
           SL++GCRIHGNK+LG  A+E++L + P +D A+V LS
Sbjct: 675 SLVNGCRIHGNKQLGVLAAEQILRMAPSSDGAYVSLS 711

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115486944|ref|NP_001065959.1| Os12g0109800 [Oryza sativa Japonica Group] gi|113648466|dbj|BAF28978.1| Os12g0109800 [Oryza sativa Japonica Group]

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 287/697 (41%), Positives = 438/697 (62%), Gaps = 8/697 (1%)

Query: 72  KLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLK 131
           KLG     F  N L   Y++ G     L+VFDEM  RNLVSWT +VSA+ +NG   +G +
Sbjct: 15  KLGTLAHTFNMNYLPIYYARRGLLDSALKVFDEMPHRNLVSWTAMVSASTRNGAPHLGFR 74

Query: 132 MYVDMKTNGFMPNEFAVGSVMKVCVSMGASE-----FGYSIHCFALKIRIEKNPFVGCSV 186
            +V M  +GF PNEF++ +++  C SM A          S+H  A++  ++ NPFVG S+
Sbjct: 75  FFVSMIRSGFCPNEFSLATMLTACHSMVAHSSNKLLIALSLHGVAVRAGLDSNPFVGSSL 134

Query: 187 LNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDK 246
           L  YAK G +AAA+R F  I + D+ CWNAM+ GY   G+G  A++ V  M   G+  D+
Sbjct: 135 LLMYAKHGRIAAAQRAFAHIRNKDLTCWNAMLEGYVSNGFGHHAISTVLVMHHSGLAPDR 194

Query: 247 YTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFER 306
           YT+I+A++ CS+ A + +GRQ+H L+I S +E + S++N+L+DMY ++   + A  VF +
Sbjct: 195 YTYISAVKACSISAQWGLGRQLHCLVIHSMLESNTSVMNSLVDMYFRARQKETAASVFRK 254

Query: 307 MADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLG 366
           +  KD +SWNT+F GF+ +++             +G +PN VTFS+LLR  G   +  LG
Sbjct: 255 IRQKDTVSWNTMFSGFAHDEDDKAVFGYLIDMSRTGFKPNEVTFSVLLRLSGAKENASLG 314

Query: 367 LQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFN 426
           LQ+  LA   G+ D   V +++I M  RCG ++ A+  F +++++NI TWNE+++GY   
Sbjct: 315 LQIFALAYRHGYTDNVLVANAVINMLFRCGLLDRAYGFFCSLTFRNIVTWNEIIAGYGLF 374

Query: 427 CCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYIC 486
               D ++ F ++   G   +  T+  V+     +   +   QIH  I+K GF+SC ++ 
Sbjct: 375 SHSEDAMRLFRSLVCIGERPDEFTYSAVLSAFQEAHGARDHEQIHAIILKQGFASCQFVS 434

Query: 487 SSLIKS-YVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLV-EAG 544
           +SLIK+    FG + +S +    + ++++ SWGA++SA +  G N E + +F+    ++ 
Sbjct: 435 TSLIKANAAAFGSVQSSLKIIEDSGKMELVSWGAIISAFLKHGLNDEVIFLFNLFRGDST 494

Query: 545 EKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGAR 604
            KPDE+IL T+LN+CA     +  + IH  V+K G +    VASAV+DAYAKCG+I  A 
Sbjct: 495 NKPDEFILATVLNACANAALIRHCRCIHSLVLKTGHSNHFCVASAVVDAYAKCGEITSAE 554

Query: 605 MAFDQ-SFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSH 663
            AF   S  +ND I+YNT++ AYA+HGL+ EA+ ++++M  A L P+ ATFV+++SACSH
Sbjct: 555 SAFTAVSSATNDAIMYNTMLTAYANHGLIHEALNLYEEMTKAKLNPTPATFVAILSACSH 614

Query: 664 KGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYR 723
            GLV++G L F +M S YGM P+   Y CLVD+L+R G L++AK VI+ MPFQP P V+R
Sbjct: 615 LGLVEQGKLAFSTMLSAYGMHPARANYACLVDLLARKGLLDEAKGVIDAMPFQPWPAVWR 674

Query: 724 SLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLS 760
           SL++GCRIHGNK+LG  A+E++L + P +D A+V LS
Sbjct: 675 SLVNGCRIHGNKQLGVLAAEQILRMAPSSDGAYVSLS 711

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297611068|ref|NP_001065556.2| Os11g0109800 [Oryza sativa Japonica Group] gi|77548352|gb|ABA91149.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group] gi|125533131|gb|EAY79679.1| hypothetical protein OsI_34825 [Oryza sativa Indica Group] gi|125575946|gb|EAZ17168.1| hypothetical protein OsJ_32674 [Oryza sativa Japonica Group] gi|255679705|dbj|BAF27401.2| Os11g0109800 [Oryza sativa Japonica Group]

 Score =  562 bits (1449), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 286/697 (41%), Positives = 435/697 (62%), Gaps = 8/697 (1%)

Query: 72  KLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLK 131
           KLG     F  N+L+  Y++ G     L+VFDEM +RNLVSWT +VSA+  NG   +G +
Sbjct: 17  KLGTLAHTFNMNHLLIYYARRGLLDSALKVFDEMPQRNLVSWTAMVSASTGNGAPHLGFR 76

Query: 132 MYVDMKTNGFMPNEFAVGSVMKVCVSMGASE-----FGYSIHCFALKIRIEKNPFVGCSV 186
            +V M  +GF PNEF++ +++  C SM A          S+H  A++  ++ NPFVG S+
Sbjct: 77  FFVSMIRSGFCPNEFSLATMLTACHSMVAHSSNKLLIALSLHGVAVRAGLDSNPFVGSSL 136

Query: 187 LNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDK 246
           L  YAK G +AAA+R F  I + D+ CWNAM+ GY   G+G  A+  V  M   G+  D+
Sbjct: 137 LLMYAKHGRIAAAQRAFAHIRNKDLTCWNAMLEGYVLNGFGHHAIRTVLLMHHSGLAPDR 196

Query: 247 YTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFER 306
           YT+I+A++ CS+ A +D+GRQ+H L+I S +E + S++N+L+DMY ++   + A  VF +
Sbjct: 197 YTYISAVKACSISAQWDLGRQLHCLVIHSMLESNTSVMNSLVDMYFRARQKETAASVFRK 256

Query: 307 MADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLG 366
           +  KD +SWNT+  GF+ +++              G +PN VTFS+LLR  G   +  LG
Sbjct: 257 IRQKDTVSWNTMISGFAHDEDDKAVFGCLIDMSRIGCKPNEVTFSVLLRLSGAKENESLG 316

Query: 367 LQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFN 426
           LQ+  LA   G+ D   V +++I M  RCG +  A+  F +++  NI TWNE+++GY   
Sbjct: 317 LQIVALAYRHGYTDNVLVANAVINMLSRCGLLNRAYGFFCSLTSTNIVTWNEMIAGYGLF 376

Query: 427 CCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYIC 486
               + +K F ++   G   +  T+  V+     ++  +   QIH  I+K GF+SC ++ 
Sbjct: 377 SHSEETMKLFRSLVCFGERPDEFTYSAVLSAFQEAQGARDHEQIHATILKQGFASCQFVS 436

Query: 487 SSLIKSYVN-FGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLV-EAG 544
           +SLIK+ V  FG +  S +    A ++++ SWG ++SA +  G N E + +F+    ++ 
Sbjct: 437 TSLIKANVAAFGSVQISLKIIEDAGKMELVSWGVVISAFLKHGLNDEVIFLFNLFRGDST 496

Query: 545 EKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGAR 604
            KPDE+IL T+LN+CA     +  + IH  V+K G +    VASAV+DAYAKCG+I  A 
Sbjct: 497 NKPDEFILATVLNACANAALIRHCRCIHSLVLKTGHSKHFCVASAVVDAYAKCGEITSAE 556

Query: 605 MAFDQ-SFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSH 663
            AF   S  ++D I+YNT++ AYA+HGL+ EA+ ++++M  A L P+ ATFV+++SACSH
Sbjct: 557 SAFTVVSSGTDDAILYNTMLTAYANHGLIHEALNLYEEMTKAKLSPTPATFVAILSACSH 616

Query: 664 KGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYR 723
            GLV++G L+F +M S YGM P+   Y CLVD+L+R G L++AK VI+ MPFQP P V+R
Sbjct: 617 LGLVEQGKLVFSTMLSAYGMHPARANYACLVDLLARKGLLDEAKGVIDAMPFQPWPAVWR 676

Query: 724 SLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLS 760
           SL+ GCRIHGNK+LG  A+E++L + P +D A++ LS
Sbjct: 677 SLVIGCRIHGNKQLGVLAAEQILRMAPSSDGAYISLS 713

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413915870|gb|AFW55802.1| hypothetical protein ZEAMMB73_686110 [Zea mays]

 Score =  553 bits (1425), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 293/707 (41%), Positives = 433/707 (61%), Gaps = 17/707 (2%)

Query: 63  GTQVHGHIVKLGFT-NDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAI 121
           G+Q+H   +KLG    D +  N L+  YSK G     L VFDE   RN V+WT IVSAA 
Sbjct: 77  GSQLHASGIKLGVVFADTYTSNQLLIHYSKRGQLASALDVFDETPSRNHVTWTAIVSAAA 136

Query: 122 QNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASE--FGYSIHCFALKIRIEKN 179
           + G   +GL+++  M  +GF PNEFA+ S +  C    A++   G S+H  A++  +  N
Sbjct: 137 RGGAPGLGLRLFASMLRSGFCPNEFALASALGACCQWVAADVKLGLSLHGLAVRAVLHGN 196

Query: 180 PFVGCSVLNFYAKLGDVAAAERVFYSISSD--DVGCWNAMIGGYAHCGYGFEALNVVSSM 237
           P+VG S++  YAK G VAAAERVF  I+S   DV CWNAM+ GY   G+G++A   V+ M
Sbjct: 197 PYVGSSLMLVYAKHGRVAAAERVFAGIASGSRDVACWNAMLEGYVANGHGYDATRTVALM 256

Query: 238 LFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECS-ISIVNALIDMYIKSSG 296
              GI  D +T+I+A +   +  D   GRQ+HGL++RS +E +  S++NAL+DMY K+  
Sbjct: 257 HGSGIAPDMFTYISAAKASWIARDLYFGRQVHGLVVRSVLESNNTSVMNALMDMYFKAGQ 316

Query: 297 MDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQ 356
            + A  +F ++  KD +SWNT+  G  + +     A  F      G R N VTFS++LR 
Sbjct: 317 KETAADIFGKIRWKDTVSWNTMISGLEDER---AAADCFVDMARCGCRSNQVTFSVMLRL 373

Query: 357 CGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTW 416
            G      LGLQ+  LA   G+ D   V ++ I M  RCG +  A+  F ++  +N+ TW
Sbjct: 374 SGA----SLGLQIFGLAYRHGYSDNVLVANAAINMLSRCGLLSCAYGYFCDLGVRNVVTW 429

Query: 417 NELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIK 476
           NE+++GY  + C  D ++ F ++   G   +  T+  V+    +  + +   Q+H +++K
Sbjct: 430 NEMIAGYGLHGCSGDAMRLFRSLVCFGARPDEFTYPAVLSAFQQDHDARNHEQVHASVLK 489

Query: 477 TGFSSCGYICSSLIKSYVNFGQ-LDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVT 535
            GF+SC ++ +SLIK+    G  +    +    A  +D+ SWG  +SA V  G   EA++
Sbjct: 490 QGFASCQFVSTSLIKAKAALGSSVLGPLKIIQDAGEMDLVSWGVAISAFVKHGLGQEALS 549

Query: 536 IFHS-LVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAY 594
           +F+S  V+  EKPDE+ILGTILN+CA     ++ + IH  V++ G +  + V+SA++DAY
Sbjct: 550 LFNSCRVDCPEKPDEFILGTILNACANAALIRQCRCIHSLVVRTGHSKHLCVSSALVDAY 609

Query: 595 AKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQ-PSQAT 653
           AKCGDI  A+ AF  + ++ D IVYNT++ AYA+HGL+ E + ++ +M    L  P+ AT
Sbjct: 610 AKCGDITAAKGAF-ATVSTKDAIVYNTMLTAYANHGLIREVLSLYQEMTQLQLAAPTPAT 668

Query: 654 FVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM 713
           FV+ +SACSH GLV++G LLF SM S +GM P+   Y CL+D+L+R G LE+A  VI+ M
Sbjct: 669 FVAAISACSHLGLVEQGKLLFSSMLSAHGMNPTRANYACLIDLLARRGLLEEATGVIQAM 728

Query: 714 PFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLS 760
           PFQP P V+RSL++GCRIHGNKELG  ASE++L + P +D A+V LS
Sbjct: 729 PFQPWPAVWRSLMNGCRIHGNKELGLLASEQILRMAPNSDGAYVSLS 775

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	796
TAIR|locus:2095289	1028	AT3G09040 "AT3G09040" [Arabido	0.846	0.655	0.310	1.5e-102
TAIR|locus:2122551	834	AT4G39530 [Arabidopsis thalian	0.870	0.830	0.305	3e-94
TAIR|locus:2119440	1064	AT4G13650 [Arabidopsis thalian	0.873	0.653	0.294	7.8e-94
TAIR|locus:2141171	857	AT4G21300 [Arabidopsis thalian	0.933	0.866	0.282	4.4e-90
TAIR|locus:2176927	893	AT5G52850 [Arabidopsis thalian	0.886	0.790	0.276	9.9e-87
TAIR|locus:2032840	937	AT1G16480 "AT1G16480" [Arabido	0.909	0.772	0.281	2.1e-84
TAIR|locus:2103483	890	OTP84 "ORGANELLE TRANSCRIPT PR	0.806	0.721	0.304	1.5e-83
TAIR|locus:2019130	895	OTP87 "organelle transcript pr	0.930	0.827	0.272	6.6e-81
TAIR|locus:505006130	970	AT1G18485 [Arabidopsis thalian	0.922	0.756	0.260	8.5e-81
TAIR|locus:2058812	613	AT2G02750 [Arabidopsis thalian	0.342	0.445	0.372	2.9e-80

TAIR|locus:2095289 AT3G09040 "AT3G09040" [Arabidopsis thaliana (taxid:3702)]

 Score = 976 (348.6 bits), Expect = 1.5e-102, Sum P(2) = 1.5e-102
 Identities = 211/679 (31%), Positives = 362/679 (53%)

Query:    85 LIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPN 144
             +I  Y + G       +F EM+  ++V+W +++S   + G   + ++ + +M+ +     
Sbjct:   267 VINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKST 326

Query:   145 EFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFY 204
                +GSV+     +   + G  +H  A+K+ +  N +VG S+++ Y+K   + AA +VF 
Sbjct:   327 RSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFE 386

Query:   205 SISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDI 264
             ++   +   WNAMI GYAH G   + + +   M   G  +D +TF + L  C+   D ++
Sbjct:   387 ALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEM 446

Query:   265 GRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSE 324
             G Q H +II+ ++  ++ + NAL+DMY K   ++ A ++FERM D+D ++WNT+ G + +
Sbjct:   447 GSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQ 506

Query:   325 NKNPGQTASLFHKFILSGSRPNHVTFSILLRXXXXXXXXXXXXXXXXXXXXXXFLDEENV 384
             ++N  +   LF +  L G   +    +  L+                       LD +  
Sbjct:   507 DENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCG-LDRDLH 565

Query:   385 T-SSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESG 443
             T SSLI M+ +CG ++ A  VF ++   ++ + N L++GY  N  +  V+  F  +   G
Sbjct:   566 TGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQNNLEEAVV-LFQEMLTRG 624

Query:   444 VEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCG-YICSSLIKSYVNF-GQLDN 501
             V  +  TF  +VE C + E+  +  Q HG I K GFSS G Y+  SL+  Y+N  G  + 
Sbjct:   625 VNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEA 684

Query:   502 SFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAA 561
                FS  +    +  W  MMS     G   EA+  +  +   G  PD+    T+L  C+ 
Sbjct:   685 CALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSV 744

Query:   562 IGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNT 621
             + + +  ++IH  +  L  + +   ++ +ID YAKCGD+KG+   FD+    ++V+ +N+
Sbjct:   745 LSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNS 804

Query:   622 LIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQY 681
             LI  YA +G   +A++IFD M+ +++ P + TF+ V++ACSH G V  G  +F+ M  QY
Sbjct:   805 LINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQY 864

Query:   682 GMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWA 741
             G++   D   C+VD+L R GYL++A   IE    +P   ++ SLL  CRIHG+   GE +
Sbjct:   865 GIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDIRGEIS 924

Query:   742 SEKLLLLLPKNDAAHVLLS 760
             +EKL+ L P+N +A+VLLS
Sbjct:   925 AEKLIELEPQNSSAYVLLS 943

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2122551 AT4G39530 [Arabidopsis thaliana (taxid:3702)]

 Score = 938 (335.3 bits), Expect = 3.0e-94, P = 3.0e-94
 Identities = 214/701 (30%), Positives = 363/701 (51%)

Query:    66 VHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGE 125
             VHG I+  G   D +L N LI +YS+ G   +  +VF++M ERNLVSW+ +VSA   +G 
Sbjct:    66 VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGI 125

Query:   126 FDMGLKMYVDM-KTNGFMPNEFAVGSVMKVCVSM-GASEFG-YSIHCFALKIRIEKNPFV 182
             ++  L ++++  +T    PNE+ + S ++ C  + G   +  + +  F +K   +++ +V
Sbjct:   126 YEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYV 185

Query:   183 GCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGI 242
             G  +++FY K G++  A  VF ++       W  MI G    G  + +L +   ++ + +
Sbjct:   186 GTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNV 245

Query:   243 TMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFK 302
               D Y     L  CS++   + G+QIH  I+R  +E   S++N LID Y+K   +  A K
Sbjct:   246 VPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHK 305

Query:   303 VFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRXXXXXXX 362
             +F  M +K++ISW TL  G+ +N    +   LF      G +P+    S +L        
Sbjct:   306 LFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHA 365

Query:   363 XXXXXXXXXXXXXXXFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSG 422
                              ++  VT+SLI M+ +C  +  A  VFD  +  ++  +N ++ G
Sbjct:   366 LGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEG 425

Query:   423 YCFNCCDADV---LKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGF 479
             Y       ++   L  F ++    +  +  TF  ++       +  +  QIHG + K G 
Sbjct:   426 YSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGL 485

Query:   480 SSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHS 539
             +   +  S+LI  Y N   L +S    +  +  D+  W +M +  V Q  N EA+ +F  
Sbjct:   486 NLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLE 545

Query:   540 LVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGD 599
             L  + E+PDE+    ++ +   + + Q  +  H  ++K G     Y+ +A++D YAKCG 
Sbjct:   546 LQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGS 605

Query:   600 IKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMS 659
              + A  AFD S  S DV+ +N++I +YA+HG   +A+++ +KM    ++P+  TFV V+S
Sbjct:   606 PEDAHKAFD-SAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLS 664

Query:   660 ACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSP 719
             ACSH GLV+ G   F+ M  ++G++P  + Y C+V +L R G L  A+ +IE MP +P+ 
Sbjct:   665 ACSHAGLVEDGLKQFELM-LRFGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAA 723

Query:   720 TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLS 760
              V+RSLLSGC   GN EL E A+E  +L  PK+  +  +LS
Sbjct:   724 IVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLS 764

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)]

 Score = 934 (333.8 bits), Expect = 7.8e-94, P = 7.8e-94
 Identities = 205/696 (29%), Positives = 352/696 (50%)

Query:    65 QVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNG 124
             Q+H  I+  G  +   + N LI +YS+ G+     RVFD +  ++  SW  ++S   +N 
Sbjct:   208 QIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNE 267

Query:   125 EFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGC 184
                  ++++ DM   G MP  +A  SV+  C  + + E G  +H   LK+    + +V  
Sbjct:   268 CEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCN 327

Query:   185 SVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITM 244
             ++++ Y  LG++ +AE +F ++S  D   +N +I G + CGYG +A+ +   M  +G+  
Sbjct:   328 ALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEP 387

Query:   245 DKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVF 304
             D  T  + +  CS       G+Q+H    +     +  I  AL+++Y K + ++ A   F
Sbjct:   388 DSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYF 447

Query:   305 ERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRXXXXXXXXX 364
                  ++V+ WN +   +    +   +  +F +  +    PN  T+  +L+         
Sbjct:   448 LETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLE 507

Query:   365 XXXXXXXXXXXXXFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYC 424
                          F     V S LI M+ + G ++ A  +    + K++ +W  +++GY 
Sbjct:   508 LGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYT 567

Query:   425 FNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGY 484
                 D   L TF  + + G+  +       V  C   +  +   QIH     +GFSS   
Sbjct:   568 QYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLP 627

Query:   485 ICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAG 544
               ++L+  Y   G+++ S+      E  D  +W A++S     G+N EA+ +F  +   G
Sbjct:   628 FQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREG 687

Query:   545 EKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGAR 604
                + +  G+ + + +     ++ K +H  + K G+++E  V +A+I  YAKCG I  A 
Sbjct:   688 IDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAE 747

Query:   605 MAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHK 664
               F +    N+V  +N +I AY+ HG  SEA++ FD+M  +N++P+  T V V+SACSH 
Sbjct:   748 KQFLEVSTKNEVS-WNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHI 806

Query:   665 GLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRS 724
             GLVDKG   F+SM+S+YG+ P P+ Y C+VDML+R G L  AK  I+ MP +P   V+R+
Sbjct:   807 GLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRT 866

Query:   725 LLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLS 760
             LLS C +H N E+GE+A+  LL L P++ A +VLLS
Sbjct:   867 LLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLS 902

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2141171 AT4G21300 [Arabidopsis thaliana (taxid:3702)]

 Score = 881 (315.2 bits), Expect = 4.4e-90, Sum P(2) = 4.4e-90
 Identities = 213/754 (28%), Positives = 369/754 (48%)

Query:    36 SDSFLRKD-PIFLAKSLSLSENLKSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGY 94
             S  FL +  P  L+  L    N      G QVH  ++    + D +    ++ MY+ CG 
Sbjct:    26 SSRFLEETIPRRLSLLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGS 85

Query:    95 FGWGLRVFDEMAER--NLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVM 152
             F    ++F  +  R  ++  W  I+S+ ++NG  +  L  Y  M   G  P+      ++
Sbjct:    86 FSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLV 145

Query:   153 KVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVG 212
             K CV++   +    +      + ++ N FV  S++  Y + G +    ++F  +   D  
Sbjct:   146 KACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCV 205

Query:   213 CWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLI 272
              WN M+ GYA CG     +   S M  + I+ +  TF   L  C+     D+G Q+HGL+
Sbjct:   206 IWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLV 265

Query:   273 IRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTA 332
             + S V+   SI N+L+ MY K    D A K+F  M+  D ++WN +  G+ ++    ++ 
Sbjct:   266 VVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESL 325

Query:   333 SLFHKFILSGSRPNHVTFSILLRXXXXXXXXXXXXXXXXXXXXXXFLDEENVTSSLIYMF 392
             + F++ I SG  P+ +TFS LL                          +  +TS+LI  +
Sbjct:   326 TFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAY 385

Query:   393 CRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFF 452
              +C  V MA ++F   +  ++  +  ++SGY  N    D L+ F  + +  +  N  T  
Sbjct:   386 FKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLV 445

Query:   453 YVVETCCRSENQQMVGQIHGAIIKTGFSS-CGYICSSLIKSYVNFGQLDNSFEFSNGAER 511
              ++         ++  ++HG IIK GF + C   C+ +I  Y   G+++ ++E      +
Sbjct:   446 SILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCA-VIDMYAKCGRMNLAYEIFERLSK 504

Query:   512 LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSI 571
              D+ SW +M++      +   A+ IF  +  +G   D   +   L++CA + +    K+I
Sbjct:   505 RDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAI 564

Query:   572 HPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGL 631
             H F+IK    ++VY  S +ID YAKCG++K A   F ++    +++ +N++I A  +HG 
Sbjct:   565 HGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVF-KTMKEKNIVSWNSIIAACGNHGK 623

Query:   632 VSEAMEIFDKM-KLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCY 690
             + +++ +F +M + + ++P Q TF+ ++S+C H G VD+G   F+SM   YG+QP  + Y
Sbjct:   624 LKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHY 683

Query:   691 GCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLP 750
              C+VD+  R G L +A   ++ MPF P   V+ +LL  CR+H N EL E AS KL+ L P
Sbjct:   684 ACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDP 743

Query:   751 KNDAAHVLLSKRKRQREGNLLDHEGVCNVNDGIK 784
              N   +VL+S        N  + E V  V   +K
Sbjct:   744 SNSGYYVLISNA----HANAREWESVTKVRSLMK 773

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2176927 AT5G52850 [Arabidopsis thaliana (taxid:3702)]

 Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
 Identities = 197/712 (27%), Positives = 358/712 (50%)

Query:    51 LSLSENLKSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLR-VFDEMAERN 109
             LS  E+  SR+ G  +H  ++K G   ++ L NNL+++Y K     W  R +FDEM+ R 
Sbjct:    31 LSFCESNSSRI-GLHIHCPVIKFGLLENLDLCNNLLSLYLKTDGI-WNARKLFDEMSHRT 88

Query:   110 LVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHC 169
             + +WT+++SA  ++ EF   L ++ +M  +G  PNEF   SV++ C  +    +G  +H 
Sbjct:    89 VFAWTVMISAFTKSQEFASALSLFEEMMASGTHPNEFTFSSVVRSCAGLRDISYGGRVHG 148

Query:   170 FALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFE 229
               +K   E N  VG S+ + Y+K G    A  +F S+ + D   W  MI          E
Sbjct:   149 SVIKTGFEGNSVVGSSLSDLYSKCGQFKEACELFSSLQNADTISWTMMISSLVGARKWRE 208

Query:   230 ALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALID 289
             AL   S M+  G+  +++TF+  L G S     + G+ IH  II   +  ++ +  +L+D
Sbjct:   209 ALQFYSEMVKAGVPPNEFTFVKLL-GASSFLGLEFGKTIHSNIIVRGIPLNVVLKTSLVD 267

Query:   290 MYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVT 349
              Y + S M+ A +V     ++DV  W ++  GF  N    +    F +    G +PN+ T
Sbjct:   268 FYSQFSKMEDAVRVLNSSGEQDVFLWTSVVSGFVRNLRAKEAVGTFLEMRSLGLQPNNFT 327

Query:   350 FSILLRXXXXXXXXXXXXXXXXXXXXXXFLDEENVTSSLIYMFCRCGAVEM-AHSVFDNV 408
             +S +L                       F D  +V ++L+ M+ +C A E+ A  VF  +
Sbjct:   328 YSAILSLCSAVRSLDFGKQIHSQTIKVGFEDSTDVGNALVDMYMKCSASEVEASRVFGAM 387

Query:   409 SYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVG 468
                N+ +W  L+ G   +    D       + +  VE N  T   V+  C +  + + V 
Sbjct:   388 VSPNVVSWTTLILGLVDHGFVQDCFGLLMEMVKREVEPNVVTLSGVLRACSKLRHVRRVL 447

Query:   469 QIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQG 528
             +IH  +++        + +SL+ +Y +  ++D ++      +R D  ++ ++++     G
Sbjct:   448 EIHAYLLRRHVDGEMVVGNSLVDAYASSRKVDYAWNVIRSMKRRDNITYTSLVTRFNELG 507

Query:   529 HNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVAS 588
              +  A+++ + +   G + D+  L   +++ A +GA +  K +H + +K GF+    V +
Sbjct:   508 KHEMALSVINYMYGDGIRMDQLSLPGFISASANLGALETGKHLHCYSVKSGFSGAASVLN 567

Query:   589 AVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQ 648
             +++D Y+KCG ++ A+  F++   + DV+ +N L+   A +G +S A+  F++M++   +
Sbjct:   568 SLVDMYSKCGSLEDAKKVFEE-IATPDVVSWNGLVSGLASNGFISSALSAFEEMRMKETE 626

Query:   649 PSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKH 708
             P   TF+ ++SACS+  L D G   F+ M   Y ++P  + Y  LV +L R G LE+A  
Sbjct:   627 PDSVTFLILLSACSNGRLTDLGLEYFQVMKKIYNIEPQVEHYVHLVGILGRAGRLEEATG 686

Query:   709 VIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLS 760
             V+E M  +P+  ++++LL  CR  GN  LGE  + K L L P + A ++LL+
Sbjct:   687 VVETMHLKPNAMIFKTLLRACRYRGNLSLGEDMANKGLALAPSDPALYILLA 738

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2032840 AT1G16480 "AT1G16480" [Arabidopsis thaliana (taxid:3702)]

 Score = 845 (302.5 bits), Expect = 2.1e-84, P = 2.1e-84
 Identities = 205/728 (28%), Positives = 342/728 (46%)

Query:    63 GTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQ 122
             G QVHG + K G  +D+++   ++ +Y   G      +VF+EM +RN+VSWT ++     
Sbjct:    78 GVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSD 137

Query:   123 NGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFV 182
              GE +  + +Y  M+  G   NE ++  V+  C  +     G  I    +K  +E    V
Sbjct:   138 KGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAV 197

Query:   183 GCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGI 242
               S+++    +G+V  A  +F  +S  D   WN++   YA  G+  E+  + S M     
Sbjct:   198 ENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHD 257

Query:   243 TMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFK 302
              ++  T    L     V     GR IHGL+++   +  + + N L+ MY  +     A  
Sbjct:   258 EVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANL 317

Query:   303 VFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRXXXXXXX 362
             VF++M  KD+ISWN+L   F  +        L    I SG   N+VTF+  L        
Sbjct:   318 VFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDF 377

Query:   363 XXXXXXXXXXXXXXXFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSG 422
                                + + ++L+ M+ + G +  +  V   +  +++  WN L+ G
Sbjct:   378 FEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGG 437

Query:   423 YCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQ-IHGAIIKTGFSS 481
             Y  +      L  F  +   GV  N  T   V+  C    +    G+ +H  I+  GF S
Sbjct:   438 YAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFES 497

Query:   482 CGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLV 541
               ++ +SLI  Y   G L +S +  NG +  ++ +W AM++A  H GH  E + +   + 
Sbjct:   498 DEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMR 557

Query:   542 EAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIK 601
               G   D++     L++ A +   +  + +H   +KLGF  + ++ +A  D Y+KCG+I 
Sbjct:   558 SFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIG 617

Query:   602 GARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSAC 661
                     S N + +  +N LI A   HG   E    F +M    ++P   TFVS+++AC
Sbjct:   618 EVVKMLPPSVNRS-LPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTAC 676

Query:   662 SHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTV 721
             SH GLVDKG   +  +   +G++P+ +   C++D+L R+G L +A+  I  MP +P+  V
Sbjct:   677 SHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLV 736

Query:   722 YRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSKRKRQREGNLLDHEGVCNVND 781
             +RSLL+ C+IHGN + G  A+E L  L P++D+ +VL S       G   D E V     
Sbjct:   737 WRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVL-SSNMFATTGRWEDVENV-RKQM 794

Query:   782 GIKTVDLK 789
             G K +  K
Sbjct:   795 GFKNIKKK 802

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)]

 Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
 Identities = 203/667 (30%), Positives = 328/667 (49%)

Query:   113 WTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFAL 172
             W  ++ + +++      +  YVDM   G  P+ +A  +++K    +   E G  IH    
Sbjct:    65 WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query:   173 KIRIEKNPF-VGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYG-FE- 229
             K     +   V  +++N Y K GD  A  +VF  IS  +   WN++I     C +  +E 
Sbjct:   125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSL--CSFEKWEM 182

Query:   230 ALNVVSSMLFEGITMDKYTFINALQGCS---LVADFDIGRQIHGLIIRSEVECSISIVNA 286
             AL     ML E +    +T ++ +  CS   +     +G+Q+H   +R   E +  I+N 
Sbjct:   183 ALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINT 241

Query:   287 LIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPN 346
             L+ MY K   +  +  +      +D+++WNT+     +N+   +      + +L G  P+
Sbjct:   242 LVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPD 301

Query:   347 HVTFSILLRXXXXXXXXXXXXXXXXXXXXXXFLDEEN-VTSSLIYMFCRCGAVEMAHSVF 405
               T S +L                        LDE + V S+L+ M+C C  V     VF
Sbjct:   302 EFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVF 361

Query:   406 DNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWES-GVEVNGCTFFYVVETCCRSENQ 464
             D +  + I  WN +++GY  N  D + L  F  + ES G+  N  T   VV  C RS   
Sbjct:   362 DGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAF 421

Query:   465 QMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSAL 524
                  IHG ++K G     ++ ++L+  Y   G++D +       E  D+ +W  M++  
Sbjct:   422 SRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGY 481

Query:   525 VHQGHNHEAVTIFHSL------VEAGE-----KPDEYILGTILNSCAAIGAYQRTKSIHP 573
             V   H+ +A+ + H +      V  G      KP+   L TIL SCAA+ A  + K IH 
Sbjct:   482 VFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHA 541

Query:   574 FVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVS 633
             + IK    T+V V SA++D YAKCG ++ +R  FDQ    N VI +N +IMAY  HG   
Sbjct:   542 YAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKN-VITWNVIIMAYGMHGNGQ 600

Query:   634 EAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCL 693
             EA+++   M +  ++P++ TF+SV +ACSH G+VD+G  +F  M   YG++PS D Y C+
Sbjct:   601 EAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACV 660

Query:   694 VDMLSRNGYLEDAKHVIEIMPFQPSPT-VYRSLLSGCRIHGNKELGEWASEKLLLLLPKN 752
             VD+L R G +++A  ++ +MP   +    + SLL   RIH N E+GE A++ L+ L P N
Sbjct:   661 VDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEP-N 719

Query:   753 DAAHVLL 759
              A+H +L
Sbjct:   720 VASHYVL 726

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031425 "chloroplast RNA processing" evidence=IMP

TAIR|locus:2019130 OTP87 "organelle transcript processing 87" [Arabidopsis thaliana (taxid:3702)]

 Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
 Identities = 206/757 (27%), Positives = 357/757 (47%)

Query:    12 DKPSCHFHATRKRIHRLCGNN-QFCSDS-FL--RKDPIFLAKSLSLSENLKSRVLGTQVH 67
             D  SC+   +  + HRL   + +F S   FL    + I     +S    L++ +    V 
Sbjct:   114 DVVSCNIMISGYKQHRLFEESLRFFSKMHFLGFEANEISYGSVISACSALQAPLFSELVC 173

Query:    68 GHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFD 127
              H +K+G+     +++ LI ++SK   F    +VF +    N+  W  I++ A++N  + 
Sbjct:   174 CHTIKMGYFFYEVVESALIDVFSKNLRFEDAYKVFRDSLSANVYCWNTIIAGALRNQNYG 233

Query:   128 MGLKMYVDMKTNGFM-PNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSV 186
                 ++ +M   GF  P+ +   SV+  C S+    FG  +    +K   E + FV  ++
Sbjct:   234 AVFDLFHEMCV-GFQKPDSYTYSSVLAACASLEKLRFGKVVQARVIKCGAE-DVFVCTAI 291

Query:   187 LNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDK 246
             ++ YAK G +A A  VF  I +  V  W  M+ GY      F AL +   M   G+ ++ 
Sbjct:   292 VDLYAKCGHMAEAMEVFSRIPNPSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINN 351

Query:   247 YTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFER 306
              T  + +  C   +      Q+H  + +S      S+  ALI MY KS  +D + +VFE 
Sbjct:   352 CTVTSVISACGRPSMVCEASQVHAWVFKSGFYLDSSVAAALISMYSKSGDIDLSEQVFED 411

Query:   307 MAD---KDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRXXXXXXXX 363
             + D   ++++  N +   FS++K PG+   LF + +  G R +   FS+           
Sbjct:   412 LDDIQRQNIV--NVMITSFSQSKKPGKAIRLFTRMLQEGLRTDE--FSVCSLLSVLDCLN 467

Query:   364 XXXXXXXXXXXXXXFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGY 423
                            LD   V SSL  ++ +CG++E ++ +F  + +K+   W  ++SG+
Sbjct:   468 LGKQVHGYTLKSGLVLDL-TVGSSLFTLYSKCGSLEESYKLFQGIPFKDNACWASMISGF 526

Query:   424 CFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCG 483
                    + +  F  + + G   +  T   V+  C    +     +IHG  ++ G     
Sbjct:   527 NEYGYLREAIGLFSEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTLRAGIDKGM 586

Query:   484 YICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEA 543
              + S+L+  Y   G L  + +  +    LD  S  +++S     G   +   +F  +V +
Sbjct:   587 DLGSALVNMYSKCGSLKLARQVYDRLPELDPVSCSSLISGYSQHGLIQDGFLLFRDMVMS 646

Query:   544 GEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGA 603
             G   D + + +IL + A          +H ++ K+G  TE  V S+++  Y+K G I   
Sbjct:   647 GFTMDSFAISSILKAAALSDESSLGAQVHAYITKIGLCTEPSVGSSLLTMYSKFGSIDDC 706

Query:   604 RMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSH 663
               AF Q  N  D+I +  LI +YA HG  +EA+++++ MK    +P + TFV V+SACSH
Sbjct:   707 CKAFSQ-INGPDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSACSH 765

Query:   664 KGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYR 723
              GLV++      SM   YG++P    Y C+VD L R+G L +A+  I  M  +P   V+ 
Sbjct:   766 GGLVEESYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAESFINNMHIKPDALVWG 825

Query:   724 SLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLS 760
             +LL+ C+IHG  ELG+ A++K + L P +  A++ LS
Sbjct:   826 TLLAACKIHGEVELGKVAAKKAIELEPSDAGAYISLS 862

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0080156 "mitochondrial mRNA modification" evidence=IMP

TAIR|locus:505006130 AT1G18485 [Arabidopsis thaliana (taxid:3702)]

 Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
 Identities = 195/749 (26%), Positives = 362/749 (48%)

Query:    23 KRIHRLCGNNQFCSDSFLRKDPIFLAKSLSLSENLKSRVLGTQVHGHIVKLGFT---NDI 79
             + +    G+++  SD+FL      L   L  S   K   +G ++H  +V  G T   ND 
Sbjct:    64 RTVQEFVGDDESSSDAFLLVREA-LGLLLQASGKRKDIEMGRKIH-QLVS-GSTRLRNDD 120

Query:    80 FLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLKMYVDM-KT 138
              L   +I MY+ CG       VFD +  +NL  W  ++S+  +N  +D  L+ +++M  T
Sbjct:   121 VLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMIST 180

Query:   139 NGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAA 198
                +P+ F    V+K C  M     G ++H   +K  + ++ FVG ++++FY   G V  
Sbjct:   181 TDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTD 240

Query:   199 AERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFE---GITM-DKYTFINALQ 254
             A ++F  +   ++  WN+MI  ++  G+  E+  ++  M+ E   G  M D  T +  L 
Sbjct:   241 ALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLP 300

Query:   255 GCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVIS 314
              C+   +  +G+ +HG  ++  ++  + + NAL+DMY K   +  A  +F+   +K+V+S
Sbjct:   301 VCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVS 360

Query:   315 WNTLFGGFSENKNPGQTASLFHKFILSGS--RPNHVTFSILLRXXXXXXXXXXXXXXXXX 372
             WNT+ GGFS   +   T  +  + +  G   + + VT    +                  
Sbjct:   361 WNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCY 420

Query:   373 XXXXXFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADV 432
                  F+  E V ++ +  + +CG++  A  VF  +  K + +WN L+ G+  +      
Sbjct:   421 SLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLS 480

Query:   433 LKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKS 492
             L     +  SG+  +  T   ++  C + ++ ++  ++HG II+       ++  S++  
Sbjct:   481 LDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSL 540

Query:   493 YVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYIL 552
             Y++ G+L       +  E   + SW  +++  +  G    A+ +F  +V  G +     +
Sbjct:   541 YIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISM 600

Query:   553 GTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFN 612
               +  +C+ + + +  +  H + +K     + ++A ++ID YAK G I  +   F+    
Sbjct:   601 MPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFN-GLK 659

Query:   613 SNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCL 672
                   +N +IM Y  HGL  EA+++F++M+     P   TF+ V++AC+H GL+ +G  
Sbjct:   660 EKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLR 719

Query:   673 LFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVI-EIMPFQPSPTVYRSLLSGCRI 731
                 M S +G++P+   Y C++DML R G L+ A  V+ E M  +    +++SLLS CRI
Sbjct:   720 YLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRI 779

Query:   732 HGNKELGEWASEKLLLLLPKNDAAHVLLS 760
             H N E+GE  + KL  L P+    +VLLS
Sbjct:   780 HQNLEMGEKVAAKLFELEPEKPENYVLLS 808

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2058812 AT2G02750 [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 2.9e-80, Sum P(2) = 2.9e-80
 Identities = 104/279 (37%), Positives = 158/279 (56%)

Query:   487 SSLIKSYVNFGQLDNSFE-FSN-GAERL--DMASWGAMMSALVHQGHNHEAVTIFHSLVE 542
             +S+I   +  GQ + + E F    +E L  D A+W +++S     G   EA   F  ++ 
Sbjct:   302 NSVISGMMINGQHETAVELFEKLDSEGLKPDSATWNSLISGFSQLGKVIEAFKFFERMLS 361

Query:   543 AGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKG 602
                 P    L ++L++C+ I   +  K IH  VIK     +++V +++ID Y KCG    
Sbjct:   362 VVMVPSLKCLTSLLSACSDIWTLKNGKEIHGHVIKAAAERDIFVLTSLIDMYMKCGLSSW 421

Query:   603 ARMAFDQ-SFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSAC 661
             AR  FD+      D + +N +I  Y  HG    A+EIF+ ++   ++PS ATF +V+SAC
Sbjct:   422 ARRIFDRFEPKPKDPVFWNVMISGYGKHGECESAIEIFELLREEKVEPSLATFTAVLSAC 481

Query:   662 SHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTV 721
             SH G V+KG  +F+ M  +YG +PS +  GC++D+L R+G L +AK VI+ M  +PS +V
Sbjct:   482 SHCGNVEKGSQIFRLMQEEYGYKPSTEHIGCMIDLLGRSGRLREAKEVIDQMS-EPSSSV 540

Query:   722 YRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLS 760
             Y SLL  CR H +  LGE A+ KL  L P+N A  V+LS
Sbjct:   541 YSSLLGSCRQHLDPVLGEEAAMKLAELEPENPAPFVILS 579

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_IX001291 hypothetical protein (805 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	796
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-109
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	5e-72
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	4e-59
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	3e-52
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	3e-36
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	3e-29
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	6e-26
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	4e-12
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	3e-11
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	6e-11
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-10
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	5e-09
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	1e-08
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	9e-07
pfam01535	31	pfam01535, PPR, PPR repeat	1e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-05
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-05
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	1e-04
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.002
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	0.003
pfam13041	50	pfam13041, PPR_2, PPR repeat family	0.003
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.003

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  353 bits (907), Expect = e-109
 Identities = 194/639 (30%), Positives = 328/639 (51%), Gaps = 7/639 (1%)

Query: 123 NGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFV 182
           +G+ +  LK+   M+      +E A  ++ ++C    A E G  +   AL         +
Sbjct: 64  HGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRL 123

Query: 183 GCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGI 242
           G ++L+ + + G++  A  VF  +   D+  WN ++GGYA  GY  EAL +   ML+ G+
Sbjct: 124 GNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV 183

Query: 243 TMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFK 302
             D YTF   L+ C  + D   GR++H  ++R   E  + +VNALI MY+K   +  A  
Sbjct: 184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARL 243

Query: 303 VFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLD 362
           VF+RM  +D ISWN +  G+ EN    +   LF         P+ +T + ++  C  L D
Sbjct: 244 VFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303

Query: 363 LDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSG 422
             LG ++    +  GF  + +V +SLI M+   G+   A  VF  +  K+  +W  ++SG
Sbjct: 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISG 363

Query: 423 YCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSC 482
           Y  N      L+T+  + +  V  +  T   V+  C    +  +  ++H    + G  S 
Sbjct: 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISY 423

Query: 483 GYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVE 542
             + ++LI+ Y     +D + E  +     D+ SW ++++ L       EA+  F  ++ 
Sbjct: 424 VVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML- 482

Query: 543 AGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKG 602
              KP+   L   L++CA IGA    K IH  V++ G   + ++ +A++D Y +CG +  
Sbjct: 483 LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM-- 540

Query: 603 ARMAFDQSFNSN--DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSA 660
              A++Q FNS+  DV+ +N L+  Y  HG  S A+E+F++M  + + P + TF+S++ A
Sbjct: 541 -NYAWNQ-FNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA 598

Query: 661 CSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPT 720
           CS  G+V +G   F SM+ +Y + P+   Y C+VD+L R G L +A + I  MP  P P 
Sbjct: 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPA 658

Query: 721 VYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLL 759
           V+ +LL+ CRIH + ELGE A++ +  L P +   ++LL
Sbjct: 659 VWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILL 697

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  252 bits (645), Expect = 5e-72
 Identities = 149/563 (26%), Positives = 264/563 (46%), Gaps = 13/563 (2%)

Query: 11  ADKPSCHFHATRKRIHRLCGNNQFC-------SDSFLRKDP---IFLAKSLSLSENLKSR 60
           A   S   H +  ++  LC + Q         S   LR       ++A    L E  ++ 
Sbjct: 44  AASSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVAL-FRLCEWKRAV 102

Query: 61  VLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAA 120
             G++V    +    +  + L N +++M+ + G       VF +M ER+L SW ++V   
Sbjct: 103 EEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGY 162

Query: 121 IQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNP 180
            + G FD  L +Y  M   G  P+ +    V++ C  +     G  +H   ++   E + 
Sbjct: 163 AKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDV 222

Query: 181 FVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFE 240
            V  +++  Y K GDV +A  VF  +   D   WNAMI GY   G   E L +  +M   
Sbjct: 223 DVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL 282

Query: 241 GITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYA 300
            +  D  T  + +  C L+ D  +GR++HG ++++     +S+ N+LI MY+       A
Sbjct: 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA 342

Query: 301 FKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKL 360
            KVF RM  KD +SW  +  G+ +N  P +    +         P+ +T + +L  C  L
Sbjct: 343 EKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL 402

Query: 361 LDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELL 420
            DLD+G++L  LA   G +    V ++LI M+ +C  ++ A  VF N+  K++ +W  ++
Sbjct: 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSII 462

Query: 421 SGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFS 480
           +G   N    + L  F  +  + ++ N  T    +  C R        +IH  +++TG  
Sbjct: 463 AGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG 521

Query: 481 SCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSL 540
             G++ ++L+  YV  G+++ ++   N  E+ D+ SW  +++  V  G    AV +F+ +
Sbjct: 522 FDGFLPNALLDLYVRCGRMNYAWNQFNSHEK-DVVSWNILLTGYVAHGKGSMAVELFNRM 580

Query: 541 VEAGEKPDEYILGTILNSCAAIG 563
           VE+G  PDE    ++L +C+  G
Sbjct: 581 VESGVNPDEVTFISLLCACSRSG 603

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  213 bits (543), Expect = 4e-59
 Identities = 102/383 (26%), Positives = 206/383 (53%), Gaps = 1/383 (0%)

Query: 377 GFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTF 436
           GF  ++ + + ++ M  +CG +  A  +FD +  +N+ +W  ++ G        +    F
Sbjct: 153 GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALF 212

Query: 437 CNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNF 496
             +WE G +    TF  ++       + +   Q+H  ++KTG     ++  +LI  Y   
Sbjct: 213 REMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC 272

Query: 497 GQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTIL 556
           G ++++    +G       +W +M++     G++ EA+ +++ + ++G   D++    ++
Sbjct: 273 GDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332

Query: 557 NSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDV 616
              + +   +  K  H  +I+ GF  ++   +A++D Y+K G ++ AR  FD+    N +
Sbjct: 333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKN-L 391

Query: 617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKS 676
           I +N LI  Y +HG  ++A+E+F++M    + P+  TF++V+SAC + GL ++G  +F+S
Sbjct: 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQS 451

Query: 677 MDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKE 736
           M   + ++P    Y C++++L R G L++A  +I   PF+P+  ++ +LL+ CRIH N E
Sbjct: 452 MSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLE 511

Query: 737 LGEWASEKLLLLLPKNDAAHVLL 759
           LG  A+EKL  + P+    +V+L
Sbjct: 512 LGRLAAEKLYGMGPEKLNNYVVL 534

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  193 bits (493), Expect = 3e-52
 Identities = 99/302 (32%), Positives = 155/302 (51%), Gaps = 2/302 (0%)

Query: 57  LKSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLI 116
           LKS      V+ H+   GF  D ++ N ++ M+ KCG      R+FDEM ERNL SW  I
Sbjct: 136 LKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTI 195

Query: 117 VSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRI 176
           +   +  G +     ++ +M  +G          +++    +G++  G  +HC  LK  +
Sbjct: 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGV 255

Query: 177 EKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSS 236
             + FV C++++ Y+K GD+  A  VF  +       WN+M+ GYA  GY  EAL +   
Sbjct: 256 VGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYE 315

Query: 237 MLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSG 296
           M   G+++D++TF   ++  S +A  +  +Q H  +IR+     I    AL+D+Y K   
Sbjct: 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR 375

Query: 297 MDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTA-SLFHKFILSGSRPNHVTFSILLR 355
           M+ A  VF+RM  K++ISWN L  G+  N   G  A  +F + I  G  PNHVTF  +L 
Sbjct: 376 MEDARNVFDRMPRKNLISWNALIAGYG-NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434

Query: 356 QC 357
            C
Sbjct: 435 AC 436

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  145 bits (368), Expect = 3e-36
 Identities = 114/505 (22%), Positives = 222/505 (43%), Gaps = 49/505 (9%)

Query: 216 AMIGGYAHCGYGFEALNVVSSMLFEGI------TMDKYTFINALQGCSLVADFDIGRQIH 269
           + I     CG   EAL      LFE +      T+   T+   ++ C  +      + ++
Sbjct: 92  SQIEKLVACGRHREALE-----LFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVY 146

Query: 270 GLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPG 329
             +  S  E    ++N ++ M++K   +  A ++F+ M ++++ SW T+ GG  +  N  
Sbjct: 147 WHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYR 206

Query: 330 QTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLI 389
           +  +LF +    GS     TF ++LR    L     G QL C  L  G + +  V+ +LI
Sbjct: 207 EAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALI 266

Query: 390 YMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGC 449
            M+ +CG +E A  VFD +  K    WN +L+GY  +    + L  +  + +SGV ++  
Sbjct: 267 DMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF 326

Query: 450 TFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGA 509
           TF  ++    R    +   Q H  +I+TGF       ++L+  Y  +G+++++    +  
Sbjct: 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386

Query: 510 ERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTK 569
            R ++ SW A+++   + G   +AV +F  ++  G  P+      +L++C   G  ++  
Sbjct: 387 PRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGW 446

Query: 570 SIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHH 629
            I   +      +E +              IK   M             Y  +I      
Sbjct: 447 EIFQSM------SENH-------------RIKPRAMH------------YACMIELLGRE 475

Query: 630 GLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSP-D 688
           GL+ EA   +  ++ A  +P+   + ++++AC     ++ G L   + +  YGM P   +
Sbjct: 476 GLLDEA---YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRL---AAEKLYGMGPEKLN 529

Query: 689 CYGCLVDMLSRNGYLEDAKHVIEIM 713
            Y  L+++ + +G   +A  V+E +
Sbjct: 530 NYVVLLNLYNSSGRQAEAAKVVETL 554

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  124 bits (312), Expect = 3e-29
 Identities = 73/284 (25%), Positives = 142/284 (50%), Gaps = 3/284 (1%)

Query: 450 TFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGA 509
           T+  +VE C   ++ + V  ++  +  +GF    Y+ + ++  +V  G L ++    +  
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184

Query: 510 ERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTK 569
              ++ASWG ++  LV  G+  EA  +F  + E G   +      +L + A +G+ +  +
Sbjct: 185 PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244

Query: 570 SIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHH 629
            +H  V+K G   + +V+ A+ID Y+KCGDI+ AR  FD        + +N+++  YA H
Sbjct: 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDG-MPEKTTVAWNSMLAGYALH 303

Query: 630 GLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDC 689
           G   EA+ ++ +M+ + +   Q TF  ++   S   L++        +  + G       
Sbjct: 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGL-IRTGFPLDIVA 362

Query: 690 YGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHG 733
              LVD+ S+ G +EDA++V + MP + +   + +L++G   HG
Sbjct: 363 NTALVDLYSKWGRMEDARNVFDRMPRK-NLISWNALIAGYGNHG 405

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  113 bits (285), Expect = 6e-26
 Identities = 63/254 (24%), Positives = 110/254 (43%), Gaps = 14/254 (5%)

Query: 47  LAKSLSLSENLKSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMA 106
               L  S  L S   G Q+H  ++K G   D F+   LI MYSKCG       VFD M 
Sbjct: 227 FVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP 286

Query: 107 ERNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYS 166
           E+  V+W  +++    +G  +  L +Y +M+ +G   ++F    ++++   +   E    
Sbjct: 287 EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346

Query: 167 IHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGY 226
            H   ++     +     ++++ Y+K G +  A  VF  +   ++  WNA+I GY + G 
Sbjct: 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGR 406

Query: 227 GFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNA 286
           G +A+ +   M+ EG+  +  TF+  L  C      + G +I   +              
Sbjct: 407 GTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE------------ 454

Query: 287 LIDMYIKSSGMDYA 300
             +  IK   M YA
Sbjct: 455 --NHRIKPRAMHYA 466

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 69.5 bits (170), Expect = 4e-12
 Identities = 71/303 (23%), Positives = 131/303 (43%), Gaps = 54/303 (17%)

Query: 63  GTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQ 122
           G ++H H+++ G   D FL N L+ +Y +CG   +    F+   E+++VSW ++++  + 
Sbjct: 508 GKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVA 566

Query: 123 NGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVC-----VSMGASEF-----GYSI----- 167
           +G+  M ++++  M  +G  P+E    S++  C     V+ G   F      YSI     
Sbjct: 567 HGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK 626

Query: 168 ------------------HCFALKIRIEKNPFVGCSVLN-----FYAKLGDVAAAERVFY 204
                             + F  K+ I  +P V  ++LN      + +LG++AA  +  +
Sbjct: 627 HYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAA--QHIF 684

Query: 205 SISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDI 264
            +  + VG +  +   YA  G   E   V  +M   G+T+D         GCS V   ++
Sbjct: 685 ELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDP--------GCSWV---EV 733

Query: 265 GRQIHGLIIRSEVECSISIVNALID-MYIKSSGMDYAFKVFERMADKDVISWNTLFGGFS 323
             ++H  +   E    I  +N +++  Y K      A      M + +V S + +F G S
Sbjct: 734 KGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEV-SKDDIFCGHS 792

Query: 324 ENK 326
           E  
Sbjct: 793 ERL 795

Length = 857

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 66.8 bits (163), Expect = 3e-11
 Identities = 58/234 (24%), Positives = 97/234 (41%), Gaps = 42/234 (17%)

Query: 536 IFHSLVEAGEKPDEYILGTILNSCA-------AIGAY--QRTKSIHP-FVIKLGFNTEVY 585
           +FH +V AG + + +  G +++ CA       A GAY   R+K++ P  V+   FN    
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV---FN---- 546

Query: 586 VASAVIDAYAKCGDIKGARMAFDQSFNSN--------DVIVYNTLIMAYAHHGLVSEAME 637
              A+I A   CG       AFD              D I    L+ A A+ G V  A E
Sbjct: 547 ---ALISA---CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600

Query: 638 IFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDML 697
           ++  +   N++ +   +   +++CS KG  D    ++  M  + G++P    +  LVD+ 
Sbjct: 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM-KKKGVKPDEVFFSALVDVA 659

Query: 698 SRNGYLEDAKHVIEIMP---FQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLL 748
              G L+ A  +++       +     Y SL+  C          W  +K L L
Sbjct: 660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC-----SNAKNW--KKALEL 706

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 66.1 bits (161), Expect = 6e-11
 Identities = 49/205 (23%), Positives = 96/205 (46%), Gaps = 6/205 (2%)

Query: 514 MASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHP 573
           ++++  +MS          A+ +   + EAG K D  +  T++++CA  G       +  
Sbjct: 437 LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFH 496

Query: 574 FVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSN---DVIVYNTLIMAYAHHG 630
            ++  G    V+   A+ID  A+ G +  A  A+    + N   D +V+N LI A    G
Sbjct: 497 EMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSG 556

Query: 631 LVSEAMEIFDKMKLAN--LQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPD 688
            V  A ++  +MK     + P   T  ++M AC++ G VD+   +++ +  +Y ++ +P+
Sbjct: 557 AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH-EYNIKGTPE 615

Query: 689 CYGCLVDMLSRNGYLEDAKHVIEIM 713
            Y   V+  S+ G  + A  + + M
Sbjct: 616 VYTIAVNSCSQKGDWDFALSIYDDM 640

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 55.5 bits (135), Expect = 4e-10
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSH 663
           DV+ YNTLI  Y   G V EA+++F++MK   ++P+  T+  ++     
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 59.5 bits (144), Expect = 5e-09
 Identities = 36/131 (27%), Positives = 57/131 (43%)

Query: 37  DSFLRKDPIFLAKSLSLSENLKSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFG 96
           DS +  D    +  + +   L       Q H  +++ GF  DI     L+ +YSK G   
Sbjct: 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME 377

Query: 97  WGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCV 156
               VFD M  +NL+SW  +++    +G     ++M+  M   G  PN     +V+  C 
Sbjct: 378 DARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437

Query: 157 SMGASEFGYSI 167
             G SE G+ I
Sbjct: 438 YSGLSEQGWEI 448

Length = 697

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 58.3 bits (141), Expect = 1e-08
 Identities = 65/292 (22%), Positives = 116/292 (39%), Gaps = 54/292 (18%)

Query: 114 TLIVSAAIQNGEFDMGLKMYVDMK--TNGFMPNEFAVGSVMKVCVSMG----ASEFGYSI 167
            LI SA  Q+G  D    +  +MK  T+   P+   VG++MK C + G    A E    I
Sbjct: 547 ALI-SACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605

Query: 168 HCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVG----CWNAMIGGYAH 223
           H    +  I+  P V    +N  ++ GD   A  ++  +    V      ++A++    H
Sbjct: 606 H----EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH 661

Query: 224 CGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISI 283
            G   +A  ++     +GI +   ++ + +  CS   ++    +++  I   ++  ++S 
Sbjct: 662 AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST 721

Query: 284 VNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGS 343
           +NALI    + + +  A +V   M                                  G 
Sbjct: 722 MNALITALCEGNQLPKALEVLSEMKR-------------------------------LGL 750

Query: 344 RPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRC 395
            PN +T+SILL    +  D D+GL L   A       E+ +  +L+   CRC
Sbjct: 751 CPNTITYSILLVASERKDDADVGLDLLSQAK------EDGIKPNLV--MCRC 794

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 52.6 bits (126), Expect = 9e-07
 Identities = 87/395 (22%), Positives = 153/395 (38%), Gaps = 51/395 (12%)

Query: 335 FHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCR 394
           F K I +   P   TF++L+  C    D+D  L++  L    G   +  + ++LI    +
Sbjct: 428 FAKLIRN---PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAK 484

Query: 395 CGAVEMAHSVFDNVSYK----NITTWNELLSGYCFNCCDA-DVLKTF--CNIWES-GVEV 446
            G V+    VF  +       N+ T+  L+ G    C  A  V K F    I  S  V+ 
Sbjct: 485 SGKVDAMFEVFHEMVNAGVEANVHTFGALIDG----CARAGQVAKAFGAYGIMRSKNVKP 540

Query: 447 NGCTFFYVVETCCRSENQQ--------MVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQ 498
           +   F  ++  C +S            M  + H   I     + G    +L+K+  N GQ
Sbjct: 541 DRVVFNALISACGQSGAVDRAFDVLAEMKAETHP--IDPDHITVG----ALMKACANAGQ 594

Query: 499 LDNSFEFSNGAERLDMASWGAMMSALVH----QGHNHEAVTIFHSLVEAGEKPDEYILGT 554
           +D + E        ++     + +  V+    +G    A++I+  + + G KPDE     
Sbjct: 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654

Query: 555 ILNSC-------AAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAF 607
           +++          A    Q  +      IKLG  T  Y  S+++ A +   + K A   +
Sbjct: 655 LVDVAGHAGDLDKAFEILQDARKQG---IKLG--TVSY--SSLMGACSNAKNWKKALELY 707

Query: 608 DQSFNSN---DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHK 664
           +   +      V   N LI A      + +A+E+  +MK   L P+  T+  ++ A   K
Sbjct: 708 EDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767

Query: 665 GLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSR 699
              D G  L        G++P+     C+  +  R
Sbjct: 768 DDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLR 801

Length = 1060

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 42.4 bits (101), Expect = 1e-05
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 617 IVYNTLIMAYAHHGLVSEAMEIFDKMK 643
           + YN+LI  Y   G + EA+E+F +MK
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMK 27

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 42.3 bits (101), Expect = 1e-05
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMK 643
           DV+ YNTLI      G V EA+E+ D+M+
Sbjct: 6   DVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 42.4 bits (101), Expect = 2e-05
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 310 KDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGK 359
            DV+++NTL  G+ +     +   LF++    G +PN  T+SIL+    K
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 39.7 bits (94), Expect = 1e-04
 Identities = 9/47 (19%), Positives = 24/47 (51%)

Query: 109 NLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVC 155
           ++V++  ++    + G+ +  LK++ +MK  G  PN +    ++   
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPS 650
           + YNTLI      G V EA+E+F +MK   ++P 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 38.9 bits (92), Expect = 3e-04
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 210 DVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTF---INAL 253
           DV  +N +I GY   G   EAL + + M   GI  + YT+   I+ L
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 41.0 bits (94), Expect = 0.002
 Identities = 31/202 (15%), Positives = 68/202 (33%), Gaps = 8/202 (3%)

Query: 516 SWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDE-YILGTILNSCAAIGAYQRTKSIHPF 574
               +  AL+  G   EA+ +    +E    P+    L  +     A+G Y+    +   
Sbjct: 61  LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEK 120

Query: 575 VIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSN-----DVIVYNTLIMAYAHH 629
            + L  + ++  A   + A  + GD + A   ++++   +            L       
Sbjct: 121 ALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEAL 180

Query: 630 GLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDC 689
           G   EA+E+ +K    N        +++       G  ++    ++          + + 
Sbjct: 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEA 238

Query: 690 YGCLVDMLSRNGYLEDAKHVIE 711
              L  +L   G  E+A   +E
Sbjct: 239 LYNLALLLLELGRYEEALEALE 260

Length = 291

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 40.6 bits (95), Expect = 0.003
 Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 9/139 (6%)

Query: 599 DIKGAR--MAFDQSFN-SNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFV 655
           DI GA   +   Q      D  +Y TLI   A  G V    E+F +M  A ++ +  TF 
Sbjct: 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFG 511

Query: 656 SVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-- 713
           +++  C+  G V K    +  M S+  ++P    +  L+    ++G ++ A  V+  M  
Sbjct: 512 ALIDGCARAGQVAKAFGAYGIMRSK-NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKA 570

Query: 714 ---PFQPSPTVYRSLLSGC 729
              P  P      +L+  C
Sbjct: 571 ETHPIDPDHITVGALMKAC 589

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 35.8 bits (84), Expect = 0.003
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 4/42 (9%)

Query: 285 NALIDMYIKSSGMDYAFKVFERMADK----DVISWNTLFGGF 322
           N LID Y K   ++ A K+F  M  +    +V +++ L  G 
Sbjct: 7   NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 616 VIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP 649
           +  YN L++A A  G    A+ + ++MK + L+P
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	796
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.96
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.95
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.94
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.94
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.86
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.84
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.82
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.82
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.82
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.82
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.81
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.81
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.81
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.8
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.8
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.79
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.77
PRK14574	822	hmsH outer membrane protein; Provisional	99.76
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.75
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.75
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.74
PRK14574	822	hmsH outer membrane protein; Provisional	99.71
KOG2076	895	consensus RNA polymerase III transcription factor	99.7
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.68
KOG2076	895	consensus RNA polymerase III transcription factor	99.64
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.64
KOG2003	840	consensus TPR repeat-containing protein [General f	99.53
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.53
KOG2003	840	consensus TPR repeat-containing protein [General f	99.48
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.46
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.44
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.44
KOG1126	638	consensus DNA-binding cell division cycle control	99.43
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.39
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.39
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.39
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.38
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.38
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.35
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.35
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.34
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.34
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.33
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.33
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.31
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.29
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.29
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.29
PF13041	50	PPR_2: PPR repeat family	99.27
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.24
KOG1126	638	consensus DNA-binding cell division cycle control	99.24
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.22
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.21
PF13041	50	PPR_2: PPR repeat family	99.21
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.2
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.19
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.18
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.17
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.16
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.14
KOG1129	478	consensus TPR repeat-containing protein [General f	99.07
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.06
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.03
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.03
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.02
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.01
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.98
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.95
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.95
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.94
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.93
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.93
PRK12370	553	invasion protein regulator; Provisional	98.93
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.9
PRK11189	296	lipoprotein NlpI; Provisional	98.89
PRK12370	553	invasion protein regulator; Provisional	98.89
KOG1129	478	consensus TPR repeat-containing protein [General f	98.87
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.86
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.86
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.85
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.79
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.74
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.73
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.7
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.69
PRK11189	296	lipoprotein NlpI; Provisional	98.6
PRK15359	144	type III secretion system chaperone protein SscB;	98.59
PF12854	34	PPR_1: PPR repeat	98.59
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.57
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.55
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.53
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.5
PRK04841	903	transcriptional regulator MalT; Provisional	98.47
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.43
PF12854	34	PPR_1: PPR repeat	98.41
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.41
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.41
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.41
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.33
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.31
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.28
PRK04841	903	transcriptional regulator MalT; Provisional	98.27
KOG1125	579	consensus TPR repeat-containing protein [General f	98.27
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.24
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.24
PLN02789	320	farnesyltranstransferase	98.23
KOG1125	579	consensus TPR repeat-containing protein [General f	98.22
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.21
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.19
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.18
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.17
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.15
PRK15359	144	type III secretion system chaperone protein SscB;	98.12
PLN02789	320	farnesyltranstransferase	98.11
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.11
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.11
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.08
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.03
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.01
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.0
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.0
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.99
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.97
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.95
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.95
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.94
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.93
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.92
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.91
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.91
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.9
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.88
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.84
KOG0553	304	consensus TPR repeat-containing protein [General f	97.83
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.75
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.75
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.75
KOG0553	304	consensus TPR repeat-containing protein [General f	97.73
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.71
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.64
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.63
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.61
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.59
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.58
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.57
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.57
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.56
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.55
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.49
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.46
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.42
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.4
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.39
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.37
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.37
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.34
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.31
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.31
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.3
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.28
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.28
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.24
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.23
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.19
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.19
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.17
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.15
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.13
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.12
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.11
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.11
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.08
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.08
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.05
PRK10803	263	tol-pal system protein YbgF; Provisional	96.99
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.9
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.9
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.88
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	96.87
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.86
PF13371	73	TPR_9: Tetratricopeptide repeat	96.85
PF13428	44	TPR_14: Tetratricopeptide repeat	96.84
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.84
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.84
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.78
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.78
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.76
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.65
PF12688	120	TPR_5: Tetratrico peptide repeat	96.64
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.57
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	96.55
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.48
PRK10803	263	tol-pal system protein YbgF; Provisional	96.47
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.44
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.42
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.41
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.41
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.39
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.26
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	96.19
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.03
KOG2796	366	consensus Uncharacterized conserved protein [Funct	95.96
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.91
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	95.89
COG3898	531	Uncharacterized membrane-bound protein [Function u	95.77
PF13371	73	TPR_9: Tetratricopeptide repeat	95.76
PF12688	120	TPR_5: Tetratrico peptide repeat	95.74
KOG2796	366	consensus Uncharacterized conserved protein [Funct	95.65
PF13512	142	TPR_18: Tetratricopeptide repeat	95.63
COG3898	531	Uncharacterized membrane-bound protein [Function u	95.56
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	95.54
PRK15331	165	chaperone protein SicA; Provisional	95.44
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	95.43
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.33
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.31
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.16
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	95.15
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.14
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	95.1
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	94.87
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	94.82
PRK11906	458	transcriptional regulator; Provisional	94.73
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	94.69
PRK15331	165	chaperone protein SicA; Provisional	94.58
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	94.54
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	94.5
KOG3941	406	consensus Intermediate in Toll signal transduction	94.45
PRK09687	280	putative lyase; Provisional	94.44
PF13512	142	TPR_18: Tetratricopeptide repeat	94.25
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	94.17
PF03704	146	BTAD: Bacterial transcriptional activator domain;	94.1
KOG3941	406	consensus Intermediate in Toll signal transduction	94.08
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	94.02
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.01
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	93.79
smart00299	140	CLH Clathrin heavy chain repeat homology.	93.59
KOG4555	175	consensus TPR repeat-containing protein [Function	93.38
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	93.06
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.04
KOG4555	175	consensus TPR repeat-containing protein [Function	93.04
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	92.98
PRK11906	458	transcriptional regulator; Provisional	92.96
smart00299	140	CLH Clathrin heavy chain repeat homology.	92.87
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	92.86
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	92.57
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	92.51
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	92.38
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	92.33
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	92.27
KOG1941	518	consensus Acetylcholine receptor-associated protei	92.06
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	91.84
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	91.73
KOG1941	518	consensus Acetylcholine receptor-associated protei	91.7
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	91.64
COG3629	280	DnrI DNA-binding transcriptional activator of the	91.45
KOG1586	288	consensus Protein required for fusion of vesicles	91.39
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	91.16
COG3118	304	Thioredoxin domain-containing protein [Posttransla	91.14
KOG1258	577	consensus mRNA processing protein [RNA processing	91.11
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	90.85
PF13428	44	TPR_14: Tetratricopeptide repeat	90.65
KOG2610	491	consensus Uncharacterized conserved protein [Funct	90.64
COG4105	254	ComL DNA uptake lipoprotein [General function pred	90.61
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	90.6
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	90.54
COG0457	291	NrfG FOG: TPR repeat [General function prediction	90.51
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	90.47
KOG4648	536	consensus Uncharacterized conserved protein, conta	90.23
PRK09687	280	putative lyase; Provisional	90.03
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	90.01
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	89.89
KOG2610	491	consensus Uncharacterized conserved protein [Funct	89.83
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	89.75
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	89.55
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	89.09
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	87.8
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	87.62
KOG4234	271	consensus TPR repeat-containing protein [General f	87.58
KOG1585	308	consensus Protein required for fusion of vesicles	87.4
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	87.19
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	86.96
COG3118	304	Thioredoxin domain-containing protein [Posttransla	86.93
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	86.73
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	86.28
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	86.2
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	86.18
PF13431	34	TPR_17: Tetratricopeptide repeat	85.98
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	85.78
COG4105	254	ComL DNA uptake lipoprotein [General function pred	85.44
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	85.16
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	85.1
PRK11619	644	lytic murein transglycosylase; Provisional	85.02
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	84.31
KOG4570	418	consensus Uncharacterized conserved protein [Funct	84.29
PF13431	34	TPR_17: Tetratricopeptide repeat	83.72
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	83.63
COG1747	711	Uncharacterized N-terminal domain of the transcrip	83.33
COG4455	273	ImpE Protein of avirulence locus involved in tempe	82.74
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	82.57
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	82.53
COG3629	280	DnrI DNA-binding transcriptional activator of the	82.47
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	82.29
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	82.26
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	81.48
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	81.11
KOG4570	418	consensus Uncharacterized conserved protein [Funct	80.78
COG4455	273	ImpE Protein of avirulence locus involved in tempe	80.16

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=5.1e-100  Score=879.77  Aligned_cols=683  Identities=29%  Similarity=0.495  Sum_probs=670.7

Q ss_pred             CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhcCCCChhHhhHH
Q 036290          107 ERNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSV  186 (796)
Q Consensus       107 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l  186 (796)
                      .++..++|.++++|++.|++++|..+|++|.+.|+.|+..+|..++++|.+.+.++.|.+++..+.+.|..++..+++++
T Consensus        48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l  127 (857)
T PLN03077         48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM  127 (857)
T ss_pred             ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence            56777899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCChhHHHHHhhccCCCCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHHH
Q 036290          187 LNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGR  266 (796)
Q Consensus       187 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~  266 (796)
                      +.+|+++|+++.|.++|++|++||+.+||++|.+|++.|++++|+++|++|...|+.||..||+.+|++|+..+++..+.
T Consensus       128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~  207 (857)
T PLN03077        128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR  207 (857)
T ss_pred             HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCC
Q 036290          267 QIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPN  346 (796)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~  346 (796)
                      +++..+.+.|+.||..++|+||++|+++|+++.|.++|++|..+|+.+||++|.+|++.|++++|+++|++|...|+.||
T Consensus       208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd  287 (857)
T PLN03077        208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD  287 (857)
T ss_pred             HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCChhhHHHHHHHHHhc
Q 036290          347 HVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFN  426 (796)
Q Consensus       347 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~  426 (796)
                      ..||+.+|.+|++.|+.+.+.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|..||.++||++|.+|++.
T Consensus       288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~  367 (857)
T PLN03077        288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN  367 (857)
T ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHH
Q 036290          427 CCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFS  506 (796)
Q Consensus       427 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  506 (796)
                      |++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..++++|+++|++.|++++|.++|
T Consensus       368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf  447 (857)
T PLN03077        368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF  447 (857)
T ss_pred             CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhH
Q 036290          507 NGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYV  586 (796)
Q Consensus       507 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  586 (796)
                      ++|.++|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.+|.+|++.|+.+.+.+++..+.+.|+.++..+
T Consensus       448 ~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~  526 (857)
T PLN03077        448 HNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFL  526 (857)
T ss_pred             HhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcccee
Confidence            999999999999999999999999999999999986 5999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 036290          587 ASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGL  666 (796)
Q Consensus       587 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~  666 (796)
                      +++|+++|+++|++++|.++|+++  .+|..+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|+
T Consensus       527 ~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~  604 (857)
T PLN03077        527 PNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGM  604 (857)
T ss_pred             chHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCh
Confidence            999999999999999999999554  889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 036290          667 VDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKLL  746 (796)
Q Consensus       667 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  746 (796)
                      +++|.++|+.|.+++|+.|+..+|+.++++|.+.|++++|.+++++|+.+||..+|++|+.+|..+|+.+.|+.+.++++
T Consensus       605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~  684 (857)
T PLN03077        605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIF  684 (857)
T ss_pred             HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            99999999999977899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCcceEEecC--------------hhhHHhCCCccCCCccEEEeCCeeeeeeeee
Q 036290          747 LLLPKNDAAHVLLSK--------------RKRQREGNLLDHEGVCNVNDGIKTVDLKLEL  792 (796)
Q Consensus       747 ~~~p~~~~~~~~l~~--------------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  792 (796)
                      +++|+++..|++|+|              |+.|++.|++|.||+|||++++++..|..+.
T Consensus       685 ~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d  744 (857)
T PLN03077        685 ELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDD  744 (857)
T ss_pred             hhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCC
Confidence            999999999999998              9999999999999999999999988886654

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=9.9e-92  Score=810.80  Aligned_cols=647  Identities=25%  Similarity=0.432  Sum_probs=630.2

Q ss_pred             CCCCCChhhHHHHHhhhhccCChhhHHHHHHHHHHhCCCCCchhhHHHHHHHHccCChhHHHHHhcccCCCCcchHHHHH
Q 036290           38 SFLRKDPIFLAKSLSLSENLKSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIV  117 (796)
Q Consensus        38 ~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll  117 (796)
                      .+.+|+..+|..++++|...+.+..|.++|+.+.+.|..+++.++|+|+.+|+++|+++.|.++|++|++||+++||.||
T Consensus        80 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li  159 (857)
T PLN03077         80 LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLV  159 (857)
T ss_pred             cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhcCCCChhHhhHHHHHHHccCChh
Q 036290          118 SAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVA  197 (796)
Q Consensus       118 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~  197 (796)
                      ++|++.|++++|+.+|++|...|+.||..||+.++++|+..+++..+.+++..|.+.|+.||..++++||.+|+++|+++
T Consensus       160 ~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~  239 (857)
T PLN03077        160 GGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVV  239 (857)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccCCCCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHHHHHHHHHHHhcC
Q 036290          198 AAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEV  277 (796)
Q Consensus       198 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  277 (796)
                      +|.++|++|+++|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+.+.+.+++..+.+.|+
T Consensus       240 ~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~  319 (857)
T PLN03077        240 SARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGF  319 (857)
T ss_pred             HHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHhhhcCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHh
Q 036290          278 ECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQC  357 (796)
Q Consensus       278 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~  357 (796)
                      .||..+||+||.+|+++|++++|.++|++|..||+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|
T Consensus       320 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~  399 (857)
T PLN03077        320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC  399 (857)
T ss_pred             ccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHH
Q 036290          358 GKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFC  437 (796)
Q Consensus       358 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  437 (796)
                      ++.|+++.|.++++.+.+.|+.|+..+|++|+++|+++|++++|.++|++|.++|+++||++|.+|++.|+.++|+.+|+
T Consensus       400 ~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~  479 (857)
T PLN03077        400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFR  479 (857)
T ss_pred             hccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhH
Q 036290          438 NIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASW  517 (796)
Q Consensus       438 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  517 (796)
                      +|.. +++||..||+.+|.+|++.|+++.+.+++..+.+.|+.++..++++|+++|+++|++++|.++|+.+ .+|..+|
T Consensus       480 ~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~  557 (857)
T PLN03077        480 QMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSW  557 (857)
T ss_pred             HHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhH
Confidence            9986 5999999999999999999999999999999999999999999999999999999999999999999 8999999


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHH-HhCCCCchhHHHHHHHHHHh
Q 036290          518 GAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVI-KLGFNTEVYVASAVIDAYAK  596 (796)
Q Consensus       518 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~  596 (796)
                      |++|.+|++.|+.++|+++|++|.+.|+.||..||+.+|.+|++.|.+++|.++|+.|. +.|+.|+..+|+.++++|++
T Consensus       558 n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r  637 (857)
T PLN03077        558 NILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR  637 (857)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999 68999999999999999999


Q ss_pred             cCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHH
Q 036290          597 CGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFK  675 (796)
Q Consensus       597 ~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~  675 (796)
                      .|++++|.++++++--.||..+|++|+.+|..+|+.+.+....+++.+  +.| +...|..+.+.|+..|+|++|.++.+
T Consensus       638 ~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~  715 (857)
T PLN03077        638 AGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRK  715 (857)
T ss_pred             CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHH
Confidence            999999999996665679999999999999999999999999999988  678 55667777899999999999999999


Q ss_pred             HhHhhcCCCCCchH
Q 036290          676 SMDSQYGMQPSPDC  689 (796)
Q Consensus       676 ~~~~~~~~~p~~~~  689 (796)
                      .|.+. |+++++.+
T Consensus       716 ~M~~~-g~~k~~g~  728 (857)
T PLN03077        716 TMREN-GLTVDPGC  728 (857)
T ss_pred             HHHHc-CCCCCCCc
Confidence            99977 99888643

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.8e-69  Score=610.34  Aligned_cols=481  Identities=23%  Similarity=0.447  Sum_probs=469.9

Q ss_pred             CCcchHHHHHHHHHhCCCccHHHHHHHHHHHcC-CCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 036290          310 KDVISWNTLFGGFSENKNPGQTASLFHKFILSG-SRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSL  388 (796)
Q Consensus       310 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l  388 (796)
                      ++..+|+.+|.++.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.+++..|.+.|+.||..+|+.|
T Consensus        85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L  164 (697)
T PLN03081         85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV  164 (697)
T ss_pred             CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence            477799999999999999999999999998865 7899999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHH
Q 036290          389 IYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVG  468 (796)
Q Consensus       389 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~  468 (796)
                      +.+|++.|++++|.++|++|.+||.++||+++.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|+..+..+.+.
T Consensus       165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~  244 (697)
T PLN03081        165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ  244 (697)
T ss_pred             HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 036290          469 QIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPD  548 (796)
Q Consensus       469 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~  548 (796)
                      +++..+.+.|+.+|..++++|+++|+++|++++|.++|+.|.++|+.+||.+|.+|++.|++++|+++|++|.+.|+.||
T Consensus       245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd  324 (697)
T PLN03081        245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID  324 (697)
T ss_pred             HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHh
Q 036290          549 EYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAH  628 (796)
Q Consensus       549 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~  628 (796)
                      ..||+.++.+|++.|+++.|.+++..|.+.|+.|+..++++|+++|+++|++++|.++| +.+..+|..+||+||.+|++
T Consensus       325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf-~~m~~~d~~t~n~lI~~y~~  403 (697)
T PLN03081        325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVF-DRMPRKNLISWNALIAGYGN  403 (697)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHH-HhCCCCCeeeHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999 66677999999999999999


Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHH
Q 036290          629 HGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKH  708 (796)
Q Consensus       629 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~  708 (796)
                      .|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+
T Consensus       404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~  483 (697)
T PLN03081        404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA  483 (697)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999888999999999999999999999999999


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC--------------hhhHHhCCCccCC
Q 036290          709 VIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK--------------RKRQREGNLLDHE  774 (796)
Q Consensus       709 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~--------------~~~~~~~~~~~~~  774 (796)
                      ++++|+..|+..+|++|+.+|..+|+.+.|+.+++++++.+|++...|+.|++              ++.|++.|++|.|
T Consensus       484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~  563 (697)
T PLN03081        484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP  563 (697)
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence            99999999999999999999999999999999999999999999999999998              8899999999999


Q ss_pred             CccEEEeCCeeeeeeee
Q 036290          775 GVCNVNDGIKTVDLKLE  791 (796)
Q Consensus       775 ~~s~~~~~~~~~~~~~~  791 (796)
                      |+|||++++++..|-.+
T Consensus       564 g~s~i~~~~~~~~f~~~  580 (697)
T PLN03081        564 ACTWIEVKKQDHSFFSG  580 (697)
T ss_pred             CeeEEEECCeEEEEccC
Confidence            99999999998877554

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=2.8e-68  Score=600.20  Aligned_cols=531  Identities=14%  Similarity=0.182  Sum_probs=415.0

Q ss_pred             CCCchhhHHHHHHHHccCChhHHHHHhcccCCCCcc-----hHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHH
Q 036290           76 TNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLV-----SWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGS  150 (796)
Q Consensus        76 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~  150 (796)
                      .++...|..++..|+++|++++|+++|++|++++..     +++.++.+|.+.|..++|..+|+.|..    ||..||+.
T Consensus       367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~  442 (1060)
T PLN03218        367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM  442 (1060)
T ss_pred             CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence            344556666666666666666666666666554433     334455556666666666666666642    66666666


Q ss_pred             HHHHHhccCChhHHHHHHHHHHHhcCCCChhHhhHHHHHHHccCChhHHHHHhhccC----CCCceeHHHHHHHHHhCCC
Q 036290          151 VMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSIS----SDDVGCWNAMIGGYAHCGY  226 (796)
Q Consensus       151 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~  226 (796)
                      +|.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|+++|+++.|.++|++|.    .||..+|++||.+|++.|+
T Consensus       443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~  522 (1060)
T PLN03218        443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ  522 (1060)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence            666666666666666666666666666666666666666666666666666666665    3667777777777778888


Q ss_pred             chHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHHHHHHHHHHH--hcCCCChHHHHHHHHhhhcCCCHHHHHHHH
Q 036290          227 GFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIR--SEVECSISIVNALIDMYIKSSGMDYAFKVF  304 (796)
Q Consensus       227 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  304 (796)
                      +++|+++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+  .|+.||..+|++||.+|++.|++++|.++|
T Consensus       523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf  602 (1060)
T PLN03218        523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY  602 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            888888888888888888888888888888888888888888888876  568888888888888888899998899988


Q ss_pred             hhcCC----CCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCC
Q 036290          305 ERMAD----KDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLD  380 (796)
Q Consensus       305 ~~~~~----~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~  380 (796)
                      +.|.+    |+..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+.|+.|
T Consensus       603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p  682 (1060)
T PLN03218        603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL  682 (1060)
T ss_pred             HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence            88875    46689999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHHhCC----CCChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHH
Q 036290          381 EENVTSSLIYMFCRCGAVEMAHSVFDNVS----YKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVE  456 (796)
Q Consensus       381 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~  456 (796)
                      +..+|++||.+|++.|++++|.++|++|.    .||..+||.||.+|++.|++++|+++|++|...|+.||..||+.+|.
T Consensus       683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~  762 (1060)
T PLN03218        683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV  762 (1060)
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            99999999999999999999999999995    58999999999999999999999999999999999999999999999


Q ss_pred             HhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHH
Q 036290          457 TCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTI  536 (796)
Q Consensus       457 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~  536 (796)
                      +|++.|+++.|.++++.|.+.|+.||..+|++++..+.+  ++++|.++.+.+..     |+. .......+..+.|+.+
T Consensus       763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~-----f~~-g~~~~~n~w~~~Al~l  834 (1060)
T PLN03218        763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVS-----FDS-GRPQIENKWTSWALMV  834 (1060)
T ss_pred             HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhh-----hhc-cccccccchHHHHHHH
Confidence            999999999999999999999999999999999876432  34444433222211     100 0011112234568888


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCCh
Q 036290          537 FHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDV  616 (796)
Q Consensus       537 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~  616 (796)
                      |++|.+.|+.||..||+.+|.+++..+..+.+..+++.|...+..                                ++.
T Consensus       835 f~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~--------------------------------~~~  882 (1060)
T PLN03218        835 YRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADS--------------------------------QKQ  882 (1060)
T ss_pred             HHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCC--------------------------------cch
Confidence            888888888888888888886666666666655555555444433                                345


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 036290          617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQA  652 (796)
Q Consensus       617 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  652 (796)
                      .+|+++|+++.+.  .++|..++++|...|+.|+..
T Consensus       883 ~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~  916 (1060)
T PLN03218        883 SNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS  916 (1060)
T ss_pred             hhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence            5666666666322  368999999999999999875

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=8.9e-67  Score=588.07  Aligned_cols=536  Identities=13%  Similarity=0.117  Sum_probs=403.7

Q ss_pred             CCCcccHHHHHHHHhccCChhHHHHHHHHHHHhcC-CCChhHhhHHHHHHHccCChhHHHHHhhccCCCCceeHHHHHHH
Q 036290          142 MPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRI-EKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGG  220 (796)
Q Consensus       142 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~  220 (796)
                      .++...|..++..|++.|+++.|.++|++|.+.|+ .++..+++.++..|.+.|.+++|.++|+.|..||..+|+.+|.+
T Consensus       367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a  446 (1060)
T PLN03218        367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV  446 (1060)
T ss_pred             CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            34555666666666666666677777776666663 45555666666666666666666666666666666666666666


Q ss_pred             HHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHH
Q 036290          221 YAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYA  300 (796)
Q Consensus       221 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  300 (796)
                      |++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+               
T Consensus       447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTyn---------------  511 (1060)
T PLN03218        447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFG---------------  511 (1060)
T ss_pred             HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHH---------------
Confidence            66666666666666666666666666666666666666666666666666666666555555555               


Q ss_pred             HHHHhhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHH--hCC
Q 036290          301 FKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALH--CGF  378 (796)
Q Consensus       301 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~  378 (796)
                                      .+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+  .|+
T Consensus       512 ----------------aLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi  575 (1060)
T PLN03218        512 ----------------ALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI  575 (1060)
T ss_pred             ----------------HHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCC
Confidence                            45555555555555666666666666666666666666666666666666666666654  456


Q ss_pred             CCchhHHHHHHHHHHhcCChHHHHHHHHhCCC----CChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHH
Q 036290          379 LDEENVTSSLIYMFCRCGAVEMAHSVFDNVSY----KNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYV  454 (796)
Q Consensus       379 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l  454 (796)
                      .||..+|+++|.+|++.|++++|.++|+.|.+    |+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+
T Consensus       576 ~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsL  655 (1060)
T PLN03218        576 DPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSAL  655 (1060)
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            66666666666666666666666666666653    45567777777777778888888888888888888888888888


Q ss_pred             HHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCC----CCCHhhHHHHHHHHHHcCCh
Q 036290          455 VETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAE----RLDMASWGAMMSALVHQGHN  530 (796)
Q Consensus       455 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~  530 (796)
                      |.+|++.|++++|.++++.|.+.|+.|+..+|++||.+|++.|++++|.++|+.|.    .||..+||.+|.+|++.|++
T Consensus       656 I~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~  735 (1060)
T PLN03218        656 VDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQL  735 (1060)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence            88888888888888888888888888888889999999999999999988888885    48999999999999999999


Q ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 036290          531 HEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQS  610 (796)
Q Consensus       531 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~  610 (796)
                      ++|.++|++|...|+.||..||+.+|.+|++.|+++.|.+++..|.+.|+.||..+|+.++.++.  +++++|.++.+..
T Consensus       736 eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v  813 (1060)
T PLN03218        736 PKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPV  813 (1060)
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999997643  2455555544111


Q ss_pred             CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHH
Q 036290          611 FNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCY  690 (796)
Q Consensus       611 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~  690 (796)
                      .      .|+. .......+..+.|..+|++|.+.|+.||..||+.++.+++..+..+.+..+++.|... +..|+..+|
T Consensus       814 ~------~f~~-g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y  885 (1060)
T PLN03218        814 V------SFDS-GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNL  885 (1060)
T ss_pred             h------hhhc-cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhh
Confidence            1      1110 0111122345679999999999999999999999998888899999999999888755 788889999


Q ss_pred             HHHHHHHHhcCChHHHHHHHHhC---CCCCCHH
Q 036290          691 GCLVDMLSRNGYLEDAKHVIEIM---PFQPSPT  720 (796)
Q Consensus       691 ~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~  720 (796)
                      ++|++++.+.  .++|..++++|   |+.|+..
T Consensus       886 ~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~  916 (1060)
T PLN03218        886 STLVDGFGEY--DPRAFSLLEEAASLGVVPSVS  916 (1060)
T ss_pred             HHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence            9999998432  46899999999   6777753

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=3.4e-67  Score=591.88  Aligned_cols=475  Identities=20%  Similarity=0.328  Sum_probs=460.6

Q ss_pred             CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCC-CCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhcCCCChhHhhH
Q 036290          107 ERNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNG-FMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCS  185 (796)
Q Consensus       107 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~  185 (796)
                      .++..+|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++.+.+.+++..|.+.|+.||..+|+.
T Consensus        84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~  163 (697)
T PLN03081         84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR  163 (697)
T ss_pred             CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence            4677899999999999999999999999999864 789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCChhHHHHHhhccCCCCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHH
Q 036290          186 VLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIG  265 (796)
Q Consensus       186 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  265 (796)
                      |+.+|+++|+++.|.++|++|++||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.+.+
T Consensus       164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~  243 (697)
T PLN03081        164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG  243 (697)
T ss_pred             HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCC
Q 036290          266 RQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRP  345 (796)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p  345 (796)
                      .+++..+.+.|+.||..++++||++|+++|++++|.++|++|.++|+.+||++|.+|++.|++++|+++|++|.+.|+.|
T Consensus       244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p  323 (697)
T PLN03081        244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI  323 (697)
T ss_pred             HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCChhhHHHHHHHHHh
Q 036290          346 NHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCF  425 (796)
Q Consensus       346 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~  425 (796)
                      |..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|++|+++|+++|++++|.++|++|.++|+.+||+||.+|++
T Consensus       324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~  403 (697)
T PLN03081        324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN  403 (697)
T ss_pred             CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHH-hCCCCCchhHhHHHHHHHhcCCcchHHH
Q 036290          426 NCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIK-TGFSSCGYICSSLIKSYVNFGQLDNSFE  504 (796)
Q Consensus       426 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~  504 (796)
                      .|+.++|+++|++|.+.|+.||..||+.+|.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+
T Consensus       404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~  483 (697)
T PLN03081        404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA  483 (697)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999986 6999999999999999999999999999


Q ss_pred             HHhcCC-CCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCC
Q 036290          505 FSNGAE-RLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPD-EYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNT  582 (796)
Q Consensus       505 ~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  582 (796)
                      ++++|. .|+..+|++++.+|...|+++.|..+++++.+  +.|+ ..+|..+++.|++.|++++|.++++.|.+.|+..
T Consensus       484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k  561 (697)
T PLN03081        484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM  561 (697)
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence            999986 48999999999999999999999999999864  4554 6799999999999999999999999999999864


Q ss_pred             c
Q 036290          583 E  583 (796)
Q Consensus       583 ~  583 (796)
                      .
T Consensus       562 ~  562 (697)
T PLN03081        562 H  562 (697)
T ss_pred             C
Confidence            3

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=1.5e-36  Score=361.60  Aligned_cols=702  Identities=13%  Similarity=0.000  Sum_probs=444.2

Q ss_pred             hhHHHHHhhhhccCChhhHHHHHHHHHHhCCCCCchhhHHHHHHHHccCChhHHHHHhcccCC---CCcchHHHHHHHHH
Q 036290           45 IFLAKSLSLSENLKSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAE---RNLVSWTLIVSAAI  121 (796)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~  121 (796)
                      ..+..+...+...+++..|...++.+.+... .+...+..+...+...|++++|.++++++..   ++...|..+...+.
T Consensus       126 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (899)
T TIGR02917       126 ELLALRGLAYLGLGQLELAQKSYEQALAIDP-RSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLL  204 (899)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            4444455555666667777777766655432 2345566666666666777777766665432   23445666666666


Q ss_pred             hcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhcCCCChhHhh-----------------
Q 036290          122 QNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGC-----------------  184 (796)
Q Consensus       122 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-----------------  184 (796)
                      ..|++++|...|++..+.. +.+..++..+...+...|+.+.|...++.+.+..... .....                 
T Consensus       205 ~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~  282 (899)
T TIGR02917       205 SLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNS-PLAHYLKALVDFQKKNYEDARE  282 (899)
T ss_pred             hcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCHHHHHH
Confidence            6666666666666665543 2334455555555666666666666666665544322 11111                 


Q ss_pred             -----------------HHHHHHHccCChhHHHHHhhccCC---CCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 036290          185 -----------------SVLNFYAKLGDVAAAERVFYSISS---DDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITM  244 (796)
Q Consensus       185 -----------------~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  244 (796)
                                       .+...+...|++++|...|+...+   .+...+..+...+.+.|++++|...++.+.+.. +.
T Consensus       283 ~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~  361 (899)
T TIGR02917       283 TLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PD  361 (899)
T ss_pred             HHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CC
Confidence                             222233344444444444444322   122334444555555566666666655554432 23


Q ss_pred             CHhhHHHHHHhhccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCCC---CcchHHHHHHH
Q 036290          245 DKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADK---DVISWNTLFGG  321 (796)
Q Consensus       245 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~  321 (796)
                      +...+..+...+...|++++|.++++.+.+.. +.+...+..+...+...|+.++|...|+...+.   +...+..++..
T Consensus       362 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~  440 (899)
T TIGR02917       362 DPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILS  440 (899)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHH
Confidence            44455555555556666666666666555443 223444555555555666666666666555431   22344455566


Q ss_pred             HHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHH
Q 036290          322 FSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMA  401 (796)
Q Consensus       322 ~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A  401 (796)
                      +.+.|++++|.++++.+... .+++..++..+...+...|++++|.+.|..+.+.. +.+...+..+...+...|++++|
T Consensus       441 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A  518 (899)
T TIGR02917       441 YLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDA  518 (899)
T ss_pred             HHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHH
Confidence            66666666666666666543 23345566666777777777777777777766543 33445566667777777777777


Q ss_pred             HHHHHhCCC---CChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhC
Q 036290          402 HSVFDNVSY---KNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTG  478 (796)
Q Consensus       402 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~  478 (796)
                      ...|+.+..   .+..++..+...+.+.|+.++|..+++++...+ +.+...+..+...+...|+++.|..+++.+.+..
T Consensus       519 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  597 (899)
T TIGR02917       519 IQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA  597 (899)
T ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            777776643   345566777777777777777777777776543 3344556667777777777777777777776544


Q ss_pred             CCCCchhHhHHHHHHHhcCCcchHHHHHhcCCC---CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 036290          479 FSSCGYICSSLIKSYVNFGQLDNSFEFSNGAER---LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTI  555 (796)
Q Consensus       479 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~l  555 (796)
                       +.+...+..+..+|...|++++|...|+.+.+   .+...+..+...+.+.|++++|...++++.+.. +.+..++..+
T Consensus       598 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l  675 (899)
T TIGR02917       598 -PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGL  675 (899)
T ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence             55667777777777777888877777776643   345567777777777788888888877776542 3446677777


Q ss_pred             HHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-CChhHHHHHHHHHHhcCChHH
Q 036290          556 LNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-NDVIVYNTLIMAYAHHGLVSE  634 (796)
Q Consensus       556 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~  634 (796)
                      ...+...|+++.|.++++.+.+.+.. +...+..+...+...|++++|.+.++..+.. |+..++..++..+.+.|++++
T Consensus       676 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  754 (899)
T TIGR02917       676 AQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAE  754 (899)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHH
Confidence            77777778888888887777766533 5566677777777888888888888665543 455666677777888888888


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-
Q 036290          635 AMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-  713 (796)
Q Consensus       635 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-  713 (796)
                      |.+.++++.+.. +.+...+..+...|...|++++|...|+++...  .++++.++..++..+...|+ .+|+++++++ 
T Consensus       755 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~  830 (899)
T TIGR02917       755 AVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKAL  830 (899)
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence            888888877732 225666777777777888888888888887733  12336777778888888888 7788887776 


Q ss_pred             CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290          714 PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK  761 (796)
Q Consensus       714 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  761 (796)
                      ...| ++.++..+...+...|++++|...++++++.+|.++.++..++.
T Consensus       831 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~  879 (899)
T TIGR02917       831 KLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLAL  879 (899)
T ss_pred             hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence            3344 44566777777788888888888888888888887777666543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=3.2e-36  Score=358.70  Aligned_cols=687  Identities=12%  Similarity=0.015  Sum_probs=546.2

Q ss_pred             hhHHHHHhhhhccCChhhHHHHHHHHHHhCCCCCchhhHHHHHHHHccCChhHHHHHhcccCC---CCcchHHHHHHHHH
Q 036290           45 IFLAKSLSLSENLKSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAE---RNLVSWTLIVSAAI  121 (796)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~  121 (796)
                      ..+..+...+...+++..|..+++.+.+.. +++...+..+...+.+.|+++.|...|++...   .+..+|..+...+.
T Consensus       160 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~  238 (899)
T TIGR02917       160 YAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILI  238 (899)
T ss_pred             hhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            345555555556666666666666655432 23444555555555666666666666655422   23334445555555


Q ss_pred             hcCCchHHHHHHHHHHHCCC--------------------------------CCCc-ccHHHHHHHHhccCChhHHHHHH
Q 036290          122 QNGEFDMGLKMYVDMKTNGF--------------------------------MPNE-FAVGSVMKVCVSMGASEFGYSIH  168 (796)
Q Consensus       122 ~~~~~~~a~~~~~~m~~~~~--------------------------------~p~~-~t~~~ll~~~~~~~~~~~a~~~~  168 (796)
                      ..|++++|...++++.+...                                .|+. ..+..+...+...|+.+.|...+
T Consensus       239 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~  318 (899)
T TIGR02917       239 EAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYL  318 (899)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHH
Confidence            55555555555554443221                                1221 12222334455677777777777


Q ss_pred             HHHHHhcCCCChhHhhHHHHHHHccCChhHHHHHhhccCC---CCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 036290          169 CFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISS---DDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMD  245 (796)
Q Consensus       169 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  245 (796)
                      +.+.+..+ .+...+..+...+.+.|++++|...++.+.+   .+...++.+...+.+.|++++|.++|+++.+.. +.+
T Consensus       319 ~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~  396 (899)
T TIGR02917       319 NQILKYAP-NSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PEN  396 (899)
T ss_pred             HHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCC
Confidence            77776543 3566777888899999999999999998764   355678889999999999999999999998753 235


Q ss_pred             HhhHHHHHHhhccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCC---CCcchHHHHHHHH
Q 036290          246 KYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMAD---KDVISWNTLFGGF  322 (796)
Q Consensus       246 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~  322 (796)
                      ...+..+...+...|++++|...+..+.+.... .......++..+.+.|++++|..+++.+..   ++...|+.+...+
T Consensus       397 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  475 (899)
T TIGR02917       397 AAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIY  475 (899)
T ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            566777777888999999999999999877633 334556778889999999999999999865   3667899999999


Q ss_pred             HhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH
Q 036290          323 SENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAH  402 (796)
Q Consensus       323 ~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~  402 (796)
                      ...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+..++..+...+.+.|+.++|.
T Consensus       476 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~  553 (899)
T TIGR02917       476 LGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAV  553 (899)
T ss_pred             HhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999998753 2234566777888899999999999999998765 456788899999999999999999


Q ss_pred             HHHHhCCC---CChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCC
Q 036290          403 SVFDNVSY---KNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGF  479 (796)
Q Consensus       403 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  479 (796)
                      ..|+++..   .+...+..++..+...|++++|..+++++... .+.+..+|..+...+...|+++.|...++.+.+.. 
T Consensus       554 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-  631 (899)
T TIGR02917       554 AWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-  631 (899)
T ss_pred             HHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence            99998854   35667888999999999999999999999875 35567889999999999999999999999998876 


Q ss_pred             CCCchhHhHHHHHHHhcCCcchHHHHHhcCCC---CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036290          480 SSCGYICSSLIKSYVNFGQLDNSFEFSNGAER---LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTIL  556 (796)
Q Consensus       480 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll  556 (796)
                      +.+...+..+...+...|++++|...++++.+   .+..++..++..+...|++++|.++++.+.+.+ +++...+..+.
T Consensus       632 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~  710 (899)
T TIGR02917       632 PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEG  710 (899)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHH
Confidence            56778889999999999999999999988765   357789999999999999999999999998875 56777888888


Q ss_pred             HHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHH
Q 036290          557 NSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSE  634 (796)
Q Consensus       557 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~  634 (796)
                      ..+...|+++.|.+.++.+...+..  ..++..+..++.+.|++++|.+.+++.+..  .+...+..+...|...|++++
T Consensus       711 ~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~  788 (899)
T TIGR02917       711 DLYLRQKDYPAAIQAYRKALKRAPS--SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDK  788 (899)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCCC--chHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence            9999999999999999999887644  467778999999999999999999776654  478889999999999999999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          635 AMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       635 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      |.++|+++.+.. +++...+..+...+...|+ ++|+.+++++.   ...|+ +..+..+..++...|++++|.+.++++
T Consensus       789 A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  863 (899)
T TIGR02917       789 AIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKAL---KLAPNIPAILDTLGWLLVEKGEADRALPLLRKA  863 (899)
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHH---hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999853 3377789999999999999 88999999998   34565 677888999999999999999999999


Q ss_pred             -CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 036290          714 -PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLL  747 (796)
Q Consensus       714 -~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  747 (796)
                       ...| +..++..+..++.+.|+.++|+++++++++
T Consensus       864 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  899 (899)
T TIGR02917       864 VNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN  899 (899)
T ss_pred             HhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence             3344 778999999999999999999999999874

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.96  E-value=6e-24  Score=252.33  Aligned_cols=650  Identities=11%  Similarity=0.000  Sum_probs=392.2

Q ss_pred             hhHHHHHhhhhccCChhhHHHHHHHHHHhCCCCCchhhHHHHHHHHccCChhHHHHHhcccCC--CCcchH---------
Q 036290           45 IFLAKSLSLSENLKSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAE--RNLVSW---------  113 (796)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~---------  113 (796)
                      ..+....+.+-..++...|.+.++++.... +.|+.++..++..+.+.|+.++|.+.+++..+  |+...+         
T Consensus        29 ~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~  107 (1157)
T PRK11447         29 QQLLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLL  107 (1157)
T ss_pred             HHHHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Confidence            346667788888889999999999886542 33677888899999999999999999998754  433221         


Q ss_pred             --------HHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcc-cHHHHHHHHhccCChhHHHHHHHHHHHhcCCCChhHhh
Q 036290          114 --------TLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEF-AVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGC  184 (796)
Q Consensus       114 --------~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~  184 (796)
                              ..+.+.+.+.|++++|+..|+++.+.+ +|+.. ............|+.++|...++.+.+..+. +...+.
T Consensus       108 ~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~  185 (1157)
T PRK11447        108 STPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRN  185 (1157)
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHH
Confidence                    233345778899999999999987653 33322 1111122223458888999999988887633 566777


Q ss_pred             HHHHHHHccCChhHHHHHhhccCCCCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHh-hHHHHHHhhccCCCch
Q 036290          185 SVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKY-TFINALQGCSLVADFD  263 (796)
Q Consensus       185 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~  263 (796)
                      .+...+...|+.++|+..|+++......             +...+...++.+...+..+... .+...+..+-......
T Consensus       186 ~LA~ll~~~g~~~eAl~~l~~~~~~~~~-------------~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~  252 (1157)
T PRK11447        186 TLALLLFSSGRRDEGFAVLEQMAKSPAG-------------RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVA  252 (1157)
T ss_pred             HHHHHHHccCCHHHHHHHHHHHhhCCCc-------------hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHH
Confidence            8888888889999999988877542211             0111111222222222222211 1222222222223344


Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCC--C-CcchHHHHHHHHHhCCCccHHHHHHHHHHH
Q 036290          264 IGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMAD--K-DVISWNTLFGGFSENKNPGQTASLFHKFIL  340 (796)
Q Consensus       264 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~l~~~m~~  340 (796)
                      .+...+....+....|+... ...-..+...|++++|+..|++..+  | +...+..+...+.+.|++++|+..|++..+
T Consensus       253 ~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~  331 (1157)
T PRK11447        253 AARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALA  331 (1157)
T ss_pred             HHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45555555443333333221 2234456677888888888887654  3 566777888888888888888888888776


Q ss_pred             cCCCCCc-chHHH------------HHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHh
Q 036290          341 SGSRPNH-VTFSI------------LLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDN  407 (796)
Q Consensus       341 ~g~~p~~-~t~~~------------ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~  407 (796)
                      ....... ..+..            .-..+.+.|++++|...++.+.+.. +.+...+..+...+...|++++|++.|++
T Consensus       332 ~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~  410 (1157)
T PRK11447        332 LDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQ  410 (1157)
T ss_pred             hCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            4321111 11111            1223456677777777777766653 23445555666777777777777777766


Q ss_pred             CCC--C-ChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcc--------cHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Q 036290          408 VSY--K-NITTWNELLSGYCFNCCDADVLKTFCNIWESGVEV--------NGCTFFYVVETCCRSENQQMVGQIHGAIIK  476 (796)
Q Consensus       408 ~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~  476 (796)
                      ..+  | +...+..+...+. .++.++|+.+++.+.......        ....+......+...|++++|.+.++...+
T Consensus       411 aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~  489 (1157)
T PRK11447        411 ALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA  489 (1157)
T ss_pred             HHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            653  2 3334444555443 345666666665543221000        001122233334444555555555555544


Q ss_pred             hCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCC--C-CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 036290          477 TGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAER--L-DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILG  553 (796)
Q Consensus       477 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~  553 (796)
                      .. |.++..+..+...|.+.|++++|...++.+.+  | +...+..+...+...++.++|+..++.+......++...+.
T Consensus       490 ~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~  568 (1157)
T PRK11447        490 LD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELA  568 (1157)
T ss_pred             hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHH
Confidence            43 23334444444445555555555444444322  1 22222222223334444444444444432211111100000


Q ss_pred             HHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChH
Q 036290          554 TILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVS  633 (796)
Q Consensus       554 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  633 (796)
                                         ..       .....+..+...+...|+.++|.++++ . ..++...+..+...+.+.|+++
T Consensus       569 -------------------~~-------l~~~~~l~~a~~l~~~G~~~eA~~~l~-~-~p~~~~~~~~La~~~~~~g~~~  620 (1157)
T PRK11447        569 -------------------QR-------LQSDQVLETANRLRDSGKEAEAEALLR-Q-QPPSTRIDLTLADWAQQRGDYA  620 (1157)
T ss_pred             -------------------HH-------HhhhHHHHHHHHHHHCCCHHHHHHHHH-h-CCCCchHHHHHHHHHHHcCCHH
Confidence                               00       001123345677888999999999994 2 2235566778888899999999


Q ss_pred             HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHH
Q 036290          634 EAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIE  711 (796)
Q Consensus       634 ~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~  711 (796)
                      +|++.|++..+  ..| +...+..+...+...|++++|++.++.+.   ...|+ ...+..+..++...|++++|.++++
T Consensus       621 ~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll---~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~  695 (1157)
T PRK11447        621 AARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAKLP---ATANDSLNTQRRVALAWAALGDTAAAQRTFN  695 (1157)
T ss_pred             HHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh---ccCCCChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            99999999998  567 66778888999999999999999999877   45665 6667778889999999999999999


Q ss_pred             hC-CCCC-------CHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 036290          712 IM-PFQP-------SPTVYRSLLSGCRIHGNKELGEWASEKLLL  747 (796)
Q Consensus       712 ~~-~~~p-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  747 (796)
                      ++ ...|       +...+..+...+...|++++|++.+++++.
T Consensus       696 ~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        696 RLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             HHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            87 2222       224566677888999999999999999985

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.95  E-value=2.2e-22  Score=239.02  Aligned_cols=605  Identities=9%  Similarity=0.016  Sum_probs=406.8

Q ss_pred             HHHHHHHhcCCchHHHHHHHHHHHCCCCC-CcccHHHHHHHHhccCChhHHHHHHHHHHHhcCCCChh------------
Q 036290          115 LIVSAAIQNGEFDMGLKMYVDMKTNGFMP-NEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPF------------  181 (796)
Q Consensus       115 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~------------  181 (796)
                      ..++.+...++.+.|.+.++++...  .| |+..+..+...+.+.|+.++|.+.++.+.+..+.....            
T Consensus        33 ~q~~~~~~~~~~d~a~~~l~kl~~~--~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~  110 (1157)
T PRK11447         33 EQVRLGEATHREDLVRQSLYRLELI--DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTP  110 (1157)
T ss_pred             HHHHHHHhhCChHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCC
Confidence            3456677889999999999998864  34 45567777888889999999999999998887543221            


Q ss_pred             ---HhhHHHHHHHccCChhHHHHHhhccCCCCceeHHH---HH-HHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 036290          182 ---VGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNA---MI-GGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQ  254 (796)
Q Consensus       182 ---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~  254 (796)
                         ....+...+.+.|++++|.+.|+...+.+......   .. ......|+.++|++.|+++.+.. +-+......+-.
T Consensus       111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~  189 (1157)
T PRK11447        111 EGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLAL  189 (1157)
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence               01222335666677777777776655422111110   11 11123466777777777766543 223444555555


Q ss_pred             hhccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCC-----CCcchHHHHHHHHHhCCCcc
Q 036290          255 GCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMAD-----KDVISWNTLFGGFSENKNPG  329 (796)
Q Consensus       255 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~  329 (796)
                      .+...|+.++|.+.++.+.+..... .                ..+...++.+..     .....+...+..+-......
T Consensus       190 ll~~~g~~~eAl~~l~~~~~~~~~~-~----------------~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~  252 (1157)
T PRK11447        190 LLFSSGRRDEGFAVLEQMAKSPAGR-D----------------AAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVA  252 (1157)
T ss_pred             HHHccCCHHHHHHHHHHHhhCCCch-H----------------HHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHH
Confidence            5666667777777666664432100 0                000001111000     01112222222222223344


Q ss_pred             HHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036290          330 QTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVS  409 (796)
Q Consensus       330 ~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~  409 (796)
                      .|...+..+......|+... ...-..+...|++++|...|+...+.. +.+...+..+...+.+.|++++|+..|++..
T Consensus       253 ~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al  330 (1157)
T PRK11447        253 AARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKAL  330 (1157)
T ss_pred             HHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            55555655544322333221 122344566788888888888887753 3466777888888888888888888887765


Q ss_pred             C--CCh---hhHHH------------HHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHH
Q 036290          410 Y--KNI---TTWNE------------LLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHG  472 (796)
Q Consensus       410 ~--~~~---~~~~~------------li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~  472 (796)
                      +  |+.   ..|..            ....+.+.|++++|...|++..+.. +.+...+..+-..+...|++++|.+.++
T Consensus       331 ~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~  409 (1157)
T PRK11447        331 ALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQ  409 (1157)
T ss_pred             HhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            3  221   11221            2345678899999999999988853 2345566677788888999999999999


Q ss_pred             HHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCC------------HhhHHHHHHHHHHcCChhHHHHHHHHH
Q 036290          473 AIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLD------------MASWGAMMSALVHQGHNHEAVTIFHSL  540 (796)
Q Consensus       473 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~~~~~~A~~~~~~m  540 (796)
                      .+.+.. +.+...+..+...|. .++.++|..+++.+....            ...+..+...+...|++++|++.|++.
T Consensus       410 ~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~A  487 (1157)
T PRK11447        410 QALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQR  487 (1157)
T ss_pred             HHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            998875 455666777777774 457889988888765421            123455667788899999999999999


Q ss_pred             HHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC---Ch-
Q 036290          541 VEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSN---DV-  616 (796)
Q Consensus       541 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~-  616 (796)
                      .+.. +-+...+..+...+.+.|++++|...++.+.+.... +...+..+...+...++.++|...++......   +. 
T Consensus       488 l~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~  565 (1157)
T PRK11447        488 LALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQ  565 (1157)
T ss_pred             HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHH
Confidence            8763 234566777888899999999999999998875543 44445555566778899999999994433221   11 


Q ss_pred             --------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-c
Q 036290          617 --------IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-P  687 (796)
Q Consensus       617 --------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~  687 (796)
                              ..+..+...+...|+.++|.++++.     .+++...+..+...+.+.|++++|+..|+++.   ...|+ +
T Consensus       566 ~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al---~~~P~~~  637 (1157)
T PRK11447        566 ELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVL---TREPGNA  637 (1157)
T ss_pred             HHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH
Confidence                    1223456778899999999999872     23466677788889999999999999999998   44666 7


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc
Q 036290          688 DCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS-PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDA  754 (796)
Q Consensus       688 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  754 (796)
                      ..+..++.+|...|++++|.+.++.. ...|+ ..++..+..++...|++++|.++++++++..|+++.
T Consensus       638 ~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~  706 (1157)
T PRK11447        638 DARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP  706 (1157)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence            88899999999999999999999988 44554 466777888899999999999999999998877654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.94  E-value=3.4e-21  Score=217.64  Aligned_cols=263  Identities=12%  Similarity=-0.017  Sum_probs=206.1

Q ss_pred             CchhHhHHHHHHHhcCCcchHHHHHhcCCC--CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036290          482 CGYICSSLIKSYVNFGQLDNSFEFSNGAER--LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSC  559 (796)
Q Consensus       482 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~  559 (796)
                      +...+..+..++.. ++.++|...+.+...  |+......+...+...|++++|...|+++...  .|+...+..+..++
T Consensus       476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~al  552 (987)
T PRK09782        476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTA  552 (987)
T ss_pred             CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHH
Confidence            56777778888776 788888887666554  44333223344446889999999999987554  45555566677788


Q ss_pred             hccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-CChhHHHHHHHHHHhcCChHHHHHH
Q 036290          560 AAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-NDVIVYNTLIMAYAHHGLVSEAMEI  638 (796)
Q Consensus       560 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~  638 (796)
                      ...|+.+.|...++...+.... ....+..+.......|++++|...+++.+.. |+...|..+...+.+.|++++|+..
T Consensus       553 l~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~  631 (987)
T PRK09782        553 QAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSD  631 (987)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            8899999999999988876533 3333333444445669999999999777764 6788889999999999999999999


Q ss_pred             HHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 036290          639 FDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PF  715 (796)
Q Consensus       639 ~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~  715 (796)
                      +++..+  ..| +...+..+..++...|++++|+..+++..   ...|+ +..+..+..++...|++++|...+++. ..
T Consensus       632 l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL---~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l  706 (987)
T PRK09782        632 LRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAH---KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD  706 (987)
T ss_pred             HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            999998  667 55567777788899999999999999988   45676 788889999999999999999999988 66


Q ss_pred             CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 036290          716 QPSP-TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKND  753 (796)
Q Consensus       716 ~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  753 (796)
                      .|+. .+.........+..++..|.+.+++.+..+|+..
T Consensus       707 ~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~  745 (987)
T PRK09782        707 IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS  745 (987)
T ss_pred             CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence            7765 5666777778888899999999999999999877

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.94  E-value=6.8e-21  Score=215.22  Aligned_cols=667  Identities=11%  Similarity=-0.015  Sum_probs=404.4

Q ss_pred             hhHHHHHhhhhccCChhhHHHHHHHHHHhCCCCCc--hhhHHHHHHHH--ccCChhHHHHHhcccCC--C-CcchHHHHH
Q 036290           45 IFLAKSLSLSENLKSRVLGTQVHGHIVKLGFTNDI--FLQNNLIAMYS--KCGYFGWGLRVFDEMAE--R-NLVSWTLIV  117 (796)
Q Consensus        45 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~--~~g~~~~A~~~~~~~~~--~-~~~~~~~ll  117 (796)
                      .+|..+|-+|.-..... +.++.....+.++.|=-  .++..+..++.  ..|++++|...|++..+  | +..++..+.
T Consensus         7 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA   85 (987)
T PRK09782          7 IGWSGLLLTSLLSTSAL-ADNIGTSAEELGLSDYRHFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLA   85 (987)
T ss_pred             cCchHHHHHHHhccHhh-hhhcccccccCCCchHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            35555555554433221 22222233333333311  23344444433  44999999999988643  3 356788889


Q ss_pred             HHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhcCCCChhHhhHHHHH--------
Q 036290          118 SAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNF--------  189 (796)
Q Consensus       118 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--------  189 (796)
                      ..|.+.|+.++|...+++..+.  .|+...|..++..+   ++.+.|..+++++.+..+. +..++..+...        
T Consensus        86 ~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~  159 (987)
T PRK09782         86 EAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALR  159 (987)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhh
Confidence            9999999999999999998875  45555555555333   8888888999998887643 33444444443        


Q ss_pred             HHccCChhHHHHHhhccCCCC--ceeHH-HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhcc-CCCchHH
Q 036290          190 YAKLGDVAAAERVFYSISSDD--VGCWN-AMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSL-VADFDIG  265 (796)
Q Consensus       190 ~~~~g~~~~A~~~~~~~~~~~--~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a  265 (796)
                      |.+.++..+++.  .....++  ..... .+...|.+.|++++|+++++.+.+.+.. +..-...+-.++.. .++ +.+
T Consensus       160 y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a  235 (987)
T PRK09782        160 LAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRL  235 (987)
T ss_pred             hhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHH
Confidence            777666666666  3333333  33233 3377888888888888888888887643 33334444445555 345 555


Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCC-----CCcchHHHHHHHHHhCCCcc-HHHHHHHHHH
Q 036290          266 RQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMAD-----KDVISWNTLFGGFSENKNPG-QTASLFHKFI  339 (796)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~-~a~~l~~~m~  339 (796)
                      ..++..    .+..++.+..++...|.+.|+.++|.++++++..     |+..+|--+   +.+.+... .|..-|.+  
T Consensus       236 ~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~---l~r~~~~~~~~~~~~~~--  306 (987)
T PRK09782        236 LALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYL---LSKYSANPVQALANYTV--  306 (987)
T ss_pred             HHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHH---HHhccCchhhhccchhh--
Confidence            555332    3335667777777777777887777777777653     222233222   33333332 11111111  


Q ss_pred             HcCCCCCcc-hHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH--hcCChHHHHHHHHhCCCC---Ch
Q 036290          340 LSGSRPNHV-TFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFC--RCGAVEMAHSVFDNVSYK---NI  413 (796)
Q Consensus       340 ~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~--~~g~~~~A~~~~~~~~~~---~~  413 (796)
                        ...++.. ....++..+.+.++++.+.++..      +.|....  ..++...  ..+...++...+..|-+.   +.
T Consensus       307 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~  376 (987)
T PRK09782        307 --QFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEM--LEERYAVSVATRNKAEALRLARLLYQQEPANL  376 (987)
T ss_pred             --hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcCCCCH
Confidence              0011110 11122444455555554443321      2232222  1222211  123444444444444322   23


Q ss_pred             hhHHHHHHHHHhcCCchHHHHHHHHHHhc-C-CcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHH
Q 036290          414 TTWNELLSGYCFNCCDADVLKTFCNIWES-G-VEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIK  491 (796)
Q Consensus       414 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  491 (796)
                      ...-.+.-...+.|+.++|.++|+..... + ..++.....-++..+.+.+.+....++..-.    -+++...-..+  
T Consensus       377 ~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~--  450 (987)
T PRK09782        377 TRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILS----KPLPLAEQRQW--  450 (987)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhc----cccccchhHHH--
Confidence            33333333344556666666666655541 1 2223333334455555444422222221111    00111111000  


Q ss_pred             HHHhcCCc---chHHHHHhcCCC---C--CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 036290          492 SYVNFGQL---DNSFEFSNGAER---L--DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIG  563 (796)
Q Consensus       492 ~~~~~g~~---~~A~~~~~~~~~---~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~  563 (796)
                          .|+.   ..+...+.....   .  +...|..+..++.. +++++|...+.+....  .|+......+...+...|
T Consensus       451 ----~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~G  523 (987)
T PRK09782        451 ----QSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVE  523 (987)
T ss_pred             ----HhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCC
Confidence                1111   112222222221   2  56677777777776 8999999988887765  577655444455567899


Q ss_pred             chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHHH
Q 036290          564 AYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIFDK  641 (796)
Q Consensus       564 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~  641 (796)
                      +++.|...++.+...  .|+...+..+..++.+.|+.++|.+.+++.+.. | +...+..+.......|++++|...+++
T Consensus       524 r~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~  601 (987)
T PRK09782        524 DYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTR  601 (987)
T ss_pred             CHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            999999999987554  334455667788899999999999999766654 2 323333333444556999999999999


Q ss_pred             HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-C
Q 036290          642 MKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-S  718 (796)
Q Consensus       642 m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~  718 (796)
                      ..+  ..|+...+..+...+.+.|++++|+..+++..   ...|+ ...+..+..++...|++++|++.+++. ...| +
T Consensus       602 AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL---~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~  676 (987)
T PRK09782        602 SLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAAL---ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD  676 (987)
T ss_pred             HHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            998  67888889999999999999999999999998   56787 778889999999999999999999988 5566 5


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290          719 PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK  761 (796)
Q Consensus       719 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  761 (796)
                      ...+..+..++...|++++|+..++++++++|++........+
T Consensus       677 ~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~  719 (987)
T PRK09782        677 PALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPE  719 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhH
Confidence            5788999999999999999999999999999998888766665

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.86  E-value=2.2e-18  Score=172.01  Aligned_cols=370  Identities=15%  Similarity=0.113  Sum_probs=272.6

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHHhCCC---CChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHH
Q 036290          381 EENVTSSLIYMFCRCGAVEMAHSVFDNVSY---KNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVET  457 (796)
Q Consensus       381 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~  457 (796)
                      -..+|..+...+-..|++++|...++.+.+   ..+..|.-+..++...|+.+.|.+.|.+..+  +.|+.....+-+.-
T Consensus       115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgn  192 (966)
T KOG4626|consen  115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGN  192 (966)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhH
Confidence            455667777777777777777777777664   2455777777777778888888777777666  55665544443333


Q ss_pred             h-cccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCC---HhhHHHHHHHHHHcCChhHH
Q 036290          458 C-CRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLD---MASWGAMMSALVHQGHNHEA  533 (796)
Q Consensus       458 ~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A  533 (796)
                      + ...|++++|...+.+.++.. +--...++.|...+...|+...|+.-|++....|   ...|-.|...|...+.+++|
T Consensus       193 Llka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A  271 (966)
T KOG4626|consen  193 LLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA  271 (966)
T ss_pred             HHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH
Confidence            2 33567777777777766654 3334566777777778888888888887776643   34566777788888888888


Q ss_pred             HHHHHHHHHcCCCCCH-HHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC
Q 036290          534 VTIFHSLVEAGEKPDE-YILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFN  612 (796)
Q Consensus       534 ~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  612 (796)
                      +..+.+....  .|+. ..+..+...|...|..+.|...+++..+.... -...|+.|..++-..|++.+|.+.+.+.+.
T Consensus       272 vs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~  348 (966)
T KOG4626|consen  272 VSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALR  348 (966)
T ss_pred             HHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence            8888776644  5543 45555656677788888888888877765443 345788888888888888888888876665


Q ss_pred             C--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-ch
Q 036290          613 S--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPS-QATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PD  688 (796)
Q Consensus       613 ~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~  688 (796)
                      -  ......+.|...|...|.+++|..+|....+  +.|. ...++.|...|-++|++++|+..+++..   .+.|+ ..
T Consensus       349 l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAd  423 (966)
T KOG4626|consen  349 LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFAD  423 (966)
T ss_pred             hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHH
Confidence            4  3556778888888888888888888888887  6674 4457788888888888888888888887   67888 78


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290          689 CYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP-TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK  761 (796)
Q Consensus       689 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  761 (796)
                      .|+.+...|-..|+.+.|++.+.+. ...|.. ...+.|...+...|+..+|++.++.+++++|+.+.++-.|.-
T Consensus       424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh  498 (966)
T KOG4626|consen  424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLH  498 (966)
T ss_pred             HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHH
Confidence            8888888888888888888888877 666754 567788888888888888888888888888888888765543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.84  E-value=8.4e-16  Score=162.32  Aligned_cols=551  Identities=13%  Similarity=0.067  Sum_probs=326.5

Q ss_pred             hhHHHHHhhccCCCCceeHHHHH-HHH--HhCCCchHHHHHHHHHHH--CCCCCCHhhHHHHHHhhccCCCchHHHHHHH
Q 036290          196 VAAAERVFYSISSDDVGCWNAMI-GGY--AHCGYGFEALNVVSSMLF--EGITMDKYTFINALQGCSLVADFDIGRQIHG  270 (796)
Q Consensus       196 ~~~A~~~~~~~~~~~~~~~~~li-~~~--~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  270 (796)
                      ++.|.+.|....+.+..-.-.|+ .++  -..|++..|+.+|+....  ...+||...-  +-..+.+.++.+.|...|.
T Consensus       146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~a~~  223 (1018)
T KOG2002|consen  146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKALLAFE  223 (1018)
T ss_pred             HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHHHHHH
Confidence            35565555555432222111222 222  234566667766666433  2233333211  1122235566666666666


Q ss_pred             HHHHhcCCCChHHHHHHHHhhhc---CCCHHHHHHHHhhcC---CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCC
Q 036290          271 LIIRSEVECSISIVNALIDMYIK---SSGMDYAFKVFERMA---DKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSR  344 (796)
Q Consensus       271 ~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~  344 (796)
                      ...+.+. .++..+-.|--.-..   ...+..+...+...-   ..|++..+.|...+.-.|++..++.+...+...-..
T Consensus       224 ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~  302 (1018)
T KOG2002|consen  224 RALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN  302 (1018)
T ss_pred             HHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence            6665542 122222221111111   122334444444332   236667777777777777777777777777654211


Q ss_pred             --CCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCChHHHHHHHHhCCC--C-ChhhHH
Q 036290          345 --PNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEEN--VTSSLIYMFCRCGAVEMAHSVFDNVSY--K-NITTWN  417 (796)
Q Consensus       345 --p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~  417 (796)
                        .-...|-.+-+++-..|++++|..+|-...+.  .++..  .+--|..+|.+.|+++.+...|+.+..  | +..+.-
T Consensus       303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~  380 (1018)
T KOG2002|consen  303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMK  380 (1018)
T ss_pred             hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHH
Confidence              11234556667777777888877777665554  23332  234567778888888888888877754  3 334555


Q ss_pred             HHHHHHHhcC----CchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHH----HHHHhCCCCCchhHhHH
Q 036290          418 ELLSGYCFNC----CDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHG----AIIKTGFSSCGYICSSL  489 (796)
Q Consensus       418 ~li~~~~~~g----~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~l  489 (796)
                      ++...|...+    ..+.|..++.+....- +.|...|..+-..+-..+- -.....+.    .+...+.++.+...|.+
T Consensus       381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNv  458 (1018)
T KOG2002|consen  381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNNV  458 (1018)
T ss_pred             HHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhH
Confidence            5555555554    3455555555554431 3344455544444443332 22244443    33455666778888888


Q ss_pred             HHHHHhcCCcchHHHHHhcCCC-------CCHh------hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH-HHHH
Q 036290          490 IKSYVNFGQLDNSFEFSNGAER-------LDMA------SWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYI-LGTI  555 (796)
Q Consensus       490 ~~~~~~~g~~~~A~~~~~~~~~-------~~~~------~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t-~~~l  555 (796)
                      ...+...|+++.|...|+....       +|..      +--.+...+-..++++.|.+.|..+...  .|+-+. |.-+
T Consensus       459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl  536 (1018)
T KOG2002|consen  459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRL  536 (1018)
T ss_pred             HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHh
Confidence            8888888888888887776543       2221      1112334444557888888888888765  455433 2222


Q ss_pred             HHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH----hccCCCCChhHHHHHHHHHH----
Q 036290          556 LNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAF----DQSFNSNDVIVYNTLIMAYA----  627 (796)
Q Consensus       556 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~~~~~~~~~~~~~li~~~~----  627 (796)
                      .-.....++...|...++......-. ++..++.+...+.+...+.-|.+-|    .+....+|..+.-+|.+.|.    
T Consensus       537 ~~ma~~k~~~~ea~~~lk~~l~~d~~-np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~  615 (1018)
T KOG2002|consen  537 GCMARDKNNLYEASLLLKDALNIDSS-NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH  615 (1018)
T ss_pred             hHHHHhccCcHHHHHHHHHHHhcccC-CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc
Confidence            21222335667777777766663322 3444555566777777777776644    22223345555555555443    


Q ss_pred             --------hcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHH
Q 036290          628 --------HHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLS  698 (796)
Q Consensus       628 --------~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~  698 (796)
                              ..+..++|+++|.+.+.  ..| |...-+.+.-.++..|++.+|..+|.++....  .-...+|-.+.++|.
T Consensus       616 ~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~  691 (1018)
T KOG2002|consen  616 NPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYV  691 (1018)
T ss_pred             ccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHH
Confidence                    23457788888888887  566 77777777778888999999999999888552  223556778899999


Q ss_pred             hcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEec
Q 036290          699 RNGYLEDAKHVIEIM----PFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLS  760 (796)
Q Consensus       699 ~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~  760 (796)
                      .+|++..|+++|+..    ....+..+...|..++...|.+.+|.+.+..+....|.++.....++
T Consensus       692 e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a  757 (1018)
T KOG2002|consen  692 EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLA  757 (1018)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHH
Confidence            999999999998876    23446678888889988999999999999999999998888554443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.82  E-value=3.2e-17  Score=163.84  Aligned_cols=433  Identities=13%  Similarity=0.084  Sum_probs=309.4

Q ss_pred             HHHHHhhhcCCCHHHHHHHHhhcCCCCc---chHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccC
Q 036290          285 NALIDMYIKSSGMDYAFKVFERMADKDV---ISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLL  361 (796)
Q Consensus       285 ~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~  361 (796)
                      ..|..-..+.|++.+|++.....-+.|.   ...-.+-..+.+..+.+....--....+. ...-..+|..+-..+...|
T Consensus        52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg  130 (966)
T KOG4626|consen   52 LELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERG  130 (966)
T ss_pred             HHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhc
Confidence            3444445566777777766655543211   11111112333334444333222221111 1223456666666666677


Q ss_pred             ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCC--CChhhHHHHH-HHHHhcCCchHHHHHHHH
Q 036290          362 DLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSY--KNITTWNELL-SGYCFNCCDADVLKTFCN  438 (796)
Q Consensus       362 ~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~g~~~~a~~~~~~  438 (796)
                      +++.|+.+++.+.+.. +.....|..+..++...|+.+.|...|.+..+  |+.....+-+ ..+-..|+.++|...|.+
T Consensus       131 ~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlk  209 (966)
T KOG4626|consen  131 QLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLK  209 (966)
T ss_pred             hHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHH
Confidence            7777777777766643 23455666677777777777777777766654  4333332222 233346777777777766


Q ss_pred             HHhcCCccc-HHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCC---CCH
Q 036290          439 IWESGVEVN-GCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAER---LDM  514 (796)
Q Consensus       439 m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~  514 (796)
                      ..+.  .|. ...|+.+-..+-..|+...|..-|++.++.. |--...|-.|...|...+.++.|...+.+...   ...
T Consensus       210 Ai~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A  286 (966)
T KOG4626|consen  210 AIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA  286 (966)
T ss_pred             HHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch
Confidence            6553  332 3345556566666777777777777776654 33466788888888888999998888776543   356


Q ss_pred             hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 036290          515 ASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPD-EYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDA  593 (796)
Q Consensus       515 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  593 (796)
                      ..+..+...|-..|..+-|+..+++..+.  +|+ +..|+.+..++-..|++.+|.+.+......... .....+.|...
T Consensus       287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni  363 (966)
T KOG4626|consen  287 VAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNI  363 (966)
T ss_pred             hhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence            67888888888999999999999998765  555 468999999999999999999999998887655 56677889999


Q ss_pred             HHhcCCHHHHHHHHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHH
Q 036290          594 YAKCGDIKGARMAFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQ-ATFVSVMSACSHKGLVDKG  670 (796)
Q Consensus       594 ~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~A  670 (796)
                      |...|.+++|..+|...+.- | -....+.|...|.+.|++++|+..|++...  ++|+. ..|+.+-..|-..|+++.|
T Consensus       364 ~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A  441 (966)
T KOG4626|consen  364 YREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAA  441 (966)
T ss_pred             HHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHH
Confidence            99999999999999777665 3 456788999999999999999999999998  89954 5788999999999999999


Q ss_pred             HHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHH
Q 036290          671 CLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP-TVYRSLLSGCR  730 (796)
Q Consensus       671 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~  730 (796)
                      .+.+.+..   .+.|. .+..+.|..+|-..|++.+|+.-+++. +++||. ..|-.++.+..
T Consensus       442 ~q~y~rAI---~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq  501 (966)
T KOG4626|consen  442 IQCYTRAI---QINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQ  501 (966)
T ss_pred             HHHHHHHH---hcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHH
Confidence            99999998   78898 889999999999999999999999988 788886 46666666643

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.82  E-value=1.2e-15  Score=146.21  Aligned_cols=444  Identities=11%  Similarity=0.084  Sum_probs=296.5

Q ss_pred             ceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchH--H-HHHHHHHHHhcCCCChHHHHHH
Q 036290          211 VGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDI--G-RQIHGLIIRSEVECSISIVNAL  287 (796)
Q Consensus       211 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~--a-~~~~~~~~~~~~~~~~~~~~~l  287 (796)
                      +.+-|.|+. +...|..+++.-+|+.|.+.|+..+...-..+++..+-.+...-  + .+.|-.|.+.|-. +..+    
T Consensus       116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~s----  189 (625)
T KOG4422|consen  116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSS----  189 (625)
T ss_pred             hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-cccc----
Confidence            445566655 45678899999999999999999888877777776544333222  1 2223333333322 2222    


Q ss_pred             HHhhhcCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHH
Q 036290          288 IDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGL  367 (796)
Q Consensus       288 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~  367 (796)
                          .+.|++.+  -+|+ ...+...+|..+|.++|+--..+.|.++|++-.....+.+..+||.+|.+..-.    ...
T Consensus       190 ----WK~G~vAd--L~~E-~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K  258 (625)
T KOG4422|consen  190 ----WKSGAVAD--LLFE-TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGK  258 (625)
T ss_pred             ----cccccHHH--HHHh-hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccH
Confidence                34555544  3444 444566799999999999999999999999999998999999999999876543    338


Q ss_pred             HHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCccc
Q 036290          368 QLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVN  447 (796)
Q Consensus       368 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~  447 (796)
                      ++..+|....+.||..|+|+++.+..+.|+++.|.+.                           |++++.+|++-|+.|.
T Consensus       259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePs  311 (625)
T KOG4422|consen  259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPS  311 (625)
T ss_pred             HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcc
Confidence            8999999999999999999999999999999987754                           5666777777777777


Q ss_pred             HHHHHHHHHHhcccCcHH-HHHHHHHHHHH----hCCC----CCchhHhHHHHHHHhcCCcchHHHHHhcCCC-------
Q 036290          448 GCTFFYVVETCCRSENQQ-MVGQIHGAIIK----TGFS----SCGYICSSLIKSYVNFGQLDNSFEFSNGAER-------  511 (796)
Q Consensus       448 ~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~----~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------  511 (796)
                      ..+|..+|.-.++.++.. .+..++.++..    ..+.    .+...|..-+..+.+..+.+-|.++-.-...       
T Consensus       312 LsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~i  391 (625)
T KOG4422|consen  312 LSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFI  391 (625)
T ss_pred             hhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhc
Confidence            777777777666665542 23333333322    2222    2344455566666666666666554332221       


Q ss_pred             -C---CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHH
Q 036290          512 -L---DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVA  587 (796)
Q Consensus       512 -~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  587 (796)
                       +   ...-|..+....|+....+.-+..|+.|.-.-+-|+..+...++++....+.++-..++|..++..|........
T Consensus       392 g~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~  471 (625)
T KOG4422|consen  392 GPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR  471 (625)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH
Confidence             1   223466777888888999999999999988888899999999999999999999999999999988765444444


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036290          588 SAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAH--HGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKG  665 (796)
Q Consensus       588 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g  665 (796)
                      ..+...+++.             ...|+...-..+-.++++  ..-.+.....-.+|.+..+.|  ...+..+-.+.+.|
T Consensus       472 eeil~~L~~~-------------k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G  536 (625)
T KOG4422|consen  472 EEILMLLARD-------------KLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAG  536 (625)
T ss_pred             HHHHHHHhcC-------------CCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcc
Confidence            3333333322             222322211112111111  111223333445566544444  34555556678889


Q ss_pred             CHHHHHHHHHHhHhhcCCCCCchHHH---HHHHHHHhcCChHHHHHHHHhC
Q 036290          666 LVDKGCLLFKSMDSQYGMQPSPDCYG---CLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       666 ~~~~A~~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      ..++|.+++....+.+.-.|.....+   -+++.-.+..+...|...++-|
T Consensus       537 ~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a  587 (625)
T KOG4422|consen  537 RTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA  587 (625)
T ss_pred             hHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            99999999988866655555555555   4445556677788888887776

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.82  E-value=3.6e-15  Score=157.62  Aligned_cols=545  Identities=12%  Similarity=0.086  Sum_probs=305.2

Q ss_pred             hHHHHHHHHHHHCCCCCCcccHHHHHHHHh--ccCChhHHHHHHHHHHHhcC--CCChhHhhHHHHHHHccCChhHHHHH
Q 036290          127 DMGLKMYVDMKTNGFMPNEFAVGSVMKVCV--SMGASEFGYSIHCFALKIRI--EKNPFVGCSVLNFYAKLGDVAAAERV  202 (796)
Q Consensus       127 ~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~  202 (796)
                      +.|...|....+..  |+. ....+.+||.  ..+++..|..+|..+....+  .+|+.+  .+-..+.+.|+.+.|...
T Consensus       147 ~~A~a~F~~Vl~~s--p~N-il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a  221 (1018)
T KOG2002|consen  147 DDADAQFHFVLKQS--PDN-ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLA  221 (1018)
T ss_pred             HHHHHHHHHHHhhC--Ccc-hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHH
Confidence            56666666665542  221 2223334443  44566666666666555443  333333  233455566666666666


Q ss_pred             hhccCCCCceeHHHHHHHHH------hCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHHHHHHHHHHHhc
Q 036290          203 FYSISSDDVGCWNAMIGGYA------HCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSE  276 (796)
Q Consensus       203 ~~~~~~~~~~~~~~li~~~~------~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  276 (796)
                      |....+-|+.+-++++....      ....+..++.++...-..                                   .
T Consensus       222 ~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~-----------------------------------n  266 (1018)
T KOG2002|consen  222 FERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE-----------------------------------N  266 (1018)
T ss_pred             HHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh-----------------------------------c
Confidence            66666555544444432111      112233333333333221                                   1


Q ss_pred             CCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCCCC------cchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcch-
Q 036290          277 VECSISIVNALIDMYIKSSGMDYAFKVFERMADKD------VISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVT-  349 (796)
Q Consensus       277 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t-  349 (796)
                       .-++.+.+.|.+.|.-.|++..++.+...+...+      ..+|--+.++|-..|++++|...|-+-.+.  .||..+ 
T Consensus       267 -~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l  343 (1018)
T KOG2002|consen  267 -NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVL  343 (1018)
T ss_pred             -CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccc
Confidence             1233344444444444455555444444433211      123444555555555666655555444332  333322 


Q ss_pred             -HHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC----ChHHHHHHHHhCCCC---ChhhHHHHHH
Q 036290          350 -FSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCG----AVEMAHSVFDNVSYK---NITTWNELLS  421 (796)
Q Consensus       350 -~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~~li~  421 (796)
                       +--+-..+.+.|+++.+...|+...+.. +.+..+...|-..|...+    ..+.|..++.+...+   |...|-.+..
T Consensus       344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laq  422 (1018)
T KOG2002|consen  344 PLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQ  422 (1018)
T ss_pred             cccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence             2234444555556666655555555442 333444444444454443    344455555544432   3334444444


Q ss_pred             HHHhcCCchHHHHHHHHH----HhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHh---CCCCCc------hhHhH
Q 036290          422 GYCFNCCDADVLKTFCNI----WESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKT---GFSSCG------YICSS  488 (796)
Q Consensus       422 ~~~~~g~~~~a~~~~~~m----~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~  488 (796)
                      .+-+..-+ .++..|...    ...+-.+.....|.+-......|+++.|...+......   ...++.      .+--.
T Consensus       423 l~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN  501 (1018)
T KOG2002|consen  423 LLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN  501 (1018)
T ss_pred             HHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence            44333322 224444332    23344455566666666666667777776666665543   111222      12233


Q ss_pred             HHHHHHhcCCcchHHHHHhcCCCCCHh---hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCch
Q 036290          489 LIKSYVNFGQLDNSFEFSNGAERLDMA---SWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAY  565 (796)
Q Consensus       489 l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~  565 (796)
                      +..++-..++.+.|.+.+..+....+.   .|--+.......++..+|...+.+..... .-++..+..+-..+.....+
T Consensus       502 larl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~  580 (1018)
T KOG2002|consen  502 LARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEW  580 (1018)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhh
Confidence            455555666777777777776652222   22222222223366777777777765432 33333333344455566666


Q ss_pred             HHHHHHHHHHHHh-CCCCchhHHHHHHHHHHh------------cCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcC
Q 036290          566 QRTKSIHPFVIKL-GFNTEVYVASAVIDAYAK------------CGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHG  630 (796)
Q Consensus       566 ~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g  630 (796)
                      ..|.+-|....+. ...+|..+.-+|.+.|..            .+..+.|++.|.+.+..  .|...-|-+.-.++..|
T Consensus       581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg  660 (1018)
T KOG2002|consen  581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKG  660 (1018)
T ss_pred             cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhcc
Confidence            6666655554442 222566666666665542            24577889998777765  37777788888899999


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHH
Q 036290          631 LVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVI  710 (796)
Q Consensus       631 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~  710 (796)
                      ++.+|..+|.+.++... -...+|..+.++|...|+|..|+++|+...+.+.-.-+......|.+++.+.|++.+|.+.+
T Consensus       661 ~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~l  739 (1018)
T KOG2002|consen  661 RFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEAL  739 (1018)
T ss_pred             CchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            99999999999999654 24557888999999999999999999999988776666899999999999999999999988


Q ss_pred             HhC-CCCCC
Q 036290          711 EIM-PFQPS  718 (796)
Q Consensus       711 ~~~-~~~p~  718 (796)
                      ... ...|.
T Consensus       740 l~a~~~~p~  748 (1018)
T KOG2002|consen  740 LKARHLAPS  748 (1018)
T ss_pred             HHHHHhCCc
Confidence            776 34443

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.82  E-value=9.8e-16  Score=146.72  Aligned_cols=330  Identities=12%  Similarity=0.091  Sum_probs=244.2

Q ss_pred             cchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhcc--CChhH-HHHHHHHHHHhcCCCChhHhhHH
Q 036290          110 LVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSM--GASEF-GYSIHCFALKIRIEKNPFVGCSV  186 (796)
Q Consensus       110 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~--~~~~~-a~~~~~~~~~~g~~~~~~~~~~l  186 (796)
                      +.+-|.|+.- ...|...++--+|+.|+..|+..++..-..|++.-+-.  .++.. -++.|-.|.+.|-.. ..+|   
T Consensus       116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S-~~sW---  190 (625)
T KOG4422|consen  116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS-TSSW---  190 (625)
T ss_pred             hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc-cccc---
Confidence            3456666654 55788899999999999999888887766666544432  22222 234444444444322 2222   


Q ss_pred             HHHHHccCChhHHHHHhhccCCCCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHHH
Q 036290          187 LNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGR  266 (796)
Q Consensus       187 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~  266 (796)
                           +.|++.+   ++-+.......+|..||.++|+--..+.|.+++++-.....+.+..+||.+|.+.+-..    .+
T Consensus       191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K  258 (625)
T KOG4422|consen  191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GK  258 (625)
T ss_pred             -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cH
Confidence                 3354433   44444445677999999999999999999999999999989999999999998865433    38


Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCC
Q 036290          267 QIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPN  346 (796)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~  346 (796)
                      ++..+|....+.||..|+|+++....+.|+++.|.+                           .|++++.+|++-|+.|.
T Consensus       259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~---------------------------aalqil~EmKeiGVePs  311 (625)
T KOG4422|consen  259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARK---------------------------AALQILGEMKEIGVEPS  311 (625)
T ss_pred             HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCcc
Confidence            899999999999999999999999888888877654                           35778889999999999


Q ss_pred             cchHHHHHHHhcccCChHH-HHHHHHHHHH----hCCC---C-chhHHHHHHHHHHhcCChHHHHHHHHhCCC-------
Q 036290          347 HVTFSILLRQCGKLLDLDL-GLQLQCLALH----CGFL---D-EENVTSSLIYMFCRCGAVEMAHSVFDNVSY-------  410 (796)
Q Consensus       347 ~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~----~g~~---~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-------  410 (796)
                      ..+|..+|..+++.++..+ +..++.+++.    ..+.   | |...+..-+..|.+..+.+-|.++-.-...       
T Consensus       312 LsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~i  391 (625)
T KOG4422|consen  312 LSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFI  391 (625)
T ss_pred             hhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhc
Confidence            9999999998888887744 4444444443    1222   2 444556777777788888888777654432       


Q ss_pred             -CC---hhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCc
Q 036290          411 -KN---ITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCG  483 (796)
Q Consensus       411 -~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  483 (796)
                       ++   ..-|..+....|+....+.-+.+|+.|.-+-+-|+..+...++++..-.+.++...+++.+++..|.....
T Consensus       392 g~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~  468 (625)
T KOG4422|consen  392 GPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRS  468 (625)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhH
Confidence             11   22466677788888889999999999998888899999999999999999999999999999888854433

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.81  E-value=2.1e-17  Score=175.33  Aligned_cols=291  Identities=15%  Similarity=0.131  Sum_probs=202.6

Q ss_pred             HHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcch
Q 036290          422 GYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDN  501 (796)
Q Consensus       422 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  501 (796)
                      .+...|++++|+..|.++.+.+ +.+..++..+...+...|+++.|..+++.+.+.+..++..                 
T Consensus        44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~-----------------  105 (389)
T PRK11788         44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ-----------------  105 (389)
T ss_pred             HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH-----------------
Confidence            4455677777777777776642 1223345555555555566666666555554432111000                 


Q ss_pred             HHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCC
Q 036290          502 SFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFN  581 (796)
Q Consensus       502 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  581 (796)
                                 ....+..+...|.+.|++++|..+|+++.+.. +++..++..+...+...|++++|.+.++.+.+.+..
T Consensus       106 -----------~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  173 (389)
T PRK11788        106 -----------RLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD  173 (389)
T ss_pred             -----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC
Confidence                       01234555666666666666666666665542 344556666666666777777777777666665433


Q ss_pred             Cc----hhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHH
Q 036290          582 TE----VYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPS--QAT  653 (796)
Q Consensus       582 ~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t  653 (796)
                      +.    ...+..+...+.+.|++++|.+.+++.+..  .+...+..+...+.+.|++++|.++++++.+.  .|+  ..+
T Consensus       174 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~  251 (389)
T PRK11788        174 SLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DPEYLSEV  251 (389)
T ss_pred             cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--ChhhHHHH
Confidence            22    123455677778888999998888666543  25567788889999999999999999999884  453  456


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHh-
Q 036290          654 FVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVYRSLLSGCRI-  731 (796)
Q Consensus       654 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~-  731 (796)
                      +..+..+|...|++++|...++++.   ...|+...+..++..+.+.|++++|.++++++ ...|+..+++.++..+.. 
T Consensus       252 ~~~l~~~~~~~g~~~~A~~~l~~~~---~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~  328 (389)
T PRK11788        252 LPKLMECYQALGDEAEGLEFLRRAL---EEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAE  328 (389)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhc
Confidence            7888999999999999999999998   34688777788999999999999999999877 667999899988887664 


Q ss_pred             --cCChHHHHHHHHHHHc
Q 036290          732 --HGNKELGEWASEKLLL  747 (796)
Q Consensus       732 --~g~~~~A~~~~~~~~~  747 (796)
                        .|+..++..+++++++
T Consensus       329 ~~~g~~~~a~~~~~~~~~  346 (389)
T PRK11788        329 AEEGRAKESLLLLRDLVG  346 (389)
T ss_pred             cCCccchhHHHHHHHHHH
Confidence              5688888888887775

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.81  E-value=1.4e-15  Score=158.51  Aligned_cols=661  Identities=13%  Similarity=0.028  Sum_probs=368.5

Q ss_pred             CCCCCChhhHHHHHhhhhccCChhhHHHHHHHHHHhCCCCCchhhHHHHHHHHccCChhHHHHHhcccCCCCcchHHHHH
Q 036290           38 SFLRKDPIFLAKSLSLSENLKSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIV  117 (796)
Q Consensus        38 ~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll  117 (796)
                      +|.-|+.+||.+++..||..|+.+.|. +|..|.-..+..+..+++.++.+....++.+.+.       +|...+|+.|+
T Consensus        19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll   90 (1088)
T KOG4318|consen   19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLL   90 (1088)
T ss_pred             hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHH
Confidence            688999999999999999999998888 9999988888888899999999999999887775       78888999999


Q ss_pred             HHHHhcCCchH---HHHHHHHHHH----CCCCCCcccHHHHHHHHhccCChhH--------HHHHHHHHHHhc-CCCChh
Q 036290          118 SAAIQNGEFDM---GLKMYVDMKT----NGFMPNEFAVGSVMKVCVSMGASEF--------GYSIHCFALKIR-IEKNPF  181 (796)
Q Consensus       118 ~~~~~~~~~~~---a~~~~~~m~~----~~~~p~~~t~~~ll~~~~~~~~~~~--------a~~~~~~~~~~g-~~~~~~  181 (796)
                      .+|.++|+...   ..+.++....    .|+.--..-|-..+.+|.. -..+.        -+.+.+...+.+ ..|...
T Consensus        91 ~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~-~lpda~n~illlv~eglwaqllkll~~~Pvsa  169 (1088)
T KOG4318|consen   91 KAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPH-SLPDAENAILLLVLEGLWAQLLKLLAKVPVSA  169 (1088)
T ss_pred             HHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcc-cchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence            99999998754   2232222222    2332222222222222211 11111        112222233333 112111


Q ss_pred             HhhHHHHHHHcc-----CChhHHHHHhhccCC-CCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHh
Q 036290          182 VGCSVLNFYAKL-----GDVAAAERVFYSISS-DDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQG  255 (796)
Q Consensus       182 ~~~~li~~~~~~-----g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  255 (796)
                      -++...- +.+.     ..+++-........+ ++..+|..++.+-.-+|+.+.|..++.+|++.|++.+..-|..+|-+
T Consensus       170 ~~~p~~v-fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g  248 (1088)
T KOG4318|consen  170 WNAPFQV-FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG  248 (1088)
T ss_pred             ccchHHH-HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc
Confidence            1111111 1221     223333333333333 78889999999999999999999999999999999999888888766


Q ss_pred             hccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHHHHH-
Q 036290          256 CSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASL-  334 (796)
Q Consensus       256 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l-  334 (796)
                         .++...+..++.-|...|+.|+..|+...+-.+..+|....+...    . +....+++-+..-+-.|  ..|.+. 
T Consensus       249 ---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~----s-q~~hg~tAavrsaa~rg--~~a~k~l  318 (1088)
T KOG4318|consen  249 ---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG----S-QLAHGFTAAVRSAACRG--LLANKRL  318 (1088)
T ss_pred             ---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc----c-chhhhhhHHHHHHHhcc--cHhHHHH
Confidence               788888899999999999999999998888777776653222221    1 22222222222222223  222222 


Q ss_pred             -----------HHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhC--CCC-chhHHHHHHHHHHhcCChHH
Q 036290          335 -----------FHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCG--FLD-EENVTSSLIYMFCRCGAVEM  400 (796)
Q Consensus       335 -----------~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~-~~~~~~~ll~~~~~~g~~~~  400 (796)
                                 +.+..-.|+.-....|.... -....|.-+...++-..+..--  ..+ ++..|..++.-|        
T Consensus       319 ~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqy--------  389 (1088)
T KOG4318|consen  319 RQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQY--------  389 (1088)
T ss_pred             HHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHH--------
Confidence                       22222223322222222222 2223555566666655554321  111 222333333333        


Q ss_pred             HHHHHHhCCCCChh-hHH--HH------------HHHHHhcCCchHHHHHHHHHHhc----CC-------cccHHHHHHH
Q 036290          401 AHSVFDNVSYKNIT-TWN--EL------------LSGYCFNCCDADVLKTFCNIWES----GV-------EVNGCTFFYV  454 (796)
Q Consensus       401 A~~~~~~~~~~~~~-~~~--~l------------i~~~~~~g~~~~a~~~~~~m~~~----g~-------~p~~~t~~~l  454 (796)
                          |.+...+... .++  ..            +.-++..-+...+++-+..+...    ..       .|-...-+.+
T Consensus       390 ----Frr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql  465 (1088)
T KOG4318|consen  390 ----FRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQL  465 (1088)
T ss_pred             ----HHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHH
Confidence                3333222111 111  00            00011111112222222111111    01       1122334556


Q ss_pred             HHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCH------hhHHHHHHHHHHcC
Q 036290          455 VETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDM------ASWGAMMSALVHQG  528 (796)
Q Consensus       455 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~~  528 (796)
                      +..|++..+...+...-+.....-++   ..|..||+.+....+.+.|..+.++...++.      .-+..+.+.+.+.+
T Consensus       466 ~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~  542 (1088)
T KOG4318|consen  466 HLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLA  542 (1088)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhH
Confidence            66777766666666444444333322   6789999999999999999999998887544      45778888999999


Q ss_pred             ChhHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 036290          529 HNHEAVTIFHSLVEAGEK-P-DEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMA  606 (796)
Q Consensus       529 ~~~~A~~~~~~m~~~g~~-p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  606 (796)
                      ...++..++.++.+.-.. | ...++-.+++.....|+.+...++++.+...|+.-+    ..++....+.++...|.++
T Consensus       543 ~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea  618 (1088)
T KOG4318|consen  543 ILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEA  618 (1088)
T ss_pred             HHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhc
Confidence            999999999999764322 2 245677788888899999999999999888877642    3344455566777777666


Q ss_pred             HhccCCC--C---ChhHHHHHHH------------------HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036290          607 FDQSFNS--N---DVIVYNTLIM------------------AYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSH  663 (796)
Q Consensus       607 ~~~~~~~--~---~~~~~~~li~------------------~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~  663 (796)
                      ++..-..  +   +...+..++.                  .|.+.|+...|.++.+.   .|+.    +-+.- ..|..
T Consensus       619 ~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~et---pG~r----~r~~R-Dr~~d  690 (1088)
T KOG4318|consen  619 PEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITET---PGVR----CRNGR-DRDTD  690 (1088)
T ss_pred             chHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhcccc---Cccc----ccCCC-ccccc
Confidence            6221111  1   1122222211                  12333333333222211   0100    00000 11112


Q ss_pred             cCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHH
Q 036290          664 KGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHG---NKELGEW  740 (796)
Q Consensus       664 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~  740 (796)
                      .|...--....+.+...       .....|+..|.+.|+++.|..++.++++.|+..+...|+..+.+..   |+.++..
T Consensus       691 e~e~~~lEll~elt~~l-------g~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~  763 (1088)
T KOG4318|consen  691 EGEIVPLELLLELTHEL-------GKNDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQA  763 (1088)
T ss_pred             cCccccHHHHHHHHhHh-------HHHHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHH
Confidence            22222222222222211       1122366677777777777777777776677666666666655442   4555666


Q ss_pred             HHHHHHccCCCCC
Q 036290          741 ASEKLLLLLPKND  753 (796)
Q Consensus       741 ~~~~~~~~~p~~~  753 (796)
                      ..+++-+..|..+
T Consensus       764 e~ekas~~~~~f~  776 (1088)
T KOG4318|consen  764 ETEKASELRTLFP  776 (1088)
T ss_pred             HHHHHHhcccccc
Confidence            6666655554433

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.81  E-value=1.3e-16  Score=177.13  Aligned_cols=331  Identities=11%  Similarity=0.024  Sum_probs=247.9

Q ss_pred             hHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHH
Q 036290          415 TWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYV  494 (796)
Q Consensus       415 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  494 (796)
                      ....++..+.+.|++++|+.+++........+.. ....+..++...|+++.|...++.+.+.. |.+...+..+...+.
T Consensus        44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~  121 (656)
T PRK15174         44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL  121 (656)
T ss_pred             CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence            3445667778888888888888888776443333 33344455566888888888888888775 666777888888888


Q ss_pred             hcCCcchHHHHHhcCCC---CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHH
Q 036290          495 NFGQLDNSFEFSNGAER---LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSI  571 (796)
Q Consensus       495 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~  571 (796)
                      ..|++++|...+++...   .+...+..+...+...|++++|...++.+...... +...+.. +..+...|++++|...
T Consensus       122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~-~~~l~~~g~~~eA~~~  199 (656)
T PRK15174        122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIAT-CLSFLNKSRLPEDHDL  199 (656)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHH-HHHHHHcCCHHHHHHH
Confidence            88999888888887765   34567778888888889999999888887655322 2222322 3346778889999888


Q ss_pred             HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHH----HHHHHHHHHHC
Q 036290          572 HPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSE----AMEIFDKMKLA  645 (796)
Q Consensus       572 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~  645 (796)
                      ++.+.+....++......+..++...|++++|...+++.+..  .+...+..+...+...|++++    |...+++..+ 
T Consensus       200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~-  278 (656)
T PRK15174        200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ-  278 (656)
T ss_pred             HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh-
Confidence            888777654444455556677788889999998888766654  366777888888888898885    7888888888 


Q ss_pred             CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHH
Q 036290          646 NLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVY  722 (796)
Q Consensus       646 g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~  722 (796)
                       ..| +...+..+...+...|++++|...+++..   ...|+ ...+..+..++.+.|++++|.+.++++ ...|+...+
T Consensus       279 -l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al---~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~  354 (656)
T PRK15174        279 -FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSL---ATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKW  354 (656)
T ss_pred             -hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHH
Confidence             566 55677888888888999999999998887   34666 566777888888999999999988887 456665443


Q ss_pred             -HHHHHHHHhcCChHHHHHHHHHHHccCCCCCc
Q 036290          723 -RSLLSGCRIHGNKELGEWASEKLLLLLPKNDA  754 (796)
Q Consensus       723 -~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  754 (796)
                       ..+..++...|+.++|...++++++.+|++..
T Consensus       355 ~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~  387 (656)
T PRK15174        355 NRYAAAALLQAGKTSEAESVFEHYIQARASHLP  387 (656)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch
Confidence             34566688889999999999999999888653

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.80  E-value=1.8e-15  Score=172.01  Aligned_cols=396  Identities=8%  Similarity=-0.037  Sum_probs=266.8

Q ss_pred             HHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCC---CChhhHHHHHHHHHhcCCch
Q 036290          354 LRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSY---KNITTWNELLSGYCFNCCDA  430 (796)
Q Consensus       354 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~  430 (796)
                      +......|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++...   .+...+..+...+...|+++
T Consensus        22 ~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~  100 (765)
T PRK10049         22 LQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD  100 (765)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence            333444555555555555554411 33344456666666666666666666666432   23445556666666777777


Q ss_pred             HHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCC
Q 036290          431 DVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAE  510 (796)
Q Consensus       431 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  510 (796)
                      +|+..+++..+.  .|+...+..+..++...|+.+.|...++.+.+.. |.+...+..+...+...+..+.|.+.++...
T Consensus       101 eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~  177 (765)
T PRK10049        101 EALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDAN  177 (765)
T ss_pred             HHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence            777777776654  3322225555666666777777777777777665 4455566667777777788888888877666


Q ss_pred             C-CCH------hhHHHHHHHHH-----HcCCh---hHHHHHHHHHHHc-CCCCCHH-HHH----HHHHHHhccCchHHHH
Q 036290          511 R-LDM------ASWGAMMSALV-----HQGHN---HEAVTIFHSLVEA-GEKPDEY-ILG----TILNSCAAIGAYQRTK  569 (796)
Q Consensus       511 ~-~~~------~~~~~li~~~~-----~~~~~---~~A~~~~~~m~~~-g~~p~~~-t~~----~ll~~~~~~~~~~~a~  569 (796)
                      . |+.      ......+....     ..+++   ++|++.++.+.+. ...|+.. .+.    ..+.++...|+.+.|.
T Consensus       178 ~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~  257 (765)
T PRK10049        178 LTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVI  257 (765)
T ss_pred             CCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence            5 111      01112222221     12233   6788888888754 2233322 111    1134456778999999


Q ss_pred             HHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC--C----hhHHHHHHHHHHhcCChHHHHHHHHHH
Q 036290          570 SIHPFVIKLGFN-TEVYVASAVIDAYAKCGDIKGARMAFDQSFNSN--D----VIVYNTLIMAYAHHGLVSEAMEIFDKM  642 (796)
Q Consensus       570 ~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~----~~~~~~li~~~~~~g~~~~A~~~~~~m  642 (796)
                      ..|+.+.+.+.. |+. ....+..+|...|++++|+..|++.+..+  +    ......+..++...|++++|.++++++
T Consensus       258 ~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~  336 (765)
T PRK10049        258 SEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHT  336 (765)
T ss_pred             HHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            999999887643 332 22335778999999999999997665542  1    234666777889999999999999999


Q ss_pred             HHCC-----------CCCCH---HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHH
Q 036290          643 KLAN-----------LQPSQ---ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAK  707 (796)
Q Consensus       643 ~~~g-----------~~p~~---~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~  707 (796)
                      .+..           -.|+.   ..+..+...+...|++++|++.++++..   ..|+ ...+..++.++...|++++|+
T Consensus       337 ~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~---~~P~n~~l~~~lA~l~~~~g~~~~A~  413 (765)
T PRK10049        337 INNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY---NAPGNQGLRIDYASVLQARGWPRAAE  413 (765)
T ss_pred             hhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence            8742           11231   2345566788899999999999999983   4565 788889999999999999999


Q ss_pred             HHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceE
Q 036290          708 HVIEIM-PFQPS-PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHV  757 (796)
Q Consensus       708 ~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  757 (796)
                      +.+++. ...|+ ...+..++..+...|++++|+++++++++..|+++.+..
T Consensus       414 ~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~  465 (765)
T PRK10049        414 NELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR  465 (765)
T ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            999998 56676 456677777889999999999999999999999997643

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.80  E-value=2.1e-16  Score=164.53  Aligned_cols=616  Identities=11%  Similarity=0.061  Sum_probs=374.2

Q ss_pred             HHHHHHHHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhcCCCChhHhhHHHHHHHccCChhHHHHHhhccCCC
Q 036290          130 LKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSD  209 (796)
Q Consensus       130 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  209 (796)
                      ..++-.|...|+.||.+||..++..||..|+.+.|- +|..|.-...+.+..+++.++....+.|+.+.+.       +|
T Consensus        10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep   81 (1088)
T KOG4318|consen   10 TNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EP   81 (1088)
T ss_pred             chHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CC
Confidence            467888899999999999999999999999999999 9999998888888999999999999999988776       67


Q ss_pred             CceeHHHHHHHHHhCCCchHHHHHHHH-HH-------HCCCCCCHhhHHHHHHhhccC-CCchH------HHHHHHHHHH
Q 036290          210 DVGCWNAMIGGYAHCGYGFEALNVVSS-ML-------FEGITMDKYTFINALQGCSLV-ADFDI------GRQIHGLIIR  274 (796)
Q Consensus       210 ~~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~p~~~~~~~ll~~~~~~-~~~~~------a~~~~~~~~~  274 (796)
                      ...+|+.|..+|.+.|+... ++..++ |.       ..|+.....-|-..++.|-.. .+...      -+.+++...+
T Consensus        82 ~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk  160 (1088)
T KOG4318|consen   82 LADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK  160 (1088)
T ss_pred             chhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence            88899999999999999765 322222 22       234333333332233322211 11111      1122333333


Q ss_pred             hc-CCC-ChHH--HHHHHHhhh-cCCCHHHHHHHHhhcCC-CCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcc
Q 036290          275 SE-VEC-SISI--VNALIDMYI-KSSGMDYAFKVFERMAD-KDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHV  348 (796)
Q Consensus       275 ~~-~~~-~~~~--~~~li~~~~-~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~  348 (796)
                      .+ ..| ....  ....+.-.. -...+++-..+.....+ ++..+|.+++..-..+|+.+.|..++.+|++.|+..+..
T Consensus       161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H  240 (1088)
T KOG4318|consen  161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH  240 (1088)
T ss_pred             HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence            33 111 1100  000122222 22344555555555554 799999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcC-
Q 036290          349 TFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNC-  427 (796)
Q Consensus       349 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-  427 (796)
                      -|..+|-+   .++...+..++..|.+.|+.|+..|+..-+..+..+|....+...    . +....+++-+.+-+-.| 
T Consensus       241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~----s-q~~hg~tAavrsaa~rg~  312 (1088)
T KOG4318|consen  241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG----S-QLAHGFTAAVRSAACRGL  312 (1088)
T ss_pred             cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc----c-chhhhhhHHHHHHHhccc
Confidence            88888866   888888999999999999999999998887777775553322221    1 21112222222222222 


Q ss_pred             ---------CchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCC---CCchhHhHHHHHHHh
Q 036290          428 ---------CDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFS---SCGYICSSLIKSYVN  495 (796)
Q Consensus       428 ---------~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~  495 (796)
                               ...-....+++..-.|+......|..... ....|.-+..+++...+..--..   .++..|..++.-|  
T Consensus       313 ~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqy--  389 (1088)
T KOG4318|consen  313 LANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQY--  389 (1088)
T ss_pred             HhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHH--
Confidence                     11112222222222343333333332222 22355556666666555432211   1222333333333  


Q ss_pred             cCCcchHHHHHhcCCCCCHh-hHH--------------HHHHHHHHcCChhHHHHHHHHHHH----cCCC-------CCH
Q 036290          496 FGQLDNSFEFSNGAERLDMA-SWG--------------AMMSALVHQGHNHEAVTIFHSLVE----AGEK-------PDE  549 (796)
Q Consensus       496 ~g~~~~A~~~~~~~~~~~~~-~~~--------------~li~~~~~~~~~~~A~~~~~~m~~----~g~~-------p~~  549 (796)
                                |.+...+... .|+              ..+.-+...-+...+++-+..+..    +...       |-.
T Consensus       390 ----------Frr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~ir  459 (1088)
T KOG4318|consen  390 ----------FRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIR  459 (1088)
T ss_pred             ----------HHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHH
Confidence                      3333322111 111              011111111122222222222211    0111       112


Q ss_pred             HHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC------ChhHHHHHH
Q 036290          550 YILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSN------DVIVYNTLI  623 (796)
Q Consensus       550 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~li  623 (796)
                      ..-+.++..|++.-+..+++..-+.....-+.   ..|..||+.++...+.+.|..+. +.+..+      |..-+..+.
T Consensus       460 di~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~-~e~d~~d~s~~Ld~~~m~~l~  535 (1088)
T KOG4318|consen  460 DIANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFV-DEIDTRDESIHLDLPLMTSLQ  535 (1088)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhch-hhhcccchhhhcccHhHHHHH
Confidence            23445666677766666666555544443332   67899999999999999999999 444443      556788899


Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcC
Q 036290          624 MAYAHHGLVSEAMEIFDKMKLANL-QP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNG  701 (796)
Q Consensus       624 ~~~~~~g~~~~A~~~~~~m~~~g~-~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  701 (796)
                      +.+.+.+....+.++++++.+.-. .| ...++-.++......|+.+.-.++++-+..- |+.-+    ..++....+.+
T Consensus       536 dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvsl-gl~et----gPl~~vhLrkd  610 (1088)
T KOG4318|consen  536 DLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSL-GLSET----GPLWMVHLRKD  610 (1088)
T ss_pred             HHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHh-hhhhc----ccceEEEeecc
Confidence            999999999999999999987322 23 2445666777888889998888888777733 55542    44666778899


Q ss_pred             ChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc--CChHHHHHHHHHHHccCCCCCcceEEecC----hhhHHhCCCccC
Q 036290          702 YLEDAKHVIEIM--PFQPSPTVYRSLLSGCRIH--GNKELGEWASEKLLLLLPKNDAAHVLLSK----RKRQREGNLLDH  773 (796)
Q Consensus       702 ~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~p~~~~~~~~l~~----~~~~~~~~~~~~  773 (796)
                      +...|.+..+.-  ..+|.+.....+.....+.  .+++.+..+......        |+-+.+    ++.....|+...
T Consensus       611 d~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~--------f~k~g~~~~a~di~etpG~r~r  682 (1088)
T KOG4318|consen  611 DQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQK--------FEKLGSCVDAGDITETPGVRCR  682 (1088)
T ss_pred             chhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHH--------HHhcccccchhhccccCccccc
Confidence            999999888766  4667766666666555432  233333333222211        222222    777888999988


Q ss_pred             CCccEEEeCCeeeeeeeee
Q 036290          774 EGVCNVNDGIKTVDLKLEL  792 (796)
Q Consensus       774 ~~~s~~~~~~~~~~~~~~~  792 (796)
                      +++..-...|.+.|.+.+-
T Consensus       683 ~~RDr~~de~e~~~lEll~  701 (1088)
T KOG4318|consen  683 NGRDRDTDEGEIVPLELLL  701 (1088)
T ss_pred             CCCccccccCccccHHHHH
Confidence            9887777777777766543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.79  E-value=4.9e-17  Score=172.57  Aligned_cols=298  Identities=13%  Similarity=0.086  Sum_probs=138.1

Q ss_pred             cccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCC-C------hhhHHHHHHHHHhcCCch
Q 036290          358 GKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYK-N------ITTWNELLSGYCFNCCDA  430 (796)
Q Consensus       358 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~~g~~~  430 (796)
                      ...|+++.|...|..+.+.+ +.+..++..+...+.+.|++++|..+++.+... +      ...+..+...|.+.|+++
T Consensus        46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~  124 (389)
T PRK11788         46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD  124 (389)
T ss_pred             HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence            34455555555555555542 223334455555555555555555555544321 1      123444444455555555


Q ss_pred             HHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCC
Q 036290          431 DVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAE  510 (796)
Q Consensus       431 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  510 (796)
                      +|..+|+++.+. -+++..++..+...+...|++++|.+.++.+.+.+..+....                         
T Consensus       125 ~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------------------------  178 (389)
T PRK11788        125 RAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE-------------------------  178 (389)
T ss_pred             HHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-------------------------
Confidence            555555554432 112233344444444444444444444444433321110000                         


Q ss_pred             CCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHH
Q 036290          511 RLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAV  590 (796)
Q Consensus       511 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  590 (796)
                        ....|..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++.+.+.+.......+..+
T Consensus       179 --~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l  255 (389)
T PRK11788        179 --IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKL  255 (389)
T ss_pred             --HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHH
Confidence              00122334444455555555555555554432 122334444445555555555555555555544332223344455


Q ss_pred             HHHHHhcCCHHHHHHHHhccCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---cCC
Q 036290          591 IDAYAKCGDIKGARMAFDQSFNS-NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSH---KGL  666 (796)
Q Consensus       591 i~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~---~g~  666 (796)
                      +.+|...|++++|.+.++..... |+...+..++..+.+.|++++|..+++++.+  ..|+..++..++..+..   .|+
T Consensus       256 ~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~  333 (389)
T PRK11788        256 MECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGR  333 (389)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCcc
Confidence            55555555555555555333321 3334445555555556666666666655555  34555555555544432   335


Q ss_pred             HHHHHHHHHHhHhhcCCCCCch
Q 036290          667 VDKGCLLFKSMDSQYGMQPSPD  688 (796)
Q Consensus       667 ~~~A~~~~~~~~~~~~~~p~~~  688 (796)
                      .+++..+++++.++ ++.|++.
T Consensus       334 ~~~a~~~~~~~~~~-~~~~~p~  354 (389)
T PRK11788        334 AKESLLLLRDLVGE-QLKRKPR  354 (389)
T ss_pred             chhHHHHHHHHHHH-HHhCCCC
Confidence            55566666655544 4455443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.77  E-value=8.5e-15  Score=163.67  Aligned_cols=420  Identities=11%  Similarity=-0.014  Sum_probs=289.4

Q ss_pred             hHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 036290          314 SWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFC  393 (796)
Q Consensus       314 ~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~  393 (796)
                      .+......+.+.|++++|+..|++...  +.|+...|..+-.++.+.|++++|.+.+....+.. +.+...+..+..+|.
T Consensus       129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~  205 (615)
T TIGR00990       129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD  205 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            455667788889999999999998875  46777788888888888999999999988888763 335567777888888


Q ss_pred             hcCChHHHHHHHHhCCCC---ChhhHHHHHHHHHhcCCchHHHHHHHHHHhcC--CcccHHHHHHHHHHhcccCcHHHHH
Q 036290          394 RCGAVEMAHSVFDNVSYK---NITTWNELLSGYCFNCCDADVLKTFCNIWESG--VEVNGCTFFYVVETCCRSENQQMVG  468 (796)
Q Consensus       394 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~  468 (796)
                      ..|++++|...|......   +......++..+..    ..+...........  ..|..............    ....
T Consensus       206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~  277 (615)
T TIGR00990       206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRP----KPRP  277 (615)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccC----Ccch
Confidence            999999988877554321   11111122221111    12222222222221  11222222122211110    0000


Q ss_pred             HHHHHHHHhCCCCC-chhHhHHHHH---HHhcCCcchHHHHHhcCCC------CCHhhHHHHHHHHHHcCChhHHHHHHH
Q 036290          469 QIHGAIIKTGFSSC-GYICSSLIKS---YVNFGQLDNSFEFSNGAER------LDMASWGAMMSALVHQGHNHEAVTIFH  538 (796)
Q Consensus       469 ~~~~~~~~~~~~~~-~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~  538 (796)
                      .-+....+  ..+. ...+..+...   ....+++++|.+.|+...+      .....|+.+...+...|++++|+..|+
T Consensus       278 ~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~  355 (615)
T TIGR00990       278 AGLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS  355 (615)
T ss_pred             hhhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            10111000  0111 0111111111   1234678899998887654      234567788888889999999999999


Q ss_pred             HHHHcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C-C
Q 036290          539 SLVEAGEKPD-EYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N-D  615 (796)
Q Consensus       539 ~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~  615 (796)
                      +..+.  .|+ ...|..+...+...|+++.|...++...+.... +...+..+...+...|++++|...|++.+.. | +
T Consensus       356 kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~  432 (615)
T TIGR00990       356 KSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF  432 (615)
T ss_pred             HHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC
Confidence            98765  454 557778888889999999999999998887543 5778888999999999999999999777664 3 6


Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCc-hH----
Q 036290          616 VIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSP-DC----  689 (796)
Q Consensus       616 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~----  689 (796)
                      ...+..+...+.+.|++++|+..+++..+  ..| +...++.+...+...|++++|+..|++..   .+.|+. ..    
T Consensus       433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al---~l~p~~~~~~~~~  507 (615)
T TIGR00990       433 IFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAI---ELEKETKPMYMNV  507 (615)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH---hcCCccccccccH
Confidence            77788888999999999999999999988  556 56778888899999999999999999987   344431 11    


Q ss_pred             ---HHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc
Q 036290          690 ---YGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP-TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDA  754 (796)
Q Consensus       690 ---~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  754 (796)
                         ++.....+...|++++|.+++++. ...|+. ..+..+...+...|++++|...+++++++.+....
T Consensus       508 ~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e  577 (615)
T TIGR00990       508 LPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE  577 (615)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence               122222344469999999999986 556654 56888999999999999999999999998875443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.76  E-value=3e-14  Score=158.41  Aligned_cols=424  Identities=8%  Similarity=0.050  Sum_probs=254.7

Q ss_pred             hhcCCCHHHHHHHHhhcCCCCcc---hHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHH---HHHhcccCChH
Q 036290          291 YIKSSGMDYAFKVFERMADKDVI---SWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSIL---LRQCGKLLDLD  364 (796)
Q Consensus       291 ~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~  364 (796)
                      ..+.|+++.|+..|++..+.+..   ....++..+...|+.++|+..+++..    .|+...+..+   ...+...|+++
T Consensus        44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd  119 (822)
T PRK14574         44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWD  119 (822)
T ss_pred             HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHH
Confidence            34566666666666665542211   12255555556666666666666654    3322222222   22344445555


Q ss_pred             HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCC
Q 036290          365 LGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGV  444 (796)
Q Consensus       365 ~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  444 (796)
                      .|.++++.+.+.. +.+...+..++..+...++.++|++.++++...                                 
T Consensus       120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---------------------------------  165 (822)
T PRK14574        120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER---------------------------------  165 (822)
T ss_pred             HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---------------------------------
Confidence            5555555555442 222333444455555555555555555555432                                 


Q ss_pred             cccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCC---CCHhhH----
Q 036290          445 EVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAER---LDMASW----  517 (796)
Q Consensus       445 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~----  517 (796)
                      .|+...+..++..+...++...|.+.++++.+.. |.+...+..++....+.|-...|.++...-+.   +...-+    
T Consensus       166 dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~  244 (822)
T PRK14574        166 DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERD  244 (822)
T ss_pred             CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHH
Confidence            2332233222222222233323444444444443 34444555555555555555555555444332   000000    


Q ss_pred             --HHHHH-HH----HHcCC---hhHHHHHHHHHHHc-CCCCCH-HH----HHHHHHHHhccCchHHHHHHHHHHHHhCCC
Q 036290          518 --GAMMS-AL----VHQGH---NHEAVTIFHSLVEA-GEKPDE-YI----LGTILNSCAAIGAYQRTKSIHPFVIKLGFN  581 (796)
Q Consensus       518 --~~li~-~~----~~~~~---~~~A~~~~~~m~~~-g~~p~~-~t----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  581 (796)
                        ..+++ +.    ....+   .+.|+.-++.+... +-.|.. .-    ..--+-++...++...+.+.++.+...+.+
T Consensus       245 ~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~  324 (822)
T PRK14574        245 AAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYK  324 (822)
T ss_pred             HHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCC
Confidence              00010 00    01112   23455555555432 122322 12    223455777888999999999999988877


Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC--------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC------
Q 036290          582 TEVYVASAVIDAYAKCGDIKGARMAFDQSFNSN--------DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANL------  647 (796)
Q Consensus       582 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------  647 (796)
                      ....+-..+.++|...+++++|..++++.....        +......|.-++...+++++|..+++.+.+.-.      
T Consensus       325 ~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~  404 (822)
T PRK14574        325 MPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVY  404 (822)
T ss_pred             CCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEecc
Confidence            677788899999999999999999996554421        333357788899999999999999999987311      


Q ss_pred             -------CCCHHH-HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 036290          648 -------QPSQAT-FVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP  717 (796)
Q Consensus       648 -------~p~~~t-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p  717 (796)
                             .||-.. +..++..+...|++.+|++.++++.   ...|. ......+.+++...|++.+|.+.++.. ...|
T Consensus       405 ~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~---~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P  481 (822)
T PRK14574        405 GLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLS---STAPANQNLRIALASIYLARDLPRKAEQELKAVESLAP  481 (822)
T ss_pred             CCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Confidence                   123333 3345567888999999999999997   34554 888889999999999999999999776 4566


Q ss_pred             CH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcce
Q 036290          718 SP-TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAH  756 (796)
Q Consensus       718 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  756 (796)
                      +. .+....+.++...|++.+|..+.+.+++..|+++...
T Consensus       482 ~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~  521 (822)
T PRK14574        482 RSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ  521 (822)
T ss_pred             ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence            54 5667788888899999999999999999999998654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.75  E-value=1.8e-14  Score=161.16  Aligned_cols=417  Identities=11%  Similarity=0.020  Sum_probs=297.5

Q ss_pred             HHHHHHHhhhcCCCHHHHHHHHhhcCC--CCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCC-cchHHHHHHHhcc
Q 036290          283 IVNALIDMYIKSSGMDYAFKVFERMAD--KDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPN-HVTFSILLRQCGK  359 (796)
Q Consensus       283 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~-~~t~~~ll~~~~~  359 (796)
                      .+...-..+.+.|+++.|+..|++...  |+...|..+..+|.+.|++++|++.++...+.  .|+ ...+..+-.++..
T Consensus       129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~  206 (615)
T TIGR00990       129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDG  206 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence            355667788899999999999998764  67778889999999999999999999998865  454 4577778889999


Q ss_pred             cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHH
Q 036290          360 LLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNI  439 (796)
Q Consensus       360 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  439 (796)
                      .|++++|..-+......+-..+.. ...++..+........+...++.-+ .+...+..+. .+...........-+.+-
T Consensus       207 lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  283 (615)
T TIGR00990       207 LGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVG-NYLQSFRPKPRPAGLEDS  283 (615)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHH-HHHHHccCCcchhhhhcc
Confidence            999999999887665543222222 2222222222222334444443322 2222333322 232222222222212111


Q ss_pred             HhcCCcccH-HHHHHHH---HHhcccCcHHHHHHHHHHHHHhC-C-CCCchhHhHHHHHHHhcCCcchHHHHHhcCCC--
Q 036290          440 WESGVEVNG-CTFFYVV---ETCCRSENQQMVGQIHGAIIKTG-F-SSCGYICSSLIKSYVNFGQLDNSFEFSNGAER--  511 (796)
Q Consensus       440 ~~~g~~p~~-~t~~~ll---~~~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--  511 (796)
                      .+  ..|+. ..+..+.   .-....+++++|.+.++...+.+ . +.....+..+...+...|++++|...++...+  
T Consensus       284 ~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~  361 (615)
T TIGR00990       284 NE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD  361 (615)
T ss_pred             cc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            11  11111 0011110   11133468899999999998875 2 33456788888999999999999999998765  


Q ss_pred             C-CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHH
Q 036290          512 L-DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAV  590 (796)
Q Consensus       512 ~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  590 (796)
                      | ....|..+...+...|++++|...|++..+.. +.+...+..+...+...|+++.|...++...+.... +...+..+
T Consensus       362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~l  439 (615)
T TIGR00990       362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQL  439 (615)
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHH
Confidence            3 35578888889999999999999999987763 445678888888999999999999999999887654 56677788


Q ss_pred             HHHHHhcCCHHHHHHHHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HH-------HHHHHHH
Q 036290          591 IDAYAKCGDIKGARMAFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQ-AT-------FVSVMSA  660 (796)
Q Consensus       591 i~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t-------~~~ll~~  660 (796)
                      ..++.+.|++++|...+++.+.. | +...|+.+...+...|++++|.+.|++..+  +.|+. .+       ++.....
T Consensus       440 a~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~p~~~~~~~~~~~l~~~a~~~  517 (615)
T TIGR00990       440 GVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE--LEKETKPMYMNVLPLINKALAL  517 (615)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCccccccccHHHHHHHHHHH
Confidence            99999999999999999776654 3 678899999999999999999999999988  44431 11       1112222


Q ss_pred             HhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          661 CSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       661 ~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      +...|++++|.+++++..   .+.|+ ...+..++.++.+.|++++|++.|++.
T Consensus       518 ~~~~~~~~eA~~~~~kAl---~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A  568 (615)
T TIGR00990       518 FQWKQDFIEAENLCEKAL---IIDPECDIAVATMAQLLLQQGDVDEALKLFERA  568 (615)
T ss_pred             HHHhhhHHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            344699999999999987   45676 557888999999999999999999987

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.75  E-value=5e-15  Score=164.66  Aligned_cols=320  Identities=12%  Similarity=0.074  Sum_probs=195.2

Q ss_pred             HHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCC--C-ChhhHHHHHHHHHhc
Q 036290          350 FSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSY--K-NITTWNELLSGYCFN  426 (796)
Q Consensus       350 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~  426 (796)
                      ...++..+.+.|+++.|..++.........+ ......++.+....|++++|...|+++..  | +...+..+...+.+.
T Consensus        45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~  123 (656)
T PRK15174         45 IILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS  123 (656)
T ss_pred             HHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence            4445555666666666666666665543222 22233333444445666666666555542  2 333445555555555


Q ss_pred             CCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHH
Q 036290          427 CCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFS  506 (796)
Q Consensus       427 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  506 (796)
                      |++++|...+++...                                   .. +.+...+..+...+...|++++|...+
T Consensus       124 g~~~~Ai~~l~~Al~-----------------------------------l~-P~~~~a~~~la~~l~~~g~~~eA~~~~  167 (656)
T PRK15174        124 KQYATVADLAEQAWL-----------------------------------AF-SGNSQIFALHLRTLVLMDKELQAISLA  167 (656)
T ss_pred             CCHHHHHHHHHHHHH-----------------------------------hC-CCcHHHHHHHHHHHHHCCChHHHHHHH
Confidence            555555555555544                                   32 233444445555555555555555555


Q ss_pred             hcCCC--C-CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCc
Q 036290          507 NGAER--L-DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTE  583 (796)
Q Consensus       507 ~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  583 (796)
                      +.+..  | +...+..+ ..+...|++++|...++.+.+....++...+..+..++...|++++|...++...+.... +
T Consensus       168 ~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~  245 (656)
T PRK15174        168 RTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-G  245 (656)
T ss_pred             HHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-C
Confidence            43321  2 22222222 235666777777777777655432333444444556667777777777777777765533 5


Q ss_pred             hhHHHHHHHHHHhcCCHHH----HHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHH
Q 036290          584 VYVASAVIDAYAKCGDIKG----ARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVS  656 (796)
Q Consensus       584 ~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~  656 (796)
                      ...+..+..+|...|++++    |...+++.+..  .+...+..+...+...|++++|...+++..+  ..| +...+..
T Consensus       246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~  323 (656)
T PRK15174        246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAM  323 (656)
T ss_pred             HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence            5666677788888888775    67777655543  3666778888888888888888888888887  456 4455666


Q ss_pred             HHHHHhccCCHHHHHHHHHHhHhhcCCCCCc-hHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          657 VMSACSHKGLVDKGCLLFKSMDSQYGMQPSP-DCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       657 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      +..++...|++++|...++++..   ..|+. ..+..+..++...|+.++|.+.+++.
T Consensus       324 La~~l~~~G~~~eA~~~l~~al~---~~P~~~~~~~~~a~al~~~G~~deA~~~l~~a  378 (656)
T PRK15174        324 YARALRQVGQYTAASDEFVQLAR---EKGVTSKWNRYAAAALLQAGKTSEAESVFEHY  378 (656)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            77788888888888888888873   35553 33444567788888888888888876

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.74  E-value=1.1e-13  Score=157.66  Aligned_cols=416  Identities=8%  Similarity=-0.041  Sum_probs=200.6

Q ss_pred             HHHHhhccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCC---CCcchHHHHHHHHHhCCC
Q 036290          251 NALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMAD---KDVISWNTLFGGFSENKN  327 (796)
Q Consensus       251 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~  327 (796)
                      -.+......|+.++|.+++....... +.+...+..+...+...|++++|..++++..+   .+...+..+...+...|+
T Consensus        20 d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~   98 (765)
T PRK10049         20 DWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQ   98 (765)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence            33444444455555554444443311 22333345555555555555555555555322   233445555555566666


Q ss_pred             ccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHh
Q 036290          328 PGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDN  407 (796)
Q Consensus       328 ~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~  407 (796)
                      .++|+..+++..+.  .|+...+..+...+...|+.++|...++.+.+.. +.+...+..+...+...+..+.|...++.
T Consensus        99 ~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~  175 (765)
T PRK10049         99 YDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDD  175 (765)
T ss_pred             HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence            66666666665544  2222114444445555555555555555555542 22333334455555556666666666655


Q ss_pred             CCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHh-----cccCcH---HHHHHHHHHHHHh-C
Q 036290          408 VSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETC-----CRSENQ---QMVGQIHGAIIKT-G  478 (796)
Q Consensus       408 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~-----~~~~~~---~~a~~~~~~~~~~-~  478 (796)
                      ... +.. +..-                        ...+  .....+...     ...+++   +.|.+.++.+.+. .
T Consensus       176 ~~~-~p~-~~~~------------------------l~~~--~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~  227 (765)
T PRK10049        176 ANL-TPA-EKRD------------------------LEAD--AAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWH  227 (765)
T ss_pred             CCC-CHH-HHHH------------------------HHHH--HHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcc
Confidence            543 111 0000                        0000  000011111     111122   4455555555443 1


Q ss_pred             CCCCch-hHh-H---HHHHHHhcCCcchHHHHHhcCCCCC---H-hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-
Q 036290          479 FSSCGY-ICS-S---LIKSYVNFGQLDNSFEFSNGAERLD---M-ASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPD-  548 (796)
Q Consensus       479 ~~~~~~-~~~-~---l~~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-  548 (796)
                      ..|+.. .+. .   .+..+...|++++|...|+.+.+.+   + ..-..+...|...|++++|...|+++.+..  |. 
T Consensus       228 ~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~  305 (765)
T PRK10049        228 DNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHP--ETI  305 (765)
T ss_pred             cCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcC--CCC
Confidence            111111 100 0   0112233345555555554444311   0 011112344555555555555555544321  11 


Q ss_pred             ----HHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCC---hhHHHH
Q 036290          549 ----EYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSND---VIVYNT  621 (796)
Q Consensus       549 ----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~  621 (796)
                          ......+..++...|++++|.+.++.+...... ....+.                    .....|+   ...+..
T Consensus       306 ~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~-~~~~~~--------------------~~~~~p~~~~~~a~~~  364 (765)
T PRK10049        306 ADLSDEELADLFYSLLESENYPGALTVTAHTINNSPP-FLRLYG--------------------SPTSIPNDDWLQGQSL  364 (765)
T ss_pred             CCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCc-eEeecC--------------------CCCCCCCchHHHHHHH
Confidence                122233333444444444444444444432111 000000                    0000112   123455


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHh
Q 036290          622 LIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSR  699 (796)
Q Consensus       622 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~  699 (796)
                      +...+...|++++|+++++++..  ..| +...+..+...+...|++++|++.++++.   ...|+ ...+..++..+.+
T Consensus       365 ~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al---~l~Pd~~~l~~~~a~~al~  439 (765)
T PRK10049        365 LSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAE---VLEPRNINLEVEQAWTALD  439 (765)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---hhCCCChHHHHHHHHHHHH
Confidence            66677788888888888888877  456 55667777778888888888888888887   45677 5666677777888


Q ss_pred             cCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 036290          700 NGYLEDAKHVIEIM-PFQPSPTVYRSLL  726 (796)
Q Consensus       700 ~g~~~~A~~~~~~~-~~~p~~~~~~~l~  726 (796)
                      .|++++|..+++++ ...|+...-..+-
T Consensus       440 ~~~~~~A~~~~~~ll~~~Pd~~~~~~~~  467 (765)
T PRK10049        440 LQEWRQMDVLTDDVVAREPQDPGVQRLA  467 (765)
T ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            88888888888887 4556554433333

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.71  E-value=1.3e-12  Score=145.48  Aligned_cols=98  Identities=10%  Similarity=0.071  Sum_probs=75.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHH
Q 036290          619 YNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDM  696 (796)
Q Consensus       619 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~  696 (796)
                      +..++..+...|+..+|++.++++..  ..| |......+...+...|.+.+|++.++.+.   .+.|+ .......+..
T Consensus       419 ~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~---~l~P~~~~~~~~~~~~  493 (822)
T PRK14574        419 QTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVE---SLAPRSLILERAQAET  493 (822)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh---hhCCccHHHHHHHHHH
Confidence            33456667888899999999999877  556 77778888888888899999999987776   55777 5666678888


Q ss_pred             HHhcCChHHHHHHHHhC-CCCCCHHH
Q 036290          697 LSRNGYLEDAKHVIEIM-PFQPSPTV  721 (796)
Q Consensus       697 ~~~~g~~~~A~~~~~~~-~~~p~~~~  721 (796)
                      +...|++.+|..+.+.. ...|+...
T Consensus       494 al~l~e~~~A~~~~~~l~~~~Pe~~~  519 (822)
T PRK14574        494 AMALQEWHQMELLTDDVISRSPEDIP  519 (822)
T ss_pred             HHhhhhHHHHHHHHHHHHhhCCCchh
Confidence            88889999998888776 34555443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.70  E-value=1.9e-11  Score=129.24  Aligned_cols=674  Identities=11%  Similarity=0.035  Sum_probs=388.6

Q ss_pred             hhhHHHHHhhhhccCChhhHHHHHHHHHHhCCCCCchhhHHHHHHHHccCChhHHHHHhccc---CCCCcchHHHHHHHH
Q 036290           44 PIFLAKSLSLSENLKSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEM---AERNLVSWTLIVSAA  120 (796)
Q Consensus        44 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~ll~~~  120 (796)
                      ............-.|++..|.+++.++++.. +.+...|..|...|-..|+.+++...+-..   ...|-.-|-.+-.-.
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls  217 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS  217 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            3344444444455599999999999999875 445678999999999999999998876543   234556788888888


Q ss_pred             HhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhcCCCChhHhhHHH----HHHHccCCh
Q 036290          121 IQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVL----NFYAKLGDV  196 (796)
Q Consensus       121 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li----~~~~~~g~~  196 (796)
                      .+.|++.+|.-.|.+.++.. +++...+-.=...|-+.|+...|..-+.++....++.|..-.-.++    +.|...++-
T Consensus       218 ~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~  296 (895)
T KOG2076|consen  218 EQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER  296 (895)
T ss_pred             HhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence            89999999999999998764 3333333444567778999999999999998887755555444444    445556777


Q ss_pred             hHHHHHhhccCC--C---CceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHHHHHHHH
Q 036290          197 AAAERVFYSISS--D---DVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGL  271 (796)
Q Consensus       197 ~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  271 (796)
                      +.|.+.++....  .   +...++.++..+.+...++.|......+......+|...+..-=          .-..-...
T Consensus       297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~----------~~~~~~~~  366 (895)
T KOG2076|consen  297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE----------RRREEPNA  366 (895)
T ss_pred             HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh----------hccccccc
Confidence            888888876654  2   44568888899999999999999888887644444444331000          00000000


Q ss_pred             HHH--hcCCCChHHHHHHHH-hhhcCCCHHHHHHHHhhcCC----CCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCC
Q 036290          272 IIR--SEVECSISIVNALID-MYIKSSGMDYAFKVFERMAD----KDVISWNTLFGGFSENKNPGQTASLFHKFILSGSR  344 (796)
Q Consensus       272 ~~~--~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~  344 (796)
                      ...  .++.++..+....+. ...+.+...+++.-|-....    -++..|--+..++.+.|++.+|+.+|..+.....-
T Consensus       367 ~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~  446 (895)
T KOG2076|consen  367 LCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY  446 (895)
T ss_pred             cccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc
Confidence            000  012223333111111 11222333333322221111    13445556666666666666666666666555433


Q ss_pred             CCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCChh----------
Q 036290          345 PNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNIT----------  414 (796)
Q Consensus       345 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~----------  414 (796)
                      -+...|-.+-.++-..|..++|.+.++...... +.+...-..|...+-+.|+.++|.+.++.+..||..          
T Consensus       447 ~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e  525 (895)
T KOG2076|consen  447 QNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPE  525 (895)
T ss_pred             cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHH
Confidence            344455555566666666666666666665542 223444556777788888888888888887765522          


Q ss_pred             --hHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHH
Q 036290          415 --TWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKS  492 (796)
Q Consensus       415 --~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  492 (796)
                        .--.....+.+.|+.++=+.+...|.....      ....+  +   .+...+.  .......+.+........++.+
T Consensus       526 ~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~------~~~~~--f---~~~~k~r--~~~~~~~~~~~~~~~~~~~~~~  592 (895)
T KOG2076|consen  526 RRILAHRCDILFQVGKREEFINTASTLVDDFL------KKRYI--F---PRNKKKR--RRAIAGTTSKRYSELLKQIIRA  592 (895)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH------HHHHh--c---chHHHHH--HHhhccccccccchhHHHHHHH
Confidence              222233455566666665555555544210      00000  0   0000000  0000000112222333333444


Q ss_pred             HHhcCCcchHHHHHhcC--------CCC---CH-hhHHHHHHHHHHcCChhHHHHHHHHHHHcCC--CCCH---HHHHHH
Q 036290          493 YVNFGQLDNSFEFSNGA--------ERL---DM-ASWGAMMSALVHQGHNHEAVTIFHSLVEAGE--KPDE---YILGTI  555 (796)
Q Consensus       493 ~~~~g~~~~A~~~~~~~--------~~~---~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~--~p~~---~t~~~l  555 (796)
                      -.+.++.....+-...-        ...   +. ..+.-++.++++.+++++|+.+...+....+  .++.   ..=...
T Consensus       593 ~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~  672 (895)
T KOG2076|consen  593 REKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLG  672 (895)
T ss_pred             HhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHH
Confidence            44443322222111111        111   11 1234567788899999999999888765432  2222   122345


Q ss_pred             HHHHhccCchHHHHHHHHHHHHh-CCCC---chhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C--ChhHHHHHHHHHHh
Q 036290          556 LNSCAAIGAYQRTKSIHPFVIKL-GFNT---EVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N--DVIVYNTLIMAYAH  628 (796)
Q Consensus       556 l~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~--~~~~~~~li~~~~~  628 (796)
                      +.++...+++..|...++.|... +...   -...|+.....+.+.++-.--.+++...+.. +  +..........+..
T Consensus       673 l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~  752 (895)
T KOG2076|consen  673 LKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFV  752 (895)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhh
Confidence            56777889999999998888764 2221   2345555555555555544444444333332 2  23333333344566


Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHhc----------cCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHH
Q 036290          629 HGLVSEAMEIFDKMKLANLQPSQATFVSVMS-ACSH----------KGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDML  697 (796)
Q Consensus       629 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~~~~----------~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~  697 (796)
                      .+.+..|+..+-+.-.  ..||....+.++. ++.+          .-..-.+..++.+..+.....-...++..++++|
T Consensus       753 ~~s~~~Al~~y~ra~~--~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRay  830 (895)
T KOG2076|consen  753 NASFKHALQEYMRAFR--QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAY  830 (895)
T ss_pred             ccchHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            7888899988777766  5576555444332 1211          1124456666666653322222356667799999


Q ss_pred             HhcCChHHHHHHHHhC-CCCC---------C----HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 036290          698 SRNGYLEDAKHVIEIM-PFQP---------S----PTVYRSLLSGCRIHGNKELGEWASEKL  745 (796)
Q Consensus       698 ~~~g~~~~A~~~~~~~-~~~p---------~----~~~~~~l~~~~~~~g~~~~A~~~~~~~  745 (796)
                      -..|-..-|.+++++. ++.|         +    ...-..|.-.|..+|+...|.+++++-
T Consensus       831 h~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ky  892 (895)
T KOG2076|consen  831 HQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKY  892 (895)
T ss_pred             HHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhh
Confidence            9999999999999988 3321         1    122234555688999999999998864

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.68  E-value=1.5e-10  Score=117.62  Aligned_cols=487  Identities=11%  Similarity=0.037  Sum_probs=274.8

Q ss_pred             cCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCC---CCcchHHHHHHHHHhCCCccHHHHH
Q 036290          258 LVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMAD---KDVISWNTLFGGFSENKNPGQTASL  334 (796)
Q Consensus       258 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~l  334 (796)
                      ...+.+.|.-++....+.- +.+...|    -+|++..-++.|.++++...+   .+...|.+-...--.+|+.+....+
T Consensus       388 elE~~~darilL~rAvecc-p~s~dLw----lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki  462 (913)
T KOG0495|consen  388 ELEEPEDARILLERAVECC-PQSMDLW----LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI  462 (913)
T ss_pred             hccChHHHHHHHHHHHHhc-cchHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence            3344444555555555442 2222323    334444556666666666554   2555565555555566666666665


Q ss_pred             HHH----HHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          335 FHK----FILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLD--EENVTSSLIYMFCRCGAVEMAHSVFDNV  408 (796)
Q Consensus       335 ~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~  408 (796)
                      +.+    +...|+..+...|..=...|-..|..-.+..+....+..|+..  -..++..-...|.+.+.++-|+.+|...
T Consensus       463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a  542 (913)
T KOG0495|consen  463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA  542 (913)
T ss_pred             HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence            543    3455666666666666666666666666666666666666544  2345666666666777777777666655


Q ss_pred             CC---CChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchh
Q 036290          409 SY---KNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYI  485 (796)
Q Consensus       409 ~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  485 (796)
                      .+   .+...|......--..|..+....+|++.... ++-....|.......-..|++..|..++....+.. +.+..+
T Consensus       543 lqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseei  620 (913)
T KOG0495|consen  543 LQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEI  620 (913)
T ss_pred             HhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHH
Confidence            43   24445655555555566666666666666653 22233334333444445566666666666666655 335566


Q ss_pred             HhHHHHHHHhcCCcchHHHHHhcCCC--CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcc
Q 036290          486 CSSLIKSYVNFGQLDNSFEFSNGAER--LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDE-YILGTILNSCAAI  562 (796)
Q Consensus       486 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~  562 (796)
                      +-+-+..-.....++.|..+|.+...  +....|.--+...--.++.++|.+++++..+.  -|+- ..|-.+-+.+.+.
T Consensus       621 wlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~  698 (913)
T KOG0495|consen  621 WLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQM  698 (913)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHH
Confidence            66666666666666666666665543  44455554444444456666666666665543  3333 2333444445555


Q ss_pred             CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-CC-ChhHHHHHHHHHHhcCChHHHHHHHH
Q 036290          563 GAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFN-SN-DVIVYNTLIMAYAHHGLVSEAMEIFD  640 (796)
Q Consensus       563 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~  640 (796)
                      ++.+.|.+.|..=.+. ++..+..|-.+.+.--+.|.+-.|..+++...- .| +...|-..|+.-.+.|+.+.|..+..
T Consensus       699 ~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lma  777 (913)
T KOG0495|consen  699 ENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMA  777 (913)
T ss_pred             HHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHH
Confidence            5555555544332221 222444555556666666666666666644322 22 55666666666666666666666665


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH
Q 036290          641 KMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP  719 (796)
Q Consensus       641 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~  719 (796)
                      +..+. ++.+...|.--|....+.++-......++      .+.-|+.....+...+....+++.|.++|++. ...||.
T Consensus       778 kALQe-cp~sg~LWaEaI~le~~~~rkTks~DALk------kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~  850 (913)
T KOG0495|consen  778 KALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALK------KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDN  850 (913)
T ss_pred             HHHHh-CCccchhHHHHHHhccCcccchHHHHHHH------hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence            55542 22244445555555555444333333332      23445566666667777777777777777666 444544


Q ss_pred             -HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290          720 -TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK  761 (796)
Q Consensus       720 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  761 (796)
                       .+|-.+...+..+|.-++-.+++.+...-+|.....|-..+.
T Consensus       851 GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK  893 (913)
T KOG0495|consen  851 GDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK  893 (913)
T ss_pred             chHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence             566666666677777777777777777777766665544443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.64  E-value=4.7e-11  Score=126.27  Aligned_cols=590  Identities=11%  Similarity=0.057  Sum_probs=314.3

Q ss_pred             CCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhcCCCChhHhhHHHHHHHccCChhHHHHHh
Q 036290          124 GEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVF  203 (796)
Q Consensus       124 ~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~  203 (796)
                      |+.++|..++.+.++.. +-+...|.+|-..+-..|+.+.+...+-.+.... +.|...|..+-......|.++.|.-.|
T Consensus       153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy  230 (895)
T KOG2076|consen  153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCY  230 (895)
T ss_pred             CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHH
Confidence            66666666666666543 2344456666666666666555544433322222 224455666666666666666666666


Q ss_pred             hccCCCCceeHHHH---HHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHH----HHhhccCCCchHHHHHHHHHHHhc
Q 036290          204 YSISSDDVGCWNAM---IGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINA----LQGCSLVADFDIGRQIHGLIIRSE  276 (796)
Q Consensus       204 ~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l----l~~~~~~~~~~~a~~~~~~~~~~~  276 (796)
                      .+..+.+..-|..+   +..|-+.|+...|.+.|.++.....+.|..-+..+    ++.+...++.+.|.+.++.....+
T Consensus       231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~  310 (895)
T KOG2076|consen  231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE  310 (895)
T ss_pred             HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence            66554333323322   34556667777777777766654332222222222    222333333344444444333311


Q ss_pred             -CCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHc--------------
Q 036290          277 -VECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILS--------------  341 (796)
Q Consensus       277 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~--------------  341 (796)
                       -..+...                               ++.++..+.+...++.+......+...              
T Consensus       311 ~~~~~~ed-------------------------------~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~  359 (895)
T KOG2076|consen  311 KDEASLED-------------------------------LNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDER  359 (895)
T ss_pred             cccccccH-------------------------------HHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhh
Confidence             1222333                               444444444444444444444444331              


Q ss_pred             -------------CCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCChHHHHHHHH
Q 036290          342 -------------GSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGF--LDEENVTSSLIYMFCRCGAVEMAHSVFD  406 (796)
Q Consensus       342 -------------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~  406 (796)
                                   ++.++... ..+.-++.+....+....+.....+..+  .-+...|..+.++|...|++.+|..+|.
T Consensus       360 ~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~  438 (895)
T KOG2076|consen  360 RREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLS  438 (895)
T ss_pred             ccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence                         11111111 1222334444555555555555555553  3355667777777777777777777777


Q ss_pred             hCCC----CChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHH-HHHHHHHHhcccCcHHHHHHHHHHHH------
Q 036290          407 NVSY----KNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGC-TFFYVVETCCRSENQQMVGQIHGAII------  475 (796)
Q Consensus       407 ~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~------  475 (796)
                      .+..    .+...|-.+..+|...|..++|.+.|.....  ..|+.. .-.++-..+-+.|+.++|.+.+..+.      
T Consensus       439 ~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~--~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~  516 (895)
T KOG2076|consen  439 PITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI--LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRN  516 (895)
T ss_pred             HHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccc
Confidence            7664    3555777777777777777777777777766  334332 23334445566777777777777643      


Q ss_pred             --HhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCC--------------------------CCHhhHHHHHHHHHHc
Q 036290          476 --KTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAER--------------------------LDMASWGAMMSALVHQ  527 (796)
Q Consensus       476 --~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------------------~~~~~~~~li~~~~~~  527 (796)
                        ..+.+|...........+...|+.++=..+-..|..                          ........++.+-.+.
T Consensus       517 ~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~  596 (895)
T KOG2076|consen  517 AEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKA  596 (895)
T ss_pred             hhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhcc
Confidence              233455555555566667777776653322111111                          0111122223333333


Q ss_pred             CChhHHHHHH------HHHHHcCCCCCH--HHHHHHHHHHhccCchHHHHHHHHHHHHhC-CCCchh----HHHHHHHHH
Q 036290          528 GHNHEAVTIF------HSLVEAGEKPDE--YILGTILNSCAAIGAYQRTKSIHPFVIKLG-FNTEVY----VASAVIDAY  594 (796)
Q Consensus       528 ~~~~~A~~~~------~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~----~~~~li~~~  594 (796)
                      ++.....+-.      .--...|+.-+.  ..+.-++.++++.+.+++|..+...+.... +..+..    .-...+.+.
T Consensus       597 ~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s  676 (895)
T KOG2076|consen  597 TDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKAS  676 (895)
T ss_pred             CchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHH
Confidence            3322111111      111122333332  234556778888899999988887776632 222222    234456666


Q ss_pred             HhcCCHHHHHHHHhccCCC------C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHhccC
Q 036290          595 AKCGDIKGARMAFDQSFNS------N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVM--SACSHKG  665 (796)
Q Consensus       595 ~~~g~~~~A~~~~~~~~~~------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll--~~~~~~g  665 (796)
                      +..+++..|...++.++..      + -...||.....+.+.++-.--.+.+.....  ..|+......++  +-....+
T Consensus       677 ~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~  754 (895)
T KOG2076|consen  677 LYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNA  754 (895)
T ss_pred             HhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhcc
Confidence            7788898888888555543      1 334566666666666554333344333332  333332222222  2234567


Q ss_pred             CHHHHHHHHHHhHhhcCCCCCchHHHH-HHHHHH----------hcCChHHHHHHHHhC-CC-CC--CHHHHHHHHHHHH
Q 036290          666 LVDKGCLLFKSMDSQYGMQPSPDCYGC-LVDMLS----------RNGYLEDAKHVIEIM-PF-QP--SPTVYRSLLSGCR  730 (796)
Q Consensus       666 ~~~~A~~~~~~~~~~~~~~p~~~~~~~-l~~~~~----------~~g~~~~A~~~~~~~-~~-~p--~~~~~~~l~~~~~  730 (796)
                      .+..|+..+-++.   ...|+....+. +.-++.          |.-..-.+..++.+. .. .+  ...++..+..+|.
T Consensus       755 s~~~Al~~y~ra~---~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh  831 (895)
T KOG2076|consen  755 SFKHALQEYMRAF---RQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYH  831 (895)
T ss_pred             chHHHHHHHHHHH---HhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence            7888998877766   45677444442 332222          112344556666555 11 22  3467888999999


Q ss_pred             hcCChHHHHHHHHHHHccCCCCCc
Q 036290          731 IHGNKELGEWASEKLLLLLPKNDA  754 (796)
Q Consensus       731 ~~g~~~~A~~~~~~~~~~~p~~~~  754 (796)
                      ..|=...|...|+++++..|.+..
T Consensus       832 ~~gl~~LA~~YYekvL~~~p~~~~  855 (895)
T KOG2076|consen  832 QIGLVHLAVSYYEKVLEVSPKDVT  855 (895)
T ss_pred             HcccHHHHHHHHHHHhCCCccccc
Confidence            999999999999999999876443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.64  E-value=2.4e-10  Score=116.15  Aligned_cols=573  Identities=10%  Similarity=0.030  Sum_probs=413.3

Q ss_pred             cCChhHHHHHHHHHHHhcC-CCChhHhhHHHHHHHccCChhHHHHHhhccC---CCCceeHHHHHHHHHhCCCchHHHHH
Q 036290          158 MGASEFGYSIHCFALKIRI-EKNPFVGCSVLNFYAKLGDVAAAERVFYSIS---SDDVGCWNAMIGGYAHCGYGFEALNV  233 (796)
Q Consensus       158 ~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~  233 (796)
                      .+|+..|+-++....+.++ .|...+.++.+.  -..|.+..|..+...--   ..+...|-.-|    +....+.|..+
T Consensus       264 l~DikKaR~llKSvretnP~hp~gWIAsArLE--EvagKl~~Ar~~I~~GCe~cprSeDvWLeai----RLhp~d~aK~v  337 (913)
T KOG0495|consen  264 LEDIKKARLLLKSVRETNPKHPPGWIASARLE--EVAGKLSVARNLIMKGCEECPRSEDVWLEAI----RLHPPDVAKTV  337 (913)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHH--HHhhHHHHHHHHHHHHHhhCCchHHHHHHHH----hcCChHHHHHH
Confidence            3567778888888877764 344444444333  23455666655543211   12222232211    22233334444


Q ss_pred             HHHHHHCCCCCCHhhHHHHHHhhccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCC---C
Q 036290          234 VSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMAD---K  310 (796)
Q Consensus       234 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~  310 (796)
                      .-.....  -|+....  -+.+.--..+...-..++...+++ ++.++..|.+.+.    ....++|..++.+..+   .
T Consensus       338 vA~Avr~--~P~Sv~l--W~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKaAVe----lE~~~darilL~rAveccp~  408 (913)
T KOG0495|consen  338 VANAVRF--LPTSVRL--WLKAADLESDTKNKKRVLRKALEH-IPRSVRLWKAAVE----LEEPEDARILLERAVECCPQ  408 (913)
T ss_pred             HHHHHHh--CCCChhh--hhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHHHHh----ccChHHHHHHHHHHHHhccc
Confidence            4333321  2222211  122221122222233344444433 3445666655543    3455567777777654   2


Q ss_pred             CcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHH----HHhCCCCchhHHH
Q 036290          311 DVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLA----LHCGFLDEENVTS  386 (796)
Q Consensus       311 ~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~  386 (796)
                      +...|    .++++..-++.|..++++.++. ++-+...|.+.-..--..|+.+...++++.-    ...|+..+..-|-
T Consensus       409 s~dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl  483 (913)
T KOG0495|consen  409 SMDLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWL  483 (913)
T ss_pred             hHHHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHH
Confidence            44444    4566777788999999998875 6667778877777777888999988887764    4578888888888


Q ss_pred             HHHHHHHhcCChHHHHHHHHhCCC------CChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcc
Q 036290          387 SLIYMFCRCGAVEMAHSVFDNVSY------KNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCR  460 (796)
Q Consensus       387 ~ll~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~  460 (796)
                      .=...+-+.|..-.+..+......      .--.+|+.-...|.+.+.++-|..+|....+. .+.+...|......--.
T Consensus       484 ~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~  562 (913)
T KOG0495|consen  484 KEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKS  562 (913)
T ss_pred             HHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHh
Confidence            888888888888887777766542      22348999999999999999999999988874 34455667777776677


Q ss_pred             cCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCC---CCHhhHHHHHHHHHHcCChhHHHHHH
Q 036290          461 SENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAER---LDMASWGAMMSALVHQGHNHEAVTIF  537 (796)
Q Consensus       461 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~  537 (796)
                      .|..+....+++.+...- +-....+-.....+-..|+...|..++....+   .+...|-+-+.....+..++.|..+|
T Consensus       563 hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~ll  641 (913)
T KOG0495|consen  563 HGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLL  641 (913)
T ss_pred             cCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHH
Confidence            888999999999988874 55566677778888899999999999887765   35567888888889999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C-C
Q 036290          538 HSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N-D  615 (796)
Q Consensus       538 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~  615 (796)
                      .+....  .|+...|.--+..--..++.++|.+++++..+.- +.-...|..+.+.+.+.++.+.|.+.|....+. | .
T Consensus       642 akar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~  718 (913)
T KOG0495|consen  642 AKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS  718 (913)
T ss_pred             HHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC
Confidence            998764  7787777777776777889999999998877643 224567888889999999999999999777765 4 6


Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHH
Q 036290          616 VIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLV  694 (796)
Q Consensus       616 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~  694 (796)
                      +..|-.|.+.-.+.|+.-+|..++++.+-.  .| +...|...|+.-.+.|..+.|..+..++.++  +..+...|..-|
T Consensus       719 ipLWllLakleEk~~~~~rAR~ildrarlk--NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI  794 (913)
T KOG0495|consen  719 IPLWLLLAKLEEKDGQLVRARSILDRARLK--NPKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAI  794 (913)
T ss_pred             chHHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHH
Confidence            778888888888999999999999999874  36 7788999999999999999999999988844  555578888888


Q ss_pred             HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290          695 DMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK  761 (796)
Q Consensus       695 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  761 (796)
                      .+.-+.++-......+++.  ..|+.+.-.+...+.....++.|+..|+++++.+|++..+|..+-.
T Consensus       795 ~le~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fyk  859 (913)
T KOG0495|consen  795 WLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYK  859 (913)
T ss_pred             HhccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHH
Confidence            8888888888888877776  4466677777888888899999999999999999999998876654

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.53  E-value=2.8e-11  Score=117.29  Aligned_cols=457  Identities=15%  Similarity=0.116  Sum_probs=281.6

Q ss_pred             HHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHH-HHHhhccCCCchHHHHHHHHHHHhcCCCCh----HHHHHHHHhhh
Q 036290          218 IGGYAHCGYGFEALNVVSSMLFEGITMDKYTFIN-ALQGCSLVADFDIGRQIHGLIIRSEVECSI----SIVNALIDMYI  292 (796)
Q Consensus       218 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~  292 (796)
                      ..-|.-+....+|+..|+-..+..+-|+.-.+-. +-..+.+.+.+..|.+++...+..-...+.    .+.+.+--.+.
T Consensus       208 aqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfi  287 (840)
T KOG2003|consen  208 AQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI  287 (840)
T ss_pred             HHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE
Confidence            3445555666777777777777666666543321 122244556666777777666554332222    23333444567


Q ss_pred             cCCCHHHHHHHHhhcCC--CCcch-HHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHH--------HHHHHhcccC
Q 036290          293 KSSGMDYAFKVFERMAD--KDVIS-WNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFS--------ILLRQCGKLL  361 (796)
Q Consensus       293 ~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~--------~ll~~~~~~~  361 (796)
                      +.|.+++|+..|+...+  |+..+ +|..| .+..-|+.++..+.|.+|..--..||..-|.        .++.-..+. 
T Consensus       288 q~gqy~dainsfdh~m~~~pn~~a~~nl~i-~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n-  365 (840)
T KOG2003|consen  288 QAGQYDDAINSFDHCMEEAPNFIAALNLII-CAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN-  365 (840)
T ss_pred             ecccchhhHhhHHHHHHhCccHHhhhhhhh-hheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh-
Confidence            78888888888877654  55443 44444 3444677788888888887654444444331        111111000 


Q ss_pred             ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCChh-------------hH--------HHHH
Q 036290          362 DLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNIT-------------TW--------NELL  420 (796)
Q Consensus       362 ~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-------------~~--------~~li  420 (796)
                            ..+..|.+.. ..+..-+            +-.+.+++.-+..|+-.             .+        -.-.
T Consensus       366 ------d~lk~~ek~~-ka~aek~------------i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka  426 (840)
T KOG2003|consen  366 ------DHLKNMEKEN-KADAEKA------------IITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKA  426 (840)
T ss_pred             ------HHHHHHHHhh-hhhHHHH------------HHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHH
Confidence                  0111111111 0000000            00011111111111110             00        0112


Q ss_pred             HHHHhcCCchHHHHHHHHHHhcCCcccHHHHH--HHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCC
Q 036290          421 SGYCFNCCDADVLKTFCNIWESGVEVNGCTFF--YVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQ  498 (796)
Q Consensus       421 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  498 (796)
                      ..+.++|+++.|+++++-+....-+.-...-+  ..+.-+....++..|.+.-+..+... .-+......-.+.-...|+
T Consensus       427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd  505 (840)
T KOG2003|consen  427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD  505 (840)
T ss_pred             HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence            35788999999999998887654333332222  23333333456777777666554432 1222222222233456789


Q ss_pred             cchHHHHHhcCCCCCHhhHHHHHH---HHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHH
Q 036290          499 LDNSFEFSNGAERLDMASWGAMMS---ALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFV  575 (796)
Q Consensus       499 ~~~A~~~~~~~~~~~~~~~~~li~---~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~  575 (796)
                      +++|.+.+++....|...-.++..   .+-..|+.++|++.|-++... +.-+......+.+.|....+...|.+++.+.
T Consensus       506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~  584 (840)
T KOG2003|consen  506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA  584 (840)
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence            999999999988877665444433   456789999999999887543 2445566667777788888888888877655


Q ss_pred             HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 036290          576 IKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQAT  653 (796)
Q Consensus       576 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t  653 (796)
                      ... ++.|+.+...|.+.|-+.|+-..|.+.+-+...- | ++.+..-|...|....-+++++.+|++..-  ++|+..-
T Consensus       585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~k  661 (840)
T KOG2003|consen  585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSK  661 (840)
T ss_pred             ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHH
Confidence            432 4457888999999999999999998877454443 3 778888888889999999999999999877  8899999


Q ss_pred             HHHHHHHH-hccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCC
Q 036290          654 FVSVMSAC-SHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGY  702 (796)
Q Consensus       654 ~~~ll~~~-~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  702 (796)
                      |..++..| .+.|++++|.++++...+  .++-|..++..|++.+...|-
T Consensus       662 wqlmiasc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  662 WQLMIASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHhccccc
Confidence            99888665 578999999999999874  466778899999988877663

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.53  E-value=6.4e-10  Score=108.90  Aligned_cols=445  Identities=13%  Similarity=0.091  Sum_probs=316.4

Q ss_pred             CCCHHHHHHHHhhcCC---CCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcc-hHHHHHHHhcccCChHHHHHH
Q 036290          294 SSGMDYAFKVFERMAD---KDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHV-TFSILLRQCGKLLDLDLGLQL  369 (796)
Q Consensus       294 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~  369 (796)
                      .+++..|..+|++...   +++..|-..+..-.++..+..|..+++.....  -|-+. .+--.+..--..|++..|.++
T Consensus        86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqi  163 (677)
T KOG1915|consen   86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQI  163 (677)
T ss_pred             HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHH
Confidence            3556677777777654   46667777777778888888888888887654  33322 122223333456888888888


Q ss_pred             HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCC--CCChhhHHHHHHHHHhcCCchHHHHHHHHHHhc-C-Cc
Q 036290          370 QCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVS--YKNITTWNELLSGYCFNCCDADVLKTFCNIWES-G-VE  445 (796)
Q Consensus       370 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g-~~  445 (796)
                      |+.-.+.  .|+...|.+.|+.-.+-..++.|..+++...  .|++.+|--...--.+.|....+..+|....+. | -.
T Consensus       164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~  241 (677)
T KOG1915|consen  164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE  241 (677)
T ss_pred             HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence            8877765  7888899999998888899999999988765  588888888888888888888888888877653 1 11


Q ss_pred             ccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCC--chhHhHHHHHHHhcCCcchHHHHH--------hcCCCC---
Q 036290          446 VNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSC--GYICSSLIKSYVNFGQLDNSFEFS--------NGAERL---  512 (796)
Q Consensus       446 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~--------~~~~~~---  512 (796)
                      -+...|.++..--.+...++.|.-++...++.- |.+  ...|..+...--+-|+.....+..        +.+...   
T Consensus       242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~  320 (677)
T KOG1915|consen  242 EAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY  320 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence            122334444444445677888888888877753 322  455666665555666655444332        222222   


Q ss_pred             CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH--HHHH----HHH-HH---hccCchHHHHHHHHHHHHhCCCC
Q 036290          513 DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEY--ILGT----ILN-SC---AAIGAYQRTKSIHPFVIKLGFNT  582 (796)
Q Consensus       513 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--t~~~----ll~-~~---~~~~~~~~a~~~~~~~~~~~~~~  582 (796)
                      |-.+|--.+..--..|+.+...++|++.... ++|-..  .|.-    -|+ +|   ....+.+.+.++++...+ -++.
T Consensus       321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPH  398 (677)
T KOG1915|consen  321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPH  398 (677)
T ss_pred             CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCc
Confidence            4556666777777789999999999998765 455321  1111    122 22   356789999999999888 3333


Q ss_pred             chhHHHHHH----HHHHhcCCHHHHHHHHhccCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHH
Q 036290          583 EVYVASAVI----DAYAKCGDIKGARMAFDQSFNS-NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVS  656 (796)
Q Consensus       583 ~~~~~~~li----~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~  656 (796)
                      ...+|.-+-    ....++.++..|.+++...+.. |-..+|...|..-.+.++++...+++++..+  ..| |-.+|..
T Consensus       399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~k  476 (677)
T KOG1915|consen  399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSK  476 (677)
T ss_pred             ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHH
Confidence            455555543    3345789999999999888776 7888899999999999999999999999999  667 7788888


Q ss_pred             HHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----
Q 036290          657 VMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVYRSLLSGCR-----  730 (796)
Q Consensus       657 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~-----  730 (796)
                      ....-...|+.+.|..+|+-+.++..+..-...|.+.|+--...|.++.|..+++++ ...+...+|-++..--.     
T Consensus       477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~  556 (677)
T KOG1915|consen  477 YAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEG  556 (677)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhcccccc
Confidence            877778899999999999999866444444666777888888899999999999998 33444457766655433     


Q ss_pred             hcC-----------ChHHHHHHHHHHHc
Q 036290          731 IHG-----------NKELGEWASEKLLL  747 (796)
Q Consensus       731 ~~g-----------~~~~A~~~~~~~~~  747 (796)
                      +.|           +...|..+|+++..
T Consensus       557 ~~~~~~~~~e~~~~~~~~AR~iferAn~  584 (677)
T KOG1915|consen  557 QEDEDLAELEITDENIKRARKIFERANT  584 (677)
T ss_pred             ccccchhhhhcchhHHHHHHHHHHHHHH
Confidence            344           56788999998875

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.48  E-value=5e-11  Score=115.56  Aligned_cols=435  Identities=12%  Similarity=0.083  Sum_probs=273.1

Q ss_pred             HHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHH-HHHHhcccCChHHHHHHHHHHHHhCCCCchh----HHHHHHHHH
Q 036290          318 LFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSI-LLRQCGKLLDLDLGLQLQCLALHCGFLDEEN----VTSSLIYMF  392 (796)
Q Consensus       318 li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~ll~~~  392 (796)
                      |..-|..+.-..+|+..|+-..+...-|+...... +-..+.+.+++.+|.++++.....-...+..    +.+.+--.+
T Consensus       207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf  286 (840)
T KOG2003|consen  207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF  286 (840)
T ss_pred             HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence            33445555666778888887777777776654432 2234566777888888887776642222222    234444456


Q ss_pred             HhcCChHHHHHHHHhCCC--CChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCc------------ccHHHHHHHHHH-
Q 036290          393 CRCGAVEMAHSVFDNVSY--KNITTWNELLSGYCFNCCDADVLKTFCNIWESGVE------------VNGCTFFYVVET-  457 (796)
Q Consensus       393 ~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~------------p~~~t~~~ll~~-  457 (796)
                      .+.|.+++|+..|+...+  |+..+--.|+-++...|+.++..+.|.+|......            |+....+..|.. 
T Consensus       287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd  366 (840)
T KOG2003|consen  287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND  366 (840)
T ss_pred             EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence            778888888888877653  66655444555555678888888888888764332            233333222211 


Q ss_pred             ----hcccCcHHHHHHHH---HHHHHhCCCCCch---------------------hHhHHHHHHHhcCCcchHHHHHhcC
Q 036290          458 ----CCRSENQQMVGQIH---GAIIKTGFSSCGY---------------------ICSSLIKSYVNFGQLDNSFEFSNGA  509 (796)
Q Consensus       458 ----~~~~~~~~~a~~~~---~~~~~~~~~~~~~---------------------~~~~l~~~~~~~g~~~~A~~~~~~~  509 (796)
                          ..+. +-..|++..   ..++.--+.|+-.                     .--.-..-|.+.|+++.|.++++-.
T Consensus       367 ~lk~~ek~-~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~  445 (840)
T KOG2003|consen  367 HLKNMEKE-NKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVF  445 (840)
T ss_pred             HHHHHHHh-hhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHH
Confidence                1111 111111111   1111111122110                     0001123466788888888877776


Q ss_pred             CCCCHhhHHHHHH-----HHHH-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCc
Q 036290          510 ERLDMASWGAMMS-----ALVH-QGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTE  583 (796)
Q Consensus       510 ~~~~~~~~~~li~-----~~~~-~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  583 (796)
                      ...|..+-.+...     -|.+ ..++.+|.+.-+...... +-+......--+.....|++++|.+.+++.....-.-.
T Consensus       446 ~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~  524 (840)
T KOG2003|consen  446 EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT  524 (840)
T ss_pred             HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH
Confidence            6654443322211     1222 234555555554433221 11211111111223457899999999998887654433


Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhccC--CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 036290          584 VYVASAVIDAYAKCGDIKGARMAFDQSF--NSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSA  660 (796)
Q Consensus       584 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~  660 (796)
                      ...|+ +.-.+-..|++++|++.|-..-  -..+......+...|....+...|++++.+...  +-| |.....-|...
T Consensus       525 ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dl  601 (840)
T KOG2003|consen  525 EALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADL  601 (840)
T ss_pred             HHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHH
Confidence            33333 2334667899999999883322  235777788888889999999999999877665  666 77888889999


Q ss_pred             HhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHH-HhcCChHH
Q 036290          661 CSHKGLVDKGCLLFKSMDSQYGMQP-SPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVYRSLLSGC-RIHGNKEL  737 (796)
Q Consensus       661 ~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~-~~~g~~~~  737 (796)
                      |-+.|+-..|.+..-+--   ...| +..+...|..-|....-+++|+.+|++. -++|+..-|..++..| .+.|++..
T Consensus       602 ydqegdksqafq~~ydsy---ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqk  678 (840)
T KOG2003|consen  602 YDQEGDKSQAFQCHYDSY---RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQK  678 (840)
T ss_pred             hhcccchhhhhhhhhhcc---cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHH
Confidence            999999999988765443   3444 4888888888899999999999999998 4789999999888775 67799999


Q ss_pred             HHHHHHHHHccCCCCCcceEEec
Q 036290          738 GEWASEKLLLLLPKNDAAHVLLS  760 (796)
Q Consensus       738 A~~~~~~~~~~~p~~~~~~~~l~  760 (796)
                      |..+++...+..|++..-.-.|.
T Consensus       679 a~d~yk~~hrkfpedldclkflv  701 (840)
T KOG2003|consen  679 AFDLYKDIHRKFPEDLDCLKFLV  701 (840)
T ss_pred             HHHHHHHHHHhCccchHHHHHHH
Confidence            99999999999999887654443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.46  E-value=1.6e-10  Score=121.20  Aligned_cols=281  Identities=12%  Similarity=0.053  Sum_probs=176.4

Q ss_pred             cCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHh--HHHHHHHhcCCcchHH
Q 036290          426 NCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICS--SLIKSYVNFGQLDNSF  503 (796)
Q Consensus       426 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~  503 (796)
                      .|+++.|.+.+....+..-.| ...|.....+..+.|+.+.+.+.+..+.+.  .|+...+.  .....+...       
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~-------  166 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLAR-------  166 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHC-------
Confidence            577777776666544332111 112222233335566666666666666543  22222211  223344444       


Q ss_pred             HHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCc
Q 036290          504 EFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTE  583 (796)
Q Consensus       504 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  583 (796)
                                              |+++.|...++++.+.. +-++.....+...+.+.|+++.+.+++..+.+.+..++
T Consensus       167 ------------------------g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~  221 (398)
T PRK10747        167 ------------------------NENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE  221 (398)
T ss_pred             ------------------------CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH
Confidence                                    55555555555544432 22233444444455555555555555555554433321


Q ss_pred             h-------hHHHHHHHHHHhcCCHHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 036290          584 V-------YVASAVIDAYAKCGDIKGARMAFDQSFNS---NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQAT  653 (796)
Q Consensus       584 ~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t  653 (796)
                      .       ..|..++.......+.+...+++ +.++.   .++.....+..++...|+.++|.+++++..+  ..|+...
T Consensus       222 ~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w-~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l  298 (398)
T PRK10747        222 EHRAMLEQQAWIGLMDQAMADQGSEGLKRWW-KNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERL  298 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH-HhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHH
Confidence            1       12222233333344555666666 44433   4777888899999999999999999999988  3455522


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 036290          654 FVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVYRSLLSGCRI  731 (796)
Q Consensus       654 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~  731 (796)
                        .++.+....++.+++.+..+...++   .|+ +..+..+...+.+.|++++|.+.|++. ...|+..++..+...+.+
T Consensus       299 --~~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~  373 (398)
T PRK10747        299 --VLLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDR  373 (398)
T ss_pred             --HHHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence              2334445669999999999999844   566 667889999999999999999999998 678999999999999999


Q ss_pred             cCChHHHHHHHHHHHccC
Q 036290          732 HGNKELGEWASEKLLLLL  749 (796)
Q Consensus       732 ~g~~~~A~~~~~~~~~~~  749 (796)
                      .|+.++|.+++++.+.+.
T Consensus       374 ~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        374 LHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             cCCHHHHHHHHHHHHhhh
Confidence            999999999999998754

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.44  E-value=8.9e-11  Score=123.13  Aligned_cols=277  Identities=11%  Similarity=0.058  Sum_probs=179.3

Q ss_pred             cCChHHHHHHHHhCCCC--Chh-hHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHH--HHHHHhcccCcHHHHHH
Q 036290          395 CGAVEMAHSVFDNVSYK--NIT-TWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFF--YVVETCCRSENQQMVGQ  469 (796)
Q Consensus       395 ~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~  469 (796)
                      .|+++.|.+.+....+.  +.. .|-.......+.|+++.|...+.++.+  ..|+.....  .....+...|+++.|..
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~  174 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAARH  174 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence            69999999999876653  223 333334555889999999999999987  456654333  33557788999999999


Q ss_pred             HHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH
Q 036290          470 IHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDE  549 (796)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~  549 (796)
                      .++.+.+.. |-++.....+...|.+.|++++|.++                               +..+.+.+..++.
T Consensus       175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~-------------------------------l~~l~k~~~~~~~  222 (398)
T PRK10747        175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDI-------------------------------LPSMAKAHVGDEE  222 (398)
T ss_pred             HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHH-------------------------------HHHHHHcCCCCHH
Confidence            999998876 55555666666655555555555544                               4444443322111


Q ss_pred             -------HHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC-ChhHHHH
Q 036290          550 -------YILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSN-DVIVYNT  621 (796)
Q Consensus       550 -------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~  621 (796)
                             .+|..++.......+.+...++++.+-+. .+.++.....+...+...|+.++|.+.+++.++.+ +.  --.
T Consensus       223 ~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~--~l~  299 (398)
T PRK10747        223 HRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDE--RLV  299 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH--HHH
Confidence                   11222222222233334444444443222 23356666777777777788888877776666643 22  122


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhc
Q 036290          622 LIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRN  700 (796)
Q Consensus       622 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  700 (796)
                      ++.+....++.+++++..+...+  ..| |...+..+.+.|.+.|++++|.+.|+...   ...|+...+..+..++.+.
T Consensus       300 ~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al---~~~P~~~~~~~La~~~~~~  374 (398)
T PRK10747        300 LLIPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL---KQRPDAYDYAWLADALDRL  374 (398)
T ss_pred             HHHhhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHc
Confidence            33444455788888888888777  456 44456677778888888888888888887   5578877777888888888


Q ss_pred             CChHHHHHHHHhC
Q 036290          701 GYLEDAKHVIEIM  713 (796)
Q Consensus       701 g~~~~A~~~~~~~  713 (796)
                      |+.++|.+.+++.
T Consensus       375 g~~~~A~~~~~~~  387 (398)
T PRK10747        375 HKPEEAAAMRRDG  387 (398)
T ss_pred             CCHHHHHHHHHHH
Confidence            8888888887764

>TIGR00540 hemY_coli hemY protein

Probab=99.44  E-value=2.6e-10  Score=120.35  Aligned_cols=283  Identities=13%  Similarity=0.003  Sum_probs=173.6

Q ss_pred             hcCCchHHHHHHHHHHhcCCcccHHH-HHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHH
Q 036290          425 FNCCDADVLKTFCNIWESGVEVNGCT-FFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSF  503 (796)
Q Consensus       425 ~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  503 (796)
                      ..|+++.|.+.+.+..+.  .|+... +.....+....|+.+.+.+.+....+..-.+...+....              
T Consensus        96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~--------------  159 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIAR--------------  159 (409)
T ss_pred             hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHH--------------
Confidence            467777777777665443  333222 222334444556666666666555443211111122222              


Q ss_pred             HHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCc
Q 036290          504 EFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTE  583 (796)
Q Consensus       504 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  583 (796)
                                       ...+...|+++.|...++++.+.. +-+......+...+...|+++.+.+.+..+.+.+..+.
T Consensus       160 -----------------a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~  221 (409)
T TIGR00540       160 -----------------TRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD  221 (409)
T ss_pred             -----------------HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH
Confidence                             344445555555665555555542 22334455555555666666666666666655544322


Q ss_pred             hhHHHHHHHHH---H----hcCCHHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 036290          584 VYVASAVIDAY---A----KCGDIKGARMAFDQSFNS---NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQAT  653 (796)
Q Consensus       584 ~~~~~~li~~~---~----~~g~~~~A~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t  653 (796)
                      ......-..++   .    .....+...+.+ +..+.   .+...+..+...+...|+.++|.+++++..+  ..||...
T Consensus       222 ~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~-~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~  298 (409)
T TIGR00540       222 EEFADLEQKAEIGLLDEAMADEGIDGLLNWW-KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRA  298 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH-HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCccc
Confidence            21111111111   1    122233444444 33433   3778888899999999999999999999998  4565542


Q ss_pred             H---HHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-c--hHHHHHHHHHHhcCChHHHHHHHHh--C-CCCCCHHHHHH
Q 036290          654 F---VSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-P--DCYGCLVDMLSRNGYLEDAKHVIEI--M-PFQPSPTVYRS  724 (796)
Q Consensus       654 ~---~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~--~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~  724 (796)
                      .   ..........++.+.+.+.++...+.   .|+ +  ....++...+.+.|++++|.+.|+.  . ...|+...+..
T Consensus       299 ~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~---~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~  375 (409)
T TIGR00540       299 ISLPLCLPIPRLKPEDNEKLEKLIEKQAKN---VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAM  375 (409)
T ss_pred             chhHHHHHhhhcCCCChHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHH
Confidence            1   11222234457888999999888844   555 4  6677999999999999999999994  3 57899998999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHc
Q 036290          725 LLSGCRIHGNKELGEWASEKLLL  747 (796)
Q Consensus       725 l~~~~~~~g~~~~A~~~~~~~~~  747 (796)
                      +...+.+.|+.++|.+++++.+.
T Consensus       376 La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       376 AADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999999999999999999875

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.43  E-value=1.8e-11  Score=125.37  Aligned_cols=280  Identities=15%  Similarity=0.147  Sum_probs=215.8

Q ss_pred             cHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCC------CCHhhHHHHHHHHHHcCChhHHHHH
Q 036290          463 NQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAER------LDMASWGAMMSALVHQGHNHEAVTI  536 (796)
Q Consensus       463 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~  536 (796)
                      +..+|...|.. .-..+.-+..+...+..+|...+++++|.++|+.+.+      .+...|.+.+..+-+.    -++..
T Consensus       334 ~~~~A~~~~~k-lp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~  408 (638)
T KOG1126|consen  334 NCREALNLFEK-LPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY  408 (638)
T ss_pred             HHHHHHHHHHh-hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence            34556666666 3333344456777778888888888888888887765      3667787777665432    23333


Q ss_pred             HH-HHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--
Q 036290          537 FH-SLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--  613 (796)
Q Consensus       537 ~~-~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--  613 (796)
                      +. ++.+. -+-.+.+|.++-++|+-.++.+.|.+.|+..++.+.. ....|+.+..-+.....+|.|...|+..+..  
T Consensus       409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~  486 (638)
T KOG1126|consen  409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDP  486 (638)
T ss_pred             HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence            32 22322 2556789999999999999999999999988876544 6778888888888889999999999666653  


Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHH
Q 036290          614 NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYG  691 (796)
Q Consensus       614 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~  691 (796)
                      .+-..|--+...|.+.++++.|+-.|++..+  +.| +.+....+...+-+.|+.|+|+++++++.   -+.|. +.+-.
T Consensus       487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~---~ld~kn~l~~~  561 (638)
T KOG1126|consen  487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAI---HLDPKNPLCKY  561 (638)
T ss_pred             hhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH---hcCCCCchhHH
Confidence            2445566677889999999999999999998  788 66667777788899999999999999998   45565 55555


Q ss_pred             HHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc
Q 036290          692 CLVDMLSRNGYLEDAKHVIEIM-PFQPSP-TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDA  754 (796)
Q Consensus       692 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  754 (796)
                      ..+..+...+++++|+..++++ .+.|+. .++..+...|.+.|+.+.|+.-+--+.+++|.-..
T Consensus       562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            6778888899999999999999 466755 67788888899999999999999999999997544

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.39  E-value=2.5e-12  Score=128.84  Aligned_cols=253  Identities=15%  Similarity=0.180  Sum_probs=105.3

Q ss_pred             HHHHHHHhcCCcchHHHHHhcC-CC----CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 036290          488 SLIKSYVNFGQLDNSFEFSNGA-ER----LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAI  562 (796)
Q Consensus       488 ~l~~~~~~~g~~~~A~~~~~~~-~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~  562 (796)
                      .+...+.+.|++++|.++++.. ..    .+...|..+.......++.+.|.+.++++...+.. ++..+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence            4456666777777777777432 22    23444444555555567777888888877665422 44455555555 577


Q ss_pred             CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC----CCChhHHHHHHHHHHhcCChHHHHHH
Q 036290          563 GAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFN----SNDVIVYNTLIMAYAHHGLVSEAMEI  638 (796)
Q Consensus       563 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~  638 (796)
                      +++++|.+++....+..  ++...+..++..+.+.++++++.++++....    .++...|..+...+.+.|+.++|++.
T Consensus        91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~  168 (280)
T PF13429_consen   91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD  168 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            77777777776554433  3555666777788888888888888755222    24777888888999999999999999


Q ss_pred             HHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 036290          639 FDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQ  716 (796)
Q Consensus       639 ~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~  716 (796)
                      +++..+  ..| |......++..+...|+.+++.++++...+.  ...|+..+..+..++...|+.++|..++++. ...
T Consensus       169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~  244 (280)
T PF13429_consen  169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN  244 (280)
T ss_dssp             HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence            999998  678 4667888999999999999999999888855  2555778889999999999999999999998 334


Q ss_pred             C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 036290          717 P-SPTVYRSLLSGCRIHGNKELGEWASEKLLLL  748 (796)
Q Consensus       717 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  748 (796)
                      | |+.+...+..++...|+.++|.++.+++++.
T Consensus       245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  245 PDDPLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             TT-HHHHHHHHHHHT------------------
T ss_pred             ccccccccccccccccccccccccccccccccc
Confidence            5 6777788899999999999999999988753

>TIGR00540 hemY_coli hemY protein

Probab=99.39  E-value=3.1e-10  Score=119.76  Aligned_cols=284  Identities=10%  Similarity=-0.028  Sum_probs=188.8

Q ss_pred             HhcCChHHHHHHHHhCCC--CC-hhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHH--HHHHHHHHhcccCcHHHH
Q 036290          393 CRCGAVEMAHSVFDNVSY--KN-ITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGC--TFFYVVETCCRSENQQMV  467 (796)
Q Consensus       393 ~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a  467 (796)
                      ...|+++.|.+.+.+..+  |+ ...+-....+..+.|+++.|.+.+.+..+.  .|+..  .-......+...|+++.|
T Consensus        95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~A  172 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAA  172 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHH
Confidence            468999999999988765  33 233444557788899999999999998764  34443  333346667778889999


Q ss_pred             HHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 036290          468 GQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKP  547 (796)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p  547 (796)
                      ...++.+.+.. |-++.+...                               +...+.+.|++++|.+.+..+.+.++.+
T Consensus       173 l~~l~~l~~~~-P~~~~~l~l-------------------------------l~~~~~~~~d~~~a~~~l~~l~k~~~~~  220 (409)
T TIGR00540       173 RHGVDKLLEMA-PRHKEVLKL-------------------------------AEEAYIRSGAWQALDDIIDNMAKAGLFD  220 (409)
T ss_pred             HHHHHHHHHhC-CCCHHHHHH-------------------------------HHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence            88888888776 334444444                               4445555566666666666666554332


Q ss_pred             CHHHHHHHHHHH---hccCchHHHHHHHHHHHHhCC---CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-CChhH--
Q 036290          548 DEYILGTILNSC---AAIGAYQRTKSIHPFVIKLGF---NTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-NDVIV--  618 (796)
Q Consensus       548 ~~~t~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~--  618 (796)
                      +......-..+.   ...+..+.+.+.+..+.+...   +.+...+..+...+...|+.++|.+.+++.++. ||...  
T Consensus       221 ~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~  300 (409)
T TIGR00540       221 DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS  300 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch
Confidence            221111111111   122222222333333333322   137778888888999999999999999777774 54432  


Q ss_pred             -HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHH
Q 036290          619 -YNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQA---TFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLV  694 (796)
Q Consensus       619 -~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~  694 (796)
                       ...........++.+.+.+.+++..+  ..|+..   ...++.+.|.+.|++++|.+.|+....- ...|+...+..+.
T Consensus       301 ~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~~~~La  377 (409)
T TIGR00540       301 LPLCLPIPRLKPEDNEKLEKLIEKQAK--NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDANDLAMAA  377 (409)
T ss_pred             hHHHHHhhhcCCCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHHHHHHH
Confidence             12222223345778889999988887  567444   4567888999999999999999954322 6689988888999


Q ss_pred             HHHHhcCChHHHHHHHHhC
Q 036290          695 DMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       695 ~~~~~~g~~~~A~~~~~~~  713 (796)
                      ..+.+.|+.++|.+++++.
T Consensus       378 ~ll~~~g~~~~A~~~~~~~  396 (409)
T TIGR00540       378 DAFDQAGDKAEAAAMRQDS  396 (409)
T ss_pred             HHHHHcCCHHHHHHHHHHH
Confidence            9999999999999999874

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.39  E-value=1.2e-09  Score=105.51  Aligned_cols=286  Identities=14%  Similarity=0.065  Sum_probs=204.0

Q ss_pred             cCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHH
Q 036290          426 NCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEF  505 (796)
Q Consensus       426 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  505 (796)
                      .|++.+|.++..+-.+.+-.|- ..|..-..+.-..|+.+.+-.++.+..+..-.++..++-+........|+++.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            5777777777777666554442 234455566667777777777777777764466666777777777778888777766


Q ss_pred             HhcCC---CCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCC
Q 036290          506 SNGAE---RLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNT  582 (796)
Q Consensus       506 ~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  582 (796)
                      .+...   ..++........+|.+.|++.....++..|.+.|.--++..-.                 +           
T Consensus       176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~-----------------l-----------  227 (400)
T COG3071         176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR-----------------L-----------  227 (400)
T ss_pred             HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH-----------------H-----------
Confidence            55443   3567777778888888888888888888888777554432100                 0           


Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036290          583 EVYVASAVIDAYAKCGDIKGARMAFDQSFNS---NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMS  659 (796)
Q Consensus       583 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  659 (796)
                      ...++..+++-....+..+.-...+ +.++.   .++..-.+++.-+.+.|+.++|.++.++..+.+.+|+.    ...-
T Consensus       228 e~~a~~glL~q~~~~~~~~gL~~~W-~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~  302 (400)
T COG3071         228 EQQAWEGLLQQARDDNGSEGLKTWW-KNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLI  302 (400)
T ss_pred             HHHHHHHHHHHHhccccchHHHHHH-HhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHH
Confidence            0112222233223333333333344 33332   35667778888888999999999999999888877772    2233


Q ss_pred             HHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHH
Q 036290          660 ACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVYRSLLSGCRIHGNKELG  738 (796)
Q Consensus       660 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A  738 (796)
                      .+.+-++.+.=++..+...+.++..|  ..+.+|...|.+.+.|.+|.+.|+.. +..|+..+|..+..++.+.|++..|
T Consensus       303 ~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A  380 (400)
T COG3071         303 PRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEA  380 (400)
T ss_pred             hhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHH
Confidence            56788888888888888886765555  77888999999999999999999987 7899999999999999999999999


Q ss_pred             HHHHHHHHc
Q 036290          739 EWASEKLLL  747 (796)
Q Consensus       739 ~~~~~~~~~  747 (796)
                      .++.++.+-
T Consensus       381 ~~~r~e~L~  389 (400)
T COG3071         381 EQVRREALL  389 (400)
T ss_pred             HHHHHHHHH
Confidence            999999885

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=3.1e-09  Score=104.18  Aligned_cols=369  Identities=12%  Similarity=0.058  Sum_probs=253.5

Q ss_pred             CCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHH--H
Q 036290          377 GFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFY--V  454 (796)
Q Consensus       377 g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~--l  454 (796)
                      +...|...+-..-..+.+.|....|++.|......-+..|.+.+....-..+.+.+..+.     .|...|...+..  +
T Consensus       159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~-----~~l~~~~h~M~~~F~  233 (559)
T KOG1155|consen  159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILV-----VGLPSDMHWMKKFFL  233 (559)
T ss_pred             cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHH-----hcCcccchHHHHHHH
Confidence            334444433333344556778888888887776544444444443322222222221111     122222222222  2


Q ss_pred             HHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCC------CHhhHHHHHHHHHHcC
Q 036290          455 VETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERL------DMASWGAMMSALVHQG  528 (796)
Q Consensus       455 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~  528 (796)
                      ..++......+++..-.......|++.+...-+....+.-...++|.|+.+|+.+.+.      |..+|+.++-.-  ..
T Consensus       234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~--~~  311 (559)
T KOG1155|consen  234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK--ND  311 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH--hh
Confidence            3445555677778777888888888888888888888888889999999999988763      455666655432  22


Q ss_pred             ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 036290          529 HNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFD  608 (796)
Q Consensus       529 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  608 (796)
                      +  ..+..+..-...--+-.+.|..++.+.|+-.++.++|..+|+...+.+.. ....|+.+..-|....+...|.+-++
T Consensus       312 ~--skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR  388 (559)
T KOG1155|consen  312 K--SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR  388 (559)
T ss_pred             h--HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence            1  12222222211112444567888888888889999999999999887766 66788888899999999999999997


Q ss_pred             ccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC
Q 036290          609 QSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP  685 (796)
Q Consensus       609 ~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p  685 (796)
                      .++.-  .|-..|-.|.++|.-.+-..-|+-.|++..+  ++| |...|.+|..+|.+.++.++|++.|.....-  -+.
T Consensus       389 rAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--~dt  464 (559)
T KOG1155|consen  389 RAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL--GDT  464 (559)
T ss_pred             HHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--ccc
Confidence            77765  4888999999999999999999999999998  778 8888999999999999999999999988733  233


Q ss_pred             CchHHHHHHHHHHhcCChHHHHHHHHhC-------C-CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcce
Q 036290          686 SPDCYGCLVDMLSRNGYLEDAKHVIEIM-------P-FQPSP-TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAH  756 (796)
Q Consensus       686 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  756 (796)
                      +...+..|.++|-+-++.++|...+++.       + ..|.. ..--.|..-+.+.+++++|.........-++.-..+-
T Consensus       465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak  544 (559)
T KOG1155|consen  465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAK  544 (559)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHH
Confidence            5688889999999999999999888776       2 22211 1222355557888999999888777776655444443


Q ss_pred             EEe
Q 036290          757 VLL  759 (796)
Q Consensus       757 ~~l  759 (796)
                      .+|
T Consensus       545 ~Ll  547 (559)
T KOG1155|consen  545 ALL  547 (559)
T ss_pred             HHH
Confidence            333

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.38  E-value=1.1e-07  Score=93.51  Aligned_cols=448  Identities=13%  Similarity=0.139  Sum_probs=257.1

Q ss_pred             cCChhHHHHHhhccCC---CCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHHHHHH
Q 036290          193 LGDVAAAERVFYSISS---DDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIH  269 (796)
Q Consensus       193 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~  269 (796)
                      .+++..|..+|+....   .+...|-.-+..-.++.....|..++++....=...|.. |--.+..=-..|++..|.++|
T Consensus        86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRqif  164 (677)
T KOG1915|consen   86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQIF  164 (677)
T ss_pred             HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHHHH
Confidence            4667778888877654   345556667777778888888888888776532222221 212222223346666666666


Q ss_pred             HHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcC--CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHc-CC-CC
Q 036290          270 GLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMA--DKDVISWNTLFGGFSENKNPGQTASLFHKFILS-GS-RP  345 (796)
Q Consensus       270 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~-g~-~p  345 (796)
                      +....  .+|+...|++.|+.-.+-..++.|..++++..  .|++.+|-....--.++|....+..+|+...+. |- .-
T Consensus       165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~  242 (677)
T KOG1915|consen  165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE  242 (677)
T ss_pred             HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence            66543  35666666666666666666666666666543  466666666555555666666666666655432 10 00


Q ss_pred             CcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCChHHHHHHH---HhC-----CCC---C
Q 036290          346 NHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDE--ENVTSSLIYMFCRCGAVEMAHSVF---DNV-----SYK---N  412 (796)
Q Consensus       346 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~g~~~~A~~~~---~~~-----~~~---~  412 (796)
                      +...|.+....-.+...++.|.-+|...+..- +.+  ...|..+...--+-|+.....+..   ..+     ...   |
T Consensus       243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n  321 (677)
T KOG1915|consen  243 AEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN  321 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence            11122222222233445555555555555431 111  233444444333444433332222   111     111   2


Q ss_pred             hhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccH-------HHHHHHHHHh---cccCcHHHHHHHHHHHHHhCCCCC
Q 036290          413 ITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNG-------CTFFYVVETC---CRSENQQMVGQIHGAIIKTGFSSC  482 (796)
Q Consensus       413 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~t~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~  482 (796)
                      -.+|-..+..--..|+.+...++|+....+ ++|-.       ..|.-+=-+|   ....+.+.+.++++..++ =+|..
T Consensus       322 YDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHk  399 (677)
T KOG1915|consen  322 YDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHK  399 (677)
T ss_pred             chHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcc
Confidence            234444444444455555555555555543 23311       1111111111   122344444444444444 12222


Q ss_pred             chhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 036290          483 GYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAI  562 (796)
Q Consensus       483 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~  562 (796)
                      ..++..+                           |-....--.++.+...|.+++....  |..|...+|...|..=.+.
T Consensus       400 kFtFaKi---------------------------WlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL  450 (677)
T KOG1915|consen  400 KFTFAKI---------------------------WLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQL  450 (677)
T ss_pred             cchHHHH---------------------------HHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHH
Confidence            3333222                           2222333456778888888887765  6689999999999998999


Q ss_pred             CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC----ChhHHHHHHHHHHhcCChHHHHHH
Q 036290          563 GAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSN----DVIVYNTLIMAYAHHGLVSEAMEI  638 (796)
Q Consensus       563 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~  638 (796)
                      ++++....+++.....++. +..+|......-...|+.+.|..+|.-++.+|    ....|.+.|..-...|.++.|..+
T Consensus       451 ~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~L  529 (677)
T KOG1915|consen  451 REFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARAL  529 (677)
T ss_pred             hhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHH
Confidence            9999999999999988776 77788888888888999999999997778777    345677777777789999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHh-----ccC-----------CHHHHHHHHHHhH
Q 036290          639 FDKMKLANLQPSQATFVSVMSACS-----HKG-----------LVDKGCLLFKSMD  678 (796)
Q Consensus       639 ~~~m~~~g~~p~~~t~~~ll~~~~-----~~g-----------~~~~A~~~~~~~~  678 (796)
                      ++++++.  .+....|.++..--.     ..|           ....|..+|+++.
T Consensus       530 YerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn  583 (677)
T KOG1915|consen  530 YERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN  583 (677)
T ss_pred             HHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence            9999884  444456655543222     233           4556777777665

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.35  E-value=2.2e-08  Score=104.66  Aligned_cols=376  Identities=12%  Similarity=0.084  Sum_probs=244.6

Q ss_pred             HHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCC---CChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHH
Q 036290          374 LHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSY---KNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCT  450 (796)
Q Consensus       374 ~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t  450 (796)
                      ....+..|..+|..|.-++.++|+++.+.+.|++...   .....|+.+...+...|....|..++++-......|+..+
T Consensus       315 r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s  394 (799)
T KOG4162|consen  315 RLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS  394 (799)
T ss_pred             HHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence            3345567888888898999999999999999988764   3455788888888888888888888887765443454444


Q ss_pred             HHHHHH-Hhc-ccCcHHHHHHHHHHHHHh--CC--CCCchhHhHHHHHHHhcCC-----------cchHHHHHhcCCC--
Q 036290          451 FFYVVE-TCC-RSENQQMVGQIHGAIIKT--GF--SSCGYICSSLIKSYVNFGQ-----------LDNSFEFSNGAER--  511 (796)
Q Consensus       451 ~~~ll~-~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~--  511 (796)
                      -..+.. .|. +.+..+++..+...++..  +.  ...+..|..+.-+|...-.           ..++.+.+++..+  
T Consensus       395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d  474 (799)
T KOG4162|consen  395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD  474 (799)
T ss_pred             HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence            433333 332 346666666666666551  11  2223344444444432211           1234445555433  


Q ss_pred             -CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHH-hCCCC-------
Q 036290          512 -LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIK-LGFNT-------  582 (796)
Q Consensus       512 -~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~-------  582 (796)
                       .|+...--+.--|+-.++.+.|++...+..+.+-.-+...|..+.-.+...+++..|+.+.+.... .|...       
T Consensus       475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~  554 (799)
T KOG4162|consen  475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKI  554 (799)
T ss_pred             CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhh
Confidence             122222223334566677888888888887775566777777777777777788888777765443 22210       


Q ss_pred             -----------chhHHHHHHHHHHh---------c--------------CCHHHH-------HHHHh----cc-----CC
Q 036290          583 -----------EVYVASAVIDAYAK---------C--------------GDIKGA-------RMAFD----QS-----FN  612 (796)
Q Consensus       583 -----------~~~~~~~li~~~~~---------~--------------g~~~~A-------~~~~~----~~-----~~  612 (796)
                                 ...+...++..+-.         .              ++..+|       .....    .+     ++
T Consensus       555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp  634 (799)
T KOG4162|consen  555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP  634 (799)
T ss_pred             hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence                       01111111111110         0              000001       00110    00     11


Q ss_pred             ------CCC------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHh
Q 036290          613 ------SND------VIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDS  679 (796)
Q Consensus       613 ------~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~  679 (796)
                            .|+      ...|......+.+.++.++|...+.+...  +.| ....|......+...|++++|.+.|.... 
T Consensus       635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al-  711 (799)
T KOG4162|consen  635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL-  711 (799)
T ss_pred             cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH-
Confidence                  111      12455666778888999999988888877  556 55667766677888999999999998887 


Q ss_pred             hcCCCCC-chHHHHHHHHHHhcCChHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc
Q 036290          680 QYGMQPS-PDCYGCLVDMLSRNGYLEDAKH--VIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDA  754 (796)
Q Consensus       680 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  754 (796)
                        .+.|+ +.+..++..++.+.|+..-|..  ++..+ .+.| +...|..+...+.+.||.++|...|+-++++++.+|.
T Consensus       712 --~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  712 --ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             --hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence              78998 8899999999999998777776  77776 6666 5689999999999999999999999999999988776

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.35  E-value=7.3e-07  Score=91.38  Aligned_cols=175  Identities=11%  Similarity=0.108  Sum_probs=127.3

Q ss_pred             ChhHhhHHHHHHHccCChhHHHHHhhccCC-----CCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHH
Q 036290          179 NPFVGCSVLNFYAKLGDVAAAERVFYSISS-----DDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINAL  253 (796)
Q Consensus       179 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll  253 (796)
                      -+.++-.-+....++|++...+..|++...     .....|...+.-....|-++-++.++++..+    .++..-+.-|
T Consensus       101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyi  176 (835)
T KOG2047|consen  101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYI  176 (835)
T ss_pred             CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHH
Confidence            345666667778888999999999986532     3556799999988899999999999999976    3444467778


Q ss_pred             HhhccCCCchHHHHHHHHHHHhc------CCCChHHHHHHHHhhhcCCCHH---HHHHHHhhcCCC--C--cchHHHHHH
Q 036290          254 QGCSLVADFDIGRQIHGLIIRSE------VECSISIVNALIDMYIKSSGMD---YAFKVFERMADK--D--VISWNTLFG  320 (796)
Q Consensus       254 ~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~--~--~~~~~~li~  320 (796)
                      ..++..+++++|.+.+..++...      .+.+-..|.-+.+..+++.+.-   ....+++.+..+  |  ...|++|.+
T Consensus       177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAd  256 (835)
T KOG2047|consen  177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLAD  256 (835)
T ss_pred             HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHH
Confidence            88899999999999888776432      2445567777777777664432   244555555542  3  357999999


Q ss_pred             HHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcc
Q 036290          321 GFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGK  359 (796)
Q Consensus       321 ~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~  359 (796)
                      .|.+.|.+++|.++|++....  ..+...|+.+..+|+.
T Consensus       257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~  293 (835)
T KOG2047|consen  257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQ  293 (835)
T ss_pred             HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHH
Confidence            999999999999999997654  3344455556555543

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.34  E-value=2.5e-06  Score=91.79  Aligned_cols=646  Identities=11%  Similarity=0.083  Sum_probs=324.7

Q ss_pred             HhhhhccCChhhHHHHHHHH----------HHhCCCCCchhhHHHHHHHHccCChhHHHHHhcccCC--CCcchHHHHHH
Q 036290           51 LSLSENLKSRVLGTQVHGHI----------VKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAE--RNLVSWTLIVS  118 (796)
Q Consensus        51 l~~~~~~~~~~~a~~~~~~~----------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ll~  118 (796)
                      +..|.+.+....+..+|++.          .+.|..||..   .+++...+ -.++.+.+....|++  +...-.+.+..
T Consensus       475 L~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kKvGyTPdym---flLq~l~r-~sPD~~~qFa~~l~Q~~~~~~die~I~D  550 (1666)
T KOG0985|consen  475 LSIYLRANVPAKVIQCFAETGQFKKIILYAKKVGYTPDYM---FLLQQLKR-SSPDQALQFAMMLVQDEEPLADIEQIVD  550 (1666)
T ss_pred             HHHHHHcCCcHHHHHHHHHhcchhHHHHHHHHcCCCccHH---HHHHHHHc-cChhHHHHHHHHhhccCCCcccHHHHHH
Confidence            34455555555555555432          3457777643   24444444 567777776665544  44455777777


Q ss_pred             HHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhcCCCChhHhhHHHHHHHccCChhH
Q 036290          119 AAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAA  198 (796)
Q Consensus       119 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~  198 (796)
                      .+........+..++-..... ..|+.....+=+-----.+    |-++-+.+.-.+.-. ..-+..+...|.+.|-...
T Consensus       551 lFme~N~iQq~TSFLLdaLK~-~~Pd~g~LQTrLLE~NL~~----aPqVADAILgN~mFt-HyDra~IAqLCEKAGL~qr  624 (1666)
T KOG0985|consen  551 LFMELNLIQQCTSFLLDALKL-NSPDEGHLQTRLLEMNLVH----APQVADAILGNDMFT-HYDRAEIAQLCEKAGLLQR  624 (1666)
T ss_pred             HHHHHHhhhhhHHHHHHHhcC-CChhhhhHHHHHHHHHhcc----chHHHHHHHhccccc-cccHHHHHHHHHhcchHHH
Confidence            777777777777777666543 3555554433221111111    222223333333221 2226667788889999999


Q ss_pred             HHHHhhccCC--CCce-----eHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHHHHHHHH
Q 036290          199 AERVFYSISS--DDVG-----CWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGL  271 (796)
Q Consensus       199 A~~~~~~~~~--~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  271 (796)
                      |.+.+..+..  +.++     .-.-+ ..|.-.-.++++.++++.|...+++-|..+...+..-|...=..+...++|+.
T Consensus       625 aLehytDl~DIKR~vVhth~L~pEwL-v~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~  703 (1666)
T KOG0985|consen  625 ALEHYTDLYDIKRVVVHTHLLNPEWL-VNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFES  703 (1666)
T ss_pred             HHHhcccHHHHHHHHHHhccCCHHHH-HHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHh
Confidence            9988877653  1111     11112 23444457889999999999988888877766665555544444445555554


Q ss_pred             HHHh-----------cCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCC-------------------C-----------
Q 036290          272 IIRS-----------EVECSISIVNALIDMYIKSSGMDYAFKVFERMAD-------------------K-----------  310 (796)
Q Consensus       272 ~~~~-----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------------~-----------  310 (796)
                      ....           ++..|+.+.-..|.+.++.|.+.+.+++.++-.-                   |           
T Consensus       704 fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fV  783 (1666)
T KOG0985|consen  704 FKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFV  783 (1666)
T ss_pred             hccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccH
Confidence            4321           3456777778889999999999999888776431                   1           


Q ss_pred             -CcchH------HHHHHHHHhCCCccHHHHHHHHHHHcCCCC-----------CcchHHHHHHHhcccCChHHHHHHHHH
Q 036290          311 -DVISW------NTLFGGFSENKNPGQTASLFHKFILSGSRP-----------NHVTFSILLRQCGKLLDLDLGLQLQCL  372 (796)
Q Consensus       311 -~~~~~------~~li~~~~~~~~~~~a~~l~~~m~~~g~~p-----------~~~t~~~ll~~~~~~~~~~~a~~~~~~  372 (796)
                       |.+.|      -..|..|.+.-++...-.+.-.+....+.-           ....-..+..-+-+.+++..-..+++.
T Consensus       784 hdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~  863 (1666)
T KOG0985|consen  784 HDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLES  863 (1666)
T ss_pred             HHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHH
Confidence             11111      112333333322222111111111100000           000011122222333444444444555


Q ss_pred             HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhC------------CCCCh-------------------h----hHH
Q 036290          373 ALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNV------------SYKNI-------------------T----TWN  417 (796)
Q Consensus       373 ~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~------------~~~~~-------------------~----~~~  417 (796)
                      ....| .-|..++|+|...|..+++-.+-  ++++-            .++|.                   -    .|-
T Consensus       864 ~i~eG-~~d~a~hnAlaKIyIDSNNnPE~--fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK  940 (1666)
T KOG0985|consen  864 LIQEG-SQDPATHNALAKIYIDSNNNPER--FLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFK  940 (1666)
T ss_pred             HHhcc-CcchHHHhhhhheeecCCCChHH--hcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHH
Confidence            55555 34555666666655544332211  00000            00000                   0    111


Q ss_pred             HHHHHHHhcCCch---HHH--------HHHHHHHhcCC--cccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhC--CCCC
Q 036290          418 ELLSGYCFNCCDA---DVL--------KTFCNIWESGV--EVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTG--FSSC  482 (796)
Q Consensus       418 ~li~~~~~~g~~~---~a~--------~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~  482 (796)
                      ...+.+.+..+.+   +.+        .+.++..+.++  ..|+...+..+.++...+-..+..++++.++=..  +..+
T Consensus       941 ~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~ 1020 (1666)
T KOG0985|consen  941 SQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEN 1020 (1666)
T ss_pred             HHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccc
Confidence            1111111122211   111        12222222221  1122223333333333333333333333332111  0001


Q ss_pred             chhHhH---------------------------HHHHHHhcCCcchHHHHHhcCCC------------------------
Q 036290          483 GYICSS---------------------------LIKSYVNFGQLDNSFEFSNGAER------------------------  511 (796)
Q Consensus       483 ~~~~~~---------------------------l~~~~~~~g~~~~A~~~~~~~~~------------------------  511 (796)
                      ...-|.                           +.......+-+++|..+|+....                        
T Consensus      1021 ~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~ 1100 (1666)
T KOG0985|consen 1021 RNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAER 1100 (1666)
T ss_pred             hhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHh
Confidence            111111                           11112222233344444433211                        


Q ss_pred             -CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHH
Q 036290          512 -LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAV  590 (796)
Q Consensus       512 -~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  590 (796)
                       ..+..|..+..+-.+.|...+|.+-|-+      .-|+..|.-+++.+.+.|.+++-.+++...++..-.|.+.  +.|
T Consensus      1101 ~n~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eL 1172 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SEL 1172 (1666)
T ss_pred             hCChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHH
Confidence             2456788899998899999988887755      3467789999999999999999999998888877766554  578


Q ss_pred             HHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 036290          591 IDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKG  670 (796)
Q Consensus       591 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A  670 (796)
                      +-+|++.+++.+..+++    ..|+......+.+-|...|.++.|.-+|....         .|..|...+...|+++.|
T Consensus      1173 i~AyAkt~rl~elE~fi----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1173 IFAYAKTNRLTELEEFI----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred             HHHHHHhchHHHHHHHh----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHH
Confidence            89999999999888776    23455555555555666666665555543321         244444444444444444


Q ss_pred             HHHHHHhHh---------------------hcCCC--CCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 036290          671 CLLFKSMDS---------------------QYGMQ--PSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSL  725 (796)
Q Consensus       671 ~~~~~~~~~---------------------~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l  725 (796)
                      ...-+++-+                     --|+.  ....-+.-|+.-|-..|-+++-+.+++.. |+.. .-..|..|
T Consensus      1240 VD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTEL 1319 (1666)
T KOG0985|consen 1240 VDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTEL 1319 (1666)
T ss_pred             HHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHH
Confidence            433222210                     00221  22334455666666666666666666654 4332 22344444


Q ss_pred             HHHHHh
Q 036290          726 LSGCRI  731 (796)
Q Consensus       726 ~~~~~~  731 (796)
                      .-.|.+
T Consensus      1320 aiLYsk 1325 (1666)
T KOG0985|consen 1320 AILYSK 1325 (1666)
T ss_pred             HHHHHh
Confidence            444444

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=1.3e-08  Score=98.18  Aligned_cols=310  Identities=12%  Similarity=-0.023  Sum_probs=226.7

Q ss_pred             cccHHHHHHHHHHhcc--cCcHHHHHHHHHHHHH-hCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHH-
Q 036290          445 EVNGCTFFYVVETCCR--SENQQMVGQIHGAIIK-TGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAM-  520 (796)
Q Consensus       445 ~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-  520 (796)
                      .|...+....+.+++.  .++...+...+-.+.. .-++.+......+.+++...|+.++|...|++....|+.+...| 
T Consensus       191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD  270 (564)
T KOG1174|consen  191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD  270 (564)
T ss_pred             CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence            3444444444444432  3444444444444433 45677889999999999999999999999998876555443332 


Q ss_pred             --HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 036290          521 --MSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCG  598 (796)
Q Consensus       521 --i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  598 (796)
                        .--+.+.|+.+....+.+.+.... .-....|..-.......+++..|..+.+..++.... +...+-.-..++...|
T Consensus       271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~  348 (564)
T KOG1174|consen  271 LYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALE  348 (564)
T ss_pred             HHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhcc
Confidence              334567788888888888876542 122233333333445677888898888887776544 3444444456788899


Q ss_pred             CHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhc-cCCHHHHHHHH
Q 036290          599 DIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVM-SACSH-KGLVDKGCLLF  674 (796)
Q Consensus       599 ~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~-~g~~~~A~~~~  674 (796)
                      +.++|.-.|+....-  -+...|.-|+.+|...|++.+|..+-+..... +.-+..+...+- ..|.- ..--++|.+++
T Consensus       349 R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~  427 (564)
T KOG1174|consen  349 RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFA  427 (564)
T ss_pred             chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHH
Confidence            999999888655543  38899999999999999999999988776652 233555655442 33332 23468899999


Q ss_pred             HHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 036290          675 KSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKN  752 (796)
Q Consensus       675 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  752 (796)
                      ++..   .+.|+ ......+...+...|+.++++.++++. ...||....+.|...+...+.+.+|...|..+++++|++
T Consensus       428 ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~  504 (564)
T KOG1174|consen  428 EKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS  504 (564)
T ss_pred             Hhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence            8877   67898 778888999999999999999999987 678999999999999999999999999999999999999


Q ss_pred             CcceEEec
Q 036290          753 DAAHVLLS  760 (796)
Q Consensus       753 ~~~~~~l~  760 (796)
                      ..+...|-
T Consensus       505 ~~sl~Gl~  512 (564)
T KOG1174|consen  505 KRTLRGLR  512 (564)
T ss_pred             hHHHHHHH
Confidence            88766663

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.33  E-value=9.6e-12  Score=124.63  Aligned_cols=160  Identities=16%  Similarity=0.161  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHhccCchHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C-ChhHHHHHHHHH
Q 036290          550 YILGTILNSCAAIGAYQRTKSIHPFVIKL-GFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N-DVIVYNTLIMAY  626 (796)
Q Consensus       550 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~li~~~  626 (796)
                      ..+..++..+...++++.+.++++.+... ..+.+...|..+...+.+.|+.++|.+.+++.+.. | |......++..+
T Consensus       111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~l  190 (280)
T PF13429_consen  111 RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLL  190 (280)
T ss_dssp             -------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            33344444444444444444444444331 12234444555555555555555555555444442 3 345555555556


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCChHH
Q 036290          627 AHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP-SPDCYGCLVDMLSRNGYLED  705 (796)
Q Consensus       627 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~  705 (796)
                      ...|+.+++.++++...+.. +.|...+..+..++...|+.++|+.++++..+.   .| |+.+...+.+++...|+.++
T Consensus       191 i~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~---~p~d~~~~~~~a~~l~~~g~~~~  266 (280)
T PF13429_consen  191 IDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL---NPDDPLWLLAYADALEQAGRKDE  266 (280)
T ss_dssp             CTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH---STT-HHHHHHHHHHHT-------
T ss_pred             HHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc---ccccccccccccccccccccccc
Confidence            66666666555555555432 224444555566666666666666666665522   33 35555566666666666666


Q ss_pred             HHHHHHhC
Q 036290          706 AKHVIEIM  713 (796)
Q Consensus       706 A~~~~~~~  713 (796)
                      |.++.++.
T Consensus       267 A~~~~~~~  274 (280)
T PF13429_consen  267 ALRLRRQA  274 (280)
T ss_dssp             --------
T ss_pred             cccccccc
Confidence            66665543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.33  E-value=5.4e-09  Score=98.68  Aligned_cols=149  Identities=13%  Similarity=0.070  Sum_probs=105.8

Q ss_pred             CHHHHHHHHhccCCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 036290          599 DIKGARMAFDQSFNS-----NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLL  673 (796)
Q Consensus       599 ~~~~A~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~  673 (796)
                      .+.-|.+.| +++..     .++.--.++..++.-..++++++..++.+..--..-|...| .+.++.+..|.+.+|+++
T Consensus       338 HlKiAqqff-qlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEel  415 (557)
T KOG3785|consen  338 HLKIAQQFF-QLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEEL  415 (557)
T ss_pred             HHHHHHHHH-HHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHH
Confidence            455566666 44433     24445556677777777889999888888774233343334 467899999999999999


Q ss_pred             HHHhHhhcCCCCCchHH-HHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHccCCC
Q 036290          674 FKSMDSQYGMQPSPDCY-GCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSL-LSGCRIHGNKELGEWASEKLLLLLPK  751 (796)
Q Consensus       674 ~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~p~  751 (796)
                      |-.+... .++ +..+| ..|.++|.++|+++-|++++-++.-..+..+.-.+ ..-|.+.+.+=-|-+.|+.+..++|.
T Consensus       416 f~~is~~-~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~  493 (557)
T KOG3785|consen  416 FIRISGP-EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT  493 (557)
T ss_pred             HhhhcCh-hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence            9887622 333 34444 46788999999999999999988654455544444 45599999999999999988888873

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.31  E-value=1.5e-09  Score=101.44  Aligned_cols=287  Identities=13%  Similarity=0.099  Sum_probs=173.8

Q ss_pred             hcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCC-CCC--chhHhHHHHHHHhcCCcch
Q 036290          425 FNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGF-SSC--GYICSSLIKSYVNFGQLDN  501 (796)
Q Consensus       425 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~g~~~~  501 (796)
                      -+++.++|.++|-+|.+.. +-+..+-.++-+.+.+.|..|.|.++++.+.+..- +.+  ....-.|..-|...|-+|.
T Consensus        47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR  125 (389)
T COG2956          47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR  125 (389)
T ss_pred             hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence            3567888888888887631 11222334455555666666777666666655321 111  1122234444555555555


Q ss_pred             HHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCC
Q 036290          502 SFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFN  581 (796)
Q Consensus       502 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  581 (796)
                      |+.+|..+.+                               .| ..-......|+..|-...+|++|.+.-..+.+.+..
T Consensus       126 AE~~f~~L~d-------------------------------e~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q  173 (389)
T COG2956         126 AEDIFNQLVD-------------------------------EG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ  173 (389)
T ss_pred             HHHHHHHHhc-------------------------------ch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc
Confidence            5555554444                               22 222233334444444444444444444444443332


Q ss_pred             Cc----hhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 036290          582 TE----VYVASAVIDAYAKCGDIKGARMAFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFV  655 (796)
Q Consensus       582 ~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~  655 (796)
                      +.    ...|.-+...+....+.+.|..++.+.+.. | .+..-..+.+.+...|+++.|.+.|+...+.+..--..+..
T Consensus       174 ~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~  253 (389)
T COG2956         174 TYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLE  253 (389)
T ss_pred             cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHH
Confidence            22    123445555566667777777777666654 2 33444456677888999999999999999865444556678


Q ss_pred             HHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc--
Q 036290          656 SVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHV-IEIMPFQPSPTVYRSLLSGCRIH--  732 (796)
Q Consensus       656 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~--  732 (796)
                      .|..+|.+.|+.++....+..+.   ...+....-..+.+......-.+.|..+ .+.+.-+|+...+..++......  
T Consensus       254 ~L~~~Y~~lg~~~~~~~fL~~~~---~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~dae  330 (389)
T COG2956         254 MLYECYAQLGKPAEGLNFLRRAM---ETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAE  330 (389)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHH---HccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcccc
Confidence            88899999999999999999888   3455655555566655554444555544 45567889999998888885433  


Q ss_pred             -CChHHHHHHHHHHHc
Q 036290          733 -GNKELGEWASEKLLL  747 (796)
Q Consensus       733 -g~~~~A~~~~~~~~~  747 (796)
                       |..++...++++++.
T Consensus       331 eg~~k~sL~~lr~mvg  346 (389)
T COG2956         331 EGRAKESLDLLRDMVG  346 (389)
T ss_pred             ccchhhhHHHHHHHHH
Confidence             456677777777764

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.29  E-value=1.1e-06  Score=90.23  Aligned_cols=320  Identities=12%  Similarity=0.082  Sum_probs=172.3

Q ss_pred             cCChHHHHHHHHHHHHhCCCC------chhHHHHHHHHHHhcCChHHHHHHHHhCCCCCh-------hhHHHHHHHHHhc
Q 036290          360 LLDLDLGLQLQCLALHCGFLD------EENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNI-------TTWNELLSGYCFN  426 (796)
Q Consensus       360 ~~~~~~a~~~~~~~~~~g~~~------~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~  426 (796)
                      .|+..+....+.++.+. +.|      -...|..+.+.|-+.|+++.|+.+|++..+-+-       .+|......-.+.
T Consensus       360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh  438 (835)
T KOG2047|consen  360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH  438 (835)
T ss_pred             cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence            45566666667666653 122      233567888889999999999999988775322       2455555556667


Q ss_pred             CCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHH
Q 036290          427 CCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFS  506 (796)
Q Consensus       427 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  506 (796)
                      .+++.|+++++.....   |....    +..+ ..+..-++          .+.-+..++..+++.--..|-++....++
T Consensus       439 ~~~~~Al~lm~~A~~v---P~~~~----~~~y-d~~~pvQ~----------rlhrSlkiWs~y~DleEs~gtfestk~vY  500 (835)
T KOG2047|consen  439 ENFEAALKLMRRATHV---PTNPE----LEYY-DNSEPVQA----------RLHRSLKIWSMYADLEESLGTFESTKAVY  500 (835)
T ss_pred             hhHHHHHHHHHhhhcC---CCchh----hhhh-cCCCcHHH----------HHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence            7788888877766542   22111    0000 00000000          00112233444444445555566666666


Q ss_pred             hcCCCCCHhhHHHHH---HHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhc---cCchHHHHHHHHHHHHhC
Q 036290          507 NGAERLDMASWGAMM---SALVHQGHNHEAVTIFHSLVEAGEKPDE-YILGTILNSCAA---IGAYQRTKSIHPFVIKLG  579 (796)
Q Consensus       507 ~~~~~~~~~~~~~li---~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~---~~~~~~a~~~~~~~~~~~  579 (796)
                      +++.+.-..|-..++   .-+-.+.-++++.+++++-...--.|+. ..|+..+.-+.+   ....+.|..+|++..+ |
T Consensus       501 driidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~  579 (835)
T KOG2047|consen  501 DRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-G  579 (835)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-c
Confidence            655542222111111   1122334455666666553322112332 234444333322   2356667777776666 4


Q ss_pred             CCCchh--HHHHHHHHHHhcCCHHHHHHHHhccCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 036290          580 FNTEVY--VASAVIDAYAKCGDIKGARMAFDQSFNS----NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQAT  653 (796)
Q Consensus       580 ~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t  653 (796)
                      .+|...  .|-.....--+-|-...|..+++.....    .-...||+.|.--+..=-......+|++..+  .-|+...
T Consensus       580 Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe--~Lp~~~~  657 (835)
T KOG2047|consen  580 CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE--SLPDSKA  657 (835)
T ss_pred             CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH--hCChHHH
Confidence            443322  1111122223346666777777544333    1345677777655544445566778888888  4677666


Q ss_pred             HHHHH---HHHhccCCHHHHHHHHHHhHhhcCCCCC--chHHHHHHHHHHhcCCh
Q 036290          654 FVSVM---SACSHKGLVDKGCLLFKSMDSQYGMQPS--PDCYGCLVDMLSRNGYL  703 (796)
Q Consensus       654 ~~~ll---~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~  703 (796)
                      -...+   ..-++.|..+.|..++....+-  +.|.  +..|.+.=.--.+.|+-
T Consensus       658 r~mclrFAdlEtklGEidRARaIya~~sq~--~dPr~~~~fW~twk~FEvrHGne  710 (835)
T KOG2047|consen  658 REMCLRFADLETKLGEIDRARAIYAHGSQI--CDPRVTTEFWDTWKEFEVRHGNE  710 (835)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHhhhhc--CCCcCChHHHHHHHHHHHhcCCH
Confidence            55444   3446789999999998776533  4444  66777777777888883

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=1.2e-07  Score=93.38  Aligned_cols=367  Identities=9%  Similarity=0.016  Sum_probs=243.9

Q ss_pred             cccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCChhhHH-HHHHHHHhcCCchHHHHHH
Q 036290          358 GKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWN-ELLSGYCFNCCDADVLKTF  436 (796)
Q Consensus       358 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~  436 (796)
                      ...|..+.|...|...... .+-.-..|   +....-..+.+.+..+....+..+...-. -+..++-...+.+++.+-.
T Consensus       175 k~~~~~s~A~~sfv~~v~~-~P~~W~AW---leL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~  250 (559)
T KOG1155|consen  175 KELGLLSLAIDSFVEVVNR-YPWFWSAW---LELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKK  250 (559)
T ss_pred             HhhchHHHHHHHHHHHHhc-CCcchHHH---HHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456666666666554432 11222222   22222223344444333333322221111 2234555556778888888


Q ss_pred             HHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCC---CchhHhHHHHHHHhcCCcch-HHHHHhcCCCC
Q 036290          437 CNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSS---CGYICSSLIKSYVNFGQLDN-SFEFSNGAERL  512 (796)
Q Consensus       437 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~  512 (796)
                      ......|.+-+...-+....+.-...++++|+.+|+++.+.. |-   |..+|..++-.-....++.- |..++ .+.+=
T Consensus       251 e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PYRl~dmdlySN~LYv~~~~skLs~LA~~v~-~idKy  328 (559)
T KOG1155|consen  251 ERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-NIDKY  328 (559)
T ss_pred             HHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcchhHHHHhHHHHHHhhhHHHHHHHHHHH-HhccC
Confidence            888887776666655555566667789999999999998874 32   44555554433322222221 12221 22222


Q ss_pred             CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHH
Q 036290          513 DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPD-EYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVI  591 (796)
Q Consensus       513 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li  591 (796)
                      -+.|...+..-|.-.++.++|...|++..+.  .|. ...|+.+-.-|....+...|.+-++..++.++. |-..|-.|.
T Consensus       329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLG  405 (559)
T KOG1155|consen  329 RPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLG  405 (559)
T ss_pred             CccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhh
Confidence            3455666667777788999999999998765  444 455666667899999999999999999887765 888999999


Q ss_pred             HHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 036290          592 DAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDK  669 (796)
Q Consensus       592 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~  669 (796)
                      ++|.-.+...-|+-+|++...-  .|...|.+|..+|.+.++.++|.+.|.+....| +.+...+..|...+-+.++.++
T Consensus       406 QaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~e  484 (559)
T KOG1155|consen  406 QAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNE  484 (559)
T ss_pred             HHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHH
Confidence            9999999999999999776653  599999999999999999999999999999865 3466789999999999999999


Q ss_pred             HHHHHHHhHhhc---C-CCCC-chHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 036290          670 GCLLFKSMDSQY---G-MQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEK  744 (796)
Q Consensus       670 A~~~~~~~~~~~---~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  744 (796)
                      |.+.|++.....   | +.|. .....-|..-+.+.+++++|..+.....             .  -.-..++|..+++.
T Consensus       485 Aa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~-------------~--~~~e~eeak~LlRe  549 (559)
T KOG1155|consen  485 AAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL-------------K--GETECEEAKALLRE  549 (559)
T ss_pred             HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh-------------c--CCchHHHHHHHHHH
Confidence            999998877532   1 2332 3333345666777888888776655441             0  12245677777777


Q ss_pred             HHccC
Q 036290          745 LLLLL  749 (796)
Q Consensus       745 ~~~~~  749 (796)
                      +.+..
T Consensus       550 ir~~~  554 (559)
T KOG1155|consen  550 IRKIQ  554 (559)
T ss_pred             HHHhc
Confidence            76643

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=4.8e-09  Score=105.56  Aligned_cols=278  Identities=13%  Similarity=0.027  Sum_probs=192.5

Q ss_pred             CCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCC---HhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036290          480 SSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLD---MASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTIL  556 (796)
Q Consensus       480 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll  556 (796)
                      ..++.+.....+-+...+++.+..++++...+.|   ...+..-|.++...|+..+-..+=.+|.+. .+-...+|-++-
T Consensus       241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg  319 (611)
T KOG1173|consen  241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG  319 (611)
T ss_pred             hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence            4455566666677777778888888877776643   334555566777777777777777777665 244556777777


Q ss_pred             HHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHH
Q 036290          557 NSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSE  634 (796)
Q Consensus       557 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~  634 (796)
                      -.|...|+..+|++.|......... -...|-.....|.-.|..|+|...+..+-+-  +....+--+.--|.+.++++.
T Consensus       320 ~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL  398 (611)
T KOG1173|consen  320 CYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL  398 (611)
T ss_pred             HHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence            7777778888888888877664433 3456777777888888888887766332221  122222233445777888888


Q ss_pred             HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhc-CCCC----CchHHHHHHHHHHhcCChHHHHH
Q 036290          635 AMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQY-GMQP----SPDCYGCLVDMLSRNGYLEDAKH  708 (796)
Q Consensus       635 A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~  708 (796)
                      |.+.|.+...  +.| |+..++-+.-.....+.+.+|..+|+...... .+.+    -..+++.|+.++.+.+++++|+.
T Consensus       399 Ae~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~  476 (611)
T KOG1173|consen  399 AEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID  476 (611)
T ss_pred             HHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence            8888888777  677 66666666555566778888888888776211 1111    24557788888888888888888


Q ss_pred             HHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290          709 VIEIM-PFQ-PSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK  761 (796)
Q Consensus       709 ~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  761 (796)
                      .+++. ... .+..++.++.-.+...|+++.|...+.+++-++|++..+-.+|..
T Consensus       477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~  531 (611)
T KOG1173|consen  477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL  531 (611)
T ss_pred             HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence            88877 333 366788888888888888999999999988888888776666654

>PF13041 PPR_2: PPR repeat family

Probab=99.27  E-value=7.6e-12  Score=86.87  Aligned_cols=50  Identities=20%  Similarity=0.518  Sum_probs=47.8

Q ss_pred             CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhc
Q 036290          108 RNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVS  157 (796)
Q Consensus       108 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~  157 (796)
                      ||+++||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            78999999999999999999999999999999999999999999999875

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.24  E-value=6.9e-08  Score=95.54  Aligned_cols=401  Identities=12%  Similarity=0.035  Sum_probs=239.9

Q ss_pred             HHHHHHHHhCCCccHHHHHHHHHHHcCCCCC-cchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCch-hHHHHHHHHHH
Q 036290          316 NTLFGGFSENKNPGQTASLFHKFILSGSRPN-HVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEE-NVTSSLIYMFC  393 (796)
Q Consensus       316 ~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~ll~~~~  393 (796)
                      -..-.-|.++|.+++|++.|.+..+.  .|| +..|...-.+|...|+++++.+--....+.  .|+. -.+..-..++-
T Consensus       119 K~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E  194 (606)
T KOG0547|consen  119 KTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHE  194 (606)
T ss_pred             HhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHH
Confidence            34455688889999999999988764  677 667777777778888888877655554443  3332 12233344555


Q ss_pred             hcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHH---------HHhc--CCcccHHHHHHHHHHhcccC
Q 036290          394 RCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCN---------IWES--GVEVNGCTFFYVVETCCRSE  462 (796)
Q Consensus       394 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~---------m~~~--g~~p~~~t~~~ll~~~~~~~  462 (796)
                      ..|++++|+.-         ++-.++..++....-.--+.+++++         |...  .+-|+.....+....+...-
T Consensus       195 ~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~  265 (606)
T KOG0547|consen  195 QLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP  265 (606)
T ss_pred             hhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc
Confidence            56666665532         1222233333222222222222222         1111  13355444444443332210


Q ss_pred             cHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhc--C---CcchHHHHHhcCC-------C---CCHhh------HHHHH
Q 036290          463 NQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNF--G---QLDNSFEFSNGAE-------R---LDMAS------WGAMM  521 (796)
Q Consensus       463 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g---~~~~A~~~~~~~~-------~---~~~~~------~~~li  521 (796)
                                  ......+.......+..++...  +   .+..|...+.+-.       .   .|...      .....
T Consensus       266 ------------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~g  333 (606)
T KOG0547|consen  266 ------------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRG  333 (606)
T ss_pred             ------------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhh
Confidence                        0000011111111121111110  0   1222222221110       0   11111      11111


Q ss_pred             HHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 036290          522 SALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIK  601 (796)
Q Consensus       522 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  601 (796)
                      .-+.-.|+.-.|..-|+..+.....++. .|.-+-..|....+.++..+.|+...+.+.. ++.+|..-.+++.-.++++
T Consensus       334 tF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e  411 (606)
T KOG0547|consen  334 TFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYE  411 (606)
T ss_pred             hhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHH
Confidence            1223458888888889888776433332 2666777788888899999999988887766 6667777788888888999


Q ss_pred             HHHHHHhccCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHh
Q 036290          602 GARMAFDQSFNSN--DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDS  679 (796)
Q Consensus       602 ~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~  679 (796)
                      +|..-|++.+.-.  ++..|-.+.-+.-+.+++++++..|++.++. ++-....|+.....+..+++++.|.+.|+... 
T Consensus       412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai-  489 (606)
T KOG0547|consen  412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI-  489 (606)
T ss_pred             HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH-
Confidence            9999997766653  5566666666666788999999999998874 33366778888888999999999999998887 


Q ss_pred             hcCCCCC---------chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 036290          680 QYGMQPS---------PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP-TVYRSLLSGCRIHGNKELGEWASEKLLLL  748 (796)
Q Consensus       680 ~~~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  748 (796)
                        .+.|+         +.+-..++-.-. .+++..|..++++. .+.|.- ..|.+|.....+.|+.++|+++|++...+
T Consensus       490 --~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l  566 (606)
T KOG0547|consen  490 --ELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL  566 (606)
T ss_pred             --hhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence              34444         222222222222 37888999999888 566643 67888888888999999999999988764

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.24  E-value=1.1e-09  Score=112.44  Aligned_cols=194  Identities=13%  Similarity=0.169  Sum_probs=121.3

Q ss_pred             CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHH--
Q 036290          513 DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKP-DEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASA--  589 (796)
Q Consensus       513 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--  589 (796)
                      .+.+|.++..+|.-+++.+.|++.|++..+.  .| ...+|+.+-.-+.....+|.|...|+....    .++..|++  
T Consensus       420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~~rhYnAwY  493 (638)
T KOG1126|consen  420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----VDPRHYNAWY  493 (638)
T ss_pred             CcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc----CCchhhHHHH
Confidence            4556666666666666666666666665543  33 344555444445555556666665554433    24444444  


Q ss_pred             -HHHHHHhcCCHHHHHHHHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC
Q 036290          590 -VIDAYAKCGDIKGARMAFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKG  665 (796)
Q Consensus       590 -li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g  665 (796)
                       +.-.|.+.++++.|+-.|+.++.- | +.+....+...+.+.|+.++|+.++++...  ++| |...--.-...+...+
T Consensus       494 GlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~~~~~il~~~~  571 (638)
T KOG1126|consen  494 GLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKYHRASILFSLG  571 (638)
T ss_pred             hhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHHHHHHHHHhhc
Confidence             345577777777777777655554 2 666666677777777778888888877776  555 4444444455566677


Q ss_pred             CHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 036290          666 LVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP  717 (796)
Q Consensus       666 ~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p  717 (796)
                      ++++|+..+++++   .+.|+ ...+..++..|.+.|+.+.|+.-|--+ ...|
T Consensus       572 ~~~eal~~LEeLk---~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp  622 (638)
T KOG1126|consen  572 RYVEALQELEELK---ELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP  622 (638)
T ss_pred             chHHHHHHHHHHH---HhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence            7888888887777   45666 566667777777778777777666544 3444

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=6e-08  Score=97.92  Aligned_cols=267  Identities=13%  Similarity=0.104  Sum_probs=155.4

Q ss_pred             HHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCC
Q 036290          419 LLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQ  498 (796)
Q Consensus       419 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  498 (796)
                      -.+-+...+++.+..++.....+. .++....+..=|.++...|+...-..+-..+++.- |..+.+|-++.-.|...|+
T Consensus       250 ~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k  327 (611)
T KOG1173|consen  250 KADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGK  327 (611)
T ss_pred             HHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcC
Confidence            334444455555555555555543 12233333333334444555444444444444433 5567777778777888888


Q ss_pred             cchHHHHHhcCCCCC---HhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCchHHHHHHHHH
Q 036290          499 LDNSFEFSNGAERLD---MASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDE-YILGTILNSCAAIGAYQRTKSIHPF  574 (796)
Q Consensus       499 ~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~  574 (796)
                      .++|.+.|.+....|   ...|-.+...|+-.|..+.|+..+...-+.  -|.. .-+--+---|.+.++.+.|.++|.+
T Consensus       328 ~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~  405 (611)
T KOG1173|consen  328 YSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ  405 (611)
T ss_pred             cHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence            888888887766533   346888888888888899988888776443  1111 1122223346667778888888777


Q ss_pred             HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036290          575 VIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS---------NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLA  645 (796)
Q Consensus       575 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  645 (796)
                      .....+. |+.+.+-+.-.....+.+.+|..+|+..+..         ....+++.|..+|.+.+.+++|+..+++... 
T Consensus       406 A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~-  483 (611)
T KOG1173|consen  406 ALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL-  483 (611)
T ss_pred             HHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH-
Confidence            6654433 5556666655556667777777777443311         0233455556666666666666666666655 


Q ss_pred             CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHH
Q 036290          646 NLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVD  695 (796)
Q Consensus       646 g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~  695 (796)
                       ..| |..++.++.-.+...|+++.|.+.|.+..   .+.|+-.+-..++.
T Consensus       484 -l~~k~~~~~asig~iy~llgnld~Aid~fhKaL---~l~p~n~~~~~lL~  530 (611)
T KOG1173|consen  484 -LSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL---ALKPDNIFISELLK  530 (611)
T ss_pred             -cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH---hcCCccHHHHHHHH
Confidence             334 55556555555666666666666666555   55666444443433

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.21  E-value=2.8e-06  Score=88.15  Aligned_cols=276  Identities=13%  Similarity=0.139  Sum_probs=128.3

Q ss_pred             CChhHHHHHhcccCCCCcch--HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHH
Q 036290           93 GYFGWGLRVFDEMAERNLVS--WTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCF  170 (796)
Q Consensus        93 g~~~~A~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~  170 (796)
                      ..|..|+.+++.++.+++.+  |..+...|+..|+++.|.++|.+.         ..++-.+.-|.+.|.+..|..+-++
T Consensus       746 kew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e  816 (1636)
T KOG3616|consen  746 KEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEE  816 (1636)
T ss_pred             hhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHH
Confidence            44444444444444433322  444444555555555555554432         1233344445555555544444322


Q ss_pred             HHHhcCCCChhHhhHHHHHHHccCChhHHHHHhhccCCCCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHH
Q 036290          171 ALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFI  250 (796)
Q Consensus       171 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~  250 (796)
                      .  .|.+.....|-+-..-+-+.|++.+|++++-.+..|+.     -|..|-+.|..++.+++.++-....+   ..|..
T Consensus       817 ~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l---~dt~~  886 (1636)
T KOG3616|consen  817 C--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHL---HDTHK  886 (1636)
T ss_pred             h--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChhhh---hHHHH
Confidence            2  23334444444444444455555555555544444442     34555555555555555554321111   22333


Q ss_pred             HHHHhhccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccH
Q 036290          251 NALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQ  330 (796)
Q Consensus       251 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  330 (796)
                      .+-.-+-..|+++.|+.-|-...         -|.+-+++|-.++.+++|.++-+.-...|..-  .+.-.+++.-.-+.
T Consensus       887 ~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriaktegg~n~~k--~v~flwaksiggda  955 (1636)
T KOG3616|consen  887 HFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTEGGANAEK--HVAFLWAKSIGGDA  955 (1636)
T ss_pred             HHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhccccccHHH--HHHHHHHHhhCcHH
Confidence            34444555666666665443322         24566677777777777777765433222211  11122233333345


Q ss_pred             HHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 036290          331 TASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSY  410 (796)
Q Consensus       331 a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~  410 (796)
                      |.+++++.   |      ....-+...+..+.++-|..+-+...+... |  .+.-.+...+-..|++++|-+-+-+..+
T Consensus       956 avkllnk~---g------ll~~~id~a~d~~afd~afdlari~~k~k~-~--~vhlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen  956 AVKLLNKH---G------LLEAAIDFAADNCAFDFAFDLARIAAKDKM-G--EVHLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred             HHHHHHhh---h------hHHHHhhhhhcccchhhHHHHHHHhhhccC-c--cchhHHhhhhhhccchhhhhHhhHHHhh
Confidence            55555442   1      111223334455556666555544443321 1  1222333445566777777665554443

>PF13041 PPR_2: PPR repeat family

Probab=99.21  E-value=2.7e-11  Score=84.10  Aligned_cols=50  Identities=34%  Similarity=0.476  Sum_probs=46.5

Q ss_pred             CCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhcc
Q 036290          209 DDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSL  258 (796)
Q Consensus       209 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~  258 (796)
                      ||+.+||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            68899999999999999999999999999999999999999999998874

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.20  E-value=3.5e-08  Score=95.53  Aligned_cols=291  Identities=14%  Similarity=0.072  Sum_probs=169.6

Q ss_pred             CCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 036290          325 NKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSV  404 (796)
Q Consensus       325 ~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~  404 (796)
                      .|++.+|..+..+-.+.+-.|- ..|..-..+.-..|+.+.+-+++.+..+..-.++..+.-+........|+.+.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            5777777777777666554442 234445555666777777777777776654456666666777777788888877776


Q ss_pred             HHhCC---CCChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCC
Q 036290          405 FDNVS---YKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSS  481 (796)
Q Consensus       405 ~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  481 (796)
                      ++.+.   ..++........+|.+.|++.....++..|.+.|.--+...-..                            
T Consensus       176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l----------------------------  227 (400)
T COG3071         176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL----------------------------  227 (400)
T ss_pred             HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH----------------------------
Confidence            65544   35677788888888888888888888888888775444321100                            


Q ss_pred             CchhHhHHHHHHHhcCCcchHHHHHhcCCC---CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036290          482 CGYICSSLIKSYVNFGQLDNSFEFSNGAER---LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNS  558 (796)
Q Consensus       482 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~  558 (796)
                      ...+++.+++-....+..+.-...++..+.   .++..-.+++.-+.+.|+.++|.++..+..+++..|+.    ..+-.
T Consensus       228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~  303 (400)
T COG3071         228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIP  303 (400)
T ss_pred             HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHh
Confidence            001122222222222222222223333322   23334444455555555555555555555554444431    11112


Q ss_pred             HhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHH
Q 036290          559 CAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAM  636 (796)
Q Consensus       559 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~  636 (796)
                      +.+.                                   ++.+.-++..+..++.  .++..+.+|...|.+.+.|.+|.
T Consensus       304 ~l~~-----------------------------------~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~  348 (400)
T COG3071         304 RLRP-----------------------------------GDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKAS  348 (400)
T ss_pred             hcCC-----------------------------------CCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHH
Confidence            2233                                   3333333333232222  24466777777778888888888


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC
Q 036290          637 EIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS  686 (796)
Q Consensus       637 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~  686 (796)
                      +.|+...+  ..|+..+|+.+.+++.+.|+.++|.+..++.... -..|+
T Consensus       349 ~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~-~~~~~  395 (400)
T COG3071         349 EALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL-TRQPN  395 (400)
T ss_pred             HHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH-hcCCC
Confidence            88887666  6678888888888888888888888877776632 34444

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.19  E-value=1.6e-05  Score=85.80  Aligned_cols=643  Identities=12%  Similarity=0.116  Sum_probs=327.2

Q ss_pred             hhhHHHHHHHHccCChhHHHHHhcccCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHh
Q 036290           80 FLQNNLIAMYSKCGYFGWGLRVFDEMAE---RNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCV  156 (796)
Q Consensus        80 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~  156 (796)
                      ..|-.-.+.+...|++++|.++--.-|+   ++..|-+..=.+=...|.+.--+..|..+...| +.|..---.+.+.-.
T Consensus       361 ~Lfv~rFneLfaqG~Y~eAAkvAAsSPrgILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG-kLNk~ETLEL~RpVL  439 (1666)
T KOG0985|consen  361 NLFVRRFNELFAQGEYEEAAKVAASSPRGILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG-KLNKYETLELCRPVL  439 (1666)
T ss_pred             HHHHHHHHHHHhCccHHHHHHHHHhCchhhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc-cccHHHHHHHHHHHH
Confidence            3444445556677999999988877766   566666666666667788888888888888887 445443333344444


Q ss_pred             ccCChhHHHHHHHHH-----HHhc--CCC-Ch----h------HhhHHHHHHHccCChhHHHHHhhccCCCCceeHHHHH
Q 036290          157 SMGASEFGYSIHCFA-----LKIR--IEK-NP----F------VGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMI  218 (796)
Q Consensus       157 ~~~~~~~a~~~~~~~-----~~~g--~~~-~~----~------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li  218 (796)
                      .+|+.+....++.+=     .+.|  +.| |.    .      +-+.++..|+.+|+++++.-...+.-.  ..-|-.+|
T Consensus       440 ~Q~RkqLlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kKvGy--TPdymflL  517 (1666)
T KOG0985|consen  440 QQGRKQLLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQFKKIILYAKKVGY--TPDYMFLL  517 (1666)
T ss_pred             hhhHHHHHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHHHcCC--CccHHHHH
Confidence            455544443333221     1233  111 11    1      123345555555555555544443321  12255566


Q ss_pred             HHHHhCCCchHHHHHHHHHHHC-CCCCCHhhHHH--------------HHHhhccCCCchHH---HHHHHHHHHhcCC--
Q 036290          219 GGYAHCGYGFEALNVVSSMLFE-GITMDKYTFIN--------------ALQGCSLVADFDIG---RQIHGLIIRSEVE--  278 (796)
Q Consensus       219 ~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~--------------ll~~~~~~~~~~~a---~~~~~~~~~~~~~--  278 (796)
                      +...+ -.++++.++...|.+. +...|......              +|.++ +...++++   .++++.-...++.  
T Consensus       518 q~l~r-~sPD~~~qFa~~l~Q~~~~~~die~I~DlFme~N~iQq~TSFLLdaL-K~~~Pd~g~LQTrLLE~NL~~aPqVA  595 (1666)
T KOG0985|consen  518 QQLKR-SSPDQALQFAMMLVQDEEPLADIEQIVDLFMELNLIQQCTSFLLDAL-KLNSPDEGHLQTRLLEMNLVHAPQVA  595 (1666)
T ss_pred             HHHHc-cChhHHHHHHHHhhccCCCcccHHHHHHHHHHHHhhhhhHHHHHHHh-cCCChhhhhHHHHHHHHHhccchHHH
Confidence            66655 5777777777777663 32223322211              11111 11122211   1222222222110  


Q ss_pred             --------CChHHHHHHHHhhhcCCCHHHHHHHHhhcCC--CCcchHH----HHHHHHHhCCCccHHHHHHHHHHHcCCC
Q 036290          279 --------CSISIVNALIDMYIKSSGMDYAFKVFERMAD--KDVISWN----TLFGGFSENKNPGQTASLFHKFILSGSR  344 (796)
Q Consensus       279 --------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~----~li~~~~~~~~~~~a~~l~~~m~~~g~~  344 (796)
                              -+..-+..+...|.++|-+..|++.+..+.+  +.++.-+    --+..|.-.-.++.+++.++.|...+++
T Consensus       596 DAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~Nir  675 (1666)
T KOG0985|consen  596 DAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIR  675 (1666)
T ss_pred             HHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence                    0112245556777788888888877776653  1111111    1123344455678889999999888888


Q ss_pred             CCcchHHHHHHHhcccCChHHHHHHHHHHHH-----------hCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCC---
Q 036290          345 PNHVTFSILLRQCGKLLDLDLGLQLQCLALH-----------CGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSY---  410 (796)
Q Consensus       345 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-----------~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---  410 (796)
                      .+..+...+..-|...-..+...++|+....           -++.-|..+.-..|.+.|+.|++.+.+++.++-.-   
T Consensus       676 qNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~Ydp  755 (1666)
T KOG0985|consen  676 QNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDP  755 (1666)
T ss_pred             hhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCH
Confidence            8877766666655555455555556555443           23456677777889999999999998888765431   


Q ss_pred             ----------------C------------ChhhH------HHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHH----
Q 036290          411 ----------------K------------NITTW------NELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFF----  452 (796)
Q Consensus       411 ----------------~------------~~~~~------~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~----  452 (796)
                                      |            |.+.|      ...|..|.+.=++...-.+...+.+..+  +....-    
T Consensus       756 ErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC--~E~~ik~Li~  833 (1666)
T KOG0985|consen  756 ERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDC--SEDFIKNLIL  833 (1666)
T ss_pred             HHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCC--cHHHHHHHHH
Confidence                            1            11111      1233444444333333333333322211  111111    


Q ss_pred             ---------HHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHH----------HHHhcCCCCC
Q 036290          453 ---------YVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSF----------EFSNGAERLD  513 (796)
Q Consensus       453 ---------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~----------~~~~~~~~~~  513 (796)
                               -+..-+-+.+++......++..+..| .-++.++|+|...|...++-.+-.          .+=+-..++|
T Consensus       834 ~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRD  912 (1666)
T KOG0985|consen  834 SVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRD  912 (1666)
T ss_pred             HHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccC
Confidence                     12222334455555556666666677 567788888887776554322110          0000000000


Q ss_pred             H-------------------hhHHHHH----HHHHHcCChhH---H--------HHHHHHHHHcCC--CCCHHHHHHHHH
Q 036290          514 M-------------------ASWGAMM----SALVHQGHNHE---A--------VTIFHSLVEAGE--KPDEYILGTILN  557 (796)
Q Consensus       514 ~-------------------~~~~~li----~~~~~~~~~~~---A--------~~~~~~m~~~g~--~p~~~t~~~ll~  557 (796)
                      +                   ..-|+|.    +-+.+..+.+-   .        .++.+...+.++  ..|+......+.
T Consensus       913 P~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVk  992 (1666)
T KOG0985|consen  913 PHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVK  992 (1666)
T ss_pred             CceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHH
Confidence            0                   0001111    11111111111   1        112222222221  123333333444


Q ss_pred             HHhccCchHHHHHHHHHHHHhC--CCCchhHHHHH---------------------------HHHHHhcCCHHHHHHHHh
Q 036290          558 SCAAIGAYQRTKSIHPFVIKLG--FNTEVYVASAV---------------------------IDAYAKCGDIKGARMAFD  608 (796)
Q Consensus       558 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l---------------------------i~~~~~~g~~~~A~~~~~  608 (796)
                      ++...+-..+-.++++.+.-.+  +.-+...-+.|                           .......+-+++|..+|+
T Consensus       993 AfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifk 1072 (1666)
T KOG0985|consen  993 AFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFK 1072 (1666)
T ss_pred             HHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHH
Confidence            4444444444444444333211  10011111111                           111112223344444442


Q ss_pred             -------------ccCCC-----------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 036290          609 -------------QSFNS-----------NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHK  664 (796)
Q Consensus       609 -------------~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~  664 (796)
                                   +.+.+           ..+..|..+..+-.+.|...+|.+-|-+.      -|...|.-+++.+.+.
T Consensus      1073 kf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~ 1146 (1666)
T KOG0985|consen 1073 KFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRT 1146 (1666)
T ss_pred             HhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhc
Confidence                         11110           25567888999888888888888777332      2556788999999999


Q ss_pred             CCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 036290          665 GLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASE  743 (796)
Q Consensus       665 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  743 (796)
                      |.|++-.+++..+.++ .-.|...  ..|+-+|++.++..+-.+++.    .|+.........-|...|.++.|+-++.
T Consensus      1147 ~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1147 GKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred             CcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH
Confidence            9999999999877755 5555544  458889999998888766653    3444444444444555555554444443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.18  E-value=1.1e-07  Score=96.63  Aligned_cols=350  Identities=13%  Similarity=0.089  Sum_probs=199.6

Q ss_pred             hcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCccc-HHHHHHHHHHhcccCcHHHHHHHHH
Q 036290          394 RCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVN-GCTFFYVVETCCRSENQQMVGQIHG  472 (796)
Q Consensus       394 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~  472 (796)
                      +.++.++|...++.....+..+...-...+.+.|++++|+++|+.+.+++..-- ...-..++.+-...       . ..
T Consensus        91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------~-~~  162 (652)
T KOG2376|consen   91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------Q-VQ  162 (652)
T ss_pred             HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------h-HH
Confidence            667788888877755555555666666777888888888888888866653321 11112222211110       0 00


Q ss_pred             HHHHhCCCCCchhHhHH---HHHHHhcCCcchHHHHHhcCC--------CCC-----Hh-----hHHHHHHHHHHcCChh
Q 036290          473 AIIKTGFSSCGYICSSL---IKSYVNFGQLDNSFEFSNGAE--------RLD-----MA-----SWGAMMSALVHQGHNH  531 (796)
Q Consensus       473 ~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~--------~~~-----~~-----~~~~li~~~~~~~~~~  531 (796)
                      .+......| ..+|..+   ...+...|++.+|++++....        +.|     ..     .--.+.-++...|+.+
T Consensus       163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~  241 (652)
T KOG2376|consen  163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA  241 (652)
T ss_pred             HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence            111112122 2244433   344567788888888877661        111     11     1223455667789999


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHH---HHhccCchHH--HHHHHHHH-----------HHhCCCCchhHHHHHHHHHH
Q 036290          532 EAVTIFHSLVEAGEKPDEYILGTILN---SCAAIGAYQR--TKSIHPFV-----------IKLGFNTEVYVASAVIDAYA  595 (796)
Q Consensus       532 ~A~~~~~~m~~~g~~p~~~t~~~ll~---~~~~~~~~~~--a~~~~~~~-----------~~~~~~~~~~~~~~li~~~~  595 (796)
                      +|.+++....... .+|........+   +...-.++-.  +...++..           ......-....-+.++.+| 
T Consensus       242 ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~-  319 (652)
T KOG2376|consen  242 EASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF-  319 (652)
T ss_pred             HHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            9999999998775 555543333222   2222111111  11111111           1110011112222333333 


Q ss_pred             hcCCHHHHHHHHhccCCCC-ChhHHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHH
Q 036290          596 KCGDIKGARMAFDQSFNSN-DVIVYNTLIMAYAH--HGLVSEAMEIFDKMKLANLQPSQ--ATFVSVMSACSHKGLVDKG  670 (796)
Q Consensus       596 ~~g~~~~A~~~~~~~~~~~-~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~A  670 (796)
                       .+..+.+.++- ..++.. ....+.+++....+  ......+.+++...-+  -.|..  ......+......|+++.|
T Consensus       320 -tnk~~q~r~~~-a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A  395 (652)
T KOG2376|consen  320 -TNKMDQVRELS-ASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVA  395 (652)
T ss_pred             -hhhHHHHHHHH-HhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHH
Confidence             34555666665 333332 23444555544322  2346778888877776  34533  4455556677889999999


Q ss_pred             HHHHH--------HhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcC
Q 036290          671 CLLFK--------SMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM--------PFQPS-PTVYRSLLSGCRIHG  733 (796)
Q Consensus       671 ~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~g  733 (796)
                      ++++.        .+.   .+.-.+.+...++..+.+.++.+.|.+++.+.        ...+. ..+|..++..-.++|
T Consensus       396 ~~il~~~~~~~~ss~~---~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G  472 (652)
T KOG2376|consen  396 LEILSLFLESWKSSIL---EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG  472 (652)
T ss_pred             HHHHHHHhhhhhhhhh---hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence            99998        444   33444667777889999988888787777765        11221 234555555567789


Q ss_pred             ChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290          734 NKELGEWASEKLLLLLPKNDAAHVLLSK  761 (796)
Q Consensus       734 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~  761 (796)
                      +-++|...++++++.+|++....+-|..
T Consensus       473 ~~~ea~s~leel~k~n~~d~~~l~~lV~  500 (652)
T KOG2376|consen  473 NEEEASSLLEELVKFNPNDTDLLVQLVT  500 (652)
T ss_pred             chHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence            9999999999999999999888776555

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.17  E-value=6e-08  Score=90.98  Aligned_cols=281  Identities=11%  Similarity=0.089  Sum_probs=159.2

Q ss_pred             cCChHHHHHHHHhCCCCChhhH---HHHHHHHHhcCCchHHHHHHHHHHhcCCcccH---HHHHHHHHHhcccCcHHHHH
Q 036290          395 CGAVEMAHSVFDNVSYKNITTW---NELLSGYCFNCCDADVLKTFCNIWESGVEVNG---CTFFYVVETCCRSENQQMVG  468 (796)
Q Consensus       395 ~g~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~a~  468 (796)
                      +.+.++|.+.|-+|.+.|..++   -+|-+.|-+.|..+.|+++-+.+.++.--+..   ...-.+-.-|...|-+|.|+
T Consensus        48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE  127 (389)
T COG2956          48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE  127 (389)
T ss_pred             hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            5788999999999998666554   45778899999999999999998875322221   23334556677889999999


Q ss_pred             HHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 036290          469 QIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPD  548 (796)
Q Consensus       469 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~  548 (796)
                      .+|..+.+.+ ..-......|+..|-...+|++|++                               +-.++...+-++.
T Consensus       128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId-------------------------------~A~~L~k~~~q~~  175 (389)
T COG2956         128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAID-------------------------------VAERLVKLGGQTY  175 (389)
T ss_pred             HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHH-------------------------------HHHHHHHcCCccc
Confidence            9999998755 2233344445555555555555544                               4444443332222


Q ss_pred             H----HHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C--ChhHHHH
Q 036290          549 E----YILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N--DVIVYNT  621 (796)
Q Consensus       549 ~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~--~~~~~~~  621 (796)
                      .    ..|+-+........+++.|...++...+.+.+ .+..--.+.+.+...|+++.|.+.++..... |  -..+...
T Consensus       176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~  254 (389)
T COG2956         176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM  254 (389)
T ss_pred             hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence            1    12333333334444555555555555444333 3333344555566666666666666222222 1  1234455


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhc-
Q 036290          622 LIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRN-  700 (796)
Q Consensus       622 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-  700 (796)
                      |..+|.+.|+.++....+.++.+.  .+....-..+..--....-.+.|..++.+-.   .-+|+...+..+++..... 
T Consensus       255 L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql---~r~Pt~~gf~rl~~~~l~da  329 (389)
T COG2956         255 LYECYAQLGKPAEGLNFLRRAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQL---RRKPTMRGFHRLMDYHLADA  329 (389)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHH---hhCCcHHHHHHHHHhhhccc
Confidence            666677777777777777666663  3333333333333233333445555444444   2357766666666655432 


Q ss_pred             --CChHHHHHHHHhC
Q 036290          701 --GYLEDAKHVIEIM  713 (796)
Q Consensus       701 --g~~~~A~~~~~~~  713 (796)
                        |...+-..++++|
T Consensus       330 eeg~~k~sL~~lr~m  344 (389)
T COG2956         330 EEGRAKESLDLLRDM  344 (389)
T ss_pred             cccchhhhHHHHHHH
Confidence              3344444444444

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.16  E-value=3e-08  Score=98.00  Aligned_cols=212  Identities=14%  Similarity=0.128  Sum_probs=148.9

Q ss_pred             HhcCCcchHHHHHhcCCCC---CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHH
Q 036290          494 VNFGQLDNSFEFSNGAERL---DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKS  570 (796)
Q Consensus       494 ~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~  570 (796)
                      .-.|+.-.|.+-|+.....   +...|--+...|...++.++-...|++..+.. +-++.+|..--+...-.++++.|..
T Consensus       337 fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~a  415 (606)
T KOG0547|consen  337 FLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIA  415 (606)
T ss_pred             hhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHH
Confidence            3456666666666655542   22236666677788888888888888876654 3344555555555555667777777


Q ss_pred             HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 036290          571 IHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQ  648 (796)
Q Consensus       571 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  648 (796)
                      =|+..++.... +...|-.+.-+..+.++++++...|++...+ | .+..|+.....+...++++.|.+.|+..++  +.
T Consensus       416 DF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--LE  492 (606)
T KOG0547|consen  416 DFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--LE  492 (606)
T ss_pred             HHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--hc
Confidence            77777765544 5556666666677888889999998666655 4 667888888889999999999999998887  55


Q ss_pred             CC-------HHHH--HHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          649 PS-------QATF--VSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       649 p~-------~~t~--~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      |+       ..++  ..++.. .=.+++..|.+++.+..   .+.|. ...|..|.......|+.++|+++|++.
T Consensus       493 ~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~---e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks  563 (606)
T KOG0547|consen  493 PREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAI---ELDPKCEQAYETLAQFELQRGKIDEAIELFEKS  563 (606)
T ss_pred             cccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHH---ccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            54       1111  111111 12378899999999888   67777 677888999999999999999999886

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.14  E-value=1.3e-08  Score=99.51  Aligned_cols=163  Identities=18%  Similarity=0.206  Sum_probs=103.6

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 036290          585 YVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSAC  661 (796)
Q Consensus       585 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~  661 (796)
                      ..+..+...+...|++++|.+.+++.+..  .+...+..+...+...|++++|.+.+++..+....| ....+..+...+
T Consensus        66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~  145 (234)
T TIGR02521        66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA  145 (234)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence            33444445555555555555555444332  234455566666677777777777777776532222 334455566677


Q ss_pred             hccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHH
Q 036290          662 SHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PF-QPSPTVYRSLLSGCRIHGNKELG  738 (796)
Q Consensus       662 ~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A  738 (796)
                      ...|++++|...+++...   ..|+ ...+..+...+...|++++|.+.+++. .. ..+...+..++..+...|+.++|
T Consensus       146 ~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  222 (234)
T TIGR02521       146 LKAGDFDKAEKYLTRALQ---IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAA  222 (234)
T ss_pred             HHcCCHHHHHHHHHHHHH---hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHH
Confidence            778888888888887763   3444 556777778888888888888887776 22 23445566666777777888888


Q ss_pred             HHHHHHHHccCC
Q 036290          739 EWASEKLLLLLP  750 (796)
Q Consensus       739 ~~~~~~~~~~~p  750 (796)
                      ..+.+.+.+..|
T Consensus       223 ~~~~~~~~~~~~  234 (234)
T TIGR02521       223 QRYGAQLQKLFP  234 (234)
T ss_pred             HHHHHHHHhhCc
Confidence            888777766544

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.07  E-value=9.2e-09  Score=96.15  Aligned_cols=236  Identities=13%  Similarity=0.059  Sum_probs=165.6

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 036290          519 AMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCG  598 (796)
Q Consensus       519 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  598 (796)
                      .+..+|.+.|.+.+|.+.|+.-..+  .|-+.||..|-.+|.+..+...|..++.+-.+. ++-++....-+.+.+...+
T Consensus       228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~  304 (478)
T KOG1129|consen  228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAME  304 (478)
T ss_pred             HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHH
Confidence            3444444445555555444444433  344444444555555555555555544443332 1113333344455666667


Q ss_pred             CHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 036290          599 DIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKS  676 (796)
Q Consensus       599 ~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~  676 (796)
                      +.++|.++++..++.  .++...-++...|.-.++.+-|+.+++++.+.|+. +...|..+.-+|.-.+++|-++.-|++
T Consensus       305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R  383 (478)
T KOG1129|consen  305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR  383 (478)
T ss_pred             hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence            788888888665554  36666777778888899999999999999998875 667788888899999999999999999


Q ss_pred             hHhhcCCCCC--chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 036290          677 MDSQYGMQPS--PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKN  752 (796)
Q Consensus       677 ~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  752 (796)
                      ..+- .-.|+  ...|..|.......|++.-|.+-|+-. ...| ....++.|.-.-.+.|+.++|+.++..+....|+-
T Consensus       384 Alst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m  462 (478)
T KOG1129|consen  384 ALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM  462 (478)
T ss_pred             HHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence            8855 45566  677888999999999999999999876 3334 45788999888889999999999999999999975


Q ss_pred             CcceEEe
Q 036290          753 DAAHVLL  759 (796)
Q Consensus       753 ~~~~~~l  759 (796)
                      ......|
T Consensus       463 ~E~~~Nl  469 (478)
T KOG1129|consen  463 AEVTTNL  469 (478)
T ss_pred             cccccce
Confidence            5544433

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.06  E-value=1e-05  Score=84.23  Aligned_cols=461  Identities=14%  Similarity=0.117  Sum_probs=252.7

Q ss_pred             cCChhHHHHHhcccCC-CCcc-hHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChhHHHHHHH
Q 036290           92 CGYFGWGLRVFDEMAE-RNLV-SWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHC  169 (796)
Q Consensus        92 ~g~~~~A~~~~~~~~~-~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~  169 (796)
                      .|+++.|...++.... |+.. .|-.+-..-..+|+..-|.+.|                      +..|++..++.+|+
T Consensus       457 ~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercf----------------------aai~dvak~r~lhd  514 (1636)
T KOG3616|consen  457 DGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCF----------------------AAIGDVAKARFLHD  514 (1636)
T ss_pred             cCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHH----------------------HHHHHHHHHHHHHH
Confidence            3566666655554322 3332 3444444444445444444333                      33455555555554


Q ss_pred             HHH-------HhcC-CCChhHhhHHHHHHHccCChhHHHHHhhccCCCCceeHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 036290          170 FAL-------KIRI-EKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEG  241 (796)
Q Consensus       170 ~~~-------~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  241 (796)
                      ...       +-|- ..+.+-..+++.++.+  ++.+|+.+|-+-.     .-..-|..|....++++|+.+-+..   |
T Consensus       515 ~~eiadeas~~~ggdgt~fykvra~lail~k--kfk~ae~ifleqn-----~te~aigmy~~lhkwde~i~lae~~---~  584 (1636)
T KOG3616|consen  515 ILEIADEASIEIGGDGTDFYKVRAMLAILEK--KFKEAEMIFLEQN-----ATEEAIGMYQELHKWDEAIALAEAK---G  584 (1636)
T ss_pred             HHHHHHHHhHhhCCCCchHHHHHHHHHHHHh--hhhHHHHHHHhcc-----cHHHHHHHHHHHHhHHHHHHHHHhc---C
Confidence            332       1222 2233334444444443  5667777763321     1123445555556666666654432   2


Q ss_pred             CCCCHhhHHHHHHhhccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcC--CCCcchHHHHH
Q 036290          242 ITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMA--DKDVISWNTLF  319 (796)
Q Consensus       242 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li  319 (796)
                      .+.=...-.+.++++...|+-+.|-++-         .+..---+.|..|.+.|....|.+....-.  ..|......+.
T Consensus       585 ~p~~eklk~sy~q~l~dt~qd~ka~elk---------~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia  655 (1636)
T KOG3616|consen  585 HPALEKLKRSYLQALMDTGQDEKAAELK---------ESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIA  655 (1636)
T ss_pred             ChHHHHHHHHHHHHHHhcCchhhhhhhc---------cccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHH
Confidence            2222222234455555555554443331         111122456788888888877766543221  23555666667


Q ss_pred             HHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCh
Q 036290          320 GGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVT-SSLIYMFCRCGAV  398 (796)
Q Consensus       320 ~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~ll~~~~~~g~~  398 (796)
                      .++.+..-+++|-++|+++..         +...+.++.+..-+.+|.++-+..    ++...+.. ..--..+...|++
T Consensus       656 ~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q~  722 (1636)
T KOG3616|consen  656 AALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQL  722 (1636)
T ss_pred             HHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhH
Confidence            777777777888888877642         122333333333344444332221    11111111 1222334445666


Q ss_pred             HHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhC
Q 036290          399 EMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTG  478 (796)
Q Consensus       399 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~  478 (796)
                      +.|..-|-+..     ..-..+.+......|.+|+.+++.++...  .-..-|..+..-|+..|+++.|+++|-+.    
T Consensus       723 daainhfiea~-----~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~----  791 (1636)
T KOG3616|consen  723 DAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA----  791 (1636)
T ss_pred             HHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc----
Confidence            66665554322     12233455667788888888888887643  22334666777788888888888887643    


Q ss_pred             CCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCC--HhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036290          479 FSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLD--MASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTIL  556 (796)
Q Consensus       479 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll  556 (796)
                           ..++--|.+|.+.|+|++|.++-.+...|.  ...|-+-..-+-++|++.+|.+++-.+.    .|+.     .|
T Consensus       792 -----~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----ai  857 (1636)
T KOG3616|consen  792 -----DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AI  857 (1636)
T ss_pred             -----chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HH
Confidence                 345667888889999998888877766653  3445555666777888888887775542    4542     45


Q ss_pred             HHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHH
Q 036290          557 NSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAM  636 (796)
Q Consensus       557 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  636 (796)
                      ..|-+.|..+...++...-..   ..-..+...+..-|...|++..|..-|-+      ..-|.+-+..|...+-|++|.
T Consensus       858 qmydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~fle------a~d~kaavnmyk~s~lw~day  928 (1636)
T KOG3616|consen  858 QMYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLE------AGDFKAAVNMYKASELWEDAY  928 (1636)
T ss_pred             HHHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHHHHHhccChhHHHHHHHh------hhhHHHHHHHhhhhhhHHHHH
Confidence            667777777777666554322   11223444566667778888888776622      223566666777777777776


Q ss_pred             HHHH
Q 036290          637 EIFD  640 (796)
Q Consensus       637 ~~~~  640 (796)
                      ++-+
T Consensus       929 riak  932 (1636)
T KOG3616|consen  929 RIAK  932 (1636)
T ss_pred             HHHh
Confidence            5543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.03  E-value=7.8e-08  Score=93.90  Aligned_cols=194  Identities=10%  Similarity=0.074  Sum_probs=146.1

Q ss_pred             HhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 036290          514 MASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDA  593 (796)
Q Consensus       514 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  593 (796)
                      ...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++.|.+.++...+.... +...+..+...
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~  108 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence            3456666777777888888888888776542 334556666777778888888888888877776543 45567777888


Q ss_pred             HHhcCCHHHHHHHHhccCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHH
Q 036290          594 YAKCGDIKGARMAFDQSFNSN----DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVD  668 (796)
Q Consensus       594 ~~~~g~~~~A~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~  668 (796)
                      +...|++++|.+.+++.+..+    ....+..+...+...|++++|...+++..+  ..| +...+..+...+...|+++
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~  186 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ--IDPQRPESLLELAELYYLRGQYK  186 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCChHHHHHHHHHHHHcCCHH
Confidence            888888888888887666532    345667778888899999999999999887  445 4567778888888999999


Q ss_pred             HHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          669 KGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       669 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      +|...+++....  ...++..+..++..+...|+.++|..+.+.+
T Consensus       187 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  229 (234)
T TIGR02521       187 DARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQL  229 (234)
T ss_pred             HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            999999988744  2334666777888888899999998887765

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.03  E-value=2.3e-07  Score=96.82  Aligned_cols=201  Identities=15%  Similarity=0.146  Sum_probs=129.1

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHc---CCCCCH----HHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHH
Q 036290          519 AMMSALVHQGHNHEAVTIFHSLVEA---GEKPDE----YILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVI  591 (796)
Q Consensus       519 ~li~~~~~~~~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li  591 (796)
                      .+...|...+++.+|..+|+++...   ..-++.    .+++.|-.+|.+.|++++|...++...+              
T Consensus       246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~--------------  311 (508)
T KOG1840|consen  246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALE--------------  311 (508)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH--------------
Confidence            3556777788888888888887432   111221    2333334445555555555555443322              


Q ss_pred             HHHHhcCCHHHHHHHHhccCC--CCCh-hHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHH
Q 036290          592 DAYAKCGDIKGARMAFDQSFN--SNDV-IVYNTLIMAYAHHGLVSEAMEIFDKMKLA---NLQPS----QATFVSVMSAC  661 (796)
Q Consensus       592 ~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~----~~t~~~ll~~~  661 (796)
                                    +++....  .+.+ ..++.++..++..+++++|..+++...+.   -..++    ..+++.|...|
T Consensus       312 --------------I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~  377 (508)
T KOG1840|consen  312 --------------IYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELY  377 (508)
T ss_pred             --------------HHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence                          1111000  0122 12444555666677777777766655431   11222    35688899999


Q ss_pred             hccCCHHHHHHHHHHhHhhc-----CCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCCH-HHHHHHH
Q 036290          662 SHKGLVDKGCLLFKSMDSQY-----GMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM--------PFQPSP-TVYRSLL  726 (796)
Q Consensus       662 ~~~g~~~~A~~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~~~l~  726 (796)
                      ...|++++|.++++++.+..     +..+. ...++.|...|.+.+++.+|.++|.+.        +..|+. .+|..|.
T Consensus       378 ~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~  457 (508)
T KOG1840|consen  378 LKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLA  457 (508)
T ss_pred             HHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence            99999999999999887542     12222 566788899999999999999998876        233444 6789999


Q ss_pred             HHHHhcCChHHHHHHHHHHHc
Q 036290          727 SGCRIHGNKELGEWASEKLLL  747 (796)
Q Consensus       727 ~~~~~~g~~~~A~~~~~~~~~  747 (796)
                      ..|...|+++.|.++.+++..
T Consensus       458 ~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  458 ALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             HHHHHcccHHHHHHHHHHHHH
Confidence            999999999999999998884

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.02  E-value=2.2e-05  Score=83.03  Aligned_cols=469  Identities=10%  Similarity=0.024  Sum_probs=231.1

Q ss_pred             CCchhhHHHHH--HHHccCChhHHHHHhcccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHC-C--------CCCCc
Q 036290           77 NDIFLQNNLIA--MYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTN-G--------FMPNE  145 (796)
Q Consensus        77 ~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~--------~~p~~  145 (796)
                      -|..+-.++++  .|.-.|+.+.|.+..+-++.  -..|..|.+-|.+..+.+-|.-.+-.|... |        -.|+ 
T Consensus       724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-  800 (1416)
T KOG3617|consen  724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-  800 (1416)
T ss_pred             cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence            45566666665  56678999999887776643  357999999999988888888777777442 1        1122 


Q ss_pred             ccHHHHHHHHhccCChhHHHHHHHHHHHhcCCCChhHhhHHHHHHHccCChhHHHHHhhccCCCC-ceeHHHHHHHHHhC
Q 036290          146 FAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDD-VGCWNAMIGGYAHC  224 (796)
Q Consensus       146 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~  224 (796)
                      .+=..+.-.....|.+++|+.++.+-.+..         .|=+.|-..|.+++|.++-+.-.+-. ..||..-..-+-..
T Consensus       801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear  871 (1416)
T KOG3617|consen  801 EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR  871 (1416)
T ss_pred             chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence            111111122236788888888888877643         34456777899999988876543321 22455555555667


Q ss_pred             CCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHH
Q 036290          225 GYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVF  304 (796)
Q Consensus       225 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  304 (796)
                      ++.+.|++.|++-..    |-...+..|.      .++...++....      ..|...|.---..+-..|+++.|+.++
T Consensus       872 ~Di~~AleyyEK~~~----hafev~rmL~------e~p~~~e~Yv~~------~~d~~L~~WWgqYlES~GemdaAl~~Y  935 (1416)
T KOG3617|consen  872 RDIEAALEYYEKAGV----HAFEVFRMLK------EYPKQIEQYVRR------KRDESLYSWWGQYLESVGEMDAALSFY  935 (1416)
T ss_pred             ccHHHHHHHHHhcCC----hHHHHHHHHH------hChHHHHHHHHh------ccchHHHHHHHHHHhcccchHHHHHHH
Confidence            788888888876421    1111111111      011111111111      112233333333334456666666666


Q ss_pred             hhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhC--CCC--
Q 036290          305 ERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCG--FLD--  380 (796)
Q Consensus       305 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~--  380 (796)
                      ....+     |-.+++..|-.|+.++|-++-++-      -|....-.+-+.|-..|++.+|...|-..+...  +..  
T Consensus       936 ~~A~D-----~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcK 1004 (1416)
T KOG3617|consen  936 SSAKD-----YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCK 1004 (1416)
T ss_pred             HHhhh-----hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55332     445555555566666665555441      233333445555555566666655554443210  000  


Q ss_pred             chhHHHHHHHHH--HhcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHH--------HHhcCC--cccH
Q 036290          381 EENVTSSLIYMF--CRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCN--------IWESGV--EVNG  448 (796)
Q Consensus       381 ~~~~~~~ll~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--------m~~~g~--~p~~  448 (796)
                      ....-..|....  ....+.-.|-+.|++..    .-....+..|.+.|.+.+|+++--+        +...++  ..|+
T Consensus      1005 End~~d~L~nlal~s~~~d~v~aArYyEe~g----~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp 1080 (1416)
T KOG3617|consen 1005 ENDMKDRLANLALMSGGSDLVSAARYYEELG----GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDP 1080 (1416)
T ss_pred             hcCHHHHHHHHHhhcCchhHHHHHHHHHHcc----hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCH
Confidence            000000111111  11122233344444433    1122234456667777776665322        122222  2344


Q ss_pred             HHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCC-----CCH----hhHHH
Q 036290          449 CTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAER-----LDM----ASWGA  519 (796)
Q Consensus       449 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~  519 (796)
                      ...+..-.-++...+++.|..++....+..         --+. +|+..+..-..++-+.|..     ++.    .....
T Consensus      1081 ~ll~RcadFF~~~~qyekAV~lL~~ar~~~---------~Alq-lC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeq 1150 (1416)
T KOG3617|consen 1081 KLLRRCADFFENNQQYEKAVNLLCLAREFS---------GALQ-LCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQ 1150 (1416)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---------HHHH-HHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHH
Confidence            455555555566666666666665544321         1111 2222233333333333321     222    23445


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHH-------------HHHHHHhCCCCchhH
Q 036290          520 MMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSI-------------HPFVIKLGFNTEVYV  586 (796)
Q Consensus       520 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~-------------~~~~~~~~~~~~~~~  586 (796)
                      +...|.+.|.+..|-+-|.+.-++         ...++++.+.|+.++..-+             -+.+.......++.+
T Consensus      1151 vae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~ 1221 (1416)
T KOG3617|consen 1151 VAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQT 1221 (1416)
T ss_pred             HHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHH
Confidence            566677777777776666543211         1234555555554432111             112223344455555


Q ss_pred             HHHHHHHHHhcCCHHHHHHHH
Q 036290          587 ASAVIDAYAKCGDIKGARMAF  607 (796)
Q Consensus       587 ~~~li~~~~~~g~~~~A~~~~  607 (796)
                      ...++..|.+..-++.--.+|
T Consensus      1222 mK~I~tFYTKgqafd~LanFY 1242 (1416)
T KOG3617|consen 1222 MKDIETFYTKGQAFDHLANFY 1242 (1416)
T ss_pred             HhhhHhhhhcchhHHHHHHHH
Confidence            555555555554444444444

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.01  E-value=8.4e-08  Score=85.94  Aligned_cols=195  Identities=15%  Similarity=0.112  Sum_probs=144.0

Q ss_pred             HHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHH
Q 036290          557 NSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSE  634 (796)
Q Consensus       557 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~  634 (796)
                      -.|...|+...|..-+++..+.... +..++..+...|.+.|+.+.|.+.|+..+..  .+-...|.....+|..|++++
T Consensus        43 l~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~e  121 (250)
T COG3063          43 LGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEE  121 (250)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHH
Confidence            3445555555555555555554433 5566677777778888888888888766654  366677777788888888888


Q ss_pred             HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHh
Q 036290          635 AMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEI  712 (796)
Q Consensus       635 A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~  712 (796)
                      |...|++....-.-| -..||..+..+..+.|+.+.|..+|++..   ...|+ +.....+.+...+.|++..|..+++.
T Consensus       122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL---~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~  198 (250)
T COG3063         122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRAL---ELDPQFPPALLELARLHYKAGDYAPARLYLER  198 (250)
T ss_pred             HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHH---HhCcCCChHHHHHHHHHHhcccchHHHHHHHH
Confidence            888888887643223 34578777777788899999999998887   55677 77788888889999999999988888


Q ss_pred             C--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcc
Q 036290          713 M--PFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAA  755 (796)
Q Consensus       713 ~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  755 (796)
                      .  ...++.......|..-...||...+-+.-..+.+..|.....
T Consensus       199 ~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~  243 (250)
T COG3063         199 YQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY  243 (250)
T ss_pred             HHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence            7  344677777777777788899888888888888888876654

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.98  E-value=1.5e-05  Score=86.22  Aligned_cols=355  Identities=11%  Similarity=0.047  Sum_probs=197.5

Q ss_pred             HHHHHHHhCC---CCChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Q 036290          400 MAHSVFDNVS---YKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIK  476 (796)
Q Consensus       400 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~  476 (796)
                      .|...+....   ..+...||.|--. ...|.+.-+...|-+-... .+....+|..+--.+....+++.|...+.....
T Consensus       801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS  878 (1238)
T KOG1127|consen  801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS  878 (1238)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence            4444444433   2455666665444 4445555555554443332 233445666666667777888888888877766


Q ss_pred             hCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCC-----C---CCHhhHHHHHHHHHHcCChhHHHHHHHHHHH------
Q 036290          477 TGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAE-----R---LDMASWGAMMSALVHQGHNHEAVTIFHSLVE------  542 (796)
Q Consensus       477 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~------  542 (796)
                      .. |.+...+--........|+.-++..+|..-.     +   ++..-|-....-...+|+.++-+....++-.      
T Consensus       879 Ld-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~  957 (1238)
T KOG1127|consen  879 LD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALS  957 (1238)
T ss_pred             cC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHH
Confidence            54 4444444444444556666666666665421     1   2333333333333455555544333332211      


Q ss_pred             ---cCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHH-hCCCCchhHHH----HHHHHHHhcCCHHHHHHHHhccCCCC
Q 036290          543 ---AGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIK-LGFNTEVYVAS----AVIDAYAKCGDIKGARMAFDQSFNSN  614 (796)
Q Consensus       543 ---~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~  614 (796)
                         .|.+-+...|..........+.+..+.+...+++. .....+...|+    ...+.++..|.++.|..-+...-..-
T Consensus       958 ~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~ev 1037 (1238)
T KOG1127|consen  958 YYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEV 1037 (1238)
T ss_pred             HHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhH
Confidence               13344556666666666666666666666555443 11122333333    34566777888888877762222222


Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CH-HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHH
Q 036290          615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP---SQ-ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCY  690 (796)
Q Consensus       615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~-~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~  690 (796)
                      +...-..-+.. .-.|+++++++.|++...  +.-   +. .....++.+....+.-+.|...+-+....  -.|+....
T Consensus      1038 dEdi~gt~l~l-Ffkndf~~sl~~fe~aLs--is~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l--s~~~~~sl 1112 (1238)
T KOG1127|consen 1038 DEDIRGTDLTL-FFKNDFFSSLEFFEQALS--ISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL--SKVQASSL 1112 (1238)
T ss_pred             HHHHhhhhHHH-HHHhHHHHHHHHHHHHhh--hcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh--CccchhhH
Confidence            33333333333 335789999999999876  332   22 23444555666778888888877777633  34555555


Q ss_pred             HHHHHHHHhcCChHHHHHHHHhC---C----CCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHccCCCCCcceEEecCh
Q 036290          691 GCLVDMLSRNGYLEDAKHVIEIM---P----FQPSPTVYRSLLSG-CRIHGNKELGEWASEKLLLLLPKNDAAHVLLSKR  762 (796)
Q Consensus       691 ~~l~~~~~~~g~~~~A~~~~~~~---~----~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  762 (796)
                      ..|.-.+.-..+-.......++.   .    +.-++.   .++.. +.+.|+-...++.+++.+-.+|.++..|.+|++|
T Consensus      1113 l~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~---ll~e~i~~~~~r~~~vk~~~qr~~h~~P~~~~~WslL~vr 1189 (1238)
T KOG1127|consen 1113 LPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPG---LLKELIYALQGRSVAVKKQIQRAVHSNPGDPALWSLLSVR 1189 (1238)
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChh---HHHHHHHHHhhhhHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            55555444433333333333333   1    111111   12222 5678999999999999999999999999999874


Q ss_pred             hhH
Q 036290          763 KRQ  765 (796)
Q Consensus       763 ~~~  765 (796)
                      .+.
T Consensus      1190 ya~ 1192 (1238)
T KOG1127|consen 1190 YAQ 1192 (1238)
T ss_pred             HHH
Confidence            333

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.95  E-value=3.9e-05  Score=78.58  Aligned_cols=366  Identities=12%  Similarity=0.118  Sum_probs=185.3

Q ss_pred             cCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCc-chHHHHHHHhcccCChHHHHHHHH
Q 036290          293 KSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNH-VTFSILLRQCGKLLDLDLGLQLQC  371 (796)
Q Consensus       293 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~  371 (796)
                      +.+..++|+..++...+.+..+...-...+.+.|++++|+++|+.+.+++..--. ..-..++.+-..       ... .
T Consensus        91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-------l~~-~  162 (652)
T KOG2376|consen   91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-------LQV-Q  162 (652)
T ss_pred             HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-------hhH-H
Confidence            5677777777777555545445555566677788888888888888666432211 111111111100       000 0


Q ss_pred             HHHHhCCCCchhHH---HHHHHHHHhcCChHHHHHHHHhC--------CCCC-----hh-----hHHHHHHHHHhcCCch
Q 036290          372 LALHCGFLDEENVT---SSLIYMFCRCGAVEMAHSVFDNV--------SYKN-----IT-----TWNELLSGYCFNCCDA  430 (796)
Q Consensus       372 ~~~~~g~~~~~~~~---~~ll~~~~~~g~~~~A~~~~~~~--------~~~~-----~~-----~~~~li~~~~~~g~~~  430 (796)
                      .+......| ..+|   -.....++..|++.+|+++++..        .+.|     +.     .--.+.-.+-..|+.+
T Consensus       163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~  241 (652)
T KOG2376|consen  163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA  241 (652)
T ss_pred             HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence            122222222 2223   23344566778888888888766        1111     11     1223444566689999


Q ss_pred             HHHHHHHHHHhcCCcccHHH---HHHHHHHhcccCcHHH--HHHHHHHH-----------HHhCCCCCchhHhHHHHHHH
Q 036290          431 DVLKTFCNIWESGVEVNGCT---FFYVVETCCRSENQQM--VGQIHGAI-----------IKTGFSSCGYICSSLIKSYV  494 (796)
Q Consensus       431 ~a~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~~~~~~--a~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~  494 (796)
                      +|..++....... .+|...   +..=|.+.....++..  +...++..           ....-.-...--+.++..| 
T Consensus       242 ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~-  319 (652)
T KOG2376|consen  242 EASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF-  319 (652)
T ss_pred             HHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            9999998888764 233322   2111222222222111  11111111           0000000011112233333 


Q ss_pred             hcCCcchHHHHHhcCCCCC-HhhHHHHHHHHH--HcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCchHHHH
Q 036290          495 NFGQLDNSFEFSNGAERLD-MASWGAMMSALV--HQGHNHEAVTIFHSLVEAGEKPDE--YILGTILNSCAAIGAYQRTK  569 (796)
Q Consensus       495 ~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~~~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~  569 (796)
                       .+..+.+.++........ ...+..++....  +...+.++.+++...-+.  .|..  ...-..+......|+++.|.
T Consensus       320 -tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~  396 (652)
T KOG2376|consen  320 -TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVAL  396 (652)
T ss_pred             -hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHH
Confidence             344555666665555422 233334443322  223466777777766554  3333  34444555667788888888


Q ss_pred             HHHH--------HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-------CC--ChhHHHHHHHHHHhcCCh
Q 036290          570 SIHP--------FVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFN-------SN--DVIVYNTLIMAYAHHGLV  632 (796)
Q Consensus       570 ~~~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~--~~~~~~~li~~~~~~g~~  632 (796)
                      +++.        .+.+.+.  .+.+..+++..+.+.++-+.|..++.+.+.       ..  -..++.-+...-.+.|+-
T Consensus       397 ~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~  474 (652)
T KOG2376|consen  397 EILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNE  474 (652)
T ss_pred             HHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCch
Confidence            8887        3333333  345566677777777766555555533332       11  122333344444566778


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 036290          633 SEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKS  676 (796)
Q Consensus       633 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~  676 (796)
                      ++|..+++++.+.+ .+|..+...++.+|++.. .+.|..+-..
T Consensus       475 ~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d-~eka~~l~k~  516 (652)
T KOG2376|consen  475 EEASSLLEELVKFN-PNDTDLLVQLVTAYARLD-PEKAESLSKK  516 (652)
T ss_pred             HHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC-HHHHHHHhhc
Confidence            88888888877731 236667777777777653 6666655443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.95  E-value=1.5e-05  Score=82.41  Aligned_cols=388  Identities=11%  Similarity=0.040  Sum_probs=180.0

Q ss_pred             HHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHH
Q 036290          322 FSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMA  401 (796)
Q Consensus       322 ~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A  401 (796)
                      +...|+.++|.+..+.-.... .-+.++|..+--......++++|.+.|....+.+ +.|..++..+.-.-++.++++..
T Consensus        51 L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~  128 (700)
T KOG1156|consen   51 LNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGY  128 (700)
T ss_pred             hhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhH
Confidence            344456666666555544322 1123344444334444555666666666555543 33445555444444555555544


Q ss_pred             HHHHHhCCC---CChhhHHHHHHHHHhcCCchHHHHHHHHHHhcC-CcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHh
Q 036290          402 HSVFDNVSY---KNITTWNELLSGYCFNCCDADVLKTFCNIWESG-VEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKT  477 (796)
Q Consensus       402 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~  477 (796)
                      ........+   .....|..+..++.-.|+...|..++++..+.. -.|+...|.....-+.+                 
T Consensus       129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~-----------------  191 (700)
T KOG1156|consen  129 LETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQ-----------------  191 (700)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH-----------------
Confidence            444333332   233345555555555555555555555554433 13343333322211111                 


Q ss_pred             CCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCC--CCHhhH-HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 036290          478 GFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAER--LDMASW-GAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGT  554 (796)
Q Consensus       478 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~  554 (796)
                                  .....+.|..+.|.+.+.....  -|-..+ ..-..-+.+.++.++|..++..+...  .||..-|..
T Consensus       192 ------------n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~  257 (700)
T KOG1156|consen  192 ------------NQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYE  257 (700)
T ss_pred             ------------HHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHH
Confidence                        1122344445555544444332  111111 12233445556666666666666554  455555544


Q ss_pred             HHHHHh-cc-CchHHHHHHHHHHHHhCCC---CchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhc
Q 036290          555 ILNSCA-AI-GAYQRTKSIHPFVIKLGFN---TEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHH  629 (796)
Q Consensus       555 ll~~~~-~~-~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~  629 (796)
                      .+..+. +. +..+....++....+.-..   |-....    .......-.+..-+++...+..+-+.++..+...|-..
T Consensus       258 ~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpl----svl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p  333 (700)
T KOG1156|consen  258 GLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPL----SVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDP  333 (700)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccH----HHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhch
Confidence            444333 12 2222222333333321111   100000    00000111122222333333333333333333333322


Q ss_pred             CChHHHHHHHHHHHH----CC----------CCCCHHH--HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHH
Q 036290          630 GLVSEAMEIFDKMKL----AN----------LQPSQAT--FVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGC  692 (796)
Q Consensus       630 g~~~~A~~~~~~m~~----~g----------~~p~~~t--~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~  692 (796)
                      ...+-..++.-.+..    .|          -+|....  +-.++..+-+.|+++.|..+++...   +..|+ ++.|..
T Consensus       334 ~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~  410 (700)
T KOG1156|consen  334 EKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLV  410 (700)
T ss_pred             hHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHH
Confidence            221111111111110    00          1344433  3445667777888888888888777   66777 677777


Q ss_pred             HHHHHHhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 036290          693 LVDMLSRNGYLEDAKHVIEIMP-F-QPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLL  749 (796)
Q Consensus       693 l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  749 (796)
                      -.+.+...|++++|..++++.. + .||..+-..-+.-..+.++.++|..+..+-.+..
T Consensus       411 KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~  469 (700)
T KOG1156|consen  411 KARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREG  469 (700)
T ss_pred             HHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence            7788888888888888888773 2 3444433344445567777888877776655543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.94  E-value=5.4e-06  Score=78.88  Aligned_cols=95  Identities=16%  Similarity=0.298  Sum_probs=52.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHhccCCCC---ChhHHHH-HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhc
Q 036290          589 AVIDAYAKCGDIKGARMAFDQSFNSN---DVIVYNT-LIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVM-SACSH  663 (796)
Q Consensus       589 ~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~  663 (796)
                      .+.++++..|.+.+|.++| -.+..|   |..+|.+ |.++|.+.++++.|+.++-++   +-+.+..+...+| +-|.+
T Consensus       398 N~AQAk~atgny~eaEelf-~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk  473 (557)
T KOG3785|consen  398 NLAQAKLATGNYVEAEELF-IRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYK  473 (557)
T ss_pred             HHHHHHHHhcChHHHHHHH-hhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHH
Confidence            3556666666666666666 333332   4444443 345666677776665544332   2222333333333 55666


Q ss_pred             cCCHHHHHHHHHHhHhhcCCCCCchHH
Q 036290          664 KGLVDKGCLLFKSMDSQYGMQPSPDCY  690 (796)
Q Consensus       664 ~g~~~~A~~~~~~~~~~~~~~p~~~~~  690 (796)
                      .+.+=-|-+.|+.+.   ...|+++.|
T Consensus       474 ~~eFyyaaKAFd~lE---~lDP~pEnW  497 (557)
T KOG3785|consen  474 ANEFYYAAKAFDELE---ILDPTPENW  497 (557)
T ss_pred             HHHHHHHHHhhhHHH---ccCCCcccc
Confidence            676666666676665   456666665

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.93  E-value=7.1e-06  Score=84.70  Aligned_cols=459  Identities=12%  Similarity=0.068  Sum_probs=243.0

Q ss_pred             cCChhHHHHHHHHHHHhcCCCChhHhhHHHHHHHccCChhHHHHHhhccCC---CCceeHHHHHHHHHhCCCchHHHHHH
Q 036290          158 MGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISS---DDVGCWNAMIGGYAHCGYGFEALNVV  234 (796)
Q Consensus       158 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~  234 (796)
                      .+....+..+.+.+.+ +.+-...+.....-.+...|+-++|......-..   .+.++|..+--.+....++++|++.|
T Consensus        20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy   98 (700)
T KOG1156|consen   20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY   98 (700)
T ss_pred             HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence            3444444444454444 2222222222222234455777777777665443   35667887777777778888888888


Q ss_pred             HHHHHCCCCCCHhhHHHHHHhhccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCC---CC
Q 036290          235 SSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMAD---KD  311 (796)
Q Consensus       235 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~  311 (796)
                      ......  .||..                                  .++.-|--.-++-|+++.....-....+   ..
T Consensus        99 ~nAl~~--~~dN~----------------------------------qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~  142 (700)
T KOG1156|consen   99 RNALKI--EKDNL----------------------------------QILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ  142 (700)
T ss_pred             HHHHhc--CCCcH----------------------------------HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Confidence            887653  23322                                  1122222222223333333322222221   24


Q ss_pred             cchHHHHHHHHHhCCCccHHHHHHHHHHHcCC-CCCcchHHHHHHH------hcccCChHHHHHHHHHHHHhCCCCchhH
Q 036290          312 VISWNTLFGGFSENKNPGQTASLFHKFILSGS-RPNHVTFSILLRQ------CGKLLDLDLGLQLQCLALHCGFLDEENV  384 (796)
Q Consensus       312 ~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~-~p~~~t~~~ll~~------~~~~~~~~~a~~~~~~~~~~g~~~~~~~  384 (796)
                      ...|..+..++.-.|+...|..++++..+... .|+...|......      ....|.++.|.+.+..-... +......
T Consensus       143 ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~  221 (700)
T KOG1156|consen  143 RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAF  221 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHH
Confidence            46788888888889999999999999877653 5666666544332      24566677776665543332 1112222


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhCCC--CChhhHHHHHHHHH-hcCCchHHH-HHHHHHHhcCCcccHHHHHHHHHHhcc
Q 036290          385 TSSLIYMFCRCGAVEMAHSVFDNVSY--KNITTWNELLSGYC-FNCCDADVL-KTFCNIWESGVEVNGCTFFYVVETCCR  460 (796)
Q Consensus       385 ~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~-~~g~~~~a~-~~~~~m~~~g~~p~~~t~~~ll~~~~~  460 (796)
                      -..-...+.+.+++++|..++..+..  ||...|...+..+. +-.+..+++ .+|....+. .+.....-..-++....
T Consensus       222 ~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~  300 (700)
T KOG1156|consen  222 EETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNG  300 (700)
T ss_pred             hhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCc
Confidence            23445667788899999999888875  55555555444333 333333444 555555442 11111111111222223


Q ss_pred             cCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHH
Q 036290          461 SENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSL  540 (796)
Q Consensus       461 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m  540 (796)
                      ..-.+...+++..+.+.|+++-   +..+...|-.-...+               ....++..|...-.........+.-
T Consensus       301 eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~---------------~le~Lvt~y~~~L~~~~~f~~~D~~  362 (700)
T KOG1156|consen  301 EELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVA---------------FLEKLVTSYQHSLSGTGMFNFLDDG  362 (700)
T ss_pred             chhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhH---------------HHHHHHHHHHhhcccccCCCccccc
Confidence            3334555566777777776653   233333322111110               1111112221111111000000000


Q ss_pred             HHcCCCCCHHH--HHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCCh
Q 036290          541 VEAGEKPDEYI--LGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFN--SNDV  616 (796)
Q Consensus       541 ~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~  616 (796)
                      .  .-+|....  +-.+...+-..|+++.|..+++..+.+-+. -+..|..-.+.+...|++++|...+++..+  .+|.
T Consensus       363 ~--~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT-liEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR  439 (700)
T KOG1156|consen  363 K--QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT-LIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADR  439 (700)
T ss_pred             c--cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhH
Confidence            0  01344433  334555666777777777777766654322 233455556777888888888888854333  3455


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--------HHHH--HHHHhccCCHHHHHHHHHHhH
Q 036290          617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQAT--------FVSV--MSACSHKGLVDKGCLLFKSMD  678 (796)
Q Consensus       617 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--------~~~l--l~~~~~~g~~~~A~~~~~~~~  678 (796)
                      ..-.--.....+.++.++|.++.......|.  +...        |-.+  ..+|.+.|++..|++-|..+.
T Consensus       440 ~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~  509 (700)
T KOG1156|consen  440 AINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE  509 (700)
T ss_pred             HHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence            5555666777788888888888888877764  2211        1111  246777888888877666655

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.93  E-value=1.8e-06  Score=91.59  Aligned_cols=284  Identities=11%  Similarity=0.055  Sum_probs=163.9

Q ss_pred             HHHHHhcCChHHHHHHHHhCCC--CCh-hhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhc----c-
Q 036290          389 IYMFCRCGAVEMAHSVFDNVSY--KNI-TTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCC----R-  460 (796)
Q Consensus       389 l~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~----~-  460 (796)
                      ...+...|++++|++.+++-..  .|. .........+.+.|+.++|..+++.+.+.  .|+...|-..+..+.    . 
T Consensus        11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~   88 (517)
T PF12569_consen   11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQL   88 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhccc
Confidence            3445677888888888876553  333 34555667777888888888888888774  466666555444443    1 


Q ss_pred             -cCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCCh-hHHHHHHH
Q 036290          461 -SENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHN-HEAVTIFH  538 (796)
Q Consensus       461 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~A~~~~~  538 (796)
                       ..+.+...++++.+.+.-  |......-+                               .-.+.....+ ..+...+.
T Consensus        89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl-------------------------------~L~~~~g~~F~~~~~~yl~  135 (517)
T PF12569_consen   89 SDEDVEKLLELYDELAEKY--PRSDAPRRL-------------------------------PLDFLEGDEFKERLDEYLR  135 (517)
T ss_pred             ccccHHHHHHHHHHHHHhC--ccccchhHh-------------------------------hcccCCHHHHHHHHHHHHH
Confidence             123444555555543332  111111111                               0001111111 23344455


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHh----C----------CCCchh--HHHHHHHHHHhcCCHHH
Q 036290          539 SLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKL----G----------FNTEVY--VASAVIDAYAKCGDIKG  602 (796)
Q Consensus       539 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~~--~~~~li~~~~~~g~~~~  602 (796)
                      .+..+|+++   +|..+-..|......+...+++......    +          -+|+..  ++..+...|...|++++
T Consensus       136 ~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~  212 (517)
T PF12569_consen  136 PQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEK  212 (517)
T ss_pred             HHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHH
Confidence            556666443   3344444444444444455555444321    1          123332  33455677778888888


Q ss_pred             HHHHHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHh
Q 036290          603 ARMAFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDS  679 (796)
Q Consensus       603 A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~  679 (796)
                      |+++++..+.. | .+..|..-.+.+.+.|++.+|.+.++..+.  +.+ |...-+-....+.+.|++++|.+++....+
T Consensus       213 Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~--LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr  290 (517)
T PF12569_consen  213 ALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARE--LDLADRYINSKCAKYLLRAGRIEEAEKTASLFTR  290 (517)
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcC
Confidence            88888767765 4 456777777888888888888888888877  555 555555556667778888888888877764


Q ss_pred             hcCCCCCchH--------HHHHHHHHHhcCChHHHHHHHHhC
Q 036290          680 QYGMQPSPDC--------YGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       680 ~~~~~p~~~~--------~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      . +..|....        ....+.+|.+.|++..|++.|...
T Consensus       291 ~-~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v  331 (517)
T PF12569_consen  291 E-DVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV  331 (517)
T ss_pred             C-CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            4 44343211        134466778888888887766554

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK12370 invasion protein regulator; Provisional

Probab=98.93  E-value=1.4e-07  Score=103.65  Aligned_cols=178  Identities=14%  Similarity=0.028  Sum_probs=108.0

Q ss_pred             CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHH
Q 036290          563 GAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIFD  640 (796)
Q Consensus       563 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~  640 (796)
                      ++++.|...++...+.+.. +...+..+...+...|++++|...+++.+.. | +...+..+...+...|++++|...++
T Consensus       318 ~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~  396 (553)
T PRK12370        318 NAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTIN  396 (553)
T ss_pred             hHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            3456666666666665544 4555666666677777777777777655543 2 45566667777777777777777777


Q ss_pred             HHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 036290          641 KMKLANLQPSQA-TFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP  717 (796)
Q Consensus       641 ~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p  717 (796)
                      +..+  +.|+.. .+..++..+...|++++|...++++...  ..|+ +..+..+..++...|+.++|.+.++++ ...|
T Consensus       397 ~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~  472 (553)
T PRK12370        397 ECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI  472 (553)
T ss_pred             HHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc
Confidence            7777  455432 2233344455567777777777776533  1343 444566677777777777777777766 3344


Q ss_pred             CHH-HHHHHHHHHHhcCChHHHHHHHHHHHc
Q 036290          718 SPT-VYRSLLSGCRIHGNKELGEWASEKLLL  747 (796)
Q Consensus       718 ~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~  747 (796)
                      +.. .++.+...+...|+  .|...++.+++
T Consensus       473 ~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~  501 (553)
T PRK12370        473 TGLIAVNLLYAEYCQNSE--RALPTIREFLE  501 (553)
T ss_pred             hhHHHHHHHHHHHhccHH--HHHHHHHHHHH
Confidence            433 33444444555553  56666665554

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.90  E-value=8.3e-05  Score=78.80  Aligned_cols=266  Identities=12%  Similarity=0.078  Sum_probs=139.3

Q ss_pred             hcccCCCCcchHHHHHH--HHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhc----
Q 036290          102 FDEMAERNLVSWTLIVS--AAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIR----  175 (796)
Q Consensus       102 ~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g----  175 (796)
                      |-....-|..|..+|+.  -|.--|+.+.|.+-.+-..      +...|..+.+-|.+..+++-|.-.+..|....    
T Consensus       718 Fvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRA  791 (1416)
T KOG3617|consen  718 FVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARA  791 (1416)
T ss_pred             hcCccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHH
Confidence            33344567778888876  3677889998888777664      44568888888888888888877776664321    


Q ss_pred             ----CCCChhHhhHHHHHHHccCChhHHHHHhhccCCCCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHH
Q 036290          176 ----IEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFIN  251 (796)
Q Consensus       176 ----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~  251 (796)
                          .+.+...-..+.-.-...|.+++|+.++.+-.+     |..|=..|-..|.+++|+++-+.-.+-.+   ..||..
T Consensus       792 lR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~  863 (1416)
T KOG3617|consen  792 LRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYN  863 (1416)
T ss_pred             HHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHH
Confidence                011111111111222344666666666655443     22333445556666666666554322111   223333


Q ss_pred             HHHhhccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHH
Q 036290          252 ALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQT  331 (796)
Q Consensus       252 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  331 (796)
                      -..-+-..+|.+.|.+.|+......+    .+.. ++     ..++....++.+++.++....|  ....+-..|+.+.|
T Consensus       864 yA~~Lear~Di~~AleyyEK~~~haf----ev~r-mL-----~e~p~~~e~Yv~~~~d~~L~~W--WgqYlES~GemdaA  931 (1416)
T KOG3617|consen  864 YAKYLEARRDIEAALEYYEKAGVHAF----EVFR-ML-----KEYPKQIEQYVRRKRDESLYSW--WGQYLESVGEMDAA  931 (1416)
T ss_pred             HHHHHHhhccHHHHHHHHHhcCChHH----HHHH-HH-----HhChHHHHHHHHhccchHHHHH--HHHHHhcccchHHH
Confidence            34444445555555555553211110    0111 11     1123334444444444433332  22233345677777


Q ss_pred             HHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          332 ASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNV  408 (796)
Q Consensus       332 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~  408 (796)
                      +.+|...+.         |-.+++..|-.|+.++|-++-++      .-|....-.|.+.|-..|++.+|..+|.+.
T Consensus       932 l~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA  993 (1416)
T KOG3617|consen  932 LSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRA  993 (1416)
T ss_pred             HHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            777766542         34555566666776666665443      223334445666666666666666666544

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.89  E-value=6.2e-07  Score=89.99  Aligned_cols=218  Identities=10%  Similarity=-0.039  Sum_probs=143.6

Q ss_pred             ChhHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 036290          529 HNHEAVTIFHSLVEAG-EKPD--EYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARM  605 (796)
Q Consensus       529 ~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  605 (796)
                      ..+.++.-+.++.... ..|+  ...|...-..+...|+.+.|...++...+.... +...++.+...+...|++++|..
T Consensus        41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence            4455566665555432 1222  233555555667777777777777777776543 56788888888899999999998


Q ss_pred             HHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCC
Q 036290          606 AFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGM  683 (796)
Q Consensus       606 ~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~  683 (796)
                      .|+..+.. | +...|..+...+...|++++|.+.+++..+  ..|+..........+...++.++|...+++....  .
T Consensus       120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~--~  195 (296)
T PRK11189        120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK--L  195 (296)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--C
Confidence            88776653 3 567788888888899999999999999988  5675432222222344567899999999765522  3


Q ss_pred             CCCchHHHHHHHHHHhcCChHHH--HHHHHhC-C----CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc
Q 036290          684 QPSPDCYGCLVDMLSRNGYLEDA--KHVIEIM-P----FQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDA  754 (796)
Q Consensus       684 ~p~~~~~~~l~~~~~~~g~~~~A--~~~~~~~-~----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  754 (796)
                      .|+...+ .+...  ..|+..++  .+.+.+. .    ..| ....|..+...+.+.|+.++|+..|+++++.+|.+..
T Consensus       196 ~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~  271 (296)
T PRK11189        196 DKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV  271 (296)
T ss_pred             CccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence            3433222 23333  34554433  3333322 1    112 2357888999999999999999999999999974433

>PRK12370 invasion protein regulator; Provisional

Probab=98.89  E-value=4e-07  Score=100.21  Aligned_cols=119  Identities=11%  Similarity=-0.013  Sum_probs=48.6

Q ss_pred             HHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-CC-hhHHHHHHHHHHhcCChHHH
Q 036290          558 SCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-ND-VIVYNTLIMAYAHHGLVSEA  635 (796)
Q Consensus       558 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~li~~~~~~g~~~~A  635 (796)
                      .+...|++++|...+++..+.++. +...+..+..++...|++++|...+++.+.. |+ ...+..++..+...|++++|
T Consensus       347 ~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA  425 (553)
T PRK12370        347 INTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDA  425 (553)
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHH
Confidence            333344444444444444433322 2233334444444444444444444333332 21 11122222233334555555


Q ss_pred             HHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 036290          636 MEIFDKMKLANLQPS-QATFVSVMSACSHKGLVDKGCLLFKSMD  678 (796)
Q Consensus       636 ~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~  678 (796)
                      ...+++..+.. .|+ ...+..+..++...|++++|...++++.
T Consensus       426 ~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~  468 (553)
T PRK12370        426 IRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIS  468 (553)
T ss_pred             HHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence            55555544321 232 2223334444445555555555555443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.87  E-value=8.9e-08  Score=89.71  Aligned_cols=227  Identities=10%  Similarity=0.078  Sum_probs=178.0

Q ss_pred             HhHHHHHHHhcCCcchHHHHHhcCCC--CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHH-HHHHHHhcc
Q 036290          486 CSSLIKSYVNFGQLDNSFEFSNGAER--LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILG-TILNSCAAI  562 (796)
Q Consensus       486 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~  562 (796)
                      -+-+.++|.+.|.+.+|.+.|+...+  |-+.||-.+-.+|.+..++..|+.++.+-.+.  .|-.+||. ...+.+...
T Consensus       226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam  303 (478)
T KOG1129|consen  226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM  303 (478)
T ss_pred             HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence            35678888899999999888887654  67788888888999999999999999887765  56555553 455567778


Q ss_pred             CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHH
Q 036290          563 GAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFD  640 (796)
Q Consensus       563 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~  640 (796)
                      ++.+.+.++++...+.... ++....++...|.-.++++-|+.+++..+.-  .+...|+.+.-+|.-.+++|-++..|+
T Consensus       304 ~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~  382 (478)
T KOG1129|consen  304 EQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ  382 (478)
T ss_pred             HhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence            8888999999888775433 5555666667777788999999988655543  478888888888999999999999999


Q ss_pred             HHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 036290          641 KMKLANLQPSQ--ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQ  716 (796)
Q Consensus       641 ~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~  716 (796)
                      +....--.|+.  ..|-.+-......|++..|.+.|+-..   --.|+ ...++.|.-.-.+.|++++|..+++.. .+.
T Consensus       383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL---~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~  459 (478)
T KOG1129|consen  383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLAL---TSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM  459 (478)
T ss_pred             HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHh---ccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence            98876555644  347777777788999999999998887   33555 788999999999999999999999988 345


Q ss_pred             CC
Q 036290          717 PS  718 (796)
Q Consensus       717 p~  718 (796)
                      |+
T Consensus       460 P~  461 (478)
T KOG1129|consen  460 PD  461 (478)
T ss_pred             cc
Confidence            55

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=1.7e-05  Score=77.35  Aligned_cols=286  Identities=10%  Similarity=0.031  Sum_probs=168.1

Q ss_pred             cCCchHHHHHHHHHHhcC-CcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHH
Q 036290          426 NCCDADVLKTFCNIWESG-VEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFE  504 (796)
Q Consensus       426 ~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  504 (796)
                      .++...+...+-.+.... ++-|......+...+...|+.+++...|+...-.+ +-+........-.+...|+.+....
T Consensus       209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~  287 (564)
T KOG1174|consen  209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSA  287 (564)
T ss_pred             hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHH
Confidence            444444444443333322 33344455555555556666666666655544332 2222222223333445555555544


Q ss_pred             HHhcCCC---CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCC
Q 036290          505 FSNGAER---LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFN  581 (796)
Q Consensus       505 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  581 (796)
                      +...+..   .....|-.-...+...++++.|+.+-++-++.. +.+...|..--..+...++.+.|.-.|+..+...+.
T Consensus       288 L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~  366 (564)
T KOG1174|consen  288 LMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY  366 (564)
T ss_pred             HHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchh
Confidence            4433332   223334444445555677777777777665432 222233333334556677777777777766654432


Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHH-HHHH-hcCChHHHHHHHHHHHHCCCCCCH-HHHHH
Q 036290          582 TEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLI-MAYA-HHGLVSEAMEIFDKMKLANLQPSQ-ATFVS  656 (796)
Q Consensus       582 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li-~~~~-~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~  656 (796)
                       +...|.-|+..|...|++.+|..+-...+..  .+..+...+. ..+. ...--++|.++++.-..  +.|+. ...+.
T Consensus       367 -rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~  443 (564)
T KOG1174|consen  367 -RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNL  443 (564)
T ss_pred             -hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHH
Confidence             6677888888888888888876655333332  1222222221 1111 11224778888888777  67854 34666


Q ss_pred             HHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH
Q 036290          657 VMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP  719 (796)
Q Consensus       657 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~  719 (796)
                      +...|...|..+.++.+++...   ...||....+.|.+.+.....+++|++.|... ...|+.
T Consensus       444 ~AEL~~~Eg~~~D~i~LLe~~L---~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~  504 (564)
T KOG1174|consen  444 IAELCQVEGPTKDIIKLLEKHL---IIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS  504 (564)
T ss_pred             HHHHHHhhCccchHHHHHHHHH---hhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence            7778889999999999999888   56899999999999999999999999998876 556643

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.86  E-value=2.3e-06  Score=89.58  Aligned_cols=202  Identities=13%  Similarity=0.122  Sum_probs=108.9

Q ss_pred             HHHHHHHhcCCchHHHHHHHHHHhc-----C-Cccc-HHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHH
Q 036290          418 ELLSGYCFNCCDADVLKTFCNIWES-----G-VEVN-GCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLI  490 (796)
Q Consensus       418 ~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  490 (796)
                      .+...|...+++++|..+|+++...     | ..|. ..+++.|-.+|.+.|++++|...++...+              
T Consensus       246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~--------------  311 (508)
T KOG1840|consen  246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALE--------------  311 (508)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH--------------
Confidence            4556677777777777777776542     1 1111 22333334444444554444444433322              


Q ss_pred             HHHHhcCCcchHHHHHhcCC---CCCHh-hHHHHHHHHHHcCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhccC
Q 036290          491 KSYVNFGQLDNSFEFSNGAE---RLDMA-SWGAMMSALVHQGHNHEAVTIFHSLVEA---GEKPDEYILGTILNSCAAIG  563 (796)
Q Consensus       491 ~~~~~~g~~~~A~~~~~~~~---~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~~~~~~~  563 (796)
                                    +++...   .+.+. .++.+...++..+++++|..+++...+.   -..++..             
T Consensus       312 --------------I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~-------------  364 (508)
T KOG1840|consen  312 --------------IYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV-------------  364 (508)
T ss_pred             --------------HHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch-------------
Confidence                          111110   11222 3455666777788888888888755321   1111110             


Q ss_pred             chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC----------CChhHHHHHHHHHHhcCChH
Q 036290          564 AYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS----------NDVIVYNTLIMAYAHHGLVS  633 (796)
Q Consensus       564 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~~li~~~~~~g~~~  633 (796)
                                        .-..+++.|...|...|++++|.+++++.+..          ..-..++.|...|.+.++++
T Consensus       365 ------------------~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~  426 (508)
T KOG1840|consen  365 ------------------NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYE  426 (508)
T ss_pred             ------------------HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccc
Confidence                              02234455555555555555555555443321          12345666677777777777


Q ss_pred             HHHHHHHHHH----HCCCC-C-CHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 036290          634 EAMEIFDKMK----LANLQ-P-SQATFVSVMSACSHKGLVDKGCLLFKSMD  678 (796)
Q Consensus       634 ~A~~~~~~m~----~~g~~-p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~  678 (796)
                      +|.++|.+..    ..|.. | ...+|..|...|...|+++.|.++.+.+.
T Consensus       427 ~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  427 EAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             hHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            7777666543    33322 3 23557788888888888888888877765

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.85  E-value=1.1e-06  Score=79.06  Aligned_cols=201  Identities=12%  Similarity=0.066  Sum_probs=166.0

Q ss_pred             hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 036290          516 SWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYA  595 (796)
Q Consensus       516 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  595 (796)
                      +...+.-+|.+.|+...|..-+++..+.. +-+..++..+...|.+.|..+.|.+.|+...+.... +..+.|.....+|
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC  114 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence            34556678889999999999999988763 344567777888889999999999999988887665 7778889999999


Q ss_pred             hcCCHHHHHHHHhccCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHH
Q 036290          596 KCGDIKGARMAFDQSFNSN----DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKG  670 (796)
Q Consensus       596 ~~g~~~~A~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A  670 (796)
                      ..|++++|...|++.+..|    -..+|..+.-+..+.|+++.|.+.|++..+  ..| ...+...+.+.....|++-.|
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~A  192 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPA  192 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHH
Confidence            9999999999999999887    456888888889999999999999999999  666 556778888889999999999


Q ss_pred             HHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHH
Q 036290          671 CLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVY  722 (796)
Q Consensus       671 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~  722 (796)
                      ..+++.....  ..++...+...|+.-.+.|+-+.|-++=..+ ..-|...-|
T Consensus       193 r~~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~  243 (250)
T COG3063         193 RLYLERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY  243 (250)
T ss_pred             HHHHHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence            9999999855  3388888888889999999998888776665 344554443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.79  E-value=5.8e-05  Score=79.88  Aligned_cols=423  Identities=12%  Similarity=0.066  Sum_probs=219.5

Q ss_pred             cCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCC---CCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHH
Q 036290          276 EVECSISIVNALIDMYIKSSGMDYAFKVFERMAD---KDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSI  352 (796)
Q Consensus       276 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~  352 (796)
                      .+.-|..+|..|.-+...+|+++.+-+.|++...   .....|+.+-..+...|....|+.+++.-....-.|+..+--.
T Consensus       318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L  397 (799)
T KOG4162|consen  318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL  397 (799)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence            3566888888888889999999999999988764   3556788888889999999999999888665443454443333


Q ss_pred             HHH-Hh-cccCChHHHHHHHHHHHHh--CC--CCchhHHHHHHHHHHhc-----------CChHHHHHHHHhCCCC---C
Q 036290          353 LLR-QC-GKLLDLDLGLQLQCLALHC--GF--LDEENVTSSLIYMFCRC-----------GAVEMAHSVFDNVSYK---N  412 (796)
Q Consensus       353 ll~-~~-~~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~ll~~~~~~-----------g~~~~A~~~~~~~~~~---~  412 (796)
                      +.. .| .+.+..+++..+-......  |.  ......|-.+--+|...           ....++.+.+++..+.   |
T Consensus       398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d  477 (799)
T KOG4162|consen  398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD  477 (799)
T ss_pred             HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            332 22 2345566665555444431  10  11122222222222211           0112233333333221   1


Q ss_pred             hhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHh-CCCCCchhHhHHHH
Q 036290          413 ITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKT-GFSSCGYICSSLIK  491 (796)
Q Consensus       413 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~  491 (796)
                      ...--.+.--|+..++.+.|++..++..+.+-.-+...|..+.-.+...+++..|..+.+...+. |.  |-.....-++
T Consensus       478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~  555 (799)
T KOG4162|consen  478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIH  555 (799)
T ss_pred             chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhh
Confidence            11111112223344555555555555555444444445554444555555555555555444331 11  1111111111


Q ss_pred             HHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhccCchHHHH
Q 036290          492 SYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKP--DEYILGTILNSCAAIGAYQRTK  569 (796)
Q Consensus       492 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~  569 (796)
                      .-...++.+++......+..    .|... ......++-...++....+.-.--+|  ...++..+..-....+  ..+.
T Consensus       556 i~~~~~~~e~~l~t~~~~L~----~we~~-~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~  628 (799)
T KOG4162|consen  556 IELTFNDREEALDTCIHKLA----LWEAE-YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAG  628 (799)
T ss_pred             hhhhcccHHHHHHHHHHHHH----HHHhh-hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcc
Confidence            11112233322222111110    00000 00000111111111111111000011  1112222211111000  0000


Q ss_pred             HHHHHHHHhCCCCc--------hhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHH
Q 036290          570 SIHPFVIKLGFNTE--------VYVASAVIDAYAKCGDIKGARMAFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIF  639 (796)
Q Consensus       570 ~~~~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~  639 (796)
                      .-. .+.+..+.|.        ...|......+.+.+..++|...+.+.-.. + ....|......+...|++++|.+.|
T Consensus       629 se~-~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af  707 (799)
T KOG4162|consen  629 SEL-KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAF  707 (799)
T ss_pred             ccc-ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence            000 0111111121        224455667778888888887666343332 2 4455666667778899999999999


Q ss_pred             HHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHH--HHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          640 DKMKLANLQP-SQATFVSVMSACSHKGLVDKGCL--LFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       640 ~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~--~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      .....  +.| +..+..++...+.+.|+..-|..  ++..+.   .+.|+ ...|..+...+.+.|+.++|.+.|...
T Consensus       708 ~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dal---r~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa  780 (799)
T KOG4162|consen  708 LVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDAL---RLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA  780 (799)
T ss_pred             HHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence            99888  788 55678888899999998777777  888888   56787 899999999999999999999999876

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.74  E-value=3.9e-05  Score=72.98  Aligned_cols=317  Identities=12%  Similarity=0.072  Sum_probs=200.5

Q ss_pred             HHHHHHhcCChHHHHHHHHhCCCCChhhHHHHHH---HHHhcCCchHHHHHHHHHHhcCCcccHHHHHH-HHHHhcccCc
Q 036290          388 LIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLS---GYCFNCCDADVLKTFCNIWESGVEVNGCTFFY-VVETCCRSEN  463 (796)
Q Consensus       388 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~  463 (796)
                      +-..+...|++.+|+.-|....+.|...|.++..   .|...|+...|+.-+....+  ++||-..-.. --..+.+.|.
T Consensus        44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Ge  121 (504)
T KOG0624|consen   44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGE  121 (504)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhccc
Confidence            4455666788888888888888777777776653   67777888778777777766  4666432211 0112233444


Q ss_pred             HHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 036290          464 QQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEA  543 (796)
Q Consensus       464 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~  543 (796)
                      ++.|..-|+.+++...                                              ..|...+|.+-+....+ 
T Consensus       122 le~A~~DF~~vl~~~~----------------------------------------------s~~~~~eaqskl~~~~e-  154 (504)
T KOG0624|consen  122 LEQAEADFDQVLQHEP----------------------------------------------SNGLVLEAQSKLALIQE-  154 (504)
T ss_pred             HHHHHHHHHHHHhcCC----------------------------------------------CcchhHHHHHHHHhHHH-
Confidence            4444444444433320                                              00111111111111000 


Q ss_pred             CCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcc--CCCCChhHHHH
Q 036290          544 GEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQS--FNSNDVIVYNT  621 (796)
Q Consensus       544 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~  621 (796)
                           .......+..+...|+...+.+....+.+..+ .|...+..-..+|...|++..|+.-++..  +...+...+--
T Consensus       155 -----~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~yk  228 (504)
T KOG0624|consen  155 -----HWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYK  228 (504)
T ss_pred             -----HHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHH
Confidence                 01112233344556677777777776666543 37777777788888888888887666332  33456666667


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH----HHHH---------HHHHhccCCHHHHHHHHHHhHhhcCCCCC--
Q 036290          622 LIMAYAHHGLVSEAMEIFDKMKLANLQPSQAT----FVSV---------MSACSHKGLVDKGCLLFKSMDSQYGMQPS--  686 (796)
Q Consensus       622 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~l---------l~~~~~~g~~~~A~~~~~~~~~~~~~~p~--  686 (796)
                      +-..+-..|+.+.++...++-.+  +.||...    |..|         +......++|.++++-.+...   ...|.  
T Consensus       229 is~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vl---k~ep~~~  303 (504)
T KOG0624|consen  229 ISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVL---KNEPEET  303 (504)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---hcCCccc
Confidence            77777888888888888888877  6676643    2111         123345667777777777766   34555  


Q ss_pred             ---chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290          687 ---PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS-PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK  761 (796)
Q Consensus       687 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  761 (796)
                         ...+..+-.++...|++.+|++...+. .+.|| ..++-.-..+|....+++.|++-|+++.+.+|+|..+...|-.
T Consensus       304 ~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~  383 (504)
T KOG0624|consen  304 MIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLER  383 (504)
T ss_pred             ceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence               234556677788889999999888776 66775 6788888888988899999999999999999988887766655


Q ss_pred             hhh
Q 036290          762 RKR  764 (796)
Q Consensus       762 ~~~  764 (796)
                      +++
T Consensus       384 Akr  386 (504)
T KOG0624|consen  384 AKR  386 (504)
T ss_pred             HHH
Confidence            333

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.73  E-value=3.7e-07  Score=89.99  Aligned_cols=224  Identities=11%  Similarity=0.110  Sum_probs=138.7

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhc
Q 036290          519 AMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFN-TEVYVASAVIDAYAKC  597 (796)
Q Consensus       519 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~  597 (796)
                      -+.+++...|+++.++   .++.... .|.......+...+...++.+.+..-++........ .+.........++...
T Consensus        40 ~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~  115 (290)
T PF04733_consen   40 YQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHE  115 (290)
T ss_dssp             HHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHc
Confidence            3445555666555433   2332222 555555544444444333334443333332222222 2223333334556778


Q ss_pred             CCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--c--CCHHHHHHH
Q 036290          598 GDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSH--K--GLVDKGCLL  673 (796)
Q Consensus       598 g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~--g~~~~A~~~  673 (796)
                      |++++|++++.+.   .+.......+..|.+.++++.|.+.++.|.+  +..|. +...+..++..  .  +.+.+|..+
T Consensus       116 ~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~  189 (290)
T PF04733_consen  116 GDYEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEKYQDAFYI  189 (290)
T ss_dssp             CHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred             CCHHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchhHHHHHHH
Confidence            8999998888332   5667777788889999999999999999987  44444 44445544432  2  368899999


Q ss_pred             HHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh-HHHHHHHHHHHccCC
Q 036290          674 FKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNK-ELGEWASEKLLLLLP  750 (796)
Q Consensus       674 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~p  750 (796)
                      |+++..+  ..+++.+.+.+..++...|++++|.+++++. ...| ++.+...++.+....|+. +.+.+.++++....|
T Consensus       190 f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p  267 (290)
T PF04733_consen  190 FEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP  267 (290)
T ss_dssp             HHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred             HHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence            9998743  4567888888999999999999999998876 4444 456777777777777877 677888888888888


Q ss_pred             CCCc
Q 036290          751 KNDA  754 (796)
Q Consensus       751 ~~~~  754 (796)
                      +.+-
T Consensus       268 ~h~~  271 (290)
T PF04733_consen  268 NHPL  271 (290)
T ss_dssp             TSHH
T ss_pred             CChH
Confidence            7653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.70  E-value=0.00018  Score=78.24  Aligned_cols=550  Identities=12%  Similarity=-0.004  Sum_probs=298.4

Q ss_pred             hhHHHHHhhccCCCC---ceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHHHHHHHHH
Q 036290          196 VAAAERVFYSISSDD---VGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLI  272 (796)
Q Consensus       196 ~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  272 (796)
                      ...|...|=+..+.|   ...|..|-..|+..-+...|...|+...+-+ ..|..........++...+++.|..+.-..
T Consensus       474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~  552 (1238)
T KOG1127|consen  474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA  552 (1238)
T ss_pred             HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence            444544443333323   2357777777777777888888888876543 234556667778888888888888772222


Q ss_pred             HHhc-CCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCC---CCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcc
Q 036290          273 IRSE-VECSISIVNALIDMYIKSSGMDYAFKVFERMAD---KDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHV  348 (796)
Q Consensus       273 ~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~  348 (796)
                      -+.. ...-..-|-.+--.|.+.+....|+.-|+...+   .|...|..+..+|.+.|++..|+++|.+...  +.|+. 
T Consensus       553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s-  629 (1238)
T KOG1127|consen  553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS-  629 (1238)
T ss_pred             hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh-
Confidence            1111 000111122233346677888888888887654   3778899999999999999999999988754  34543 


Q ss_pred             hHHHHHH--HhcccCChHHHHHHHHHHHHh------CCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCChhhHHH-H
Q 036290          349 TFSILLR--QCGKLLDLDLGLQLQCLALHC------GFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNE-L  419 (796)
Q Consensus       349 t~~~ll~--~~~~~~~~~~a~~~~~~~~~~------g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-l  419 (796)
                      +|...-.  ..+..|.+.++...+......      +...-..++-.+...+.-.|=..+|.++|+.-.    ..+.. +
T Consensus       630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi----e~f~~~l  705 (1238)
T KOG1127|consen  630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI----ESFIVSL  705 (1238)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH----HHHHHHH
Confidence            3333222  235678888888887776542      111112222222222222333333444443322    11111 1


Q ss_pred             HHHHHhcC----CchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcH---H---HHHHHHHHHHHhCCCCCchhHhHH
Q 036290          420 LSGYCFNC----CDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQ---Q---MVGQIHGAIIKTGFSSCGYICSSL  489 (796)
Q Consensus       420 i~~~~~~g----~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l  489 (796)
                      +...+...    -...+..+|-+... . .|+......+..-.-..+..   +   .+.+.+-.-.  .+..+...+..|
T Consensus       706 ~h~~~~~~~~Wi~asdac~~f~q~e~-~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~~~WyNL  781 (1238)
T KOG1127|consen  706 IHSLQSDRLQWIVASDACYIFSQEEP-S-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHMYPWYNL  781 (1238)
T ss_pred             HHhhhhhHHHHHHHhHHHHHHHHhcc-c-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhccchHHHH
Confidence            11111100    01223333333331 1 33333333333322222221   1   1111111111  111223333333


Q ss_pred             HHHHHh----cCC----cchHHHHHhcCCC---CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036290          490 IKSYVN----FGQ----LDNSFEFSNGAER---LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNS  558 (796)
Q Consensus       490 ~~~~~~----~g~----~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~  558 (796)
                      ...|.+    .|.    ...|...+....+   .+...||.|.-. ...|++.-|...|-+-.... +....+|..+--.
T Consensus       782 Ginylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL  859 (1238)
T KOG1127|consen  782 GINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVL  859 (1238)
T ss_pred             hHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheecccee
Confidence            332222    221    2245555554433   566778776555 55577777777776655442 4556677777777


Q ss_pred             HhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc--cCC--C---CChhHHHHHHHHHHhcCC
Q 036290          559 CAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQ--SFN--S---NDVIVYNTLIMAYAHHGL  631 (796)
Q Consensus       559 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--~~~--~---~~~~~~~~li~~~~~~g~  631 (796)
                      |.+..+++.|.+.|...+...+. +...|--........|+.-++..+|..  .+.  .   ++..-|-+...-...+|+
T Consensus       860 ~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~  938 (1238)
T KOG1127|consen  860 VLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGN  938 (1238)
T ss_pred             EEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccc
Confidence            88899999999999988776544 444444444444556777777777743  111  1   344444444444556666


Q ss_pred             hHHHHHHHHHHHH---------CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHH----HHHHHHH
Q 036290          632 VSEAMEIFDKMKL---------ANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYG----CLVDMLS  698 (796)
Q Consensus       632 ~~~A~~~~~~m~~---------~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~----~l~~~~~  698 (796)
                      .++-....+.+..         .|.+-+...|........+.+.+..|.++..+...-....-+...|+    .+.+.++
T Consensus       939 ~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~l 1018 (1238)
T KOG1127|consen  939 IEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLEL 1018 (1238)
T ss_pred             hHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh
Confidence            5554443333321         12233556777777777778888888777776653222333444444    4556667


Q ss_pred             hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290          699 RNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK  761 (796)
Q Consensus       699 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  761 (796)
                      ..|.++.|..-+......-+..+-.+-+.. .-.|+++++.+.|++++.+-..+....++|+.
T Consensus      1019 slgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~k 1080 (1238)
T KOG1127|consen 1019 SLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCK 1080 (1238)
T ss_pred             hhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHH
Confidence            788888777666555433343333333333 34579999999999999887777776666655

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.69  E-value=2.1e-05  Score=83.52  Aligned_cols=289  Identities=11%  Similarity=0.057  Sum_probs=179.6

Q ss_pred             HHHHhcCCchHHHHHHHHHHhcCCcccHH-HHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCc
Q 036290          421 SGYCFNCCDADVLKTFCNIWESGVEVNGC-TFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQL  499 (796)
Q Consensus       421 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  499 (796)
                      ..+...|++++|++.+.+-..  .-+|.. ....-...+.+.|+.++|..++..+++.+ |.+..-|..+..+..-... 
T Consensus        12 ~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~-   87 (517)
T PF12569_consen   12 SILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQ-   87 (517)
T ss_pred             HHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcc-
Confidence            345667777777777765333  233333 33334445555566666666666666555 3333333333333221110 


Q ss_pred             chHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCch-HHHHHHHHHHHHh
Q 036290          500 DNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAY-QRTKSIHPFVIKL  578 (796)
Q Consensus       500 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~  578 (796)
                                               ......+...++++++...  -|.......+.-.+.....+ ..+..++..+...
T Consensus        88 -------------------------~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K  140 (517)
T PF12569_consen   88 -------------------------LSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK  140 (517)
T ss_pred             -------------------------cccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhc
Confidence                                     0112456667777777655  34444443333333332223 3456667777778


Q ss_pred             CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC-----------------CCCChh--HHHHHHHHHHhcCChHHHHHHH
Q 036290          579 GFNTEVYVASAVIDAYAKCGDIKGARMAFDQSF-----------------NSNDVI--VYNTLIMAYAHHGLVSEAMEIF  639 (796)
Q Consensus       579 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------------~~~~~~--~~~~li~~~~~~g~~~~A~~~~  639 (796)
                      |++   .+|+.+-..|....+.+-..+++....                 ..|...  ++.-+...|-..|++++|+++.
T Consensus       141 gvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~I  217 (517)
T PF12569_consen  141 GVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYI  217 (517)
T ss_pred             CCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            865   355566666665555544444442211                 113333  3455677788999999999999


Q ss_pred             HHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC---
Q 036290          640 DKMKLANLQPS-QATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIMP---  714 (796)
Q Consensus       640 ~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---  714 (796)
                      ++.++  ..|+ ...|..-.+.+-+.|++++|.+.++...   .+.+. ..+=+-.+..+.|+|++++|.+++...-   
T Consensus       218 d~aI~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar---~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  218 DKAIE--HTPTLVELYMTKARILKHAGDLKEAAEAMDEAR---ELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED  292 (517)
T ss_pred             HHHHh--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence            99999  6685 5567778889999999999999999998   45554 5555567788899999999999998872   


Q ss_pred             CCCCH------HHHHH--HHHHHHhcCChHHHHHHHHHHHcc
Q 036290          715 FQPSP------TVYRS--LLSGCRIHGNKELGEWASEKLLLL  748 (796)
Q Consensus       715 ~~p~~------~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~  748 (796)
                      ..|-.      -.|..  -..+|.+.|++..|..-+..+.+.
T Consensus       293 ~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~  334 (517)
T PF12569_consen  293 VDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH  334 (517)
T ss_pred             CCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            22211      24543  466689999999999998887763

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.60  E-value=2.5e-05  Score=78.44  Aligned_cols=145  Identities=10%  Similarity=-0.045  Sum_probs=76.0

Q ss_pred             CchHHHHHHHHHHhcC-Cccc--HHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHH
Q 036290          428 CDADVLKTFCNIWESG-VEVN--GCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFE  504 (796)
Q Consensus       428 ~~~~a~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  504 (796)
                      ..+.++..+.++.... ..|+  ...|...-..+...|+.+.|...+....+.. |.+...++.+...+...|++++|..
T Consensus        41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            4445555555555321 1222  2234444444555566666666666655544 4445666666666666666666666


Q ss_pred             HHhcCCC--C-CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHH
Q 036290          505 FSNGAER--L-DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFV  575 (796)
Q Consensus       505 ~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~  575 (796)
                      .|+...+  | +...|..+...+...|++++|.+.|++..+.  .|+..........+...++.++|...+...
T Consensus       120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~  191 (296)
T PRK11189        120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQR  191 (296)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            6665543  2 3445555666666667777777777666554  333221111122223344556666655443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.59  E-value=3.5e-07  Score=80.34  Aligned_cols=121  Identities=11%  Similarity=0.015  Sum_probs=97.9

Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-
Q 036290          636 MEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-  713 (796)
Q Consensus       636 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-  713 (796)
                      ..++++..+  +.|+.  +..+..++...|++++|...|+...   ...|+ ...|..+..++.+.|++++|...+++. 
T Consensus        13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al   85 (144)
T PRK15359         13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL   85 (144)
T ss_pred             HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            345666666  56654  4456677888999999999999987   55675 788888999999999999999999988 


Q ss_pred             CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecChh
Q 036290          714 PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSKRK  763 (796)
Q Consensus       714 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  763 (796)
                      ...| +...+..+..++...|+.++|+..++++++..|+++..+...++.+
T Consensus        86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~  136 (144)
T PRK15359         86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ  136 (144)
T ss_pred             hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            4455 5678888899999999999999999999999999998887665533

>PF12854 PPR_1: PPR repeat

Probab=98.59  E-value=4.6e-08  Score=60.56  Aligned_cols=34  Identities=35%  Similarity=0.513  Sum_probs=28.8

Q ss_pred             hCCCCCchhhHHHHHHHHccCChhHHHHHhcccC
Q 036290           73 LGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMA  106 (796)
Q Consensus        73 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~  106 (796)
                      .|+.||..+||+||++|++.|++++|.++|++|+
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            3778888888888888888888888888888874

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.57  E-value=6.4e-05  Score=70.11  Aligned_cols=188  Identities=7%  Similarity=-0.044  Sum_probs=94.9

Q ss_pred             hHHHHHHHccCChhHHHHHhhccCCC---CceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHH-HHHhhccC
Q 036290          184 CSVLNFYAKLGDVAAAERVFYSISSD---DVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFIN-ALQGCSLV  259 (796)
Q Consensus       184 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~  259 (796)
                      .+++..+.+..++++|++++....+.   +....+.|-.+|-...++..|.++++++-..  .|...-|.. -...+-+.
T Consensus        14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A   91 (459)
T KOG4340|consen   14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA   91 (459)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence            34444455555566666655544332   2233444455555556666666666665443  222222211 11122233


Q ss_pred             CCchHHHHHHHHHHHhcCCCChHHHHHHH--H--hhhcCCCHHHHHHHHhhcCC-CCcchHHHHHHHHHhCCCccHHHHH
Q 036290          260 ADFDIGRQIHGLIIRSEVECSISIVNALI--D--MYIKSSGMDYAFKVFERMAD-KDVISWNTLFGGFSENKNPGQTASL  334 (796)
Q Consensus       260 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li--~--~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~l  334 (796)
                      +.+..|..+...|...   +.  ..+..+  .  ..-..+++..+..+++..+. .+..+.+.......+.|+++.|++-
T Consensus        92 ~i~ADALrV~~~~~D~---~~--L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqk  166 (459)
T KOG4340|consen   92 CIYADALRVAFLLLDN---PA--LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQK  166 (459)
T ss_pred             cccHHHHHHHHHhcCC---HH--HHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHH
Confidence            4444454444444321   11  111111  1  12245667777777777763 4555555555555677777777777


Q ss_pred             HHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCC
Q 036290          335 FHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFL  379 (796)
Q Consensus       335 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~  379 (796)
                      |....+-|--.....|+..+ ++.+.++.+.|++...+++++|+.
T Consensus       167 FqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r  210 (459)
T KOG4340|consen  167 FQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIR  210 (459)
T ss_pred             HHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence            77765543222334555444 344567777777777777766653

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.55  E-value=0.0015  Score=66.55  Aligned_cols=183  Identities=13%  Similarity=0.115  Sum_probs=137.7

Q ss_pred             hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHh
Q 036290          530 NHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNT-EVYVASAVIDAYAKCGDIKGARMAFD  608 (796)
Q Consensus       530 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~  608 (796)
                      .+.....++++...-..--..+|..+++...+..-+..|..+|.+..+.+..+ ++.+.++++..|| .++.+-|.++|+
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe  425 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE  425 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence            45566666666543322233678889999999999999999999999988776 8888899998887 578899999996


Q ss_pred             ccCCC-CCh-hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHhhcC--
Q 036290          609 QSFNS-NDV-IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQ--ATFVSVMSACSHKGLVDKGCLLFKSMDSQYG--  682 (796)
Q Consensus       609 ~~~~~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--  682 (796)
                      -.++. +|. .--...+..+...++-..+..+|++....++.|+.  ..|..+|.--+.-|++..+.++-+++...+.  
T Consensus       426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~  505 (656)
T KOG1914|consen  426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD  505 (656)
T ss_pred             HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence            66665 444 44457788888999999999999999998777744  6799999888999999999999988876544  


Q ss_pred             CCCCchHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          683 MQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       683 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      ..|....-..+++.|.-.+.+..-..-+..+
T Consensus       506 qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l  536 (656)
T KOG1914|consen  506 QEYEGNETALFVDRYGILDLYPCSLDELKFL  536 (656)
T ss_pred             hcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence            4444445555677776666655544444444

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=0.00011  Score=74.75  Aligned_cols=228  Identities=14%  Similarity=0.104  Sum_probs=140.0

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchh-------HHHH
Q 036290          517 WGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVY-------VASA  589 (796)
Q Consensus       517 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~  589 (796)
                      ...+..+..+..++..|.+-+....+..  -+..-++..-.++...|.+......-....+.|.. ...       .+..
T Consensus       227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r  303 (539)
T KOG0548|consen  227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR  303 (539)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence            3455566666777777777777766553  33333344444566666666555554444443322 111       1122


Q ss_pred             HHHHHHhcCCHHHHHHHHhccCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCCH
Q 036290          590 VIDAYAKCGDIKGARMAFDQSFNS-NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQAT-FVSVMSACSHKGLV  667 (796)
Q Consensus       590 li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~  667 (796)
                      +..+|.+.++++.|...|.+.+.. .+..       ...+....+++++..+...-  +.|.... ...-...+.+.|++
T Consensus       304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~-------~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy  374 (539)
T KOG0548|consen  304 LGNAYTKREDYEGAIKYYQKALTEHRTPD-------LLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDY  374 (539)
T ss_pred             hhhhhhhHHhHHHHHHHHHHHhhhhcCHH-------HHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCH
Confidence            344677778888888888665543 2211       12233345555555555544  4454322 22224566778888


Q ss_pred             HHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHH
Q 036290          668 DKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP-TVYRSLLSGCRIHGNKELGEWASEK  744 (796)
Q Consensus       668 ~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~  744 (796)
                      ..|+..|.+++.+   .|+ ...|....-+|.+.|.+..|++-.+.. .+.|+. ..|..=..++....+++.|.+.|++
T Consensus       375 ~~Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e  451 (539)
T KOG0548|consen  375 PEAVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE  451 (539)
T ss_pred             HHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888843   465 778888888888888888888877666 455554 4555555666666788888888888


Q ss_pred             HHccCCCCCcceEEe
Q 036290          745 LLLLLPKNDAAHVLL  759 (796)
Q Consensus       745 ~~~~~p~~~~~~~~l  759 (796)
                      .++.+|++..+-..+
T Consensus       452 ale~dp~~~e~~~~~  466 (539)
T KOG0548|consen  452 ALELDPSNAEAIDGY  466 (539)
T ss_pred             HHhcCchhHHHHHHH
Confidence            888888776654444

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.50  E-value=0.00026  Score=66.15  Aligned_cols=177  Identities=15%  Similarity=0.154  Sum_probs=96.1

Q ss_pred             hcCCcchHHHHHhcCC-CCCHhhHHHHHHHHHHcCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhccCchHHHHHHH
Q 036290          495 NFGQLDNSFEFSNGAE-RLDMASWGAMMSALVHQGHNHEAVTIFHSLVE-AGEKPDEYILGTILNSCAAIGAYQRTKSIH  572 (796)
Q Consensus       495 ~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~  572 (796)
                      ..+++..+..+.++.. +.+..+.+.......+.|+++.|++-|+...+ .|.+|- ..|+..+. ..+.++++.|.+..
T Consensus       124 se~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl-lAYniALa-Hy~~~qyasALk~i  201 (459)
T KOG4340|consen  124 SEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL-LAYNLALA-HYSSRQYASALKHI  201 (459)
T ss_pred             ccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch-hHHHHHHH-HHhhhhHHHHHHHH
Confidence            3445555555555554 23444444444444556666666666665543 333332 34443332 23445566666666


Q ss_pred             HHHHHhCCC-------------Cch--------hHHHHHH-------HHHHhcCCHHHHHHHHhccCCC----CChhHHH
Q 036290          573 PFVIKLGFN-------------TEV--------YVASAVI-------DAYAKCGDIKGARMAFDQSFNS----NDVIVYN  620 (796)
Q Consensus       573 ~~~~~~~~~-------------~~~--------~~~~~li-------~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~  620 (796)
                      .+++.+|++             ||+        -.-+.++       ..+.+.|+++.|.+.+-++-+.    -|++|..
T Consensus       202 SEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLH  281 (459)
T KOG4340|consen  202 SEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLH  281 (459)
T ss_pred             HHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhh
Confidence            666655442             111        1112233       3345678888888888455444    2666655


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHH
Q 036290          621 TLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKS  676 (796)
Q Consensus       621 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~  676 (796)
                      .+.-.-+ .+++.+..+-++-+.+  +.| ...||..++--||+..-++.|-.++.+
T Consensus       282 N~Al~n~-~~~p~~g~~KLqFLL~--~nPfP~ETFANlLllyCKNeyf~lAADvLAE  335 (459)
T KOG4340|consen  282 NQALMNM-DARPTEGFEKLQFLLQ--QNPFPPETFANLLLLYCKNEYFDLAADVLAE  335 (459)
T ss_pred             HHHHhcc-cCCccccHHHHHHHHh--cCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence            4432221 3445555555555555  345 567888888888888888888777654

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.47  E-value=0.00031  Score=83.74  Aligned_cols=365  Identities=7%  Similarity=-0.050  Sum_probs=218.7

Q ss_pred             HHHHHHhcCChHHHHHHHHhCCCCChhh--HHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHH
Q 036290          388 LIYMFCRCGAVEMAHSVFDNVSYKNITT--WNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQ  465 (796)
Q Consensus       388 ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~  465 (796)
                      ....+...|++.+|..........+...  ...........|+.+.+..++..+.......+..........+...++++
T Consensus       347 aa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~  426 (903)
T PRK04841        347 AAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYS  426 (903)
T ss_pred             HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHH
Confidence            3444566677777666665554432211  11122334456777776666665422111111222223334445667888


Q ss_pred             HHHHHHHHHHHhCCC------CC--chhHhHHHHHHHhcCCcchHHHHHhcCCC----CCH----hhHHHHHHHHHHcCC
Q 036290          466 MVGQIHGAIIKTGFS------SC--GYICSSLIKSYVNFGQLDNSFEFSNGAER----LDM----ASWGAMMSALVHQGH  529 (796)
Q Consensus       466 ~a~~~~~~~~~~~~~------~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~~~  529 (796)
                      ++...+....+.--.      +.  ......+...+...|++++|...++....    .+.    ...+.+...+...|+
T Consensus       427 ~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~  506 (903)
T PRK04841        427 EVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE  506 (903)
T ss_pred             HHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC
Confidence            888888776543111      11  11222334456678899988887766432    221    234555566778899


Q ss_pred             hhHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHhccCchHHHHHHHHHHHHh----CCC--C-chhHHHHHHHHHHhc
Q 036290          530 NHEAVTIFHSLVEAGE---KPD--EYILGTILNSCAAIGAYQRTKSIHPFVIKL----GFN--T-EVYVASAVIDAYAKC  597 (796)
Q Consensus       530 ~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~  597 (796)
                      +++|...+.+.....-   .+.  ..++..+...+...|+++.|...+++....    +..  + ....+..+...+...
T Consensus       507 ~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  586 (903)
T PRK04841        507 LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW  586 (903)
T ss_pred             HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence            9999999888754211   111  234445556678899999999988876552    221  1 223344556667778


Q ss_pred             CCHHHHHHHHhccCCC-----C--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHH-----HHHHHHHhcc
Q 036290          598 GDIKGARMAFDQSFNS-----N--DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATF-----VSVMSACSHK  664 (796)
Q Consensus       598 g~~~~A~~~~~~~~~~-----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~-----~~ll~~~~~~  664 (796)
                      |++++|...+.+.+..     +  ....+..+...+...|+++.|...+++.....-.. ....+     ...+..+...
T Consensus       587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  666 (903)
T PRK04841        587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT  666 (903)
T ss_pred             cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC
Confidence            9999998888655432     1  23344456667888999999999998875521111 11111     1112334558


Q ss_pred             CCHHHHHHHHHHhHhhcCCCCCch----HHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhc
Q 036290          665 GLVDKGCLLFKSMDSQYGMQPSPD----CYGCLVDMLSRNGYLEDAKHVIEIM-------PFQPS-PTVYRSLLSGCRIH  732 (796)
Q Consensus       665 g~~~~A~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~  732 (796)
                      |+.+.|..++...... .. ....    .+..+..++...|++++|...+++.       +..++ ..+...+..++...
T Consensus       667 g~~~~A~~~l~~~~~~-~~-~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~  744 (903)
T PRK04841        667 GDKEAAANWLRQAPKP-EF-ANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQ  744 (903)
T ss_pred             CCHHHHHHHHHhcCCC-CC-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHc
Confidence            8999999998776521 11 1111    1456778889999999999998876       22222 24566667778999


Q ss_pred             CChHHHHHHHHHHHccCCCCCc
Q 036290          733 GNKELGEWASEKLLLLLPKNDA  754 (796)
Q Consensus       733 g~~~~A~~~~~~~~~~~p~~~~  754 (796)
                      |+.++|...+++++++......
T Consensus       745 G~~~~A~~~L~~Al~la~~~g~  766 (903)
T PRK04841        745 GRKSEAQRVLLEALKLANRTGF  766 (903)
T ss_pred             CCHHHHHHHHHHHHHHhCccch
Confidence            9999999999999998755443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.43  E-value=0.00066  Score=70.99  Aligned_cols=20  Identities=10%  Similarity=-0.260  Sum_probs=12.3

Q ss_pred             HHhcCChHHHHHHHHHHHcc
Q 036290          729 CRIHGNKELGEWASEKLLLL  748 (796)
Q Consensus       729 ~~~~g~~~~A~~~~~~~~~~  748 (796)
                      +...|+.+.|.+.+..++.+
T Consensus       317 ~~~~g~~~~A~~~L~~al~~  336 (355)
T cd05804         317 AFAEGNYATALELLGPVRDD  336 (355)
T ss_pred             HHHcCCHHHHHHHHHHHHHH
Confidence            45666666666666666543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF12854 PPR_1: PPR repeat

Probab=98.41  E-value=4.4e-07  Score=56.17  Aligned_cols=33  Identities=27%  Similarity=0.522  Sum_probs=24.3

Q ss_pred             CCCCchhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036290          377 GFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVS  409 (796)
Q Consensus       377 g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~  409 (796)
                      |+.||..+|++||++||+.|++++|.++|++|+
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            567777777777777777777777777777763

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.41  E-value=1.7e-05  Score=73.85  Aligned_cols=155  Identities=12%  Similarity=0.152  Sum_probs=111.5

Q ss_pred             HHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHH
Q 036290          591 IDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDK  669 (796)
Q Consensus       591 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~  669 (796)
                      +-.|...|+++.+.... +....+.        ..+...++.+++...+++..+  ..| |...|..+...|...|++++
T Consensus        23 ~~~Y~~~g~~~~v~~~~-~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~   91 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEY-QRLADPL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDN   91 (198)
T ss_pred             HHHHHHcchHHHHHHHH-HHHhCcc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHH
Confidence            34566777776654443 2211111        011225566777777777777  456 77778888888999999999


Q ss_pred             HHHHHHHhHhhcCCCCC-chHHHHHHHHH-HhcCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHH
Q 036290          670 GCLLFKSMDSQYGMQPS-PDCYGCLVDML-SRNGY--LEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASE  743 (796)
Q Consensus       670 A~~~~~~~~~~~~~~p~-~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~  743 (796)
                      |...+++..   .+.|+ ...+..+..++ ...|+  .++|.+++++. ...| +...+..+...+.+.|++++|+..++
T Consensus        92 A~~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~  168 (198)
T PRK10370         92 ALLAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ  168 (198)
T ss_pred             HHHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999999888   55676 77777788764 67777  58999999888 4555 55778888888899999999999999


Q ss_pred             HHHccCCCCCcceEEe
Q 036290          744 KLLLLLPKNDAAHVLL  759 (796)
Q Consensus       744 ~~~~~~p~~~~~~~~l  759 (796)
                      ++++.+|.+..-+..+
T Consensus       169 ~aL~l~~~~~~r~~~i  184 (198)
T PRK10370        169 KVLDLNSPRVNRTQLV  184 (198)
T ss_pred             HHHhhCCCCccHHHHH
Confidence            9999988877655444

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.41  E-value=4.1e-05  Score=75.66  Aligned_cols=148  Identities=14%  Similarity=0.156  Sum_probs=80.3

Q ss_pred             HHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCchH
Q 036290          491 KSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAA----IGAYQ  566 (796)
Q Consensus       491 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~  566 (796)
                      ..+...|++++|++++...  .+.......+..|.+.++++.|.+.++.|.+.  ..| .+...+..++..    ...+.
T Consensus       110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~  184 (290)
T PF04733_consen  110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQ  184 (290)
T ss_dssp             HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCC
T ss_pred             HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHH
Confidence            3445556666666665554  34444555667777777777777777777653  233 333333333322    22456


Q ss_pred             HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 036290          567 RTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLV-SEAMEIFDKMK  643 (796)
Q Consensus       567 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~  643 (796)
                      .|..+|+++.+. +.+++.+.+.+..+....|++++|.+++.+.+..  .+..+...++......|+. +.+.+.+.++.
T Consensus       185 ~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~  263 (290)
T PF04733_consen  185 DAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK  263 (290)
T ss_dssp             HHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence            666666665432 3345555566666666666666666666555543  2444555555555555555 55556666666


Q ss_pred             H
Q 036290          644 L  644 (796)
Q Consensus       644 ~  644 (796)
                      .
T Consensus       264 ~  264 (290)
T PF04733_consen  264 Q  264 (290)
T ss_dssp             H
T ss_pred             H
Confidence            5

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.41  E-value=0.00044  Score=72.35  Aligned_cols=298  Identities=8%  Similarity=-0.082  Sum_probs=184.7

Q ss_pred             hhhHHHHHHHHHhcCCchHHHHHHHHHHhcC-CcccHHHHHH-HHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhH--
Q 036290          413 ITTWNELLSGYCFNCCDADVLKTFCNIWESG-VEVNGCTFFY-VVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSS--  488 (796)
Q Consensus       413 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--  488 (796)
                      ...|..+...+...|+.+.+...+....... ..++...... -...+...|+++.+.++++...+.. |.+...+..  
T Consensus         6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~   84 (355)
T cd05804           6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL   84 (355)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence            3456667777777888888777666655432 2233322222 2234466789999999999998874 445444442  


Q ss_pred             -HHHHHHhcCCcchHHHHHhcCCC--C-CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc
Q 036290          489 -LIKSYVNFGQLDNSFEFSNGAER--L-DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGA  564 (796)
Q Consensus       489 -l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~  564 (796)
                       ........+..+.+.+.+.....  | .......+...+...|++++|...+++..+.. +.+...+..+-..+...|+
T Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~  163 (355)
T cd05804          85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR  163 (355)
T ss_pred             HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence             22222234556666666655333  2 22334455567888999999999999998763 4445667778888999999


Q ss_pred             hHHHHHHHHHHHHhCC-CCch--hHHHHHHHHHHhcCCHHHHHHHHhccCCC-CChhHH----H--HHHHHHHhcCChHH
Q 036290          565 YQRTKSIHPFVIKLGF-NTEV--YVASAVIDAYAKCGDIKGARMAFDQSFNS-NDVIVY----N--TLIMAYAHHGLVSE  634 (796)
Q Consensus       565 ~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~----~--~li~~~~~~g~~~~  634 (796)
                      +++|...++....... .++.  ..+..+...+...|++++|...+++.... +....+    +  .++.-+...|..+.
T Consensus       164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~  243 (355)
T cd05804         164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV  243 (355)
T ss_pred             HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence            9999999998887543 2232  34557888999999999999999665432 211111    1  22333344454443


Q ss_pred             HHHHHHHHHH---CCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCC------CC-CchHHHHHHHHHHhcCC
Q 036290          635 AMEIFDKMKL---ANLQPSQ--ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGM------QP-SPDCYGCLVDMLSRNGY  702 (796)
Q Consensus       635 A~~~~~~m~~---~g~~p~~--~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~------~p-~~~~~~~l~~~~~~~g~  702 (796)
                      +.++ +.+..   .......  ........++...|+.+.|..+++.+.....-      .. ..........++.+.|+
T Consensus       244 ~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~  322 (355)
T cd05804         244 GDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN  322 (355)
T ss_pred             HHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence            3333 22221   1111111  22234566778899999999999998753111      00 13333344455678999


Q ss_pred             hHHHHHHHHhC
Q 036290          703 LEDAKHVIEIM  713 (796)
Q Consensus       703 ~~~A~~~~~~~  713 (796)
                      +++|.+.+...
T Consensus       323 ~~~A~~~L~~a  333 (355)
T cd05804         323 YATALELLGPV  333 (355)
T ss_pred             HHHHHHHHHHH
Confidence            99999998875

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.33  E-value=2.6e-05  Score=76.03  Aligned_cols=60  Identities=18%  Similarity=0.163  Sum_probs=48.6

Q ss_pred             HHHHHHHhcCChHHHHHHHHhC-CCC---C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 036290          692 CLVDMLSRNGYLEDAKHVIEIM-PFQ---P-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPK  751 (796)
Q Consensus       692 ~l~~~~~~~g~~~~A~~~~~~~-~~~---p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  751 (796)
                      .+...+.+.|++++|...+++. ...   | ....+..+..++.+.|++++|...++.+....|+
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~  235 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD  235 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            4667788999999999999887 222   3 3468889999999999999999999888777664

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.31  E-value=3.8e-05  Score=80.73  Aligned_cols=218  Identities=12%  Similarity=0.112  Sum_probs=173.7

Q ss_pred             CCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036290          478 GFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILN  557 (796)
Q Consensus       478 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  557 (796)
                      +++|-...-..+...+.+.|-...|..+|+++     ..|...|.+|+..|+..+|..+..+-.++  +||+.-|..+.+
T Consensus       393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD  465 (777)
T KOG1128|consen  393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD  465 (777)
T ss_pred             CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence            45666677778889999999999999999877     46778888999999999999988887763  899999999999


Q ss_pred             HHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC--ChhHHHHHHHHHHhcCChHHH
Q 036290          558 SCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSN--DVIVYNTLIMAYAHHGLVSEA  635 (796)
Q Consensus       558 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A  635 (796)
                      ......-+++|.++.+.....       .-..+.....+.++++++.+.|+..+.-.  ...+|-.+..+..+.++++.|
T Consensus       466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a  538 (777)
T KOG1128|consen  466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA  538 (777)
T ss_pred             hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence            888888889999888765432       11222223344788999999997766653  667888888888889999999


Q ss_pred             HHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          636 MEIFDKMKLANLQPS-QATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       636 ~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      .+.|..-..  ..|| ...||.+-.+|.+.|+-.+|...+++..+- . .-+...|...+....+-|.+++|++.+.++
T Consensus       539 v~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl  613 (777)
T KOG1128|consen  539 VKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL  613 (777)
T ss_pred             HHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence            999998887  7784 456999999999999999999999998844 4 344556666777788899999999998887

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.28  E-value=0.00058  Score=63.23  Aligned_cols=174  Identities=16%  Similarity=0.128  Sum_probs=115.3

Q ss_pred             HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 036290          572 HPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQ  651 (796)
Q Consensus       572 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  651 (796)
                      .+.+.......+......-...|+..|++++|++.. ...  .+....-.=+..+.+..+++-|.+.+++|.+  +. +.
T Consensus        96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~-~~~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~--id-ed  169 (299)
T KOG3081|consen   96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKAL-HLG--ENLEAAALNVQILLKMHRFDLAEKELKKMQQ--ID-ED  169 (299)
T ss_pred             HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHH-hcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cc-hH
Confidence            333333333333333333345678888888888888 332  2333333334455677788888888888887  33 55


Q ss_pred             HHHHHHHHHHhc----cCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHH
Q 036290          652 ATFVSVMSACSH----KGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM--PFQPSPTVYRSL  725 (796)
Q Consensus       652 ~t~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l  725 (796)
                      .|.+.|..++.+    .+++.+|.-+|++|..  +..|++.+.+-...++...|++++|..++++.  +...++.+...+
T Consensus       170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl  247 (299)
T KOG3081|consen  170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL  247 (299)
T ss_pred             HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence            677777776643    3468888899998872  37788888888888888899999999888887  334466677666


Q ss_pred             HHHHHhcC-ChHHHHHHHHHHHccCCCCC
Q 036290          726 LSGCRIHG-NKELGEWASEKLLLLLPKND  753 (796)
Q Consensus       726 ~~~~~~~g-~~~~A~~~~~~~~~~~p~~~  753 (796)
                      +-+-...| +.+-..+...+.....|..+
T Consensus       248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~  276 (299)
T KOG3081|consen  248 IVLALHLGKDAEVTERNLSQLKLSHPEHP  276 (299)
T ss_pred             HHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence            66655566 44555666677767777654

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.27  E-value=0.025  Score=67.64  Aligned_cols=365  Identities=9%  Similarity=-0.080  Sum_probs=172.8

Q ss_pred             HHhhhcCCCHHHHHHHHhhcCCCCcch--HHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHH
Q 036290          288 IDMYIKSSGMDYAFKVFERMADKDVIS--WNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDL  365 (796)
Q Consensus       288 i~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~  365 (796)
                      ...+...|++.+|..........+...  ...........|+...+..+++.+.......+..........+...|++++
T Consensus       348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~  427 (903)
T PRK04841        348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE  427 (903)
T ss_pred             HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence            344556677776666555554432111  111122344556666666666554221111122222223333455677777


Q ss_pred             HHHHHHHHHHhCC------CCc--hhHHHHHHHHHHhcCChHHHHHHHHhCCC----CCh----hhHHHHHHHHHhcCCc
Q 036290          366 GLQLQCLALHCGF------LDE--ENVTSSLIYMFCRCGAVEMAHSVFDNVSY----KNI----TTWNELLSGYCFNCCD  429 (796)
Q Consensus       366 a~~~~~~~~~~g~------~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~g~~  429 (796)
                      +..++....+.--      .+.  ......+...+...|++++|...++....    .+.    ...+.+...+...|++
T Consensus       428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~  507 (903)
T PRK04841        428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL  507 (903)
T ss_pred             HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence            7777766544210      011  11112222334456666666666655321    111    1233344445556666


Q ss_pred             hHHHHHHHHHHhcCC-----cccHHHHHHHHHHhcccCcHHHHHHHHHHHHHh----CCCCCchhHhHHHHHHHhcCCcc
Q 036290          430 ADVLKTFCNIWESGV-----EVNGCTFFYVVETCCRSENQQMVGQIHGAIIKT----GFSSCGYICSSLIKSYVNFGQLD  500 (796)
Q Consensus       430 ~~a~~~~~~m~~~g~-----~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~  500 (796)
                      ++|...+.+.....-     .+...++..+...+...|+++.|...+++..+.    +.....                 
T Consensus       508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~-----------------  570 (903)
T PRK04841        508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP-----------------  570 (903)
T ss_pred             HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc-----------------
Confidence            666666655543210     011122223333444455555555555444331    100000                 


Q ss_pred             hHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHhccCchHHHHHHHHHHH
Q 036290          501 NSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEA--GEKPD--EYILGTILNSCAAIGAYQRTKSIHPFVI  576 (796)
Q Consensus       501 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~  576 (796)
                                 .....+..+...+...|++++|...+.+....  ...+.  ...+..+.......|+.+.|.+.+....
T Consensus       571 -----------~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~  639 (903)
T PRK04841        571 -----------MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLE  639 (903)
T ss_pred             -----------HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                       00111222333444456666666666554321  11111  2223333445556677777776666654


Q ss_pred             HhCCCC-chhHH-----HHHHHHHHhcCCHHHHHHHHhccCCCC--Ch----hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036290          577 KLGFNT-EVYVA-----SAVIDAYAKCGDIKGARMAFDQSFNSN--DV----IVYNTLIMAYAHHGLVSEAMEIFDKMKL  644 (796)
Q Consensus       577 ~~~~~~-~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~~--~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~  644 (796)
                      ...... ....+     ...+..+...|+.+.|.+.+.......  ..    ..+..+..++...|++++|...+++...
T Consensus       640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~  719 (903)
T PRK04841        640 NLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE  719 (903)
T ss_pred             HHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            421110 00000     111234455778888887774433321  11    1134556677788888888888887765


Q ss_pred             C----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhh
Q 036290          645 A----NLQPS-QATFVSVMSACSHKGLVDKGCLLFKSMDSQ  680 (796)
Q Consensus       645 ~----g~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~  680 (796)
                      .    |..++ ..+...+..++...|+.++|...+.++...
T Consensus       720 ~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l  760 (903)
T PRK04841        720 NARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL  760 (903)
T ss_pred             HHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3    22221 234555566777888888888888888743

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.27  E-value=0.00015  Score=74.46  Aligned_cols=122  Identities=13%  Similarity=0.072  Sum_probs=77.1

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHH
Q 036290          614 NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYG  691 (796)
Q Consensus       614 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~  691 (796)
                      .|......|.-.|--.|.+++|...|+..+.  ++| |..+||.|--.++...+.++|+..|.++.   .++|. +....
T Consensus       428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL---qLqP~yVR~Ry  502 (579)
T KOG1125|consen  428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRAL---QLQPGYVRVRY  502 (579)
T ss_pred             CChhHHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHH---hcCCCeeeeeh
Confidence            4556666666666666777777777777766  666 55567777777777777777777777776   56777 55555


Q ss_pred             HHHHHHHhcCChHHHHHHHHhC----C--------CCCCHHHHHHHHHHHHhcCChHHHHH
Q 036290          692 CLVDMLSRNGYLEDAKHVIEIM----P--------FQPSPTVYRSLLSGCRIHGNKELGEW  740 (796)
Q Consensus       692 ~l~~~~~~~g~~~~A~~~~~~~----~--------~~p~~~~~~~l~~~~~~~g~~~~A~~  740 (796)
                      .|.-.|...|.+.+|.+.|-+.    .        ..++..+|.+|-.++.-.++.+.+.+
T Consensus       503 NlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~  563 (579)
T KOG1125|consen  503 NLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE  563 (579)
T ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence            6666677777777777665443    0        11233567666666666666554433

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.24  E-value=2.5e-05  Score=81.97  Aligned_cols=212  Identities=13%  Similarity=0.083  Sum_probs=171.4

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 036290          518 GAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKC  597 (796)
Q Consensus       518 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  597 (796)
                      ..+...+.+.|-...|..+|+++.         .+..++.+|+..|+..+|..+..+..+  -+|+...|..+.+.....
T Consensus       402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~  470 (777)
T KOG1128|consen  402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDP  470 (777)
T ss_pred             HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccCh
Confidence            456677888899999999999864         456678889999999999998887776  567899999999998888


Q ss_pred             CCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHH
Q 036290          598 GDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKS  676 (796)
Q Consensus       598 g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~  676 (796)
                      .-++.|+++.+.....    .-..+.....+.++++++.+.|+.-.+  +.| -..+|-.+-.+..+.++++.|.+.|..
T Consensus       471 s~yEkawElsn~~sar----A~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~r  544 (777)
T KOG1128|consen  471 SLYEKAWELSNYISAR----AQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFHR  544 (777)
T ss_pred             HHHHHHHHHhhhhhHH----HHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence            8899999999433322    111222223347899999999999888  666 667888888888899999999999999


Q ss_pred             hHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 036290          677 MDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PF-QPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLL  749 (796)
Q Consensus       677 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  749 (796)
                      ..   ...|+ ...|+.+..+|.+.|+..+|...+.+. +. .-+...|...+-...+-|.+++|++++.++++..
T Consensus       545 cv---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  545 CV---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             Hh---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence            98   67888 899999999999999999999999988 33 3344678777778889999999999999998754

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.24  E-value=0.0025  Score=61.14  Aligned_cols=201  Identities=9%  Similarity=0.072  Sum_probs=117.2

Q ss_pred             HHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhc---CCCCCHhhHHHHHHHHHHcCChhH
Q 036290          456 ETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNG---AERLDMASWGAMMSALVHQGHNHE  532 (796)
Q Consensus       456 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~  532 (796)
                      ..+...|+...+......+++.. +.+...|..-..+|...|.+..|+.=++.   +...++...-.+-..+...|+.+.
T Consensus       163 ~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~  241 (504)
T KOG0624|consen  163 KSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAEN  241 (504)
T ss_pred             HHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHH
Confidence            33445566677777776666654 56666777777777777777777654443   333455555555566666777777


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC
Q 036290          533 AVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFN  612 (796)
Q Consensus       533 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  612 (796)
                      ++...++-.+.  .||....-..-.      .+.+..+.++.|                ......+++.++++-.+..++
T Consensus       242 sL~~iRECLKl--dpdHK~Cf~~YK------klkKv~K~les~----------------e~~ie~~~~t~cle~ge~vlk  297 (504)
T KOG0624|consen  242 SLKEIRECLKL--DPDHKLCFPFYK------KLKKVVKSLESA----------------EQAIEEKHWTECLEAGEKVLK  297 (504)
T ss_pred             HHHHHHHHHcc--CcchhhHHHHHH------HHHHHHHHHHHH----------------HHHHhhhhHHHHHHHHHHHHh
Confidence            77766665543  555543221111      111111111111                122334556666555544444


Q ss_pred             C-CC-----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC
Q 036290          613 S-ND-----VIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPS-QATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP  685 (796)
Q Consensus       613 ~-~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p  685 (796)
                      . |.     ...+..+-.++...|++.+|+....+..+  +.|| ..++.--..+|.-...|+.|+.-|+.+.   ...+
T Consensus       298 ~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~---e~n~  372 (504)
T KOG0624|consen  298 NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL---ELNE  372 (504)
T ss_pred             cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---hcCc
Confidence            3 22     12334455566667788888888888877  6774 6677777777877788888888888776   4445


Q ss_pred             C
Q 036290          686 S  686 (796)
Q Consensus       686 ~  686 (796)
                      +
T Consensus       373 s  373 (504)
T KOG0624|consen  373 S  373 (504)
T ss_pred             c
Confidence            4

>PLN02789 farnesyltranstransferase

Probab=98.23  E-value=0.00066  Score=68.13  Aligned_cols=223  Identities=9%  Similarity=-0.010  Sum_probs=137.6

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccC-chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 036290          520 MMSALVHQGHNHEAVTIFHSLVEAGEKPDEY-ILGTILNSCAAIG-AYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKC  597 (796)
Q Consensus       520 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  597 (796)
                      +-..+...++.++|+.+..++.+.  .|+.. .|..--..+...| +++++...++.+.+.+.+ +..+|+.....+.+.
T Consensus        43 ~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l  119 (320)
T PLN02789         43 FRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKL  119 (320)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHc
Confidence            334445566777777777777654  44443 2333223333444 467777777777776555 444555554455555


Q ss_pred             CCH--HHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc---CC---
Q 036290          598 GDI--KGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHK---GL---  666 (796)
Q Consensus       598 g~~--~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~---g~---  666 (796)
                      |+.  ++++.+++.++..  .+..+|+...-.+...|+++++++.++++.+.  .| |...|+.....+.+.   |.   
T Consensus       120 ~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~  197 (320)
T PLN02789        120 GPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEA  197 (320)
T ss_pred             CchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccc
Confidence            542  5566666555543  47778888888888888888888888888884  44 555666655554443   22   


Q ss_pred             -HHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhc----CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-----
Q 036290          667 -VDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRN----GYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHG-----  733 (796)
Q Consensus       667 -~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~----g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-----  733 (796)
                       .++++++..++.   ...|+ ...|+.+..++...    ++..+|.+.+.+. ...| +......|+..+....     
T Consensus       198 ~~e~el~y~~~aI---~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~  274 (320)
T PLN02789        198 MRDSELKYTIDAI---LANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAE  274 (320)
T ss_pred             cHHHHHHHHHHHH---HhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchh
Confidence             245666666665   44565 77777777777663    3456677777765 3344 4456677777776432     


Q ss_pred             -------------ChHHHHHHHHHHHccCC
Q 036290          734 -------------NKELGEWASEKLLLLLP  750 (796)
Q Consensus       734 -------------~~~~A~~~~~~~~~~~p  750 (796)
                                   ..++|.++++.+-+.||
T Consensus       275 ~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~  304 (320)
T PLN02789        275 FRDTVDTLAEELSDSTLAQAVCSELEVADP  304 (320)
T ss_pred             hhhhhhccccccccHHHHHHHHHHHHhhCc
Confidence                         23668888887766666

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.22  E-value=5.2e-05  Score=77.64  Aligned_cols=222  Identities=15%  Similarity=0.072  Sum_probs=140.5

Q ss_pred             HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 036290          525 VHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGAR  604 (796)
Q Consensus       525 ~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  604 (796)
                      .+.|+..+|.-.|+....+. +-+...|..|-......++-..|+..+.+..+.... +......|.-.|...|.-.+|+
T Consensus       296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al  373 (579)
T KOG1125|consen  296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQAL  373 (579)
T ss_pred             HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHH
Confidence            34455555555555544431 222334444444444445545555555554444333 4555556666666666666666


Q ss_pred             HHHhccCCCCChhHHHHHH---------HHHHhcCChHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 036290          605 MAFDQSFNSNDVIVYNTLI---------MAYAHHGLVSEAMEIFDK-MKLANLQPSQATFVSVMSACSHKGLVDKGCLLF  674 (796)
Q Consensus       605 ~~~~~~~~~~~~~~~~~li---------~~~~~~g~~~~A~~~~~~-m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~  674 (796)
                      +.+++.+...-...|....         ..+.....+....++|-+ ....+..+|......|--.|--.|.+++|...|
T Consensus       374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf  453 (579)
T KOG1125|consen  374 KMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF  453 (579)
T ss_pred             HHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence            6665543321110000000         111112223344444444 445554456666666666677889999999999


Q ss_pred             HHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 036290          675 KSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP-TVYRSLLSGCRIHGNKELGEWASEKLLLLLPK  751 (796)
Q Consensus       675 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  751 (796)
                      +.+.   .++|+ ...|+.|...++...+.++|++.|.++ .++|.. .++..|.-+|...|.+++|...+=.++.+.+.
T Consensus       454 ~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  454 EAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             HHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            9998   67887 788999999999999999999999988 788986 57888999999999999999999999887665

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.21  E-value=1.7e-05  Score=69.54  Aligned_cols=114  Identities=14%  Similarity=0.132  Sum_probs=87.9

Q ss_pred             HHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 036290          638 IFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP-SPDCYGCLVDMLSRNGYLEDAKHVIEIM-P  714 (796)
Q Consensus       638 ~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~  714 (796)
                      .+++...  ..| +......+...+...|++++|...++.+..   ..| +...+..+..++.+.|++++|...+++. .
T Consensus         5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~   79 (135)
T TIGR02552         5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA---YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA   79 (135)
T ss_pred             hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4555555  556 334455666778888999999999988873   345 4777888888999999999999888877 4


Q ss_pred             CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcce
Q 036290          715 FQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAH  756 (796)
Q Consensus       715 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  756 (796)
                      ..| +...+..+..++...|++++|...++++++.+|++....
T Consensus        80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  122 (135)
T TIGR02552        80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS  122 (135)
T ss_pred             cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence            444 557778888888899999999999999999999887643

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.19  E-value=0.00014  Score=67.38  Aligned_cols=153  Identities=18%  Similarity=0.155  Sum_probs=111.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc
Q 036290          588 SAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHK  664 (796)
Q Consensus       588 ~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~  664 (796)
                      ..+...+.-.|+-+....+..+....  .|.......+....+.|++..|...+++...  ..| |...|+.+--+|.+.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~  147 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQL  147 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHc
Confidence            44555566667777666666443333  2555666678888888888888888888877  444 777888888888888


Q ss_pred             CCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCChHHHHHH
Q 036290          665 GLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIMPFQ-P-SPTVYRSLLSGCRIHGNKELGEWA  741 (796)
Q Consensus       665 g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~  741 (796)
                      |+.+.|..-|.+..   .+.|+ +..++.|.-.|.-.|+.+.|..++...... + |..+-..+.-.....|++..|+.+
T Consensus       148 Gr~~~Ar~ay~qAl---~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i  224 (257)
T COG5010         148 GRFDEARRAYRQAL---ELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI  224 (257)
T ss_pred             cChhHHHHHHHHHH---HhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence            88888888888777   45665 677788888888888888888888877322 2 566667777777888888888887


Q ss_pred             HHHH
Q 036290          742 SEKL  745 (796)
Q Consensus       742 ~~~~  745 (796)
                      ...-
T Consensus       225 ~~~e  228 (257)
T COG5010         225 AVQE  228 (257)
T ss_pred             cccc
Confidence            6653

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.18  E-value=0.00016  Score=80.13  Aligned_cols=126  Identities=11%  Similarity=0.082  Sum_probs=63.4

Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHH
Q 036290          583 EVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQA-TFVSVMS  659 (796)
Q Consensus       583 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~  659 (796)
                      +...+..|.......|++++|..+++..+.. | +...+..+...+.+.+++++|+..+++...  ..|+.. ....+..
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~  162 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAK  162 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHH
Confidence            4455555555555555555555555433332 2 334444455555555555555555555555  344332 2333444


Q ss_pred             HHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          660 ACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       660 ~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      ++.+.|++++|..+|+++..   ..|+ ..++..+..++...|+.++|...|++.
T Consensus       163 ~l~~~g~~~~A~~~y~~~~~---~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a  214 (694)
T PRK15179        163 SWDEIGQSEQADACFERLSR---QHPEFENGYVGWAQSLTRRGALWRARDVLQAG  214 (694)
T ss_pred             HHHHhcchHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45555555555555555552   2333 445555555555555555555555554

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=0.005  Score=63.06  Aligned_cols=213  Identities=12%  Similarity=0.103  Sum_probs=100.9

Q ss_pred             HHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCC---HhhHH-------HHH
Q 036290          452 FYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLD---MASWG-------AMM  521 (796)
Q Consensus       452 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~-------~li  521 (796)
                      ..+.++..+..+++.+.+-+....+..  -+..-++....+|...|.+..+........+..   ..-|+       .+.
T Consensus       228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g  305 (539)
T KOG0548|consen  228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG  305 (539)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence            344455555555555655555555544  344445555556666665555544433322211   11122       123


Q ss_pred             HHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 036290          522 SALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIK  601 (796)
Q Consensus       522 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  601 (796)
                      .+|.+.++++.|...|++....-..|+..+         +....+.+........-.+...-. -...-...+.+.|++.
T Consensus       306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~~~pe~A~-e~r~kGne~Fk~gdy~  375 (539)
T KOG0548|consen  306 NAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKAYINPEKAE-EEREKGNEAFKKGDYP  375 (539)
T ss_pred             hhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHhhChhHHH-HHHHHHHHHHhccCHH
Confidence            355556777777777777554433443222         122222232222222222221100 1111133445556666


Q ss_pred             HHHHHHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhH
Q 036290          602 GARMAFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQ-ATFVSVMSACSHKGLVDKGCLLFKSMD  678 (796)
Q Consensus       602 ~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~A~~~~~~~~  678 (796)
                      .|...|.+++.. | |...|.....+|.+.|.+..|++-.+...+  +.|+. ..|..=..++....+|+.|.+.|++..
T Consensus       376 ~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~~mk~ydkAleay~eal  453 (539)
T KOG0548|consen  376 EAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL  453 (539)
T ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666555544 2 555666666666666666666666555555  34432 223333334444455666666665555

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.15  E-value=0.00024  Score=80.00  Aligned_cols=223  Identities=16%  Similarity=0.158  Sum_probs=99.3

Q ss_pred             hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHH
Q 036290          516 SWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDE-----YILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAV  590 (796)
Q Consensus       516 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  590 (796)
                      .|-..|....+.++.++|.++.++.... +.+..     ..|.++++.-..-|.-+...++|+++.+..-  ...+|..|
T Consensus      1460 ~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd--~~~V~~~L 1536 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD--AYTVHLKL 1536 (1710)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc--hHHHHHHH
Confidence            4444555555555555555555554332 11111     2333444433344444444455554444221  12344445


Q ss_pred             HHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhccC
Q 036290          591 IDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQAT---FVSVMSACSHKG  665 (796)
Q Consensus       591 i~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~g  665 (796)
                      ...|.+.+.+++|.++++.++++  .....|...+..+.++.+-+.|..++++..+  .-|....   ..-.+..-.+.|
T Consensus      1537 ~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~--~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALK--SLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred             HHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh--hcchhhhHHHHHHHHHHHhhcC
Confidence            55555555555555555444443  2444555555555555555555555555544  2232111   111222223445


Q ss_pred             CHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCH--HHHHHHHHHHHhcCChHHHH
Q 036290          666 LVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM---PFQPSP--TVYRSLLSGCRIHGNKELGE  739 (796)
Q Consensus       666 ~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~--~~~~~l~~~~~~~g~~~~A~  739 (796)
                      +.+++..+|+.....   .|- ...|+.+++.-.+.|+.+.+..+|++.   ++.|-.  ..|...+..-..+||-+.++
T Consensus      1615 DaeRGRtlfEgll~a---yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSA---YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred             CchhhHHHHHHHHhh---CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence            555555555555422   222 444555555555555555555555554   222221  33444444444445554444


Q ss_pred             HHHHHHH
Q 036290          740 WASEKLL  746 (796)
Q Consensus       740 ~~~~~~~  746 (796)
                      .+=.++.
T Consensus      1692 ~VKarA~ 1698 (1710)
T KOG1070|consen 1692 YVKARAK 1698 (1710)
T ss_pred             HHHHHHH
Confidence            4444443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.12  E-value=5.1e-05  Score=66.70  Aligned_cols=99  Identities=13%  Similarity=0.006  Sum_probs=75.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHH
Q 036290          619 YNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDM  696 (796)
Q Consensus       619 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~  696 (796)
                      +..+...+...|++++|...|++...  ..| +...|..+..++...|++++|...|+.+.   ...|+ +..+..+..+
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al---~l~p~~~~a~~~lg~~  101 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL---MLDASHPEPVYQTGVC  101 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH---hcCCCCcHHHHHHHHH
Confidence            44556677788888888888888877  556 66677778888888888888888888887   45665 7778888888


Q ss_pred             HHhcCChHHHHHHHHhC-CCCCCHHHH
Q 036290          697 LSRNGYLEDAKHVIEIM-PFQPSPTVY  722 (796)
Q Consensus       697 ~~~~g~~~~A~~~~~~~-~~~p~~~~~  722 (796)
                      +.+.|++++|++.+++. ...|+...|
T Consensus       102 l~~~g~~~eAi~~~~~Al~~~p~~~~~  128 (144)
T PRK15359        102 LKMMGEPGLAREAFQTAIKMSYADASW  128 (144)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence            88888888888888887 556654333

>PLN02789 farnesyltranstransferase

Probab=98.11  E-value=0.00016  Score=72.48  Aligned_cols=196  Identities=11%  Similarity=-0.018  Sum_probs=143.6

Q ss_pred             hccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCCh--HH
Q 036290          560 AAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCG-DIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLV--SE  634 (796)
Q Consensus       560 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~--~~  634 (796)
                      ...+..++|....+.+++.... +..+|+....++...| ++++++..+++.+..  .+...|+...-.+.+.|+.  ++
T Consensus        48 ~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~  126 (320)
T PLN02789         48 ASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK  126 (320)
T ss_pred             HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence            3445677888888888876554 4446666666667777 679999999666654  3666777666566666653  67


Q ss_pred             HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhc---CCh----HH
Q 036290          635 AMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRN---GYL----ED  705 (796)
Q Consensus       635 A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~---g~~----~~  705 (796)
                      ++.+++++.+  ..| |..+|.....++...|+++++++.++++.+.   .|+ ...|+....++.+.   |..    ++
T Consensus       127 el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~  201 (320)
T PLN02789        127 ELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDS  201 (320)
T ss_pred             HHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHH
Confidence            8999999998  667 7788999999999999999999999999843   444 66676666666554   323    45


Q ss_pred             HHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290          706 AKHVIEIM-PFQP-SPTVYRSLLSGCRIH----GNKELGEWASEKLLLLLPKNDAAHVLLSK  761 (796)
Q Consensus       706 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  761 (796)
                      +.++..++ ...| |...|+.+...+...    ++..+|...+.++++.+|+++.+...|+.
T Consensus       202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d  263 (320)
T PLN02789        202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLD  263 (320)
T ss_pred             HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHH
Confidence            66776454 5566 557898888888773    44567999999999999998888777755

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.11  E-value=0.00018  Score=70.00  Aligned_cols=183  Identities=13%  Similarity=0.066  Sum_probs=111.3

Q ss_pred             CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchh--
Q 036290          512 LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDE----YILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVY--  585 (796)
Q Consensus       512 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--  585 (796)
                      .....+..+...+.+.|++++|...|+++...  .|+.    ..+..+..++...|+++.|...++.+.+........  
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  108 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY  108 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence            45566777778888889999999999888665  3332    345666677778888888888888887755432221  


Q ss_pred             HHHHHHHHHHhc--------CCHHHHHHHHhccCCC-CCh-hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 036290          586 VASAVIDAYAKC--------GDIKGARMAFDQSFNS-NDV-IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFV  655 (796)
Q Consensus       586 ~~~~li~~~~~~--------g~~~~A~~~~~~~~~~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~  655 (796)
                      .+..+..++...        |+.++|.+.++..+.. |+. ..+..+..              +..+...   . .....
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~--------------~~~~~~~---~-~~~~~  170 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKR--------------MDYLRNR---L-AGKEL  170 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHH--------------HHHHHHH---H-HHHHH
Confidence            233333344332        4555555555333322 211 11111110              0000000   0 00012


Q ss_pred             HHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036290          656 SVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIMP  714 (796)
Q Consensus       656 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~  714 (796)
                      .+...+.+.|++++|...++.....+.-.|. ...+..++.++.+.|++++|.++++.+.
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~  230 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG  230 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3445678889999999999998855333333 5678889999999999999999888773

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.11  E-value=4.8e-06  Score=52.68  Aligned_cols=35  Identities=17%  Similarity=0.499  Sum_probs=31.7

Q ss_pred             chHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc
Q 036290          111 VSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNE  145 (796)
Q Consensus       111 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~  145 (796)
                      .+||++|++|++.|++++|.++|++|.+.|+.||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            47999999999999999999999999999999874

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.08  E-value=0.00017  Score=67.18  Aligned_cols=112  Identities=7%  Similarity=0.027  Sum_probs=85.3

Q ss_pred             cCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH-hccCC--HHHH
Q 036290          597 CGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSAC-SHKGL--VDKG  670 (796)
Q Consensus       597 ~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~-~~~g~--~~~A  670 (796)
                      .++.+++...++..+..  .+...|..+...|...|++++|...|++..+  +.| +...+..+..++ ...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence            45556666666555543  4778888888888889999999999988888  567 556666666654 56666  5889


Q ss_pred             HHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          671 CLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       671 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      .+++++..   ...|+ ...+..+...+.+.|++++|+..++++
T Consensus       130 ~~~l~~al---~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a  170 (198)
T PRK10370        130 REMIDKAL---ALDANEVTALMLLASDAFMQADYAQAIELWQKV  170 (198)
T ss_pred             HHHHHHHH---HhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99998888   45665 777888888888899999999999887

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.03  E-value=0.0034  Score=70.55  Aligned_cols=176  Identities=11%  Similarity=0.047  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhc
Q 036290          550 YILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHH  629 (796)
Q Consensus       550 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~  629 (796)
                      ..+..+..+|.+.|+.+++..+|+++.+... -++.+.|.+...|... ++++|.+++.            ..+..|...
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~KA~~m~~------------KAV~~~i~~  182 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEKAITYLK------------KAIYRFIKK  182 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHHHHHHHH------------HHHHHHHhh
Confidence            3566666677777777777777777777663 3677777777777777 7777777772            233335666


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHH---------------------HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-c
Q 036290          630 GLVSEAMEIFDKMKLANLQPSQAT---------------------FVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-P  687 (796)
Q Consensus       630 g~~~~A~~~~~~m~~~g~~p~~~t---------------------~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~  687 (796)
                      +++..+.++|.++.+  ..|+...                     +..+-..|...++|+++..+++.+.   ...|+ .
T Consensus       183 kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL---~~~~~n~  257 (906)
T PRK14720        183 KQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKIL---EHDNKNN  257 (906)
T ss_pred             hcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHH---hcCCcch
Confidence            677777777777766  3443222                     2222344455556666666666666   34444 3


Q ss_pred             hHHHHHHHHHHh-cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceE
Q 036290          688 DCYGCLVDMLSR-NGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHV  757 (796)
Q Consensus       688 ~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  757 (796)
                      ....-++.+|.. -++.....+.++.-++..             ...++..+..-|++.+-.+|++-..|.
T Consensus       258 ~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~-------------~~~~~~~~i~~fek~i~f~~G~yv~H~  315 (906)
T PRK14720        258 KAREELIRFYKEKYKDHSLLEDYLKMSDIGN-------------NRKPVKDCIADFEKNIVFDTGNFVYHR  315 (906)
T ss_pred             hhHHHHHHHHHHHccCcchHHHHHHHhcccc-------------CCccHHHHHHHHHHHeeecCCCEEEEc
Confidence            444444444431 111111111111111110             113457778888888888888777765

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.01  E-value=0.00024  Score=62.75  Aligned_cols=125  Identities=17%  Similarity=0.169  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC--chHHH
Q 036290          618 VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQ----ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS--PDCYG  691 (796)
Q Consensus       618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~  691 (796)
                      .|..++..+ ..++...+...++.+.+.  .|+.    .....+...+...|++++|...|+.+... ...|+  .....
T Consensus        14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l   89 (145)
T PF09976_consen   14 LYEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARL   89 (145)
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHH
Confidence            345555555 478888888888888884  3432    22334557788899999999999999855 32232  23455


Q ss_pred             HHHHHHHhcCChHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 036290          692 CLVDMLSRNGYLEDAKHVIEIMPFQ-PSPTVYRSLLSGCRIHGNKELGEWASEKLL  746 (796)
Q Consensus       692 ~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  746 (796)
                      .|..++...|++++|+..++..... ..+..+......+.+.|+.++|+..|++++
T Consensus        90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            6788889999999999999876322 244566777888999999999999998864

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.00  E-value=9.8e-06  Score=51.19  Aligned_cols=35  Identities=34%  Similarity=0.443  Sum_probs=31.9

Q ss_pred             eeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH
Q 036290          212 GCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDK  246 (796)
Q Consensus       212 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  246 (796)
                      .+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            37999999999999999999999999999999873

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.00  E-value=0.0024  Score=59.27  Aligned_cols=217  Identities=9%  Similarity=0.103  Sum_probs=140.8

Q ss_pred             HHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHH-HHHHHHHcCCCCCHHHHHHHHHHHhccCchH
Q 036290          488 SLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVT-IFHSLVEAGEKPDEYILGTILNSCAAIGAYQ  566 (796)
Q Consensus       488 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~  566 (796)
                      -+..+|...|++.....-...-..+.......+...+..-++.++-+. +.+.+.......+......-...|+..++++
T Consensus        46 y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~d  125 (299)
T KOG3081|consen   46 YMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFD  125 (299)
T ss_pred             HHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChH
Confidence            344556666665544333333332333333333333333444444433 3444444444444333334445688889999


Q ss_pred             HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHh----cCChHHHHHHHHHH
Q 036290          567 RTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAH----HGLVSEAMEIFDKM  642 (796)
Q Consensus       567 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m  642 (796)
                      .|.+......      +......=+..+.+..+++-|.+.++++..-.+-.+.+.|..++.+    .+....|.-+|++|
T Consensus       126 eAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~  199 (299)
T KOG3081|consen  126 EALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEEL  199 (299)
T ss_pred             HHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence            9988776521      2333333356677888999999999677666777888877777654    44689999999999


Q ss_pred             HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHH-HHHHhC
Q 036290          643 KLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAK-HVIEIM  713 (796)
Q Consensus       643 ~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~  713 (796)
                      -+. ..|+..+.+....++...|++++|..++++...+  -.-++.++..++-+-...|...++. +.+...
T Consensus       200 s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL  268 (299)
T KOG3081|consen  200 SEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLANLIVLALHLGKDAEVTERNLSQL  268 (299)
T ss_pred             hcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence            875 6789999999999999999999999999999844  2334777777777777778765544 455555

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.99  E-value=1e-05  Score=50.69  Aligned_cols=33  Identities=24%  Similarity=0.554  Sum_probs=28.3

Q ss_pred             chHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC
Q 036290          111 VSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMP  143 (796)
Q Consensus       111 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p  143 (796)
                      .+||.+|.+|++.|+++.|..+|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            578888888888888888888888888888877

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.97  E-value=0.0013  Score=74.44  Aligned_cols=215  Identities=10%  Similarity=0.072  Sum_probs=116.1

Q ss_pred             CchhHhHHHHHHHhcCCcchHHHHHhcCCC--------CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 036290          482 CGYICSSLIKSYVNFGQLDNSFEFSNGAER--------LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILG  553 (796)
Q Consensus       482 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~  553 (796)
                      +...|-..|......++.++|.+++++...        .-.-.|.++++.-...|.-+...++|++..+.  .-.-..|.
T Consensus      1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence            344455555555555566665555554432        12234555555555555555556666665543  12223455


Q ss_pred             HHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C---ChhHHHHHHHHHHhc
Q 036290          554 TILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N---DVIVYNTLIMAYAHH  629 (796)
Q Consensus       554 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~---~~~~~~~li~~~~~~  629 (796)
                      .|...|.+.+..+.|.++++.|.+.-- -...+|...++.+.+.++-+.|..++.+++.. |   .+......+..-.+.
T Consensus      1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence            556666666666666666666655311 34556666666666666666666666555443 2   333444444555566


Q ss_pred             CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC--chHHHHHHHHHHhcCC
Q 036290          630 GLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS--PDCYGCLVDMLSRNGY  702 (796)
Q Consensus       630 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~  702 (796)
                      |+.+++..+|+.....  .| ....|+..++.-.++|+.+.+..+|+++... ++.|-  ...|...+..--..|+
T Consensus      1614 GDaeRGRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l-~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL-KLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred             CCchhhHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc-CCChhHhHHHHHHHHHHHHhcCc
Confidence            6666666666666552  23 4455666666666666666666666666643 55444  2333333333333344

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.95  E-value=0.00018  Score=73.60  Aligned_cols=125  Identities=14%  Similarity=0.091  Sum_probs=88.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC
Q 036290          587 ASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKG  665 (796)
Q Consensus       587 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g  665 (796)
                      ...|+..+...++++.|..++ +.+...++.....+++.+...++-.+|.+++++..+  ..| +...+..-...|.+.+
T Consensus       172 v~~Ll~~l~~t~~~~~ai~ll-e~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~k~  248 (395)
T PF09295_consen  172 VDTLLKYLSLTQRYDEAIELL-EKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLSKK  248 (395)
T ss_pred             HHHHHHHHhhcccHHHHHHHH-HHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcC
Confidence            344555556667777777777 444444444555677777777777888888888776  345 5455555556677888


Q ss_pred             CHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 036290          666 LVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIMPFQP  717 (796)
Q Consensus       666 ~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p  717 (796)
                      +++.|+++.+++.   ...|+ ..+|..|+.+|.+.|++++|+..++.++..|
T Consensus       249 ~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~  298 (395)
T PF09295_consen  249 KYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT  298 (395)
T ss_pred             CHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence            8888888888887   56777 6688888888888888888888888886444

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.95  E-value=0.0037  Score=57.62  Aligned_cols=182  Identities=14%  Similarity=0.144  Sum_probs=98.1

Q ss_pred             cCChhHHHHHHHHHHH---cC-CCCCHHH-HHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 036290          527 QGHNHEAVTIFHSLVE---AG-EKPDEYI-LGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIK  601 (796)
Q Consensus       527 ~~~~~~A~~~~~~m~~---~g-~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  601 (796)
                      ..+.++.++++.++..   .| ..|+..+ |..++-+....|+.+.|...++.+.+.- +-+..+-..-.-.+-..|+++
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~  103 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK  103 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence            3456666666666632   33 4455443 3445555666677777777777766543 222222222233344556666


Q ss_pred             HHHHHHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHh
Q 036290          602 GARMAFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDS  679 (796)
Q Consensus       602 ~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~  679 (796)
                      +|.++++..+.. | |..++---+......|+.-+|++-+.+..+. +..|...|.-+..-|...|+++.|.-.++++. 
T Consensus       104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l-  181 (289)
T KOG3060|consen  104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL-  181 (289)
T ss_pred             hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH-
Confidence            666666544443 2 4445554455555555555666555555552 23366666666666666666666666666665 


Q ss_pred             hcCCCCC-chHHHHHHHHHHhcC---ChHHHHHHHHhC
Q 036290          680 QYGMQPS-PDCYGCLVDMLSRNG---YLEDAKHVIEIM  713 (796)
Q Consensus       680 ~~~~~p~-~~~~~~l~~~~~~~g---~~~~A~~~~~~~  713 (796)
                        -+.|- +..+..+.+.+.-.|   +.+-|.+++.+.
T Consensus       182 --l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a  217 (289)
T KOG3060|consen  182 --LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA  217 (289)
T ss_pred             --HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence              34454 444445555554443   344455555554

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.94  E-value=0.054  Score=59.31  Aligned_cols=25  Identities=12%  Similarity=0.081  Sum_probs=15.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhCC
Q 036290          690 YGCLVDMLSRNGYLEDAKHVIEIMP  714 (796)
Q Consensus       690 ~~~l~~~~~~~g~~~~A~~~~~~~~  714 (796)
                      -+..++.+...++.++-...++.|.
T Consensus       582 E~~~l~ll~~~~~~~q~~~~~~~~~  606 (932)
T KOG2053|consen  582 ENLQLSLLCNADRGTQLLKLLESMK  606 (932)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHhccc
Confidence            3445555666666666666666664

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.93  E-value=1.4e-05  Score=49.97  Aligned_cols=33  Identities=24%  Similarity=0.318  Sum_probs=29.3

Q ss_pred             eeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 036290          212 GCWNAMIGGYAHCGYGFEALNVVSSMLFEGITM  244 (796)
Q Consensus       212 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  244 (796)
                      .+||.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            578999999999999999999999999888887

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.92  E-value=0.0032  Score=63.84  Aligned_cols=129  Identities=15%  Similarity=0.141  Sum_probs=88.5

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCC
Q 036290          625 AYAHHGLVSEAMEIFDKMKLANLQPSQATFV-SVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGY  702 (796)
Q Consensus       625 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~  702 (796)
                      .+...|++++|+..++.+..  -.|+..-|. ....-+...++.++|.+.++.+.   ...|+ ....-.+..+|.+.|+
T Consensus       315 ~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~all~~g~  389 (484)
T COG4783         315 QTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLAQALLKGGK  389 (484)
T ss_pred             HHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHHHHHHhcCC
Confidence            34456778888888888777  456544443 44466777888888888888877   45676 5555567778888888


Q ss_pred             hHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEE
Q 036290          703 LEDAKHVIEIM--PFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVL  758 (796)
Q Consensus       703 ~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  758 (796)
                      +.+|+..+++.  ..+-|+..|..|..+|...|+..++....-+...+..+-..+...
T Consensus       390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~  447 (484)
T COG4783         390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIF  447 (484)
T ss_pred             hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHH
Confidence            88888888777  334466778888888888887777777777666655544433333

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.91  E-value=0.00087  Score=62.22  Aligned_cols=163  Identities=12%  Similarity=0.095  Sum_probs=121.0

Q ss_pred             CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHH
Q 036290          546 KPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLI  623 (796)
Q Consensus       546 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li  623 (796)
                      .|+......+-.++...|+-+....+...... ...-|.......+....+.|++.+|...+.+....  +|...|+.+.
T Consensus        63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg  141 (257)
T COG5010          63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG  141 (257)
T ss_pred             CcchHHHHHHHHHHHhcccccchHHHHhhhhc-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHH
Confidence            44333323334445555555555444433222 12225556666888899999999999999665543  5889999999


Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCC
Q 036290          624 MAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGY  702 (796)
Q Consensus       624 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  702 (796)
                      -+|.+.|+++.|..-|.+..+  +.| +...++.+...+.-.|+++.|..++......  -.-|..+-..+.......|+
T Consensus       142 aaldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~  217 (257)
T COG5010         142 AALDQLGRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGD  217 (257)
T ss_pred             HHHHHccChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCC
Confidence            999999999999999999999  777 5566888888899999999999999988733  22256677788999999999


Q ss_pred             hHHHHHHHHhC
Q 036290          703 LEDAKHVIEIM  713 (796)
Q Consensus       703 ~~~A~~~~~~~  713 (796)
                      +++|..+...-
T Consensus       218 ~~~A~~i~~~e  228 (257)
T COG5010         218 FREAEDIAVQE  228 (257)
T ss_pred             hHHHHhhcccc
Confidence            99999988665

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.91  E-value=0.0017  Score=59.73  Aligned_cols=193  Identities=18%  Similarity=0.172  Sum_probs=137.0

Q ss_pred             CchHHHHHHHHHHHH---hC-CCCchh-HHHHHHHHHHhcCCHHHHHHHHhccCCC-CCh-hHHHHHHHHHHhcCChHHH
Q 036290          563 GAYQRTKSIHPFVIK---LG-FNTEVY-VASAVIDAYAKCGDIKGARMAFDQSFNS-NDV-IVYNTLIMAYAHHGLVSEA  635 (796)
Q Consensus       563 ~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~-~~~~~li~~~~~~g~~~~A  635 (796)
                      .+.+...+++..+..   .| ..++.. +|..++-+....|+.+.|...+++...+ |.. ..-..-...+...|++++|
T Consensus        26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A  105 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA  105 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence            355666666666654   23 444443 4455666777889999998888432222 322 2222222335668999999


Q ss_pred             HHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-
Q 036290          636 MEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-  713 (796)
Q Consensus       636 ~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-  713 (796)
                      +++++.+.+..  | |.+++..-+-..-..|+--+|++-+....+.  +..|...|.-+...|...|++++|.--++++ 
T Consensus       106 ~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l  181 (289)
T KOG3060|consen  106 IEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL  181 (289)
T ss_pred             HHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            99999999854  5 7778877666677788888888888887744  5677999999999999999999999999998 


Q ss_pred             CCCCCH-HHHHHHHHHHHhcC---ChHHHHHHHHHHHccCCCCCcceEEe
Q 036290          714 PFQPSP-TVYRSLLSGCRIHG---NKELGEWASEKLLLLLPKNDAAHVLL  759 (796)
Q Consensus       714 ~~~p~~-~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~l  759 (796)
                      -..|-. ..+..+...+...|   +.+.|+..++++++++|.+..++..+
T Consensus       182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI  231 (289)
T KOG3060|consen  182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI  231 (289)
T ss_pred             HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence            456644 44556666654443   78899999999999999777666433

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.90  E-value=0.00066  Score=76.08  Aligned_cols=212  Identities=10%  Similarity=0.087  Sum_probs=143.3

Q ss_pred             CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH-HHhccCchHHHHHHHHHHHHhCCCCchhHHHHH
Q 036290          512 LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILN-SCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAV  590 (796)
Q Consensus       512 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  590 (796)
                      .+...|..|+..+...+++++|.++.++..+.  .|+...+-.+.. .+.+.++.+.+.-+                 .+
T Consensus        29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~   89 (906)
T PRK14720         29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL   89 (906)
T ss_pred             chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence            45667889999999999999999999976654  666554433332 34455554444333                 22


Q ss_pred             HHHHHhcCCHHHHHHHHhccCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHH
Q 036290          591 IDAYAKCGDIKGARMAFDQSFNS-NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVD  668 (796)
Q Consensus       591 i~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~  668 (796)
                      ++......++.-+..+...+..- .+...+..+..+|.+.|+.++|..+|+++.+  +.| |....|.+...|+.. +++
T Consensus        90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~--~D~~n~~aLNn~AY~~ae~-dL~  166 (906)
T PRK14720         90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK--ADRDNPEIVKKLATSYEEE-DKE  166 (906)
T ss_pred             hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHh-hHH
Confidence            33333333342222222112222 2445778889999999999999999999999  557 778889999999888 999


Q ss_pred             HHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---------------------HHHHHHHH
Q 036290          669 KGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS---------------------PTVYRSLL  726 (796)
Q Consensus       669 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---------------------~~~~~~l~  726 (796)
                      +|.+++.++...                +...+++.++.++++++ ...|+                     ..++.-+-
T Consensus       167 KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~  230 (906)
T PRK14720        167 KAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLY  230 (906)
T ss_pred             HHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHH
Confidence            999999888743                44445666666666555 12222                     23344444


Q ss_pred             HHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290          727 SGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK  761 (796)
Q Consensus       727 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  761 (796)
                      ..|.+.++++++..+++.+++.+|.|..+..-|+.
T Consensus       231 ~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~  265 (906)
T PRK14720        231 EPYKALEDWDEVIYILKKILEHDNKNNKAREELIR  265 (906)
T ss_pred             HHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHH
Confidence            66777889999999999999999998887544433

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.88  E-value=0.00062  Score=75.58  Aligned_cols=178  Identities=8%  Similarity=0.042  Sum_probs=136.7

Q ss_pred             HHHcCChhHHHHHH---HHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 036290          524 LVHQGHNHEAVTIF---HSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDI  600 (796)
Q Consensus       524 ~~~~~~~~~A~~~~---~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  600 (796)
                      .-+++....+..-+   ..... ....+...+..|.....+.|.+++|..+++...+..+. +......+...+.+.+++
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~  136 (694)
T PRK15179         59 LERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGI  136 (694)
T ss_pred             HHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccH
Confidence            33444444444444   33333 35666888889999999999999999999999887665 566777788999999999


Q ss_pred             HHHHHHHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 036290          601 KGARMAFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSM  677 (796)
Q Consensus       601 ~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~  677 (796)
                      ++|+..+++.+.. | +......+..++.+.|++++|..+|++...  ..| +..++..+..++...|+.++|...|+..
T Consensus       137 eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a  214 (694)
T PRK15179        137 EAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAG  214 (694)
T ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999777775 3 667788888999999999999999999998  345 4778889999999999999999999999


Q ss_pred             HhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          678 DSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       678 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      ...  ..|....|+.++      +++..-..+++++
T Consensus       215 ~~~--~~~~~~~~~~~~------~~~~~~~~~~~~~  242 (694)
T PRK15179        215 LDA--IGDGARKLTRRL------VDLNADLAALRRL  242 (694)
T ss_pred             HHh--hCcchHHHHHHH------HHHHHHHHHHHHc
Confidence            844  334444544332      4445556677777

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.84  E-value=0.0002  Score=61.02  Aligned_cols=103  Identities=17%  Similarity=0.172  Sum_probs=69.9

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHH
Q 036290          653 TFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS----PTVYRSLL  726 (796)
Q Consensus       653 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~  726 (796)
                      ++..+...+...|++++|.+.|+.+...+.-.|. ...+..++.++.+.|++++|.+.++++ ...|+    ...+..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            4455566667777788888877777744211111 345566777788888888888888776 33333    34567777


Q ss_pred             HHHHhcCChHHHHHHHHHHHccCCCCCcc
Q 036290          727 SGCRIHGNKELGEWASEKLLLLLPKNDAA  755 (796)
Q Consensus       727 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  755 (796)
                      .++.+.|+.++|...++++++..|+++.+
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  112 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKRYPGSSAA  112 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence            77788888888888888888888876654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.83  E-value=4.8e-05  Score=71.76  Aligned_cols=133  Identities=17%  Similarity=0.154  Sum_probs=97.0

Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcC
Q 036290          624 MAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNG  701 (796)
Q Consensus       624 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g  701 (796)
                      .-+.+.+++++|+..|.+.++  +.| |.+-|..-..+|.+.|.++.|++-.+...   .+.|. ..+|..|..+|...|
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g  163 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG  163 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence            446788899999999999998  778 55566777888999999999999888877   67787 788999999999999


Q ss_pred             ChHHHHHHHHhC-CCCCCHHHHHHHHHH-HHhcCChH---HHHHHHHHHHcc--CCCCCcceE-EecC
Q 036290          702 YLEDAKHVIEIM-PFQPSPTVYRSLLSG-CRIHGNKE---LGEWASEKLLLL--LPKNDAAHV-LLSK  761 (796)
Q Consensus       702 ~~~~A~~~~~~~-~~~p~~~~~~~l~~~-~~~~g~~~---~A~~~~~~~~~~--~p~~~~~~~-~l~~  761 (796)
                      ++++|++.|++. .+.|+..+|..=+.. -.+.+..+   .+...++..-.+  .|+....+. -|-+
T Consensus       164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s~~~~~l~n  231 (304)
T KOG0553|consen  164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRSMFNGDLMN  231 (304)
T ss_pred             cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchhhhcccccc
Confidence            999999998887 788888777544444 33334433   444444433332  255555554 5555

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.75  E-value=0.0028  Score=64.20  Aligned_cols=108  Identities=13%  Similarity=0.091  Sum_probs=47.7

Q ss_pred             cCCHHHHHHHHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHH
Q 036290          597 CGDIKGARMAFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPS-QATFVSVMSACSHKGLVDKGCLL  673 (796)
Q Consensus       597 ~g~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~A~~~  673 (796)
                      .|++++|+..++..+.. | |+..+......+...++..+|.+.++++..  ..|+ ......+..++.+.|++.+|+.+
T Consensus       319 ~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~eai~~  396 (484)
T COG4783         319 AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQEAIRI  396 (484)
T ss_pred             hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChHHHHHH
Confidence            34444444444333322 2 333334444444555555555555555544  3443 22233344445555555555555


Q ss_pred             HHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHH
Q 036290          674 FKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKH  708 (796)
Q Consensus       674 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~  708 (796)
                      ++.....  .+-|+..|..|..+|...|+..+|..
T Consensus       397 L~~~~~~--~p~dp~~w~~LAqay~~~g~~~~a~~  429 (484)
T COG4783         397 LNRYLFN--DPEDPNGWDLLAQAYAELGNRAEALL  429 (484)
T ss_pred             HHHHhhc--CCCCchHHHHHHHHHHHhCchHHHHH
Confidence            5444411  12224455555555555554444443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.75  E-value=0.00049  Score=60.15  Aligned_cols=102  Identities=14%  Similarity=0.221  Sum_probs=71.6

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHH
Q 036290          615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGC  692 (796)
Q Consensus       615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~  692 (796)
                      +......+...+...|++++|.+.+++...  ..| +...+..+...+...|++++|..+++...   ...|+ ...+..
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~---~~~p~~~~~~~~   90 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAA---ALDPDDPRPYFH   90 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCChHHHHH
Confidence            344455666667777888888888888777  335 55666677777778888888888888776   33444 666777


Q ss_pred             HHHHHHhcCChHHHHHHHHhC-CCCCCHHH
Q 036290          693 LVDMLSRNGYLEDAKHVIEIM-PFQPSPTV  721 (796)
Q Consensus       693 l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~  721 (796)
                      +..++...|++++|.+.+++. ...|+...
T Consensus        91 la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        91 AAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence            778888888888888888776 44555443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.75  E-value=0.0006  Score=73.30  Aligned_cols=141  Identities=13%  Similarity=0.076  Sum_probs=101.3

Q ss_pred             CChhHHHHHHHHHHh--cC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcc--------CCHHHHHHHHHHhHh
Q 036290          614 NDVIVYNTLIMAYAH--HG---LVSEAMEIFDKMKLANLQPSQ-ATFVSVMSACSHK--------GLVDKGCLLFKSMDS  679 (796)
Q Consensus       614 ~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~--------g~~~~A~~~~~~~~~  679 (796)
                      .+...|...+++...  .+   +.+.|..+|++..+  ..|+. ..|..+..++...        +++..+.+..++...
T Consensus       335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a  412 (517)
T PRK10153        335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA  412 (517)
T ss_pred             CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence            466777777776443  22   36789999999998  77854 3444443333221        123444555554432


Q ss_pred             hcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcce
Q 036290          680 QYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAH  756 (796)
Q Consensus       680 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  756 (796)
                      ......++..|..+.-.+...|++++|...++++ ...|+...|..+...+...|+.++|...++++++++|.+++.|
T Consensus       413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~  490 (517)
T PRK10153        413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLY  490 (517)
T ss_pred             cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHH
Confidence            2123334677888877777889999999999998 6778888899999999999999999999999999999988643

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.73  E-value=0.00028  Score=66.68  Aligned_cols=94  Identities=15%  Similarity=0.219  Sum_probs=69.5

Q ss_pred             HHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHH
Q 036290          594 YAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKG  670 (796)
Q Consensus       594 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A  670 (796)
                      +.+.+++.+|+..|.+.+.-  .|.+.|..-..+|.+.|.++.|++-.+..+.  +.| -..+|..|-.+|...|++++|
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~A  168 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEEA  168 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHHH
Confidence            55677788888888776664  3677777777788888888888887777777  667 445777888888888888888


Q ss_pred             HHHHHHhHhhcCCCCCchHHHH
Q 036290          671 CLLFKSMDSQYGMQPSPDCYGC  692 (796)
Q Consensus       671 ~~~~~~~~~~~~~~p~~~~~~~  692 (796)
                      ++.|++..   .+.|+-.+|..
T Consensus       169 ~~aykKaL---eldP~Ne~~K~  187 (304)
T KOG0553|consen  169 IEAYKKAL---ELDPDNESYKS  187 (304)
T ss_pred             HHHHHhhh---ccCCCcHHHHH
Confidence            88877776   67777655543

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.71  E-value=4.3e-05  Score=46.54  Aligned_cols=31  Identities=23%  Similarity=0.592  Sum_probs=24.4

Q ss_pred             chHHHHHHHHHhcCCchHHHHHHHHHHHCCC
Q 036290          111 VSWTLIVSAAIQNGEFDMGLKMYVDMKTNGF  141 (796)
Q Consensus       111 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~  141 (796)
                      ++||.||++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            4688888888888888888888888877664

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.64  E-value=0.079  Score=53.18  Aligned_cols=108  Identities=19%  Similarity=0.261  Sum_probs=73.2

Q ss_pred             hhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 036290          484 YICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIG  563 (796)
Q Consensus       484 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~  563 (796)
                      .+.+..+.-+...|+...|.++-....-|+...|-..+.+++..++|++-.++-..      +-++..|..++.+|.+.|
T Consensus       178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~  251 (319)
T PF04840_consen  178 LSLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYG  251 (319)
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCC
Confidence            34455566666777777788877777777778888888888888888766654322      223467777777777777


Q ss_pred             chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 036290          564 AYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAF  607 (796)
Q Consensus       564 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  607 (796)
                      +...|..+...+          .+..-+.+|.++|++.+|.+.-
T Consensus       252 ~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A  285 (319)
T PF04840_consen  252 NKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA  285 (319)
T ss_pred             CHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence            777777766551          1245567777777777776643

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.63  E-value=0.0014  Score=57.79  Aligned_cols=113  Identities=16%  Similarity=0.113  Sum_probs=77.7

Q ss_pred             cCCHHHHHHHHhccCCC-CCh----hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHH
Q 036290          597 CGDIKGARMAFDQSFNS-NDV----IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQ--ATFVSVMSACSHKGLVDK  669 (796)
Q Consensus       597 ~g~~~~A~~~~~~~~~~-~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~  669 (796)
                      .++...+...++..... |+.    ...-.+...+...|++++|...|+...+....|+.  .....+...+...|++++
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~  103 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE  103 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            55666665555333333 211    22334556778889999999999999886533322  234456778888999999


Q ss_pred             HHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHh
Q 036290          670 GCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEI  712 (796)
Q Consensus       670 A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  712 (796)
                      |+..++...   +-...+..+....++|.+.|++++|...|++
T Consensus       104 Al~~L~~~~---~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen  104 ALATLQQIP---DEAFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHhcc---CcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            999997754   2233456777889999999999999998875

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.61  E-value=0.0013  Score=67.42  Aligned_cols=133  Identities=16%  Similarity=0.106  Sum_probs=106.0

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHH
Q 036290          617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDM  696 (796)
Q Consensus       617 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~  696 (796)
                      ..-..|+..+...++++.|..+++++.+.  .|+..  ..+++.+...++-.+|.+++++..+.  .+-+...+..-++.
T Consensus       170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~--~pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~f  243 (395)
T PF09295_consen  170 YLVDTLLKYLSLTQRYDEAIELLEKLRER--DPEVA--VLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEF  243 (395)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHhc--CCcHH--HHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence            34456677778889999999999999984  47643  34677777788889999999998844  23346777777888


Q ss_pred             HHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcc
Q 036290          697 LSRNGYLEDAKHVIEIM-PFQPS-PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAA  755 (796)
Q Consensus       697 ~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  755 (796)
                      +.+.|+++.|.++.+++ ...|+ ..+|..|..+|.+.|+++.|...++.+--..+++...
T Consensus       244 Ll~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~k~~  304 (395)
T PF09295_consen  244 LLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTYKDKYK  304 (395)
T ss_pred             HHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCccchh
Confidence            99999999999999999 66775 4699999999999999999999998776554444333

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.59  E-value=0.19  Score=55.38  Aligned_cols=159  Identities=9%  Similarity=0.091  Sum_probs=91.0

Q ss_pred             HHHHHHHhcccCcHHHHHHHHHHHHHhCC---CCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHh--hHHHH-HHHH
Q 036290          451 FFYVVETCCRSENQQMVGQIHGAIIKTGF---SSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMA--SWGAM-MSAL  524 (796)
Q Consensus       451 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l-i~~~  524 (796)
                      .+.++..+.+.++.....+.+--+ +.|.   +.+..+--.++..|+-.|-+..|.++++.+.-+++.  |...+ ..-+
T Consensus       439 v~~Lid~~rktnd~~~l~eaI~LL-E~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~  517 (932)
T KOG2053|consen  439 VNHLIDLWRKTNDLTDLFEAITLL-ENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRA  517 (932)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHH-HHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHH
Confidence            456667788888766433333222 2232   445566667899999999999999999988653322  22222 2344


Q ss_pred             HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHH---HHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 036290          525 VHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHP---FVIKLGFNTEVYVASAVIDAYAKCGDIK  601 (796)
Q Consensus       525 ~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~~~~~li~~~~~~g~~~  601 (796)
                      ...|++..+...++....---.--..+-. .|....+.|.+....+...   ++..........+-+..++..+..++.+
T Consensus       518 ~t~g~~~~~s~~~~~~lkfy~~~~kE~~e-yI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~  596 (932)
T KOG2053|consen  518 ETSGRSSFASNTFNEHLKFYDSSLKETPE-YIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGT  596 (932)
T ss_pred             HhcccchhHHHHHHHHHHHHhhhhhhhHH-HHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence            45677777777766543211000111112 2222335565555554433   3333323334455667788888899998


Q ss_pred             HHHHHHhccCC
Q 036290          602 GARMAFDQSFN  612 (796)
Q Consensus       602 ~A~~~~~~~~~  612 (796)
                      +-...+ ..++
T Consensus       597 q~~~~~-~~~~  606 (932)
T KOG2053|consen  597 QLLKLL-ESMK  606 (932)
T ss_pred             HHHHHH-hccc
Confidence            888888 4443

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.58  E-value=0.13  Score=53.23  Aligned_cols=133  Identities=14%  Similarity=0.116  Sum_probs=107.6

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHH
Q 036290          615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCL  693 (796)
Q Consensus       615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l  693 (796)
                      -..+|..+++.-.+..-...|..+|.+..+.+..+ +...+.+++.-++ .++.+.|..+|+.=.+.+|-.  +.--...
T Consensus       365 ~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~--p~yv~~Y  441 (656)
T KOG1914|consen  365 LTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDS--PEYVLKY  441 (656)
T ss_pred             CceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCC--hHHHHHH
Confidence            44678888888888888999999999999988888 7777888887665 578999999999877554433  3344466


Q ss_pred             HHHHHhcCChHHHHHHHHhC---CCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 036290          694 VDMLSRNGYLEDAKHVIEIM---PFQPSP--TVYRSLLSGCRIHGNKELGEWASEKLLLLLP  750 (796)
Q Consensus       694 ~~~~~~~g~~~~A~~~~~~~---~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  750 (796)
                      ++-+..-++-..|..+|++.   +..|+.  .+|..++.--..-||...+..+-++....-|
T Consensus       442 ldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~  503 (656)
T KOG1914|consen  442 LDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP  503 (656)
T ss_pred             HHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence            77788889999999999998   244543  7899999999999999999999998887766

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.57  E-value=8.8e-05  Score=45.13  Aligned_cols=31  Identities=39%  Similarity=0.507  Sum_probs=25.4

Q ss_pred             eeHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 036290          212 GCWNAMIGGYAHCGYGFEALNVVSSMLFEGI  242 (796)
Q Consensus       212 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  242 (796)
                      ++||++|.+|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            4688888888888888888888888887764

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.57  E-value=0.00067  Score=54.74  Aligned_cols=93  Identities=23%  Similarity=0.198  Sum_probs=58.0

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 036290          655 VSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRI  731 (796)
Q Consensus       655 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~  731 (796)
                      ..+...+...|++++|...++.+.   ...|+ ...+..+..++...|++++|.+.+++. ...| +..++..+...+..
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (100)
T cd00189           4 LNLGNLYYKLGDYDEALEYYEKAL---ELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHH---hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence            334445555666666666666665   22333 345556666666667777777776665 2233 33466667777777


Q ss_pred             cCChHHHHHHHHHHHccCC
Q 036290          732 HGNKELGEWASEKLLLLLP  750 (796)
Q Consensus       732 ~g~~~~A~~~~~~~~~~~p  750 (796)
                      .|+.+.|...++++++..|
T Consensus        81 ~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          81 LGKYEEALEAYEKALELDP   99 (100)
T ss_pred             HHhHHHHHHHHHHHHccCC
Confidence            7777777777777777666

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.56  E-value=0.00025  Score=52.46  Aligned_cols=61  Identities=23%  Similarity=0.195  Sum_probs=50.8

Q ss_pred             HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 036290          693 LVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKND  753 (796)
Q Consensus       693 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  753 (796)
                      +...+...|++++|.+.+++. ...| +...|..+..++...|++++|...++++++.+|+++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            567788999999999999988 5556 456888889999999999999999999999999875

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.55  E-value=0.12  Score=51.94  Aligned_cols=123  Identities=16%  Similarity=0.144  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036290          586 VASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKG  665 (796)
Q Consensus       586 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g  665 (796)
                      +.+..+.-+...|+...|.++. ...+-|+...|...+.+++..++|++-.++...    .-  ++.-|..++.+|.+.|
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~-k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~  251 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLK-KEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYG  251 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHH-HHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCC
Confidence            4445566667788888888887 777888999999999999999999887665432    22  3366888889999999


Q ss_pred             CHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 036290          666 LVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGC  729 (796)
Q Consensus       666 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~  729 (796)
                      +..+|..+...+.           +..-+..|.+.|++.+|.+.--+.+   |...+..+...+
T Consensus       252 ~~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~  301 (319)
T PF04840_consen  252 NKKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC  301 (319)
T ss_pred             CHHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence            9999888886632           2556788889999999988876654   444444444433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.49  E-value=0.00023  Score=55.93  Aligned_cols=76  Identities=22%  Similarity=0.334  Sum_probs=34.9

Q ss_pred             CChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHH
Q 036290          630 GLVSEAMEIFDKMKLANLQP---SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLED  705 (796)
Q Consensus       630 g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~  705 (796)
                      |+++.|+.+++++.+.  .|   +...+..+..++.+.|++++|..+++. .   ...|+ ......++.++.+.|++++
T Consensus         3 ~~y~~Ai~~~~k~~~~--~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~e   76 (84)
T PF12895_consen    3 GNYENAIKYYEKLLEL--DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEE   76 (84)
T ss_dssp             T-HHHHHHHHHHHHHH--HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred             ccHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHH
Confidence            4555555555555552  23   222333345555555555555555554 1   22222 2333334555555555555


Q ss_pred             HHHHHH
Q 036290          706 AKHVIE  711 (796)
Q Consensus       706 A~~~~~  711 (796)
                      |++.++
T Consensus        77 Ai~~l~   82 (84)
T PF12895_consen   77 AIKALE   82 (84)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            555554

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.46  E-value=0.00053  Score=70.65  Aligned_cols=99  Identities=13%  Similarity=0.113  Sum_probs=71.5

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhc
Q 036290          623 IMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRN  700 (796)
Q Consensus       623 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~  700 (796)
                      ...+...|++++|+..|++..+  ..| +...|..+..+|...|++++|+..++++.   .+.|+ ...|..+..+|...
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al---~l~P~~~~a~~~lg~~~~~l   83 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAI---ELDPSLAKAYLRKGTACMKL   83 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcCCHHHHHHHHHHHHHh
Confidence            4456677888888888888887  556 55567777777888888888888888887   45665 66777788888888


Q ss_pred             CChHHHHHHHHhC-CCCCCHHHHHHHH
Q 036290          701 GYLEDAKHVIEIM-PFQPSPTVYRSLL  726 (796)
Q Consensus       701 g~~~~A~~~~~~~-~~~p~~~~~~~l~  726 (796)
                      |++++|++.+++. ...|+......++
T Consensus        84 g~~~eA~~~~~~al~l~P~~~~~~~~l  110 (356)
T PLN03088         84 EEYQTAKAALEKGASLAPGDSRFTKLI  110 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            8888888888776 4556544443333

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.42  E-value=0.0034  Score=62.24  Aligned_cols=137  Identities=12%  Similarity=0.177  Sum_probs=102.4

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHH
Q 036290          617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSA-CSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVD  695 (796)
Q Consensus       617 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~  695 (796)
                      .+|..+++...+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+.  +..+...|...++
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~   78 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD   78 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence            468888898889888999999999998532 2234445444433 33356777899999999866  3445677888899


Q ss_pred             HHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcce
Q 036290          696 MLSRNGYLEDAKHVIEIM-PFQPSP----TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAH  756 (796)
Q Consensus       696 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  756 (796)
                      .+.+.|+.+.|..+|++. ..-|..    ..|...+.--.+.|+.+....+.+++.+.-|++....
T Consensus        79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~  144 (280)
T PF05843_consen   79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLE  144 (280)
T ss_dssp             HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHH
T ss_pred             HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHH
Confidence            999999999999999998 333333    5899999999999999999999999999988855443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.40  E-value=0.0059  Score=52.84  Aligned_cols=92  Identities=7%  Similarity=0.054  Sum_probs=63.3

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHH
Q 036290          617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPS-QATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLV  694 (796)
Q Consensus       617 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~  694 (796)
                      ...-.+...+...|++++|.++|+-+..  +.|. ..-|..|.-+|-..|++++|+..|....   -+.|| +..+..+.
T Consensus        36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~---~L~~ddp~~~~~ag  110 (157)
T PRK15363         36 NTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA---QIKIDAPQAPWAAA  110 (157)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH---hcCCCCchHHHHHH
Confidence            3344555556677777888777777777  6673 3445555566667777888888877776   44555 67777777


Q ss_pred             HHHHhcCChHHHHHHHHhC
Q 036290          695 DMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       695 ~~~~~~g~~~~A~~~~~~~  713 (796)
                      .++...|+.+.|.+-|+..
T Consensus       111 ~c~L~lG~~~~A~~aF~~A  129 (157)
T PRK15363        111 ECYLACDNVCYAIKALKAV  129 (157)
T ss_pred             HHHHHcCCHHHHHHHHHHH
Confidence            7777888888777777755

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.39  E-value=0.012  Score=58.77  Aligned_cols=142  Identities=16%  Similarity=0.202  Sum_probs=76.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhc-CChHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHH
Q 036290          589 AVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHH-GLVSEAMEIFDKMKLA----NLQP--SQATFVSVMSAC  661 (796)
Q Consensus       589 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----g~~p--~~~t~~~ll~~~  661 (796)
                      ..+..|...|++..|-+.+            ..+...|... |+++.|++.|++..+.    | .+  -..++..+...+
T Consensus        99 ~A~~~y~~~G~~~~aA~~~------------~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~  165 (282)
T PF14938_consen   99 KAIEIYREAGRFSQAAKCL------------KELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLY  165 (282)
T ss_dssp             HHHHHHHHCT-HHHHHHHH------------HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcHHHHHHHH------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHH
Confidence            3455677777777776666            4566666666 7888888887776542    2 12  123355566677


Q ss_pred             hccCCHHHHHHHHHHhHhhcCC----CCCc-hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH------HHHHHHHHHH
Q 036290          662 SHKGLVDKGCLLFKSMDSQYGM----QPSP-DCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP------TVYRSLLSGC  729 (796)
Q Consensus       662 ~~~g~~~~A~~~~~~~~~~~~~----~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~------~~~~~l~~~~  729 (796)
                      .+.|++++|.++|+++....--    +.+. ..+...+-++...|+...|.+.+++. ...|..      .....|+.++
T Consensus       166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~  245 (282)
T PF14938_consen  166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY  245 (282)
T ss_dssp             HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence            7778888888888777643111    1111 12333444566677887887777776 233321      2334444444


Q ss_pred             HhcCChHHHHHHHHH
Q 036290          730 RIHGNKELGEWASEK  744 (796)
Q Consensus       730 ~~~g~~~~A~~~~~~  744 (796)
                       ..||.+.-......
T Consensus       246 -~~~D~e~f~~av~~  259 (282)
T PF14938_consen  246 -EEGDVEAFTEAVAE  259 (282)
T ss_dssp             -HTT-CCCHHHHCHH
T ss_pred             -HhCCHHHHHHHHHH
Confidence             44565554444443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.37  E-value=0.041  Score=57.60  Aligned_cols=78  Identities=12%  Similarity=0.123  Sum_probs=45.6

Q ss_pred             HHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCC
Q 036290          450 TFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGH  529 (796)
Q Consensus       450 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~  529 (796)
                      +...+-.-+-+...+..|.++|..|-..         .++++.....++|++|..+-++.++--...|-....-++...+
T Consensus       749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~Dr  819 (1081)
T KOG1538|consen  749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDR  819 (1081)
T ss_pred             HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhh
Confidence            3333334444555666677777665433         3677778888888888888888776333333334444444455


Q ss_pred             hhHHHHH
Q 036290          530 NHEAVTI  536 (796)
Q Consensus       530 ~~~A~~~  536 (796)
                      +++|.+.
T Consensus       820 FeEAqkA  826 (1081)
T KOG1538|consen  820 FEEAQKA  826 (1081)
T ss_pred             HHHHHHH
Confidence            5544443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.37  E-value=0.016  Score=57.79  Aligned_cols=145  Identities=14%  Similarity=0.154  Sum_probs=86.5

Q ss_pred             HHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-CCHHHHHHHHhccCCC----C----ChhHHHHHHHHH
Q 036290          556 LNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKC-GDIKGARMAFDQSFNS----N----DVIVYNTLIMAY  626 (796)
Q Consensus       556 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~----~----~~~~~~~li~~~  626 (796)
                      +..|...|++..+-+.+               ..+...|... |++++|.+.|++...-    .    -...+..+...+
T Consensus       101 ~~~y~~~G~~~~aA~~~---------------~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~  165 (282)
T PF14938_consen  101 IEIYREAGRFSQAAKCL---------------KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY  165 (282)
T ss_dssp             HHHHHHCT-HHHHHHHH---------------HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence            34455666666554444               3456677777 8888888888655432    1    234566777889


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC------chHHHHHH
Q 036290          627 AHHGLVSEAMEIFDKMKLANLQP-----SQA-TFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS------PDCYGCLV  694 (796)
Q Consensus       627 ~~~g~~~~A~~~~~~m~~~g~~p-----~~~-t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~------~~~~~~l~  694 (796)
                      .+.|++++|.++|++....-...     +.. .|...+-++...||+..|.+.+++..   ...|.      ......|+
T Consensus       166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~---~~~~~F~~s~E~~~~~~l~  242 (282)
T PF14938_consen  166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYC---SQDPSFASSREYKFLEDLL  242 (282)
T ss_dssp             HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHG---TTSTTSTTSHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCCCcHHHHHHHHHH
Confidence            99999999999999988754331     111 22333446667899999999999987   33443      34455566


Q ss_pred             HHHHh--cCChHHHHHHHHhCCCCCCH
Q 036290          695 DMLSR--NGYLEDAKHVIEIMPFQPSP  719 (796)
Q Consensus       695 ~~~~~--~g~~~~A~~~~~~~~~~p~~  719 (796)
                      .++-.  ...+++|+.-|+.+. +.|.
T Consensus       243 ~A~~~~D~e~f~~av~~~d~~~-~ld~  268 (282)
T PF14938_consen  243 EAYEEGDVEAFTEAVAEYDSIS-RLDN  268 (282)
T ss_dssp             HHHHTT-CCCHHHHCHHHTTSS----H
T ss_pred             HHHHhCCHHHHHHHHHHHcccC-ccHH
Confidence            66653  235666666666663 3444

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.34  E-value=0.0021  Score=55.59  Aligned_cols=95  Identities=9%  Similarity=-0.078  Sum_probs=80.3

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 036290          653 TFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGC  729 (796)
Q Consensus       653 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~  729 (796)
                      ..-.+..-+...|++++|..+|+-+.   -+.|. ..-|..|.-++-..|++++|++.+... .+.| |+..+-.+..++
T Consensus        37 ~lY~~A~~ly~~G~l~~A~~~f~~L~---~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~  113 (157)
T PRK15363         37 TLYRYAMQLMEVKEFAGAARLFQLLT---IYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY  113 (157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHH---HhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence            34445556678999999999999988   56777 677778999999999999999999998 4455 667888999999


Q ss_pred             HhcCChHHHHHHHHHHHccCC
Q 036290          730 RIHGNKELGEWASEKLLLLLP  750 (796)
Q Consensus       730 ~~~g~~~~A~~~~~~~~~~~p  750 (796)
                      .+.|+.+.|++.|+.++..--
T Consensus       114 L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        114 LACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             HHcCCHHHHHHHHHHHHHHhc
Confidence            999999999999999998763

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.31  E-value=0.00051  Score=53.89  Aligned_cols=82  Identities=17%  Similarity=0.148  Sum_probs=60.4

Q ss_pred             cCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHH
Q 036290          664 KGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSP-TVYRSLLSGCRIHGNKELGEWAS  742 (796)
Q Consensus       664 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~  742 (796)
                      .|+++.|+.+++++.+.....|+...+..+..+|.+.|++++|.+++++.+..|+. .....+..++.+.|++++|+.++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l   81 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL   81 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            57899999999999855222224455666899999999999999999885444544 44556677789999999999998


Q ss_pred             HHH
Q 036290          743 EKL  745 (796)
Q Consensus       743 ~~~  745 (796)
                      +++
T Consensus        82 ~~~   84 (84)
T PF12895_consen   82 EKA   84 (84)
T ss_dssp             HHH
T ss_pred             hcC
Confidence            874

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.31  E-value=0.0021  Score=51.22  Aligned_cols=79  Identities=13%  Similarity=0.092  Sum_probs=66.3

Q ss_pred             HHHHHHHHhCCCccHHHHHHHHHHHcCC-CCCcchHHHHHHHhcccC--------ChHHHHHHHHHHHHhCCCCchhHHH
Q 036290          316 NTLFGGFSENKNPGQTASLFHKFILSGS-RPNHVTFSILLRQCGKLL--------DLDLGLQLQCLALHCGFLDEENVTS  386 (796)
Q Consensus       316 ~~li~~~~~~~~~~~a~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~  386 (796)
                      ...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+.++..        .+-..+.+++.|...++.|+..+|+
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn  108 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN  108 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence            4456677778999999999999999999 999999999999887654        2446677889999999999999999


Q ss_pred             HHHHHHHh
Q 036290          387 SLIYMFCR  394 (796)
Q Consensus       387 ~ll~~~~~  394 (796)
                      .++..+.+
T Consensus       109 ivl~~Llk  116 (120)
T PF08579_consen  109 IVLGSLLK  116 (120)
T ss_pred             HHHHHHHH
Confidence            99887764

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.30  E-value=0.006  Score=51.71  Aligned_cols=100  Identities=19%  Similarity=0.196  Sum_probs=69.0

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHH
Q 036290          617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPS----QATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYG  691 (796)
Q Consensus       617 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~  691 (796)
                      .++..++..+...|++++|.+.|+++...  .|+    ...+..+..++.+.|+++.|...++.+.....-.|. ...+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~   80 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL   80 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence            34556667777888888888888888763  333    234556777788888888888888888744222121 45677


Q ss_pred             HHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 036290          692 CLVDMLSRNGYLEDAKHVIEIM-PFQPS  718 (796)
Q Consensus       692 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~  718 (796)
                      .+..++.+.|++++|.+.++++ ...|+
T Consensus        81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~  108 (119)
T TIGR02795        81 KLGMSLQELGDKEKAKATLQQVIKRYPG  108 (119)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence            7778888888888888888877 33443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.28  E-value=0.004  Score=56.89  Aligned_cols=117  Identities=15%  Similarity=0.166  Sum_probs=77.4

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHH
Q 036290          615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPS--QATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYG  691 (796)
Q Consensus       615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~  691 (796)
                      ....+..+...+...|++++|...|++..+.+..+.  ...+..+...+.+.|++++|...+++..   ...|+ ...+.
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~  110 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQAL---ELNPKQPSALN  110 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcccHHHHH
Confidence            445666777777778888888888887776432222  2456666677777788888888877777   33454 55555


Q ss_pred             HHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 036290          692 CLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKN  752 (796)
Q Consensus       692 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  752 (796)
                      .+..++...|+...+..-++..                  ...+++|.+.++++++.+|++
T Consensus       111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh
Confidence            6666676666655544333221                  112677899999999999986

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.28  E-value=0.0031  Score=65.02  Aligned_cols=94  Identities=16%  Similarity=0.129  Sum_probs=72.7

Q ss_pred             HHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCH
Q 036290          591 IDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLV  667 (796)
Q Consensus       591 i~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~  667 (796)
                      ...+...|++++|++.|++.+..  .+...|..+..+|...|++++|+..+++..+  +.| +...|..+..+|...|++
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg~~   86 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLEEY   86 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCCH
Confidence            45566778888888888777664  3667788888888888888888888888888  566 556677777888888888


Q ss_pred             HHHHHHHHHhHhhcCCCCCchH
Q 036290          668 DKGCLLFKSMDSQYGMQPSPDC  689 (796)
Q Consensus       668 ~~A~~~~~~~~~~~~~~p~~~~  689 (796)
                      ++|+..|++..   .+.|+-..
T Consensus        87 ~eA~~~~~~al---~l~P~~~~  105 (356)
T PLN03088         87 QTAKAALEKGA---SLAPGDSR  105 (356)
T ss_pred             HHHHHHHHHHH---HhCCCCHH
Confidence            88888888887   45666333

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.24  E-value=0.067  Score=56.10  Aligned_cols=40  Identities=5%  Similarity=0.037  Sum_probs=21.5

Q ss_pred             chHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHH
Q 036290          429 DADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIH  471 (796)
Q Consensus       429 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~  471 (796)
                      +-+...-+++|+++|-.|+.....   ..|+-.|.+.+|.++|
T Consensus       616 ~L~li~EL~~~k~rge~P~~iLlA---~~~Ay~gKF~EAAklF  655 (1081)
T KOG1538|consen  616 YLELISELEERKKRGETPNDLLLA---DVFAYQGKFHEAAKLF  655 (1081)
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHH---HHHHhhhhHHHHHHHH
Confidence            344555567777777777765432   2233344444444443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.23  E-value=0.35  Score=51.54  Aligned_cols=125  Identities=7%  Similarity=0.025  Sum_probs=64.5

Q ss_pred             CCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCC----cchHHHHHHHhcccCChHHHHHH
Q 036290          294 SSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPN----HVTFSILLRQCGKLLDLDLGLQL  369 (796)
Q Consensus       294 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~  369 (796)
                      -|++++|.+++-++.++|.     .|..+.+.|++-...++++.   .|-..|    ...++.+-..++....+++|.+.
T Consensus       747 ~g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y  818 (1189)
T KOG2041|consen  747 YGEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY  818 (1189)
T ss_pred             hcchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3788888888888777664     24445555666555555432   111111    11344444444444455555555


Q ss_pred             HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHH
Q 036290          370 QCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTF  436 (796)
Q Consensus       370 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  436 (796)
                      +..-...         ...+.++.+...+++.+.+-..+++ +....-.+...+.+.|.-++|.+.|
T Consensus       819 Y~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~  875 (1189)
T KOG2041|consen  819 YSYCGDT---------ENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAY  875 (1189)
T ss_pred             HHhccch---------HhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHH
Confidence            4432111         1345555555556655555555543 2333445555666666666665554

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.19  E-value=0.33  Score=49.23  Aligned_cols=203  Identities=16%  Similarity=0.159  Sum_probs=117.7

Q ss_pred             HhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHh-cc---CchHHHHHHHHHHHHhCCCC
Q 036290          514 MASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILG-------TILNSCA-AI---GAYQRTKSIHPFVIKLGFNT  582 (796)
Q Consensus       514 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~-------~ll~~~~-~~---~~~~~a~~~~~~~~~~~~~~  582 (796)
                      ..++..++....+.++...|.+.+.-+.-.  .|+...-.       .+-+..+ .-   .+...-..+|+.....++..
T Consensus       298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr  375 (549)
T PF07079_consen  298 IDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR  375 (549)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH
Confidence            445666777777777777777777666433  33332111       1111112 11   12223344455554444431


Q ss_pred             chhHHHHHHH---HHHhcCC-HHHHHHHHhccCCC--CChhHHHHHH----HHHHh---cCChHHHHHHHHHHHHCCCCC
Q 036290          583 EVYVASAVID---AYAKCGD-IKGARMAFDQSFNS--NDVIVYNTLI----MAYAH---HGLVSEAMEIFDKMKLANLQP  649 (796)
Q Consensus       583 ~~~~~~~li~---~~~~~g~-~~~A~~~~~~~~~~--~~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~g~~p  649 (796)
                      . .....|+.   -+=+.|. -+.|+++++..+.-  -|...-|.+.    .+|.+   ...+.+-..+-+-+.+.|+.|
T Consensus       376 q-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~  454 (549)
T PF07079_consen  376 Q-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP  454 (549)
T ss_pred             H-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence            1 11122222   2233444 67778887433332  3554444332    22332   234555666666677888887


Q ss_pred             CH----HHHHHHHHH--HhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHH
Q 036290          650 SQ----ATFVSVMSA--CSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYR  723 (796)
Q Consensus       650 ~~----~t~~~ll~~--~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~  723 (796)
                      -.    ..-|.|.+|  +...|++.++.-+-.-+.   .+.|++.+|..++-++....++++|..++.+++  |+..+++
T Consensus       455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~d  529 (549)
T PF07079_consen  455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRD  529 (549)
T ss_pred             ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHH
Confidence            32    334445443  457899999988776666   689999999999999999999999999999974  5666665


Q ss_pred             H
Q 036290          724 S  724 (796)
Q Consensus       724 ~  724 (796)
                      +
T Consensus       530 s  530 (549)
T PF07079_consen  530 S  530 (549)
T ss_pred             H
Confidence            4

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.19  E-value=0.0007  Score=50.74  Aligned_cols=64  Identities=23%  Similarity=0.209  Sum_probs=53.4

Q ss_pred             chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChHHHHHHHHHHHccCC
Q 036290          687 PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHG-NKELGEWASEKLLLLLP  750 (796)
Q Consensus       687 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p  750 (796)
                      +..|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            567788888889999999999998887 4555 4467888888888888 79999999999999888

...

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.17  E-value=0.0041  Score=49.95  Aligned_cols=90  Identities=20%  Similarity=0.217  Sum_probs=59.5

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHH
Q 036290          619 YNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDM  696 (796)
Q Consensus       619 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~  696 (796)
                      +..+...+...|++++|...+++..+  ..| +...+..+...+...|++++|.+.++....   ..|. ...+..++..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~   77 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE---LDPDNAKAYYNLGLA   77 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCcchhHHHHHHHH
Confidence            44555666667777777777777766  334 334555666667777777777777777662   2333 4566677777


Q ss_pred             HHhcCChHHHHHHHHhC
Q 036290          697 LSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       697 ~~~~g~~~~A~~~~~~~  713 (796)
                      +...|++++|...+++.
T Consensus        78 ~~~~~~~~~a~~~~~~~   94 (100)
T cd00189          78 YYKLGKYEEALEAYEKA   94 (100)
T ss_pred             HHHHHhHHHHHHHHHHH
Confidence            77777777777777654

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.15  E-value=0.023  Score=49.76  Aligned_cols=130  Identities=17%  Similarity=0.182  Sum_probs=103.3

Q ss_pred             CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHH
Q 036290          579 GFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS---NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP---SQA  652 (796)
Q Consensus       579 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~  652 (796)
                      ...|++..-..|..++...|+..+|...|++.+..   .|....-.+.++....+++..|...++++.+..  |   +..
T Consensus        84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd  161 (251)
T COG4700          84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPD  161 (251)
T ss_pred             hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCC
Confidence            44567777778888999999999999999877776   488888888888899999999999999998843  4   233


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          653 TFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       653 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      +...+.+.+...|++.+|...|+...   ...|++..-......+.++|+..+|..-+...
T Consensus       162 ~~Ll~aR~laa~g~~a~Aesafe~a~---~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v  219 (251)
T COG4700         162 GHLLFARTLAAQGKYADAESAFEVAI---SYYPGPQARIYYAEMLAKQGRLREANAQYVAV  219 (251)
T ss_pred             chHHHHHHHHhcCCchhHHHHHHHHH---HhCCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            45566788899999999999999988   56778766666778888999888776555443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.13  E-value=0.00013  Score=54.52  Aligned_cols=58  Identities=19%  Similarity=0.363  Sum_probs=31.8

Q ss_pred             ccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHH
Q 036290          663 HKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVYR  723 (796)
Q Consensus       663 ~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~  723 (796)
                      ..|++++|+++|+++...   .|+ ...+..++.+|.+.|++++|.++++++ ...|+...|.
T Consensus         3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~   62 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ   62 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred             hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            456666666666666522   343 455555666666666666666666666 3445543333

...

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.12  E-value=0.011  Score=53.92  Aligned_cols=88  Identities=15%  Similarity=0.211  Sum_probs=67.2

Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHhccCCC-CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHH
Q 036290          583 EVYVASAVIDAYAKCGDIKGARMAFDQSFNS-ND----VIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVS  656 (796)
Q Consensus       583 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~  656 (796)
                      ....+..+...+...|++++|...|++.+.. ++    ...+..+...+.+.|++++|...+++..+  ..| +...+..
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~  111 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNN  111 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHH
Confidence            3445677788889999999999999777643 22    45788888999999999999999999998  566 4555666


Q ss_pred             HHHHHhccCCHHHHHH
Q 036290          657 VMSACSHKGLVDKGCL  672 (796)
Q Consensus       657 ll~~~~~~g~~~~A~~  672 (796)
                      +...+...|+...+..
T Consensus       112 lg~~~~~~g~~~~a~~  127 (172)
T PRK02603        112 IAVIYHKRGEKAEEAG  127 (172)
T ss_pred             HHHHHHHcCChHhHhh
Confidence            6777777777544443

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.11  E-value=0.0045  Score=49.47  Aligned_cols=79  Identities=10%  Similarity=-0.036  Sum_probs=65.8

Q ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHCCC-CCCHhhHHHHHHhhccCC--------CchHHHHHHHHHHHhcCCCChHHHH
Q 036290          215 NAMIGGYAHCGYGFEALNVVSSMLFEGI-TMDKYTFINALQGCSLVA--------DFDIGRQIHGLIIRSEVECSISIVN  285 (796)
Q Consensus       215 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~  285 (796)
                      ...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+.++..        +....+.+++.|+..++.|+..+|+
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn  108 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN  108 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence            3456666777999999999999999999 899999999999987643        2345677888999999999999999


Q ss_pred             HHHHhhhc
Q 036290          286 ALIDMYIK  293 (796)
Q Consensus       286 ~li~~~~~  293 (796)
                      .++..+.+
T Consensus       109 ivl~~Llk  116 (120)
T PF08579_consen  109 IVLGSLLK  116 (120)
T ss_pred             HHHHHHHH
Confidence            99887654

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.11  E-value=0.0054  Score=63.19  Aligned_cols=116  Identities=11%  Similarity=0.106  Sum_probs=86.8

Q ss_pred             ChHHHHHHHHhhhcCCCHHHHHHHHhhcCC-C-----CcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHH
Q 036290          280 SISIVNALIDMYIKSSGMDYAFKVFERMAD-K-----DVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSIL  353 (796)
Q Consensus       280 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~l  353 (796)
                      +......+++.+....+++.+..++.+... |     -..+..++|+.|.+.|..+.++++++.=...|+-||..||+.+
T Consensus        65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L  144 (429)
T PF10037_consen   65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL  144 (429)
T ss_pred             cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence            444455556666666666666666665543 1     1235568899999999999999999988889999999999999


Q ss_pred             HHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 036290          354 LRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRC  395 (796)
Q Consensus       354 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~  395 (796)
                      |..+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus       145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            999999999999999998888777666666665555555554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.08  E-value=0.0093  Score=61.53  Aligned_cols=120  Identities=13%  Similarity=0.136  Sum_probs=86.1

Q ss_pred             CCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHh--CCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCC----CCHhh
Q 036290          443 GVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKT--GFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAER----LDMAS  516 (796)
Q Consensus       443 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~  516 (796)
                      +.+.+......+++.+....+++.+..++-.....  ....-+.+..++++.|.+.|..+.+..+++.-..    ||..+
T Consensus        61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s  140 (429)
T PF10037_consen   61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS  140 (429)
T ss_pred             CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence            45566777778888888888888888888777664  3333344556777777777777777777766554    77777


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 036290          517 WGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAI  562 (796)
Q Consensus       517 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~  562 (796)
                      +|.+|..+.+.|++..|.++...|..++...++.|+...+.+|.+-
T Consensus       141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            7888888888888888888877777666666667776666666554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.08  E-value=0.42  Score=48.48  Aligned_cols=448  Identities=13%  Similarity=0.066  Sum_probs=223.7

Q ss_pred             ccCChhhHHHHHHHHHHhCC-CCC----chhhHHHHHHHHccCChhHHHHHhcccCC-CCcchHHHHHHHH--HhcCCch
Q 036290           56 NLKSRVLGTQVHGHIVKLGF-TND----IFLQNNLIAMYSKCGYFGWGLRVFDEMAE-RNLVSWTLIVSAA--IQNGEFD  127 (796)
Q Consensus        56 ~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~ll~~~--~~~~~~~  127 (796)
                      ..+++..+..+|.++.+.-- .|.    ....+.++++|....- +.-...+.+..+ -....|-.+..++  -+.+.+.
T Consensus        18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nl-d~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~   96 (549)
T PF07079_consen   18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNL-DLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYR   96 (549)
T ss_pred             HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhH-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHH
Confidence            56788899999988876521 111    2456788888875542 222222222222 1234566666553  3678888


Q ss_pred             HHHHHHHHHHHC--CCCC------------CcccHHHHHHHHhccCChhHHHHHHHHHHHhc----CCCChhHhhHHHHH
Q 036290          128 MGLKMYVDMKTN--GFMP------------NEFAVGSVMKVCVSMGASEFGYSIHCFALKIR----IEKNPFVGCSVLNF  189 (796)
Q Consensus       128 ~a~~~~~~m~~~--~~~p------------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~~~li~~  189 (796)
                      .|++.|....++  +.+|            |-.-=+....++...|++.+++.+++.++..=    ..-+..+|+.++-+
T Consensus        97 kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlm  176 (549)
T PF07079_consen   97 KALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLM  176 (549)
T ss_pred             HHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Confidence            998888887665  3222            12222344556678888888888888877654    34788888888777


Q ss_pred             HHccCChhHHHHHhhccCCCCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccC--CCchHHHH
Q 036290          190 YAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLV--ADFDIGRQ  267 (796)
Q Consensus       190 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--~~~~~a~~  267 (796)
                      ++++=-++    +-+.+...=..-|-.+|..|.+.=+      .++.-.-..+.|....+..++....-.  .....-.+
T Consensus       177 lsrSYfLE----l~e~~s~dl~pdyYemilfY~kki~------~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq  246 (549)
T PF07079_consen  177 LSRSYFLE----LKESMSSDLYPDYYEMILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQ  246 (549)
T ss_pred             HhHHHHHH----HHHhcccccChHHHHHHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHH
Confidence            77642111    1111111111224444544443211      111111112345555555555554432  23344556


Q ss_pred             HHHHHHHhcCCCChH-HHHHHHHhhhcCCCHHHHHHHHhhcCC--------CCcchHHHHHHHHHhCCCccHHHHHHHHH
Q 036290          268 IHGLIIRSEVECSIS-IVNALIDMYIKSSGMDYAFKVFERMAD--------KDVISWNTLFGGFSENKNPGQTASLFHKF  338 (796)
Q Consensus       268 ~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~l~~~m  338 (796)
                      +++...+..+.|+-. +...|+.-+.+  +.+++..+.+.+..        .=+.++..++....+.++...|-+.+.-+
T Consensus       247 ~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL  324 (549)
T PF07079_consen  247 ILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALL  324 (549)
T ss_pred             HHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            666666666777543 33444444444  44555444443321        12334445555555555555555444443


Q ss_pred             HHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCChHHHHHHHHhCCCCChh
Q 036290          339 ILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCR----CGAVEMAHSVFDNVSYKNIT  414 (796)
Q Consensus       339 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~  414 (796)
                      ..-  .|+...-.-++                         .+.   ..+.+..+.    .-+..+-..+++.....|+.
T Consensus       325 ~~l--dp~~svs~Kll-------------------------ls~---~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD  374 (549)
T PF07079_consen  325 KIL--DPRISVSEKLL-------------------------LSP---KVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID  374 (549)
T ss_pred             Hhc--CCcchhhhhhh-------------------------cCH---HHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc
Confidence            321  22221100000                         000   111222221    11222333444444433322


Q ss_pred             ---hHHHHH---HHHHhcCC-chHHHHHHHHHHhcCCcccH-----HHHHHHHHHhcc---cCcHHHHHHHHHHHHHhCC
Q 036290          415 ---TWNELL---SGYCFNCC-DADVLKTFCNIWESGVEVNG-----CTFFYVVETCCR---SENQQMVGQIHGAIIKTGF  479 (796)
Q Consensus       415 ---~~~~li---~~~~~~g~-~~~a~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~  479 (796)
                         .-..|+   .-+.+.|. -++|+++++...+  +.|..     .++..+=.+|.+   ...+..-..+-+.+.+.|+
T Consensus       375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl  452 (549)
T PF07079_consen  375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGL  452 (549)
T ss_pred             HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence               111222   23445555 7788888888776  23322     222222233322   2445556666666777887


Q ss_pred             CCCch----hHhHHHH--HHHhcCCcchHHHH--HhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH
Q 036290          480 SSCGY----ICSSLIK--SYVNFGQLDNSFEF--SNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYI  551 (796)
Q Consensus       480 ~~~~~----~~~~l~~--~~~~~g~~~~A~~~--~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t  551 (796)
                      +|-..    .-|.|.+  .+...|++.++.-.  +-.-..|.+.+|..+.-++....++++|...+.++     +|+..+
T Consensus       453 ~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~  527 (549)
T PF07079_consen  453 TPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERM  527 (549)
T ss_pred             CcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhh
Confidence            77443    3333332  23456777766533  22233467777777777777777777777777764     555555


Q ss_pred             HH
Q 036290          552 LG  553 (796)
Q Consensus       552 ~~  553 (796)
                      +.
T Consensus       528 ~d  529 (549)
T PF07079_consen  528 RD  529 (549)
T ss_pred             HH
Confidence            44

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.05  E-value=0.0068  Score=55.17  Aligned_cols=95  Identities=13%  Similarity=0.035  Sum_probs=44.4

Q ss_pred             HHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHH
Q 036290          656 SVMSACSHKGLVDKGCLLFKSMDSQYGMQPS----PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS-PTVYRSLLSGC  729 (796)
Q Consensus       656 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~  729 (796)
                      .+...+...|++++|...|++....   .|+    ..++..+..++...|++++|.+.+++. ...|+ ..++..+...+
T Consensus        40 ~~g~~~~~~g~~~~A~~~~~~al~l---~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~  116 (168)
T CHL00033         40 RDGMSAQSEGEYAEALQNYYEAMRL---EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC  116 (168)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhc---cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence            3333344444455555544444411   111    123444444555555555555554444 22221 22333333333


Q ss_pred             H-------hcCChH-------HHHHHHHHHHccCCCCC
Q 036290          730 R-------IHGNKE-------LGEWASEKLLLLLPKND  753 (796)
Q Consensus       730 ~-------~~g~~~-------~A~~~~~~~~~~~p~~~  753 (796)
                      .       ..|+++       +|..++++++..+|++.
T Consensus       117 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        117 HYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            3       445544       66777778888888643

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.99  E-value=0.008  Score=58.44  Aligned_cols=98  Identities=13%  Similarity=0.171  Sum_probs=66.2

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHH
Q 036290          654 FVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS----PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS----PTVYRS  724 (796)
Q Consensus       654 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~  724 (796)
                      |...+....+.|++++|...|+.+.+.   .|+    +..+..++.+|...|++++|...|+++ ...|+    ...+..
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            444444445567777777777777744   344    245666777888888888888887777 22232    345555


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHccCCCCCc
Q 036290          725 LLSGCRIHGNKELGEWASEKLLLLLPKNDA  754 (796)
Q Consensus       725 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  754 (796)
                      ++.++...|+.+.|...++++++..|++..
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~  252 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDG  252 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence            666677788888888888888888887654

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.90  E-value=0.13  Score=45.32  Aligned_cols=129  Identities=16%  Similarity=0.116  Sum_probs=97.8

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC---chHH
Q 036290          614 NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS---PDCY  690 (796)
Q Consensus       614 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~  690 (796)
                      |++..--.|..+....|+..+|...|++...--+.-|......+.++....++...|...++.+.+-   .|+   +.+.
T Consensus        87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~---~pa~r~pd~~  163 (251)
T COG4700          87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY---NPAFRSPDGH  163 (251)
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc---CCccCCCCch
Confidence            5666666788999999999999999999876434458888888999999999999999999998733   344   5666


Q ss_pred             HHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 036290          691 GCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVYRSLLSGCRIHGNKELGEWASEKL  745 (796)
Q Consensus       691 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  745 (796)
                      -.+.+.|...|++++|..-|+.. ...|++..--....-+.++|+..+|..-+..+
T Consensus       164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v  219 (251)
T COG4700         164 LLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAV  219 (251)
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            77889999999999999999887 56677644333334456677665555444433

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.90  E-value=0.022  Score=54.61  Aligned_cols=105  Identities=17%  Similarity=0.188  Sum_probs=73.1

Q ss_pred             CC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcC---ChHHHHHHHHhC-CCCC-CHH
Q 036290          648 QP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNG---YLEDAKHVIEIM-PFQP-SPT  720 (796)
Q Consensus       648 ~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~~  720 (796)
                      .| |...|..|...|...|+++.|...|....   .+.|+ +..+..+..++....   ...++.++++++ ...| |..
T Consensus       152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~---rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ir  228 (287)
T COG4235         152 NPGDAEGWDLLGRAYMALGRASDALLAYRNAL---RLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIR  228 (287)
T ss_pred             CCCCchhHHHHHHHHHHhcchhHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHH
Confidence            45 77778888888888888888888888777   34444 556666666655432   456777788777 4555 345


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcc
Q 036290          721 VYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAA  755 (796)
Q Consensus       721 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  755 (796)
                      ....|...+...|++++|...++.+++..|.+..-
T Consensus       229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r  263 (287)
T COG4235         229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR  263 (287)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence            55566666788888888888888888877766554

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.88  E-value=0.0071  Score=54.91  Aligned_cols=96  Identities=17%  Similarity=0.182  Sum_probs=71.9

Q ss_pred             HHHhhc--CCCCcchHHHHHHHHHh-----CCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccC-------------
Q 036290          302 KVFERM--ADKDVISWNTLFGGFSE-----NKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLL-------------  361 (796)
Q Consensus       302 ~~~~~~--~~~~~~~~~~li~~~~~-----~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~-------------  361 (796)
                      ..|+..  ..++-.+|..+|..+.+     .|..+=....++.|.+.|+.-|..+|+.||..+-+..             
T Consensus        35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h  114 (228)
T PF06239_consen   35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH  114 (228)
T ss_pred             HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence            344443  33566666666666654     3666777778888899999999999999998886532             


Q ss_pred             ---ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 036290          362 ---DLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGA  397 (796)
Q Consensus       362 ---~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~  397 (796)
                         +-+-|.+++++|...|+.||..++..|++.+++.+.
T Consensus       115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence               456788899999999999999999999988866554

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=96.87  E-value=0.015  Score=52.91  Aligned_cols=94  Identities=14%  Similarity=0.125  Sum_probs=63.1

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHH
Q 036290          616 VIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP--SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGC  692 (796)
Q Consensus       616 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~  692 (796)
                      ...|..+...+...|++++|+..|++.......|  ...++..+...+...|++++|+..+++..   .+.|+ ...+..
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al---~~~~~~~~~~~~  111 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL---ERNPFLPQALNN  111 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcCcHHHHHH
Confidence            3455666677777888888888888887643222  12467777778888888888888888877   33454 455556


Q ss_pred             HHHHHH-------hcCChHHHHHHHHh
Q 036290          693 LVDMLS-------RNGYLEDAKHVIEI  712 (796)
Q Consensus       693 l~~~~~-------~~g~~~~A~~~~~~  712 (796)
                      +...+.       +.|++++|...+++
T Consensus       112 la~i~~~~~~~~~~~g~~~~A~~~~~~  138 (168)
T CHL00033        112 MAVICHYRGEQAIEQGDSEIAEAWFDQ  138 (168)
T ss_pred             HHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence            666666       77777766555544

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.86  E-value=0.038  Score=54.88  Aligned_cols=141  Identities=14%  Similarity=0.133  Sum_probs=84.4

Q ss_pred             hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 036290          515 ASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNS-CAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDA  593 (796)
Q Consensus       515 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  593 (796)
                      .+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...+...++.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            356666666666666777777777776432 2222233222222 22345666677777776664 33366677777777


Q ss_pred             HHhcCCHHHHHHHHhccCCC-C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036290          594 YAKCGDIKGARMAFDQSFNS-N----DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMS  659 (796)
Q Consensus       594 ~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  659 (796)
                      +.+.|+.+.|..+|+..+.. +    ....|...+..-.+.|+.+.+.++.+++.+  ..|+......+++
T Consensus        80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~  148 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSD  148 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHC
T ss_pred             HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHH
Confidence            77778888888888666665 2    234677777777777888888888777777  4555444444443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.85  E-value=0.0021  Score=48.74  Aligned_cols=63  Identities=21%  Similarity=0.197  Sum_probs=49.6

Q ss_pred             HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcce
Q 036290          694 VDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAH  756 (796)
Q Consensus       694 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  756 (796)
                      -..|.+.+++++|.++++++ ...| +...|.....++.+.|++++|.+.++++++..|+++...
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~   66 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR   66 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence            35677888888888888888 4555 456777788888888999999999999998888776653

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.84  E-value=0.00075  Score=44.92  Aligned_cols=41  Identities=22%  Similarity=0.248  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEec
Q 036290          720 TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLS  760 (796)
Q Consensus       720 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~  760 (796)
                      .+|..+...+...|++++|+++++++++.+|+|+.++..|+
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            46788999999999999999999999999999998887664

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.84  E-value=0.0026  Score=47.44  Aligned_cols=48  Identities=19%  Similarity=0.259  Sum_probs=21.9

Q ss_pred             cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 036290          629 HGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMD  678 (796)
Q Consensus       629 ~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~  678 (796)
                      .|++++|+++|+++.+  ..| +...+..+..+|.+.|++++|..+++++.
T Consensus         4 ~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~   52 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQGQYDEAEELLERLL   52 (68)
T ss_dssp             TTHHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred             ccCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4444555555555444  233 33334444444445555555555554444

...

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.84  E-value=0.1  Score=52.82  Aligned_cols=125  Identities=15%  Similarity=0.064  Sum_probs=68.0

Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh---------ccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHh
Q 036290          629 HGLVSEAMEIFDKMKLANLQPSQATFVSVMSACS---------HKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSR  699 (796)
Q Consensus       629 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~---------~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~  699 (796)
                      .|+.++|+.++..+....-.++..||..+.+.|-         .....++|+..|.+.-   .+.|+.+.--.++.++..
T Consensus       195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~  271 (374)
T PF13281_consen  195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLML  271 (374)
T ss_pred             CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHH
Confidence            4445555555544333333344444444333221         1122666777666554   555664443334444444


Q ss_pred             cCChHH----HHHHH---Hh-C---C---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcce
Q 036290          700 NGYLED----AKHVI---EI-M---P---FQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAH  756 (796)
Q Consensus       700 ~g~~~~----A~~~~---~~-~---~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  756 (796)
                      .|...+    ..++-   .. .   +   -..+-..+.+++.++.-.||.+.|.+.++++++..|+.-...
T Consensus       272 ~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~  342 (374)
T PF13281_consen  272 AGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELE  342 (374)
T ss_pred             cCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHH
Confidence            443222    22222   11 1   1   224556678889999999999999999999999987655443

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.78  E-value=1.1  Score=48.63  Aligned_cols=107  Identities=19%  Similarity=0.194  Sum_probs=55.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 036290          587 ASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGL  666 (796)
Q Consensus       587 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~  666 (796)
                      .+--+.-+...|+..+|.++- ...+-||-..|-.-+.+++..++|++-+++-+.++      ...-|.....+|.+.|+
T Consensus       687 l~dTv~~li~~g~~k~a~ql~-~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n  759 (829)
T KOG2280|consen  687 LHDTVTTLILIGQNKRAEQLK-SDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGN  759 (829)
T ss_pred             HHHHHHHHHHccchHHHHHHH-HhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhccc
Confidence            333444445556666666655 55555566566656666666666655444433332      12334445556666666


Q ss_pred             HHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHH
Q 036290          667 VDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVI  710 (796)
Q Consensus       667 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~  710 (796)
                      .++|.+++-+..   |..       -.+.+|.+.|++.+|.++-
T Consensus       760 ~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A  793 (829)
T KOG2280|consen  760 KDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLA  793 (829)
T ss_pred             HHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHHHH
Confidence            666666554432   111       3455555666655555543

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.78  E-value=0.015  Score=52.94  Aligned_cols=97  Identities=11%  Similarity=0.121  Sum_probs=77.3

Q ss_pred             HHHhcC--CCCCHhhHHHHHHHHHHc-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc--------------
Q 036290          504 EFSNGA--ERLDMASWGAMMSALVHQ-----GHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAI--------------  562 (796)
Q Consensus       504 ~~~~~~--~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--------------  562 (796)
                      ..|+..  ...+-.+|..++..|.+.     |..+=....+..|.+-|+.-|..+|+.||+.+-+.              
T Consensus        35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h  114 (228)
T PF06239_consen   35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH  114 (228)
T ss_pred             HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence            445554  346777788888877654     66777888889999999999999999999988652              


Q ss_pred             --CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 036290          563 --GAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDI  600 (796)
Q Consensus       563 --~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  600 (796)
                        .+.+-|.+++++|...|+-||..++..+++.+++.+..
T Consensus       115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p  154 (228)
T PF06239_consen  115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP  154 (228)
T ss_pred             CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence              34567899999999999999999999999988776653

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.76  E-value=0.5  Score=45.70  Aligned_cols=60  Identities=12%  Similarity=0.051  Sum_probs=37.2

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HH---HHHHHHHhccCchHHHHHHHHHHHHhCCC
Q 036290          520 MMSALVHQGHNHEAVTIFHSLVEAGEKPDEY-IL---GTILNSCAAIGAYQRTKSIHPFVIKLGFN  581 (796)
Q Consensus       520 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-t~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  581 (796)
                      ....+...|++++|.+.|+++...  -|+.. ..   -.+..++.+.++++.|...++...+..+.
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~  101 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT  101 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence            344456677888888888887664  33322 11   23445666777777777777777765444

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.65  E-value=0.075  Score=57.45  Aligned_cols=48  Identities=17%  Similarity=0.018  Sum_probs=22.9

Q ss_pred             ccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          663 HKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       663 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      ..|++++|...++++.   .+.|+...|..+...+...|+.++|.+.+++.
T Consensus       432 ~~g~~~~A~~~l~rAl---~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A  479 (517)
T PRK10153        432 VKGKTDEAYQAINKAI---DLEMSWLNYVLLGKVYELKGDNRLAADAYSTA  479 (517)
T ss_pred             hcCCHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3445555555554444   23344444444455555555555555444443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.64  E-value=0.046  Score=45.66  Aligned_cols=90  Identities=18%  Similarity=0.183  Sum_probs=66.8

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----chHHHHHH
Q 036290          621 TLIMAYAHHGLVSEAMEIFDKMKLANLQPS--QATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS----PDCYGCLV  694 (796)
Q Consensus       621 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~  694 (796)
                      .+..++-..|+.++|+.+|++..+.|+...  ...+..+..++...|++++|..++++....+   |+    ......+.
T Consensus         6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~---p~~~~~~~l~~f~A   82 (120)
T PF12688_consen    6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF---PDDELNAALRVFLA   82 (120)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHH
Confidence            345567778999999999999999887754  3456667788889999999999999888552   43    22223345


Q ss_pred             HHHHhcCChHHHHHHHHhC
Q 036290          695 DMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       695 ~~~~~~g~~~~A~~~~~~~  713 (796)
                      .++...|+.++|++.+-..
T Consensus        83 l~L~~~gr~~eAl~~~l~~  101 (120)
T PF12688_consen   83 LALYNLGRPKEALEWLLEA  101 (120)
T ss_pred             HHHHHCCCHHHHHHHHHHH
Confidence            6777889999999887654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.57  E-value=1.4  Score=47.18  Aligned_cols=153  Identities=11%  Similarity=0.001  Sum_probs=88.8

Q ss_pred             cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCC-----ChhhHHHHHHHHHhcCCchHHHH
Q 036290          360 LLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYK-----NITTWNELLSGYCFNCCDADVLK  434 (796)
Q Consensus       360 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~  434 (796)
                      -|++++|.+++-++-++.         .-|..+.+.|++-...++++.-...     -...|+.+...++....|++|.+
T Consensus       747 ~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~  817 (1189)
T KOG2041|consen  747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK  817 (1189)
T ss_pred             hcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            366677776666555443         2355556666666666666553321     12356666677766666777766


Q ss_pred             HHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCH
Q 036290          435 TFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDM  514 (796)
Q Consensus       435 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  514 (796)
                      .|..-...         ...+.++.+..++++.+.+..     .++.+....-.+.+++.+.|.-++|.+.+-+-..|. 
T Consensus       818 yY~~~~~~---------e~~~ecly~le~f~~LE~la~-----~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-  882 (1189)
T KOG2041|consen  818 YYSYCGDT---------ENQIECLYRLELFGELEVLAR-----TLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-  882 (1189)
T ss_pred             HHHhccch---------HhHHHHHHHHHhhhhHHHHHH-----hcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-
Confidence            66543211         122333444333443333322     346677777788888888888888877765554442 


Q ss_pred             hhHHHHHHHHHHcCChhHHHHHHHHH
Q 036290          515 ASWGAMMSALVHQGHNHEAVTIFHSL  540 (796)
Q Consensus       515 ~~~~~li~~~~~~~~~~~A~~~~~~m  540 (796)
                          +.+..|...++|.+|.++-+..
T Consensus       883 ----aAv~tCv~LnQW~~avelaq~~  904 (1189)
T KOG2041|consen  883 ----AAVHTCVELNQWGEAVELAQRF  904 (1189)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHhc
Confidence                2345566667777777766654

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.55  E-value=0.09  Score=52.39  Aligned_cols=87  Identities=17%  Similarity=0.037  Sum_probs=44.2

Q ss_pred             hccCCHHHHHHHHHHhHhhcCCCCC-----chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCC
Q 036290          662 SHKGLVDKGCLLFKSMDSQYGMQPS-----PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP-TVYRSLLSGCRIHGN  734 (796)
Q Consensus       662 ~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~  734 (796)
                      .+.|++..|.+.+.+..   ++.|+     ...|........+.|+..+|+.--++. .+.|.. ..|..-..++.-.++
T Consensus       260 fk~G~y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~  336 (486)
T KOG0550|consen  260 FKNGNYRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK  336 (486)
T ss_pred             hhccchhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence            34566666666666655   44444     333444445555666666666655554 222211 122222333444566


Q ss_pred             hHHHHHHHHHHHccCCC
Q 036290          735 KELGEWASEKLLLLLPK  751 (796)
Q Consensus       735 ~~~A~~~~~~~~~~~p~  751 (796)
                      +++|.+-++++.+..-+
T Consensus       337 ~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  337 WEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHHHHHHHhhccc
Confidence            66666666666665544

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.48  E-value=0.007  Score=45.22  Aligned_cols=62  Identities=21%  Similarity=0.240  Sum_probs=43.8

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC-CHHHHHHHHHHhH
Q 036290          615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKG-LVDKGCLLFKSMD  678 (796)
Q Consensus       615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g-~~~~A~~~~~~~~  678 (796)
                      +...|..+...+...|++++|+..|++..+  +.| +...|..+..++...| ++++|++.+++..
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al   65 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL   65 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            345666777777777777777777777777  456 4455666667777777 6777777777766

...

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.47  E-value=0.028  Score=54.75  Aligned_cols=100  Identities=19%  Similarity=0.192  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHH
Q 036290          618 VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQ----ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGC  692 (796)
Q Consensus       618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~  692 (796)
                      .|...+..+.+.|++++|...|+.+.+  ..|+.    ..+..+..+|...|++++|...|+.+.+.+.-.|. +..+..
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            455555555667889999999999888  45644    45667778888899999999999998865433333 556666


Q ss_pred             HHHHHHhcCChHHHHHHHHhC-CCCCCH
Q 036290          693 LVDMLSRNGYLEDAKHVIEIM-PFQPSP  719 (796)
Q Consensus       693 l~~~~~~~g~~~~A~~~~~~~-~~~p~~  719 (796)
                      ++.++...|+.++|.+++++. ...|+.
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s  250 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKKYPGT  250 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            777888889999999998887 344543

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.44  E-value=1.3  Score=45.11  Aligned_cols=143  Identities=14%  Similarity=0.152  Sum_probs=113.6

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHH-HH
Q 036290          615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLAN-LQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCY-GC  692 (796)
Q Consensus       615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~-~~  692 (796)
                      -...|...+.+-.+..-.+.|.++|-+..+.| +.++...+++++.-++ .|+...|..+|+.-..   ..||...| .-
T Consensus       396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~---~f~d~~~y~~k  471 (660)
T COG5107         396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL---KFPDSTLYKEK  471 (660)
T ss_pred             hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH---hCCCchHHHHH
Confidence            44578888888888888999999999999998 4578888999887655 6788999999987663   34564333 35


Q ss_pred             HHHHHHhcCChHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290          693 LVDMLSRNGYLEDAKHVIEIM--PFQPS--PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK  761 (796)
Q Consensus       693 l~~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  761 (796)
                      .+.-+.+-++-+.|..+|++.  .+..+  ..+|..++.--..-|+...+..+-+++.+.-|+....-+.++.
T Consensus       472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sr  544 (660)
T COG5107         472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSR  544 (660)
T ss_pred             HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHH
Confidence            566778899999999999966  23333  4789999999999999999999999999999988666555544

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.42  E-value=0.23  Score=47.98  Aligned_cols=68  Identities=10%  Similarity=-0.029  Sum_probs=39.0

Q ss_pred             HHHHccCChhHHHHHhhccCC--CCce-eH---HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHh
Q 036290          188 NFYAKLGDVAAAERVFYSISS--DDVG-CW---NAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQG  255 (796)
Q Consensus       188 ~~~~~~g~~~~A~~~~~~~~~--~~~~-~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  255 (796)
                      ..+.+.|++++|.+.|+.+..  |+.. ..   -.+..++-+.+++++|...+++..+....-....+...+.+
T Consensus        40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g  113 (243)
T PRK10866         40 QQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG  113 (243)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence            334556777777777777654  2221 11   23445667778888888888887765433333334333433

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.41  E-value=0.0079  Score=44.28  Aligned_cols=53  Identities=15%  Similarity=0.202  Sum_probs=26.8

Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 036290          624 MAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMD  678 (796)
Q Consensus       624 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~  678 (796)
                      ..+...|++++|.+.|++..+.  .| +...+..+..++...|++++|..+|+++.
T Consensus         5 ~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~   58 (65)
T PF13432_consen    5 RALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERAL   58 (65)
T ss_dssp             HHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3445555555555555555552  24 33344444455555555555555555554

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.41  E-value=1.9  Score=46.87  Aligned_cols=337  Identities=15%  Similarity=0.088  Sum_probs=151.1

Q ss_pred             HCCCCCCHhhHHH-----HHHhhccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCC---CHHHHHHHHhhcCC-
Q 036290          239 FEGITMDKYTFIN-----ALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSS---GMDYAFKVFERMAD-  309 (796)
Q Consensus       239 ~~g~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~-  309 (796)
                      .-|++.+..-|..     +|.-+...+.+..|.++-..+-..-..- ..++......+.+..   +.+.+..+-+++.. 
T Consensus       425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~  503 (829)
T KOG2280|consen  425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK  503 (829)
T ss_pred             ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence            3466666665544     3444555666666666665553222222 455555555555542   23334445555554 


Q ss_pred             -CCcchHHHHHHHHHhCCCccHHHHHHHHHHHcC----CCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhH
Q 036290          310 -KDVISWNTLFGGFSENKNPGQTASLFHKFILSG----SRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENV  384 (796)
Q Consensus       310 -~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g----~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~  384 (796)
                       ....+|..+.+.....|+.+-|..+++.=...+    +-.+-.-+...+.-+...|+.+....++-.+...-   +...
T Consensus       504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~  580 (829)
T KOG2280|consen  504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSS  580 (829)
T ss_pred             CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHH
Confidence             355677777777777788877777765421111    00122233444555555555555555544443320   0000


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhCCC-CChhhHHHHHHHHHhcCCchHHHHHHH--HHH----hcCCcccHHHHHHHHHH
Q 036290          385 TSSLIYMFCRCGAVEMAHSVFDNVSY-KNITTWNELLSGYCFNCCDADVLKTFC--NIW----ESGVEVNGCTFFYVVET  457 (796)
Q Consensus       385 ~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~--~m~----~~g~~p~~~t~~~ll~~  457 (796)
                      +.      -...+...|..++....+ .|..+    +..+.+.++-.+++.-|.  ...    ..|..|+.   ...-.+
T Consensus       581 l~------~~l~~~p~a~~lY~~~~r~~~~~~----l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~  647 (829)
T KOG2280|consen  581 LF------MTLRNQPLALSLYRQFMRHQDRAT----LYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANA  647 (829)
T ss_pred             HH------HHHHhchhhhHHHHHHHHhhchhh----hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHH
Confidence            00      000111122222222111 11100    001111222222221111  000    01222222   222333


Q ss_pred             hcccCcHHHHHHH----------HHHHH-HhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHH
Q 036290          458 CCRSENQQMVGQI----------HGAII-KTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVH  526 (796)
Q Consensus       458 ~~~~~~~~~a~~~----------~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~  526 (796)
                      +.+........+.          .+.+. +.|..-..-+.+-.+.-+...|+...|.++-.+.+-||-..|-.-+.+++.
T Consensus       648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~  727 (829)
T KOG2280|consen  648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALAD  727 (829)
T ss_pred             HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHh
Confidence            3333331111111          11111 123333334444455555566666666666666666666666666666666


Q ss_pred             cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 036290          527 QGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMA  606 (796)
Q Consensus       527 ~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  606 (796)
                      .+++++-.++-+.++      .+.-|..+..+|.+.|+.++|.+++.....         +.-.+.+|.+.|++.+|.+.
T Consensus       728 ~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~  792 (829)
T KOG2280|consen  728 IKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADL  792 (829)
T ss_pred             hhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHH
Confidence            666665554444322      134555566666666666666665543311         11345566666666666554


Q ss_pred             H
Q 036290          607 F  607 (796)
Q Consensus       607 ~  607 (796)
                      -
T Consensus       793 A  793 (829)
T KOG2280|consen  793 A  793 (829)
T ss_pred             H
Confidence            4

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.39  E-value=0.051  Score=52.25  Aligned_cols=110  Identities=17%  Similarity=0.208  Sum_probs=80.6

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc---CCHHHHHHHHHHhHhhcCCCCC-ch
Q 036290          614 NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHK---GLVDKGCLLFKSMDSQYGMQPS-PD  688 (796)
Q Consensus       614 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~---g~~~~A~~~~~~~~~~~~~~p~-~~  688 (796)
                      .|...|-.|...|...|+++.|..-|.+..+  +.| +...+..+..++..+   ..-.++..+|+++.   ...|+ +.
T Consensus       154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al---~~D~~~ir  228 (287)
T COG4235         154 GDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQAL---ALDPANIR  228 (287)
T ss_pred             CCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH---hcCCccHH
Confidence            3888888999999999999999998888887  566 455555555555332   24567888888888   55666 67


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 036290          689 CYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVYRSLLSG  728 (796)
Q Consensus       689 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~  728 (796)
                      ....|...+...|++.+|...++.| ..-|....+..++..
T Consensus       229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~  269 (287)
T COG4235         229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER  269 (287)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence            7777888888899999999999888 444444455555543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.26  E-value=0.0035  Score=48.29  Aligned_cols=61  Identities=18%  Similarity=0.150  Sum_probs=40.6

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhC-----CCC---CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 036290          688 DCYGCLVDMLSRNGYLEDAKHVIEIM-----PFQ---PS-PTVYRSLLSGCRIHGNKELGEWASEKLLLL  748 (796)
Q Consensus       688 ~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  748 (796)
                      .+|+.+..+|.+.|++++|++.+++.     ...   |+ ..++..+..++...|++++|++.+++++++
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            45666777777777777777777665     122   22 346677777788888888888888877754

...

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.19  E-value=0.36  Score=48.37  Aligned_cols=151  Identities=11%  Similarity=0.068  Sum_probs=70.9

Q ss_pred             HHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH--HhccCchHHHHHHHHHHHHhCCCCchh-HHHH----------
Q 036290          523 ALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNS--CAAIGAYQRTKSIHPFVIKLGFNTEVY-VASA----------  589 (796)
Q Consensus       523 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~----------  589 (796)
                      ++.-.|+.++|.+.-....+..  ++ ..+..++++  +-..++.+.+...+++..+.++..... ....          
T Consensus       178 cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~  254 (486)
T KOG0550|consen  178 CLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKE  254 (486)
T ss_pred             hhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHh
Confidence            3445567777766665554331  11 223333332  234556666666666655544331111 0001          


Q ss_pred             HHHHHHhcCCHHHHHHHHhccCCC------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHh
Q 036290          590 VIDAYAKCGDIKGARMAFDQSFNS------NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQ-ATFVSVMSACS  662 (796)
Q Consensus       590 li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~  662 (796)
                      -..-..+.|++..|.+.|.+.+..      ++...|........+.|+.++|+.--++..+  +.|.. ..|..-..++.
T Consensus       255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l  332 (486)
T KOG0550|consen  255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHL  332 (486)
T ss_pred             hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHH
Confidence            112233456666666666555443      2334444455555556666666666555554  33311 11222223344


Q ss_pred             ccCCHHHHHHHHHHhH
Q 036290          663 HKGLVDKGCLLFKSMD  678 (796)
Q Consensus       663 ~~g~~~~A~~~~~~~~  678 (796)
                      ..++|++|.+.++...
T Consensus       333 ~le~~e~AV~d~~~a~  348 (486)
T KOG0550|consen  333 ALEKWEEAVEDYEKAM  348 (486)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4555666666665555

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.03  E-value=0.07  Score=45.07  Aligned_cols=79  Identities=11%  Similarity=0.214  Sum_probs=42.3

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHH---------------HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhc
Q 036290          617 IVYNTLIMAYAHHGLVSEAMEIFDKMK---------------LANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQY  681 (796)
Q Consensus       617 ~~~~~li~~~~~~g~~~~A~~~~~~m~---------------~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~  681 (796)
                      .++..++.++++.|+.+....+++..=               .....|+..+..+++.+|+..|++..|+++++...+.+
T Consensus         3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y   82 (126)
T PF12921_consen    3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY   82 (126)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence            344555555555555555555554432               11233555555666666666666666666666666555


Q ss_pred             CCCCCchHHHHHHH
Q 036290          682 GMQPSPDCYGCLVD  695 (796)
Q Consensus       682 ~~~p~~~~~~~l~~  695 (796)
                      +++.+..+|..|+.
T Consensus        83 ~I~i~~~~W~~Ll~   96 (126)
T PF12921_consen   83 PIPIPKEFWRRLLE   96 (126)
T ss_pred             CCCCCHHHHHHHHH
Confidence            55555555555444

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.96  E-value=0.21  Score=46.68  Aligned_cols=143  Identities=6%  Similarity=-0.027  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchH-----HHH
Q 036290          618 VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDC-----YGC  692 (796)
Q Consensus       618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~-----~~~  692 (796)
                      ..++++..+.-.|.+.-.+..+.+.++..-+-+......|.+.-.+.|+.+.|..+|++..+. .-..+...     ...
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n  257 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMN  257 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhh
Confidence            445666777777888888888999988543346777778888888899999999999987755 22333222     333


Q ss_pred             HHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290          693 LVDMLSRNGYLEDAKHVIEIMP-FQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK  761 (796)
Q Consensus       693 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  761 (796)
                      ....|.-+.++.+|...+.+.. ..| |+...|.-.-+..-.|+...|.+..+.+++..|.....-.++.|
T Consensus       258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~n  328 (366)
T KOG2796|consen  258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFN  328 (366)
T ss_pred             hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHH
Confidence            3445666778888888888873 223 44444555555666789999999999999999987666655555

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.91  E-value=0.055  Score=47.80  Aligned_cols=71  Identities=20%  Similarity=0.380  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHh----hcCCCCCchHH
Q 036290          618 VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDS----QYGMQPSPDCY  690 (796)
Q Consensus       618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~~~~  690 (796)
                      ....++..+...|++++|..+++++..  ..| |...|..+|.++...|+...|.+.|+++.+    +.|+.|++.+-
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~  139 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR  139 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence            445666777788888888888888888  667 777888888888888888888888887753    45788876554

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=95.89  E-value=1.6  Score=41.05  Aligned_cols=61  Identities=20%  Similarity=0.171  Sum_probs=35.6

Q ss_pred             HHHHHHcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCC
Q 036290          521 MSALVHQGHNHEAVTIFHSLVEAGE--KPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFN  581 (796)
Q Consensus       521 i~~~~~~~~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  581 (796)
                      ...+...|++.+|.+.|+++...-.  +--....-.+..++.+.|+++.|...++.+++.-+.
T Consensus        12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~   74 (203)
T PF13525_consen   12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN   74 (203)
T ss_dssp             HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            3455667778888888887765421  111233445566677777777777777776664433

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=95.77  E-value=2.4  Score=42.35  Aligned_cols=215  Identities=13%  Similarity=0.063  Sum_probs=117.1

Q ss_pred             HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHH-hCCCCchhHH--HHHHHHH--H-hcCC
Q 036290          526 HQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIK-LGFNTEVYVA--SAVIDAY--A-KCGD  599 (796)
Q Consensus       526 ~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~--~~li~~~--~-~~g~  599 (796)
                      +.|..+.|.+.-.+.-..- +--.......+...|..|+++.|+++++.-.. .-+.++..--  ..|+.+-  . -..+
T Consensus       166 r~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad  244 (531)
T COG3898         166 RLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD  244 (531)
T ss_pred             hcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence            3455555555444443221 11223445555555666666666665554443 2222222111  1111110  0 0122


Q ss_pred             HHHHHHHHhccCCC-CChh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 036290          600 IKGARMAFDQSFNS-NDVI-VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSM  677 (796)
Q Consensus       600 ~~~A~~~~~~~~~~-~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~  677 (796)
                      ...|...-.+..+- ||.. .-..-..++.+.|+..++-++++.+-+..  |....+..  ....+.|+  .++.-+++.
T Consensus       245 p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~l--Y~~ar~gd--ta~dRlkRa  318 (531)
T COG3898         245 PASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALL--YVRARSGD--TALDRLKRA  318 (531)
T ss_pred             hHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHH--HHHhcCCC--cHHHHHHHH
Confidence            33444333233332 3332 22334567888888888888888888743  44433322  22344554  333334443


Q ss_pred             HhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHc
Q 036290          678 DSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVYRSLLSGCRIH-GNKELGEWASEKLLL  747 (796)
Q Consensus       678 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~  747 (796)
                      .+--.++|+ .+....+..+-...|++..|..--+.. ...|....|-.|...-... ||-.++.+.+-+.++
T Consensus       319 ~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         319 KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence            333356676 666677778888888888887666665 5678888888787775444 888888888888876

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=95.76  E-value=0.05  Score=41.07  Aligned_cols=53  Identities=13%  Similarity=0.165  Sum_probs=32.5

Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 036290          624 MAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMD  678 (796)
Q Consensus       624 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~  678 (796)
                      ..|.+.+++++|.++++++..  ..| +...+......+...|++++|.+.|+...
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l   56 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERAL   56 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence            345566666666666666666  445 34445555566666666666666666666

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=95.74  E-value=0.18  Score=42.12  Aligned_cols=57  Identities=4%  Similarity=-0.060  Sum_probs=35.3

Q ss_pred             HHHHhcCCchHHHHHHHHHHhcCCccc--HHHHHHHHHHhcccCcHHHHHHHHHHHHHh
Q 036290          421 SGYCFNCCDADVLKTFCNIWESGVEVN--GCTFFYVVETCCRSENQQMVGQIHGAIIKT  477 (796)
Q Consensus       421 ~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~  477 (796)
                      .++-..|+.++|+.+|++....|....  ...+..+-+++...|++++|..+++.....
T Consensus         9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~   67 (120)
T PF12688_consen    9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE   67 (120)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            445566777777777777777665544  223444555566666666666666666543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.65  E-value=0.62  Score=43.67  Aligned_cols=141  Identities=9%  Similarity=0.034  Sum_probs=96.9

Q ss_pred             hhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHH----
Q 036290          414 TTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSL----  489 (796)
Q Consensus       414 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----  489 (796)
                      ...+.++..+.-.|.+.-.+.++++..+...+.++.....+.+...+.|+.+.|...++...+..-..+....+.+    
T Consensus       178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n  257 (366)
T KOG2796|consen  178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN  257 (366)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence            3556677777778888888899999888776777778888888888899999999999877664334443333333    


Q ss_pred             -HHHHHhcCCcchHHHHHhcCCCC---CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036290          490 -IKSYVNFGQLDNSFEFSNGAERL---DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTIL  556 (796)
Q Consensus       490 -~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll  556 (796)
                       ...|.-.+++..|...++++...   ++..-|.-.-+..-.|+..+|++.++.|.+.  .|...+-++++
T Consensus       258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~  326 (366)
T KOG2796|consen  258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL  326 (366)
T ss_pred             hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence             33455566777777777777653   4444444444445567888888888888765  55555544433

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.63  E-value=0.31  Score=41.64  Aligned_cols=20  Identities=15%  Similarity=0.112  Sum_probs=16.2

Q ss_pred             hHHHHHHHHHHHccCCCCCc
Q 036290          735 KELGEWASEKLLLLLPKNDA  754 (796)
Q Consensus       735 ~~~A~~~~~~~~~~~p~~~~  754 (796)
                      ...|...|+.+++.-|++.-
T Consensus       115 ~~~A~~~f~~lv~~yP~S~y  134 (142)
T PF13512_consen  115 ARQAFRDFEQLVRRYPNSEY  134 (142)
T ss_pred             HHHHHHHHHHHHHHCcCChh
Confidence            56888889999999888654

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=95.56  E-value=2.9  Score=41.82  Aligned_cols=189  Identities=13%  Similarity=0.112  Sum_probs=101.1

Q ss_pred             hHHHHHHHHHHcCChhHHHHHHHHHHHc-CCCCCHH--HHHHHHHHHhc---cCchHHHHHHHHHHHHhCCCCchhHHH-
Q 036290          516 SWGAMMSALVHQGHNHEAVTIFHSLVEA-GEKPDEY--ILGTILNSCAA---IGAYQRTKSIHPFVIKLGFNTEVYVAS-  588 (796)
Q Consensus       516 ~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~--t~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~-  588 (796)
                      .+...+...|..|+|+.|+++++.-+.. -+.++..  .-..|+.+-..   ..+...|...-.+.  ..+.|+..--. 
T Consensus       190 A~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a--~KL~pdlvPaav  267 (531)
T COG3898         190 AARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEA--NKLAPDLVPAAV  267 (531)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH--hhcCCccchHHH
Confidence            4455566666666666666666654332 2233321  12222222111   11223333332222  23344433222 


Q ss_pred             HHHHHHHhcCCHHHHHHHHhccCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCC-CHHHHHHHHHHHhccC
Q 036290          589 AVIDAYAKCGDIKGARMAFDQSFNS-NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKL-ANLQP-SQATFVSVMSACSHKG  665 (796)
Q Consensus       589 ~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p-~~~t~~~ll~~~~~~g  665 (796)
                      .-..++.+.|+..++-.+++.+-+. |.+..+..  ..+.+.|+  .+..-+++... ..++| +..+...+..+-...|
T Consensus       268 ~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~l--Y~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~  343 (531)
T COG3898         268 VAARALFRDGNLRKGSKILETAWKAEPHPDIALL--YVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAG  343 (531)
T ss_pred             HHHHHHHhccchhhhhhHHHHHHhcCCChHHHHH--HHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhcc
Confidence            2345677777777777777444332 33333322  22344444  23333333222 11556 4456666777778888


Q ss_pred             CHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhc-CChHHHHHHHHhC
Q 036290          666 LVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRN-GYLEDAKHVIEIM  713 (796)
Q Consensus       666 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~  713 (796)
                      ++..|..--+...   ...|....|..|.+.-... |+-.++..++-+.
T Consensus       344 e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa  389 (531)
T COG3898         344 EFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA  389 (531)
T ss_pred             chHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence            8888887777666   5678888888888877665 8888888888766

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.54  E-value=0.029  Score=34.57  Aligned_cols=33  Identities=30%  Similarity=0.115  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 036290          720 TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKN  752 (796)
Q Consensus       720 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  752 (796)
                      ..|..+..++...|++++|++.++++++++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            467888999999999999999999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK15331 chaperone protein SicA; Provisional

Probab=95.44  E-value=0.086  Score=46.06  Aligned_cols=84  Identities=13%  Similarity=0.112  Sum_probs=36.5

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChH
Q 036290          626 YAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLE  704 (796)
Q Consensus       626 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  704 (796)
                      +-..|++++|..+|.-+.-  ..| +..-+..|..+|-..++++.|+..|.....- + .-|+..+-....++...|+.+
T Consensus        47 ~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~  122 (165)
T PRK15331         47 FYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAA  122 (165)
T ss_pred             HHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHH
Confidence            3445555555555555544  333 2222233333333445555555555444311 1 111222333455555555555


Q ss_pred             HHHHHHHhC
Q 036290          705 DAKHVIEIM  713 (796)
Q Consensus       705 ~A~~~~~~~  713 (796)
                      .|...|+..
T Consensus       123 ~A~~~f~~a  131 (165)
T PRK15331        123 KARQCFELV  131 (165)
T ss_pred             HHHHHHHHH
Confidence            555555444

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.43  E-value=0.024  Score=35.00  Aligned_cols=33  Identities=24%  Similarity=0.138  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 036290          720 TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKN  752 (796)
Q Consensus       720 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  752 (796)
                      .+|..+..++...|++++|+..++++++++|++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            578889999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.33  E-value=0.15  Score=48.45  Aligned_cols=100  Identities=20%  Similarity=0.259  Sum_probs=52.8

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHH
Q 036290          654 FVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM----PFQP-SPTVYRSLLS  727 (796)
Q Consensus       654 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~  727 (796)
                      |+.-+. +.+.|++..|...|....+.+--.+- +..+.-|..++...|++++|..+|..+    +..| -+..+-.|..
T Consensus       145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         145 YNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            444333 23345566666666666533211000 333444666666666666666666555    2222 2244555555


Q ss_pred             HHHhcCChHHHHHHHHHHHccCCCCCc
Q 036290          728 GCRIHGNKELGEWASEKLLLLLPKNDA  754 (796)
Q Consensus       728 ~~~~~g~~~~A~~~~~~~~~~~p~~~~  754 (796)
                      +....|+.++|...++++.+.-|+.+.
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~a  250 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDA  250 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence            566666666666666666666665544

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.31  E-value=2.8  Score=40.13  Aligned_cols=198  Identities=16%  Similarity=0.107  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHHhccCchHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C-ChhHHHHHHH-
Q 036290          549 EYILGTILNSCAAIGAYQRTKSIHPFVIKL-GFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N-DVIVYNTLIM-  624 (796)
Q Consensus       549 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~li~-  624 (796)
                      ...+......+...+....+...+...... ........+......+...++...+.+.+...... + +......... 
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG  138 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence            344455555555556666655555554442 22334445555556666666677777777444442 1 2122223333 


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC--chHHHHHHHHHH
Q 036290          625 AYAHHGLVSEAMEIFDKMKLANLQP----SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS--PDCYGCLVDMLS  698 (796)
Q Consensus       625 ~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~  698 (796)
                      .+...|+++.|...+++...  ..|    ....+......+...++.+.+...+....   ...++  ...+..+...+.
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~  213 (291)
T COG0457         139 ALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKAL---KLNPDDDAEALLNLGLLYL  213 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH---hhCcccchHHHHHhhHHHH
Confidence            67788888888888888855  333    22333444444667788899999888887   33344  567778888888


Q ss_pred             hcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 036290          699 RNGYLEDAKHVIEIM-PFQPS-PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPK  751 (796)
Q Consensus       699 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  751 (796)
                      ..++++.|...+... ...|+ ...+..+...+...|+.+.+...+++.++..|.
T Consensus       214 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         214 KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            888889998888877 44454 455555555555667789999999999888886

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.16  E-value=0.057  Score=41.45  Aligned_cols=60  Identities=15%  Similarity=0.179  Sum_probs=37.0

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhHhh---cCC-CCC-chHHHHHHHHHHhcCChHHHHHHHHh
Q 036290          653 TFVSVMSACSHKGLVDKGCLLFKSMDSQ---YGM-QPS-PDCYGCLVDMLSRNGYLEDAKHVIEI  712 (796)
Q Consensus       653 t~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~  712 (796)
                      +|+.+...|...|++++|+..|++..+-   .|- .|+ ..++..+..++...|++++|++++++
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~   71 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK   71 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4556666666677777777666666532   111 122 45667777777778888887777765

...

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=95.15  E-value=0.48  Score=47.31  Aligned_cols=126  Identities=12%  Similarity=-0.019  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhccCCC----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC-CCHH
Q 036290          586 VASAVIDAYAKCGDIKGARMAFDQSFNS----N----DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLA----NLQ-PSQA  652 (796)
Q Consensus       586 ~~~~li~~~~~~g~~~~A~~~~~~~~~~----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~  652 (796)
                      .|..|...|.-.|+++.|+...+..+.-    .    .-..+..+..++.-.|+++.|.+.|+.-...    |-+ ....
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence            3444444444556677666555332221    1    2234555666666667777777666654321    211 1223


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhHh---hcC-CCCCchHHHHHHHHHHhcCChHHHHHHHH
Q 036290          653 TFVSVMSACSHKGLVDKGCLLFKSMDS---QYG-MQPSPDCYGCLVDMLSRNGYLEDAKHVIE  711 (796)
Q Consensus       653 t~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  711 (796)
                      +.-+|..+|.-..+++.|+.++.+=..   ..+ ..-....+.+|..+|..-|..++|+.+.+
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae  339 (639)
T KOG1130|consen  277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE  339 (639)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            344455555555555566555543221   000 11112334445555555555555554443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.14  E-value=0.51  Score=50.68  Aligned_cols=131  Identities=18%  Similarity=0.102  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhccCCHHHHHHHHHHhHhhcCC--CCCchHH
Q 036290          618 VYNTLIMAYAH----HGLVSEAMEIFDKMKLANLQPSQATFVSVM-SACSHKGLVDKGCLLFKSMDSQYGM--QPSPDCY  690 (796)
Q Consensus       618 ~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~g~~~~A~~~~~~~~~~~~~--~p~~~~~  690 (796)
                      .|...+..++.    ....+.|.++++.+.+  .-|+...|...- +.+...|+.++|++.|+++.....-  +....++
T Consensus       231 ~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~  308 (468)
T PF10300_consen  231 WYHLVVPSFLGIDGEDVPLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCY  308 (468)
T ss_pred             HHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHH
Confidence            34444444443    3467889999999988  568877765544 4567789999999999876521011  1124455


Q ss_pred             HHHHHHHHhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHH-HHhcCCh-------HHHHHHHHHHHccCC
Q 036290          691 GCLVDMLSRNGYLEDAKHVIEIMP-F-QPSPTVYRSLLSG-CRIHGNK-------ELGEWASEKLLLLLP  750 (796)
Q Consensus       691 ~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~-~~~~g~~-------~~A~~~~~~~~~~~p  750 (796)
                      --+...+.-.++|++|.+.+.++. . .-...+|.-+..+ +...|+.       ++|..+++++-....
T Consensus       309 ~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  309 FELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             HHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence            667788888999999999999883 2 2234455545444 4566877       788888887766544

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=95.10  E-value=0.22  Score=42.13  Aligned_cols=84  Identities=17%  Similarity=0.236  Sum_probs=67.1

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHhHh--------------hcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC--
Q 036290          650 SQATFVSVMSACSHKGLVDKGCLLFKSMDS--------------QYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM--  713 (796)
Q Consensus       650 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~--------------~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--  713 (796)
                      |..++..++.++++.|+.+....+++..-.              .....|+..++.+++.+|+..|++..|+++++..  
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~   80 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR   80 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            457888999999999999999998876531              1235577888999999999999999999999877  


Q ss_pred             --CCCCCHHHHHHHHHHHHhcC
Q 036290          714 --PFQPSPTVYRSLLSGCRIHG  733 (796)
Q Consensus       714 --~~~p~~~~~~~l~~~~~~~g  733 (796)
                        +++-+..+|..|+.-+...-
T Consensus        81 ~Y~I~i~~~~W~~Ll~W~~v~s  102 (126)
T PF12921_consen   81 KYPIPIPKEFWRRLLEWAYVLS  102 (126)
T ss_pred             HcCCCCCHHHHHHHHHHHHHhc
Confidence              56656789998887754443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=94.87  E-value=2  Score=43.73  Aligned_cols=163  Identities=16%  Similarity=0.091  Sum_probs=85.9

Q ss_pred             HHHHHHhccCchHHHHHHHHHHHHhC---CCCchhHHHHHHHHHHh---cCCHHHHHHHHhccCCC---CChhHHHHHHH
Q 036290          554 TILNSCAAIGAYQRTKSIHPFVIKLG---FNTEVYVASAVIDAYAK---CGDIKGARMAFDQSFNS---NDVIVYNTLIM  624 (796)
Q Consensus       554 ~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~---~~~~~~~~li~  624 (796)
                      .++-+|....+++...++++.+...-   +.-+..+--...-++.+   .|+.++|++++...+..   ++..+|..+.+
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR  225 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR  225 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            34445666666666666666665531   22223333344455555   66777777666442322   45666666655


Q ss_pred             HHHh---------cCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhccC-CHHHHHHHH---HHhHhhcCC---CC
Q 036290          625 AYAH---------HGLVSEAMEIFDKMKLANLQPSQAT---FVSVMSACSHKG-LVDKGCLLF---KSMDSQYGM---QP  685 (796)
Q Consensus       625 ~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~g-~~~~A~~~~---~~~~~~~~~---~p  685 (796)
                      .|..         ....++|...|.+.-+  +.||..+   +..|+....... .-.+..++-   .....+.|.   ..
T Consensus       226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~  303 (374)
T PF13281_consen  226 IYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ  303 (374)
T ss_pred             HHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence            5432         1236778888877766  4565543   233333322211 111222222   121111122   22


Q ss_pred             CchHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 036290          686 SPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS  718 (796)
Q Consensus       686 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~  718 (796)
                      +-..+.+++.+..-.|+.++|.+..++| ..+|.
T Consensus       304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~  337 (374)
T PF13281_consen  304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP  337 (374)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence            3344567888889999999999999998 44444

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=94.82  E-value=0.083  Score=54.19  Aligned_cols=61  Identities=15%  Similarity=0.111  Sum_probs=48.4

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCc----hHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          650 SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSP----DCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       650 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      +...++.+..+|.+.|++++|+..|++..   .+.|+.    ..|..+..+|...|+.++|++.+++.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rAL---eL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA  138 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETAL---ELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA  138 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            55667888888888888888888888877   567773    34778888888888888888888877

>PRK11906 transcriptional regulator; Provisional

Probab=94.73  E-value=0.49  Score=48.89  Aligned_cols=142  Identities=15%  Similarity=0.088  Sum_probs=87.9

Q ss_pred             CHHHHHHHHhccCCC----C-ChhHHHHHHHHHHhc---------CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc
Q 036290          599 DIKGARMAFDQSFNS----N-DVIVYNTLIMAYAHH---------GLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSH  663 (796)
Q Consensus       599 ~~~~A~~~~~~~~~~----~-~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~  663 (796)
                      ..+.|+.+|.+.+..    | ....|..+..++...         ....+|.++.++..+  +.| |......+..+...
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~  350 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGL  350 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Confidence            456777778776622    2 234444444443321         124456666666666  455 66666666666677


Q ss_pred             cCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHh-CCCCCCH---HHHHHHHHHHHhcCChHHH
Q 036290          664 KGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEI-MPFQPSP---TVYRSLLSGCRIHGNKELG  738 (796)
Q Consensus       664 ~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~---~~~~~l~~~~~~~g~~~~A  738 (796)
                      .|+++.|...|++..   .+.|+ ..+|......+.-+|+.++|.+.+++ +...|..   .+....+..|+.+ ..+.|
T Consensus       351 ~~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~  426 (458)
T PRK11906        351 SGQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNN  426 (458)
T ss_pred             hcchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhh
Confidence            777888888888877   67787 66666667777778888888888887 4666644   2233334345444 46667


Q ss_pred             HHHHHHHH
Q 036290          739 EWASEKLL  746 (796)
Q Consensus       739 ~~~~~~~~  746 (796)
                      +.++-+-.
T Consensus       427 ~~~~~~~~  434 (458)
T PRK11906        427 IKLYYKET  434 (458)
T ss_pred             HHHHhhcc
Confidence            77665533

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=94.69  E-value=0.33  Score=48.75  Aligned_cols=97  Identities=10%  Similarity=0.014  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHH-HHHHHH
Q 036290          652 ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVY-RSLLSG  728 (796)
Q Consensus       652 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~  728 (796)
                      .+++.+.-++.+.+++..|++......   .+.|+ +..+..-..++...|+++.|+..|+++ .+.|+...- ..++.+
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvL---e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l  334 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVL---ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKL  334 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHH---hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            456777778889999999999998887   45555 777777889999999999999999998 678866544 445544


Q ss_pred             HHhcC-ChHHHHHHHHHHHccCCC
Q 036290          729 CRIHG-NKELGEWASEKLLLLLPK  751 (796)
Q Consensus       729 ~~~~g-~~~~A~~~~~~~~~~~p~  751 (796)
                      -.+.. ..+...++|..|+...+.
T Consensus       335 ~~k~~~~~~kekk~y~~mF~k~~~  358 (397)
T KOG0543|consen  335 KQKIREYEEKEKKMYANMFAKLAE  358 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccc
Confidence            44443 344558899999976654

>PRK15331 chaperone protein SicA; Provisional

Probab=94.58  E-value=0.68  Score=40.60  Aligned_cols=84  Identities=10%  Similarity=-0.040  Sum_probs=46.1

Q ss_pred             HhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHH
Q 036290          661 CSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIMP--FQPSPTVYRSLLSGCRIHGNKEL  737 (796)
Q Consensus       661 ~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~  737 (796)
                      +...|++++|..+|+-+..   ..|. ..-+..|..++-..|++++|+..+....  ...|+........++...|+.+.
T Consensus        47 ~y~~Gk~~eA~~~F~~L~~---~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~  123 (165)
T PRK15331         47 FYNQGRLDEAETFFRFLCI---YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK  123 (165)
T ss_pred             HHHCCCHHHHHHHHHHHHH---hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence            3456666666666665551   2222 3344455555666666666666665541  12233444455566666666666


Q ss_pred             HHHHHHHHHc
Q 036290          738 GEWASEKLLL  747 (796)
Q Consensus       738 A~~~~~~~~~  747 (796)
                      |+..|+.+++
T Consensus       124 A~~~f~~a~~  133 (165)
T PRK15331        124 ARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHh
Confidence            6666666655

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=94.54  E-value=0.68  Score=43.47  Aligned_cols=54  Identities=19%  Similarity=0.196  Sum_probs=25.6

Q ss_pred             HHHHHhcCCHHHHHHHHhccCCC-C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036290          591 IDAYAKCGDIKGARMAFDQSFNS-N----DVIVYNTLIMAYAHHGLVSEAMEIFDKMKL  644 (796)
Q Consensus       591 i~~~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  644 (796)
                      ...+...|++++|.+.|+..... |    -....-.++.++-+.|+++.|...++++.+
T Consensus        12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~   70 (203)
T PF13525_consen   12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK   70 (203)
T ss_dssp             HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33444556666666665333321 1    112333445555556666666666666555

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=94.50  E-value=12  Score=43.41  Aligned_cols=157  Identities=15%  Similarity=0.176  Sum_probs=86.3

Q ss_pred             CCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 036290          497 GQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVI  576 (796)
Q Consensus       497 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~  576 (796)
                      +++++|+.-+..+.   ...|...+.---++|-+.+|+.++        .|+...+..+..+|+..            +.
T Consensus       894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~h------------L~  950 (1265)
T KOG1920|consen  894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADH------------LR  950 (1265)
T ss_pred             HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHH------------HH
Confidence            34555554444443   223333444444567777776654        45665555555444321            11


Q ss_pred             HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--H
Q 036290          577 KLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQAT--F  654 (796)
Q Consensus       577 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~  654 (796)
                      +.      ..|.--.-+|.++|+.++|++.+                   ...|+|.+|+.+..++..   .-+...  -
T Consensus       951 ~~------~~~~~Aal~Ye~~GklekAl~a~-------------------~~~~dWr~~l~~a~ql~~---~~de~~~~a 1002 (1265)
T KOG1920|consen  951 EE------LMSDEAALMYERCGKLEKALKAY-------------------KECGDWREALSLAAQLSE---GKDELVILA 1002 (1265)
T ss_pred             Hh------ccccHHHHHHHHhccHHHHHHHH-------------------HHhccHHHHHHHHHhhcC---CHHHHHHHH
Confidence            10      11122233566677777776655                   567788888877776643   112221  2


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          655 VSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       655 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      ..|..-+...++.-+|-++..+..++         ....+..|++...|++|..+....
T Consensus      1003 ~~L~s~L~e~~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred             HHHHHHHHHcccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence            45566677777777777776665533         234556677777788887776655

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=94.45  E-value=0.19  Score=47.37  Aligned_cols=109  Identities=10%  Similarity=0.060  Sum_probs=79.1

Q ss_pred             HHHhcccC--CCCcchHHHHHHHHHhc-----CCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccC------------
Q 036290           99 LRVFDEMA--ERNLVSWTLIVSAAIQN-----GEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMG------------  159 (796)
Q Consensus        99 ~~~~~~~~--~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~------------  159 (796)
                      .+.|+..+  ++|-.+|-+++..+...     ++.+-....++.|.+.|+.-|..+|+.||..+-+-.            
T Consensus        54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~  133 (406)
T KOG3941|consen   54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL  133 (406)
T ss_pred             hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence            44566555  57777888888877643     556666778889999999999999999998875532            


Q ss_pred             ----ChhHHHHHHHHHHHhcCCCChhHhhHHHHHHHccCCh-hHHHHHhhccC
Q 036290          160 ----ASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDV-AAAERVFYSIS  207 (796)
Q Consensus       160 ----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~  207 (796)
                          .-+-+..++++|...|+.||..+-..|++++++.|-. .+..++.-.|+
T Consensus       134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP  186 (406)
T KOG3941|consen  134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP  186 (406)
T ss_pred             hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence                2234678888999999999999888888888887653 33344444444

>PRK09687 putative lyase; Provisional

Probab=94.44  E-value=5.7  Score=39.34  Aligned_cols=121  Identities=11%  Similarity=-0.035  Sum_probs=62.7

Q ss_pred             CCCCchhhHHHHHHHHccCChhHHHHHhcccCCCCcchHHHHHHHHHhcCCc----hHHHHHHHHHHHCCCCCCcccHHH
Q 036290           75 FTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEF----DMGLKMYVDMKTNGFMPNEFAVGS  150 (796)
Q Consensus        75 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~----~~a~~~~~~m~~~~~~p~~~t~~~  150 (796)
                      ..+|..+....+.++.+.|..+-...+..-...+|...-...+.++.+.|+.    .++..++..+...  .|+...-..
T Consensus        33 ~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~  110 (280)
T PRK09687         33 DDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRAS  110 (280)
T ss_pred             hCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHH
Confidence            3566677777777777777644443333334556666666777777777764    3466666666332  244444444


Q ss_pred             HHHHHhccCChhH--HHHHHHHHHHhcCCCChhHhhHHHHHHHccCChh
Q 036290          151 VMKVCVSMGASEF--GYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVA  197 (796)
Q Consensus       151 ll~~~~~~~~~~~--a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~  197 (796)
                      .+.+++..+....  -....+.....-..++..+....+.++++.|+.+
T Consensus       111 A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~  159 (280)
T PRK09687        111 AINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEA  159 (280)
T ss_pred             HHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHH
Confidence            5555544432111  1112222222222334555555555555555433

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=94.25  E-value=0.36  Score=41.22  Aligned_cols=53  Identities=15%  Similarity=0.182  Sum_probs=27.5

Q ss_pred             HhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          661 CSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       661 ~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      ..+.|++++|.+.|+.+..++-..|- ....-.|+.+|.+.|++++|...+++.
T Consensus        20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF   73 (142)
T PF13512_consen   20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF   73 (142)
T ss_pred             HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            34455566666666655544333332 333444555555566665555555554

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=94.17  E-value=0.24  Score=49.74  Aligned_cols=74  Identities=19%  Similarity=0.095  Sum_probs=63.4

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290          688 DCYGCLVDMLSRNGYLEDAKHVIEIM-PFQ-PSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK  761 (796)
Q Consensus       688 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  761 (796)
                      .++..|.-++.+.+++.+|++..++. ... +|......-..++...|+++.|+..|+++++++|+|-.+..-|+.
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~  333 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIK  333 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            45778899999999999999999887 444 466777788899999999999999999999999999888766655

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=94.10  E-value=0.14  Score=45.29  Aligned_cols=66  Identities=21%  Similarity=0.312  Sum_probs=46.4

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCCHHH
Q 036290          653 TFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM--------PFQPSPTV  721 (796)
Q Consensus       653 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~~  721 (796)
                      +...++..+...|++++|..+++.+.   ...|. ...|..++.+|.+.|+..+|.+.|+++        ++.|++.+
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l---~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRAL---ALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHH---HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            34556667778889999999998888   34555 678888999999999999998888766        67777654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=94.08  E-value=0.35  Score=45.69  Aligned_cols=111  Identities=11%  Similarity=0.015  Sum_probs=80.9

Q ss_pred             HHHHHhhccC--CCCceeHHHHHHHHHhC-----CCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCC----------
Q 036290          198 AAERVFYSIS--SDDVGCWNAMIGGYAHC-----GYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVA----------  260 (796)
Q Consensus       198 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----------  260 (796)
                      ..+..|...+  +.|..+|-+.+..+...     +..+=....++.|.+.|+.-|..+|+.||..+-+..          
T Consensus        52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~  131 (406)
T KOG3941|consen   52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV  131 (406)
T ss_pred             chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence            3455666665  46777888888777543     556666777899999999999999999998865432          


Q ss_pred             ------CchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCH-HHHHHHHhhcC
Q 036290          261 ------DFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGM-DYAFKVFERMA  308 (796)
Q Consensus       261 ------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~  308 (796)
                            .-.-+..++++|..+|+-||..+-..|++++.+.+-. .+..++.-.|+
T Consensus       132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP  186 (406)
T KOG3941|consen  132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP  186 (406)
T ss_pred             HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence                  2344778889999999999999988899888877653 34444444444

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.02  E-value=0.52  Score=44.92  Aligned_cols=101  Identities=19%  Similarity=0.261  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHH
Q 036290          618 VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP--SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLV  694 (796)
Q Consensus       618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~  694 (796)
                      .|+.-+..+ +.|++..|...|....+..-.-  ....+--|..++...|++++|..+|..+.++++-.|. +..+.-|.
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            466665544 4567999999999998853110  2233556788999999999999999999988776666 68888999


Q ss_pred             HHHHhcCChHHHHHHHHhC-CCCCCH
Q 036290          695 DMLSRNGYLEDAKHVIEIM-PFQPSP  719 (796)
Q Consensus       695 ~~~~~~g~~~~A~~~~~~~-~~~p~~  719 (796)
                      .+..+.|+.++|..++++. .--|+.
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~YP~t  248 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKRYPGT  248 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence            9999999999999999988 334543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.01  E-value=2.6  Score=43.88  Aligned_cols=104  Identities=13%  Similarity=0.127  Sum_probs=73.2

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCH--HHHHHHHHH
Q 036290          653 TFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMP-F-QPSP--TVYRSLLSG  728 (796)
Q Consensus       653 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~--~~~~~l~~~  728 (796)
                      +-..+..++.+.|+.++|++.++++.+.+...-...+...|+.++...+.+.++..++.+.. . -|..  ..|+..+-.
T Consensus       261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk  340 (539)
T PF04184_consen  261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK  340 (539)
T ss_pred             hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence            33456677788999999999999998553222235567789999999999999999999884 1 3444  345554433


Q ss_pred             HHhcCCh---------------HHHHHHHHHHHccCCCCCcce
Q 036290          729 CRIHGNK---------------ELGEWASEKLLLLLPKNDAAH  756 (796)
Q Consensus       729 ~~~~g~~---------------~~A~~~~~~~~~~~p~~~~~~  756 (796)
                      ....||.               ..|.+.+.++++.+|.-+.+.
T Consensus       341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL  383 (539)
T PF04184_consen  341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL  383 (539)
T ss_pred             HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence            4433431               346788999999999877663

The molecular function of this protein is uncertain.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=93.79  E-value=17  Score=42.39  Aligned_cols=118  Identities=12%  Similarity=0.060  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036290          586 VASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKG  665 (796)
Q Consensus       586 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g  665 (796)
                      .|.-.++.--+.|-+.+|+.++ ..-.+.-...|.+....+...+.+++|.-.|+..-+         ..-.+.+|...|
T Consensus       910 ~~~e~~n~I~kh~Ly~~aL~ly-~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~  979 (1265)
T KOG1920|consen  910 YFPECKNYIKKHGLYDEALALY-KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECG  979 (1265)
T ss_pred             ccHHHHHHHHhcccchhhhhee-ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhc
Confidence            3444555556677777777777 222222333455555666677788888777766533         233567888899


Q ss_pred             CHHHHHHHHHHhHhhcCCCCC--chHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 036290          666 LVDKGCLLFKSMDSQYGMQPS--PDCYGCLVDMLSRNGYLEDAKHVIEIMPFQP  717 (796)
Q Consensus       666 ~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p  717 (796)
                      +|.+|+.+..++.    ..-+  ..+-..|+.-+...|++-+|.++..+..-.|
T Consensus       980 dWr~~l~~a~ql~----~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~ 1029 (1265)
T KOG1920|consen  980 DWREALSLAAQLS----EGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDP 1029 (1265)
T ss_pred             cHHHHHHHHHhhc----CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH
Confidence            9999999887664    1122  2223568888888999999999988874443

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=93.59  E-value=3.9  Score=35.56  Aligned_cols=64  Identities=17%  Similarity=0.247  Sum_probs=34.1

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhc-CChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 036290          654 FVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRN-GYLEDAKHVIEIMPFQPSPTVYRSLLSGCR  730 (796)
Q Consensus       654 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~  730 (796)
                      ...+++.|.+.+.++++..++.++. .         +...+..+... ++.+.|.+++.+-   .++..|..++..+.
T Consensus        72 ~~~~~~~c~~~~l~~~~~~l~~k~~-~---------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l  136 (140)
T smart00299       72 IEKVGKLCEKAKLYEEAVELYKKDG-N---------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALL  136 (140)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHhhc-C---------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence            4445556666666666666665543 1         22233333333 6666666666653   24556666665554

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=93.38  E-value=1.3  Score=36.63  Aligned_cols=87  Identities=17%  Similarity=0.109  Sum_probs=59.6

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC--chHHHHHHHHHHhcC
Q 036290          625 AYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS--PDCYGCLVDMLSRNG  701 (796)
Q Consensus       625 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g  701 (796)
                      +.+..|+.+.|++.|.+...  +-| +...||.-.+++.-+|+.++|++-+++..+-.|-+..  -..|..-...|...|
T Consensus        52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g  129 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG  129 (175)
T ss_pred             HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence            45667788888888887777  555 6677888888888888888888887777754333322  223444455566778


Q ss_pred             ChHHHHHHHHhC
Q 036290          702 YLEDAKHVIEIM  713 (796)
Q Consensus       702 ~~~~A~~~~~~~  713 (796)
                      +-+.|..-|+..
T Consensus       130 ~dd~AR~DFe~A  141 (175)
T KOG4555|consen  130 NDDAARADFEAA  141 (175)
T ss_pred             chHHHHHhHHHH
Confidence            888887777765

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=93.06  E-value=0.15  Score=31.29  Aligned_cols=33  Identities=30%  Similarity=0.142  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 036290          720 TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKN  752 (796)
Q Consensus       720 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  752 (796)
                      .+|..+...+...|+.++|...++++++++|++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            367788888999999999999999999999853

...

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.04  E-value=10  Score=37.66  Aligned_cols=18  Identities=17%  Similarity=-0.241  Sum_probs=11.3

Q ss_pred             HHhcCChHHHHHHHHHHH
Q 036290          729 CRIHGNKELGEWASEKLL  746 (796)
Q Consensus       729 ~~~~g~~~~A~~~~~~~~  746 (796)
                      +.+.+++..|.+.++-++
T Consensus       256 ~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  256 HYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHhhcCHHHHHHHHHHHH
Confidence            445667777777766543

It is also involved in sporulation [].

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=93.04  E-value=0.55  Score=38.81  Aligned_cols=89  Identities=20%  Similarity=0.129  Sum_probs=70.2

Q ss_pred             HHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCH--HHHHHHHHHHHhc
Q 036290          660 ACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM----PFQPSP--TVYRSLLSGCRIH  732 (796)
Q Consensus       660 ~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~--~~~~~l~~~~~~~  732 (796)
                      +++..|+++.|++.|.+..   .+-|. +..|+.-..++.-+|+.++|++-+++.    +-+...  ..|-.-...|...
T Consensus        52 alaE~g~Ld~AlE~F~qal---~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~  128 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQAL---CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL  128 (175)
T ss_pred             HHHhccchHHHHHHHHHHH---HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence            5678999999999999988   56665 889999999999999999999999887    212111  2344445558889


Q ss_pred             CChHHHHHHHHHHHccCCC
Q 036290          733 GNKELGEWASEKLLLLLPK  751 (796)
Q Consensus       733 g~~~~A~~~~~~~~~~~p~  751 (796)
                      |+.+.|+.-|+.+-++...
T Consensus       129 g~dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  129 GNDDAARADFEAAAQLGSK  147 (175)
T ss_pred             CchHHHHHhHHHHHHhCCH
Confidence            9999999999988776543

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.98  E-value=4.5  Score=36.54  Aligned_cols=128  Identities=16%  Similarity=0.023  Sum_probs=80.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHhccCCHHHHHHHHHHhHhhcCCCCC----chHHHH
Q 036290          619 YNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVS--VMSACSHKGLVDKGCLLFKSMDSQYGMQPS----PDCYGC  692 (796)
Q Consensus       619 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~--ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~  692 (796)
                      |..++.... .+.. +.....+++....-.....++..  +...+...|++++|..-++...   +...|    ...--.
T Consensus        57 Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l---~~t~De~lk~l~~lR  131 (207)
T COG2976          57 YQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQAL---AQTKDENLKALAALR  131 (207)
T ss_pred             HHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH---ccchhHHHHHHHHHH
Confidence            344444433 2333 44445555555322222222322  3456788899999999988776   22233    223335


Q ss_pred             HHHHHHhcCChHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 036290          693 LVDMLSRNGYLEDAKHVIEIMPFQPSP--TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKN  752 (796)
Q Consensus       693 l~~~~~~~g~~~~A~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  752 (796)
                      |.+.....|.+++|+.+++... .++.  .....-...+...||.++|+..|+++++.++++
T Consensus       132 LArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         132 LARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             HHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence            6778888999999999998763 2222  223444566889999999999999999987543

>PRK11906 transcriptional regulator; Provisional

Probab=92.96  E-value=3.1  Score=43.23  Aligned_cols=144  Identities=11%  Similarity=0.035  Sum_probs=96.5

Q ss_pred             chHHHHHHHHHHHH-hCCCCch-hHHHHHHHHHHh---------cCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcC
Q 036290          564 AYQRTKSIHPFVIK-LGFNTEV-YVASAVIDAYAK---------CGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHG  630 (796)
Q Consensus       564 ~~~~a~~~~~~~~~-~~~~~~~-~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g  630 (796)
                      ..+.|..+|.+... ....|+- ..|..+..++..         .....+|.+..+..+..  .|......+..+....+
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~  352 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG  352 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence            45678888888773 3444443 344444333322         22345566666555544  47777778888778888


Q ss_pred             ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC---chHHHHHHHHHHhcCChHHH
Q 036290          631 LVSEAMEIFDKMKLANLQPSQ-ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS---PDCYGCLVDMLSRNGYLEDA  706 (796)
Q Consensus       631 ~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A  706 (796)
                      +++.|...|++...  +.||. .+|......+.-.|+.++|.+.+++..   .+.|.   .......++.|+.. ..++|
T Consensus       353 ~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al---rLsP~~~~~~~~~~~~~~~~~~-~~~~~  426 (458)
T PRK11906        353 QAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSL---QLEPRRRKAVVIKECVDMYVPN-PLKNN  426 (458)
T ss_pred             chhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccCchhhHHHHHHHHHHHHcCC-chhhh
Confidence            89999999999998  77854 456666666778999999999999877   56676   44455556677654 45777


Q ss_pred             HHHHHhC
Q 036290          707 KHVIEIM  713 (796)
Q Consensus       707 ~~~~~~~  713 (796)
                      ++++-+-
T Consensus       427 ~~~~~~~  433 (458)
T PRK11906        427 IKLYYKE  433 (458)
T ss_pred             HHHHhhc
Confidence            7776544

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=92.87  E-value=3.7  Score=35.72  Aligned_cols=113  Identities=12%  Similarity=0.066  Sum_probs=75.6

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHH
Q 036290          617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDM  696 (796)
Q Consensus       617 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~  696 (796)
                      .....++..+...+.......+++.+...+ ..+....+.++..|++.+ .+...+.++.       .++.......++.
T Consensus         8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~   78 (140)
T smart00299        8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKL   78 (140)
T ss_pred             CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHH
Confidence            344567777777888888889999888776 346667888888887653 3444455542       1234445557778


Q ss_pred             HHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHH
Q 036290          697 LSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIH-GNKELGEWASEK  744 (796)
Q Consensus       697 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~  744 (796)
                      +.+.+.++++..++.+++.      |...+..+..+ ++++.|.+.+++
T Consensus        79 c~~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~  121 (140)
T smart00299       79 CEKAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK  121 (140)
T ss_pred             HHHcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh
Confidence            8888888888888888753      23333344444 777777777765

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.86  E-value=3  Score=44.19  Aligned_cols=162  Identities=15%  Similarity=0.081  Sum_probs=100.2

Q ss_pred             HHHHcCChhHHHHHHHHH-HHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 036290          523 ALVHQGHNHEAVTIFHSL-VEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIK  601 (796)
Q Consensus       523 ~~~~~~~~~~A~~~~~~m-~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  601 (796)
                      ...-.++++++.++...- .-.. -| ..-...++.-+.+.|-.+.|.++...-            ..-.+...+.|+++
T Consensus       270 ~av~~~d~~~v~~~i~~~~ll~~-i~-~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L~  335 (443)
T PF04053_consen  270 TAVLRGDFEEVLRMIAASNLLPN-IP-KDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNLD  335 (443)
T ss_dssp             HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-HH
T ss_pred             HHHHcCChhhhhhhhhhhhhccc-CC-hhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCHH
Confidence            344567777766666411 1111 12 344667777777788888888765432            23456778889999


Q ss_pred             HHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhc
Q 036290          602 GARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQY  681 (796)
Q Consensus       602 ~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~  681 (796)
                      .|.++. +.+  ++...|..|.......|+++-|++.|++..+         |..|+--|...|+.+.-.++.+....+ 
T Consensus       336 ~A~~~a-~~~--~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-  402 (443)
T PF04053_consen  336 IALEIA-KEL--DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-  402 (443)
T ss_dssp             HHHHHC-CCC--STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-
T ss_pred             HHHHHH-Hhc--CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-
Confidence            999877 333  3677999999999999999999999988754         556666677788877777776666533 


Q ss_pred             CCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 036290          682 GMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQP  717 (796)
Q Consensus       682 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p  717 (796)
                      |      -++....++.-.|+.++..+++.+.+..|
T Consensus       403 ~------~~n~af~~~~~lgd~~~cv~lL~~~~~~~  432 (443)
T PF04053_consen  403 G------DINIAFQAALLLGDVEECVDLLIETGRLP  432 (443)
T ss_dssp             T-------HHHHHHHHHHHT-HHHHHHHHHHTT-HH
T ss_pred             c------CHHHHHHHHHHcCCHHHHHHHHHHcCCch
Confidence            2      24555556666788888888887765433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.57  E-value=6.3  Score=34.75  Aligned_cols=131  Identities=13%  Similarity=0.121  Sum_probs=85.7

Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHH
Q 036290          613 SNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQ-ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYG  691 (796)
Q Consensus       613 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~  691 (796)
                      +.....|..-++ +++.+..++|+.-|..+.+.|...-. .............|+...|...|.++-..   .|.+....
T Consensus        56 s~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~r  131 (221)
T COG4649          56 SKSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGR  131 (221)
T ss_pred             ccchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhh
Confidence            344445554444 46677889999999999887755311 11222233456788999999999998744   44443332


Q ss_pred             HH-----HHHHHhcCChHHHHHHHHhCCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 036290          692 CL-----VDMLSRNGYLEDAKHVIEIMPFQ--P-SPTVYRSLLSGCRIHGNKELGEWASEKLLL  747 (796)
Q Consensus       692 ~l-----~~~~~~~g~~~~A~~~~~~~~~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  747 (796)
                      -+     ..++...|.+++....++-+...  | ....-..|.-+-.+.||+..|+..|+.+..
T Consensus       132 d~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         132 DLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            22     33466788999888888877322  2 223345666677899999999999998876

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=92.51  E-value=0.39  Score=47.91  Aligned_cols=261  Identities=14%  Similarity=0.087  Sum_probs=155.2

Q ss_pred             HHHHhcCCcchHHHHHhcCCCCCH-------hhHHHHHHHHHHcCChhHHHHHHHH-H---HHcCCCC-CHHHHHHHHHH
Q 036290          491 KSYVNFGQLDNSFEFSNGAERLDM-------ASWGAMMSALVHQGHNHEAVTIFHS-L---VEAGEKP-DEYILGTILNS  558 (796)
Q Consensus       491 ~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~A~~~~~~-m---~~~g~~p-~~~t~~~ll~~  558 (796)
                      .-+++.|+...-..+|+...+..+       ..|..+..+|.-.+++++|++.-.. +   +..|-+. ...+...|-+.
T Consensus        25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt  104 (639)
T KOG1130|consen   25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT  104 (639)
T ss_pred             HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence            347888888888888887776322       2355566666666777777765432 1   1111111 11222233333


Q ss_pred             HhccCchHHHHHH----HHHHHHhCCC-CchhHHHHHHHHHHhcCC--------------------HHHHHHHHhccCCC
Q 036290          559 CAAIGAYQRTKSI----HPFVIKLGFN-TEVYVASAVIDAYAKCGD--------------------IKGARMAFDQSFNS  613 (796)
Q Consensus       559 ~~~~~~~~~a~~~----~~~~~~~~~~-~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~~~~~  613 (796)
                      +--.|.+++|.-.    ++...+.|-. .....+-.+...|...|+                    ++.|.++|.+-++-
T Consensus       105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l  184 (639)
T KOG1130|consen  105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL  184 (639)
T ss_pred             hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence            4445566665543    2223333321 233445556666665443                    23344444322211


Q ss_pred             ----CC----hhHHHHHHHHHHhcCChHHHHHHHHHH----HHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhh
Q 036290          614 ----ND----VIVYNTLIMAYAHHGLVSEAMEIFDKM----KLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQ  680 (796)
Q Consensus       614 ----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~  680 (796)
                          .|    -..|..|...|--.|+++.|+..-+.=    ++.|-+. ....+..+..++.-.|+++.|.+.|+....-
T Consensus       185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L  264 (639)
T KOG1130|consen  185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL  264 (639)
T ss_pred             HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence                11    123455555555667888888665432    3333222 2345677778888889999999998875421


Q ss_pred             ---cCC-CCCchHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 036290          681 ---YGM-QPSPDCYGCLVDMLSRNGYLEDAKHVIEIM--------PFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLL  748 (796)
Q Consensus       681 ---~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  748 (796)
                         .|- ........+|...|.-..+++.|+.++.+-        ...-....+.+|..++...|..++|....+..+++
T Consensus       265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence               111 122344556888888888999999998775        12334578999999999999999999999999999


Q ss_pred             CCC
Q 036290          749 LPK  751 (796)
Q Consensus       749 ~p~  751 (796)
                      .-+
T Consensus       345 s~e  347 (639)
T KOG1130|consen  345 SLE  347 (639)
T ss_pred             HHH
Confidence            864

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=92.38  E-value=0.6  Score=48.16  Aligned_cols=64  Identities=13%  Similarity=0.017  Sum_probs=49.8

Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-CC-h---hHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 036290          582 TEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-ND-V---IVYNTLIMAYAHHGLVSEAMEIFDKMKLA  645 (796)
Q Consensus       582 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~  645 (796)
                      .+...++.+..+|.+.|++++|+..|++.+.. |+ .   .+|..+..+|...|+.++|++.+++..+.
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            35667788888888888888888888776664 43 2   35888888888888888888888888874

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=92.33  E-value=12  Score=37.24  Aligned_cols=141  Identities=20%  Similarity=0.169  Sum_probs=77.0

Q ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--cC----chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 036290          531 HEAVTIFHSLVEAGEKPDEYILGTILNSCAA--IG----AYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGAR  604 (796)
Q Consensus       531 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  604 (796)
                      ++.+.+++.|.+.|+.-+..+|-+.......  ..    ...++..+++.|++..+-                       
T Consensus        79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~f-----------------------  135 (297)
T PF13170_consen   79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPF-----------------------  135 (297)
T ss_pred             HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcc-----------------------
Confidence            4456666777777777776665543322222  22    234566666666664321                       


Q ss_pred             HHHhccCCCCChhHHHHHHHHHHhcCC----hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC---CHHHHHHHHHH
Q 036290          605 MAFDQSFNSNDVIVYNTLIMAYAHHGL----VSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKG---LVDKGCLLFKS  676 (796)
Q Consensus       605 ~~~~~~~~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g---~~~~A~~~~~~  676 (796)
                            +..++-..+..++..  ..++    .+.++.+|+.+.+.|+.. |..-+.+-+-++....   ...++..+++.
T Consensus       136 ------LTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~  207 (297)
T PF13170_consen  136 ------LTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNA  207 (297)
T ss_pred             ------ccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence                  111222333333222  1111    366778888888888887 3333333333333222   24578888888


Q ss_pred             hHhhcCCCCCchHHHHHHHHHHhcCCh
Q 036290          677 MDSQYGMQPSPDCYGCLVDMLSRNGYL  703 (796)
Q Consensus       677 ~~~~~~~~p~~~~~~~l~~~~~~~g~~  703 (796)
                      +.+. |+++....|..++-+-.-.+..
T Consensus       208 l~~~-~~kik~~~yp~lGlLall~~~~  233 (297)
T PF13170_consen  208 LKKN-GVKIKYMHYPTLGLLALLEDPE  233 (297)
T ss_pred             HHHc-CCccccccccHHHHHHhcCCch
Confidence            8866 8998887777665544444433

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=92.27  E-value=2.1  Score=37.43  Aligned_cols=53  Identities=15%  Similarity=0.202  Sum_probs=34.2

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccCCHHHHHHHHHHhHhh
Q 036290          626 YAHHGLVSEAMEIFDKMKLANLQPSQATFVSV-MSACSHKGLVDKGCLLFKSMDSQ  680 (796)
Q Consensus       626 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~g~~~~A~~~~~~~~~~  680 (796)
                      -.+.++.+.+..+++.+.-  +.|.......+ ..-+...|+|.+|+.+|+++..+
T Consensus        20 al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~   73 (160)
T PF09613_consen   20 ALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER   73 (160)
T ss_pred             HHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence            3456677777777777777  66655443332 23456677788888887777633

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=92.06  E-value=2.3  Score=42.06  Aligned_cols=122  Identities=16%  Similarity=0.107  Sum_probs=60.9

Q ss_pred             HHHHHhcCCHHHHHHHHhccCCC------C--ChhHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCHHHH----
Q 036290          591 IDAYAKCGDIKGARMAFDQSFNS------N--DVIVYNTLIMAYAHHGLVSEAMEIFDKMKL----ANLQPSQATF----  654 (796)
Q Consensus       591 i~~~~~~g~~~~A~~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~t~----  654 (796)
                      ..+..-.+.++.+++.|+..+.-      +  ....+..|...|.+..++++|..+..+..+    .++.--..-|    
T Consensus       129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~  208 (518)
T KOG1941|consen  129 GNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMS  208 (518)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHH
Confidence            33344444455555555433321      1  234556666666666666666655444432    1221111112    


Q ss_pred             -HHHHHHHhccCCHHHHHHHHHHhHhh---cCCCCC-chHHHHHHHHHHhcCChHHHHHHHHh
Q 036290          655 -VSVMSACSHKGLVDKGCLLFKSMDSQ---YGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEI  712 (796)
Q Consensus       655 -~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~  712 (796)
                       ..+.-++...|.+..|.+..++..+-   +|-+|. ..+...+.+.|...|+.+.|+.-++.
T Consensus       209 lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~  271 (518)
T KOG1941|consen  209 LYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ  271 (518)
T ss_pred             HHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence             22234556666666666666655432   233333 44555666777777777666665554

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=91.84  E-value=0.24  Score=30.97  Aligned_cols=28  Identities=25%  Similarity=0.098  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 036290          721 VYRSLLSGCRIHGNKELGEWASEKLLLL  748 (796)
Q Consensus       721 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~  748 (796)
                      +|..|...|.+.|++++|+.++++++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4677888888888888888888885543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=91.73  E-value=0.13  Score=35.47  Aligned_cols=37  Identities=27%  Similarity=0.221  Sum_probs=28.3

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEe
Q 036290          723 RSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLL  759 (796)
Q Consensus       723 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  759 (796)
                      ..+.-++.+.|+++.|++..+.+++.+|+|..+..+.
T Consensus         5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~   41 (53)
T PF14853_consen    5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK   41 (53)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            4466678899999999999999999999988765444

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=91.70  E-value=3.2  Score=41.10  Aligned_cols=199  Identities=15%  Similarity=0.067  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHhccCchHHHHHHHHHHHH--hCCC---CchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC-------Chh
Q 036290          550 YILGTILNSCAAIGAYQRTKSIHPFVIK--LGFN---TEVYVASAVIDAYAKCGDIKGARMAFDQSFNSN-------DVI  617 (796)
Q Consensus       550 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~  617 (796)
                      .+|..+..+.++.|.++.+...--.-++  ....   .-...|..+.+++.+..++.+++.+-+..+..|       .-.
T Consensus        44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq  123 (518)
T KOG1941|consen   44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ  123 (518)
T ss_pred             HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence            3445555556666666555433211111  0111   112344455566666666666666654333332       112


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHhccCCHHHHHHHHHHhH---hhcCCCCCchH
Q 036290          618 VYNTLIMAYAHHGLVSEAMEIFDKMKLANL---QP--SQATFVSVMSACSHKGLVDKGCLLFKSMD---SQYGMQPSPDC  689 (796)
Q Consensus       618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~t~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~p~~~~  689 (796)
                      ...++..++...+.++++++.|+...+---   +|  .-..+..|-..|....++++|.-+..+..   ..+++.--...
T Consensus       124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k  203 (518)
T KOG1941|consen  124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK  203 (518)
T ss_pred             hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence            334566777778889999999998765211   12  23457788888889999999887766543   22333222223


Q ss_pred             HH-----HHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 036290          690 YG-----CLVDMLSRNGYLEDAKHVIEIM-------PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLL  748 (796)
Q Consensus       690 ~~-----~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  748 (796)
                      |.     .|.-++...|+.-+|.+.-++.       |..| .......+.+.|...||.+.|..-||.+...
T Consensus       204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~  275 (518)
T KOG1941|consen  204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT  275 (518)
T ss_pred             HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence            33     3455677788888888777765       3222 2234567788899999999999999988753

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=91.64  E-value=7.6  Score=40.30  Aligned_cols=144  Identities=9%  Similarity=-0.045  Sum_probs=72.1

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC--chH
Q 036290          615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP---SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS--PDC  689 (796)
Q Consensus       615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~  689 (796)
                      ...+|..++..+.+.|+++.|...+.++...+..+   +......-+..+...|+-++|+..++..... .+..+  ...
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~  223 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS  223 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence            44567777777777788887777777776643221   2222333344555677777777777766642 11111  111


Q ss_pred             HHHHHHHHHhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290          690 YGCLVDMLSRNGYLEDAKHV-IEIMPFQPSPTVYRSLLSGCRIH------GNKELGEWASEKLLLLLPKNDAAHVLLSK  761 (796)
Q Consensus       690 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  761 (796)
                      ...+...+..  ..+..... ........-...+..+..-+...      ++.+++...++.+.+.+|....+|..++.
T Consensus       224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~  300 (352)
T PF02259_consen  224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL  300 (352)
T ss_pred             HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence            1111111000  00000000 00000000012233333333333      78888899999999999988887777666

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=91.45  E-value=1.6  Score=42.46  Aligned_cols=79  Identities=15%  Similarity=0.356  Sum_probs=56.6

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHh----hcCCCCCchHH
Q 036290          616 VIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDS----QYGMQPSPDCY  690 (796)
Q Consensus       616 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~~~~  690 (796)
                      ..++..++..+...|+++.+.+.++++..  ..| +...|..++.+|.+.|+...|+..|+.+.+    ..|+.|.+.+.
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~  230 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR  230 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence            34556677777777888888888888877  566 777788888888888888888877777654    34777776666


Q ss_pred             HHHHHH
Q 036290          691 GCLVDM  696 (796)
Q Consensus       691 ~~l~~~  696 (796)
                      ......
T Consensus       231 ~~y~~~  236 (280)
T COG3629         231 ALYEEI  236 (280)
T ss_pred             HHHHHH
Confidence            555444

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.39  E-value=12  Score=34.86  Aligned_cols=16  Identities=6%  Similarity=0.113  Sum_probs=8.4

Q ss_pred             ccCCHHHHHHHHHHhH
Q 036290          663 HKGLVDKGCLLFKSMD  678 (796)
Q Consensus       663 ~~g~~~~A~~~~~~~~  678 (796)
                      ..+++.+|+.+|+++.
T Consensus       166 ~leqY~~Ai~iyeqva  181 (288)
T KOG1586|consen  166 QLEQYSKAIDIYEQVA  181 (288)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3445555555555554

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.16  E-value=30  Score=38.84  Aligned_cols=118  Identities=15%  Similarity=0.102  Sum_probs=67.4

Q ss_pred             hHHHHHHHHccCChhHHHHHhcccCCCCcchHHHHHHH----HHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhc
Q 036290           82 QNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSA----AIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVS  157 (796)
Q Consensus        82 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~  157 (796)
                      ...-++.+.+..-++-|..+-..-..+ ...--.+.+.    +-+.|++++|...|-+-... +.|     ..+++-+..
T Consensus       337 le~kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLd  409 (933)
T KOG2114|consen  337 LETKLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLD  409 (933)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcC
Confidence            344556666666677776655533222 2222222222    34577888887777665422 222     234555555


Q ss_pred             cCChhHHHHHHHHHHHhcCCCChhHhhHHHHHHHccCChhHHHHHhhccC
Q 036290          158 MGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSIS  207 (796)
Q Consensus       158 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~  207 (796)
                      ......-..+++.+.+.|+... ..-+.|+..|.+.++.+.-.+..+...
T Consensus       410 aq~IknLt~YLe~L~~~gla~~-dhttlLLncYiKlkd~~kL~efI~~~~  458 (933)
T KOG2114|consen  410 AQRIKNLTSYLEALHKKGLANS-DHTTLLLNCYIKLKDVEKLTEFISKCD  458 (933)
T ss_pred             HHHHHHHHHHHHHHHHcccccc-hhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence            6666666677777777775433 333567777777777777766666554

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=91.14  E-value=10  Score=36.93  Aligned_cols=137  Identities=7%  Similarity=0.069  Sum_probs=72.4

Q ss_pred             ccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC-Ch---hHHHHHHHHHHhcCChHHHH
Q 036290          561 AIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSN-DV---IVYNTLIMAYAHHGLVSEAM  636 (796)
Q Consensus       561 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~---~~~~~li~~~~~~g~~~~A~  636 (796)
                      ..|+...+..+++........ +....-.++.+|...|+.+.|..++ ..++.. ..   .....-|..+.+.....+..
T Consensus       146 ~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL-~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~  223 (304)
T COG3118         146 EAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAIL-AALPLQAQDKAAHGLQAQIELLEQAAATPEIQ  223 (304)
T ss_pred             hccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHH-HhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence            444555555555554443333 2344455666777777777777777 444432 11   11222344445555544444


Q ss_pred             HHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCC
Q 036290          637 EIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGY  702 (796)
Q Consensus       637 ~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  702 (796)
                      .+-.+.-.   .| |...-..+...+...|+.+.|.+.+-.+.++..-.-|...-..|+..+.--|.
T Consensus       224 ~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~  287 (304)
T COG3118         224 DLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP  287 (304)
T ss_pred             HHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence            44444443   45 55555566666777777777776655555442223334555566666666663

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=91.11  E-value=25  Score=37.86  Aligned_cols=82  Identities=12%  Similarity=0.082  Sum_probs=42.2

Q ss_pred             ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH-hcCChHHHHHHHHhCCC------CChhhHHHHHHHHHhcCCchH
Q 036290          359 KLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFC-RCGAVEMAHSVFDNVSY------KNITTWNELLSGYCFNCCDAD  431 (796)
Q Consensus       359 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~-~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~  431 (796)
                      +.|..+.+.++|+.-... ++.+...|...+..++ ..|+.+...+.|+....      .....|...|.--..++++..
T Consensus        91 klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~  169 (577)
T KOG1258|consen   91 KLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKR  169 (577)
T ss_pred             HhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHH
Confidence            445555555555544432 3344444444443333 33455555555554432      234456666665566666667


Q ss_pred             HHHHHHHHHh
Q 036290          432 VLKTFCNIWE  441 (796)
Q Consensus       432 a~~~~~~m~~  441 (796)
                      ...++++.++
T Consensus       170 v~~iyeRile  179 (577)
T KOG1258|consen  170 VANIYERILE  179 (577)
T ss_pred             HHHHHHHHHh
Confidence            7777766665

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=90.85  E-value=8.8  Score=32.20  Aligned_cols=137  Identities=15%  Similarity=0.142  Sum_probs=71.6

Q ss_pred             HhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchh---HhHHHHHHHhcCCcc
Q 036290          424 CFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYI---CSSLIKSYVNFGQLD  500 (796)
Q Consensus       424 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~  500 (796)
                      .-.|..++..++..+...+   .+..-++.+|--....-+-+...+.++.+   |--.|...   ...++.+|...|...
T Consensus        13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis~C~NlKrVi~C~~~~n~~s   86 (161)
T PF09205_consen   13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDISKCGNLKRVIECYAKRNKLS   86 (161)
T ss_dssp             HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GGG-S-THHHHHHHHHTT---
T ss_pred             HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHH---hhhcCchhhcchHHHHHHHHHhcchH
Confidence            3457777777777776653   23344454554444333444444443333   22222221   123444444444332


Q ss_pred             hHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCC
Q 036290          501 NSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGF  580 (796)
Q Consensus       501 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  580 (796)
                                    ......+..+...|+-+.-.+++.++... -++++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus        87 --------------e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   87 --------------EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             --------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             --------------HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence                          23344566777778888777787777653 367777777888888888888888888887777765


Q ss_pred             C
Q 036290          581 N  581 (796)
Q Consensus       581 ~  581 (796)
                      +
T Consensus       152 k  152 (161)
T PF09205_consen  152 K  152 (161)
T ss_dssp             H
T ss_pred             H
Confidence            4

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=90.65  E-value=0.91  Score=29.94  Aligned_cols=30  Identities=27%  Similarity=0.395  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 036290          618 VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP  649 (796)
Q Consensus       618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  649 (796)
                      +|..+...|...|++++|.++|++..+  ..|
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P   32 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALA--LDP   32 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCc
Confidence            345556666666666666666666666  445

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.64  E-value=14  Score=36.52  Aligned_cols=144  Identities=11%  Similarity=0.011  Sum_probs=72.3

Q ss_pred             cCCHHHHHHHHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHhccCCHHHH
Q 036290          597 CGDIKGARMAFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFV----SVMSACSHKGLVDKG  670 (796)
Q Consensus       597 ~g~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~----~ll~~~~~~g~~~~A  670 (796)
                      .|+..+|...+++.+.. | |...++---.+|...|+.+.-...++++... ..||...|.    ++.-++...|-+++|
T Consensus       116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA  194 (491)
T KOG2610|consen  116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA  194 (491)
T ss_pred             cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence            34555555555444443 2 5555555556666666666666666665542 233433222    222333456666666


Q ss_pred             HHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC--CCCC----HHHHHHHHHHHHhcCChHHHHHHHH
Q 036290          671 CLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIMP--FQPS----PTVYRSLLSGCRIHGNKELGEWASE  743 (796)
Q Consensus       671 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~  743 (796)
                      ++.-++..   .++|. .-.-.++...+.-.|++.++.+++.+-.  .+..    ...|-...-.+...+.++.|+++|+
T Consensus       195 Ek~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD  271 (491)
T KOG2610|consen  195 EKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD  271 (491)
T ss_pred             HHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence            66665554   33333 3333445555666666666666665541  1100    1122233333444466666666666


Q ss_pred             H
Q 036290          744 K  744 (796)
Q Consensus       744 ~  744 (796)
                      +
T Consensus       272 ~  272 (491)
T KOG2610|consen  272 R  272 (491)
T ss_pred             H
Confidence            4

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=90.61  E-value=16  Score=34.84  Aligned_cols=62  Identities=13%  Similarity=0.085  Sum_probs=42.9

Q ss_pred             HHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 036290          692 CLVDMLSRNGYLEDAKHVIEIM-PFQPS----PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKND  753 (796)
Q Consensus       692 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  753 (796)
                      .+.+-|.+.|.+..|..-+++| .--|+    ...+-.+..+|...|-.++|....+-+-...|+++
T Consensus       172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~  238 (254)
T COG4105         172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ  238 (254)
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence            3556788889988888888887 21222    24556677788889999998887666555556554

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=90.60  E-value=16  Score=39.47  Aligned_cols=157  Identities=13%  Similarity=0.112  Sum_probs=94.8

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHhc----cCchHHHHHHHHHHHHhCCCCchhHHH
Q 036290          519 AMMSALVHQGHNHEAVTIFHSLVEAG-EKPDE-----YILGTILNSCAA----IGAYQRTKSIHPFVIKLGFNTEVYVAS  588 (796)
Q Consensus       519 ~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~  588 (796)
                      .++....-.|+-+.+++.+.+-.+.+ +.-..     -.|..++..++.    ..+.+.+.+++..+.+.=  |+...|.
T Consensus       193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~lfl  270 (468)
T PF10300_consen  193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSALFL  270 (468)
T ss_pred             HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHHHH
Confidence            34444455566666666666654322 11111     123333333332    346677888888777653  3444443


Q ss_pred             H-HHHHHHhcCCHHHHHHHHhccCCCC------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036290          589 A-VIDAYAKCGDIKGARMAFDQSFNSN------DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSAC  661 (796)
Q Consensus       589 ~-li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~  661 (796)
                      . -.+.+...|++++|++.|+..+...      ....+--+.-.+.-..+|++|.+.|.++.+.. .-+..+|..+..+|
T Consensus       271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c  349 (468)
T PF10300_consen  271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC  349 (468)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence            3 3566777899999999996555431      22334445556778899999999999998843 22455565555444


Q ss_pred             -hccCCH-------HHHHHHHHHhH
Q 036290          662 -SHKGLV-------DKGCLLFKSMD  678 (796)
Q Consensus       662 -~~~g~~-------~~A~~~~~~~~  678 (796)
                       ...|+.       ++|.++|.++.
T Consensus       350 ~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  350 LLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHhhccchhhhhhHHHHHHHHHHHH
Confidence             456777       88888888775

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.54  E-value=4.2  Score=43.19  Aligned_cols=106  Identities=10%  Similarity=0.050  Sum_probs=64.2

Q ss_pred             HHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCc
Q 036290          350 FSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCD  429 (796)
Q Consensus       350 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~  429 (796)
                      ...+++.+-+.|..+.|+++-.+-.            .-.+...+.|+++.|.++.++..  +...|..|.....+.|+.
T Consensus       298 ~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~  363 (443)
T PF04053_consen  298 GQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNI  363 (443)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBH
T ss_pred             HHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCH
Confidence            5556666666666666666532211            12445566788888877766554  556788888888888888


Q ss_pred             hHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhC
Q 036290          430 ADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTG  478 (796)
Q Consensus       430 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~  478 (796)
                      +-|.+.|.+..+         |..++--+.-.|+.+...++.+.....|
T Consensus       364 ~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~  403 (443)
T PF04053_consen  364 ELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG  403 (443)
T ss_dssp             HHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence            888888776543         3444445555666666666666655555

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=90.51  E-value=16  Score=34.65  Aligned_cols=184  Identities=18%  Similarity=0.118  Sum_probs=132.5

Q ss_pred             chHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhccCC----CCChhHHHHHHHHHHhcCChHHHHHH
Q 036290          564 AYQRTKSIHPFVIKLGFN-TEVYVASAVIDAYAKCGDIKGARMAFDQSFN----SNDVIVYNTLIMAYAHHGLVSEAMEI  638 (796)
Q Consensus       564 ~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~  638 (796)
                      ....+...+......... ............+...+++..+...+.....    ......+......+...+++..+.+.
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (291)
T COG0457          38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL  117 (291)
T ss_pred             hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence            333444444444433322 1356677778888899999999888855543    24566777778888888999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHH-HHhccCCHHHHHHHHHHhHhhcCCCC----CchHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          639 FDKMKLANLQPSQATFVSVMS-ACSHKGLVDKGCLLFKSMDSQYGMQP----SPDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       639 ~~~m~~~g~~p~~~t~~~ll~-~~~~~g~~~~A~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      +.........+ ......... .+...|+++.|...+++...   ..|    ....+......+...++.++|...+.+.
T Consensus       118 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  193 (291)
T COG0457         118 LEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKA  193 (291)
T ss_pred             HHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence            99998843333 122223333 78899999999999999852   333    2444445555577889999999999888


Q ss_pred             -CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 036290          714 -PFQPS--PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPK  751 (796)
Q Consensus       714 -~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  751 (796)
                       ...++  ...+..+...+...++.+.|...+..+.+..|.
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD  234 (291)
T ss_pred             HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence             44444  577888888899999999999999999999997

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.47  E-value=34  Score=38.39  Aligned_cols=118  Identities=9%  Similarity=0.033  Sum_probs=71.3

Q ss_pred             HHHHHhhhcCCCHHHHHHHHhhcCCCCcc---hHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccC
Q 036290          285 NALIDMYIKSSGMDYAFKVFERMADKDVI---SWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLL  361 (796)
Q Consensus       285 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~  361 (796)
                      ..-++.+++...++.|..+-+.-..+...   ....-.+.+.+.|++++|...|-+-... +.|     ..+|.-+....
T Consensus       338 e~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq  411 (933)
T KOG2114|consen  338 ETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQ  411 (933)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHH
Confidence            34456666666777777776654332111   1222233456778888888877664321 222     23455555555


Q ss_pred             ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036290          362 DLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVS  409 (796)
Q Consensus       362 ~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~  409 (796)
                      ....-..+++.+.+.|+. +...-+.|+.+|.+.++.+.-.++.+...
T Consensus       412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~  458 (933)
T KOG2114|consen  412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD  458 (933)
T ss_pred             HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence            566666677777777753 44555678888888888888777776655

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=90.23  E-value=0.66  Score=45.17  Aligned_cols=53  Identities=11%  Similarity=0.093  Sum_probs=28.2

Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 036290          624 MAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMD  678 (796)
Q Consensus       624 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~  678 (796)
                      .-|.+.|.+++|+..|.+-..  +.| |.+++..-..+|.+..++..|..-...+.
T Consensus       105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai  158 (536)
T KOG4648|consen  105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI  158 (536)
T ss_pred             hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence            345555556666665555554  445 55555555555555555555554444433

>PRK09687 putative lyase; Provisional

Probab=90.03  E-value=21  Score=35.35  Aligned_cols=234  Identities=11%  Similarity=-0.020  Sum_probs=113.8

Q ss_pred             CchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCCh----hHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036290          482 CGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHN----HEAVTIFHSLVEAGEKPDEYILGTILN  557 (796)
Q Consensus       482 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~  557 (796)
                      +..+....+..+...|..+....+..-...+|...-...+.++.+.|+.    +++...+..+...  .|+...-...+.
T Consensus        36 d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~  113 (280)
T PRK09687         36 NSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAIN  113 (280)
T ss_pred             CHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHH
Confidence            3344444444444444333222222222334444444555556665543    3456666655333  455554444555


Q ss_pred             HHhccCchHH--HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcC-ChHH
Q 036290          558 SCAAIGAYQR--TKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHG-LVSE  634 (796)
Q Consensus       558 ~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~  634 (796)
                      ++...+....  -.+....+...-..++..+-...+.++++.++. ++...+...+..++...-...+.++.+.+ +...
T Consensus       114 aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~  192 (280)
T PRK09687        114 ATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDE-AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPD  192 (280)
T ss_pred             HHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH-HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHH
Confidence            4444332110  112222222222223445555666666666653 44444446666666665555556655543 2345


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-
Q 036290          635 AMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-  713 (796)
Q Consensus       635 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-  713 (796)
                      +...+..+..   .++...-...+.++.+.|+. .|...+-...+.    ++  .....+.++...|.. +|...+..+ 
T Consensus       193 ~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~  261 (280)
T PRK09687        193 IREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTLL  261 (280)
T ss_pred             HHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHH
Confidence            5555555552   45666666667777777663 444444444422    12  233456666666664 455555555 


Q ss_pred             CCCCCHHHHHHHHHHH
Q 036290          714 PFQPSPTVYRSLLSGC  729 (796)
Q Consensus       714 ~~~p~~~~~~~l~~~~  729 (796)
                      .-.||..+-...+.+|
T Consensus       262 ~~~~d~~v~~~a~~a~  277 (280)
T PRK09687        262 YKFDDNEIITKAIDKL  277 (280)
T ss_pred             hhCCChhHHHHHHHHH
Confidence            3345555544444443

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.01  E-value=36  Score=37.90  Aligned_cols=76  Identities=12%  Similarity=0.042  Sum_probs=47.3

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcc
Q 036290          382 ENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCR  460 (796)
Q Consensus       382 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~  460 (796)
                      ..+....|+.+.-.|++++|-...-.|...+..-|.-.+..+...++......++   .....+.+...|..+|..+..
T Consensus       392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~  467 (846)
T KOG2066|consen  392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA  467 (846)
T ss_pred             HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence            3455677788888888888888888888777777777777777666654433322   111112344555555555544

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=89.89  E-value=0.066  Score=47.08  Aligned_cols=85  Identities=15%  Similarity=0.053  Sum_probs=58.8

Q ss_pred             HHHHHHhccCChhHHHHHHHHHHHhcCCCChhHhhHHHHHHHccCChhHHHHHhhccCCCCceeHHHHHHHHHhCCCchH
Q 036290          150 SVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFE  229 (796)
Q Consensus       150 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  229 (796)
                      .++..+-+.+.......+++.+...+...+....+.++..|++.++.+...++++....   .-...++..|.+.|.+++
T Consensus        12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~   88 (143)
T PF00637_consen   12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE   88 (143)
T ss_dssp             CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence            34566666777777777788887777677788888999999998888888888773332   333456666667777777


Q ss_pred             HHHHHHHH
Q 036290          230 ALNVVSSM  237 (796)
Q Consensus       230 A~~~~~~m  237 (796)
                      |.-++.++
T Consensus        89 a~~Ly~~~   96 (143)
T PF00637_consen   89 AVYLYSKL   96 (143)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHHHc
Confidence            77666655

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.83  E-value=8.6  Score=37.79  Aligned_cols=151  Identities=15%  Similarity=0.116  Sum_probs=100.7

Q ss_pred             HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHh---CCCCchhHHHHHHHHHHhcCCHHH
Q 036290          526 HQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKL---GFNTEVYVASAVIDAYAKCGDIKG  602 (796)
Q Consensus       526 ~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~  602 (796)
                      -.|+..+|-..++++.+. .+.|...+...=.+|...|+.+.-...++.+...   +++....+-..+.-++..+|-+++
T Consensus       115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d  193 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD  193 (491)
T ss_pred             ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence            478888898899998775 4777778888888899999988888887777653   233233333444555677899999


Q ss_pred             HHHHHhccCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-C---CHHHHHHHHHHHhccCCHHHHHHHHHH
Q 036290          603 ARMAFDQSFNSN--DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQ-P---SQATFVSVMSACSHKGLVDKGCLLFKS  676 (796)
Q Consensus       603 A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p---~~~t~~~ll~~~~~~g~~~~A~~~~~~  676 (796)
                      |++.-++.+.-+  |.-.-.+....+.-.|++.++.+...+-.+. .+ .   -...|-...-.+...+.++.|+++|+.
T Consensus       194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~  272 (491)
T KOG2610|consen  194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR  272 (491)
T ss_pred             HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence            998887777664  4444455666677788888888776554331 11 0   111233333344556788899998875


Q ss_pred             hH
Q 036290          677 MD  678 (796)
Q Consensus       677 ~~  678 (796)
                      -.
T Consensus       273 ei  274 (491)
T KOG2610|consen  273 EI  274 (491)
T ss_pred             HH
Confidence            44

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=89.75  E-value=14  Score=32.91  Aligned_cols=40  Identities=13%  Similarity=0.120  Sum_probs=28.7

Q ss_pred             HHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHh
Q 036290          368 QLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDN  407 (796)
Q Consensus       368 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~  407 (796)
                      ++++.+.+.+++|+...+..+++.+.+.|++.....++.-
T Consensus        15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~   54 (167)
T PF07035_consen   15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY   54 (167)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh
Confidence            4555566677888888888888888888877766665543

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=89.55  E-value=30  Score=38.91  Aligned_cols=49  Identities=16%  Similarity=0.135  Sum_probs=28.6

Q ss_pred             CcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 036290          346 NHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRC  395 (796)
Q Consensus       346 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~  395 (796)
                      +....-.+|--|.++|+.++|.++..... ..+......+...+..|...
T Consensus       110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~-~~~~~~~~~f~~~l~~~~~s  158 (613)
T PF04097_consen  110 NGDPIWALIYYCLRCGDYDEALEVANENR-NQFQKIERSFPTYLKAYASS  158 (613)
T ss_dssp             TTEEHHHHHHHHHTTT-HHHHHHHHHHTG-GGS-TTTTHHHHHHHHCTTT
T ss_pred             CCCccHHHHHHHHhcCCHHHHHHHHHHhh-hhhcchhHHHHHHHHHHHhC
Confidence            44455567777888888888888773333 22344444555666666554

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=89.09  E-value=0.67  Score=28.00  Aligned_cols=31  Identities=13%  Similarity=0.038  Sum_probs=26.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 036290          722 YRSLLSGCRIHGNKELGEWASEKLLLLLPKN  752 (796)
Q Consensus       722 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  752 (796)
                      +..+..++.+.|+.++|.+.++++++..|++
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            4557777888999999999999999998874

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=87.80  E-value=20  Score=32.05  Aligned_cols=57  Identities=9%  Similarity=0.147  Sum_probs=36.8

Q ss_pred             HHHHHhhhcCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHc
Q 036290          285 NALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILS  341 (796)
Q Consensus       285 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~  341 (796)
                      ..++..+...|++-+|.++.+....-+......++.+..+.++...-..+|+-..+.
T Consensus        93 ~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~  149 (167)
T PF07035_consen   93 EEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEER  149 (167)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            455566677777778887777765555555566777777777766655555555443

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=87.62  E-value=7.1  Score=30.78  Aligned_cols=89  Identities=10%  Similarity=0.057  Sum_probs=61.1

Q ss_pred             CChhhHHHHHHHHHHhCCCCCchhhHHHHHHHHccCChhHHHHHhcccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 036290           58 KSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLKMYVDMK  137 (796)
Q Consensus        58 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~  137 (796)
                      ...++|..|-+-+...+-. ...+--+-++++...|++++|..+.+.+.-||+..|-++-..  +.|..+.+..-+.+|.
T Consensus        19 HcHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla   95 (115)
T TIGR02508        19 HCHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLA   95 (115)
T ss_pred             hHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHH
Confidence            3455666555554433311 233333445677899999999999999999999999887664  7788888888888888


Q ss_pred             HCCCCCCcccHHH
Q 036290          138 TNGFMPNEFAVGS  150 (796)
Q Consensus       138 ~~~~~p~~~t~~~  150 (796)
                      .+| .|...+|..
T Consensus        96 ~sg-~p~lq~Faa  107 (115)
T TIGR02508        96 ASG-DPRLQTFVA  107 (115)
T ss_pred             hCC-CHHHHHHHH
Confidence            776 444444443

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=87.58  E-value=0.74  Score=41.30  Aligned_cols=84  Identities=12%  Similarity=0.060  Sum_probs=39.1

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHH------HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHH
Q 036290          625 AYAHHGLVSEAMEIFDKMKLANLQPSQAT------FVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDML  697 (796)
Q Consensus       625 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t------~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~  697 (796)
                      -+.+.|++++|..-|.+.++.  -|...+      |..-.-++.+.+.++.|+.-.....   .+.|+ ...+..-..+|
T Consensus       104 ~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai---el~pty~kAl~RRAeay  178 (271)
T KOG4234|consen  104 ELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI---ELNPTYEKALERRAEAY  178 (271)
T ss_pred             HhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH---hcCchhHHHHHHHHHHH
Confidence            355566666666666666653  232211      2222234445555555555554444   34443 22222233344


Q ss_pred             HhcCChHHHHHHHHhC
Q 036290          698 SRNGYLEDAKHVIEIM  713 (796)
Q Consensus       698 ~~~g~~~~A~~~~~~~  713 (796)
                      .+..++++|++-+.+.
T Consensus       179 ek~ek~eealeDyKki  194 (271)
T KOG4234|consen  179 EKMEKYEEALEDYKKI  194 (271)
T ss_pred             HhhhhHHHHHHHHHHH
Confidence            4455555555555444

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.40  E-value=26  Score=33.06  Aligned_cols=56  Identities=11%  Similarity=0.125  Sum_probs=27.0

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC--CchHHHHHHHHHHhcCChHHHHHHH
Q 036290          654 FVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP--SPDCYGCLVDMLSRNGYLEDAKHVI  710 (796)
Q Consensus       654 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~  710 (796)
                      |...|-.+....++..|...++.-.+-.++.-  +..+...|+.+|- .|+.+++..++
T Consensus       193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl  250 (308)
T KOG1585|consen  193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL  250 (308)
T ss_pred             HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence            44444455555566666666655332212111  1444555555543 45555555544

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=87.19  E-value=11  Score=32.52  Aligned_cols=26  Identities=8%  Similarity=-0.086  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHH
Q 036290          721 VYRSLLSGCRIHGNKELGEWASEKLL  746 (796)
Q Consensus       721 ~~~~l~~~~~~~g~~~~A~~~~~~~~  746 (796)
                      .|..........|+..++..+.+.+.
T Consensus        95 ~Wr~~A~~~le~~~~~~a~~Lv~al~  120 (153)
T TIGR02561        95 EWHVHADEVLARDADADAVALVRALL  120 (153)
T ss_pred             HHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence            45555555556666666776666665

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=86.96  E-value=17  Score=30.54  Aligned_cols=64  Identities=14%  Similarity=0.198  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCC
Q 036290          618 VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGM  683 (796)
Q Consensus       618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~  683 (796)
                      .....+..+...|+-+.-.+++.++.+. -+|+......+..||.+.|+..++.+++.++.++ |+
T Consensus        88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~  151 (161)
T PF09205_consen   88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL  151 (161)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence            3445566677777777777777777652 3566667777778888888888888888777755 54

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=86.93  E-value=32  Score=33.61  Aligned_cols=136  Identities=15%  Similarity=0.087  Sum_probs=74.0

Q ss_pred             HHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 036290          594 YAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGC  671 (796)
Q Consensus       594 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~  671 (796)
                      ....|++.+|...|+..+..  .+...--.++.+|...|+.+.|..++..+...--.........-|..+.+.....+..
T Consensus       144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~  223 (304)
T COG3118         144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ  223 (304)
T ss_pred             hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence            44567777777777554443  2445556677777777777777777777654221122222122233333333333333


Q ss_pred             HHHHHhHhhcCCCC-CchHHHHHHHHHHhcCChHHHHHHHHhC-C---CCCCHHHHHHHHHHHHhcC
Q 036290          672 LLFKSMDSQYGMQP-SPDCYGCLVDMLSRNGYLEDAKHVIEIM-P---FQPSPTVYRSLLSGCRIHG  733 (796)
Q Consensus       672 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~~~~~~~l~~~~~~~g  733 (796)
                      .+-++.-    -.| |...-..+...+...|+.++|.+.+-.+ .   -.-|...-..|+..+...|
T Consensus       224 ~l~~~~a----adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         224 DLQRRLA----ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            3333332    345 3556666777777777777777666544 1   1223445556666665555

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=86.73  E-value=2  Score=39.26  Aligned_cols=84  Identities=18%  Similarity=0.121  Sum_probs=50.9

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCC
Q 036290          625 AYAHHGLVSEAMEIFDKMKLANLQPSQ-ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGY  702 (796)
Q Consensus       625 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~  702 (796)
                      .|-..|-+.-|.--|.+...  +.|+. ..||.|---+...|+++.|.+.|+...   .+.|. ..+...-.-.+.=-|+
T Consensus        74 lYDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~---ELDp~y~Ya~lNRgi~~YY~gR  148 (297)
T COG4785          74 LYDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL---ELDPTYNYAHLNRGIALYYGGR  148 (297)
T ss_pred             hhhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHh---ccCCcchHHHhccceeeeecCc
Confidence            35566666666666666666  66744 456666666677788888888887776   55565 2222211222333577


Q ss_pred             hHHHHHHHHhC
Q 036290          703 LEDAKHVIEIM  713 (796)
Q Consensus       703 ~~~A~~~~~~~  713 (796)
                      ++-|.+-+...
T Consensus       149 ~~LAq~d~~~f  159 (297)
T COG4785         149 YKLAQDDLLAF  159 (297)
T ss_pred             hHhhHHHHHHH
Confidence            77777666554

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=86.28  E-value=7.3  Score=35.47  Aligned_cols=95  Identities=13%  Similarity=0.096  Sum_probs=65.8

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCc------h
Q 036290          617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQ--ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSP------D  688 (796)
Q Consensus       617 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~------~  688 (796)
                      ..+..+...|++.|+.+.|.+.|.++.+....|..  ..+..+|+.+...|++..+.....++........|.      .
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            35667888889999999999999998886655533  346777888888889988888888776442221111      1


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          689 CYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       689 ~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      +|..|  .+...|++.+|.+.|-..
T Consensus       117 ~~~gL--~~l~~r~f~~AA~~fl~~  139 (177)
T PF10602_consen  117 VYEGL--ANLAQRDFKEAAELFLDS  139 (177)
T ss_pred             HHHHH--HHHHhchHHHHHHHHHcc
Confidence            22222  234578999998888776

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=86.20  E-value=1.3  Score=27.67  Aligned_cols=25  Identities=20%  Similarity=0.159  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          689 CYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       689 ~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      +|..|..+|.+.|++++|++++++.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~a   25 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQA   25 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4677888899999999999888873

>smart00028 TPR Tetratricopeptide repeats

Probab=86.18  E-value=1.4  Score=25.92  Aligned_cols=31  Identities=23%  Similarity=0.052  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 036290          721 VYRSLLSGCRIHGNKELGEWASEKLLLLLPK  751 (796)
Q Consensus       721 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  751 (796)
                      .|..+...+...|+++.|...++.+++.+|+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            5677788888889999999999999988875

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=85.98  E-value=0.59  Score=28.73  Aligned_cols=20  Identities=25%  Similarity=0.508  Sum_probs=10.0

Q ss_pred             chHHHHHHHHHHhcCChHHH
Q 036290          687 PDCYGCLVDMLSRNGYLEDA  706 (796)
Q Consensus       687 ~~~~~~l~~~~~~~g~~~~A  706 (796)
                      +..|..+...|...|++++|
T Consensus        13 ~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen   13 AEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             HHHHHHHHHHHHHCcCHHhh
Confidence            44455555555555555544

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.78  E-value=11  Score=33.25  Aligned_cols=87  Identities=15%  Similarity=0.141  Sum_probs=48.6

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHH--HHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCC
Q 036290          626 YAHHGLVSEAMEIFDKMKLANLQPSQA-TFVSV--MSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGY  702 (796)
Q Consensus       626 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l--l~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  702 (796)
                      ....|+...|...|+++-.-.-.|-.. -...|  ...+...|.++....-.+-+... +-.-....-..|.-+-.+.|+
T Consensus       104 ~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d-~n~mR~sArEALglAa~kagd  182 (221)
T COG4649         104 LAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGD  182 (221)
T ss_pred             HhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccc
Confidence            455667777777777766533333221 11111  12345667777766666655422 222224444566666677777


Q ss_pred             hHHHHHHHHhC
Q 036290          703 LEDAKHVIEIM  713 (796)
Q Consensus       703 ~~~A~~~~~~~  713 (796)
                      +.+|.++|...
T Consensus       183 ~a~A~~~F~qi  193 (221)
T COG4649         183 FAKAKSWFVQI  193 (221)
T ss_pred             hHHHHHHHHHH
Confidence            77777777766

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=85.44  E-value=35  Score=32.65  Aligned_cols=176  Identities=14%  Similarity=0.149  Sum_probs=93.5

Q ss_pred             HHHHcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 036290          523 ALVHQGHNHEAVTIFHSLVEAG--EKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDI  600 (796)
Q Consensus       523 ~~~~~~~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  600 (796)
                      .-.+.|++++|.+.|+.+..+-  -+-...+...++.++-+.++++.|....++..+.-......-|...+.+++.    
T Consensus        43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~----  118 (254)
T COG4105          43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSY----  118 (254)
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH----
Confidence            3456788888888888886542  1223455556667777888888888888887775444444445445555441    


Q ss_pred             HHHHHHHhccCCC--CChh-------HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCCHHHH
Q 036290          601 KGARMAFDQSFNS--NDVI-------VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATF-VSVMSACSHKGLVDKG  670 (796)
Q Consensus       601 ~~A~~~~~~~~~~--~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~g~~~~A  670 (796)
                            | ..+..  .|..       .+..++.-|=...-...|..-...+...     ..-+ ..+.+-|.+.|.+..|
T Consensus       119 ------~-~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~-----LA~~Em~IaryY~kr~~~~AA  186 (254)
T COG4105         119 ------F-FQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDA-----LAGHEMAIARYYLKRGAYVAA  186 (254)
T ss_pred             ------h-ccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH-----HHHHHHHHHHHHHHhcChHHH
Confidence                  1 11111  1111       1111111111111111111111111110     0001 1234567778888888


Q ss_pred             HHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036290          671 CLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIMP  714 (796)
Q Consensus       671 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~  714 (796)
                      ..-++.|.+.+.-.+- ...+-.+..+|.+.|-.++|...-.-++
T Consensus       187 ~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~  231 (254)
T COG4105         187 INRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG  231 (254)
T ss_pred             HHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            8888888855433332 4556667778888888877776666553

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=85.16  E-value=42  Score=33.32  Aligned_cols=67  Identities=9%  Similarity=-0.022  Sum_probs=29.6

Q ss_pred             chhHhHHHHHHHhcCCcchHHHHHhcCCCC---CHhhHHHHHHHHH--HcCChhHHHHHHHHHHHcCCCCCH
Q 036290          483 GYICSSLIKSYVNFGQLDNSFEFSNGAERL---DMASWGAMMSALV--HQGHNHEAVTIFHSLVEAGEKPDE  549 (796)
Q Consensus       483 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~--~~~~~~~A~~~~~~m~~~g~~p~~  549 (796)
                      +.++-.-++.+.+.++.+.+.+.+.+|...   ....+...+..+-  .......|...++.+....+.|..
T Consensus       121 ~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~  192 (278)
T PF08631_consen  121 PEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE  192 (278)
T ss_pred             cHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence            344444444444455555555555554431   1223333333331  123334555666555444444444

It is also involved in sporulation [].

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=85.10  E-value=2.1  Score=26.09  Aligned_cols=27  Identities=30%  Similarity=0.347  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036290          618 VYNTLIMAYAHHGLVSEAMEIFDKMKL  644 (796)
Q Consensus       618 ~~~~li~~~~~~g~~~~A~~~~~~m~~  644 (796)
                      .|..+...|...|++++|+..|++..+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            455566666666666666666666665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK11619 lytic murein transglycosylase; Provisional

Probab=85.02  E-value=74  Score=35.99  Aligned_cols=125  Identities=12%  Similarity=-0.033  Sum_probs=77.2

Q ss_pred             cCChHHHHHHHHHHHHCC-CCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHH
Q 036290          629 HGLVSEAMEIFDKMKLAN-LQPSQ--ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLED  705 (796)
Q Consensus       629 ~g~~~~A~~~~~~m~~~g-~~p~~--~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  705 (796)
                      ..+.+.|..++....... +.+..  ..+..+.......+..++|...++....   ...+......-+..-.+.++++.
T Consensus       254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~e~r~r~Al~~~dw~~  330 (644)
T PRK11619        254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLLERRVRMALGTGDRRG  330 (644)
T ss_pred             HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHHHHHHHHHHHccCHHH
Confidence            456788999998875432 33222  2234444333444335566666665541   22344455555666668999999


Q ss_pred             HHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEec
Q 036290          706 AKHVIEIMP--FQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLS  760 (796)
Q Consensus       706 A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~  760 (796)
                      +...+..|+  ..-...-..-+..++...|+.++|...++++-.  +  ...|-.|+
T Consensus       331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~--~~fYG~LA  383 (644)
T PRK11619        331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--Q--RGFYPMVA  383 (644)
T ss_pred             HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CCcHHHHH
Confidence            999999983  222334445667777778999999999999743  2  34555663

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=84.31  E-value=16  Score=36.48  Aligned_cols=60  Identities=12%  Similarity=0.009  Sum_probs=31.2

Q ss_pred             cHHHHHHHHHHHcCCCCCcc--hHHHHHHHhcccCC--hHHHHHHHHHHHHhCCCCchhHHHHH
Q 036290          329 GQTASLFHKFILSGSRPNHV--TFSILLRQCGKLLD--LDLGLQLQCLALHCGFLDEENVTSSL  388 (796)
Q Consensus       329 ~~a~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~l  388 (796)
                      +.+..+|+.+...|+..+..  ..+.+|..+.....  ...+.++++.+.+.|+++....|..+
T Consensus       160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l  223 (297)
T PF13170_consen  160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL  223 (297)
T ss_pred             HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence            34455666666666555433  33333333322222  23556666667777776666665544

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.29  E-value=4.7  Score=39.13  Aligned_cols=102  Identities=10%  Similarity=0.045  Sum_probs=74.0

Q ss_pred             hCCCCCchhhHHHHHHHHccCChhHHHHHhcccCC-CCc-----chHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcc
Q 036290           73 LGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAE-RNL-----VSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEF  146 (796)
Q Consensus        73 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~  146 (796)
                      .|...+..+-..++..-.....++.+...+=++.+ |+.     .+-.+.++-+ -.=+++.++.++..=++.|+-||.+
T Consensus        58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf  136 (418)
T KOG4570|consen   58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF  136 (418)
T ss_pred             cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence            46666666777777776777888888887766643 211     1111223332 2336778999999889999999999


Q ss_pred             cHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 036290          147 AVGSVMKVCVSMGASEFGYSIHCFALKIR  175 (796)
Q Consensus       147 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g  175 (796)
                      |++.++..+.+.++...|.++.-+|....
T Consensus       137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  137 TFCLLMDSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            99999999999999999888888877654

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=83.72  E-value=1.1  Score=27.51  Aligned_cols=31  Identities=13%  Similarity=0.284  Sum_probs=21.1

Q ss_pred             HHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHH
Q 036290          639 FDKMKLANLQP-SQATFVSVMSACSHKGLVDKGC  671 (796)
Q Consensus       639 ~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~  671 (796)
                      |++.++  +.| |...|..+...+...|++++|+
T Consensus         2 y~kAie--~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIE--LNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHH--HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            344455  456 6667777777778888877775

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=83.63  E-value=59  Score=33.76  Aligned_cols=70  Identities=10%  Similarity=0.186  Sum_probs=57.9

Q ss_pred             CCCCchhhHHHHHHHHccCChhHHHHHhcccCCCCcc---hHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC
Q 036290           75 FTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLV---SWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPN  144 (796)
Q Consensus        75 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~  144 (796)
                      -+-|+.+|-.||.-|...|..++.++.+++|..|-..   +|..-+++-....+++....+|.+........|
T Consensus        38 NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ld  110 (660)
T COG5107          38 NPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLD  110 (660)
T ss_pred             CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHh
Confidence            3567889999999999999999999999999887543   688888887778888888899988877655433

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=83.33  E-value=66  Score=34.07  Aligned_cols=165  Identities=7%  Similarity=0.010  Sum_probs=85.9

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhccCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 036290          584 VYVASAVIDAYAKCGDIKGARMAFDQSFNS-NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACS  662 (796)
Q Consensus       584 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~  662 (796)
                      .....+++..++..-+..-...+..+++.- .+-..|-.++..|... ..+.-..+|+++.+  ..-|......-+-.+.
T Consensus        66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve--~dfnDvv~~ReLa~~y  142 (711)
T COG1747          66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE--YDFNDVVIGRELADKY  142 (711)
T ss_pred             chHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH--hcchhHHHHHHHHHHH
Confidence            333444445554444444444444333322 3445566666666666 44566667777766  3333333333333333


Q ss_pred             ccCCHHHHHHHHHHhHhhcCCCCC------chHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhc
Q 036290          663 HKGLVDKGCLLFKSMDSQYGMQPS------PDCYGCLVDMLSRNGYLEDAKHVIEIM----PFQPSPTVYRSLLSGCRIH  732 (796)
Q Consensus       663 ~~g~~~~A~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~  732 (796)
                      ..++.+.+..+|.++..+  +-|.      ...|.-|....  ..+.+....+..+.    +...-...+..+-.-|...
T Consensus       143 Ekik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~  218 (711)
T COG1747         143 EKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN  218 (711)
T ss_pred             HHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence            346666777777666533  2331      12233222211  23444444444444    2223334455555666777


Q ss_pred             CChHHHHHHHHHHHccCCCCCcc
Q 036290          733 GNKELGEWASEKLLLLLPKNDAA  755 (796)
Q Consensus       733 g~~~~A~~~~~~~~~~~p~~~~~  755 (796)
                      .|+.+|++++..+++.+..|.-+
T Consensus       219 eN~~eai~Ilk~il~~d~k~~~a  241 (711)
T COG1747         219 ENWTEAIRILKHILEHDEKDVWA  241 (711)
T ss_pred             cCHHHHHHHHHHHhhhcchhhhH
Confidence            78888888888888877777665

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=82.74  E-value=15  Score=33.93  Aligned_cols=124  Identities=14%  Similarity=0.103  Sum_probs=70.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----chHHHHH
Q 036290          619 YNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS----PDCYGCL  693 (796)
Q Consensus       619 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l  693 (796)
                      .+.-+..+.+.+...+++...++-.+  -+| |..+-..+++.++-.|+|++|..-++..-   .+.|+    ...|..+
T Consensus         4 l~~t~seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~l   78 (273)
T COG4455           4 LRDTISELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRHL   78 (273)
T ss_pred             hHHHHHHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHHH
Confidence            34445666777788888887776666  356 55666677788888888888888777665   34444    4556555


Q ss_pred             HHHHHhcCChHHHHHHHHhC---CCCC-CHHHHHH-HHHH--HHhcCChHHHHHHHHHHHccCCCCC
Q 036290          694 VDMLSRNGYLEDAKHVIEIM---PFQP-SPTVYRS-LLSG--CRIHGNKELGEWASEKLLLLLPKND  753 (796)
Q Consensus       694 ~~~~~~~g~~~~A~~~~~~~---~~~p-~~~~~~~-l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~  753 (796)
                      +++-.-..      ++|..-   ++-- ....|-. +..+  +...|.-+.+..+-+.+++..|..+
T Consensus        79 ir~ea~R~------evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i  139 (273)
T COG4455          79 IRCEAARN------EVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI  139 (273)
T ss_pred             HHHHHHHH------HHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence            55432111      233222   1111 2233433 3333  2233455556677777777666533

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=82.57  E-value=11  Score=38.87  Aligned_cols=130  Identities=17%  Similarity=0.204  Sum_probs=89.6

Q ss_pred             hcCChHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHH
Q 036290          628 HHGLVSEAM-EIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDA  706 (796)
Q Consensus       628 ~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A  706 (796)
                      ..|+.-.|- +++..++...-.|+.....+.|  +...|+++.+.+.+......  +.....+..++++...+.|++++|
T Consensus       301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a  376 (831)
T PRK15180        301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREA  376 (831)
T ss_pred             hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHH
Confidence            456655554 4555555544456655544444  56789999999999888632  334467888899999999999999


Q ss_pred             HHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceE-EecC
Q 036290          707 KHVIEIM-P-FQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHV-LLSK  761 (796)
Q Consensus       707 ~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~-~l~~  761 (796)
                      ..+-+.| + .-.++.+...........|-++++...+++.+.++|.....++ .|+.
T Consensus       377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~  434 (831)
T PRK15180        377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSS  434 (831)
T ss_pred             HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecc
Confidence            9999888 2 2234444444444556678899999999999999887555444 5554

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=82.53  E-value=18  Score=32.99  Aligned_cols=62  Identities=8%  Similarity=0.113  Sum_probs=37.8

Q ss_pred             hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCchHHHHHHHHHHHH
Q 036290          516 SWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDE--YILGTILNSCAAIGAYQRTKSIHPFVIK  577 (796)
Q Consensus       516 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~  577 (796)
                      .+..+...|++.|+.+.|++.|.++.+....|..  ..+-.+|..+...+++..+.........
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            4555666677777777777777777665444433  2345556666666676666666555544

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=82.47  E-value=8.5  Score=37.58  Aligned_cols=73  Identities=15%  Similarity=0.164  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCCHHHH
Q 036290          652 ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP-SPDCYGCLVDMLSRNGYLEDAKHVIEIM--------PFQPSPTVY  722 (796)
Q Consensus       652 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~  722 (796)
                      .++..++.++...|+++.+...++++.   ...| +...|..++.+|.+.|+...|+..++.+        ++.|...++
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li---~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~  230 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLI---ELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR  230 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHH---hcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence            456778888888999999999999998   4455 4788999999999999999999999877        466666554


Q ss_pred             HHHHH
Q 036290          723 RSLLS  727 (796)
Q Consensus       723 ~~l~~  727 (796)
                      .....
T Consensus       231 ~~y~~  235 (280)
T COG3629         231 ALYEE  235 (280)
T ss_pred             HHHHH
Confidence            44333

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=82.29  E-value=32  Score=30.33  Aligned_cols=48  Identities=17%  Similarity=0.154  Sum_probs=20.3

Q ss_pred             ccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          663 HKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       663 ~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      ..++.+++..++..+.   -++|. +..-..-...+.+.|+|.+|..+++++
T Consensus        22 ~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l   70 (160)
T PF09613_consen   22 RLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLREL   70 (160)
T ss_pred             ccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3344444444444444   33444 222222233344444555555444444

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=82.26  E-value=41  Score=35.55  Aligned_cols=63  Identities=16%  Similarity=0.184  Sum_probs=41.0

Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C---ChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036290          582 TEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N---DVIVYNTLIMAYAHHGLVSEAMEIFDKMKL  644 (796)
Q Consensus       582 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  644 (796)
                      +-..+-..+..+.-+.|+.++|.+.++++++. |   +......|+.++...+.+.++..++.+-.+
T Consensus       257 ~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  257 VLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             hhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence            33444445666666777777777777666653 2   233555677777777777777777777654

The molecular function of this protein is uncertain.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=81.48  E-value=3.5  Score=24.92  Aligned_cols=27  Identities=33%  Similarity=0.348  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036290          618 VYNTLIMAYAHHGLVSEAMEIFDKMKL  644 (796)
Q Consensus       618 ~~~~li~~~~~~g~~~~A~~~~~~m~~  644 (796)
                      .|..+...+...|++++|.+.|++..+
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            344555566666666666666666655

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.11  E-value=44  Score=30.52  Aligned_cols=88  Identities=10%  Similarity=0.047  Sum_probs=47.1

Q ss_pred             HHHHHhcCCHHHHHHHHhccCCCCChhHHHH-----HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036290          591 IDAYAKCGDIKGARMAFDQSFNSNDVIVYNT-----LIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKG  665 (796)
Q Consensus       591 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g  665 (796)
                      ...+..++++++|..-++..+..+.-..+..     |.+.....|.+++|+.+++...+.+..+  .....--+.+...|
T Consensus        96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~kg  173 (207)
T COG2976          96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAKG  173 (207)
T ss_pred             HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHcC
Confidence            4455666777777777655555442222222     3344556666777777666655433221  11222234556666


Q ss_pred             CHHHHHHHHHHhHhh
Q 036290          666 LVDKGCLLFKSMDSQ  680 (796)
Q Consensus       666 ~~~~A~~~~~~~~~~  680 (796)
                      +-++|..-|+.....
T Consensus       174 ~k~~Ar~ay~kAl~~  188 (207)
T COG2976         174 DKQEARAAYEKALES  188 (207)
T ss_pred             chHHHHHHHHHHHHc
Confidence            666666666666633

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.78  E-value=14  Score=36.07  Aligned_cols=101  Identities=15%  Similarity=0.101  Sum_probs=62.4

Q ss_pred             CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCCh-----hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 036290          579 GFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDV-----IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQAT  653 (796)
Q Consensus       579 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t  653 (796)
                      |......+...++..-....+++++...+-..-.+++.     .+-.+.++.+.+ =+.++++.++..=..-|+-||..+
T Consensus        59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~  137 (418)
T KOG4570|consen   59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFT  137 (418)
T ss_pred             CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccchhh
Confidence            33444444445555555556677776666333333211     111222333332 256678888877788888888888


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHhHhh
Q 036290          654 FVSVMSACSHKGLVDKGCLLFKSMDSQ  680 (796)
Q Consensus       654 ~~~ll~~~~~~g~~~~A~~~~~~~~~~  680 (796)
                      +..+|+.+.+.+++.+|..+...|..+
T Consensus       138 ~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  138 FCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            888888888888888888877776654

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=80.16  E-value=8.2  Score=35.54  Aligned_cols=74  Identities=16%  Similarity=0.179  Sum_probs=56.8

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-C----CCCCHHHHHHHH
Q 036290          653 TFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-P----FQPSPTVYRSLL  726 (796)
Q Consensus       653 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~----~~p~~~~~~~l~  726 (796)
                      |.+.-+..+.+.+++++|+...++-++   -+|. ..+-..+++.|+-.|+|++|..-++-. .    ..+...+|..++
T Consensus         3 Tl~~t~seLL~~~sL~dai~~a~~qVk---akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~li   79 (273)
T COG4455           3 TLRDTISELLDDNSLQDAIGLARDQVK---AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLI   79 (273)
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHh---cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence            345556777888999999999988773   3565 666778999999999999999877765 2    334557888888


Q ss_pred             HHH
Q 036290          727 SGC  729 (796)
Q Consensus       727 ~~~  729 (796)
                      .+-
T Consensus        80 r~e   82 (273)
T COG4455          80 RCE   82 (273)
T ss_pred             HHH
Confidence            774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	796
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	7e-13
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-04

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 71.8 bits (174), Expect = 7e-13
 Identities = 26/195 (13%), Positives = 54/195 (27%), Gaps = 6/195 (3%)

Query: 531 HEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAV 590
             A  +     +A E P E  L  +L       +    ++      +   + +     A 
Sbjct: 74  QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133

Query: 591 IDAYAKCGDIKGARMAFDQSFNSN------DVIVYNTLIMAYAHHGLVSEAMEIFDKMKL 644
                    +  A                  + +YN +++ +A  G   E + +   +K 
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193

Query: 645 ANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLE 704
           A L P   ++ + +     +              SQ G++        L+    R   L+
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253

Query: 705 DAKHVIEIMPFQPSP 719
               V       P  
Sbjct: 254 AVHKVKPTFSLPPQL 268

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 48.3 bits (113), Expect = 1e-05
 Identities = 19/166 (11%), Positives = 53/166 (31%), Gaps = 8/166 (4%)

Query: 252 ALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADK- 310
            LQ        D+ +   G   ++++      + A     + +  +  A  +      + 
Sbjct: 98  LLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR 157

Query: 311 ------DVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLD 364
                  +  +N +  G++      +   +      +G  P+ ++++  L+  G+     
Sbjct: 158 QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA 217

Query: 365 LGLQ-LQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVS 409
             ++         G   +   T+ L+    R   ++  H V    S
Sbjct: 218 GTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFS 263

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 3e-06
 Identities = 62/465 (13%), Positives = 116/465 (24%), Gaps = 172/465 (36%)

Query: 27  RLCGNNQ-FCSDSFLRKDPIFLAKSLSLSENLKS--RVLGTQVHG--------------- 68
           RL  +NQ F   +  R  P      L L + L          + G               
Sbjct: 118 RLYNDNQVFAKYNVSRLQPY-----LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172

Query: 69  -HIVKLGFTNDIF----------------LQN---NLIAMYSKCGYFGWGLRV-FDEMAE 107
            + V+      IF                LQ     +   ++        +++    +  
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 108 --RNLVSW-----TLIVSAAIQNGE----FDMGLKMYVDMKTNGFMPNEFAVGSVMKVCV 156
             R L+        L+V   +QN +    F++  K+ +   T  F      + +     +
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL---TTRFKQVTDFLSAATTTHI 289

Query: 157 SMGASEFGY----SIHCFA--LKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDD 210
           S+                   L  R +  P    +       +  +A + R       D 
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI--IAESIR-------DG 340

Query: 211 VGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHG 270
           +  W+     + H     + L  +               +N L       +    R+   
Sbjct: 341 LATWD----NWKH--VNCDKLTTIIES-----------SLNVL-------EPAEYRK--- 373

Query: 271 LIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADKDV-ISWNTL--FGGFSENKN 327
                              M+           VF         I    L          +
Sbjct: 374 -------------------MF-------DRLSVFP----PSAHIPTILLSLIWFDVIKSD 403

Query: 328 PGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCL---ALHCGFLDEENV 384
                +  HK+ L   +P   T SI          + L L+++     ALH   +D    
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISI--------PSIYLELKVKLENEYALHRSIVDH--- 452

Query: 385 TSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNEL---LSGYCFN 426
                Y   +          FD+         + +   L  Y ++
Sbjct: 453 -----YNIPKT---------FDS--------DDLIPPYLDQYFYS 475

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 4e-05
 Identities = 84/577 (14%), Positives = 159/577 (27%), Gaps = 171/577 (29%)

Query: 237 MLFEGITMDKYTFINALQGC--SLVADFD---IGRQIHGLIIRSEVECSISIVNA----- 286
           M FE      Y + + L     + V +FD   +      ++ + E++    I+ +     
Sbjct: 7   MDFETGEHQ-YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID---HIIMSKDAVS 62

Query: 287 ----LIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFS-ENKNPGQTASLF------ 335
               L    + S   +   K  E +   +   +  L      E + P     ++      
Sbjct: 63  GTLRLFWT-LLSKQEEMVQKFVEEVLRINY-KF--LMSPIKTEQRQPSMMTRMYIEQRDR 118

Query: 336 -----HKFI-LSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALH----CGFLDEENVT 385
                  F   + SR         LRQ   LL+L      + + +      G        
Sbjct: 119 LYNDNQVFAKYNVSRLQPYL---KLRQA--LLELRPA---KNVLIDGVLGSG-------K 163

Query: 386 SSLIYMFCRCGAVE--MAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESG 443
           + +    C    V+  M   +F          W  L    C       VL+    +    
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIF----------W--LNLKNC--NSPETVLEMLQKLL-YQ 208

Query: 444 VEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDN-- 501
           ++ N             S N ++      A ++    S  Y    L+        L N  
Sbjct: 209 IDPNWT------SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV--------LLNVQ 254

Query: 502 ------SFEFS----------NGAERLDMASWGAMMSALVHQGHNH-EAVTIFHSLVE-- 542
                 +F  S             + L  A+   +            E  ++    ++  
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 543 AGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKG 602
             + P E                    + +P  + +     +    A  D +      K 
Sbjct: 315 PQDLPRE------------------VLTTNPRRLSI-IAESIRDGLATWDNWKHVNCDK- 354

Query: 603 ARMAFDQSFNS-----------------NDV-IVYNTLIMAYAHHGLVSEAMEIFDKMK- 643
                + S N                      I    L + +    + S+ M + +K+  
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF-DVIKSDVMVVVNKLHK 413

Query: 644 --LANLQPSQATFVSVMS------------ACSHKGLVDKGCLLFKSMDSQYGMQPSPDC 689
             L   QP ++T  S+ S               H+ +VD   +  K+ DS   + P  D 
Sbjct: 414 YSLVEKQPKESTI-SIPSIYLELKVKLENEYALHRSIVDHYNIP-KTFDSDDLIPPYLDQ 471

Query: 690 YGCLVDMLSRNGY-LEDAKHVIEIMPFQPSPTVYRSL 725
           Y       S  G+ L++ +H   +  F     V+   
Sbjct: 472 Y-----FYSHIGHHLKNIEHPERMTLF---RMVFLDF 500

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 6e-05
 Identities = 49/316 (15%), Positives = 97/316 (30%), Gaps = 93/316 (29%)

Query: 482 CGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLV 541
           C  +   + KS ++  ++D+     +         W      L+ +      V  F   V
Sbjct: 35  CKDV-QDMPKSILSKEEIDHIIMSKDAVSGTLRLFW-----TLLSKQEE--MVQKF---V 83

Query: 542 EAGEKPD-EYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDI 600
           E   + + ++++  I           +T+   P        T +Y+              
Sbjct: 84  EEVLRINYKFLMSPI-----------KTEQRQP-----SMMTRMYIEQR----------- 116

Query: 601 KGARMAFDQSFNSNDVIV-YNTLIMAYAHHGLVSEAMEIFDKMK--LANLQPSQATFVSV 657
                  D+ +N N V   YN           VS   + + K++  L  L+P++   +  
Sbjct: 117 -------DRLYNDNQVFAKYN-----------VSRL-QPYLKLRQALLELRPAKNVLIDG 157

Query: 658 MSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMP--- 714
           +      G   K  +      S Y +Q   D     +++          + V+E++    
Sbjct: 158 VLGS---G---KTWVALDVCLS-YKVQCKMDFKIFWLNL----KNCNSPETVLEMLQKLL 206

Query: 715 FQPSPTVYRSLLSGCRIHGNKELG-EWASEKLLLLLPKNDAAHVLLSKRKRQREGNLLDH 773
           +Q  P    +  S      N +L       +L  LL      + LL          +L +
Sbjct: 207 YQIDP----NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL----------VLLN 252

Query: 774 EGVCNVNDGIKTVDLK 789
             V N        +L 
Sbjct: 253 --VQNAKA-WNAFNLS 265

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 34/308 (11%), Positives = 83/308 (26%), Gaps = 54/308 (17%)

Query: 487 SSLIKSYVNFGQLDNSFEFSNGAERLD---MASWGAMMSALVHQGHNHEAVTIFHSLVEA 543
            SL + +         ++ ++     D    +     +  LV     +E   + H LV+ 
Sbjct: 26  VSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL 85

Query: 544 GEKPDE----YILGTILNSC-----AAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAY 594
              P      + +G            A     +  ++             ++A     ++
Sbjct: 86  --YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK------TYGPAWIAYGH--SF 135

Query: 595 AKCGDIKGARMAFDQ--SFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLA-NLQPSQ 651
           A   +   A  A+           +    + + Y        A   F +   A ++ P  
Sbjct: 136 AVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQ---ALSIAPED 192

Query: 652 ATFVSVMSACSHKGLV--------------DKGCLLFKSMDSQYGMQPSPDCYGCLVDML 697
                        G+V                     K++ ++  +         L  + 
Sbjct: 193 PF------VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246

Query: 698 SRNGYLEDA----KHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKND 753
            +     +A    +  + ++P   + + Y ++     + GN E         L L   + 
Sbjct: 247 RKLKKYAEALDYHRQALVLIP--QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT 304

Query: 754 AAHVLLSK 761
            +  +L  
Sbjct: 305 FSVTMLGH 312

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 24/175 (13%), Positives = 42/175 (24%), Gaps = 24/175 (13%)

Query: 492 SYVNFGQLDNSFEFSNGAERLD---MASWGAMMSALVHQGHNHEAVTIFHSLVEAGE-KP 547
                     + E  N  E         +               A     +         
Sbjct: 12  FLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATK 71

Query: 548 DE----YILGTILNSC----AAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGD 599
            +       G IL        AI  YQ                ++Y        +   G+
Sbjct: 72  AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT------RLDMYGQIG--SYFYNKGN 123

Query: 600 IKGARMAFDQ--SFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQA 652
              A    ++     + D  V+  L  AY ++    +A   F K+    L+P+  
Sbjct: 124 FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKV--LELKPNIY 176

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 21/168 (12%), Positives = 52/168 (30%), Gaps = 23/168 (13%)

Query: 487 SSLIKSYVNFGQLDNSFEFSNGAERLD---MASWGAMMSALVHQGHNHEAVTIFHSLVEA 543
                +     +  +    +     +D   +  +   +++L   G  ++   I + LV+ 
Sbjct: 309 LCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVD- 367

Query: 544 GEKPDE----YILGTILNSC----AAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYA 595
              P++      +G           A   + ++ ++ P           ++  A   ++A
Sbjct: 368 -RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ------FGPAWIGFAH--SFA 418

Query: 596 KCGDIKGARMAFDQ--SFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDK 641
             G+   A  A+           + Y  L M +   G +  A E    
Sbjct: 419 IEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQS 466

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	796
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.94
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.94
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.94
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.93
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.89
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.86
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.85
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.85
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.85
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.85
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.84
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.81
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.78
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.75
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.74
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.74
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.73
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.72
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.7
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.69
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.67
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.65
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.65
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.64
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.63
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.62
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.62
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.62
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.61
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.61
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.61
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.58
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.57
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.53
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.5
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.48
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.45
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.44
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.43
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.42
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.42
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.41
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.41
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.4
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.39
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.38
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.37
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.37
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.37
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.35
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.34
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.32
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.31
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.3
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.3
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.28
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.27
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.26
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.26
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.25
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.22
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.21
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.21
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.2
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.2
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.18
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.17
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.15
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.13
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.12
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.11
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.09
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.07
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.07
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.06
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.01
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.99
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.92
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.92
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.91
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.9
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.9
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.89
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.87
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.87
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.84
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.84
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.82
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.81
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.79
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.78
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.74
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.72
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.71
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.7
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.68
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.67
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.67
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.64
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.62
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.62
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.61
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.59
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.58
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.56
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.56
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.55
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.55
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.54
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.51
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.51
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.51
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.5
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.49
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.46
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.45
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.43
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.43
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.41
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.39
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.37
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.36
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.35
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.34
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.33
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.31
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.3
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.27
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.25
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.24
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.24
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.23
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.22
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.22
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.21
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.2
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.19
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.18
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.18
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.17
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.16
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.15
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.15
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.15
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.14
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.14
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.13
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.13
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.13
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.11
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.11
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.08
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.08
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.07
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.07
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.05
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.05
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.05
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.02
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.02
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.0
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.99
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.98
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.96
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.95
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.93
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.91
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.91
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.9
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.9
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.85
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.85
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.85
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.84
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.82
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.79
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.79
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.76
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.71
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.69
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.66
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.65
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.62
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.61
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.6
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	97.58
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.56
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.54
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.53
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.46
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.45
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.39
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.37
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.34
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.34
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.29
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.22
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.15
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.13
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	97.12
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.08
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.04
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.02
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.95
1klx_A	138	Cysteine rich protein B; structural genomics, heli	96.9
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.88
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	96.87
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.85
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.72
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.55
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.55
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.51
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.5
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.34
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.09
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.06
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.89
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.88
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.56
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	95.47
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	95.46
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	95.2
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.19
1pc2_A	152	Mitochondria fission protein; unknown function; NM	94.51
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	93.86
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	93.5
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	93.15
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	92.75
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	92.72
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	92.56
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	91.17
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	91.03
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	90.43
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	90.0
2p58_C	116	Putative type III secretion protein YSCG; type III	89.45
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	89.17
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	89.12
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	88.01
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	87.74
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	87.68
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	87.44
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	87.09
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	86.97
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	86.94
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	86.72
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	86.7
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	86.65
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	86.48
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	86.27
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	85.26
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	84.95
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	83.87
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	82.32
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	81.97
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	81.57
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	81.47
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	80.17

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.9e-38  Score=357.60  Aligned_cols=495  Identities=10%  Similarity=-0.047  Sum_probs=343.7

Q ss_pred             HHccCChhHHHHHhhccCCCCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHHHHHH
Q 036290          190 YAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIH  269 (796)
Q Consensus       190 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~  269 (796)
                      +.+.|....+...++.++.+++..|+.++..|.+.|++++|..+|++|.+  ..|+..++..+..+|...|++++|..++
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~  140 (597)
T 2xpi_A           63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL  140 (597)
T ss_dssp             -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence            45677888888889988888999999999999999999999999999985  5678899999999999999999999999


Q ss_pred             HHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCCC-------------------CcchHHHHHHHHHhCCCccH
Q 036290          270 GLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADK-------------------DVISWNTLFGGFSENKNPGQ  330 (796)
Q Consensus       270 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~~  330 (796)
                      +.+...  +++..+++.++.+|.+.|++++|.++|+++...                   +..+|+.++.+|.+.|++++
T Consensus       141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  218 (597)
T 2xpi_A          141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR  218 (597)
T ss_dssp             HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence            987543  678899999999999999999999999965433                   37789999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCcc-hHHHHHHHhcccCChHHHH--HH-HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHH
Q 036290          331 TASLFHKFILSGSRPNHV-TFSILLRQCGKLLDLDLGL--QL-QCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFD  406 (796)
Q Consensus       331 a~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~--~~-~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~  406 (796)
                      |+++|++|.+.+  |+.. .+..+...+...+..+.+.  .+ +..+...+..+...+|+.++..|.+.|++++|.++|+
T Consensus       219 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~  296 (597)
T 2xpi_A          219 AKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS  296 (597)
T ss_dssp             HHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence            999999998753  4433 3333433333322222111  11 3333333434444555556666666677777777776


Q ss_pred             hCCC--CChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCch
Q 036290          407 NVSY--KNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGY  484 (796)
Q Consensus       407 ~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  484 (796)
                      ++.+  ++..+|+.++..|.+.|++++|..+|+++.+.                                   + +.+..
T Consensus       297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------------------------------~-~~~~~  340 (597)
T 2xpi_A          297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI-----------------------------------D-PYNLD  340 (597)
T ss_dssp             TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------C-TTCCT
T ss_pred             HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc-----------------------------------C-cccHH
Confidence            6665  55566666666666666666666666665543                                   2 22333


Q ss_pred             hHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc
Q 036290          485 ICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGA  564 (796)
Q Consensus       485 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~  564 (796)
                      ++.                               .++.++.+.|++++|.++++++.+.. +.+..++..+...|.+.|+
T Consensus       341 ~~~-------------------------------~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~  388 (597)
T 2xpi_A          341 VYP-------------------------------LHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNK  388 (597)
T ss_dssp             THH-------------------------------HHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTC
T ss_pred             HHH-------------------------------HHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhcc
Confidence            333                               33444444444444444444444321 3344445555555555555


Q ss_pred             hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 036290          565 YQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKM  642 (796)
Q Consensus       565 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m  642 (796)
                      +++|.++|+.+.+.... +..+++.++.+|.+.|++++|.++|++++..  ++..+|+.++.+|.+.|++++|.++|+++
T Consensus       389 ~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  467 (597)
T 2xpi_A          389 ISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSS  467 (597)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            55555555555443322 4556666777777777777777777554432  47788888999999999999999999999


Q ss_pred             HHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhc---CCCCC--chHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 036290          643 KLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQY---GMQPS--PDCYGCLVDMLSRNGYLEDAKHVIEIM-PF  715 (796)
Q Consensus       643 ~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~  715 (796)
                      .+.  .| +..+|..++..|.+.|++++|.++|+++.+..   +..|+  ..+|..++.+|.+.|++++|.+.++++ ..
T Consensus       468 ~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  545 (597)
T 2xpi_A          468 YAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL  545 (597)
T ss_dssp             HHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            884  44 67889999999999999999999999987442   55777  678999999999999999999999988 33


Q ss_pred             CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290          716 QP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK  761 (796)
Q Consensus       716 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  761 (796)
                      .| +..+|..++.+|.+.|++++|.+.++++++++|+++.++..|++
T Consensus       546 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~  592 (597)
T 2xpi_A          546 STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKR  592 (597)
T ss_dssp             SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence            44 77899999999999999999999999999999999988877643

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=9.8e-38  Score=351.81  Aligned_cols=347  Identities=8%  Similarity=-0.060  Sum_probs=260.0

Q ss_pred             HHHccCChhHHHHHhcccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChhHHHHH
Q 036290           88 MYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSI  167 (796)
Q Consensus        88 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~  167 (796)
                      .+.+.|....+...|+.++.+++..|+.++..|.+.|++++|+.+|++|..  ..|+..++..+..+|.+.|+++.|..+
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~  139 (597)
T 2xpi_A           62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL  139 (597)
T ss_dssp             --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence            356778888899999999989999999999999999999999999999984  568889999999999999999999999


Q ss_pred             HHHHHHhcCCCChhHhhHHHHHHHccCChhHHHHHhhccCCC-------------------CceeHHHHHHHHHhCCCch
Q 036290          168 HCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSD-------------------DVGCWNAMIGGYAHCGYGF  228 (796)
Q Consensus       168 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~  228 (796)
                      ++.+...  +++..+++.++.+|.+.|++++|.++|+++...                   +..+|+.++.+|.+.|+++
T Consensus       140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  217 (597)
T 2xpi_A          140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD  217 (597)
T ss_dssp             HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence            9987643  678999999999999999999999999964433                   3778999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchH--HHHH-HHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHh
Q 036290          229 EALNVVSSMLFEGITMDKYTFINALQGCSLVADFDI--GRQI-HGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFE  305 (796)
Q Consensus       229 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~--a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  305 (796)
                      +|+++|++|.+.+. -+...+..+...+...++.+.  +..+ +..+...+..+...+|+.++..|.+.|++++|.++|+
T Consensus       218 ~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~  296 (597)
T 2xpi_A          218 RAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS  296 (597)
T ss_dssp             HHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence            99999999988542 234445445444443332222  1122 4455555555666778888999999999999999999


Q ss_pred             hcCC--CCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchh
Q 036290          306 RMAD--KDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEEN  383 (796)
Q Consensus       306 ~~~~--~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~  383 (796)
                      ++.+  ++..+|+.++..+.+.|++++|+++|+++.+.+ +.+..++..++.++.+.|+.++|.++++.+.+.. +.+..
T Consensus       297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~  374 (597)
T 2xpi_A          297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAV  374 (597)
T ss_dssp             TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHH
T ss_pred             HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHH
Confidence            9987  789999999999999999999999999998765 3367788888888888888888888888887553 44666


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhCCC---CChhhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 036290          384 VTSSLIYMFCRCGAVEMAHSVFDNVSY---KNITTWNELLSGYCFNCCDADVLKTFCNIWE  441 (796)
Q Consensus       384 ~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  441 (796)
                      +++.++.+|.+.|++++|.++|+++.+   .+..+|+.++..|.+.|++++|+++|+++.+
T Consensus       375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  435 (597)
T 2xpi_A          375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR  435 (597)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            777777777777777777777776542   3455666666666666666666666666654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.94  E-value=1.7e-26  Score=247.79  Aligned_cols=214  Identities=14%  Similarity=0.078  Sum_probs=143.6

Q ss_pred             HHHHHHHHHHHcCCCCCc-chHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          330 QTASLFHKFILSGSRPNH-VTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNV  408 (796)
Q Consensus       330 ~a~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~  408 (796)
                      .+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|+.|.+.|+.||..+|++||.+|++.+...++       
T Consensus         8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------   80 (501)
T 4g26_A            8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-------   80 (501)
T ss_dssp             ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred             hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence            445566677777665544 357778888888888888888888888888888888888888888877654331       


Q ss_pred             CCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhH
Q 036290          409 SYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSS  488 (796)
Q Consensus       409 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  488 (796)
                                     .+.+..++|.++|++|...|+.||..||+++|.+|++.|++++|.+++++|.+.|+.||..+|++
T Consensus        81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~  145 (501)
T 4g26_A           81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP  145 (501)
T ss_dssp             ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence                           22345678889999999999999999999999999999999999999999999998776665555


Q ss_pred             HHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHH
Q 036290          489 LIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRT  568 (796)
Q Consensus       489 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a  568 (796)
                      +|.+|                               ++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|
T Consensus       146 lI~~~-------------------------------~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A  194 (501)
T 4g26_A          146 ALFGF-------------------------------CRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKV  194 (501)
T ss_dssp             HHHHH-------------------------------HHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHH-------------------------------HHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHH
Confidence            55554                               44555555555555555556666666666666666666666666


Q ss_pred             HHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 036290          569 KSIHPFVIKLGFNTEVYVASAVIDAYAK  596 (796)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~~~~li~~~~~  596 (796)
                      .+++++|.+.|..|+..+|+.++..|+.
T Consensus       195 ~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          195 YKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             HHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            6666666666666666666665555543

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.94  E-value=3.2e-26  Score=245.68  Aligned_cols=210  Identities=10%  Similarity=0.051  Sum_probs=138.7

Q ss_pred             HHHHHHHHHHhcCCcccH-HHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcC
Q 036290          431 DVLKTFCNIWESGVEVNG-CTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGA  509 (796)
Q Consensus       431 ~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  509 (796)
                      .+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+...++       
T Consensus         8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------   80 (501)
T 4g26_A            8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-------   80 (501)
T ss_dssp             ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred             hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence            445566667666665443 357778888888888888888888888888888888888888888877765532       


Q ss_pred             CCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHH
Q 036290          510 ERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASA  589 (796)
Q Consensus       510 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  589 (796)
                                     .+.+..++|.++|++|...|+.||..||+++|.+|++.|+++.|.+++++|.+.|+.||..+|++
T Consensus        81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~  145 (501)
T 4g26_A           81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP  145 (501)
T ss_dssp             ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence                           23455788999999999999999999999999999999999999999999999999887777766


Q ss_pred             HHHHHHhcCCHHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 036290          590 VIDAYAKCGDIKGARMAFDQSFNS---NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACS  662 (796)
Q Consensus       590 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~  662 (796)
                      +|.+|++.|++++|.++|+++...   ||..+|++||.+|++.|++++|.+++++|++.|..|+..||+.++..|+
T Consensus       146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~  221 (501)
T 4g26_A          146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK  221 (501)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence            666666666555555555333222   3444444444444444444444444444444444444444444444443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.94  E-value=7.9e-24  Score=224.03  Aligned_cols=360  Identities=13%  Similarity=0.043  Sum_probs=256.0

Q ss_pred             HhcCChHHHHHHHHhCCC--C-ChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHH
Q 036290          393 CRCGAVEMAHSVFDNVSY--K-NITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQ  469 (796)
Q Consensus       393 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~  469 (796)
                      .+.|++++|...+..+..  | +...+..+...+.+.|++++|...++..... .+.+..+|..+...+...|++++|..
T Consensus        10 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~~~A~~   88 (388)
T 1w3b_A           10 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQEAIE   88 (388)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHHHHHH
Confidence            334444444444433321  1 2233333444444455555555555444432 12344455555555555555555555


Q ss_pred             HHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCC--C-CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 036290          470 IHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAER--L-DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEK  546 (796)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~  546 (796)
                      .++.+.+.. |.+...+..+..++.+.|++++|.+.|+++.+  | +...+..+...+...|++++|.+.|+++.+.. +
T Consensus        89 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p  166 (388)
T 1w3b_A           89 HYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-P  166 (388)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-T
T ss_pred             HHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-C
Confidence            555555543 33445566666666667777777666665543  3 33455666667777788888888888877652 3


Q ss_pred             CCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHH
Q 036290          547 PDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIM  624 (796)
Q Consensus       547 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~  624 (796)
                      -+..++..+...+...|+++.|...++.+.+.+.. +...+..+...+...|++++|...+++.+..  .+..++..+..
T Consensus       167 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  245 (388)
T 1w3b_A          167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC  245 (388)
T ss_dssp             TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHH
Confidence            34667777788888888888888888888876544 5667788888888999999998888665543  36788889999


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCh
Q 036290          625 AYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYL  703 (796)
Q Consensus       625 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  703 (796)
                      .+...|++++|.+.++++.+  ..| +..+|..+...+.+.|++++|...++++.+.  .+.+..++..++.++.+.|++
T Consensus       246 ~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~  321 (388)
T 1w3b_A          246 VYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNI  321 (388)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCH
T ss_pred             HHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCH
Confidence            99999999999999999998  556 5678888999999999999999999999844  234478899999999999999


Q ss_pred             HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEec
Q 036290          704 EDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLS  760 (796)
Q Consensus       704 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~  760 (796)
                      ++|.+.++++ ...| +..+|..++..+.+.|++++|...++++++++|+++.++..++
T Consensus       322 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg  380 (388)
T 1w3b_A          322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG  380 (388)
T ss_dssp             HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHH
Confidence            9999999988 4555 4678999999999999999999999999999999888776664

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.93  E-value=1.5e-22  Score=214.15  Aligned_cols=370  Identities=14%  Similarity=0.105  Sum_probs=251.3

Q ss_pred             HHHHHhCCCccHHHHHHHHHHHcCCCCCcc-hHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 036290          319 FGGFSENKNPGQTASLFHKFILSGSRPNHV-TFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGA  397 (796)
Q Consensus       319 i~~~~~~~~~~~a~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~  397 (796)
                      ...+.+.|++++|.+.++++.+.  .|+.. .+..+...+...|++++|...+....+.. +.+...+..+...+.+.|+
T Consensus         6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~   82 (388)
T 1w3b_A            6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence            34556677777777777776654  34433 33334444455666666666666555542 3345555556666666666


Q ss_pred             hHHHHHHHHhCCC--C-ChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHH
Q 036290          398 VEMAHSVFDNVSY--K-NITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAI  474 (796)
Q Consensus       398 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~  474 (796)
                      +++|...|+++..  | +..+|..+...+.+.|++++|...|+++.+                                 
T Consensus        83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---------------------------------  129 (388)
T 1w3b_A           83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ---------------------------------  129 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH---------------------------------
T ss_pred             HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------------------------
Confidence            6666665555432  2 233455555555555555555555555544                                 


Q ss_pred             HHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCC---CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH
Q 036290          475 IKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAER---LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYI  551 (796)
Q Consensus       475 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t  551 (796)
                        .. |.+...+..+...+...|++++|.+.|+++.+   .+..+|..+...+.+.|++++|...|+++.+.. +.+...
T Consensus       130 --~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~  205 (388)
T 1w3b_A          130 --YN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDA  205 (388)
T ss_dssp             --HC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             --hC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHH
Confidence              32 22334444455555555555555555554432   245567777777777777777777777776653 334566


Q ss_pred             HHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhc
Q 036290          552 LGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHH  629 (796)
Q Consensus       552 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~  629 (796)
                      +..+...+...|+++.|...++...+.... +..++..+...|.+.|++++|.+.+++.+..  .+..+|..+...+.+.
T Consensus       206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  284 (388)
T 1w3b_A          206 YINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK  284 (388)
T ss_dssp             HHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence            777777777888888888888777766543 5667778888888888888888888666543  3667888999999999


Q ss_pred             CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHH
Q 036290          630 GLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAK  707 (796)
Q Consensus       630 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~  707 (796)
                      |++++|.+.++++.+.  .| +..++..+...+...|++++|...++++.   ...|+ ..++..++.+|.+.|++++|.
T Consensus       285 g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~g~~~~A~  359 (388)
T 1w3b_A          285 GSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKAL---EVFPEFAAAHSNLASVLQQQGKLQEAL  359 (388)
T ss_dssp             SCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT---TSCTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred             CCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999884  44 77888899999999999999999999988   45666 778889999999999999999


Q ss_pred             HHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 036290          708 HVIEIM-PFQPS-PTVYRSLLSGCRIHGN  734 (796)
Q Consensus       708 ~~~~~~-~~~p~-~~~~~~l~~~~~~~g~  734 (796)
                      +.++++ ...|+ ...|..+...+...|+
T Consensus       360 ~~~~~a~~~~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          360 MHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence            999888 56664 5677777777766553

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2.1e-21  Score=213.90  Aligned_cols=439  Identities=13%  Similarity=-0.050  Sum_probs=275.9

Q ss_pred             HHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 036290          315 WNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCR  394 (796)
Q Consensus       315 ~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~  394 (796)
                      |......+.+.|++++|+..|+++.+..  |+...+..+..++...|++++|...++.+.+.. +.+...+..+..++.+
T Consensus         9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~   85 (514)
T 2gw1_A            9 LKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG   85 (514)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence            3344455555666666666666665543  455555555566666666666666666655543 3344455556666666


Q ss_pred             cCChHHHHHHHHhCCC---CChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHH
Q 036290          395 CGAVEMAHSVFDNVSY---KNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIH  471 (796)
Q Consensus       395 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~  471 (796)
                      .|++++|...|+.+..   .+......++..+........+.+.+..+...+..|+...+..-...............+.
T Consensus        86 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (514)
T 2gw1_A           86 LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA  165 (514)
T ss_dssp             TTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred             HhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence            6666666666655432   1222222333322222222222222221111111111111100000000000000000000


Q ss_pred             HHHHHhCC---------CCCchhHhHHHHHHHh---cCCcchHHHHHhcCCC-----------------CCHhhHHHHHH
Q 036290          472 GAIIKTGF---------SSCGYICSSLIKSYVN---FGQLDNSFEFSNGAER-----------------LDMASWGAMMS  522 (796)
Q Consensus       472 ~~~~~~~~---------~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----------------~~~~~~~~li~  522 (796)
                      ..+.....         +.+...+......+..   .|++++|...|+.+.+                 .+...|..+..
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (514)
T 2gw1_A          166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI  245 (514)
T ss_dssp             HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence            00000000         1112222333333332   5666666666554432                 13456777888


Q ss_pred             HHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 036290          523 ALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKG  602 (796)
Q Consensus       523 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  602 (796)
                      .+...|++++|...|+++.+..  |+...+..+...+...|+++.|...++.+.+.... +...+..+...|...|++++
T Consensus       246 ~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~  322 (514)
T 2gw1_A          246 FKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQ  322 (514)
T ss_dssp             HHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTH
T ss_pred             HHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHH
Confidence            8889999999999999988764  44778888888999999999999999988876544 56788889999999999999


Q ss_pred             HHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHh
Q 036290          603 ARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDS  679 (796)
Q Consensus       603 A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~  679 (796)
                      |...+++.+..  .+...+..+...+...|++++|...++++.+  ..| +...+..+...+...|++++|...++++..
T Consensus       323 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  400 (514)
T 2gw1_A          323 AGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE  400 (514)
T ss_dssp             HHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            99999766543  4677888999999999999999999999988  345 567788888999999999999999999885


Q ss_pred             hcCCCCC----chHHHHHHHHHHh---cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 036290          680 QYGMQPS----PDCYGCLVDMLSR---NGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLP  750 (796)
Q Consensus       680 ~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  750 (796)
                      ...-.++    ...+..++.++..   .|++++|.+.++++ ...| +..+|..+...+.+.|++++|...++++++++|
T Consensus       401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  480 (514)
T 2gw1_A          401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR  480 (514)
T ss_dssp             HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred             hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence            4222222    3388899999999   99999999999987 3344 567888999999999999999999999999999


Q ss_pred             CCCcceEEecC
Q 036290          751 KNDAAHVLLSK  761 (796)
Q Consensus       751 ~~~~~~~~l~~  761 (796)
                      +++..+..+..
T Consensus       481 ~~~~~~~~~~~  491 (514)
T 2gw1_A          481 TMEEKLQAITF  491 (514)
T ss_dssp             SHHHHHHHHHH
T ss_pred             ccHHHHHHHHH
Confidence            98887665543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.86  E-value=3e-19  Score=192.97  Aligned_cols=345  Identities=12%  Similarity=0.039  Sum_probs=194.5

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHHhCCC---CChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHH
Q 036290          381 EENVTSSLIYMFCRCGAVEMAHSVFDNVSY---KNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVET  457 (796)
Q Consensus       381 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~  457 (796)
                      +...+..+...+.+.|++++|...|+.+..   .+..+|..+...+...|++++|+..|+++.+.+ +.+...+..+...
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~  103 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL  103 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence            344455555555555555555555554432   234455555555555555555555555554432 1123334444444


Q ss_pred             hcccCcHHHHHHHHHHHHHhCCCCCc---hhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHH
Q 036290          458 CCRSENQQMVGQIHGAIIKTGFSSCG---YICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAV  534 (796)
Q Consensus       458 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~  534 (796)
                      +...|++++|...++.+.+.. +.+.   ..+..+...+..                   ..+..+...+.+.|++++|.
T Consensus       104 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~~~~~~A~  163 (450)
T 2y4t_A          104 LLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEM-------------------QRLRSQALNAFGSGDYTAAI  163 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHH-------------------HHHHHHHHHHHHcCCHHHHH
Confidence            444444444444444444322 1112   222222222110                   01112233466677777777


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-
Q 036290          535 TIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-  613 (796)
Q Consensus       535 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-  613 (796)
                      ..|+++.+.. +.+...+..+...+...|+++.|.+.++.+.+.... +...+..+..+|...|++++|...+++.+.. 
T Consensus       164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  241 (450)
T 2y4t_A          164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD  241 (450)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            7777776542 345566666666777777777777777766664332 4566666677777777777777766544432 


Q ss_pred             C-ChhHHHHH------------HHHHHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHH
Q 036290          614 N-DVIVYNTL------------IMAYAHHGLVSEAMEIFDKMKLANLQPS-----QATFVSVMSACSHKGLVDKGCLLFK  675 (796)
Q Consensus       614 ~-~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~g~~~~A~~~~~  675 (796)
                      | +...+..+            ...+...|++++|...|+++.+  ..|+     ...+..+...+.+.|++++|+..++
T Consensus       242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  319 (450)
T 2y4t_A          242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS  319 (450)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            2 33333333            6677777777777777777777  4454     3356666777777777777777777


Q ss_pred             HhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC-----Ch
Q 036290          676 SMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS-PTVYRSLLSG------------CRIHG-----NK  735 (796)
Q Consensus       676 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~------------~~~~g-----~~  735 (796)
                      ++...   .|+ ...|..++.+|...|++++|.+.++++ ...|+ ...+..+..+            |...|     +.
T Consensus       320 ~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~  396 (450)
T 2y4t_A          320 EVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKK  396 (450)
T ss_dssp             HHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCT
T ss_pred             HHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCH
Confidence            77633   443 677777777777777777777777776 55554 3445444422            22233     55


Q ss_pred             HHHHHHHHH-HHccCCCCC
Q 036290          736 ELGEWASEK-LLLLLPKND  753 (796)
Q Consensus       736 ~~A~~~~~~-~~~~~p~~~  753 (796)
                      +++++.+++ +++..|++.
T Consensus       397 ~~~~~~y~~~~l~~~pd~~  415 (450)
T 2y4t_A          397 QEIIKAYRKLALQWHPDNF  415 (450)
T ss_dssp             THHHHHHHHHHHHSCGGGC
T ss_pred             HHHHHHHHHHHHHhCCCCC
Confidence            666777775 666777643

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.85  E-value=5.3e-19  Score=194.70  Aligned_cols=439  Identities=8%  Similarity=-0.081  Sum_probs=219.1

Q ss_pred             eHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhh
Q 036290          213 CWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYI  292 (796)
Q Consensus       213 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  292 (796)
                      .|...-..+.+.|++++|+..|+++.+.+  |+...+..+..++...|++++|...++.+.+.+ +.+...+..+..+|.
T Consensus         8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~   84 (514)
T 2gw1_A            8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE   84 (514)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence            34455566777777777777777776654  566666666666666666666666666665543 223344444444444


Q ss_pred             cCCCHHHHHHHHhhcCC---CCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHH
Q 036290          293 KSSGMDYAFKVFERMAD---KDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQL  369 (796)
Q Consensus       293 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~  369 (796)
                      +.|++++|...|+.+..   ++......++..+........+.+.+..+...+..|+...+..-..              
T Consensus        85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------------  150 (514)
T 2gw1_A           85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKE--------------  150 (514)
T ss_dssp             HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------------------
T ss_pred             HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhH--------------
Confidence            44444444444444321   1122222222222222222222222222222221221111110000              


Q ss_pred             HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCC-ChhhHHHHHHHHHh---cCCchHHHHHHHHHHh----
Q 036290          370 QCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYK-NITTWNELLSGYCF---NCCDADVLKTFCNIWE----  441 (796)
Q Consensus       370 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~----  441 (796)
                        ........|+.......+    .........   ..+..| +...+......+..   .|++++|...|+++.+    
T Consensus       151 --~~~~~~~~~~~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  221 (514)
T 2gw1_A          151 --RKDKQENLPSVTSMASFF----GIFKPELTF---ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEE  221 (514)
T ss_dssp             --------CCCCHHHHHHHH----TTSCCCCCC---SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             --HHhhccCCchhHHHHHHH----hhcCHHHHH---HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhh
Confidence              000001111111111110    000000000   000111 13334444444443   7888888888888776    


Q ss_pred             -cCC--------cccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCC-
Q 036290          442 -SGV--------EVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAER-  511 (796)
Q Consensus       442 -~g~--------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-  511 (796)
                       ...        +.+..++..+...+...|+++.|...++.+.+....  ...+..+...|...|++++|.+.++.+.+ 
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  299 (514)
T 2gw1_A          222 QLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKL  299 (514)
T ss_dssp             HTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT
T ss_pred             hhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc
Confidence             211        223445666666777777788887777777776532  66666677777777777777776665543 


Q ss_pred             --CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHH
Q 036290          512 --LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASA  589 (796)
Q Consensus       512 --~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  589 (796)
                        .+...|..+...+...|++++|...+++..+.. +.+...+..+...+...|+++.|...++.+.+...         
T Consensus       300 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------  369 (514)
T 2gw1_A          300 DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP---------  369 (514)
T ss_dssp             CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST---------
T ss_pred             CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc---------
Confidence              244556666666667777777777777666542 22334455555555555555555555555544322         


Q ss_pred             HHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHh
Q 036290          590 VIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPS-------QATFVSVMSACS  662 (796)
Q Consensus       590 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~t~~~ll~~~~  662 (796)
                                              .+...+..+...+...|++++|...++++.+.  .|+       ...+..+...+.
T Consensus       370 ------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~l~~~~~  423 (514)
T 2gw1_A          370 ------------------------EAPEVPNFFAEILTDKNDFDKALKQYDLAIEL--ENKLDGIYVGIAPLVGKATLLT  423 (514)
T ss_dssp             ------------------------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHTSSSCSSCSHHHHHHHHHHH
T ss_pred             ------------------------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--hhccchHHHHHHHHHHHHHHHh
Confidence                                    23344555555555555566665555555542  221       225555666666


Q ss_pred             c---cCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 036290          663 H---KGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS  718 (796)
Q Consensus       663 ~---~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~  718 (796)
                      .   .|++++|...++++...   .|+ ..++..++.++.+.|++++|.+.++++ ...|+
T Consensus       424 ~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  481 (514)
T 2gw1_A          424 RNPTVENFIEATNLLEKASKL---DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART  481 (514)
T ss_dssp             TSCCTTHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred             hhhhcCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence            6   66666666666666532   333 555566666666666666666666665 33443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.85  E-value=7.2e-16  Score=174.35  Aligned_cols=523  Identities=13%  Similarity=0.073  Sum_probs=288.9

Q ss_pred             CCChhHhhHHHHHHHccCChhHHHHHhhccCC---------------CCc---------ee-------------HHHHHH
Q 036290          177 EKNPFVGCSVLNFYAKLGDVAAAERVFYSISS---------------DDV---------GC-------------WNAMIG  219 (796)
Q Consensus       177 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------------~~~---------~~-------------~~~li~  219 (796)
                      .-|+.+....|.+.++.|++.+.+++..+-.-               +|.         .-             ....|.
T Consensus       722 s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie  801 (1630)
T 1xi4_A          722 SQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIE  801 (1630)
T ss_pred             cCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCchhHHH
Confidence            44778888889999999999888888765321               111         00             123455


Q ss_pred             HHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHh-------------hccCCCchHHHHHHHHHHHhcCCCChHHHHH
Q 036290          220 GYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQG-------------CSLVADFDIGRQIHGLIIRSEVECSISIVNA  286 (796)
Q Consensus       220 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  286 (796)
                      .|++.-++..+-.+...+.+.+.  +......+|..             +-+.+++.....+++.-...| ..++.++|+
T Consensus       802 ~yv~~vnp~~~p~Vvg~lld~d~--~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hna  878 (1630)
T 1xi4_A          802 IYVQKVNPSRLPVVIGGLLDVDC--SEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNA  878 (1630)
T ss_pred             HHHhccCCcccchhhhhhhcCCC--CHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHH
Confidence            55555555555555555544322  22233333333             333334444444455555555 458889999


Q ss_pred             HHHhhhcCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHc----CCCCCcchHHHHHHHhcccCC
Q 036290          287 LIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILS----GSRPNHVTFSILLRQCGKLLD  362 (796)
Q Consensus       287 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~----g~~p~~~t~~~ll~~~~~~~~  362 (796)
                      |...|...+.-.+  +.+.+    |..-=..++.-||...++..|.-.|++-.-.    .+.-....|...-+-+.+..+
T Consensus       879 lakiyid~n~npe--~fL~~----n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d  952 (1630)
T 1xi4_A          879 LAKIYIDSNNNPE--RFLRE----NPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKD  952 (1630)
T ss_pred             HHHHHhccCCCHH--HHhhc----cCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcC
Confidence            9999987654222  22211    1111122334444444444443333320000    000011111111111111111


Q ss_pred             h-----------HHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCChHHHHHHHHhCCC-C-----ChhhHHHHHHHH
Q 036290          363 L-----------DLGLQLQCLALHCGF--LDEENVTSSLIYMFCRCGAVEMAHSVFDNVSY-K-----NITTWNELLSGY  423 (796)
Q Consensus       363 ~-----------~~a~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~  423 (796)
                      .           +.-.++.++.....+  ..++.--...+..|...|.+.+|.+++++..- +     +...-+.++.+.
T Consensus       953 ~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tA 1032 (1630)
T 1xi4_A          953 PELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTA 1032 (1630)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHH
Confidence            1           111122222222111  11222334556666677777777777776652 1     123444455555


Q ss_pred             HhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHH
Q 036290          424 CFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSF  503 (796)
Q Consensus       424 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  503 (796)
                      .+. +..+..+...+.... .      ..-+-..|...|.+++|..+|++..     -..   .++-..+...+++++|.
T Consensus      1033 Ika-D~~Rv~eyI~kLd~~-d------~~eIA~Iai~lglyEEAf~IYkKa~-----~~~---~A~~VLie~i~nldrAi 1096 (1630)
T 1xi4_A         1033 IKA-DRTRVMEYINRLDNY-D------APDIANIAISNELFEEAFAIFRKFD-----VNT---SAVQVLIEHIGNLDRAY 1096 (1630)
T ss_pred             HHh-ChhhHHHHHHHhhhc-c------HHHHHHHHHhCCCHHHHHHHHHHcC-----CHH---HHHHHHHHHHhhHHHHH
Confidence            554 445555555444311 1      1224445566677777777777641     111   11111222666777777


Q ss_pred             HHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCc
Q 036290          504 EFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTE  583 (796)
Q Consensus       504 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  583 (796)
                      ++.++..  +..+|..+..++...|++++|.+.|.+.      -|...|..++.+|.+.|+++++.+++...++..  ++
T Consensus      1097 E~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e 1166 (1630)
T 1xi4_A         1097 EFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RE 1166 (1630)
T ss_pred             HHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--cc
Confidence            7777653  4566777777777777777777777542      455666777777777777777777777666644  23


Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036290          584 VYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSH  663 (796)
Q Consensus       584 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~  663 (796)
                      +...+.++.+|.+.+++++...+.    ..++...|..+...|...|++++|..+|...         ..|..+...+.+
T Consensus      1167 ~~Idt~LafaYAKl~rleele~fI----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvk 1233 (1630)
T 1xi4_A         1167 SYVETELIFALAKTNRLAELEEFI----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVH 1233 (1630)
T ss_pred             ccccHHHHHHHHhhcCHHHHHHHH----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHH
Confidence            333334777777777777544333    3445556666777777777777777777764         257777777777


Q ss_pred             cCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 036290          664 KGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASE  743 (796)
Q Consensus       664 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  743 (796)
                      .|++++|.+.+++..       +..+|..+..++...|++..|......  +..++..+..++..|.+.|.+++|+.+++
T Consensus      1234 Lge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef~LA~~cgl~--Iiv~~deLeeli~yYe~~G~feEAI~LlE 1304 (1630)
T 1xi4_A         1234 LGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLH--IVVHADELEELINYYQDRGYFEELITMLE 1304 (1630)
T ss_pred             hCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHHHHHHHHHHh--hhcCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            777777777776553       346677777777777777777766654  33344455677777777777777777777


Q ss_pred             HHHccCCCCCcce
Q 036290          744 KLLLLLPKNDAAH  756 (796)
Q Consensus       744 ~~~~~~p~~~~~~  756 (796)
                      .++.++|.+...+
T Consensus      1305 ~aL~LeraH~gmf 1317 (1630)
T 1xi4_A         1305 AALGLERAHMGMF 1317 (1630)
T ss_pred             HHhccChhHhHHH
Confidence            7777777666666

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.85  E-value=9.8e-20  Score=196.85  Aligned_cols=309  Identities=12%  Similarity=0.080  Sum_probs=237.2

Q ss_pred             ChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHH
Q 036290          412 NITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIK  491 (796)
Q Consensus       412 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  491 (796)
                      +...|..+...+.+.|++++|+..|+++.+. .+.+..++..+..++...|+++.|...++.+.+.+ +.+.        
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~--------   94 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFT--------   94 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH--------
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcH--------
Confidence            4556777777888888888888888877764 22345566666666666666666666666666654 2333        


Q ss_pred             HHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH----HHHHHH------------
Q 036290          492 SYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDE----YILGTI------------  555 (796)
Q Consensus       492 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------  555 (796)
                                             ..|..+...|.+.|++++|...|+++.+.  .|+.    ..+..+            
T Consensus        95 -----------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~  149 (450)
T 2y4t_A           95 -----------------------AARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQ  149 (450)
T ss_dssp             -----------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHH
Confidence                                   34444555555555555555555555543  2322    233222            


Q ss_pred             HHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChH
Q 036290          556 LNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVS  633 (796)
Q Consensus       556 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~  633 (796)
                      ...+...|+++.|...++.+.+.... +...+..+..+|.+.|++++|.+.+++.+..  .+...|..+...|...|+++
T Consensus       150 a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  228 (450)
T 2y4t_A          150 ALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHE  228 (450)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence            34577899999999999999987654 7788999999999999999999999766653  47889999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCH-HHHHHH------------HHHHhccCCHHHHHHHHHHhHhhcCCCCC-----chHHHHHHH
Q 036290          634 EAMEIFDKMKLANLQPSQ-ATFVSV------------MSACSHKGLVDKGCLLFKSMDSQYGMQPS-----PDCYGCLVD  695 (796)
Q Consensus       634 ~A~~~~~~m~~~g~~p~~-~t~~~l------------l~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~  695 (796)
                      +|...|+++.+  ..|+. ..+..+            ...|.+.|++++|..+|+++...   .|+     ...+..++.
T Consensus       229 ~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~  303 (450)
T 2y4t_A          229 LSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICH  303 (450)
T ss_dssp             HHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHH
Confidence            99999999998  56644 344444            78899999999999999999844   555     347888999


Q ss_pred             HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290          696 MLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK  761 (796)
Q Consensus       696 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  761 (796)
                      ++.+.|++++|.+.++++ ...| +..+|..+..+|...|++++|...++++++++|+++.++..|+.
T Consensus       304 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  371 (450)
T 2y4t_A          304 CFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEK  371 (450)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence            999999999999999997 4445 67899999999999999999999999999999999998887773

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.85  E-value=3.8e-19  Score=197.06  Aligned_cols=431  Identities=12%  Similarity=-0.005  Sum_probs=300.6

Q ss_pred             chHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 036290          313 ISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMF  392 (796)
Q Consensus       313 ~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~  392 (796)
                      ..|..+...+.+.|++++|++.|+++.+.. +.+...+..+..++.+.|++++|.+.++.+.+.. +.+...+..+..++
T Consensus        26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~  103 (537)
T 3fp2_A           26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN  103 (537)
T ss_dssp             HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence            345666667777777777777777776653 2245566677777777777888877777777664 44566777778888


Q ss_pred             HhcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhc------CCcccHHHHHHHHHHhcccCcHHH
Q 036290          393 CRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWES------GVEVNGCTFFYVVETCCRSENQQM  466 (796)
Q Consensus       393 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~  466 (796)
                      ...|++++|...|+.+. .+....+..+..+...+...++...++++...      ...|+.......+.    ..+.+.
T Consensus       104 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  178 (537)
T 3fp2_A          104 ESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG----IFDSHL  178 (537)
T ss_dssp             HHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH----TSCHHH
T ss_pred             HHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH----hcChHH
Confidence            88888888888886443 22222233344455555566777777777543      23344444433332    222222


Q ss_pred             HHHHHHHHHHhCCCCCch---hHhHHHHHHHh--------cCCcchHHHHHhcCCC--CC--------HhhHHHHHHHHH
Q 036290          467 VGQIHGAIIKTGFSSCGY---ICSSLIKSYVN--------FGQLDNSFEFSNGAER--LD--------MASWGAMMSALV  525 (796)
Q Consensus       467 a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~--------~g~~~~A~~~~~~~~~--~~--------~~~~~~li~~~~  525 (796)
                      +...+..    ....+..   ....+...+..        .|++++|..+++.+.+  |+        ..+|..+...+.
T Consensus       179 ~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~  254 (537)
T 3fp2_A          179 EVSSVNT----SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHF  254 (537)
T ss_dssp             HHHTSCC----CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhh----ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHH
Confidence            2111111    1111111   22222222222        2467777777777665  22        224666677888


Q ss_pred             HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 036290          526 HQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARM  605 (796)
Q Consensus       526 ~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  605 (796)
                      ..|++++|...+++..+.  .|+...+..+...+...|+++.|.+.++.+.+.... +..++..+...|...|++++|..
T Consensus       255 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~  331 (537)
T 3fp2_A          255 LKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKE  331 (537)
T ss_dssp             HTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHH
Confidence            899999999999999876  566888888999999999999999999999887654 67789999999999999999999


Q ss_pred             HHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcC
Q 036290          606 AFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYG  682 (796)
Q Consensus       606 ~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~  682 (796)
                      .+++.+..  .+...|..+...+...|++++|...++++.+.  .| +...+..+...+...|++++|...++++.+...
T Consensus       332 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  409 (537)
T 3fp2_A          332 DFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE  409 (537)
T ss_dssp             HHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence            99766543  36788999999999999999999999999984  45 566888899999999999999999999875421


Q ss_pred             CCCC----chHHHHHHHHHHhc----------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 036290          683 MQPS----PDCYGCLVDMLSRN----------GYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLL  746 (796)
Q Consensus       683 ~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  746 (796)
                      -.++    ...+..+..++.+.          |++++|.+.++++ ...| +..+|..+..++.+.|++++|...+++++
T Consensus       410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  489 (537)
T 3fp2_A          410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA  489 (537)
T ss_dssp             HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            1121    22344556778888          9999999999988 3344 56789999999999999999999999999


Q ss_pred             ccCCCCCcceEEe
Q 036290          747 LLLPKNDAAHVLL  759 (796)
Q Consensus       747 ~~~p~~~~~~~~l  759 (796)
                      +++|+++.....+
T Consensus       490 ~~~~~~~~~~~~~  502 (537)
T 3fp2_A          490 ILARTMDEKLQAT  502 (537)
T ss_dssp             HHC--CHHHHHHH
T ss_pred             HhCCCcHHHHHHH
Confidence            9999887765433

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.84  E-value=6.7e-15  Score=166.61  Aligned_cols=522  Identities=10%  Similarity=0.039  Sum_probs=310.2

Q ss_pred             HHHHHHHHHhcC--CCChhHhhHHHHHHHccCChhHHHHHhhccCC-C-----CceeHHHHHHHHHhCCCchHHHHHHHH
Q 036290          165 YSIHCFALKIRI--EKNPFVGCSVLNFYAKLGDVAAAERVFYSISS-D-----DVGCWNAMIGGYAHCGYGFEALNVVSS  236 (796)
Q Consensus       165 ~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~  236 (796)
                      +++.++.....+  ..++.-....+..|...|.+.+|.++++++.- +     +....+.++.+..+. +..+..++.+.
T Consensus       968 R~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~k 1046 (1630)
T 1xi4_A          968 RPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINR 1046 (1630)
T ss_pred             HHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHH
Confidence            344444444332  23444455667777788888888888887652 2     223455566666555 45566666555


Q ss_pred             HHHCCCCCCHhhHHHHHHhhccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCCCCcchHH
Q 036290          237 MLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWN  316 (796)
Q Consensus       237 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~  316 (796)
                      ....    +   ...+-..|...|.+++|..+|+...     ......+.++   -..+++++|.++.++...  ..+|.
T Consensus      1047 Ld~~----d---~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn~--p~vWs 1109 (1630)
T 1xi4_A         1047 LDNY----D---APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCNE--PAVWS 1109 (1630)
T ss_pred             hhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcCC--HHHHH
Confidence            5321    1   2234555667778888888877652     1111112222   256777888877776643  45677


Q ss_pred             HHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 036290          317 TLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCG  396 (796)
Q Consensus       317 ~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g  396 (796)
                      .+..++...|++++|++.|.+.      -|...|..++.++.+.|+++++.+.+....+..  ++..+.+.++.+|++.+
T Consensus      1110 qLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A         1110 QLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTN 1181 (1630)
T ss_pred             HHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhc
Confidence            7788888888888888887552      455667778888888888888888887766654  33333445777788877


Q ss_pred             ChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Q 036290          397 AVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIK  476 (796)
Q Consensus       397 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~  476 (796)
                      ++++...+.   ..++...|..+...|...|++++|..+|...         ..|..+...+.+.|+++.|.+.++..  
T Consensus      1182 rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-- 1247 (1630)
T 1xi4_A         1182 RLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-- 1247 (1630)
T ss_pred             CHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--
Confidence            777544443   3445566667777777888888888888774         36777788888888888888777765  


Q ss_pred             hCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036290          477 TGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTIL  556 (796)
Q Consensus       477 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll  556 (796)
                          .+..+|..+..++...|++..|...... ...++..+..++..|.+.|.+++|+.+++...... +-....|.-+.
T Consensus      1248 ----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELa 1321 (1630)
T 1xi4_A         1248 ----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 1321 (1630)
T ss_pred             ----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHH
Confidence                3456777777777777777777776654 33455566677777888888888888886654322 12223343333


Q ss_pred             HHHhc--cCchHHHHHHHHHHHHhCCCC------chhHHHHHHHHHHhcCCHHHHHHHHhcc-------------C-CCC
Q 036290          557 NSCAA--IGAYQRTKSIHPFVIKLGFNT------EVYVASAVIDAYAKCGDIKGARMAFDQS-------------F-NSN  614 (796)
Q Consensus       557 ~~~~~--~~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~-------------~-~~~  614 (796)
                      ..+++  .++..+..+.|..  +.++++      +...|..++..|.+.|+++.|....-+.             + +..
T Consensus      1322 iLyaKy~peklmEhlk~f~~--rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~ 1399 (1630)
T 1xi4_A         1322 ILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVA 1399 (1630)
T ss_pred             HHHHhCCHHHHHHHHHHHHH--hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccc
Confidence            33333  3333333333332  122222      4566777888888888888877333221             1 123


Q ss_pred             ChhHHHHHHHHHHhcC---------------ChHHHHHHHHHH-------------HHCCCCCCHHHHHHHHHHHhccCC
Q 036290          615 DVIVYNTLIMAYAHHG---------------LVSEAMEIFDKM-------------KLANLQPSQATFVSVMSACSHKGL  666 (796)
Q Consensus       615 ~~~~~~~li~~~~~~g---------------~~~~A~~~~~~m-------------~~~g~~p~~~t~~~ll~~~~~~g~  666 (796)
                      ++..|...+..|...+               +.+++.++|.+.             ...+..   ..=..+...+....+
T Consensus      1400 n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~~l~lik~yl~~vq~~n~~---~Vneal~el~ieeed 1476 (1630)
T 1xi4_A         1400 NVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNK---SVNESLNNLFITEED 1476 (1630)
T ss_pred             cHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHcCChHHhHHHHHHHHHhcch---hhhHHHHHHhcCccc
Confidence            6666666666666555               566665555421             111111   111122222233333


Q ss_pred             HHHHH------------HHHHHhHhhcCCCCCchHHHHHH-HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036290          667 VDKGC------------LLFKSMDSQYGMQPSPDCYGCLV-DMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHG  733 (796)
Q Consensus       667 ~~~A~------------~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g  733 (796)
                      ++.-.            .+.+++.     +.+..-+..+. .+|.+.|+|..|.+++.+.+      .|...+.+..+.|
T Consensus      1477 ~~~Lr~si~~~~nfd~~~La~~le-----kheLl~frrIAa~ly~~n~~~~~ai~l~k~d~------l~~dAm~~a~~S~ 1545 (1630)
T 1xi4_A         1477 YQALRTSIDAYDNFDNISLAQRLE-----KHELIEFRRIAAYLFKGNNRWKQSVELCKKDS------LYKDAMQYASESK 1545 (1630)
T ss_pred             hHHHHHHHhhccCcCHHHHHHHhh-----hhhHHHHHHHHHHHHHhcCcHHHHHHHHHhcc------CHHHHHHHHHHcC
Confidence            32111            1111111     11112223333 44555699999999999876      3556677778888


Q ss_pred             ChHHHHHHHHHHHcc
Q 036290          734 NKELGEWASEKLLLL  748 (796)
Q Consensus       734 ~~~~A~~~~~~~~~~  748 (796)
                      |.+.+++++.--.+.
T Consensus      1546 d~e~~e~ll~~F~~~ 1560 (1630)
T 1xi4_A         1546 DTELAEELLQWFLQE 1560 (1630)
T ss_pred             CHHHHHHHHHHHHhc
Confidence            888887777665554

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.81  E-value=1.6e-17  Score=184.02  Aligned_cols=425  Identities=9%  Similarity=-0.024  Sum_probs=193.5

Q ss_pred             eHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhh
Q 036290          213 CWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYI  292 (796)
Q Consensus       213 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  292 (796)
                      .|..+...+.+.|++++|++.|+.+.+.. +.+...+..+...+...|++++|.+.++.+.+.+ +.+...+..+...+.
T Consensus        27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~  104 (537)
T 3fp2_A           27 QLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE  104 (537)
T ss_dssp             HHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence            34555566667777777777777766543 2345566666666666666666666666666554 234556666666677


Q ss_pred             cCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHH
Q 036290          293 KSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCL  372 (796)
Q Consensus       293 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~  372 (796)
                      ..|++++|...|+.+.. +....+..+..+...+....|...++++....  |+..                        
T Consensus       105 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~~------------------------  157 (537)
T 3fp2_A          105 SLGNFTDAMFDLSVLSL-NGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EGRG------------------------  157 (537)
T ss_dssp             HHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC--------------------------------
T ss_pred             HcCCHHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC--cccc------------------------
Confidence            77777777777754321 11122222333444444556666666654321  0000                        


Q ss_pred             HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCChh---hHHHHHHHHHh--------cCCchHHHHHHHHHHh
Q 036290          373 ALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNIT---TWNELLSGYCF--------NCCDADVLKTFCNIWE  441 (796)
Q Consensus       373 ~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~--------~g~~~~a~~~~~~m~~  441 (796)
                         ....|+.    ..+..+....+.+.+...+......+..   ....+...+..        .|++++|..+++++.+
T Consensus       158 ---~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~  230 (537)
T 3fp2_A          158 ---SQVLPSN----TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLS  230 (537)
T ss_dssp             ----CCCCCH----HHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ---ccccchH----hHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence               0001111    1122233333444444433333322211   11222211111        1345555555555554


Q ss_pred             cCCccc--------HHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCC
Q 036290          442 SGVEVN--------GCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLD  513 (796)
Q Consensus       442 ~g~~p~--------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  513 (796)
                      .  .|+        ..++..+...+...|+++.|...++.+.+..  |+...+..+...+...                 
T Consensus       231 ~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~-----------------  289 (537)
T 3fp2_A          231 A--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADK-----------------  289 (537)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCS-----------------
T ss_pred             H--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHh-----------------
Confidence            3  222        1122333333344444444444444444432  1133333333333333                 


Q ss_pred             HhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 036290          514 MASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDA  593 (796)
Q Consensus       514 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  593 (796)
                                    |++++|...+++..+.. +.+..++..+...+...|+++.|.+.++.+.+.... +...+..+...
T Consensus       290 --------------~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~  353 (537)
T 3fp2_A          290 --------------ENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACL  353 (537)
T ss_dssp             --------------SCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHH
T ss_pred             --------------cCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence                          34444444444333321 122333344444444444444444444444443222 23344444555


Q ss_pred             HHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHhcc--
Q 036290          594 YAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQ-----PSQATFVSVMSACSHK--  664 (796)
Q Consensus       594 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~t~~~ll~~~~~~--  664 (796)
                      |...|++++|...+++.+..  .+...+..+...+...|++++|.+.++++.+....     .....+......+...  
T Consensus       354 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  433 (537)
T 3fp2_A          354 LYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSS  433 (537)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhh
Confidence            55555555555555333322  23445555555556666666666666555442100     0111233333444444  


Q ss_pred             --------CCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          665 --------GLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       665 --------g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                              |++++|...++++.+.   .|+ ...+..+..+|.+.|++++|.+.+++.
T Consensus       434 ~~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  488 (537)
T 3fp2_A          434 QDPTQLDEEKFNAAIKLLTKACEL---DPRSEQAKIGLAQLKLQMEKIDEAIELFEDS  488 (537)
T ss_dssp             C----CCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccchhhhHhHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence                    6666666666666532   333 555666666666666666666666665

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.78  E-value=8.2e-17  Score=167.86  Aligned_cols=308  Identities=11%  Similarity=0.056  Sum_probs=219.9

Q ss_pred             hhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHH
Q 036290          413 ITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKS  492 (796)
Q Consensus       413 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  492 (796)
                      +..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|+++.|...++.+.+.. +.+...+..+.. 
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~-   79 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH-   79 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH-
Confidence            4456667777777788888888877776642 2234555556666666666666666666666553 333344444444 


Q ss_pred             HHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC----CHHHHHH------------HH
Q 036290          493 YVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKP----DEYILGT------------IL  556 (796)
Q Consensus       493 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p----~~~t~~~------------ll  556 (796)
                                                    .+...|++++|...|++..+.  .|    +...+..            +.
T Consensus        80 ------------------------------~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a  127 (359)
T 3ieg_A           80 ------------------------------LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQA  127 (359)
T ss_dssp             ------------------------------HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------------------------HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHH
Confidence                                          444455555555555554433  23    1122222            24


Q ss_pred             HHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHH
Q 036290          557 NSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSE  634 (796)
Q Consensus       557 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~  634 (796)
                      ..+...|+++.|.+.++.+.+.... +...+..+...+...|++++|...+++.+..  .+...+..+...+...|++++
T Consensus       128 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  206 (359)
T 3ieg_A          128 LDAFDGADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHEL  206 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            5667778888888888887776543 5677888888888899999999888766654  477888899999999999999


Q ss_pred             HHHHHHHHHHCCCCCCH-HHHH------------HHHHHHhccCCHHHHHHHHHHhHhhcCCCCCc-----hHHHHHHHH
Q 036290          635 AMEIFDKMKLANLQPSQ-ATFV------------SVMSACSHKGLVDKGCLLFKSMDSQYGMQPSP-----DCYGCLVDM  696 (796)
Q Consensus       635 A~~~~~~m~~~g~~p~~-~t~~------------~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-----~~~~~l~~~  696 (796)
                      |...+++..+  ..|+. ..+.            .+...+.+.|++++|...++++...   .|+.     ..+..+..+
T Consensus       207 A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~  281 (359)
T 3ieg_A          207 SLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHC  281 (359)
T ss_dssp             HHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh--hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHH
Confidence            9999999988  45533 3332            2256688899999999999999854   3542     335568899


Q ss_pred             HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290          697 LSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK  761 (796)
Q Consensus       697 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  761 (796)
                      +.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|+++.++..|..
T Consensus       282 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~  348 (359)
T 3ieg_A          282 FSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEK  348 (359)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence            99999999999999988 3345 67889999999999999999999999999999999888776655

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.75  E-value=1.8e-16  Score=161.31  Aligned_cols=376  Identities=12%  Similarity=0.083  Sum_probs=150.6

Q ss_pred             hcCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHH
Q 036290          292 IKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQC  371 (796)
Q Consensus       292 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~  371 (796)
                      -+.|++++|.++++++..|+  +|..+..++.+.|++++|++.|.+      .+|..+|..++.++...|++++|..++.
T Consensus        14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~   85 (449)
T 1b89_A           14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ   85 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            36688999999999996664  899999999999999999999965      3688899999999999999999999887


Q ss_pred             HHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHH
Q 036290          372 LALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTF  451 (796)
Q Consensus       372 ~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~  451 (796)
                      ...+.  .++..+.+.++.+|.+.|+++++.++++.   |+..+|+.+...|...|.+++|...|..+            
T Consensus        86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------------  148 (449)
T 1b89_A           86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV------------  148 (449)
T ss_dssp             -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT------------
T ss_pred             HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh------------
Confidence            77764  45577888999999999999998887753   66668888888888888888888888755            


Q ss_pred             HHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChh
Q 036290          452 FYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNH  531 (796)
Q Consensus       452 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~  531 (796)
                                                      ..|..++.++.+.|++++|.+.+.++  .++.+|..++.+|...|+++
T Consensus       149 --------------------------------~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~  194 (449)
T 1b89_A          149 --------------------------------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFR  194 (449)
T ss_dssp             --------------------------------TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHH
T ss_pred             --------------------------------hhHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHH
Confidence                                            13455555555666666666655555  25666667777777777777


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--cCCHHHHHHHHhc
Q 036290          532 EAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAK--CGDIKGARMAFDQ  609 (796)
Q Consensus       532 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~  609 (796)
                      .|......     +...+.-...++..|.+.|.++++..+++...... +-....|+-+.-+|++  .+++.+.++.|..
T Consensus       195 lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~  268 (449)
T 1b89_A          195 LAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS  268 (449)
T ss_dssp             HHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred             HHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            66443332     11222224456666777777777777776665544 3355666666666654  4567777777755


Q ss_pred             cCCCC-------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhc
Q 036290          610 SFNSN-------DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLAN-LQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQY  681 (796)
Q Consensus       610 ~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~  681 (796)
                      .+.-|       +...|.-+...|.+.++++.|..+   |.+.- ..-+...|.-++.--....-+-+|..++-   .. 
T Consensus       269 ~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl---~~-  341 (449)
T 1b89_A          269 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL---EF-  341 (449)
T ss_dssp             TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH---HH-
T ss_pred             HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH---hc-
Confidence            55443       567888999999999999988663   44421 11123333333322111111223333321   11 


Q ss_pred             CCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 036290          682 GMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-------------PFQPSPTVYRSLLSGCRIHGNKELGEWASE  743 (796)
Q Consensus       682 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  743 (796)
                        .  +..++.|+.++...=+...+.+++++.             +-..+..+-.++-..+....|++.-+...+
T Consensus       342 --~--p~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~yl~~v~~~n~~~vnealn~l~ieeed~~~lr~si~  412 (449)
T 1b89_A          342 --K--PLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSID  412 (449)
T ss_dssp             --C--GGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             --C--HHHHHHHHHHHHhccCcHHHHHHHHHcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence              1  223444555554444555555555544             333344555566666777777776554444

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.74  E-value=1.8e-15  Score=157.66  Aligned_cols=322  Identities=11%  Similarity=0.028  Sum_probs=234.7

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHHhCCC---CChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHH
Q 036290          381 EENVTSSLIYMFCRCGAVEMAHSVFDNVSY---KNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVET  457 (796)
Q Consensus       381 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~  457 (796)
                      +...+..+...+...|++++|...|+++.+   .+..+|..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~   80 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL   80 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence            456778888999999999999999998763   457789999999999999999999999998753 2356788888899


Q ss_pred             hcccCcHHHHHHHHHHHHHhCCC---CCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHH
Q 036290          458 CCRSENQQMVGQIHGAIIKTGFS---SCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAV  534 (796)
Q Consensus       458 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~  534 (796)
                      +...|++++|...++.+.+.. +   .+...+..+...+.                   ...+..+...+...|++++|.
T Consensus        81 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-------------------~~~~~~~a~~~~~~~~~~~A~  140 (359)
T 3ieg_A           81 LLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADE-------------------MQRLRSQALDAFDGADYTAAI  140 (359)
T ss_dssp             HHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHH-------------------HHHHHHHHHHHHHccCHHHHH
Confidence            999999999999999998764 2   23333433322111                   112233445666677777777


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-
Q 036290          535 TIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-  613 (796)
Q Consensus       535 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-  613 (796)
                      ..++++.+.. +.+...+..+...+...|+++.|...++.+.+.... +...+..+...|...|++++|...++..+.. 
T Consensus       141 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  218 (359)
T 3ieg_A          141 TFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD  218 (359)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            7777766553 345566666666777777777777777777665433 5566777777777777777777777554432 


Q ss_pred             C-ChhHHH------------HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHhccCCHHHHHHHHH
Q 036290          614 N-DVIVYN------------TLIMAYAHHGLVSEAMEIFDKMKLANLQPSQA-----TFVSVMSACSHKGLVDKGCLLFK  675 (796)
Q Consensus       614 ~-~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----t~~~ll~~~~~~g~~~~A~~~~~  675 (796)
                      | +...+.            .+...+...|++++|...++++.+  ..|+..     .+..+...+...|++++|...++
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  296 (359)
T 3ieg_A          219 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSVAEYTVRSKERICHCFSKDEKPVEAIRICS  296 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            2 223222            336668899999999999999988  446432     24456678899999999999999


Q ss_pred             HhHhhcCCCC-CchHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 036290          676 SMDSQYGMQP-SPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS-PTVYRSLLSGCR  730 (796)
Q Consensus       676 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~  730 (796)
                      ++.+.   .| ++..+..++.++.+.|++++|.+.++++ ...|+ ...+..+..+..
T Consensus       297 ~~~~~---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  351 (359)
T 3ieg_A          297 EVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR  351 (359)
T ss_dssp             HHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHh---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            99843   56 4788999999999999999999999998 66675 455666655543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.74  E-value=2.1e-16  Score=162.67  Aligned_cols=278  Identities=11%  Similarity=0.009  Sum_probs=197.7

Q ss_pred             CCCchhHhHHHHHHHhcCCcchHHHHHhcCCC---CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036290          480 SSCGYICSSLIKSYVNFGQLDNSFEFSNGAER---LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTIL  556 (796)
Q Consensus       480 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll  556 (796)
                      +.+...+..+...+...|++++|.++|+.+.+   .+...+..++..+...|++++|...++++.+.. +.+...+..+.
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~   97 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG   97 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence            45556666666777777777777777666543   234455566677777777788887777776652 33455666677


Q ss_pred             HHHhccC-chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChH
Q 036290          557 NSCAAIG-AYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVS  633 (796)
Q Consensus       557 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~  633 (796)
                      ..+...| +++.|.+.++...+.... +...+..+...+...|++++|.+.+++.+..  .+...+..+...|...|+++
T Consensus        98 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~  176 (330)
T 3hym_B           98 CYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK  176 (330)
T ss_dssp             HHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence            7777777 777788877777765433 4566777778888888888888887655442  34566667778888888888


Q ss_pred             HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcC-------CCCCchHHHHHHHHHHhcCChHH
Q 036290          634 EAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYG-------MQPSPDCYGCLVDMLSRNGYLED  705 (796)
Q Consensus       634 ~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~  705 (796)
                      +|.+.+++..+  ..| +...+..+...+...|++++|...++++.+...       ......++..++.++.+.|++++
T Consensus       177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  254 (330)
T 3hym_B          177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE  254 (330)
T ss_dssp             HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence            88888888877  445 556777777888888888888888888774321       12235677888888888888888


Q ss_pred             HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290          706 AKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK  761 (796)
Q Consensus       706 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  761 (796)
                      |.+.+++. ...| +...|..+..++...|++++|...++++++++|+++.++..|+.
T Consensus       255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  312 (330)
T 3hym_B          255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH  312 (330)
T ss_dssp             HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHH
T ss_pred             HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHH
Confidence            88888877 3333 45677888888888888888888888888888888877766643

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.73  E-value=2.6e-15  Score=152.75  Aligned_cols=223  Identities=9%  Similarity=0.065  Sum_probs=79.6

Q ss_pred             HccCChhHHHHHhhccCCCCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHHHHHHH
Q 036290          191 AKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHG  270 (796)
Q Consensus       191 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  270 (796)
                      -+.|++++|.+.++++..|+  .|..+..++.+.|++++|++.|.+.      +|..+|..++.++...|++++|...+.
T Consensus        14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~   85 (449)
T 1b89_A           14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ   85 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            36788999999999996664  8999999999999999999999753      678899999999999999999999887


Q ss_pred             HHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchH
Q 036290          271 LIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTF  350 (796)
Q Consensus       271 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~  350 (796)
                      ...+.  .+++.+.+.|+.+|.+.|+++++.++++.   |+..+|+.+...|...|.+++|...|..+         ..|
T Consensus        86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~  151 (449)
T 1b89_A           86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF  151 (449)
T ss_dssp             -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred             HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence            77664  45577889999999999999998888864   67779999999999999999999999876         477


Q ss_pred             HHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCch
Q 036290          351 SILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDA  430 (796)
Q Consensus       351 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~  430 (796)
                      ..+..++.+.|++++|.+.+..+      .++.+|..++.+|...|+++.|......+. ....-...++..|.+.|+++
T Consensus       152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e  224 (449)
T 1b89_A          152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE  224 (449)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence            77777777777777777777766      256777777777777777777766555443 33333445666677777777


Q ss_pred             HHHHHHHHHHhc
Q 036290          431 DVLKTFCNIWES  442 (796)
Q Consensus       431 ~a~~~~~~m~~~  442 (796)
                      +|..+++.....
T Consensus       225 Eai~lLe~aL~l  236 (449)
T 1b89_A          225 ELITMLEAALGL  236 (449)
T ss_dssp             HHHHHHHHHTTS
T ss_pred             HHHHHHHHHhCC
Confidence            777777666543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.72  E-value=2.6e-15  Score=154.39  Aligned_cols=287  Identities=13%  Similarity=0.030  Sum_probs=192.4

Q ss_pred             ChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHH
Q 036290          412 NITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIK  491 (796)
Q Consensus       412 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  491 (796)
                      +...+..+...+...|++++|..+++++.... +.+...+..+...+...|++++|..+++.+.+.. +.          
T Consensus        21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~----------   88 (330)
T 3hym_B           21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PS----------   88 (330)
T ss_dssp             CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT----------
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cC----------
Confidence            44455556666666666666666666665532 1122223333344444445555555544444432 22          


Q ss_pred             HHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHH
Q 036290          492 SYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQG-HNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKS  570 (796)
Q Consensus       492 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~  570 (796)
                                           +...|..+...+...| ++++|...|++..+.. +.+...+..+...+...|+++.|.+
T Consensus        89 ---------------------~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~  146 (330)
T 3hym_B           89 ---------------------NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMA  146 (330)
T ss_dssp             ---------------------STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHH
T ss_pred             ---------------------CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHH
Confidence                                 3445555556666666 6666666666665442 2234556666666677777777777


Q ss_pred             HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-
Q 036290          571 IHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANL-  647 (796)
Q Consensus       571 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-  647 (796)
                      .++.+.+.... +...+..+...|...|++++|.+.+++.+..  .+...+..+...+...|++++|...+++..+... 
T Consensus       147 ~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  225 (330)
T 3hym_B          147 AYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA  225 (330)
T ss_dssp             HHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhh
Confidence            77766665443 4455666778888888888888888666554  3677888888899999999999999988876311 


Q ss_pred             -------CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-
Q 036290          648 -------QPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-  717 (796)
Q Consensus       648 -------~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-  717 (796)
                             +.+..++..+...+...|++++|...++++.+.   .|+ ...+..+..++.+.|++++|.+.++++ ...| 
T Consensus       226 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  302 (330)
T 3hym_B          226 IGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL---IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD  302 (330)
T ss_dssp             TSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred             ccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence                   224568888999999999999999999999844   454 788899999999999999999999998 5666 


Q ss_pred             CHHHHHHHHHHH-HhcCChH
Q 036290          718 SPTVYRSLLSGC-RIHGNKE  736 (796)
Q Consensus       718 ~~~~~~~l~~~~-~~~g~~~  736 (796)
                      +...+..+..++ ...|+.+
T Consensus       303 ~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          303 DTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             CHHHHHHHHHHHHTTTTC--
T ss_pred             chHHHHHHHHHHHHHhCchh
Confidence            556777777777 4556544

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.70  E-value=5.8e-14  Score=152.79  Aligned_cols=348  Identities=9%  Similarity=-0.065  Sum_probs=213.4

Q ss_pred             cCChHHHHHHHHhCCC-CChhhHHHHHHHHHh----cCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcc----cCcHH
Q 036290          395 CGAVEMAHSVFDNVSY-KNITTWNELLSGYCF----NCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCR----SENQQ  465 (796)
Q Consensus       395 ~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~  465 (796)
                      .+++++|...|+...+ .+...+..+...|..    .++.++|..+|++..+.|   +...+..+-..+..    .++++
T Consensus        56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~  132 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA  132 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence            3444444444443322 233344444444444    444555555555544433   22223333333333    44555


Q ss_pred             HHHHHHHHHHHhCCCCCchhHhHHHHHHHh----cCCcchHHHHHhcCCC-CCHhhHHHHHHHHHH----cCChhHHHHH
Q 036290          466 MVGQIHGAIIKTGFSSCGYICSSLIKSYVN----FGQLDNSFEFSNGAER-LDMASWGAMMSALVH----QGHNHEAVTI  536 (796)
Q Consensus       466 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~  536 (796)
                      .|...++...+.|   ++..+..|...|..    .++.++|.+.|++..+ .+...+..+...|..    .++.++|...
T Consensus       133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~  209 (490)
T 2xm6_A          133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQW  209 (490)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence            5555555555443   33444445555554    4556666666554433 345556666666666    6777777777


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHhc----cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHh
Q 036290          537 FHSLVEAGEKPDEYILGTILNSCAA----IGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAK----CGDIKGARMAFD  608 (796)
Q Consensus       537 ~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~  608 (796)
                      |++..+.|   +...+..+...+..    .++.+.|..+++...+.|   +...+..+..+|..    .++.++|.+.|+
T Consensus       210 ~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~  283 (490)
T 2xm6_A          210 YRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYR  283 (490)
T ss_dssp             HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred             HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence            77776654   34455555555553    667777777777776654   34555566666666    778888888887


Q ss_pred             ccCCCCChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHhHhh
Q 036290          609 QSFNSNDVIVYNTLIMAYAHH-----GLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKG---LVDKGCLLFKSMDSQ  680 (796)
Q Consensus       609 ~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~A~~~~~~~~~~  680 (796)
                      ......+...+..+...|...     +++++|...|++..+.|   +...+..+...|...|   ++++|.++|++..+.
T Consensus       284 ~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~  360 (490)
T 2xm6_A          284 KSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK  360 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence            776667777777777777776     78888888888887754   3345555665665545   778888888887743


Q ss_pred             cCCCCCchHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCC-
Q 036290          681 YGMQPSPDCYGCLVDMLSR----NGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRI----HGNKELGEWASEKLLLLLPK-  751 (796)
Q Consensus       681 ~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~-  751 (796)
                          .++..+..|..+|..    .+++++|.+++++.-...++..+..|...|..    .+|.++|...++++.+.+|+ 
T Consensus       361 ----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~  436 (490)
T 2xm6_A          361 ----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNL  436 (490)
T ss_dssp             ----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCH
T ss_pred             ----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCC
Confidence                356677778888877    78888888888877323456677777777776    78888888888888888743 


Q ss_pred             --CCcceEEecC
Q 036290          752 --NDAAHVLLSK  761 (796)
Q Consensus       752 --~~~~~~~l~~  761 (796)
                        ++.+...|+.
T Consensus       437 ~~~~~a~~~l~~  448 (490)
T 2xm6_A          437 FGTENRNITEKK  448 (490)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHh
Confidence              5555555544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.69  E-value=2.3e-15  Score=150.62  Aligned_cols=255  Identities=9%  Similarity=0.005  Sum_probs=196.5

Q ss_pred             HHHhcCCcchHHHHHhcCCCCCH----hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHH
Q 036290          492 SYVNFGQLDNSFEFSNGAERLDM----ASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQR  567 (796)
Q Consensus       492 ~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~  567 (796)
                      -....|++..|+..++.....++    .....+..+|...|+++.|+..++.    .-.|+..++..+...+...++.+.
T Consensus         8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~   83 (291)
T 3mkr_A            8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA   83 (291)
T ss_dssp             HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence            34456677777777666544222    2334456777888888888776644    135666777777788888888888


Q ss_pred             HHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 036290          568 TKSIHPFVIKLGFNT-EVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLAN  646 (796)
Q Consensus       568 a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  646 (796)
                      |.+.++.+...+..| +...+..+...|...|++++|++.+++   ..+...+..++..+.+.|++++|.+.++++.+. 
T Consensus        84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-  159 (291)
T 3mkr_A           84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-  159 (291)
T ss_dssp             HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence            888888887776544 455666777899999999999999955   467889999999999999999999999999984 


Q ss_pred             CCCCHHHHH---HHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHH
Q 036290          647 LQPSQATFV---SVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTV  721 (796)
Q Consensus       647 ~~p~~~t~~---~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~  721 (796)
                       .|+.....   ..+..+...|++++|..+|+++.+.  .+.++..++.+..++.+.|++++|.+.+++. ...| ++.+
T Consensus       160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~  236 (291)
T 3mkr_A          160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET  236 (291)
T ss_dssp             -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence             57643221   2234445569999999999999955  2345888999999999999999999999997 4455 6678


Q ss_pred             HHHHHHHHHhcCChHH-HHHHHHHHHccCCCCCcceE
Q 036290          722 YRSLLSGCRIHGNKEL-GEWASEKLLLLLPKNDAAHV  757 (796)
Q Consensus       722 ~~~l~~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~  757 (796)
                      |..++..+...|+..+ +.++++++++++|+++.+..
T Consensus       237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d  273 (291)
T 3mkr_A          237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE  273 (291)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence            9999999999999875 67999999999999987643

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.67  E-value=1.1e-13  Score=152.41  Aligned_cols=408  Identities=9%  Similarity=0.032  Sum_probs=260.2

Q ss_pred             CcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCC-cchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 036290          311 DVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPN-HVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLI  389 (796)
Q Consensus       311 ~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll  389 (796)
                      +...|..++. +.+.|++++|..+|+++.+.  .|+ ...|...+..+.+.|+++.|..+|+.+.+..  |+...|...+
T Consensus        12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~   86 (530)
T 2ooe_A           12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL   86 (530)
T ss_dssp             CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred             CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence            6667887777 46778888888888888754  343 3456666677777777777777777776653  4555555555


Q ss_pred             HHH-HhcCChHHHHH----HHHhCC-----C-CChhhHHHHHHHHHh---------cCCchHHHHHHHHHHhcCCcccHH
Q 036290          390 YMF-CRCGAVEMAHS----VFDNVS-----Y-KNITTWNELLSGYCF---------NCCDADVLKTFCNIWESGVEVNGC  449 (796)
Q Consensus       390 ~~~-~~~g~~~~A~~----~~~~~~-----~-~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~g~~p~~~  449 (796)
                      ... ...|+.+.|.+    +|+...     . ++...|...+....+         .|+++.|..+|++.......+...
T Consensus        87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~  166 (530)
T 2ooe_A           87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ  166 (530)
T ss_dssp             HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred             HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence            422 33455555544    444321     1 234455555554433         456666666666666521111112


Q ss_pred             HHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhc-------CC------CCC---
Q 036290          450 TFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNG-------AE------RLD---  513 (796)
Q Consensus       450 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~------~~~---  513 (796)
                      .|..........+. ..+..++.                     .+.++++.|..++..       +.      .|+   
T Consensus       167 ~~~~~~~~e~~~~~-~~~~~~l~---------------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~  224 (530)
T 2ooe_A          167 LWRDYNKYEEGINI-HLAKKMIE---------------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTP  224 (530)
T ss_dssp             HHHHHHHHHHHHCH-HHHHHHHH---------------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--C
T ss_pred             HHHHHHHHHHhhch-hHHHHHHH---------------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCCh
Confidence            22221111000000 00000000                     012233344333322       11      111   


Q ss_pred             -----HhhHHHHHHHHHHc----CCh----hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-------cCchH-------
Q 036290          514 -----MASWGAMMSALVHQ----GHN----HEAVTIFHSLVEAGEKPDEYILGTILNSCAA-------IGAYQ-------  566 (796)
Q Consensus       514 -----~~~~~~li~~~~~~----~~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~~~~~-------  566 (796)
                           ...|...+......    ++.    +.+..+|++..... +-+...|..+...+.+       .|+++       
T Consensus       225 ~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~  303 (530)
T 2ooe_A          225 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD  303 (530)
T ss_dssp             CHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhH
Confidence                 23455444332222    222    36778888887652 4456677777776664       68876       


Q ss_pred             HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C-Ch-hHHHHHHHHHHhcCChHHHHHHHHHHH
Q 036290          567 RTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N-DV-IVYNTLIMAYAHHGLVSEAMEIFDKMK  643 (796)
Q Consensus       567 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~  643 (796)
                      .|..+++...+.-.+.+...+..++..+.+.|++++|..+|++.+.. | +. ..|..++..+.+.|++++|.++|++..
T Consensus       304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al  383 (530)
T 2ooe_A          304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR  383 (530)
T ss_dssp             HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            88888888876323336788899999999999999999999777665 3 33 578999999999999999999999998


Q ss_pred             HCCCCCC-HHHHHHHHHH-HhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC----CCC
Q 036290          644 LANLQPS-QATFVSVMSA-CSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM----PFQ  716 (796)
Q Consensus       644 ~~g~~p~-~~t~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~  716 (796)
                      +.  .|+ ...|...... +...|++++|..+|+...+.   .|+ +..|..++..+.+.|+.++|..+|++.    +..
T Consensus       384 ~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~  458 (530)
T 2ooe_A          384 ED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  458 (530)
T ss_dssp             TC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred             hc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence            83  443 3333332222 33589999999999999854   465 788999999999999999999999998    223


Q ss_pred             CC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 036290          717 PS--PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPK  751 (796)
Q Consensus       717 p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  751 (796)
                      |+  ...|...+......|+.+.+..+.+++.+..|+
T Consensus       459 ~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~  495 (530)
T 2ooe_A          459 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE  495 (530)
T ss_dssp             GGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence            32  348888888888999999999999999999885

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.65  E-value=2e-15  Score=158.04  Aligned_cols=295  Identities=10%  Similarity=-0.014  Sum_probs=155.2

Q ss_pred             HhcCChHHHHH-HHHhCCC-----C--ChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcH
Q 036290          393 CRCGAVEMAHS-VFDNVSY-----K--NITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQ  464 (796)
Q Consensus       393 ~~~g~~~~A~~-~~~~~~~-----~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~  464 (796)
                      ...|++++|.. .|++...     |  +...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++
T Consensus        36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~  114 (368)
T 1fch_A           36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE  114 (368)
T ss_dssp             ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence            34466666666 6654432     1  23445666666666666666666666666542 22333444444444444444


Q ss_pred             HHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 036290          465 QMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAG  544 (796)
Q Consensus       465 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g  544 (796)
                      +.|...++.+.+.. +                               .+..++..+...+...|++++|...++++....
T Consensus       115 ~~A~~~~~~al~~~-~-------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  162 (368)
T 1fch_A          115 LLAISALRRCLELK-P-------------------------------DNQTALMALAVSFTNESLQRQACEILRDWLRYT  162 (368)
T ss_dssp             HHHHHHHHHHHHHC-T-------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhcC-C-------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            44444444444432 1                               234455555555666666666666666665442


Q ss_pred             CCCCHH-HHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C---ChhHH
Q 036290          545 EKPDEY-ILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N---DVIVY  619 (796)
Q Consensus       545 ~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~---~~~~~  619 (796)
                        |+.. .+..+..       ....           .. ....+..+...+ ..|++++|...+++.+.. |   +...+
T Consensus       163 --~~~~~~~~~~~~-------~~~~-----------~~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~  220 (368)
T 1fch_A          163 --PAYAHLVTPAEE-------GAGG-----------AG-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQ  220 (368)
T ss_dssp             --TTTGGGCC----------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred             --cCcHHHHHHHHH-------Hhhh-----------hc-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHH
Confidence              2211 1100000       0000           00 000000111122 455555555555433322 1   35566


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHH
Q 036290          620 NTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDML  697 (796)
Q Consensus       620 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~  697 (796)
                      ..+...+...|++++|...++++.+  ..| +..++..+...+...|++++|...++++.+.   .|+ ...+..++.+|
T Consensus       221 ~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~  295 (368)
T 1fch_A          221 CGLGVLFNLSGEYDKAVDCFTAALS--VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL---QPGYIRSRYNLGISC  295 (368)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHH
Confidence            6667777777777777777777766  344 4556777777777777777777777777633   344 66677777777


Q ss_pred             HhcCChHHHHHHHHhC-CCCC------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 036290          698 SRNGYLEDAKHVIEIM-PFQP------------SPTVYRSLLSGCRIHGNKELGEWASEKLLL  747 (796)
Q Consensus       698 ~~~g~~~~A~~~~~~~-~~~p------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  747 (796)
                      .+.|++++|.+.++++ ...|            ...+|..+..++...|+.++|..++++.++
T Consensus       296 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  358 (368)
T 1fch_A          296 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS  358 (368)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence            7777777777777766 1111            146777788888888888888777776554

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.65  E-value=6.6e-17  Score=177.22  Aligned_cols=147  Identities=10%  Similarity=0.003  Sum_probs=126.6

Q ss_pred             chhhHHHHHHHHccCChhHHHHHhcccC-------CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHH
Q 036290           79 IFLQNNLIAMYSKCGYFGWGLRVFDEMA-------ERNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSV  151 (796)
Q Consensus        79 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l  151 (796)
                      ..+||+||++|+++|++++|.++|++|.       .||++|||+||.+||+.|+.++|.++|++|.+.|+.||..||+++
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            3589999999999999999999997763       599999999999999999999999999999999999999999999


Q ss_pred             HHHHhccCCh-hHHHHHHHHHHHhcCCCChhHhhHHHHHHHccCChhHHHHHhhccCCC-----CceeHHHHHHHHHhCC
Q 036290          152 MKVCVSMGAS-EFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSD-----DVGCWNAMIGGYAHCG  225 (796)
Q Consensus       152 l~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g  225 (796)
                      |.++|+.|.. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.+++..+..+     .+.+...|...|.+.+
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~  286 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG  286 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence            9999999985 789999999999999999999999999888877666666665555421     2334445556666555

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.64  E-value=1.4e-15  Score=159.12  Aligned_cols=259  Identities=14%  Similarity=0.027  Sum_probs=184.5

Q ss_pred             cCCcchHHH-HHhcCCC-----C--CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHH
Q 036290          496 FGQLDNSFE-FSNGAER-----L--DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQR  567 (796)
Q Consensus       496 ~g~~~~A~~-~~~~~~~-----~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~  567 (796)
                      .|++++|.+ .++....     |  +...+..+...+.+.|++++|...|+++.+.. +.+...+..+..++...|+++.
T Consensus        38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~  116 (368)
T 1fch_A           38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL  116 (368)
T ss_dssp             --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence            345555555 5553332     1  23446666666777777777777777776553 3455666666667777777777


Q ss_pred             HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C-ChhHHHH---------------HHHHHHhcC
Q 036290          568 TKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N-DVIVYNT---------------LIMAYAHHG  630 (796)
Q Consensus       568 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~---------------li~~~~~~g  630 (796)
                      |...++.+.+.... +...+..+...|...|++++|.+.+++.+.. | +...+..               .+..+...|
T Consensus       117 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (368)
T 1fch_A          117 AISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS  195 (368)
T ss_dssp             HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHH
T ss_pred             HHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence            77777777665533 5666677777777777777777777554432 2 2222211               233334889


Q ss_pred             ChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHH
Q 036290          631 LVSEAMEIFDKMKLANLQPS---QATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDA  706 (796)
Q Consensus       631 ~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A  706 (796)
                      ++++|...++++.+  ..|+   ..++..+...+...|++++|...++++...   .|+ ...+..++.++.+.|++++|
T Consensus       196 ~~~~A~~~~~~a~~--~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A  270 (368)
T 1fch_A          196 LFLEVKELFLAAVR--LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEA  270 (368)
T ss_dssp             HHHHHHHHHHHHHH--HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHHHH--hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHH
Confidence            99999999999998  4454   678889999999999999999999999844   455 78899999999999999999


Q ss_pred             HHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC-----------CcceEEecC
Q 036290          707 KHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKN-----------DAAHVLLSK  761 (796)
Q Consensus       707 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~  761 (796)
                      .+.++++ ...| +..+|..+..++.+.|++++|...+++++++.|++           +.+|..|+.
T Consensus       271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~  338 (368)
T 1fch_A          271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRL  338 (368)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHH
Confidence            9999998 3444 56789999999999999999999999999999987           566665554

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.63  E-value=1.9e-12  Score=140.84  Aligned_cols=176  Identities=11%  Similarity=-0.034  Sum_probs=96.9

Q ss_pred             cCCcchHHHHHhcCCC-CCHhhHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-----Cch
Q 036290          496 FGQLDNSFEFSNGAER-LDMASWGAMMSALVH----QGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAI-----GAY  565 (796)
Q Consensus       496 ~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-----~~~  565 (796)
                      .+++++|.+.|+...+ .+...+..+...|..    .+++++|...|++..+.|   +...+..+-..+...     ++.
T Consensus       236 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~  312 (490)
T 2xm6_A          236 TQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNR  312 (490)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCH
Confidence            3344444444443322 233334444444444    455555666555554443   223333344444433     566


Q ss_pred             HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhccCCCCChhHHHHHHHHHHh----cCChHHHHHH
Q 036290          566 QRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCG---DIKGARMAFDQSFNSNDVIVYNTLIMAYAH----HGLVSEAMEI  638 (796)
Q Consensus       566 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~  638 (796)
                      ++|...++...+.|   +...+..+...|...|   +.++|.+.|++.....+...+..+...|..    .+++++|.+.
T Consensus       313 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~  389 (490)
T 2xm6_A          313 EQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIW  389 (490)
T ss_dssp             HHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             HHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            66666666655543   3344555555555544   566666666655555666666667666666    6677777777


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHhh
Q 036290          639 FDKMKLANLQPSQATFVSVMSACSH----KGLVDKGCLLFKSMDSQ  680 (796)
Q Consensus       639 ~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~A~~~~~~~~~~  680 (796)
                      |++..+.|   +...+..|...|..    .+++++|...|++....
T Consensus       390 ~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  432 (490)
T 2xm6_A          390 MRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN  432 (490)
T ss_dssp             HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            77776644   34455555555555    66777777777776644

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.62  E-value=7.6e-13  Score=145.55  Aligned_cols=409  Identities=14%  Similarity=0.084  Sum_probs=264.4

Q ss_pred             CCChHHHHHHHHhhhcCCCHHHHHHHHhhcCC--C-CcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHH
Q 036290          278 ECSISIVNALIDMYIKSSGMDYAFKVFERMAD--K-DVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILL  354 (796)
Q Consensus       278 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll  354 (796)
                      +-+...|..++. +.+.|+++.|..+|+++.+  | +...|...+..+.+.|++++|.++|++....  .|+...+...+
T Consensus        10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~   86 (530)
T 2ooe_A           10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYL   86 (530)
T ss_dssp             TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHH
T ss_pred             CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHH
Confidence            347788999998 4788999999999999875  3 5668999999999999999999999999876  36666666555


Q ss_pred             HHh-cccCChHHHHH----HHHHHHHh-CCCC-chhHHHHHHHHHHh---------cCChHHHHHHHHhCCC-CCh---h
Q 036290          355 RQC-GKLLDLDLGLQ----LQCLALHC-GFLD-EENVTSSLIYMFCR---------CGAVEMAHSVFDNVSY-KNI---T  414 (796)
Q Consensus       355 ~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~ll~~~~~---------~g~~~~A~~~~~~~~~-~~~---~  414 (796)
                      ... ...|+.+.|.+    +|+...+. |..| +...|...+....+         .|+++.|..+|++... |..   .
T Consensus        87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~  166 (530)
T 2ooe_A           87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ  166 (530)
T ss_dssp             HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred             HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence            432 34567766655    77766553 6554 56677777777655         7889999999998775 321   2


Q ss_pred             hHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHH------hC---CCCCc--
Q 036290          415 TWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIK------TG---FSSCG--  483 (796)
Q Consensus       415 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~------~~---~~~~~--  483 (796)
                      .|..........|.                    .+...++.  ...+++..|..++.....      ..   ++|+.  
T Consensus       167 ~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~  224 (530)
T 2ooe_A          167 LWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTP  224 (530)
T ss_dssp             HHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--C
T ss_pred             HHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCCh
Confidence            23222211100010                    01111111  122334444444443211      11   12221  


Q ss_pred             ------hhHhHHHHHHHhc----CCc----chHHHHHhcCCC---CCHhhHHHHHHHHHH-------cCChh-------H
Q 036290          484 ------YICSSLIKSYVNF----GQL----DNSFEFSNGAER---LDMASWGAMMSALVH-------QGHNH-------E  532 (796)
Q Consensus       484 ------~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~---~~~~~~~~li~~~~~-------~~~~~-------~  532 (796)
                            ..+...+......    ++.    +.+..+|++...   .+...|..+...+.+       .|+++       +
T Consensus       225 ~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~  304 (530)
T 2ooe_A          225 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE  304 (530)
T ss_dssp             CHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHH
Confidence                  2233333222111    121    244455555443   355666666666654       57766       7


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC
Q 036290          533 AVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFN  612 (796)
Q Consensus       533 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  612 (796)
                      |..+|++..+.-.+-+...+..+...+.+.|+++.|..+++.+.+.........|..++..+.+.|++++|.++|++.+.
T Consensus       305 A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~  384 (530)
T 2ooe_A          305 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE  384 (530)
T ss_dssp             HHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            88888877642123346677777777788888888888888887743321124777788888888888889888877776


Q ss_pred             CC--ChhHHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC--
Q 036290          613 SN--DVIVYNTLIMA-YAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS--  686 (796)
Q Consensus       613 ~~--~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--  686 (796)
                      .+  +...|...+.. +...|+.++|..+|++..+  ..| +...|..++..+.+.|+.++|..+|+++.......|+  
T Consensus       385 ~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~--~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~  462 (530)
T 2ooe_A          385 DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK--KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS  462 (530)
T ss_dssp             CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGC
T ss_pred             ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHH
Confidence            54  22233222222 3368999999999999887  456 5677888888889999999999999998855333343  


Q ss_pred             chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          687 PDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       687 ~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      ...|...+......|+.+.+.++.+++
T Consensus       463 ~~lw~~~~~~e~~~G~~~~~~~~~~r~  489 (530)
T 2ooe_A          463 GEIWARFLAFESNIGDLASILKVEKRR  489 (530)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            347777788888899999999888877

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.62  E-value=1.7e-13  Score=148.74  Aligned_cols=369  Identities=11%  Similarity=-0.048  Sum_probs=172.2

Q ss_pred             chHHHHHHHhcccCChHHHHHHHHHHHHh--------CCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCC---------
Q 036290          348 VTFSILLRQCGKLLDLDLGLQLQCLALHC--------GFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSY---------  410 (796)
Q Consensus       348 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--------g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---------  410 (796)
                      ..|+.+-..+...|+.++|.+.|+...+.        ..+....+|+.+...|...|++++|...+++...         
T Consensus        52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~  131 (472)
T 4g1t_A           52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY  131 (472)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence            34666666666667777777666655431        1111234455555666666666666555544321         


Q ss_pred             --CChhhHHHHHHHHHh--cCCchHHHHHHHHHHhcCCcccH-HHHHHHHHH---hcccCcHHHHHHHHHHHHHhCCCCC
Q 036290          411 --KNITTWNELLSGYCF--NCCDADVLKTFCNIWESGVEVNG-CTFFYVVET---CCRSENQQMVGQIHGAIIKTGFSSC  482 (796)
Q Consensus       411 --~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~  482 (796)
                        ....++..+..++..  .+++++|+..|++..+.  .|+. ..+..+..+   +...++.+.|.+.++..++.. +.+
T Consensus       132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~  208 (472)
T 4g1t_A          132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN  208 (472)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred             chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence              011233333333332  22345555555554442  2221 111111111   222333344444444444433 222


Q ss_pred             chhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 036290          483 GYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAI  562 (796)
Q Consensus       483 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~  562 (796)
                      ..++..+...+...+                           ...++.++|.+.+++..... +.+...+..+...+...
T Consensus       209 ~~~~~~l~~~~~~~~---------------------------~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~  260 (472)
T 4g1t_A          209 QYLKVLLALKLHKMR---------------------------EEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRK  260 (472)
T ss_dssp             HHHHHHHHHHHHHCC---------------------------------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHH---------------------------hhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHc
Confidence            333333332222211                           11233444455444443332 22333444444444555


Q ss_pred             CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------------------cCCHHHHHHHHhccCC--CCChhHHHH
Q 036290          563 GAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAK-------------------CGDIKGARMAFDQSFN--SNDVIVYNT  621 (796)
Q Consensus       563 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~~~~--~~~~~~~~~  621 (796)
                      |+++.|...++...+..+. +...+..+..+|..                   .+..++|...++....  ..+...+..
T Consensus       261 ~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  339 (472)
T 4g1t_A          261 DEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSI  339 (472)
T ss_dssp             TCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHH
T ss_pred             CchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhh
Confidence            5555555555544443322 23333333333221                   1235566666644433  246677888


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHH
Q 036290          622 LIMAYAHHGLVSEAMEIFDKMKLANLQPSQA--TFVSVMS-ACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLS  698 (796)
Q Consensus       622 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~-~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~  698 (796)
                      +...|...|++++|+..|++..+....|...  .+..+.. .....|++++|+..|++..   .+.|+........    
T Consensus       340 lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~~~~~~~----  412 (472)
T 4g1t_A          340 LASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQKSREKEKMK----  412 (472)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCHHHHHHH----
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcccHHHHHHH----
Confidence            9999999999999999999998844333211  1222222 2357889999999999887   5677643332222    


Q ss_pred             hcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEec
Q 036290          699 RNGYLEDAKHVIEIM-PF-QPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLS  760 (796)
Q Consensus       699 ~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~  760 (796)
                           ..+.+++++. .. +.+..+|..+...+...|++++|++.+++++++.|.+|.+...+.
T Consensus       413 -----~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G  471 (472)
T 4g1t_A          413 -----DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG  471 (472)
T ss_dssp             -----HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred             -----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence                 2233344433 22 346678999999999999999999999999999999998876654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.62  E-value=3.9e-15  Score=155.63  Aligned_cols=255  Identities=13%  Similarity=0.058  Sum_probs=160.7

Q ss_pred             HhHHHHHHHhcCCcchHHHHHhcCCC---CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 036290          486 CSSLIKSYVNFGQLDNSFEFSNGAER---LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAI  562 (796)
Q Consensus       486 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~  562 (796)
                      +..+...+.+.|++++|.+.|+.+.+   .+...|..+...+.+.|++++|...|++..+.. +.+..++..+...+...
T Consensus        68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~  146 (365)
T 4eqf_A           68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNT  146 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHcc
Confidence            33444444444444444444444332   234445555555555555555555555554432 22344555555555555


Q ss_pred             CchHHHHHHHHHHHHhCCCC---------chhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C---ChhHHHHHHHHHHhc
Q 036290          563 GAYQRTKSIHPFVIKLGFNT---------EVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N---DVIVYNTLIMAYAHH  629 (796)
Q Consensus       563 ~~~~~a~~~~~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~---~~~~~~~li~~~~~~  629 (796)
                      |+++.|...++.+.+.....         ....+..+...+...|++++|.+.+++.+.. |   +...+..+...|...
T Consensus       147 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~  226 (365)
T 4eqf_A          147 SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS  226 (365)
T ss_dssp             TCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC
Confidence            55555555555555432110         1223334566777777888887777655442 2   567788888888888


Q ss_pred             CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHH
Q 036290          630 GLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAK  707 (796)
Q Consensus       630 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~  707 (796)
                      |++++|.+.++++.+  ..| +..+|..+..+|...|++++|+..|+++.+.   .|+ ..++..++.+|.+.|++++|.
T Consensus       227 g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~  301 (365)
T 4eqf_A          227 GEFNRAIDAFNAALT--VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI---QPGFIRSRYNLGISCINLGAYREAV  301 (365)
T ss_dssp             TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred             CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHCCCHHHHH
Confidence            899999999888887  445 6677888888889999999999999888833   555 778888899999999999999


Q ss_pred             HHHHhC-CCCC-------------CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 036290          708 HVIEIM-PFQP-------------SPTVYRSLLSGCRIHGNKELGEWASEKLL  746 (796)
Q Consensus       708 ~~~~~~-~~~p-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  746 (796)
                      +.++++ ...|             +..+|..+..++...|+.+.+..+.++.+
T Consensus       302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l  354 (365)
T 4eqf_A          302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL  354 (365)
T ss_dssp             HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred             HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence            998887 1111             25778899999999999988888776643

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.61  E-value=3.9e-15  Score=152.83  Aligned_cols=257  Identities=9%  Similarity=0.007  Sum_probs=160.8

Q ss_pred             HHHHHhcCCcchHHHHHhcCCC---CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchH
Q 036290          490 IKSYVNFGQLDNSFEFSNGAER---LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQ  566 (796)
Q Consensus       490 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~  566 (796)
                      ...+...|++++|..+|+.+.+   .+...|..+...+...|++++|...++++.+.. +.+..++..+...+...|+++
T Consensus        28 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~  106 (327)
T 3cv0_A           28 GLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNAN  106 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHH
Confidence            3334444444444444433321   133344444444555555555555555544432 223444444455555555555


Q ss_pred             HHHHHHHHHHHhCCCCchhHHHHH--------------HH-HHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhc
Q 036290          567 RTKSIHPFVIKLGFNTEVYVASAV--------------ID-AYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHH  629 (796)
Q Consensus       567 ~a~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~  629 (796)
                      .|.+.++.+.+.... +...+..+              .. .+...|++++|.+.+++.+..  .+...+..+...+...
T Consensus       107 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  185 (327)
T 3cv0_A          107 AALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLS  185 (327)
T ss_dssp             HHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Confidence            555555555443222 11111111              11 255667777777777554432  3667788888888888


Q ss_pred             CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHH
Q 036290          630 GLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAK  707 (796)
Q Consensus       630 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~  707 (796)
                      |++++|.+.++++.+  ..| +..++..+...+...|++++|...++++.+.   .|+ ...+..++.++.+.|++++|.
T Consensus       186 ~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~g~~~~A~  260 (327)
T 3cv0_A          186 NNYDSAAANLRRAVE--LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI---NPGYVRVMYNMAVSYSNMSQYDLAA  260 (327)
T ss_dssp             TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhccHHHHH
Confidence            888888888888887  345 5667888888888899999999999888743   444 777888888999999999999


Q ss_pred             HHHHhC-CCCCC-------------HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 036290          708 HVIEIM-PFQPS-------------PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKND  753 (796)
Q Consensus       708 ~~~~~~-~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  753 (796)
                      +.++++ ...|+             ..+|..+..++.+.|+.++|..+++++++..|++.
T Consensus       261 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~  320 (327)
T 3cv0_A          261 KQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEF  320 (327)
T ss_dssp             HHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHT
T ss_pred             HHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhh
Confidence            888877 22333             56788888889999999999999888877665443

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.61  E-value=2.9e-16  Score=172.24  Aligned_cols=130  Identities=12%  Similarity=0.058  Sum_probs=111.2

Q ss_pred             ChHHHHHHHHhhhcCCCHHHHHHHHhhcC-------CCCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHH
Q 036290          280 SISIVNALIDMYIKSSGMDYAFKVFERMA-------DKDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSI  352 (796)
Q Consensus       280 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~  352 (796)
                      -..+||+||++||+.|++++|.++|++|.       .||+++||+||.+||+.|++++|.++|++|.+.|+.||..||++
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            44678899999999999999999987653       47999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccCCh-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036290          353 LLRQCGKLLDL-DLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVS  409 (796)
Q Consensus       353 ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~  409 (796)
                      +|.++++.|+. +.|.++|++|.+.|+.||..+|++++....+.+-++.+.++...+.
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~  263 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFS  263 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccC
Confidence            99999999874 7889999999999999999999999988877765555555544443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.61  E-value=1.7e-14  Score=150.71  Aligned_cols=265  Identities=12%  Similarity=0.028  Sum_probs=188.7

Q ss_pred             ChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHH
Q 036290          412 NITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIK  491 (796)
Q Consensus       412 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  491 (796)
                      +...|..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|+++.|...++.+.+.. +           
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p-----------  130 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-P-----------  130 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-----------
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C-----------
Confidence            44557777888888888888888888877642 2244555555555555555666655555555443 2           


Q ss_pred             HHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHh
Q 036290          492 SYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPD-----------EYILGTILNSCA  560 (796)
Q Consensus       492 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-----------~~t~~~ll~~~~  560 (796)
                                          .+..+|..+...|...|++++|...|+++.+.  .|+           ...+..+...+.
T Consensus       131 --------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~  188 (365)
T 4eqf_A          131 --------------------NNLKALMALAVSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPV  188 (365)
T ss_dssp             --------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------
T ss_pred             --------------------CCHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHh
Confidence                                23455666666666667777777777766553  222           122334466788


Q ss_pred             ccCchHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHH
Q 036290          561 AIGAYQRTKSIHPFVIKLGFN-TEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAME  637 (796)
Q Consensus       561 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~  637 (796)
                      ..|+++.|.+.++.+.+.... ++...+..+...|...|++++|.+.+++.+..  .+..+|..+...|...|++++|..
T Consensus       189 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  268 (365)
T 4eqf_A          189 DSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVE  268 (365)
T ss_dssp             CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            888999999999988886544 26778888999999999999999999766553  477899999999999999999999


Q ss_pred             HHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCC----------CCCchHHHHHHHHHHhcCChHHH
Q 036290          638 IFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGM----------QPSPDCYGCLVDMLSRNGYLEDA  706 (796)
Q Consensus       638 ~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~----------~p~~~~~~~l~~~~~~~g~~~~A  706 (796)
                      .|+++.+  ..| +..++..+...|...|++++|...|+++.+...-          ..+...|..+..++...|+.+.|
T Consensus       269 ~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  346 (365)
T 4eqf_A          269 AYTRALE--IQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF  346 (365)
T ss_dssp             HHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHh--cCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHH
Confidence            9999998  456 5778899999999999999999999998843110          01267899999999999999999


Q ss_pred             HHHHHhC
Q 036290          707 KHVIEIM  713 (796)
Q Consensus       707 ~~~~~~~  713 (796)
                      .+..++-
T Consensus       347 ~~~~~~~  353 (365)
T 4eqf_A          347 QAANLGD  353 (365)
T ss_dssp             HHHHTTC
T ss_pred             HHHHHhh
Confidence            9887764

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.58  E-value=1.3e-12  Score=130.52  Aligned_cols=250  Identities=9%  Similarity=-0.019  Sum_probs=172.3

Q ss_pred             HHHHhcCChHHHHHHHHhCCCCCh----hhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHH
Q 036290          390 YMFCRCGAVEMAHSVFDNVSYKNI----TTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQ  465 (796)
Q Consensus       390 ~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~  465 (796)
                      +-....|++..|+..++.....+.    .....+..+|...|+++.|+..++.    .-.|+..++..+...+...++.+
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~   82 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD   82 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence            344557888888888877665332    2445567788888888888876644    24566777788888888888888


Q ss_pred             HHHHHHHHHHHhCCCC-CchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 036290          466 MVGQIHGAIIKTGFSS-CGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAG  544 (796)
Q Consensus       466 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g  544 (796)
                      .|.+.++.+.+.+..| ++..+..+...+...|++++|.+.+++  ..+...+..++..+.+.|++++|.+.|+++.+. 
T Consensus        83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-  159 (291)
T 3mkr_A           83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-  159 (291)
T ss_dssp             HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence            8888888888876544 566677778899999999999999998  457778888999999999999999999999876 


Q ss_pred             CCCCHHHH---HHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHH
Q 036290          545 EKPDEYIL---GTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVY  619 (796)
Q Consensus       545 ~~p~~~t~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~  619 (796)
                       .|+....   ..++..+...|++++|..+++++.+... .+...++.+..++.+.|++++|.+.+++.+..  .+..++
T Consensus       160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l  237 (291)
T 3mkr_A          160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL  237 (291)
T ss_dssp             -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence             3553211   1222333445777778877777776632 35556666666666666666666666544432  255556


Q ss_pred             HHHHHHHHhcCChHH-HHHHHHHHHHCCCCCC
Q 036290          620 NTLIMAYAHHGLVSE-AMEIFDKMKLANLQPS  650 (796)
Q Consensus       620 ~~li~~~~~~g~~~~-A~~~~~~m~~~g~~p~  650 (796)
                      ..++..+...|+.++ +.++++++.+  +.|+
T Consensus       238 ~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~  267 (291)
T 3mkr_A          238 INLVVLSQHLGKPPEVTNRYLSQLKD--AHRS  267 (291)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHH--HCTT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHH--hCCC
Confidence            666666666665543 3455666555  4453

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.57  E-value=1.5e-13  Score=140.99  Aligned_cols=260  Identities=10%  Similarity=0.049  Sum_probs=190.1

Q ss_pred             hhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHH
Q 036290          413 ITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKS  492 (796)
Q Consensus       413 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  492 (796)
                      ...+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|+++.|...++.+.+.. +.           
T Consensus        21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~-----------   87 (327)
T 3cv0_A           21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PK-----------   87 (327)
T ss_dssp             SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----------
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cC-----------
Confidence            3456667777778888888888888877642 2244555555566666666666666666665543 22           


Q ss_pred             HHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHH------------H-H-
Q 036290          493 YVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEY-ILGTI------------L-N-  557 (796)
Q Consensus       493 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-t~~~l------------l-~-  557 (796)
                                          +...+..+...+...|++++|.+.+++..+.  .|+.. .+..+            + . 
T Consensus        88 --------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (327)
T 3cv0_A           88 --------------------DIAVHAALAVSHTNEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSED  145 (327)
T ss_dssp             --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTTTC--------------------
T ss_pred             --------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHh
Confidence                                3344555555666666666666666666544  22221 12111            0 3 


Q ss_pred             -HHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHH
Q 036290          558 -SCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSE  634 (796)
Q Consensus       558 -~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~  634 (796)
                       .+...|+++.|...++.+.+.... +...+..+...|...|++++|.+.+++.+..  .+...|..+...+...|++++
T Consensus       146 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  224 (327)
T 3cv0_A          146 FFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQE  224 (327)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Confidence             377788999999999988887654 6788888999999999999999999665543  467889999999999999999


Q ss_pred             HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-------------chHHHHHHHHHHhc
Q 036290          635 AMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-------------PDCYGCLVDMLSRN  700 (796)
Q Consensus       635 A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~  700 (796)
                      |...++++.+  ..| +..++..+...+...|++++|.+.++++...   .|+             ...+..+..++.+.
T Consensus       225 A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  299 (327)
T 3cv0_A          225 ALDAYNRALD--INPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM---QVGGTTPTGEASREATRSMWDFFRMLLNVM  299 (327)
T ss_dssp             HHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTSCC-----CCTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHH--cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccccccccchhhcCHHHHHHHHHHHHhc
Confidence            9999999988  445 6778889999999999999999999998844   343             67888999999999


Q ss_pred             CChHHHHHHHHhC
Q 036290          701 GYLEDAKHVIEIM  713 (796)
Q Consensus       701 g~~~~A~~~~~~~  713 (796)
                      |++++|.+++++.
T Consensus       300 g~~~~A~~~~~~~  312 (327)
T 3cv0_A          300 NRPDLVELTYAQN  312 (327)
T ss_dssp             TCHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHH
Confidence            9999999998865

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.53  E-value=9.8e-14  Score=136.79  Aligned_cols=231  Identities=12%  Similarity=0.022  Sum_probs=189.0

Q ss_pred             HhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCC--Cc----hhHH
Q 036290          514 MASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFN--TE----VYVA  587 (796)
Q Consensus       514 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~  587 (796)
                      ...|..+...+...|++++|...|++..+..  .+...+..+..++...|+++.|.+.++...+....  ++    ...+
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            3456777788888899999999999888776  77788888888899999999999998888774322  12    5788


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhccCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC
Q 036290          588 SAVIDAYAKCGDIKGARMAFDQSFNS-NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKG  665 (796)
Q Consensus       588 ~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g  665 (796)
                      ..+...|...|++++|...+++.+.. |+       ...+...|++++|...++++..  ..| +...+..+...+...|
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  153 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKS  153 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhc
Confidence            88899999999999999999665553 33       2456677889999999999998  556 5567888888999999


Q ss_pred             CHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 036290          666 LVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWAS  742 (796)
Q Consensus       666 ~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~  742 (796)
                      ++++|...++++...   .|+ ...+..++.++.+.|++++|.+.+++. ...| +...|..+..++...|++++|...+
T Consensus       154 ~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  230 (258)
T 3uq3_A          154 DWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL  230 (258)
T ss_dssp             CHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            999999999999844   444 788899999999999999999999988 3344 5678999999999999999999999


Q ss_pred             HHHHccC------CCCCcceEE
Q 036290          743 EKLLLLL------PKNDAAHVL  758 (796)
Q Consensus       743 ~~~~~~~------p~~~~~~~~  758 (796)
                      +++++++      |++...+..
T Consensus       231 ~~a~~~~~~~~~~p~~~~~~~~  252 (258)
T 3uq3_A          231 DAARTKDAEVNNGSSAREIDQL  252 (258)
T ss_dssp             HHHHHHHHHHHTTTTHHHHHHH
T ss_pred             HHHHHhChhhcCCCchHHHHHH
Confidence            9999998      776655433

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.50  E-value=3.9e-13  Score=133.79  Aligned_cols=237  Identities=14%  Similarity=0.027  Sum_probs=167.8

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCc--hhHHHHHHHHH
Q 036290          517 WGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTE--VYVASAVIDAY  594 (796)
Q Consensus       517 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~  594 (796)
                      +......+...|++++|+..|++..+.. +.+...+..+...+...|+++.|.+.++...+....++  ...+..+...|
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~   84 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL   84 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence            3344556666677777777777766542 22333566666677777777777777777666332222  23467777778


Q ss_pred             HhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHH
Q 036290          595 AKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGC  671 (796)
Q Consensus       595 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~  671 (796)
                      ...|++++|.+.+++.+..  .+...|..+...|...|++++|.+.+++..+  ..| +...+..+...+...+++++|.
T Consensus        85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~  162 (272)
T 3u4t_A           85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYYNKEYVKAD  162 (272)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888655543  3667788888888888888888888888877  455 5555666662444455899999


Q ss_pred             HHHHHhHhhcCCCCC-chHHHHHHHHHHhcCC---hHHHHHHHHhC----CCCCCH------HHHHHHHHHHHhcCChHH
Q 036290          672 LLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGY---LEDAKHVIEIM----PFQPSP------TVYRSLLSGCRIHGNKEL  737 (796)
Q Consensus       672 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~~------~~~~~l~~~~~~~g~~~~  737 (796)
                      ..++++.+   ..|+ ...+..+..++...|+   +++|...++++    ...|+.      .+|..+...+...|++++
T Consensus       163 ~~~~~a~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  239 (272)
T 3u4t_A          163 SSFVKVLE---LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK  239 (272)
T ss_dssp             HHHHHHHH---HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHH---hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence            99988883   3555 6677778888888887   77788887776    222442      577888888999999999


Q ss_pred             HHHHHHHHHccCCCCCcceEEe
Q 036290          738 GEWASEKLLLLLPKNDAAHVLL  759 (796)
Q Consensus       738 A~~~~~~~~~~~p~~~~~~~~l  759 (796)
                      |...++++++++|+++.++-.+
T Consensus       240 A~~~~~~al~~~p~~~~a~~~l  261 (272)
T 3u4t_A          240 ADAAWKNILALDPTNKKAIDGL  261 (272)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHhcCccHHHHHHHh
Confidence            9999999999999998886555

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.48  E-value=1.3e-11  Score=133.76  Aligned_cols=378  Identities=10%  Similarity=-0.025  Sum_probs=234.3

Q ss_pred             CcchHHHHHHHHHhCCCccHHHHHHHHHHHc-----C--CCC-CcchHHHHHHHhcccCChHHHHHHHHHHHHh-----C
Q 036290          311 DVISWNTLFGGFSENKNPGQTASLFHKFILS-----G--SRP-NHVTFSILLRQCGKLLDLDLGLQLQCLALHC-----G  377 (796)
Q Consensus       311 ~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~-----g--~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g  377 (796)
                      ....||.+...+...|+.++|++.|++..+.     +  ..| ...+|+.+-..+...|++++|...++...+.     +
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            4567999999999999999999999987542     1  123 2457888889999999999999999887652     1


Q ss_pred             -CC-CchhHHHHHHHHHHhc--CChHHHHHHHHhCCC--C-ChhhHHHHHHH---HHhcCCchHHHHHHHHHHhcCCccc
Q 036290          378 -FL-DEENVTSSLIYMFCRC--GAVEMAHSVFDNVSY--K-NITTWNELLSG---YCFNCCDADVLKTFCNIWESGVEVN  447 (796)
Q Consensus       378 -~~-~~~~~~~~ll~~~~~~--g~~~~A~~~~~~~~~--~-~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~g~~p~  447 (796)
                       .. ....++..+..++...  +++++|...|++..+  | +...+..+...   +...++.++|++.+++..+.  .|+
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~  207 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPD  207 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSS
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCc
Confidence             11 1345565555555554  468999999998763  4 44455554444   44568889999999988774  343


Q ss_pred             -HHHHHHHHHHhc----ccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCC---CCHhhHHH
Q 036290          448 -GCTFFYVVETCC----RSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAER---LDMASWGA  519 (796)
Q Consensus       448 -~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~  519 (796)
                       ...+..+...+.    ..++.++|.+.++...+.. +.+..++..+...|...|++++|.+.+++..+   .+..++..
T Consensus       208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  286 (472)
T 4g1t_A          208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ  286 (472)
T ss_dssp             CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence             444444433333    3467788889988888775 55677778888888888888888888776654   23445555


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 036290          520 MMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGD  599 (796)
Q Consensus       520 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  599 (796)
                      +...|...+...         .... ...      ........+..+.|...++...+.... +...+..+...|...|+
T Consensus       287 lg~~y~~~~~~~---------~~~~-~~~------~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~  349 (472)
T 4g1t_A          287 IGCCYRAKVFQV---------MNLR-ENG------MYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQ  349 (472)
T ss_dssp             HHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHh---------hhHH-HHH------HHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhcc
Confidence            554443211100         0000 000      000011123456777777777776544 45567788899999999


Q ss_pred             HHHHHHHHhccCCC-CChh----HHHHHHH-HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 036290          600 IKGARMAFDQSFNS-NDVI----VYNTLIM-AYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLL  673 (796)
Q Consensus       600 ~~~A~~~~~~~~~~-~~~~----~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~  673 (796)
                      +++|...|++.+.. ++..    .+..+.. .+...|++++|+..|++..+  +.|+.......         .+.+.++
T Consensus       350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~---------~~~l~~~  418 (472)
T 4g1t_A          350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKM---------KDKLQKI  418 (472)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHH---------HHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHH---------HHHHHHH
Confidence            99999999776543 3222    2222322 23467899999999999998  77765443322         3344556


Q ss_pred             HHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHH
Q 036290          674 FKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM----PFQPSPTVY  722 (796)
Q Consensus       674 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~  722 (796)
                      ++.....   .|+ +.+|..+..+|...|++++|++.+++.    +..|+...|
T Consensus       419 ~~~~l~~---~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~  469 (472)
T 4g1t_A          419 AKMRLSK---NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW  469 (472)
T ss_dssp             HHHHHHH---CC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred             HHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence            6665533   454 889999999999999999999999988    234554444

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.45  E-value=1.9e-11  Score=121.44  Aligned_cols=230  Identities=10%  Similarity=-0.088  Sum_probs=187.5

Q ss_pred             CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCchHHHHHHHHHHHHhCCCCchhHHH
Q 036290          513 DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAA----IGAYQRTKSIHPFVIKLGFNTEVYVAS  588 (796)
Q Consensus       513 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~  588 (796)
                      ++.++..+...+...|++++|...|++..+.   -+...+..+-..+..    .+++++|...++...+.+   +...+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~   78 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   78 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            4556666777777888888888888887763   244566667777777    888888888888888776   677788


Q ss_pred             HHHHHHHh----cCCHHHHHHHHhccCCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036290          589 AVIDAYAK----CGDIKGARMAFDQSFNSNDVIVYNTLIMAYAH----HGLVSEAMEIFDKMKLANLQPSQATFVSVMSA  660 (796)
Q Consensus       589 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~  660 (796)
                      .+...|..    .+++++|.+.|++.+...+...+..+...|..    .+++++|.+.|++..+.+   +...+..+...
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~  155 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL  155 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence            88888888    99999999999877777788899999999999    999999999999999865   45667777777


Q ss_pred             Hhc----cCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 036290          661 CSH----KGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSR----NGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRI-  731 (796)
Q Consensus       661 ~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~-  731 (796)
                      +..    .+++++|...+++..+. +   ++..+..+..+|..    .+++++|.+.+++.-...+...+..+...+.. 
T Consensus       156 ~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g  231 (273)
T 1ouv_A          156 YDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG  231 (273)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence            777    89999999999998844 2   46778889999999    99999999999987222336788888888988 


Q ss_pred             ---cCChHHHHHHHHHHHccCCCCCcc
Q 036290          732 ---HGNKELGEWASEKLLLLLPKNDAA  755 (796)
Q Consensus       732 ---~g~~~~A~~~~~~~~~~~p~~~~~  755 (796)
                         .++.++|...++++.+..|+++..
T Consensus       232 ~~~~~~~~~A~~~~~~a~~~~~~~a~~  258 (273)
T 1ouv_A          232 EGVTRNEKQAIENFKKGCKLGAKGACD  258 (273)
T ss_dssp             SSSSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred             CCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence               899999999999999999876543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.44  E-value=2.9e-12  Score=125.73  Aligned_cols=208  Identities=9%  Similarity=0.002  Sum_probs=142.0

Q ss_pred             HhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 036290          514 MASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDA  593 (796)
Q Consensus       514 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  593 (796)
                      ...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|+++.|.+.++.+.+...             
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-------------  102 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-------------  102 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-------------
Confidence            4456666667777777777777777766542 22344444444444444444444444444433221             


Q ss_pred             HHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHH
Q 036290          594 YAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCL  672 (796)
Q Consensus       594 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~  672 (796)
                                          .+...+..+...|...|++++|.++++++.+.+..| +...+..+...+...|++++|..
T Consensus       103 --------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  162 (252)
T 2ho1_A          103 --------------------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE  162 (252)
T ss_dssp             --------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             --------------------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence                                245566667777777777777777777776633445 44566777778888888888888


Q ss_pred             HHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 036290          673 LFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLL  749 (796)
Q Consensus       673 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  749 (796)
                      .++++...   .|+ ...+..++.++...|++++|.+.++++ ...| +...+..+...+...|+.++|.+.++++++..
T Consensus       163 ~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~  239 (252)
T 2ho1_A          163 YFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY  239 (252)
T ss_dssp             HHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            88887743   344 677788888888888888888888887 3333 55677788888888899999999999999999


Q ss_pred             CCCCcceEE
Q 036290          750 PKNDAAHVL  758 (796)
Q Consensus       750 p~~~~~~~~  758 (796)
                      |+++.....
T Consensus       240 p~~~~~~~~  248 (252)
T 2ho1_A          240 PGSLEYQEF  248 (252)
T ss_dssp             TTSHHHHHH
T ss_pred             CCCHHHHHH
Confidence            988766543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.43  E-value=3.5e-12  Score=122.58  Aligned_cols=207  Identities=14%  Similarity=0.078  Sum_probs=141.7

Q ss_pred             HhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 036290          514 MASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDA  593 (796)
Q Consensus       514 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  593 (796)
                      ...|..+...+...|++++|.+.|++..+.. +.+..                                   .+..+...
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-----------------------------------~~~~l~~~   51 (225)
T 2vq2_A            8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNEL-----------------------------------AWLVRAEI   51 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH-----------------------------------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchH-----------------------------------HHHHHHHH
Confidence            4455555566666666666666666655432 22233                                   44444555


Q ss_pred             HHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHH
Q 036290          594 YAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHH-GLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDK  669 (796)
Q Consensus       594 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~  669 (796)
                      |...|++++|.+.+++.+..  .+...+..+...+... |++++|...++++.+.+..| +...+..+...+...|++++
T Consensus        52 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  131 (225)
T 2vq2_A           52 YQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL  131 (225)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHH
Confidence            55555555555555433321  3555667777777888 88888888888887733334 34567777788888888888


Q ss_pred             HHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 036290          670 GCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQ--PSPTVYRSLLSGCRIHGNKELGEWASEKL  745 (796)
Q Consensus       670 A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  745 (796)
                      |...++++.+.   .|+ ...+..++.++.+.|++++|.+.++++ ...  .+...+..+...+...|+.+.|...++.+
T Consensus       132 A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  208 (225)
T 2vq2_A          132 AEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL  208 (225)
T ss_dssp             HHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            88888888743   444 677888888888899999999888887 333  35566777777788889999999999999


Q ss_pred             HccCCCCCcceEEe
Q 036290          746 LLLLPKNDAAHVLL  759 (796)
Q Consensus       746 ~~~~p~~~~~~~~l  759 (796)
                      .+.+|+++.....|
T Consensus       209 ~~~~p~~~~~~~~l  222 (225)
T 2vq2_A          209 QANFPYSEELQTVL  222 (225)
T ss_dssp             HHHCTTCHHHHHHH
T ss_pred             HHhCCCCHHHHHHh
Confidence            88999888765544

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.42  E-value=3.3e-12  Score=132.06  Aligned_cols=242  Identities=9%  Similarity=-0.007  Sum_probs=203.4

Q ss_pred             CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc-hHHHHHHHHHHHHhCCCCchhHHHHHH
Q 036290          513 DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGA-YQRTKSIHPFVIKLGFNTEVYVASAVI  591 (796)
Q Consensus       513 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li  591 (796)
                      +...|..+...+.+.|++++|+..+++..... +-+...|..+-..+...|+ +++|...++.+.+.... +...|..+.
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g  173 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR  173 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence            34567778888889999999999999988763 3356777888888888996 99999999999998766 778899999


Q ss_pred             HHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc-cCCH
Q 036290          592 DAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSH-KGLV  667 (796)
Q Consensus       592 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~-~g~~  667 (796)
                      .++...|++++|+..|++.+..  .+...|..+..++...|++++|+..++++.+  +.| +...|+.+..++.. .|..
T Consensus       174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~  251 (382)
T 2h6f_A          174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYN  251 (382)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcc
Confidence            9999999999999999777654  4888999999999999999999999999999  667 67789989888888 6665


Q ss_pred             HHH-----HHHHHHhHhhcCCCCC-chHHHHHHHHHHhcC--ChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-----
Q 036290          668 DKG-----CLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNG--YLEDAKHVIEIMPFQP-SPTVYRSLLSGCRIHG-----  733 (796)
Q Consensus       668 ~~A-----~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g-----  733 (796)
                      ++|     +..++++.   .+.|+ ...|..+..++.+.|  ++++|.+.++++...| +...+..++.++.+.|     
T Consensus       252 ~eA~~~~el~~~~~Al---~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~  328 (382)
T 2h6f_A          252 DRAVLEREVQYTLEMI---KLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCD  328 (382)
T ss_dssp             SHHHHHHHHHHHHHHH---HHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred             hHHHHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccc
Confidence            777     58888887   45777 778889999999988  6899999998885555 4577888998988764     


Q ss_pred             ---C-hHHHHHHHHHH-HccCCCCCcceEEecC
Q 036290          734 ---N-KELGEWASEKL-LLLLPKNDAAHVLLSK  761 (796)
Q Consensus       734 ---~-~~~A~~~~~~~-~~~~p~~~~~~~~l~~  761 (796)
                         + .++|+++++++ .+++|.....|..++.
T Consensus       329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~  361 (382)
T 2h6f_A          329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGR  361 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence               2 58999999999 9999999999887765

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.42  E-value=5.2e-12  Score=125.72  Aligned_cols=224  Identities=9%  Similarity=-0.080  Sum_probs=163.3

Q ss_pred             cCChhHHHHHHHHHHHcCCC---CCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 036290          527 QGHNHEAVTIFHSLVEAGEK---PDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGA  603 (796)
Q Consensus       527 ~~~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  603 (796)
                      .|++++|+..|+++.+....   .+..++..+...+...|+++.|...++.+.+.... +...+..+...|...|++++|
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A   96 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAA   96 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHH
Confidence            46677777777777665321   13455666677777778888888888777776543 567777788888888888888


Q ss_pred             HHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhc
Q 036290          604 RMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQY  681 (796)
Q Consensus       604 ~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~  681 (796)
                      .+.+++.+..  .+...+..+...|...|++++|...++++.+  ..|+.......+..+...|++++|...+++.... 
T Consensus        97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-  173 (275)
T 1xnf_A           97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-  173 (275)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence            8888665542  3677888888888889999999999988888  5565555555555566778899999998877744 


Q ss_pred             CCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcc
Q 036290          682 GMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS-----PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAA  755 (796)
Q Consensus       682 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  755 (796)
                       ..++...+ .++..+...++.++|.+.+++. ...|+     ..+|..+...+...|++++|...++++++.+|++...
T Consensus       174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  251 (275)
T 1xnf_A          174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE  251 (275)
T ss_dssp             -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred             -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence             22333333 4777777888888888888876 33332     4677888888888999999999999999998877654


Q ss_pred             e
Q 036290          756 H  756 (796)
Q Consensus       756 ~  756 (796)
                      +
T Consensus       252 ~  252 (275)
T 1xnf_A          252 H  252 (275)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.41  E-value=1.2e-11  Score=132.31  Aligned_cols=341  Identities=10%  Similarity=0.018  Sum_probs=212.9

Q ss_pred             HHHHHHHHhCCCCChhhHHHHHHHHHhcC-----CchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcH---HHHHHH
Q 036290          399 EMAHSVFDNVSYKNITTWNELLSGYCFNC-----CDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQ---QMVGQI  470 (796)
Q Consensus       399 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~  470 (796)
                      ++|...|++..+.+...+..+...+...+     ++++|+.+|++..+.|...   .+..+-..+...+..   ..+.+.
T Consensus        55 ~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~  131 (452)
T 3e4b_A           55 KQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQ  131 (452)
T ss_dssp             ----------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHH
Confidence            56666665555444445555555444443     5567777777776655433   222333333332222   234444


Q ss_pred             HHHHHHhCCCCCchhHhHHHHHHHhcCCcch----HHHHHhcCCCCCHhhHHHHHHHHHHcC---ChhHHHHHHHHHHHc
Q 036290          471 HGAIIKTGFSSCGYICSSLIKSYVNFGQLDN----SFEFSNGAERLDMASWGAMMSALVHQG---HNHEAVTIFHSLVEA  543 (796)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~  543 (796)
                      +....+.|   ++.....|...|...+.++.    +..+++.....++..+..+...|...|   +.++|+..|++..+.
T Consensus       132 ~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~  208 (452)
T 3e4b_A          132 ISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSR  208 (452)
T ss_dssp             HHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHC
Confidence            44444444   35566677777777775444    445566666666668888888888888   889999999999888


Q ss_pred             CCCCCHHHHHHHHHHHhcc----CchHHHHHHHHHHHHhCCCCchhHHHHHHHH-H--HhcCCHHHHHHHHhccCCCCCh
Q 036290          544 GEKPDEYILGTILNSCAAI----GAYQRTKSIHPFVIKLGFNTEVYVASAVIDA-Y--AKCGDIKGARMAFDQSFNSNDV  616 (796)
Q Consensus       544 g~~p~~~t~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~  616 (796)
                      | .++...+..+-..|...    ++.++|.+.++... .   -+...+..+..+ |  ...+++++|.+.|++.....+.
T Consensus       209 g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~  283 (452)
T 3e4b_A          209 G-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQP  283 (452)
T ss_dssp             T-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCH
T ss_pred             C-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCH
Confidence            7 55555545555556554    68899999998877 3   356666777766 4  5689999999999888877888


Q ss_pred             hHHHHHHHHHHhcC-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHhhcCCCCCc
Q 036290          617 IVYNTLIMAYAHHG-----LVSEAMEIFDKMKLANLQPSQATFVSVMSACSH----KGLVDKGCLLFKSMDSQYGMQPSP  687 (796)
Q Consensus       617 ~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~  687 (796)
                      ..+..|...|. .|     ++++|.+.|++.. .|   +...+..|...|..    ..++++|..+|++..+. |   ++
T Consensus       284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g---~~  354 (452)
T 3e4b_A          284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN-G---QN  354 (452)
T ss_dssp             HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT-T---CT
T ss_pred             HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh-C---hH
Confidence            88888888887 45     8999999998887 32   55566666666655    34899999999988743 3   35


Q ss_pred             hHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHH--HHHHHhcCChHHHHHHHHHHHccCCCCCcceEEe
Q 036290          688 DCYGCLVDMLSR----NGYLEDAKHVIEIMPFQPSPTVYRSL--LSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLL  759 (796)
Q Consensus       688 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  759 (796)
                      .....|..+|..    ..+.++|..+++......+...-..+  +......++..+|..+.++..+..|.....-+.|
T Consensus       355 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l  432 (452)
T 3e4b_A          355 SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAARGTLAQSTLQL  432 (452)
T ss_dssp             THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHC----CCC
T ss_pred             HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccccchhHHHH
Confidence            566677777764    45899999999987323333332222  2223344577788888888777655543333333

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.41  E-value=1.4e-12  Score=127.19  Aligned_cols=201  Identities=11%  Similarity=0.080  Sum_probs=141.6

Q ss_pred             HHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCC
Q 036290          554 TILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGL  631 (796)
Q Consensus       554 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~  631 (796)
                      .+...+...|+++.|...++.+.+.... +...+..+...|...|++++|.+.+++.+..  .+...+..+...+...|+
T Consensus        28 ~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  106 (243)
T 2q7f_A           28 QQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEM  106 (243)
T ss_dssp             --------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcc
Confidence            3333344444444444444444432222 3445555566666666666666666444332  356777788888888999


Q ss_pred             hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCChHHHHHH
Q 036290          632 VSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP-SPDCYGCLVDMLSRNGYLEDAKHV  709 (796)
Q Consensus       632 ~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~  709 (796)
                      +++|.+.++++.+.  .| +...+..+...+...|++++|..+++++...   .| +...+..++.++.+.|++++|.+.
T Consensus       107 ~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~  181 (243)
T 2q7f_A          107 YKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL---NENDTEARFQFGMCLANEGMLDEALSQ  181 (243)
T ss_dssp             HHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999998884  34 6677888888899999999999999998844   34 477888899999999999999999


Q ss_pred             HHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEec
Q 036290          710 IEIM-PFQ-PSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLS  760 (796)
Q Consensus       710 ~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~  760 (796)
                      ++++ ... .+..+|..+..++...|++++|...++++++.+|+++.++..++
T Consensus       182 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~  234 (243)
T 2q7f_A          182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK  234 (243)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence            9887 333 35678899999999999999999999999999999888765543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.40  E-value=5.8e-12  Score=120.07  Aligned_cols=193  Identities=15%  Similarity=0.106  Sum_probs=97.2

Q ss_pred             HhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 036290          514 MASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDA  593 (796)
Q Consensus       514 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  593 (796)
                      ...+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...++...+..+.            
T Consensus         5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~------------   71 (217)
T 2pl2_A            5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR------------   71 (217)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------
Confidence            3344555555555566666666665555431 223333444444444444444444444444443322            


Q ss_pred             HHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhc-----------CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 036290          594 YAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHH-----------GLVSEAMEIFDKMKLANLQP-SQATFVSVMSAC  661 (796)
Q Consensus       594 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~  661 (796)
                                           +...+..+...+...           |++++|+..+++..+  +.| +...+..+...+
T Consensus        72 ---------------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~  128 (217)
T 2pl2_A           72 ---------------------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVY  128 (217)
T ss_dssp             ---------------------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred             ---------------------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHH
Confidence                                 333444444444444           666666666666666  445 344555566666


Q ss_pred             hccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 036290          662 SHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGE  739 (796)
Q Consensus       662 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~  739 (796)
                      ...|++++|+..|+++.+. .  .++..+..+..+|...|++++|.+.+++. ...| +...+..+...+...|++++|+
T Consensus       129 ~~~g~~~~A~~~~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~  205 (217)
T 2pl2_A          129 ALLGERDKAEASLKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAA  205 (217)
T ss_dssp             HHTTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------
T ss_pred             HHcCChHHHHHHHHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHH
Confidence            6666666666666666644 3  45566666666666666666666666665 3333 3455666666666666666666


Q ss_pred             HHHHHH
Q 036290          740 WASEKL  745 (796)
Q Consensus       740 ~~~~~~  745 (796)
                      ..++++
T Consensus       206 ~~~~~~  211 (217)
T 2pl2_A          206 RAAALE  211 (217)
T ss_dssp             ------
T ss_pred             HHHHHH
Confidence            666554

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.39  E-value=1e-11  Score=118.38  Aligned_cols=195  Identities=12%  Similarity=0.021  Sum_probs=129.3

Q ss_pred             CCCchhHhHHHHHHHhcCCcchHHHHHhcCCC---CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036290          480 SSCGYICSSLIKSYVNFGQLDNSFEFSNGAER---LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTIL  556 (796)
Q Consensus       480 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll  556 (796)
                      |++...+..+...+...|++++|...|+...+   .+...|..+...+.+.|++++|...|++..+.. +.+...+..+-
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg   80 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS   80 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence            67888999999999999999999999998765   467789999999999999999999999998763 33456666666


Q ss_pred             HHHhcc-----------CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHH
Q 036290          557 NSCAAI-----------GAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMA  625 (796)
Q Consensus       557 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~  625 (796)
                      ..+...           |++++|...++...+..+                                 .+...|..+...
T Consensus        81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P---------------------------------~~~~~~~~lg~~  127 (217)
T 2pl2_A           81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP---------------------------------RYAPLHLQRGLV  127 (217)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT---------------------------------TCHHHHHHHHHH
T ss_pred             HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc---------------------------------ccHHHHHHHHHH
Confidence            666665           444444444444443322                                 245556666666


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChH
Q 036290          626 YAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLE  704 (796)
Q Consensus       626 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~  704 (796)
                      +...|++++|+..|++..+..  .+...+..+..++...|++++|+..|+++.+   ..|+ ...+..+..++.+.|+++
T Consensus       128 ~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~  202 (217)
T 2pl2_A          128 YALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALE---QAPKDLDLRVRYASALLLKGKAE  202 (217)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTC-----
T ss_pred             HHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHH
Confidence            777777777777777777654  5566666677777777777777777777763   3454 566667777777777777


Q ss_pred             HHHHHHHhC
Q 036290          705 DAKHVIEIM  713 (796)
Q Consensus       705 ~A~~~~~~~  713 (796)
                      +|++.+++.
T Consensus       203 ~A~~~~~~~  211 (217)
T 2pl2_A          203 EAARAAALE  211 (217)
T ss_dssp             ---------
T ss_pred             HHHHHHHHH
Confidence            777776654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.38  E-value=7.5e-11  Score=115.55  Aligned_cols=194  Identities=8%  Similarity=-0.058  Sum_probs=127.9

Q ss_pred             chhHhHHHHHHHhcCCcchHHHHHhcCCC---CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036290          483 GYICSSLIKSYVNFGQLDNSFEFSNGAER---LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSC  559 (796)
Q Consensus       483 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~  559 (796)
                      ...+..+...+...|++++|.+.++.+.+   .+...|..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~  115 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence            56788889999999999999999988764   467788999999999999999999999998763 33555666666666


Q ss_pred             hccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036290          560 AAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIF  639 (796)
Q Consensus       560 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  639 (796)
                      ...|++++|.++++.+.+.+..|                               .+...+..+...+...|++++|.+.+
T Consensus       116 ~~~g~~~~A~~~~~~~~~~~~~~-------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~  164 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQDTLYP-------------------------------ERSRVFENLGLVSLQMKKPAQAKEYF  164 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTTCTTCT-------------------------------THHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHhCccCc-------------------------------ccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            66666666666665554421112                               12334445555555566666666666


Q ss_pred             HHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          640 DKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       640 ~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      +++.+.  .| +...+..+...+...|++++|...++++.   ...|+ ...+..+..++.+.|++++|.+.++++
T Consensus       165 ~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~  235 (252)
T 2ho1_A          165 EKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFA---QGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL  235 (252)
T ss_dssp             HHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            665552  23 34555556666666666666666666655   23333 445555666666666666666666655

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.37  E-value=3e-11  Score=118.82  Aligned_cols=207  Identities=7%  Similarity=-0.021  Sum_probs=109.8

Q ss_pred             hcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCC--C----C----HhhHHHHHHHHHHc
Q 036290          458 CCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAER--L----D----MASWGAMMSALVHQ  527 (796)
Q Consensus       458 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~li~~~~~~  527 (796)
                      +...|++++|...++.+.+..  .+...+..+..+|...|++++|.+.++...+  |    +    ...|..+...+...
T Consensus        15 ~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~   92 (258)
T 3uq3_A           15 FYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKL   92 (258)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHc
Confidence            333344444444444443333  3333444444444444444444444433322  1    0    34555566666666


Q ss_pred             CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 036290          528 GHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAF  607 (796)
Q Consensus       528 ~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  607 (796)
                      |++++|...|++....  .|+.       ..+...|+++.|...++.+.....                           
T Consensus        93 ~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~---------------------------  136 (258)
T 3uq3_A           93 GDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNP---------------------------  136 (258)
T ss_dssp             TCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCH---------------------------
T ss_pred             ccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCc---------------------------
Confidence            6677777666666554  2332       123333444555554444443211                           


Q ss_pred             hccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC
Q 036290          608 DQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS  686 (796)
Q Consensus       608 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~  686 (796)
                            .+...+..+...+...|++++|...+++..+  ..| +..++..+...+...|++++|...++++.+.   .|+
T Consensus       137 ------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~  205 (258)
T 3uq3_A          137 ------EKAEEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK---DPN  205 (258)
T ss_dssp             ------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT
T ss_pred             ------chHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CHH
Confidence                  1334455566666666666666666666665  233 4555666666666677777777777666632   344


Q ss_pred             -chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          687 -PDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       687 -~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                       ...+..+..++.+.|++++|.+.+++.
T Consensus       206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a  233 (258)
T 3uq3_A          206 FVRAYIRKATAQIAVKEYASALETLDAA  233 (258)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence             556666667777777777777666665

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.37  E-value=1e-11  Score=123.51  Aligned_cols=219  Identities=9%  Similarity=-0.097  Sum_probs=145.4

Q ss_pred             hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 036290          515 ASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAY  594 (796)
Q Consensus       515 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  594 (796)
                      ..|..+...+...|++++|...|++..+.. +.+...+..+...+...|+++.|...++.+.+.... +...+..+..+|
T Consensus        44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~  121 (275)
T 1xnf_A           44 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIAL  121 (275)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc-ccHHHHHHHHHH
Confidence            345555666666666777777776666542 334566666666777777777777777776665433 456677777778


Q ss_pred             HhcCCHHHHHHHHhccCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 036290          595 AKCGDIKGARMAFDQSFNS-NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLL  673 (796)
Q Consensus       595 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~  673 (796)
                      ...|++++|...+++.+.. |+.......+..+...|++++|...+++..... +++...+ .++..+...++.++|...
T Consensus       122 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~  199 (275)
T 1xnf_A          122 YYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMER  199 (275)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHH
Confidence            8888888888777655443 333334444445566788999999998777642 2343333 466677778888889988


Q ss_pred             HHHhHhhcCCCCC-----chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 036290          674 FKSMDSQYGMQPS-----PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVYRSLLSGCRIHGNKELGEWAS  742 (796)
Q Consensus       674 ~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~  742 (796)
                      ++.+.   ...|+     ...+..++.++.+.|++++|.+.++++ ...|+.  +.....++...|++++|++.+
T Consensus       200 ~~~~~---~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          200 LKADA---TDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHC---CSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred             HHHHh---cccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence            88876   33442     577888899999999999999999888 556643  223355666778888887765

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.37  E-value=3.7e-11  Score=119.32  Aligned_cols=239  Identities=9%  Similarity=-0.018  Sum_probs=177.9

Q ss_pred             HhHHHHHHHhcCCcchHHHHHhcCCC---CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHh
Q 036290          486 CSSLIKSYVNFGQLDNSFEFSNGAER---LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPD--EYILGTILNSCA  560 (796)
Q Consensus       486 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~  560 (796)
                      .......+...|++++|...|+...+   .+...+..+...+...|++++|...+++..+.+..|+  ...|..+...+.
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~   85 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM   85 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence            34455566666677777666665543   2444677777788888888888888888876432222  234777888888


Q ss_pred             ccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHH
Q 036290          561 AIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEI  638 (796)
Q Consensus       561 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~  638 (796)
                      ..|+++.|...++...+.... +...+..+...|...|++++|.+.+++.+..  .+...|..+...+...+++++|.+.
T Consensus        86 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  164 (272)
T 3u4t_A           86 KKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS  164 (272)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999888886554 5678899999999999999999999877765  3667777777344445699999999


Q ss_pred             HHHHHHCCCCC-CHHHHHHHHHHHhccCC---HHHHHHHHHHhHhhcCCCCCc------hHHHHHHHHHHhcCChHHHHH
Q 036290          639 FDKMKLANLQP-SQATFVSVMSACSHKGL---VDKGCLLFKSMDSQYGMQPSP------DCYGCLVDMLSRNGYLEDAKH  708 (796)
Q Consensus       639 ~~~m~~~g~~p-~~~t~~~ll~~~~~~g~---~~~A~~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~  708 (796)
                      ++++.+  ..| +...+..+...+...|+   +++|...++++.+...-.|+.      .+|..+...|.+.|++++|.+
T Consensus       165 ~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  242 (272)
T 3u4t_A          165 FVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA  242 (272)
T ss_dssp             HHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            999998  566 46677777788888887   888999998887554334542      578889999999999999999


Q ss_pred             HHHhC-CCCCC-HHHHHHHHH
Q 036290          709 VIEIM-PFQPS-PTVYRSLLS  727 (796)
Q Consensus       709 ~~~~~-~~~p~-~~~~~~l~~  727 (796)
                      .+++. ...|+ ...+..+..
T Consensus       243 ~~~~al~~~p~~~~a~~~l~~  263 (272)
T 3u4t_A          243 AWKNILALDPTNKKAIDGLKM  263 (272)
T ss_dssp             HHHHHHHHCTTCHHHHHHHC-
T ss_pred             HHHHHHhcCccHHHHHHHhhh
Confidence            99988 45564 444444433

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.35  E-value=1e-10  Score=125.06  Aligned_cols=147  Identities=14%  Similarity=0.065  Sum_probs=62.6

Q ss_pred             hhcCCCH---HHHHHHHhhcCCCCcchHHHHHHHHHhCC-----CccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCC
Q 036290          291 YIKSSGM---DYAFKVFERMADKDVISWNTLFGGFSENK-----NPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLD  362 (796)
Q Consensus       291 ~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~  362 (796)
                      |...|+.   ++|...|++..+.+...+..+...+...+     +.++|+..|++..+.|...   .+..+-..+...+.
T Consensus        45 y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~  121 (452)
T 3e4b_A           45 QVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPH  121 (452)
T ss_dssp             --------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGG
T ss_pred             HHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCC
Confidence            3344555   66666666665555555555555444444     5567777777776655322   33333333333222


Q ss_pred             h---HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC----hHHHHHHHHhCCCCChhhHHHHHHHHHhcC---CchHH
Q 036290          363 L---DLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGA----VEMAHSVFDNVSYKNITTWNELLSGYCFNC---CDADV  432 (796)
Q Consensus       363 ~---~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a  432 (796)
                      .   ..+.+.+....+.|.   ......|...|...+.    .+.+..+++.....+...+..+...|...|   +.++|
T Consensus       122 ~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A  198 (452)
T 3e4b_A          122 SFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAEL  198 (452)
T ss_dssp             GCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHH
Confidence            2   233344444444442   3334445555555553    333444455555555556666666666666   66666


Q ss_pred             HHHHHHHHhcC
Q 036290          433 LKTFCNIWESG  443 (796)
Q Consensus       433 ~~~~~~m~~~g  443 (796)
                      +..|++..+.|
T Consensus       199 ~~~~~~aa~~g  209 (452)
T 3e4b_A          199 LKQMEAGVSRG  209 (452)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHCC
Confidence            66666665554

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.34  E-value=8.9e-12  Score=115.48  Aligned_cols=170  Identities=19%  Similarity=0.146  Sum_probs=144.7

Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 036290          583 EVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMS  659 (796)
Q Consensus       583 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~  659 (796)
                      +..+|..+...|...|++++|++.|++.+..  .+...|..+...|...|++++|...+++...  ..| +...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHHH
Confidence            5667888888888999999999998776653  4778899999999999999999999999988  445 5566777778


Q ss_pred             HHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChH
Q 036290          660 ACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKE  736 (796)
Q Consensus       660 ~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~  736 (796)
                      .+...++++.|...+++...   ..|+ ...+..+..++.+.|++++|++.+++. ...| +..+|..+..++.+.|+++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~  158 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIA---LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD  158 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence            88999999999999999884   3555 778889999999999999999999988 4455 5678999999999999999


Q ss_pred             HHHHHHHHHHccCCCCCcceE
Q 036290          737 LGEWASEKLLLLLPKNDAAHV  757 (796)
Q Consensus       737 ~A~~~~~~~~~~~p~~~~~~~  757 (796)
                      +|+..++++++++|+++..+.
T Consensus       159 ~A~~~~~~al~~~p~~a~~~l  179 (184)
T 3vtx_A          159 EAVKYFKKALEKEEKKAKYEL  179 (184)
T ss_dssp             HHHHHHHHHHHTTHHHHHHCS
T ss_pred             HHHHHHHHHHhCCccCHHHHH
Confidence            999999999999998766543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.32  E-value=1.4e-10  Score=111.19  Aligned_cols=203  Identities=12%  Similarity=0.005  Sum_probs=131.2

Q ss_pred             CCCchhHhHHHHHHHhcCCcchHHHHHhcCCC---CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036290          480 SSCGYICSSLIKSYVNFGQLDNSFEFSNGAER---LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTIL  556 (796)
Q Consensus       480 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll  556 (796)
                      +.+...+..+...+...|++++|.+.++.+.+   .+...|..+...+...|++++|.+.+++..+.. +.+..++..+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~   83 (225)
T 2vq2_A            5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG   83 (225)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence            33567788899999999999999999987654   457788899999999999999999999987753 33455566666


Q ss_pred             HHHhcc-CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHH
Q 036290          557 NSCAAI-GAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEA  635 (796)
Q Consensus       557 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  635 (796)
                      ..+... |+++.|...++.+.+.+..|+                               +...+..+...+...|++++|
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------------------------------~~~~~~~l~~~~~~~~~~~~A  132 (225)
T 2vq2_A           84 WFLCGRLNRPAESMAYFDKALADPTYPT-------------------------------PYIANLNKGICSAKQGQFGLA  132 (225)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHTSTTCSC-------------------------------HHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHcCcCCcc-------------------------------hHHHHHHHHHHHHHcCCHHHH
Confidence            666666 666666666665554211111                               234445555555566666666


Q ss_pred             HHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC--CchHHHHHHHHHHhcCChHHHHHHHHh
Q 036290          636 MEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP--SPDCYGCLVDMLSRNGYLEDAKHVIEI  712 (796)
Q Consensus       636 ~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~  712 (796)
                      ...++++.+  ..| +...+..+...+...|++++|..+++++...   .|  +...+..+...+...|+.++|..+++.
T Consensus       133 ~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  207 (225)
T 2vq2_A          133 EAYLKRSLA--AQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSR---VEVLQADDLLLGWKIAKALGNAQAAYEYEAQ  207 (225)
T ss_dssp             HHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHH--hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            666666555  233 3455555666666666666666666666532   23  344555555556666666666666665


Q ss_pred             C-CCCCCH
Q 036290          713 M-PFQPSP  719 (796)
Q Consensus       713 ~-~~~p~~  719 (796)
                      + ...|+.
T Consensus       208 ~~~~~p~~  215 (225)
T 2vq2_A          208 LQANFPYS  215 (225)
T ss_dssp             HHHHCTTC
T ss_pred             HHHhCCCC
Confidence            5 234443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.31  E-value=4.2e-10  Score=111.70  Aligned_cols=218  Identities=10%  Similarity=-0.044  Sum_probs=164.1

Q ss_pred             chhHhHHHHHHHhcCCcchHHHHHhcCCCC-CHhhHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036290          483 GYICSSLIKSYVNFGQLDNSFEFSNGAERL-DMASWGAMMSALVH----QGHNHEAVTIFHSLVEAGEKPDEYILGTILN  557 (796)
Q Consensus       483 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  557 (796)
                      +..+..+...|...|++++|.+.|+...++ +...+..+...|..    .+++++|...|++..+.+   +...+..+-.
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~   82 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGN   82 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence            344455555666666666666666554432 45566667777777    788888888888877765   5666777777


Q ss_pred             HHhc----cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhccCCCCChhHHHHHHHHHHh-
Q 036290          558 SCAA----IGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAK----CGDIKGARMAFDQSFNSNDVIVYNTLIMAYAH-  628 (796)
Q Consensus       558 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~-  628 (796)
                      .+..    .+++++|...++...+.+   +...+..+...|..    .+++++|.+.+++.+...+...+..+...|.. 
T Consensus        83 ~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~  159 (273)
T 1ouv_A           83 LYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAG  159 (273)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcC
Confidence            7777    888888888888877765   66777788888888    88888888888777777777788888888887 


Q ss_pred             ---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHh--
Q 036290          629 ---HGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSH----KGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSR--  699 (796)
Q Consensus       629 ---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~--  699 (796)
                         .+++++|...|++..+.+   +...+..+...+..    .+++++|...+++..+.   .| ...+..+..+|..  
T Consensus       160 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---~~-~~a~~~l~~~~~~g~  232 (273)
T 1ouv_A          160 RGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL---EN-GGGCFNLGAMQYNGE  232 (273)
T ss_dssp             SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT---TC-HHHHHHHHHHHHTTS
T ss_pred             CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC---CC-HHHHHHHHHHHHcCC
Confidence               889999999999888753   45667777777877    88999999999888743   22 6677778888888  


Q ss_pred             --cCChHHHHHHHHhC
Q 036290          700 --NGYLEDAKHVIEIM  713 (796)
Q Consensus       700 --~g~~~~A~~~~~~~  713 (796)
                        .|++++|.+.+++.
T Consensus       233 ~~~~~~~~A~~~~~~a  248 (273)
T 1ouv_A          233 GVTRNEKQAIENFKKG  248 (273)
T ss_dssp             SSSCCSTTHHHHHHHH
T ss_pred             CcccCHHHHHHHHHHH
Confidence              88999999888876

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.30  E-value=2.6e-11  Score=128.38  Aligned_cols=295  Identities=14%  Similarity=0.025  Sum_probs=171.9

Q ss_pred             hhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcc-c--HHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHH
Q 036290          413 ITTWNELLSGYCFNCCDADVLKTFCNIWESGVEV-N--GCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSL  489 (796)
Q Consensus       413 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  489 (796)
                      ...+......+...|++++|...|++..+.+... .  ...+..+...+...|+++.|...++...+..-          
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~----------   78 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR----------   78 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----------
Confidence            3445556667777788888888877777642111 0  23455555566666666666666665543210          


Q ss_pred             HHHHHhcCCcchHHHHHhcCCC--CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhcc
Q 036290          490 IKSYVNFGQLDNSFEFSNGAER--LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGE-KPD----EYILGTILNSCAAI  562 (796)
Q Consensus       490 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~  562 (796)
                                        ....  .....+..+...+...|++++|...+++..+... .++    ..++..+...+...
T Consensus        79 ------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~  140 (406)
T 3sf4_A           79 ------------------TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK  140 (406)
T ss_dssp             ------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             ------------------hccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHc
Confidence                              0000  0122344444555555555555555554432100 011    22444555555556


Q ss_pred             Cc--------------------hHHHHHHHHHHHHh----CCC-CchhHHHHHHHHHHhcCCHHHHHHHHhccCCC----
Q 036290          563 GA--------------------YQRTKSIHPFVIKL----GFN-TEVYVASAVIDAYAKCGDIKGARMAFDQSFNS----  613 (796)
Q Consensus       563 ~~--------------------~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----  613 (796)
                      |+                    ++.|...+....+.    +.. .....+..+...|...|++++|...+++.+..    
T Consensus       141 g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  220 (406)
T 3sf4_A          141 GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF  220 (406)
T ss_dssp             HHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT
T ss_pred             CCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc
Confidence            66                    66666665554431    111 12335566677777777777777777554432    


Q ss_pred             CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCC
Q 036290          614 ND----VIVYNTLIMAYAHHGLVSEAMEIFDKMKLA----NLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQ  684 (796)
Q Consensus       614 ~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~  684 (796)
                      ++    ...+..+...|...|++++|...+++..+.    +..+ ...++..+...+...|++++|...+++......-.
T Consensus       221 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  300 (406)
T 3sf4_A          221 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL  300 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence            11    236777778888888888888888887652    1111 14466777788888899999988888876432112


Q ss_pred             CC----chHHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCh
Q 036290          685 PS----PDCYGCLVDMLSRNGYLEDAKHVIEIM-------PFQP-SPTVYRSLLSGCRIHGNK  735 (796)
Q Consensus       685 p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~  735 (796)
                      ++    ..++..+..+|.+.|++++|.+.+++.       +..+ ...++..+...+...|+.
T Consensus       301 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  363 (406)
T 3sf4_A          301 NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS  363 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence            22    556778888888899999988888776       1111 234566677777777765

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.30  E-value=4.8e-10  Score=113.36  Aligned_cols=219  Identities=11%  Similarity=0.042  Sum_probs=170.6

Q ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-------ccCch-------HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 036290          531 HEAVTIFHSLVEAGEKPDEYILGTILNSCA-------AIGAY-------QRTKSIHPFVIKLGFNTEVYVASAVIDAYAK  596 (796)
Q Consensus       531 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  596 (796)
                      ++|...|++..... +-+...|..+...+.       ..|++       ++|..+++...+.-.+-+...|..++..+.+
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            57778888876652 445566666666554       34765       8888888888873222356688899999999


Q ss_pred             cCCHHHHHHHHhccCCC-C-Chh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH-hccCCHHHHH
Q 036290          597 CGDIKGARMAFDQSFNS-N-DVI-VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSAC-SHKGLVDKGC  671 (796)
Q Consensus       597 ~g~~~~A~~~~~~~~~~-~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~-~~~g~~~~A~  671 (796)
                      .|++++|.++|++.+.. | +.. .|..++..+.+.|++++|..+|++..+.  .| +...|....... ...|++++|.
T Consensus       112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~  189 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAF  189 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred             cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999877765 3 344 8999999999999999999999999984  44 444454433332 2379999999


Q ss_pred             HHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 036290          672 LLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-P---FQP--SPTVYRSLLSGCRIHGNKELGEWASEK  744 (796)
Q Consensus       672 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~  744 (796)
                      .+|+++.+.   .|+ +..|..++..+.+.|++++|..+|++. .   +.|  ....|..++..+.+.|+.+.|..++++
T Consensus       190 ~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~  266 (308)
T 2ond_A          190 KIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR  266 (308)
T ss_dssp             HHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999844   454 788899999999999999999999998 2   355  356899999999999999999999999


Q ss_pred             HHccCCCCCcc
Q 036290          745 LLLLLPKNDAA  755 (796)
Q Consensus       745 ~~~~~p~~~~~  755 (796)
                      +++..|+++..
T Consensus       267 a~~~~p~~~~~  277 (308)
T 2ond_A          267 RFTAFREEYEG  277 (308)
T ss_dssp             HHHHTTTTTSS
T ss_pred             HHHHccccccc
Confidence            99999987654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.28  E-value=2.4e-08  Score=110.22  Aligned_cols=418  Identities=10%  Similarity=0.031  Sum_probs=263.8

Q ss_pred             CCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCC---hHHHHHHHHHHHHhC-CCCchhHH
Q 036290          310 KDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLD---LDLGLQLQCLALHCG-FLDEENVT  385 (796)
Q Consensus       310 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g-~~~~~~~~  385 (796)
                      .|..+|..+|..+.+.+.++.+..+|+.+... .+.....|..-+..-.+.++   .+.+.++|+...... ..|+...|
T Consensus        64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW  142 (679)
T 4e6h_A           64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW  142 (679)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred             CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence            37888999999988888999999999998876 23344455666666677777   888888888887754 24777788


Q ss_pred             HHHHHHHHhcCCh--------HHHHHHHHhCC------CC-ChhhHHHHHHHHHh---------cCCchHHHHHHHHHHh
Q 036290          386 SSLIYMFCRCGAV--------EMAHSVFDNVS------YK-NITTWNELLSGYCF---------NCCDADVLKTFCNIWE  441 (796)
Q Consensus       386 ~~ll~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~  441 (796)
                      ...+....+.++.        +...++|+...      ++ +...|...+.-...         .++.+.+..+|+....
T Consensus       143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~  222 (679)
T 4e6h_A          143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC  222 (679)
T ss_dssp             HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence            7777766655543        22345665422      22 33566666654332         2345667777777764


Q ss_pred             cCCcccHHHHH---HHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHh-------cCCC
Q 036290          442 SGVEVNGCTFF---YVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSN-------GAER  511 (796)
Q Consensus       442 ~g~~p~~~t~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-------~~~~  511 (796)
                      .....-..+|.   .+......    ..+.+++.+..                     ..++.|...+.       .+..
T Consensus       223 iP~~~~~~~w~~Y~~fe~~~~~----~~a~~~~~e~~---------------------~~y~~Ar~~~~e~~~~~~~l~r  277 (679)
T 4e6h_A          223 QPMDCLESMWQRYTQWEQDVNQ----LTARRHIGELS---------------------AQYMNARSLYQDWLNITKGLKR  277 (679)
T ss_dssp             SCCSSHHHHHHHHHHHHHHHCT----TTHHHHHHHHH---------------------HHHHHHHHHHHHHHHHTTTCCC
T ss_pred             CccHHHHHHHHHHHHHHHhcCc----chHHHHHHHhh---------------------HHHHHHHHHHHHHHHHHHhHhh
Confidence            22221223332   22222100    01111111100                     01111111111       0100


Q ss_pred             --------------C--------CHhhHHHHHHHHHHcC-------ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 036290          512 --------------L--------DMASWGAMMSALVHQG-------HNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAI  562 (796)
Q Consensus       512 --------------~--------~~~~~~~li~~~~~~~-------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~  562 (796)
                                    |        ....|...+.---..+       ..+.+..+|++.... ++-....|.....-+...
T Consensus       278 ~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~  356 (679)
T 4e6h_A          278 NLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEK  356 (679)
T ss_dssp             CCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHH
T ss_pred             ccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhc
Confidence                          0        0123444443322222       123345667777654 344667777777777778


Q ss_pred             CchHHHH-HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC------------C------------Chh
Q 036290          563 GAYQRTK-SIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS------------N------------DVI  617 (796)
Q Consensus       563 ~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------------~------------~~~  617 (796)
                      |+.+.|. ++++...... +.+...+...+....+.|+++.|.++|+..+..            |            ...
T Consensus       357 ~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~  435 (679)
T 4e6h_A          357 NTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTY  435 (679)
T ss_dssp             SCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHH
Confidence            8888886 8998887644 346667777888888899999999988766542            2            123


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHH
Q 036290          618 VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSH-KGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDM  696 (796)
Q Consensus       618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~  696 (796)
                      .|...+....+.|..+.|..+|.+..+.-..+....|...+..-.+ .++.+.|..+|+...+.+  .-++..+...++.
T Consensus       436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~f  513 (679)
T 4e6h_A          436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDF  513 (679)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHH
Confidence            6888888888899999999999999885101123344333222223 356999999999999663  2346667788888


Q ss_pred             HHhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceE
Q 036290          697 LSRNGYLEDAKHVIEIM-PFQP----SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHV  757 (796)
Q Consensus       697 ~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  757 (796)
                      ....|+.+.|..+|++. ...|    ....|...+.--.+.|+.+.+..+.+++.+..|+++..-.
T Consensus       514 e~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~  579 (679)
T 4e6h_A          514 LIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEE  579 (679)
T ss_dssp             HHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHH
Confidence            88999999999999997 3333    2367899999889999999999999999999998765443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.27  E-value=5.4e-11  Score=115.75  Aligned_cols=203  Identities=14%  Similarity=0.141  Sum_probs=124.0

Q ss_pred             hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 036290          515 ASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAY  594 (796)
Q Consensus       515 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  594 (796)
                      ..|..+...+...|++++|...|++..+.. +.+...+..+...+...|+++.|.+.++.+.+.... +...+..+...|
T Consensus        24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~  101 (243)
T 2q7f_A           24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVY  101 (243)
T ss_dssp             ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHH
Confidence            344445555555666666666666655432 334555555566666666666666666666655432 455666667777


Q ss_pred             HhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHH
Q 036290          595 AKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGC  671 (796)
Q Consensus       595 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~  671 (796)
                      ...|++++|.+.+++.+..  .+...+..+...+...|++++|...++++.+  ..| +...+..+...+...|++++|.
T Consensus       102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~  179 (243)
T 2q7f_A          102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVE--LNENDTEARFQFGMCLANEGMLDEAL  179 (243)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHcCCHHHHH
Confidence            7777777777777544432  3566777777788888888888888888777  334 5666777777888888888888


Q ss_pred             HHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHH
Q 036290          672 LLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS-PTVYRS  724 (796)
Q Consensus       672 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~  724 (796)
                      ..++++...   .|+ ..++..++.++.+.|++++|.+.++++ ...|+ ...+..
T Consensus       180 ~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  232 (243)
T 2q7f_A          180 SQFAAVTEQ---DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHA  232 (243)
T ss_dssp             HHHHHHHHH---CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHh---CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHH
Confidence            888887743   343 667778888888888888888888877 34443 334433

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.26  E-value=2.2e-10  Score=118.29  Aligned_cols=237  Identities=11%  Similarity=0.061  Sum_probs=164.7

Q ss_pred             HhHHHHHHHhcCCcchHHHHHhcCCC---CCHhhHHHHHHHHHHcCC-hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 036290          486 CSSLIKSYVNFGQLDNSFEFSNGAER---LDMASWGAMMSALVHQGH-NHEAVTIFHSLVEAGEKPDEYILGTILNSCAA  561 (796)
Q Consensus       486 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~  561 (796)
                      +..+...+...|++++|++.++....   .+...|+.+...+...|+ +++|+..|++..... +-+...|..+-.++..
T Consensus       100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~  178 (382)
T 2h6f_A          100 YDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEW  178 (382)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
Confidence            33444445555555555555554432   245556666666666665 777777777766552 3345566666666677


Q ss_pred             cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHh-cCChHHH---
Q 036290          562 IGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAH-HGLVSEA---  635 (796)
Q Consensus       562 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~-~g~~~~A---  635 (796)
                      .|+++.|...++.+.+.... +...|..+..++.+.|++++|+..+++.+..  .+...|+.+..++.. .|..++|   
T Consensus       179 ~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~  257 (382)
T 2h6f_A          179 LRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLE  257 (382)
T ss_dssp             HTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHH
Confidence            77777777777777766554 6677777788888888888888888666653  377888888888888 6665777   


Q ss_pred             --HHHHHHHHHCCCCC-CHHHHHHHHHHHhccC--CHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcC--------
Q 036290          636 --MEIFDKMKLANLQP-SQATFVSVMSACSHKG--LVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNG--------  701 (796)
Q Consensus       636 --~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g--~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--------  701 (796)
                        +..+++..+  +.| +...|..+...+...|  ++++|++.++++    ...|+ ...+..++.+|.+.|        
T Consensus       258 ~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~----~~~p~~~~al~~La~~~~~~~~~~~~~~~  331 (382)
T 2h6f_A          258 REVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL----QPSHSSPYLIAFLVDIYEDMLENQCDNKE  331 (382)
T ss_dssp             HHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH----TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred             HHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh----ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence              588888888  667 5667888888888888  689999988877    23455 778889999998874        


Q ss_pred             -ChHHHHHHHHhC--CCCCCH-HHHHHHHHHHH
Q 036290          702 -YLEDAKHVIEIM--PFQPSP-TVYRSLLSGCR  730 (796)
Q Consensus       702 -~~~~A~~~~~~~--~~~p~~-~~~~~l~~~~~  730 (796)
                       ..++|+++++++  ...|.. ..|..+...+.
T Consensus       332 ~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~  364 (382)
T 2h6f_A          332 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQ  364 (382)
T ss_dssp             HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence             258999999998  566754 45666666554

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.26  E-value=3.6e-11  Score=127.64  Aligned_cols=271  Identities=14%  Similarity=0.067  Sum_probs=170.7

Q ss_pred             HHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCc----hhHhHHHHHHHhcCCcchHHHHHhcCCC---------CCHh
Q 036290          449 CTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCG----YICSSLIKSYVNFGQLDNSFEFSNGAER---------LDMA  515 (796)
Q Consensus       449 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~  515 (796)
                      ..+..+-..+...|+++.|...++.+.+.+ +.+.    .++..+...|...|++++|...+++..+         ....
T Consensus        49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  127 (411)
T 4a1s_A           49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK  127 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence            344445556677788888888888777764 2222    3555666666666666666666554432         1223


Q ss_pred             hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhC-CCCchhHHHHHHHHH
Q 036290          516 SWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLG-FNTEVYVASAVIDAY  594 (796)
Q Consensus       516 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~  594 (796)
                      .+..+...|...|++++|...+++..+...                               +.+ .......+..+...|
T Consensus       128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~  176 (411)
T 4a1s_A          128 SSGNLGNTLKVMGRFDEAAICCERHLTLAR-------------------------------QLGDRLSEGRALYNLGNVY  176 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhhchHHHHHHHHHHHHHH
Confidence            445555555556666666665555432200                               000 001122344444555


Q ss_pred             HhcCC-----------------HHHHHHHHhccCCC--------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-
Q 036290          595 AKCGD-----------------IKGARMAFDQSFNS--------NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQ-  648 (796)
Q Consensus       595 ~~~g~-----------------~~~A~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-  648 (796)
                      ...|+                 +++|.+.+++.+..        .....+..+...|...|++++|...+++..+.... 
T Consensus       177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  256 (411)
T 4a1s_A          177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF  256 (411)
T ss_dssp             HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence            55555                 55555554332221        12346677778888888888888888887662110 


Q ss_pred             CC----HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----chHHHHHHHHHHhcCChHHHHHHHHhC-CC---C
Q 036290          649 PS----QATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS----PDCYGCLVDMLSRNGYLEDAKHVIEIM-PF---Q  716 (796)
Q Consensus       649 p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~  716 (796)
                      ++    ..++..+...+...|++++|...++++.....-..+    ..++..+..++...|++++|.+.+++. ..   .
T Consensus       257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  336 (411)
T 4a1s_A          257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL  336 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence            11    236777888899999999999999887743211111    567888999999999999999999887 11   1


Q ss_pred             CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 036290          717 PS----PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPK  751 (796)
Q Consensus       717 p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  751 (796)
                      ++    ..++..+...+...|++++|.+.+++++++.++
T Consensus       337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  375 (411)
T 4a1s_A          337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX  375 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred             CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence            12    357788888999999999999999999998764

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.25  E-value=1.9e-10  Score=118.04  Aligned_cols=135  Identities=13%  Similarity=-0.005  Sum_probs=95.2

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----c
Q 036290          617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLAN----LQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS----P  687 (796)
Q Consensus       617 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~  687 (796)
                      ..+..+...+...|++++|...+++..+..    ..+ ...++..+...+...|++++|...+++......-.++    .
T Consensus       184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  263 (338)
T 3ro2_A          184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA  263 (338)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence            355666677777777777777777765421    111 1235777778888889999999988887643211122    5


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhC-C---CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 036290          688 DCYGCLVDMLSRNGYLEDAKHVIEIM-P---FQPS----PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPK  751 (796)
Q Consensus       688 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  751 (796)
                      .++..+..++...|++++|.+.+++. .   ..++    ..++..+...+...|++++|...+++++++.++
T Consensus       264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            66778888999999999999998876 1   1112    347788888999999999999999999988765

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.22  E-value=2.8e-10  Score=105.25  Aligned_cols=172  Identities=17%  Similarity=0.082  Sum_probs=146.0

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 036290          584 VYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSA  660 (796)
Q Consensus       584 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~  660 (796)
                      ...+..+...+...|++++|...+++.+..  .+...+..+...+...|++++|...++++.+.  .| +...+..+...
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~   85 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLT   85 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence            345666778889999999999999776665  37788899999999999999999999999884  45 67778888899


Q ss_pred             HhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHH
Q 036290          661 CSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PF-QPSPTVYRSLLSGCRIHGNKELG  738 (796)
Q Consensus       661 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A  738 (796)
                      +...|++++|.+.++++...  .+.+...+..++.++...|++++|.+.++++ .. +.+...|..+...+...|++++|
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  163 (186)
T 3as5_A           86 YVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA  163 (186)
T ss_dssp             HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999999844  2334778889999999999999999999987 33 33567899999999999999999


Q ss_pred             HHHHHHHHccCCCCCcceEEe
Q 036290          739 EWASEKLLLLLPKNDAAHVLL  759 (796)
Q Consensus       739 ~~~~~~~~~~~p~~~~~~~~l  759 (796)
                      ...++++++.+|+++....++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~  184 (186)
T 3as5_A          164 LPHFKKANELDEGASVELALV  184 (186)
T ss_dssp             HHHHHHHHHHHHCCCGGGGGS
T ss_pred             HHHHHHHHHcCCCchhhHhhc
Confidence            999999999999888765443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.21  E-value=1.3e-10  Score=123.33  Aligned_cols=267  Identities=12%  Similarity=0.009  Sum_probs=179.7

Q ss_pred             hHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccH----HHHHHHHHHhcccCcHHHHHHHHHHHHHh----C-CCCCchh
Q 036290          415 TWNELLSGYCFNCCDADVLKTFCNIWESGVEVNG----CTFFYVVETCCRSENQQMVGQIHGAIIKT----G-FSSCGYI  485 (796)
Q Consensus       415 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~  485 (796)
                      .+..+...+...|++++|+..|++..+.+.. +.    ..+..+...+...|+++.|...++...+.    + .+.....
T Consensus        50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  128 (411)
T 4a1s_A           50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS  128 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence            4555667889999999999999999886322 22    46777888889999999999999988764    1 1234567


Q ss_pred             HhHHHHHHHhcCCcchHHHHHhcCCCC---------CHhhHHHHHHHHHHcCC-----------------hhHHHHHHHH
Q 036290          486 CSSLIKSYVNFGQLDNSFEFSNGAERL---------DMASWGAMMSALVHQGH-----------------NHEAVTIFHS  539 (796)
Q Consensus       486 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~-----------------~~~A~~~~~~  539 (796)
                      +..+...|...|++++|...+++..+.         ....+..+...|...|+                 +++|...+++
T Consensus       129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~  208 (411)
T 4a1s_A          129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE  208 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence            888999999999999999988765431         22355566666666666                 5555555554


Q ss_pred             HHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC----C
Q 036290          540 LVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGF-NTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS----N  614 (796)
Q Consensus       540 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~  614 (796)
                      ..+..                               ...+- ......+..+...|...|++++|.+.+++.+..    +
T Consensus       209 al~~~-------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  257 (411)
T 4a1s_A          209 NLKLM-------------------------------RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG  257 (411)
T ss_dssp             HHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHH-------------------------------HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence            42210                               00000 011234455556666666666666666444332    1


Q ss_pred             C----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-C----CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC
Q 036290          615 D----VIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQ-P----SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP  685 (796)
Q Consensus       615 ~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p----~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p  685 (796)
                      +    ...+..+...|...|++++|...+++..+.... .    ...++..+...+...|++++|..++++......-.+
T Consensus       258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  337 (411)
T 4a1s_A          258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG  337 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence            1    236677777788888888888888777652110 0    135677777888889999999998888764311111


Q ss_pred             C----chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          686 S----PDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       686 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      +    ..++..+..+|.+.|++++|.+.+++.
T Consensus       338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  369 (411)
T 4a1s_A          338 DRIGEARACWSLGNAHSAIGGHERALKYAEQH  369 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            1    457778888999999999999988876

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.21  E-value=4.3e-10  Score=117.92  Aligned_cols=231  Identities=8%  Similarity=-0.027  Sum_probs=169.3

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHhccCchHHHHHHHHHHHHhC--CC----CchhHHH
Q 036290          520 MMSALVHQGHNHEAVTIFHSLVEAG-EKPD----EYILGTILNSCAAIGAYQRTKSIHPFVIKLG--FN----TEVYVAS  588 (796)
Q Consensus       520 li~~~~~~~~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~----~~~~~~~  588 (796)
                      ....+...|++++|...+++..+.- -.++    ..++..+-..+...|+++.|...+....+..  ..    ....+++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            3445667788888888888775431 0122    2456666677777888888888877766531  11    1234677


Q ss_pred             HHHHHHHhcCCHHHHHHHHhccCCC----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHH
Q 036290          589 AVIDAYAKCGDIKGARMAFDQSFNS----N----DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLA----NLQP-SQATFV  655 (796)
Q Consensus       589 ~li~~~~~~g~~~~A~~~~~~~~~~----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~  655 (796)
                      .+...|...|++++|.+.+++.+..    +    ...++..+...|...|++++|.+.+++..+.    +..| ...++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            7788888899999998888665542    2    2247788899999999999999999988762    2324 456688


Q ss_pred             HHHHHHhccCCHHHHHHHHHHhHhhcCCCCC---chHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 036290          656 SVMSACSHKGLVDKGCLLFKSMDSQYGMQPS---PDCYGCLVDMLSRNGY---LEDAKHVIEIMPFQPSP-TVYRSLLSG  728 (796)
Q Consensus       656 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~l~~~  728 (796)
                      .+...+...|++++|...+++......-..+   ...+..+...+...|+   +++|..++++.+..|+. ..+..+...
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~  348 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY  348 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            8889999999999999999988743211112   3346678888999999   99999999999655543 567788899


Q ss_pred             HHhcCChHHHHHHHHHHHccCC
Q 036290          729 CRIHGNKELGEWASEKLLLLLP  750 (796)
Q Consensus       729 ~~~~g~~~~A~~~~~~~~~~~p  750 (796)
                      |...|++++|...+++++++..
T Consensus       349 y~~~g~~~~A~~~~~~al~~~~  370 (383)
T 3ulq_A          349 YHERKNFQKASAYFLKVEQVRQ  370 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999998654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.20  E-value=3.1e-11  Score=122.45  Aligned_cols=237  Identities=13%  Similarity=0.084  Sum_probs=148.2

Q ss_pred             hhHHHHHHHHHHcCChhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHh------CC-
Q 036290          515 ASWGAMMSALVHQGHNHEAVTIFHSLVEA-------GEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKL------GF-  580 (796)
Q Consensus       515 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-  580 (796)
                      .++..+...+...|++++|...++++.+.       ........+..+...+...|+++.|...++...+.      +- 
T Consensus        28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  107 (311)
T 3nf1_A           28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH  107 (311)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence            34555666666666666666666666442       11223345556666666777777777777666553      11 


Q ss_pred             CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---------C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC-----
Q 036290          581 NTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS---------N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLA-----  645 (796)
Q Consensus       581 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----  645 (796)
                      ......+..+...|...|++++|.+.+++.+..         + ....+..+...+...|++++|.++++++.+.     
T Consensus       108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~  187 (311)
T 3nf1_A          108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL  187 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence            223456667777777788888877777554432         1 3456777888888999999999999888763     


Q ss_pred             -CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhc------CCCCC-chHH------HHHHHHHHhcCChHHHHHHH
Q 036290          646 -NLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQY------GMQPS-PDCY------GCLVDMLSRNGYLEDAKHVI  710 (796)
Q Consensus       646 -g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~------~~~p~-~~~~------~~l~~~~~~~g~~~~A~~~~  710 (796)
                       +..| ...++..+...+...|++++|...++++....      ...+. ...+      ..+...+...+.+.+|...+
T Consensus       188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  267 (311)
T 3nf1_A          188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY  267 (311)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence             2244 34567788889999999999999999887421      12222 2222      22223334455566666666


Q ss_pred             HhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 036290          711 EIMP-FQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPK  751 (796)
Q Consensus       711 ~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  751 (796)
                      ++.. ..| +..+|..+..+|...|++++|...+++++++.|+
T Consensus       268 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          268 KACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             hhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence            6663 333 3467889999999999999999999999998875

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.20  E-value=1.7e-10  Score=121.99  Aligned_cols=263  Identities=13%  Similarity=0.061  Sum_probs=186.6

Q ss_pred             HHHHHHhcCCcchHHHHHhcCCC--C-C----HhhHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHH
Q 036290          489 LIKSYVNFGQLDNSFEFSNGAER--L-D----MASWGAMMSALVHQGHNHEAVTIFHSLVEA----GEKPD-EYILGTIL  556 (796)
Q Consensus       489 l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll  556 (796)
                      ....+...|++++|...|+...+  | +    ...|..+...+...|++++|...+++....    +-.|. ..++..+.
T Consensus        15 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la   94 (406)
T 3sf4_A           15 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG   94 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            33444444444444444443322  1 1    234566667777788888888887775332    21222 34667777


Q ss_pred             HHHhccCchHHHHHHHHHHHHhCCC-----CchhHHHHHHHHHHhcCC--------------------HHHHHHHHhccC
Q 036290          557 NSCAAIGAYQRTKSIHPFVIKLGFN-----TEVYVASAVIDAYAKCGD--------------------IKGARMAFDQSF  611 (796)
Q Consensus       557 ~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~~~  611 (796)
                      ..+...|+++.|...++...+....     .....+..+...|...|+                    +++|.+.+.+.+
T Consensus        95 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al  174 (406)
T 3sf4_A           95 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENL  174 (406)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence            8889999999999999887763211     124477888899999999                    999988886544


Q ss_pred             CC----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 036290          612 NS----N----DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANL-QPS----QATFVSVMSACSHKGLVDKGCLLFKSMD  678 (796)
Q Consensus       612 ~~----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~  678 (796)
                      ..    +    ....+..+...|...|++++|...+++..+... .++    ..++..+...+...|++++|...+++..
T Consensus       175 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  254 (406)
T 3sf4_A          175 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL  254 (406)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            32    1    335688888999999999999999999876211 112    2367888889999999999999999887


Q ss_pred             hhcCCCCC----chHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 036290          679 SQYGMQPS----PDCYGCLVDMLSRNGYLEDAKHVIEIM----PFQPS----PTVYRSLLSGCRIHGNKELGEWASEKLL  746 (796)
Q Consensus       679 ~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~  746 (796)
                      ....-.++    ..++..+...|...|++++|.+.+++.    +..++    ..++..+...+...|++++|...+++++
T Consensus       255 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  334 (406)
T 3sf4_A          255 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  334 (406)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            43211122    567888999999999999999999887    11222    4578888999999999999999999999


Q ss_pred             ccCCC
Q 036290          747 LLLPK  751 (796)
Q Consensus       747 ~~~p~  751 (796)
                      ++.+.
T Consensus       335 ~~~~~  339 (406)
T 3sf4_A          335 EISRE  339 (406)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.18  E-value=2e-07  Score=102.98  Aligned_cols=230  Identities=10%  Similarity=-0.021  Sum_probs=143.0

Q ss_pred             HHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHH-HHHhcCCC--C-CHhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 036290          466 MVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSF-EFSNGAER--L-DMASWGAMMSALVHQGHNHEAVTIFHSLV  541 (796)
Q Consensus       466 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~  541 (796)
                      .+..+|+..+..- +....++-..+..+...|+.++|. +++++...  | +...|-..+...-+.|++++|.++|+++.
T Consensus       327 Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l  405 (679)
T 4e6h_A          327 RMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI  405 (679)
T ss_dssp             HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3445555555542 445666666666666677777775 66665543  2 34445556666666777777777777765


Q ss_pred             HcC---------CCCC------------HHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-CC
Q 036290          542 EAG---------EKPD------------EYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKC-GD  599 (796)
Q Consensus       542 ~~g---------~~p~------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~  599 (796)
                      ...         -.|+            ...|...+....+.|+.+.|..+|....+.-.......|...+..-.+. ++
T Consensus       406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d  485 (679)
T 4e6h_A          406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD  485 (679)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence            431         0132            2356667777777788888888888877651111233343333333333 44


Q ss_pred             HHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHH
Q 036290          600 IKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP--SQATFVSVMSACSHKGLVDKGCLLFK  675 (796)
Q Consensus       600 ~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~A~~~~~  675 (796)
                      .+.|.++|+..++.  .+...|...+......|+.+.|..+|++.......+  ....|...+.--.+.|+.+.+..+.+
T Consensus       486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~  565 (679)
T 4e6h_A          486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK  565 (679)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            78888888666654  355666777777777888888888888887743222  23456666666677788888888888


Q ss_pred             HhHhhcCCCCCchHHHHHHHHHHh
Q 036290          676 SMDSQYGMQPSPDCYGCLVDMLSR  699 (796)
Q Consensus       676 ~~~~~~~~~p~~~~~~~l~~~~~~  699 (796)
                      ++...   .|+......+++-|.-
T Consensus       566 R~~~~---~P~~~~~~~f~~ry~~  586 (679)
T 4e6h_A          566 RFFEK---FPEVNKLEEFTNKYKV  586 (679)
T ss_dssp             HHHHH---STTCCHHHHHHHHTCB
T ss_pred             HHHHh---CCCCcHHHHHHHHhcC
Confidence            88744   5665555556665543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.17  E-value=8.5e-11  Score=126.50  Aligned_cols=211  Identities=10%  Similarity=0.057  Sum_probs=150.9

Q ss_pred             CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCch-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 036290          528 GHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAY-QRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMA  606 (796)
Q Consensus       528 ~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  606 (796)
                      +..++++..+++.... .+.+...+..+-..+...|++ ++|.+.++...+.... +...+..+..+|...|++++|.+.
T Consensus        82 ~~~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~  159 (474)
T 4abn_A           82 EEMEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTC  159 (474)
T ss_dssp             HHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3456666666665443 234666777777778888888 8888888888776544 566777788888888888888888


Q ss_pred             HhccCCC-CChhHHHHHHHHHHhc---------CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc--------CCH
Q 036290          607 FDQSFNS-NDVIVYNTLIMAYAHH---------GLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHK--------GLV  667 (796)
Q Consensus       607 ~~~~~~~-~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~--------g~~  667 (796)
                      |++.+.. |+...+..+...+...         |++++|++.+++..+  +.| +...|..+..+|...        |++
T Consensus       160 ~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~  237 (474)
T 4abn_A          160 FSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ--MDVLDGRSWYILGNAYLSLYFNTGQNPKIS  237 (474)
T ss_dssp             HHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence            8666554 5667777777777777         888888888888877  455 566677777777777        778


Q ss_pred             HHHHHHHHHhHhhcCCCC----CchHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHH
Q 036290          668 DKGCLLFKSMDSQYGMQP----SPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWA  741 (796)
Q Consensus       668 ~~A~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~  741 (796)
                      ++|+..|+++.+   +.|    +...|..+..+|...|++++|.+.+++. ...| +...+..+...+...|+.++|...
T Consensus       238 ~~A~~~~~~al~---~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~  314 (474)
T 4abn_A          238 QQALSAYAQAEK---VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLES  314 (474)
T ss_dssp             HHHHHHHHHHHH---HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888887773   345    4677777888888888888888888776 3444 345677777777777777777765


Q ss_pred             HHHH
Q 036290          742 SEKL  745 (796)
Q Consensus       742 ~~~~  745 (796)
                      ++++
T Consensus       315 ~~~~  318 (474)
T 4abn_A          315 KGKT  318 (474)
T ss_dssp             TTTC
T ss_pred             hccc
Confidence            5443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.15  E-value=5.5e-10  Score=120.11  Aligned_cols=207  Identities=8%  Similarity=-0.012  Sum_probs=171.7

Q ss_pred             cchHHHHHhcCCC---CCHhhHHHHHHHHHHcCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHH
Q 036290          499 LDNSFEFSNGAER---LDMASWGAMMSALVHQGHN-HEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPF  574 (796)
Q Consensus       499 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~  574 (796)
                      ++++...++....   .+...|..+...+...|++ ++|.+.|++..+.. +-+...+..+...+...|++++|.+.++.
T Consensus        84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  162 (474)
T 4abn_A           84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG  162 (474)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            5566666655433   4677888888899999999 99999999987763 34577888899999999999999999999


Q ss_pred             HHHhCCCCchhHHHHHHHHHHhc---------CCHHHHHHHHhccCCC--CChhHHHHHHHHHHhc--------CChHHH
Q 036290          575 VIKLGFNTEVYVASAVIDAYAKC---------GDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHH--------GLVSEA  635 (796)
Q Consensus       575 ~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~--------g~~~~A  635 (796)
                      ..+..  |+...+..+..+|...         |++++|.+.+++.+..  .+...|..+..+|...        |++++|
T Consensus       163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A  240 (474)
T 4abn_A          163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA  240 (474)
T ss_dssp             HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence            88865  4568888899999999         9999999999776653  4778899999999888        899999


Q ss_pred             HHHHHHHHHCCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHH
Q 036290          636 MEIFDKMKLANLQP----SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVI  710 (796)
Q Consensus       636 ~~~~~~m~~~g~~p----~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~  710 (796)
                      ++.|++..+  +.|    +...|..+..+|...|++++|.+.|+++.+   +.|+ ...+..+..++...|++++|++.+
T Consensus       241 ~~~~~~al~--~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~a~~~l~~~~~~lg~~~eAi~~~  315 (474)
T 4abn_A          241 LSAYAQAEK--VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA---LDPAWPEPQQREQQLLEFLSRLTSLLESK  315 (474)
T ss_dssp             HHHHHHHHH--HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHH--hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999998  456    667788888999999999999999999883   4566 677888999999999999998877


Q ss_pred             HhC
Q 036290          711 EIM  713 (796)
Q Consensus       711 ~~~  713 (796)
                      .++
T Consensus       316 ~~~  318 (474)
T 4abn_A          316 GKT  318 (474)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            665

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.13  E-value=1.1e-09  Score=101.31  Aligned_cols=160  Identities=13%  Similarity=0.126  Sum_probs=92.9

Q ss_pred             CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 036290          513 DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVID  592 (796)
Q Consensus       513 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  592 (796)
                      ++..|..+...|.+.|++++|++.|++..+.  .|+                                  +...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~----------------------------------~~~~~~~la~   47 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPN----------------------------------NVETLLKLGK   47 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT----------------------------------CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC----------------------------------CHHHHHHHHH
Confidence            3455666666666666666666666666554  222                                  3334444444


Q ss_pred             HHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHH
Q 036290          593 AYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDK  669 (796)
Q Consensus       593 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~  669 (796)
                      +|.+.|++++|...+......  .+...+..+...+...++++.|...+++..+  ..| +...+..+...+...|++++
T Consensus        48 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~  125 (184)
T 3vtx_A           48 TYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDK  125 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchh
Confidence            555555555555555333221  2444555555566666666666666666665  344 44556666666666777777


Q ss_pred             HHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          670 GCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       670 A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      |++.|++..+   +.|+ ..++..++.+|.+.|++++|++.+++.
T Consensus       126 A~~~~~~~l~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  167 (184)
T 3vtx_A          126 AIEAYEKTIS---IKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKA  167 (184)
T ss_dssp             HHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHH---hcchhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            7777766662   3444 556666667777777777777766665

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.12  E-value=5e-10  Score=107.72  Aligned_cols=202  Identities=15%  Similarity=0.071  Sum_probs=147.7

Q ss_pred             CCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHH
Q 036290          547 PDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIM  624 (796)
Q Consensus       547 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~  624 (796)
                      .|+..+...-..+...|+++.|...++...+....++...+..+..++...|++++|.+.+++.+..  .+...|..+..
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   84 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA   84 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence            4567777777888888999999999998888776556677777888888889999998888766654  35667888888


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC---chHHHHH
Q 036290          625 AYAHHGLVSEAMEIFDKMKLANLQPS-Q-------ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS---PDCYGCL  693 (796)
Q Consensus       625 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l  693 (796)
                      .|...|++++|+..+++..+  ..|+ .       ..|..+...+...|++++|+..|+++.   ...|+   ...+..+
T Consensus        85 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l  159 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSL  159 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHH
Confidence            88888888899888888887  4563 3       346666677788888888888888887   45665   4667777


Q ss_pred             HHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEec
Q 036290          694 VDMLSRNGYLEDAKHVIEIM-PF-QPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLS  760 (796)
Q Consensus       694 ~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~  760 (796)
                      ..+|...|+.     .++++ .. ..+...|....  ....+++++|...++++++++|+++.+...|+
T Consensus       160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~  221 (228)
T 4i17_A          160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQD  221 (228)
T ss_dssp             HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence            7777665543     23333 11 22333343332  33456689999999999999999988766553

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.11  E-value=1.1e-09  Score=110.83  Aligned_cols=179  Identities=16%  Similarity=0.114  Sum_probs=118.3

Q ss_pred             hHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchh-HHHHHHHHHHhcCCHHHHHHHHh
Q 036290          531 HEAVTIFHSLVEAGEKP-DEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVY-VASAVIDAYAKCGDIKGARMAFD  608 (796)
Q Consensus       531 ~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~  608 (796)
                      ++|..+|++.... +.| +...|..+...+...|+++.|.++|+...+.... +.. .|..++..+.+.|++++|..+|+
T Consensus        81 ~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~  158 (308)
T 2ond_A           81 DEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            5666666666542 133 3345566666666666666666666666653222 222 66677777777777777777776


Q ss_pred             ccCCC--CChhHHHHHHHHHH-hcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCC
Q 036290          609 QSFNS--NDVIVYNTLIMAYA-HHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQ  684 (796)
Q Consensus       609 ~~~~~--~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~  684 (796)
                      +.+..  ++...|........ ..|++++|.++|++..+  ..| +...|..++..+.+.|++++|..+|+++.....+.
T Consensus       159 ~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~  236 (308)
T 2ond_A          159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK--KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  236 (308)
T ss_dssp             HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence            66553  23334433333322 26888888888888877  445 56677778888888888888888888888542245


Q ss_pred             CC--chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          685 PS--PDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       685 p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      |+  ...|..++..+.+.|+.++|..+++++
T Consensus       237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a  267 (308)
T 2ond_A          237 PEKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            53  567778888888888888888888877

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.09  E-value=8.3e-10  Score=113.16  Aligned_cols=129  Identities=16%  Similarity=0.058  Sum_probs=87.8

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhccCCC----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCC-CH
Q 036290          585 YVASAVIDAYAKCGDIKGARMAFDQSFNS----N----DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLAN----LQP-SQ  651 (796)
Q Consensus       585 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p-~~  651 (796)
                      ..+..+...|...|++++|.+.+++.+..    +    ....+..+...+...|++++|...+++..+..    ..+ ..
T Consensus       184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  263 (338)
T 3ro2_A          184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA  263 (338)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence            34555666667777777777766544432    1    12366777788888888888888888776521    111 14


Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          652 ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS----PDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       652 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      .++..+...+...|++++|...++++.....-..+    ..++..+..+|.+.|++++|.+.+++.
T Consensus       264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  329 (338)
T 3ro2_A          264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  329 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            45677778888899999999988887643111111    456778888899999999999988875

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.07  E-value=4.7e-10  Score=125.47  Aligned_cols=164  Identities=13%  Similarity=0.171  Sum_probs=141.7

Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 036290          583 EVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMS  659 (796)
Q Consensus       583 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~  659 (796)
                      +...++.+...|.+.|++++|++.|++.+..  .+...|..+..+|.+.|++++|++.|++..+  +.| +...|..+..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~   85 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence            3567788888888899999999888776653  4778899999999999999999999999998  677 5678899999


Q ss_pred             HHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChH
Q 036290          660 ACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS-PTVYRSLLSGCRIHGNKE  736 (796)
Q Consensus       660 ~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~  736 (796)
                      ++...|++++|++.|++..   .+.|+ ...|..+..+|.+.|++++|++.+++. ...|+ ...|..+..++...|+++
T Consensus        86 ~l~~~g~~~~A~~~~~kAl---~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAI---QINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence            9999999999999999998   45777 788999999999999999999999987 55664 578899999999999999


Q ss_pred             HHHHHHHHHHccCCC
Q 036290          737 LGEWASEKLLLLLPK  751 (796)
Q Consensus       737 ~A~~~~~~~~~~~p~  751 (796)
                      +|.+.+++++++.|+
T Consensus       163 ~A~~~~~kal~l~~~  177 (723)
T 4gyw_A          163 DYDERMKKLVSIVAD  177 (723)
T ss_dssp             THHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhChh
Confidence            999999999987664

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.07  E-value=2.6e-08  Score=103.99  Aligned_cols=230  Identities=10%  Similarity=-0.006  Sum_probs=169.8

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCchHHHHHHHHHHHHhC--C---C-CchhHHH
Q 036290          520 MMSALVHQGHNHEAVTIFHSLVEAGE-KPD----EYILGTILNSCAAIGAYQRTKSIHPFVIKLG--F---N-TEVYVAS  588 (796)
Q Consensus       520 li~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~---~-~~~~~~~  588 (796)
                      ....+...|++++|...|++..+... .++    ..++..+...+...|+++.|...+....+..  .   . ....+++
T Consensus       107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  186 (378)
T 3q15_A          107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF  186 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence            34455678888888888888764311 122    3456667777888888888888888776531  1   1 1245677


Q ss_pred             HHHHHHHhcCCHHHHHHHHhccCCC----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHHHHHH
Q 036290          589 AVIDAYAKCGDIKGARMAFDQSFNS----N----DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLA----NLQPSQATFVS  656 (796)
Q Consensus       589 ~li~~~~~~g~~~~A~~~~~~~~~~----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~  656 (796)
                      .+...|...|++++|.+.+++.+..    +    ...++..+...|...|++++|.+.+++..+.    +.+....++..
T Consensus       187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  266 (378)
T 3q15_A          187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG  266 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence            7888899999999999888665542    2    2346778888999999999999999998761    11223566888


Q ss_pred             HHHHHhccCCHHHHHHHHHHhHhhcCCCCC---chHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCCH-HHHHHHHHHH
Q 036290          657 VMSACSHKGLVDKGCLLFKSMDSQYGMQPS---PDCYGCLVDMLSRNGY---LEDAKHVIEIMPFQPSP-TVYRSLLSGC  729 (796)
Q Consensus       657 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~l~~~~  729 (796)
                      +...+.+.|++++|..++++......-.++   ...+..+...+...|+   +.+|+..+++.+..|+. ..+..+...|
T Consensus       267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y  346 (378)
T 3q15_A          267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF  346 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence            889999999999999999998855332222   3456667777778888   99999999997655543 4667888889


Q ss_pred             HhcCChHHHHHHHHHHHccC
Q 036290          730 RIHGNKELGEWASEKLLLLL  749 (796)
Q Consensus       730 ~~~g~~~~A~~~~~~~~~~~  749 (796)
                      ...|++++|...++++++..
T Consensus       347 ~~~g~~~~A~~~~~~al~~~  366 (378)
T 3q15_A          347 ESSCHFEQAAAFYRKVLKAQ  366 (378)
T ss_dssp             HHTTCHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHH
Confidence            99999999999999998753

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.06  E-value=5.2e-09  Score=109.63  Aligned_cols=221  Identities=9%  Similarity=-0.074  Sum_probs=153.2

Q ss_pred             HHHHHHhcCCcchHHHHHhcCCC-----C----CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCC-----HHHHH
Q 036290          489 LIKSYVNFGQLDNSFEFSNGAER-----L----DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGE-KPD-----EYILG  553 (796)
Q Consensus       489 l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~-----~~t~~  553 (796)
                      ....+...|++++|...++...+     +    ...+|..+...|...|++++|...+++..+.-. .++     ..++.
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            44455666777777766665433     1    234566777777778888888887777643210 111     24566


Q ss_pred             HHHHHHhccCchHHHHHHHHHHHHhCCC-----CchhHHHHHHHHHHhcCCHHHHHHHHhccCC-----C--C-ChhHHH
Q 036290          554 TILNSCAAIGAYQRTKSIHPFVIKLGFN-----TEVYVASAVIDAYAKCGDIKGARMAFDQSFN-----S--N-DVIVYN  620 (796)
Q Consensus       554 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~--~-~~~~~~  620 (796)
                      .+-..+...|+++.|.+.++...+....     ....++..+..+|...|++++|.+.+++.+.     .  | ...++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            6667778888888888888776653111     1124677788888899999999888866655     1  2 345678


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCC---CC-CHHHHHHHHHHHhccCC---HHHHHHHHHHhHhhcCCCCC-chHHHH
Q 036290          621 TLIMAYAHHGLVSEAMEIFDKMKLANL---QP-SQATFVSVMSACSHKGL---VDKGCLLFKSMDSQYGMQPS-PDCYGC  692 (796)
Q Consensus       621 ~li~~~~~~g~~~~A~~~~~~m~~~g~---~p-~~~t~~~ll~~~~~~g~---~~~A~~~~~~~~~~~~~~p~-~~~~~~  692 (796)
                      .+...|...|++++|...+++..+...   .| ....+..+...+...|+   +++|+.++++..    ..|+ ...+..
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~----~~~~~~~~~~~  344 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM----LYADLEDFAID  344 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT----CHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc----CHHHHHHHHHH
Confidence            888899999999999999998876211   12 22335667778888898   778888877663    3344 667888


Q ss_pred             HHHHHHhcCChHHHHHHHHhC
Q 036290          693 LVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       693 l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      +...|...|++++|.+.+++.
T Consensus       345 la~~y~~~g~~~~A~~~~~~a  365 (383)
T 3ulq_A          345 VAKYYHERKNFQKASAYFLKV  365 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHH
Confidence            999999999999999999876

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.01  E-value=1.7e-08  Score=98.47  Aligned_cols=242  Identities=11%  Similarity=0.060  Sum_probs=160.4

Q ss_pred             HHhcCCcchHHHHHhcCCCCC-HhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHH
Q 036290          493 YVNFGQLDNSFEFSNGAERLD-MASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSI  571 (796)
Q Consensus       493 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~  571 (796)
                      ..-.|.+..++.-...+...+ ...-.-+.++|...|++...         ..-.|....+..+...+ ..+    +...
T Consensus        23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~   88 (310)
T 3mv2_B           23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEE   88 (310)
T ss_dssp             HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHH
T ss_pred             HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHH
Confidence            334566665555444443211 12222234566666665531         11233333333333333 222    5566


Q ss_pred             HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 036290          572 HPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS----NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANL  647 (796)
Q Consensus       572 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  647 (796)
                      ++.+...+ .++......+..++...|++++|++++.+.+..    .+...+..++..+.+.|+.+.|.+.+++|.+  .
T Consensus        89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~  165 (310)
T 3mv2_B           89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--A  165 (310)
T ss_dssp             HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred             HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence            66665554 344555567888899999999999999666554    3667788889999999999999999999988  6


Q ss_pred             CC-----CHHHHHHHHHH--HhccC--CHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CC--
Q 036290          648 QP-----SQATFVSVMSA--CSHKG--LVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PF--  715 (796)
Q Consensus       648 ~p-----~~~t~~~ll~~--~~~~g--~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--  715 (796)
                      .|     +..+...|..+  ....|  ++++|..+|+++..   -.|+..+...+..++.+.|++++|.+.++.+ ..  
T Consensus       166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~---~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p  242 (310)
T 3mv2_B          166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ---TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY  242 (310)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT---TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred             CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            77     36666667666  33344  89999999999873   3565333344555899999999999999865 21  


Q ss_pred             --------CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcce
Q 036290          716 --------QP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAH  756 (796)
Q Consensus       716 --------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  756 (796)
                              .| |+.+...+|......|+  +|.++++++.+.+|+++...
T Consensus       243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~  290 (310)
T 3mv2_B          243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK  290 (310)
T ss_dssp             HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred             cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence                    24 45666677777667787  88999999999999988654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.99  E-value=1.7e-09  Score=109.53  Aligned_cols=160  Identities=11%  Similarity=0.114  Sum_probs=80.1

Q ss_pred             HHHHHHHHHhccCchHHHHHHHHHHHHh------CCC-CchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---------C
Q 036290          551 ILGTILNSCAAIGAYQRTKSIHPFVIKL------GFN-TEVYVASAVIDAYAKCGDIKGARMAFDQSFNS---------N  614 (796)
Q Consensus       551 t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~  614 (796)
                      ++..+...+...|+++.|.+.++...+.      +-. .....+..+...|...|++++|.+.+++.+..         +
T Consensus       113 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  192 (311)
T 3nf1_A          113 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDP  192 (311)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCH
Confidence            3444444444555555555555444432      111 12334455555666666666666655443321         1


Q ss_pred             -ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC-------CCCCCHHH-------HHHHHHHHhccCCHHHHHHHHHHhHh
Q 036290          615 -DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLA-------NLQPSQAT-------FVSVMSACSHKGLVDKGCLLFKSMDS  679 (796)
Q Consensus       615 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t-------~~~ll~~~~~~g~~~~A~~~~~~~~~  679 (796)
                       ....+..+...|...|++++|.+.++++.+.       ...+....       +..+...+...+.+.++...++... 
T Consensus       193 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-  271 (311)
T 3nf1_A          193 NVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACK-  271 (311)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--------
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcC-
Confidence             3345667777777788888888777777652       12221111       1122223333444555555565554 


Q ss_pred             hcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          680 QYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       680 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                        ...|+ ..++..++.+|.+.|++++|.+.+++.
T Consensus       272 --~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  304 (311)
T 3nf1_A          272 --VDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA  304 (311)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             --CCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence              23344 677888888899999999998888764

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.92  E-value=1.4e-07  Score=98.21  Aligned_cols=91  Identities=14%  Similarity=0.089  Sum_probs=44.3

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHc----CCC--CC-HHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCC----chhH
Q 036290          518 GAMMSALVHQGHNHEAVTIFHSLVEA----GEK--PD-EYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNT----EVYV  586 (796)
Q Consensus       518 ~~li~~~~~~~~~~~A~~~~~~m~~~----g~~--p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~  586 (796)
                      ..+...+...|++++|...+++....    +..  |. ...+..+...+...|+++.|...++.........    ....
T Consensus        97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  176 (373)
T 1hz4_A           97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  176 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence            34455556666666666666655331    111  21 2233344445556666666666666555432211    1223


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHh
Q 036290          587 ASAVIDAYAKCGDIKGARMAFD  608 (796)
Q Consensus       587 ~~~li~~~~~~g~~~~A~~~~~  608 (796)
                      +..+...+...|++++|...++
T Consensus       177 ~~~la~~~~~~g~~~~A~~~l~  198 (373)
T 1hz4_A          177 LAMLIQCSLARGDLDNARSQLN  198 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHH
Confidence            4444455555555555555553

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.92  E-value=1.9e-08  Score=86.95  Aligned_cols=130  Identities=19%  Similarity=0.222  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHH
Q 036290          618 VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP-SPDCYGCLVD  695 (796)
Q Consensus       618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~  695 (796)
                      .|..+...+...|++++|..+++++.+.  .| +...+..+...+...|++++|..+++++...   .| +...+..++.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~   77 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGN   77 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CCCchHHHHHHHH
Confidence            5677788888999999999999998874  34 6677888888899999999999999998844   34 3677888999


Q ss_pred             HHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 036290          696 MLSRNGYLEDAKHVIEIM-PF-QPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKN  752 (796)
Q Consensus       696 ~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  752 (796)
                      .+...|++++|.+.++++ .. +.+...+..++..+...|++++|...++++++.+|++
T Consensus        78 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           78 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            999999999999999887 33 3356788889999999999999999999999998863

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.91  E-value=9.2e-08  Score=95.54  Aligned_cols=213  Identities=8%  Similarity=0.001  Sum_probs=126.4

Q ss_pred             cchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCchHHHHHHHH
Q 036290          499 LDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEA----GEKPD-EYILGTILNSCAAIGAYQRTKSIHP  573 (796)
Q Consensus       499 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~  573 (796)
                      +++|...++..           ...|...|++++|...|.+..+.    |-.++ ..+|..+...+...|+++.|...++
T Consensus        33 ~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~  101 (292)
T 1qqe_A           33 FEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLE  101 (292)
T ss_dssp             HHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            56665555443           44566777777777777766432    21111 2345555555555666666655555


Q ss_pred             HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCC--
Q 036290          574 FVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHH-GLVSEAMEIFDKMKLANLQPS--  650 (796)
Q Consensus       574 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~--  650 (796)
                      ...+.               +...|+...+            ..+++.+...|... |++++|+..|++..+  +.|+  
T Consensus       102 ~Al~l---------------~~~~g~~~~~------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~--~~~~~~  152 (292)
T 1qqe_A          102 NAIQI---------------FTHRGQFRRG------------ANFKFELGEILENDLHDYAKAIDCYELAGE--WYAQDQ  152 (292)
T ss_dssp             HHHHH---------------HHHTTCHHHH------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HHHHTT
T ss_pred             HHHHH---------------HHHcCCHHHH------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHH--HHHhCC
Confidence            44331               1112222221            23456677777775 888888888777766  2221  


Q ss_pred             -----HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC---c-----hHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 036290          651 -----QATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS---P-----DCYGCLVDMLSRNGYLEDAKHVIEIM-PFQ  716 (796)
Q Consensus       651 -----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~  716 (796)
                           ..++..+...+...|++++|+..|+++...   .|+   .     ..|..++.++...|++++|...+++. .+.
T Consensus       153 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  229 (292)
T 1qqe_A          153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS---SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED  229 (292)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred             ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence                 245677777888888888888888887733   333   1     14566777788888888888888887 444


Q ss_pred             CCHH------HHHHHHHHHH--hcCChHHHHHHHHHHHccCCCCCc
Q 036290          717 PSPT------VYRSLLSGCR--IHGNKELGEWASEKLLLLLPKNDA  754 (796)
Q Consensus       717 p~~~------~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~  754 (796)
                      |+..      .+..++.++.  ..+++++|...++++.+++|....
T Consensus       230 p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~  275 (292)
T 1qqe_A          230 PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKIT  275 (292)
T ss_dssp             --------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHH
Confidence            5432      2344455553  345688888888888887775543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.90  E-value=1.5e-08  Score=100.81  Aligned_cols=200  Identities=13%  Similarity=0.056  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHhccCchHHHHHHHHHHHHh------CCC-CchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---------
Q 036290          550 YILGTILNSCAAIGAYQRTKSIHPFVIKL------GFN-TEVYVASAVIDAYAKCGDIKGARMAFDQSFNS---------  613 (796)
Q Consensus       550 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------  613 (796)
                      .++..+...+...|+++.|...++...+.      +-. .....+..+...|...|++++|.+.+.+.+..         
T Consensus        44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  123 (283)
T 3edt_B           44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH  123 (283)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence            34444444555555555555555544432      111 12345555666666666666666666544332         


Q ss_pred             C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhc----
Q 036290          614 N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLA------NLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQY----  681 (796)
Q Consensus       614 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~----  681 (796)
                      | ....+..+...|...|++++|...+++..+.      +-.| ...++..+...+...|++++|..+++++....    
T Consensus       124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~  203 (283)
T 3edt_B          124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE  203 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence            1 3456777788888888888888888888763      1134 34567888889999999999999999887431    


Q ss_pred             --CCCCC-chHHHHHHHHHHhcCC------hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 036290          682 --GMQPS-PDCYGCLVDMLSRNGY------LEDAKHVIEIMP-FQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLL  749 (796)
Q Consensus       682 --~~~p~-~~~~~~l~~~~~~~g~------~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  749 (796)
                        ...+. ...+..+...+...+.      +.++...++... ..| ...++..+...+...|++++|...++++++..
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  282 (283)
T 3edt_B          204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR  282 (283)
T ss_dssp             SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence              12333 3444444444444333      444444444443 223 23578889999999999999999999998753

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.90  E-value=1.5e-08  Score=113.44  Aligned_cols=157  Identities=13%  Similarity=0.158  Sum_probs=107.8

Q ss_pred             HHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHh
Q 036290          551 ILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAH  628 (796)
Q Consensus       551 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~  628 (796)
                      .++.+-..+.+.|++++|.+.+++..+.... +...+..+..+|.+.|++++|++.|++.+..  .+...|..+...|..
T Consensus        11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~   89 (723)
T 4gyw_A           11 SLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE   89 (723)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            3444444444444444444444444443322 4455666666777777777777777555442  356777888888888


Q ss_pred             cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHH
Q 036290          629 HGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDA  706 (796)
Q Consensus       629 ~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A  706 (796)
                      .|++++|++.|++..+  +.| +...|..+..++...|++++|++.|+++.   .+.|+ ...+..++.+|...|++++|
T Consensus        90 ~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al---~l~P~~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A           90 MQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTAL---KLKPDFPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred             cCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCChHHHhhhhhHHHhcccHHHH
Confidence            8888888888888887  566 55678888888888888888888888887   34676 67788888888888888888


Q ss_pred             HHHHHhC
Q 036290          707 KHVIEIM  713 (796)
Q Consensus       707 ~~~~~~~  713 (796)
                      .+.+++.
T Consensus       165 ~~~~~ka  171 (723)
T 4gyw_A          165 DERMKKL  171 (723)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8777665

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.89  E-value=4.1e-08  Score=94.18  Aligned_cols=197  Identities=11%  Similarity=0.102  Sum_probs=151.7

Q ss_pred             CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHH
Q 036290          512 LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVI  591 (796)
Q Consensus       512 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li  591 (796)
                      .|+..|......+...|++++|...|++..+....++...+..+..++...|+++.|.+.++...+.... +...+..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence            4667888888999999999999999999988764478888888888999999999999999999987655 677888999


Q ss_pred             HHHHhcCCHHHHHHHHhccCCC-C-Ch-------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 036290          592 DAYAKCGDIKGARMAFDQSFNS-N-DV-------IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPS---QATFVSVMS  659 (796)
Q Consensus       592 ~~~~~~g~~~~A~~~~~~~~~~-~-~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~  659 (796)
                      .+|...|++++|...+++.+.. | +.       ..|..+...+...|++++|++.|++..+  ..|+   ...+..+..
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~  161 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLGV  161 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHHH
Confidence            9999999999999999776653 3 44       4588888889999999999999999998  6776   345666666


Q ss_pred             HHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH
Q 036290          660 ACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPT  720 (796)
Q Consensus       660 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~  720 (796)
                      .+...|     ..+++++...  ...+...|....  ....|.+++|...+++. ...|+..
T Consensus       162 ~~~~~~-----~~~~~~a~~~--~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~  214 (228)
T 4i17_A          162 LFYNNG-----ADVLRKATPL--ASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRT  214 (228)
T ss_dssp             HHHHHH-----HHHHHHHGGG--TTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHH-----HHHHHHHHhc--ccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCH
Confidence            665444     4445555422  122234443332  34567789999999887 4566543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.87  E-value=1.1e-07  Score=99.15  Aligned_cols=219  Identities=11%  Similarity=0.060  Sum_probs=150.1

Q ss_pred             HHHHhcCCcchHHHHHhcCCC-----C----CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcC--C---CC-CHHHHHHH
Q 036290          491 KSYVNFGQLDNSFEFSNGAER-----L----DMASWGAMMSALVHQGHNHEAVTIFHSLVEAG--E---KP-DEYILGTI  555 (796)
Q Consensus       491 ~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g--~---~p-~~~t~~~l  555 (796)
                      ..+...|++++|...|+...+     +    ...++..+...|...|+++.|...+++..+..  .   .+ ...++..+
T Consensus       109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  188 (378)
T 3q15_A          109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI  188 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence            344556666666666554432     1    23356667777777788888877777764321  0   11 13456666


Q ss_pred             HHHHhccCchHHHHHHHHHHHHh----CCC-CchhHHHHHHHHHHhcCCHHHHHHHHhccCC-----C-C-ChhHHHHHH
Q 036290          556 LNSCAAIGAYQRTKSIHPFVIKL----GFN-TEVYVASAVIDAYAKCGDIKGARMAFDQSFN-----S-N-DVIVYNTLI  623 (796)
Q Consensus       556 l~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-~-~~~~~~~li  623 (796)
                      -..+...|+++.|.+.+....+.    +-. ....++..+..+|...|++++|.+.+++.+.     . | ...++..+.
T Consensus       189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la  268 (378)
T 3q15_A          189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS  268 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence            77778888888888887776652    111 1234667788888899999999988876665     2 2 356677888


Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCC---C-CHHHHHHHHHHHhccCC---HHHHHHHHHHhHhhcCCCCC-chHHHHHHH
Q 036290          624 MAYAHHGLVSEAMEIFDKMKLANLQ---P-SQATFVSVMSACSHKGL---VDKGCLLFKSMDSQYGMQPS-PDCYGCLVD  695 (796)
Q Consensus       624 ~~~~~~g~~~~A~~~~~~m~~~g~~---p-~~~t~~~ll~~~~~~g~---~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~  695 (796)
                      ..+.+.|++++|...+++..+....   | ....+..+...+...|+   +++|+.++++.    +..|+ ...+..+..
T Consensus       269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~----~~~~~~~~~~~~la~  344 (378)
T 3q15_A          269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK----NLHAYIEACARSAAA  344 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC----CChhHHHHHHHHHHH
Confidence            8999999999999999998874222   2 22345555566777888   88888888764    33344 566778999


Q ss_pred             HHHhcCChHHHHHHHHhC
Q 036290          696 MLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       696 ~~~~~g~~~~A~~~~~~~  713 (796)
                      .|...|++++|.+.+++.
T Consensus       345 ~y~~~g~~~~A~~~~~~a  362 (378)
T 3q15_A          345 VFESSCHFEQAAAFYRKV  362 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHH
Confidence            999999999999999875

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.87  E-value=1.5e-08  Score=95.39  Aligned_cols=127  Identities=9%  Similarity=0.079  Sum_probs=100.3

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHH
Q 036290          621 TLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLS  698 (796)
Q Consensus       621 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~  698 (796)
                      .+...|...|++++|...|++..+  +.| +...+..+...+...|++++|+..|+++.   .+.|+ ...+..+..+|.
T Consensus        59 ~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~  133 (208)
T 3urz_A           59 ELALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKIL---QLEADNLAANIFLGNYYY  133 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHH
Confidence            388889999999999999999998  567 66788889999999999999999999998   44676 788888888887


Q ss_pred             hcCC--hHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 036290          699 RNGY--LEDAKHVIEIMPFQPSP--TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKND  753 (796)
Q Consensus       699 ~~g~--~~~A~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  753 (796)
                      ..|+  .+.+...+++.. .|++  ..+..+..++...|++++|+..++++++++|+..
T Consensus       134 ~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~  191 (208)
T 3urz_A          134 LTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE  191 (208)
T ss_dssp             HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred             HHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence            6654  445556665552 3443  3455566677788999999999999999999743

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.84  E-value=1e-09  Score=97.13  Aligned_cols=129  Identities=9%  Similarity=-0.064  Sum_probs=81.1

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCCh
Q 036290          626 YAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYL  703 (796)
Q Consensus       626 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~  703 (796)
                      +...|++++|++.+++...  ..| +...+..+...|.+.|++++|++.|+++.   .+.|+ +..|..+..+|.+.|++
T Consensus         7 ~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al---~~~p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            7 RRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYI---NVQERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCch
Confidence            3445566666666666554  334 33345556666677777777777777766   33554 66666777777777777


Q ss_pred             HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHH-HHHHHHccCCCCCcceEEe
Q 036290          704 EDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEW-ASEKLLLLLPKNDAAHVLL  759 (796)
Q Consensus       704 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~p~~~~~~~~l  759 (796)
                      ++|...+++. ...| +..+|..+...+.+.|+.++|.. .++++++++|+++.+|.+.
T Consensus        82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~  140 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLK  140 (150)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            7777777666 4444 34566777777777777655443 4577777777777665443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.84  E-value=3.9e-08  Score=96.54  Aligned_cols=169  Identities=12%  Similarity=0.009  Sum_probs=121.8

Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C-C---hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHH
Q 036290          583 EVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N-D---VIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPS----QAT  653 (796)
Q Consensus       583 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t  653 (796)
                      +...+-.+...+.+.|++++|...|++.+.. | +   ...+..+..+|...|++++|...|++..+.  .|+    ...
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a   91 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQA   91 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHH
Confidence            3444555566677777777777777655553 3 3   456677777788888888888888888773  332    234


Q ss_pred             HHHHHHHHhc--------cCCHHHHHHHHHHhHhhcCCCCC-chHH-----------------HHHHHHHHhcCChHHHH
Q 036290          654 FVSVMSACSH--------KGLVDKGCLLFKSMDSQYGMQPS-PDCY-----------------GCLVDMLSRNGYLEDAK  707 (796)
Q Consensus       654 ~~~ll~~~~~--------~g~~~~A~~~~~~~~~~~~~~p~-~~~~-----------------~~l~~~~~~~g~~~~A~  707 (796)
                      +..+..++..        .|++++|+..|+++...   .|+ ....                 ..+..+|.+.|++++|+
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  168 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA  168 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence            5556666666        78888888888888744   344 2333                 56788999999999999


Q ss_pred             HHHHhC-CCCCC----HHHHHHHHHHHHhc----------CChHHHHHHHHHHHccCCCCCcce
Q 036290          708 HVIEIM-PFQPS----PTVYRSLLSGCRIH----------GNKELGEWASEKLLLLLPKNDAAH  756 (796)
Q Consensus       708 ~~~~~~-~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~  756 (796)
                      ..++++ ...|+    ...+..+..++...          |++++|...++++++..|+++.+.
T Consensus       169 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  232 (261)
T 3qky_A          169 VTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR  232 (261)
T ss_dssp             HHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred             HHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence            999987 33343    35677888888766          889999999999999999987543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.82  E-value=2.2e-07  Score=85.35  Aligned_cols=157  Identities=13%  Similarity=0.072  Sum_probs=96.2

Q ss_pred             hHhHHHHHHHhcCCcchHHHHHhcCCC---CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 036290          485 ICSSLIKSYVNFGQLDNSFEFSNGAER---LDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAA  561 (796)
Q Consensus       485 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~  561 (796)
                      .+..+...+...|++++|...++.+.+   .+...+..+...+...|++++|...+++..+.. +.+...          
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~----------   78 (186)
T 3as5_A           10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKV----------   78 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH----------
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHH----------
Confidence            344455566666666666666666554   244455556666666666666666666655442 223333          


Q ss_pred             cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHH
Q 036290          562 IGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIF  639 (796)
Q Consensus       562 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~  639 (796)
                                               +..+...+...|++++|.+.+++.+..  .+...+..+...+...|++++|.+.+
T Consensus        79 -------------------------~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~  133 (186)
T 3as5_A           79 -------------------------ATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSF  133 (186)
T ss_dssp             -------------------------HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             -------------------------HHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHH
Confidence                                     444444455555555555555333221  34556666777777777777787777


Q ss_pred             HHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHh
Q 036290          640 DKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDS  679 (796)
Q Consensus       640 ~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~  679 (796)
                      +++.+.  .| +...+..+...+...|++++|...++++.+
T Consensus       134 ~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  172 (186)
T 3as5_A          134 KIALGL--RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE  172 (186)
T ss_dssp             HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhc--CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            777763  34 556677777778888888888888887763

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.81  E-value=1.2e-06  Score=91.20  Aligned_cols=265  Identities=11%  Similarity=0.015  Sum_probs=190.2

Q ss_pred             HhHHHHHHHhcCCcchHHHHHhcCCC----CCHh----hHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCCH----HHH
Q 036290          486 CSSLIKSYVNFGQLDNSFEFSNGAER----LDMA----SWGAMMSALVHQGHNHEAVTIFHSLVEAGE-KPDE----YIL  552 (796)
Q Consensus       486 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~----~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~----~t~  552 (796)
                      .......+...|++++|...++....    .+..    .++.+...+...|++++|...+++.....- .++.    .++
T Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   96 (373)
T 1hz4_A           17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL   96 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            34455677789999999988776432    2222    456667788889999999999998754211 1222    234


Q ss_pred             HHHHHHHhccCchHHHHHHHHHHHHh----CCC--C-chhHHHHHHHHHHhcCCHHHHHHHHhccCCC----C---ChhH
Q 036290          553 GTILNSCAAIGAYQRTKSIHPFVIKL----GFN--T-EVYVASAVIDAYAKCGDIKGARMAFDQSFNS----N---DVIV  618 (796)
Q Consensus       553 ~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~---~~~~  618 (796)
                      ..+...+...|+++.|...++...+.    +..  | ....+..+...+...|++++|...+++.+..    .   ....
T Consensus        97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  176 (373)
T 1hz4_A           97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  176 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence            55667788999999999999987763    222  2 2345667888899999999999999765432    1   2346


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHH-----HHHHHhccCCHHHHHHHHHHhHhhcCCCCC-----c
Q 036290          619 YNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQ-ATFVS-----VMSACSHKGLVDKGCLLFKSMDSQYGMQPS-----P  687 (796)
Q Consensus       619 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~-----ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~  687 (796)
                      +..+...+...|++++|...+++.....-.++. ..+..     .+..+...|++++|...+++....   .|.     .
T Consensus       177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~  253 (373)
T 1hz4_A          177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP---EFANNHFLQ  253 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC---CCTTCGGGH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC---CCCcchhhH
Confidence            777888899999999999999998764222221 12222     224477899999999999988732   232     2


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC--CH-----HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 036290          688 DCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP--SP-----TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKND  753 (796)
Q Consensus       688 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  753 (796)
                      ..+..+..++...|++++|.+.+++. ...+  ..     ..+..+..++...|+.++|...++++++..+...
T Consensus       254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g  327 (373)
T 1hz4_A          254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG  327 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc
Confidence            24567889999999999999999987 2222  21     2556667778999999999999999999987543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.79  E-value=2.2e-08  Score=100.07  Aligned_cols=162  Identities=9%  Similarity=0.006  Sum_probs=116.2

Q ss_pred             HHHHhcCCHHHHHHHHhccCCC----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---C----HHHHHH
Q 036290          592 DAYAKCGDIKGARMAFDQSFNS----N----DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP---S----QATFVS  656 (796)
Q Consensus       592 ~~~~~~g~~~~A~~~~~~~~~~----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~----~~t~~~  656 (796)
                      ..|...|++++|...|.+.+..    .    ...+|+.+...|...|++++|+..+++..+  +.|   +    ..++..
T Consensus        45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~~~~g~~~~~a~~~~~  122 (292)
T 1qqe_A           45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ--IFTHRGQFRRGANFKFE  122 (292)
T ss_dssp             HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HHHHcCCHHHHHHHHHH
Confidence            3566677777777766544331    1    245677888888888999999888888776  222   1    346788


Q ss_pred             HHHHHhcc-CCHHHHHHHHHHhHhhcCCCCC----chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH--------HHH
Q 036290          657 VMSACSHK-GLVDKGCLLFKSMDSQYGMQPS----PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP--------TVY  722 (796)
Q Consensus       657 ll~~~~~~-g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~--------~~~  722 (796)
                      +...|... |++++|+..|++...-..-..+    ..++..++..+.+.|++++|++.+++. ...|+.        ..|
T Consensus       123 lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  202 (292)
T 1qqe_A          123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF  202 (292)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred             HHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            88899986 9999999999998843111111    356888999999999999999999987 233321        156


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHccCCCCCcc
Q 036290          723 RSLLSGCRIHGNKELGEWASEKLLLLLPKNDAA  755 (796)
Q Consensus       723 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  755 (796)
                      ..+..++...|++++|...++++++++|+....
T Consensus       203 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  235 (292)
T 1qqe_A          203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADS  235 (292)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence            778888999999999999999999999987654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.78  E-value=3.5e-08  Score=109.25  Aligned_cols=159  Identities=14%  Similarity=0.081  Sum_probs=113.4

Q ss_pred             cCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHH
Q 036290          597 CGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLL  673 (796)
Q Consensus       597 ~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~  673 (796)
                      .|++++|.+.+++.+..  .+...|..+...+...|++++|.+.+++..+  ..| +...+..+...+...|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            36677777777665554  3567788888888888888888888888887  556 566777788888888888888888


Q ss_pred             HHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChHHHHHHHHHHHc
Q 036290          674 FKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIH---GNKELGEWASEKLLL  747 (796)
Q Consensus       674 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~  747 (796)
                      +++..+.   .|+ ...+..+..+|.+.|++++|.+.+++. ...| +...+..+..++...   |+.++|.+.++++++
T Consensus        80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~  156 (568)
T 2vsy_A           80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA  156 (568)
T ss_dssp             HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence            8888743   455 677888888888888888888888887 3344 456778888888888   888889999998888


Q ss_pred             cCCCCCcceEEec
Q 036290          748 LLPKNDAAHVLLS  760 (796)
Q Consensus       748 ~~p~~~~~~~~l~  760 (796)
                      .+|++...+.+|+
T Consensus       157 ~~p~~~~~~~~l~  169 (568)
T 2vsy_A          157 QGVGAVEPFAFLS  169 (568)
T ss_dssp             HTCCCSCHHHHTT
T ss_pred             cCCcccChHHHhC
Confidence            8888877776666

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.74  E-value=1.4e-07  Score=90.13  Aligned_cols=89  Identities=9%  Similarity=-0.028  Sum_probs=67.6

Q ss_pred             cCCHHHHHHHHHHhHhhcCCCCC-chHH-----------------HHHHHHHHhcCChHHHHHHHHhC-CCCCCH----H
Q 036290          664 KGLVDKGCLLFKSMDSQYGMQPS-PDCY-----------------GCLVDMLSRNGYLEDAKHVIEIM-PFQPSP----T  720 (796)
Q Consensus       664 ~g~~~~A~~~~~~~~~~~~~~p~-~~~~-----------------~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~  720 (796)
                      .|++++|...|+++.   ...|+ ...+                 ..+...|.+.|++++|+..++++ ...|+.    .
T Consensus       109 ~~~~~~A~~~~~~~l---~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  185 (225)
T 2yhc_A          109 PQQARAAFSDFSKLV---RGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRD  185 (225)
T ss_dssp             CHHHHHHHHHHHHHH---TTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred             cHHHHHHHHHHHHHH---HHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHH
Confidence            566777777777766   33444 2222                 34677889999999999999988 334442    5


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcc
Q 036290          721 VYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAA  755 (796)
Q Consensus       721 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  755 (796)
                      .+..+..++.+.|+.++|++.++.+....|++..-
T Consensus       186 a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~  220 (225)
T 2yhc_A          186 ALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH  220 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence            68889999999999999999999999999987654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.72  E-value=2.1e-08  Score=88.65  Aligned_cols=139  Identities=14%  Similarity=0.069  Sum_probs=108.3

Q ss_pred             HHHHHhcCCHHHHHHHHhccCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCH
Q 036290          591 IDAYAKCGDIKGARMAFDQSFNSN--DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLV  667 (796)
Q Consensus       591 i~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~  667 (796)
                      ..++...|++++|+..++..++.+  +...+..+...|...|++++|++.|++..+  +.| +..+|..+...+...|++
T Consensus         4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCch
Confidence            345556778888888887777662  455667788899999999999999999998  667 677888899999999999


Q ss_pred             HHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHH-HHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 036290          668 DKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHV-IEIM-PFQP-SPTVYRSLLSGCRIHGN  734 (796)
Q Consensus       668 ~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~-~~~~-~~~p-~~~~~~~l~~~~~~~g~  734 (796)
                      ++|+..|+++.   .+.|+ +..+..+..+|.+.|++++|.+. +++. .+.| ++.+|......+...|+
T Consensus        82 ~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           82 DKAVECYRRSV---ELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            99999999998   45676 78888999999999998876655 5665 5566 45667666666666664

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.71  E-value=1.4e-07  Score=106.24  Aligned_cols=142  Identities=14%  Similarity=0.031  Sum_probs=70.0

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 036290          584 VYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSA  660 (796)
Q Consensus       584 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~  660 (796)
                      ...+..+..+|...|++++|.+.+++.+..  .+...|..+..++...|++++|.+.|++..+  +.| +...+..+..+
T Consensus       433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~  510 (681)
T 2pzi_A          433 VELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLD--TFPGELAPKLALAAT  510 (681)
T ss_dssp             SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHH
Confidence            334444445555555555555555443332  2444555555555555555555555555555  334 33444555555


Q ss_pred             HhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHh
Q 036290          661 CSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP-TVYRSLLSGCRI  731 (796)
Q Consensus       661 ~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~  731 (796)
                      +...|++++ ++.|+++.   .+.|+ ...|..+..++.+.|++++|.+.++++ ...|+. ..|..+..++..
T Consensus       511 ~~~~g~~~~-~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~  580 (681)
T 2pzi_A          511 AELAGNTDE-HKFYQTVW---STNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS  580 (681)
T ss_dssp             HHHHTCCCT-TCHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred             HHHcCChHH-HHHHHHHH---HhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence            555555555 55555554   22343 444555555555555555555555555 344432 344444444433

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.70  E-value=1.2e-06  Score=85.35  Aligned_cols=182  Identities=11%  Similarity=0.116  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 036290          533 AVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGF-NTEVYVASAVIDAYAKCGDIKGARMAFDQSF  611 (796)
Q Consensus       533 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~  611 (796)
                      |+..|++....+ .++..++..+..++...|+++.|.+++...+..+. .-+...+..++..+.+.|+.+.|.+.++++.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            566666665544 45555555666677777888888888777665554 2356677777888888888888888885443


Q ss_pred             CC-C-----ChhHHHHHHHH--HHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhc
Q 036290          612 NS-N-----DVIVYNTLIMA--YAHHG--LVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQY  681 (796)
Q Consensus       612 ~~-~-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~  681 (796)
                      .. |     +..+...++.+  ....|  ++.+|..+|+++.+  -.|+..+-..++.++.+.|++++|...++.+.+.+
T Consensus       164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~--~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~  241 (310)
T 3mv2_B          164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ--TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY  241 (310)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT--TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred             hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            33 3     24455555555  33334  89999999999876  44664444455558888999999999998776431


Q ss_pred             -C------CCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH
Q 036290          682 -G------MQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP  719 (796)
Q Consensus       682 -~------~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~  719 (796)
                       .      ..|+ +.++..+|.+....|+  +|.++++++ ...|+.
T Consensus       242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h  286 (310)
T 3mv2_B          242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH  286 (310)
T ss_dssp             HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence             0      0355 7777666666666777  788888888 456654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.68  E-value=1.2e-07  Score=86.43  Aligned_cols=156  Identities=9%  Similarity=-0.035  Sum_probs=115.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-Hhc
Q 036290          587 ASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSA-CSH  663 (796)
Q Consensus       587 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~  663 (796)
                      ...+...+...|++++|...+++.+..  .+...+..+...+...|++++|...+++..+  ..|+...+..+... +..
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~   86 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNSYKSLIAKLELHQ   86 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChHHHHHHHHHHHHh
Confidence            445566778889999999999766654  4777888888999999999999999988876  44543322222111 112


Q ss_pred             cCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCChHHH
Q 036290          664 KGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS---PTVYRSLLSGCRIHGNKELG  738 (796)
Q Consensus       664 ~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~A  738 (796)
                      .+....|...+++..   ...|+ +..+..+..++...|++++|.+.++++ ...|+   ...+..+...+...|+.++|
T Consensus        87 ~~~~~~a~~~~~~al---~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A  163 (176)
T 2r5s_A           87 QAAESPELKRLEQEL---AANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI  163 (176)
T ss_dssp             HHTSCHHHHHHHHHH---HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred             hcccchHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence            222334678888877   34666 788888999999999999999999887 55554   45788889999999999999


Q ss_pred             HHHHHHHHc
Q 036290          739 EWASEKLLL  747 (796)
Q Consensus       739 ~~~~~~~~~  747 (796)
                      ...+++++.
T Consensus       164 ~~~y~~al~  172 (176)
T 2r5s_A          164 ASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.67  E-value=3e-08  Score=84.52  Aligned_cols=110  Identities=13%  Similarity=0.025  Sum_probs=90.4

Q ss_pred             CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHH
Q 036290          647 LQPS-QATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVY  722 (796)
Q Consensus       647 ~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~  722 (796)
                      +.|+ ...+......+.+.|++++|++.|++..+   +.|+ ...|..+..+|.+.|++++|++.+++. ...| +...|
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~   84 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK---RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY   84 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence            5563 35577777888899999999999998883   4565 788888999999999999999999887 4444 56788


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEe
Q 036290          723 RSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLL  759 (796)
Q Consensus       723 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  759 (796)
                      ..+..++...|++++|++.++++++++|+++.++..|
T Consensus        85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l  121 (126)
T 4gco_A           85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV  121 (126)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence            9999999999999999999999999999998776544

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.67  E-value=8.8e-07  Score=87.73  Aligned_cols=167  Identities=13%  Similarity=0.152  Sum_probs=82.1

Q ss_pred             hHHHHHHHHHHcCChhHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHH
Q 036290          516 SWGAMMSALVHQGHNHEAVTIFHSLVEA------GE-KPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVAS  588 (796)
Q Consensus       516 ~~~~li~~~~~~~~~~~A~~~~~~m~~~------g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  588 (796)
                      ++..+...|...|++++|...+++....      .- +....++..+...+...|+++.|...++...+.          
T Consensus        87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------  156 (283)
T 3edt_B           87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI----------  156 (283)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------
Confidence            4555566666666666666666665432      11 112344555556666666666666666655442          


Q ss_pred             HHHHHHHhcCCHHHHHHHHhccCC--CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC-------CCCCCH-HHHHHH
Q 036290          589 AVIDAYAKCGDIKGARMAFDQSFN--SN-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLA-------NLQPSQ-ATFVSV  657 (796)
Q Consensus       589 ~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~-~t~~~l  657 (796)
                                        +.....  .+ ....+..+...|...|++++|...+++..+.       ...+.. ..+..+
T Consensus       157 ------------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  218 (283)
T 3edt_B          157 ------------------YATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHA  218 (283)
T ss_dssp             ------------------HHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHH
T ss_pred             ------------------HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence                              000000  00 2234455555566666666666666655542       122322 223322


Q ss_pred             HHHHhccC------CHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          658 MSACSHKG------LVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       658 l~~~~~~g------~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      .......+      .+..+...++...   ...|+ ..++..+..+|.+.|++++|.+++++.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  278 (283)
T 3edt_B          219 EEREESKDKRRDSAPYGEYGSWYKACK---VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA  278 (283)
T ss_dssp             HHHHHTTCCCCC------------CCC---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhcCCchhHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            22222222      2333333333222   12233 566778888888889999888888764

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.64  E-value=7e-07  Score=100.47  Aligned_cols=182  Identities=9%  Similarity=-0.016  Sum_probs=141.2

Q ss_pred             HHcCChhHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 036290          525 VHQGHNHEAVTIFHSLV--------EAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAK  596 (796)
Q Consensus       525 ~~~~~~~~A~~~~~~m~--------~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  596 (796)
                      ...|++++|++.+++..        +. .+.+...+..+..++...|+++.|.+.++...+.... +...+..+..+|..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence            56788888888888876        32 1334456777777888888899998888888876554 66788888888999


Q ss_pred             cCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHH
Q 036290          597 CGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLL  673 (796)
Q Consensus       597 ~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~  673 (796)
                      .|++++|.+.|++.+..  .+...|..+..++...|++++ ++.|++..+  ..| +...|..+..++...|++++|++.
T Consensus       480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999776653  377788889999999999999 999999988  566 567788888899999999999999


Q ss_pred             HHHhHhhcCCCCC-chHHHHHHHHHHhcCC--------hHHHHHHHHhCC
Q 036290          674 FKSMDSQYGMQPS-PDCYGCLVDMLSRNGY--------LEDAKHVIEIMP  714 (796)
Q Consensus       674 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~  714 (796)
                      |+++.   .+.|+ ...+..+..++...|+        +++|.+.++.+.
T Consensus       557 ~~~al---~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~  603 (681)
T 2pzi_A          557 LDEVP---PTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP  603 (681)
T ss_dssp             HHTSC---TTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred             HHhhc---ccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence            99887   66787 6777778888766444        667777777763

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.62  E-value=2.9e-07  Score=86.53  Aligned_cols=186  Identities=15%  Similarity=0.073  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 036290          517 WGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAK  596 (796)
Q Consensus       517 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  596 (796)
                      +-.....+...|++++|...|++..+.  .|+........ ....  .               ..........+..+|.+
T Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~-~~~~--~---------------~~~~~~~~~~lg~~~~~   66 (208)
T 3urz_A            7 MLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT-NVDK--N---------------SEISSKLATELALAYKK   66 (208)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH-HSCT--T---------------SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh-hhcc--h---------------hhhhHHHHHHHHHHHHH
Confidence            334455677888999999998888765  44432211110 0000  0               00112233457888899


Q ss_pred             cCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCC--HHHHH
Q 036290          597 CGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGL--VDKGC  671 (796)
Q Consensus       597 ~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~--~~~A~  671 (796)
                      .|++++|...|++.+..  .+...|..+...+...|++++|...|++..+  +.| +..++..+...+...|.  .+.+.
T Consensus        67 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~  144 (208)
T 3urz_A           67 NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLE  144 (208)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence            99999999999776653  4788899999999999999999999999998  667 56678777777765553  44555


Q ss_pred             HHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 036290          672 LLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVYRSLLS  727 (796)
Q Consensus       672 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~  727 (796)
                      ..++...   ...|....+..+..++...|++++|+..|++. ...|+......+..
T Consensus       145 ~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~  198 (208)
T 3urz_A          145 TDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK  198 (208)
T ss_dssp             HHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred             HHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            5555543   22333334455677778889999999999987 77888766555544

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.62  E-value=1.5e-06  Score=81.90  Aligned_cols=173  Identities=12%  Similarity=-0.067  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 036290          568 TKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHG----LVSEAMEIFDKMK  643 (796)
Q Consensus       568 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~  643 (796)
                      |.+.|+...+.|   ++..+..+...|...+++++|.+.|++.....+...+..|...|.. +    ++++|.++|++..
T Consensus         5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~   80 (212)
T 3rjv_A            5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV   80 (212)
T ss_dssp             TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence            344444444443   5566667777777778888888888777666777777777777777 5    7888888888887


Q ss_pred             HCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHhhcCCCCC---chHHHHHHHHHHh----cCChHHHHHHHHh
Q 036290          644 LANLQPSQATFVSVMSACSH----KGLVDKGCLLFKSMDSQYGMQPS---PDCYGCLVDMLSR----NGYLEDAKHVIEI  712 (796)
Q Consensus       644 ~~g~~p~~~t~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~  712 (796)
                      +.|   +...+..|...|..    .+++++|..+|++..   ...|+   +..+..|..+|..    .+++++|.+++++
T Consensus        81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~---~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~  154 (212)
T 3rjv_A           81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAA---RDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG  154 (212)
T ss_dssp             HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT---SSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred             HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH---HcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            754   55566667777766    778888888888887   33443   6777788888887    7788889888888


Q ss_pred             C-CCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHccCC
Q 036290          713 M-PFQPSPTVYRSLLSGCRIH-G-----NKELGEWASEKLLLLLP  750 (796)
Q Consensus       713 ~-~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~p  750 (796)
                      . ...++...+..|...|..- |     |.++|...++++.+..+
T Consensus       155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            7 3334566777777776543 3     88899999988887654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.61  E-value=2.1e-05  Score=84.17  Aligned_cols=370  Identities=9%  Similarity=-0.011  Sum_probs=210.6

Q ss_pred             hCC-CccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-hHHH
Q 036290          324 ENK-NPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGA-VEMA  401 (796)
Q Consensus       324 ~~~-~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~-~~~A  401 (796)
                      +.| +++.|..+|+.+...  -|.              ++.+.+..+|+.....  .|+...|...+....+.+. .+..
T Consensus         6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i   67 (493)
T 2uy1_A            6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL   67 (493)
T ss_dssp             ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred             HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence            345 377788888877653  233              7888888888887774  4677788777777766653 2344


Q ss_pred             HHHHHhCC------CCChhhHHHHHHHHH----hcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHH
Q 036290          402 HSVFDNVS------YKNITTWNELLSGYC----FNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIH  471 (796)
Q Consensus       402 ~~~~~~~~------~~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~  471 (796)
                      ..+|+...      ..+...|...+.-+.    .+++.+.+.++|++........-...|...... ....+...+..++
T Consensus        68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~  146 (493)
T 2uy1_A           68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIV  146 (493)
T ss_dssp             HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHH
Confidence            44554432      124456666665433    234566677777777653211111222211111 1111112222222


Q ss_pred             HHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCC----CCHhhHHHHHHHHHHcC--C-----hhHHHHHHHHH
Q 036290          472 GAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAER----LDMASWGAMMSALVHQG--H-----NHEAVTIFHSL  540 (796)
Q Consensus       472 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~--~-----~~~A~~~~~~m  540 (796)
                      ....                     +.+..|..+++.+..    .+...|...+.--...+  -     .+.+..+|++.
T Consensus       147 ~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~a  205 (493)
T 2uy1_A          147 GDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYI  205 (493)
T ss_dssp             HHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHH
Confidence            2111                     011112222211111    13335544444322211  1     23466788887


Q ss_pred             HHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHHhccC---C----
Q 036290          541 VEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGAR-MAFDQSF---N----  612 (796)
Q Consensus       541 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~---~----  612 (796)
                      .... +.+...|...+.-+.+.|+.+.|..+++.....  +.+...+..    |....+.++.. .+. +..   .    
T Consensus       206 l~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~-~~~~~~~~~~~  277 (493)
T 2uy1_A          206 LDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLK-RKYSMGEAESA  277 (493)
T ss_dssp             HHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHH-HHTC-------
T ss_pred             HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHH-HHHHhhccchh
Confidence            7653 455677777777788889999999999999888  334333332    22211111111 111 111   0    


Q ss_pred             ---C--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCCHHHHHHHHHHhHhhcCCCCC
Q 036290          613 ---S--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACS-HKGLVDKGCLLFKSMDSQYGMQPS  686 (796)
Q Consensus       613 ---~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~~~A~~~~~~~~~~~~~~p~  686 (796)
                         .  .....|...+....+.+..+.|..+|++. .. ...+...|......-. ..++.+.|..+|+...+.++-  +
T Consensus       278 ~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~  353 (493)
T 2uy1_A          278 EKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--S  353 (493)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--C
T ss_pred             hhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--C
Confidence               0  12345777777777888899999999999 31 1124444432222112 234699999999999866422  2


Q ss_pred             chHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 036290          687 PDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLL  747 (796)
Q Consensus       687 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  747 (796)
                      +..+...++...+.|+.+.|..+++++.  .....|...+.--...|+.+.+..+++++.+
T Consensus       354 ~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          354 TLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4556667888889999999999999983  2567888888888889999999999999885

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.59  E-value=7.9e-06  Score=80.66  Aligned_cols=221  Identities=10%  Similarity=-0.050  Sum_probs=166.0

Q ss_pred             CChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccC--chHHHHHHHHHHHHhCCCCchhHHHHHHHHH----Hhc---
Q 036290          528 GHNHEAVTIFHSLVEAGEKPDE-YILGTILNSCAAIG--AYQRTKSIHPFVIKLGFNTEVYVASAVIDAY----AKC---  597 (796)
Q Consensus       528 ~~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---  597 (796)
                      ...++|+++++++...  .|+. ..|+.--..+...+  +++++.+.++.+....+. +..+|+.-...+    ...   
T Consensus        47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~  123 (306)
T 3dra_A           47 EYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNND  123 (306)
T ss_dssp             CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcccc
Confidence            3446788888887765  4443 34455445555666  888888888888877665 455555554444    444   


Q ss_pred             CCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCC------
Q 036290          598 GDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVS--EAMEIFDKMKLANLQP-SQATFVSVMSACSHKGL------  666 (796)
Q Consensus       598 g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~------  666 (796)
                      +++++++++++.++..  .+...|+.-.-.+.+.|+++  ++++.++++.+  ..| |...|+.-...+.+.|.      
T Consensus       124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~--~d~~N~sAW~~R~~ll~~l~~~~~~~~  201 (306)
T 3dra_A          124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID--TDLKNNSAWSHRFFLLFSKKHLATDNT  201 (306)
T ss_dssp             CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccchhhh
Confidence            7889999988766654  48888888888888888888  99999999998  456 77778777777777776      


Q ss_pred             HHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCChHHHH
Q 036290          667 VDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLED-AKHVIEIM-PF----QPSPTVYRSLLSGCRIHGNKELGE  739 (796)
Q Consensus       667 ~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~g~~~~A~  739 (796)
                      ++++++.++++..   ..|+ ...|+.+..++.+.|+..+ +.++.+++ ..    ..++..+..++..+.+.|+.++|.
T Consensus       202 ~~eEl~~~~~aI~---~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~  278 (306)
T 3dra_A          202 IDEELNYVKDKIV---KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR  278 (306)
T ss_dssp             HHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHH---hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence            8999999999883   4565 7888888888988888544 55677776 22    346788999999999999999999


Q ss_pred             HHHHHHHc-cCCCCCcce
Q 036290          740 WASEKLLL-LLPKNDAAH  756 (796)
Q Consensus       740 ~~~~~~~~-~~p~~~~~~  756 (796)
                      ++++.+.+ .+|-...+|
T Consensus       279 ~~~~~l~~~~Dpir~~yW  296 (306)
T 3dra_A          279 TVYDLLKSKYNPIRSNFW  296 (306)
T ss_dssp             HHHHHHHHTTCGGGHHHH
T ss_pred             HHHHHHHhccChHHHHHH
Confidence            99999996 799766554

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.58  E-value=5.9e-07  Score=84.84  Aligned_cols=130  Identities=12%  Similarity=-0.026  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc
Q 036290          586 VASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHK  664 (796)
Q Consensus       586 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~  664 (796)
                      .+..+...+...|++++|.+.+++.+ .++...|..+...|...|++++|.+.+++..+  ..| +...+..+...+...
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~lg~~~~~~   84 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQT   84 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHc
Confidence            34455666677777777777775554 44666777777777777777777777777766  334 455666666777777


Q ss_pred             CCHHHHHHHHHHhHhhcCC-------------CCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 036290          665 GLVDKGCLLFKSMDSQYGM-------------QPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS  718 (796)
Q Consensus       665 g~~~~A~~~~~~~~~~~~~-------------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~  718 (796)
                      |++++|...|+++.+...-             .|+ ...+..+..++.+.|++++|.+.+++. ...|+
T Consensus        85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  153 (213)
T 1hh8_A           85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  153 (213)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence            7777777777777632110             111 144555555555555555555555554 34444

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.56  E-value=2.3e-06  Score=84.99  Aligned_cols=154  Identities=6%  Similarity=-0.009  Sum_probs=68.4

Q ss_pred             HHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-CChhHHHHH-HHHHHhc
Q 036290          552 LGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-NDVIVYNTL-IMAYAHH  629 (796)
Q Consensus       552 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l-i~~~~~~  629 (796)
                      +..+...+...|+++.|...++...+.... +...+..+...|...|++++|...+++.+.. |+....... ...+...
T Consensus       120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~  198 (287)
T 3qou_A          120 XAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQ  198 (287)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhh
Confidence            333334444455555555555554444333 3344445555555555555555555333322 222211111 1123344


Q ss_pred             CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC---chHHHHHHHHHHhcCChHH
Q 036290          630 GLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS---PDCYGCLVDMLSRNGYLED  705 (796)
Q Consensus       630 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~  705 (796)
                      ++.+.|...+++..+  ..| +...+..+...+...|++++|+..|+++.+.   .|+   ...+..++.++...|+.++
T Consensus       199 ~~~~~a~~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~---~p~~~~~~a~~~l~~~~~~~g~~~~  273 (287)
T 3qou_A          199 AADTPEIQQLQQQVA--ENPEDAALATQLALQLHQVGRNEEALELLFGHLRX---DLTAADGQTRXTFQEILAALGTGDA  273 (287)
T ss_dssp             HTSCHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred             cccCccHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---ccccccchHHHHHHHHHHHcCCCCc
Confidence            444445555555444  233 3344444445555555555555555555422   222   3344444444444444444


Q ss_pred             HHHHHH
Q 036290          706 AKHVIE  711 (796)
Q Consensus       706 A~~~~~  711 (796)
                      |...++
T Consensus       274 a~~~~r  279 (287)
T 3qou_A          274 LASXYR  279 (287)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.56  E-value=3.5e-07  Score=90.98  Aligned_cols=162  Identities=9%  Similarity=-0.049  Sum_probs=130.8

Q ss_pred             CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036290          581 NTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVM  658 (796)
Q Consensus       581 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll  658 (796)
                      +.+...+..+...+...|++++|...|++.+..  .+...+..+...+...|++++|...+++...  ..|+........
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~  191 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVA  191 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHH
Confidence            335566677888899999999999999776653  3778899999999999999999999999887  457654333322


Q ss_pred             -HHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhc
Q 036290          659 -SACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS---PTVYRSLLSGCRIH  732 (796)
Q Consensus       659 -~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~  732 (796)
                       ..+...++.+.|...+++...   ..|+ ...+..+..++...|++++|.+.++++ ...|+   ...+..++..+...
T Consensus       192 ~~~l~~~~~~~~a~~~l~~al~---~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~  268 (287)
T 3qou_A          192 QIELLXQAADTPEIQQLQQQVA---ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL  268 (287)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccCccHHHHHHHHh---cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence             346677788889999988883   4666 788889999999999999999999988 44454   56889999999999


Q ss_pred             CChHHHHHHHHHHHc
Q 036290          733 GNKELGEWASEKLLL  747 (796)
Q Consensus       733 g~~~~A~~~~~~~~~  747 (796)
                      |+.++|...+++.+.
T Consensus       269 g~~~~a~~~~r~al~  283 (287)
T 3qou_A          269 GTGDALASXYRRQLY  283 (287)
T ss_dssp             CTTCHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHH
Confidence            999999999998764

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.55  E-value=1.4e-06  Score=85.35  Aligned_cols=59  Identities=10%  Similarity=0.075  Sum_probs=26.8

Q ss_pred             hhHhHHHHHHHhcCCcchHHHHHhcCCC--C-C---HhhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 036290          484 YICSSLIKSYVNFGQLDNSFEFSNGAER--L-D---MASWGAMMSALVHQGHNHEAVTIFHSLVE  542 (796)
Q Consensus       484 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~  542 (796)
                      ..+-.+...+.+.|++++|...|+.+.+  | +   ...+..+..++.+.|++++|...|++..+
T Consensus        16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~   80 (261)
T 3qky_A           16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ   80 (261)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            3344444444455555555555444432  1 1   23344444444445555555555554443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.55  E-value=1.3e-07  Score=83.13  Aligned_cols=98  Identities=9%  Similarity=-0.047  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 036290          652 ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSG  728 (796)
Q Consensus       652 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~  728 (796)
                      ..+..+...+.+.|++++|+..|+++.   .+.|+ +..|..+..+|.+.|++++|++.|++. ...| ++..|..+..+
T Consensus        37 ~~~~~lg~~~~~~g~~~eA~~~~~~al---~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~  113 (151)
T 3gyz_A           37 DDIYSYAYDFYNKGRIEEAEVFFRFLC---IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC  113 (151)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence            344455555566666666666666665   23444 555556666666666666666666655 3333 34556666666


Q ss_pred             HHhcCChHHHHHHHHHHHccCCCC
Q 036290          729 CRIHGNKELGEWASEKLLLLLPKN  752 (796)
Q Consensus       729 ~~~~g~~~~A~~~~~~~~~~~p~~  752 (796)
                      +...|++++|+..+++++++.|++
T Consensus       114 ~~~lg~~~eA~~~~~~al~l~~~~  137 (151)
T 3gyz_A          114 QLRLKAPLKAKECFELVIQHSNDE  137 (151)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCH
Confidence            666666666666666666666654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.54  E-value=1.7e-06  Score=74.26  Aligned_cols=127  Identities=19%  Similarity=0.231  Sum_probs=74.3

Q ss_pred             hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 036290          516 SWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYA  595 (796)
Q Consensus       516 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  595 (796)
                      .|..+...+...|++++|..+++++.+.. +.+...+..+...+...|+++.|...++.+.+.+.               
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---------------   66 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---------------   66 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---------------
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC---------------
Confidence            34555666666677777777777665542 23344444455555555555555555555444322               


Q ss_pred             hcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHH
Q 036290          596 KCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLF  674 (796)
Q Consensus       596 ~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~  674 (796)
                                        .+...+..+...+...|++++|.+.++++.+.  .| +...+..+...+...|++++|...+
T Consensus        67 ------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~  126 (136)
T 2fo7_A           67 ------------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYY  126 (136)
T ss_dssp             ------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             ------------------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHH
Confidence                              23344555556666666666666666666653  23 4555666666777777777777777


Q ss_pred             HHhH
Q 036290          675 KSMD  678 (796)
Q Consensus       675 ~~~~  678 (796)
                      +++.
T Consensus       127 ~~~~  130 (136)
T 2fo7_A          127 QKAL  130 (136)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7665

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.51  E-value=1.5e-06  Score=79.11  Aligned_cols=151  Identities=9%  Similarity=-0.007  Sum_probs=105.7

Q ss_pred             HHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-CChhHHHHHHHH-HHhcCChH
Q 036290          556 LNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-NDVIVYNTLIMA-YAHHGLVS  633 (796)
Q Consensus       556 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~li~~-~~~~g~~~  633 (796)
                      ...+...|+++.|...++...+.... +...+..+..++...|++++|...++..+.. |+...+..+... +...++..
T Consensus        13 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~   91 (176)
T 2r5s_A           13 VSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAES   91 (176)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccc
Confidence            33444555555555555554443322 5667777888888889999999988665543 333333222211 22223344


Q ss_pred             HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC---chHHHHHHHHHHhcCChHHHHHH
Q 036290          634 EAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS---PDCYGCLVDMLSRNGYLEDAKHV  709 (796)
Q Consensus       634 ~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~  709 (796)
                      .|...+++..+  ..| +...+..+...+...|++++|...|+++.   ...|+   ...+..+..++...|+.++|...
T Consensus        92 ~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l---~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~  166 (176)
T 2r5s_A           92 PELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNIL---KVNLGAQDGEVKKTFMDILSALGQGNAIASK  166 (176)
T ss_dssp             HHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred             hHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH---HhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence            57888999888  567 56778888899999999999999999998   45565   55788899999999999999988


Q ss_pred             HHh
Q 036290          710 IEI  712 (796)
Q Consensus       710 ~~~  712 (796)
                      +++
T Consensus       167 y~~  169 (176)
T 2r5s_A          167 YRR  169 (176)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.51  E-value=1.5e-07  Score=82.88  Aligned_cols=114  Identities=10%  Similarity=-0.006  Sum_probs=81.8

Q ss_pred             HHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 036290          639 FDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PF  715 (796)
Q Consensus       639 ~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~  715 (796)
                      ++++.+  +.| +...+..+...+...|++++|+..|+++..   ..|+ ...|..+..++...|++++|++.+++. ..
T Consensus        10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l   84 (148)
T 2vgx_A           10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV---LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM   84 (148)
T ss_dssp             HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH---cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            444444  455 444566666777788888888888887773   3454 667777888888888888888888776 33


Q ss_pred             CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceE
Q 036290          716 QP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHV  757 (796)
Q Consensus       716 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  757 (796)
                      .| +...|..+..++...|++++|+..++++++++|+++....
T Consensus        85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  127 (148)
T 2vgx_A           85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE  127 (148)
T ss_dssp             STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred             CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence            44 4567777888888888888888888888888887776543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.51  E-value=3.2e-06  Score=79.69  Aligned_cols=130  Identities=7%  Similarity=-0.112  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHH
Q 036290          618 VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDM  696 (796)
Q Consensus       618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~  696 (796)
                      .+..+...+...|++++|.+.|++.    +.|+...+..+...+...|++++|+..+++....   .|+ ...+..+..+
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~lg~~   80 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGML   80 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHH
Confidence            3456677788999999999999887    3568888999999999999999999999998844   454 7788899999


Q ss_pred             HHhcCChHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc
Q 036290          697 LSRNGYLEDAKHVIEIM-PFQP-S----------------PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDA  754 (796)
Q Consensus       697 ~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  754 (796)
                      +...|++++|.+.+++. ...| +                ...|..+..++...|++++|...++++++.+|++..
T Consensus        81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  156 (213)
T 1hh8_A           81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH  156 (213)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred             HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence            99999999999999887 2222 2                267888899999999999999999999999997643

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.50  E-value=2.5e-06  Score=85.70  Aligned_cols=154  Identities=7%  Similarity=-0.052  Sum_probs=83.2

Q ss_pred             HHHhccCchHHHHHHHHHHHHhCCC-----CchhHHHHHHHHHHhcCCHHHHHHHHhccCCC----C----ChhHHHHHH
Q 036290          557 NSCAAIGAYQRTKSIHPFVIKLGFN-----TEVYVASAVIDAYAKCGDIKGARMAFDQSFNS----N----DVIVYNTLI  623 (796)
Q Consensus       557 ~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~----~~~~~~~li  623 (796)
                      ..+...|+++.|...+....+....     .....++.+...|...|++++|...+++.+..    .    -..++..+.
T Consensus        44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg  123 (307)
T 2ifu_A           44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG  123 (307)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3455667777777666655542110     01235555666666666666666666443321    1    123455555


Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHhccCCHHHHHHHHHHhHhhc---CCCCC-chHHHH
Q 036290          624 MAYAHHGLVSEAMEIFDKMKLANLQPS-------QATFVSVMSACSHKGLVDKGCLLFKSMDSQY---GMQPS-PDCYGC  692 (796)
Q Consensus       624 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~p~-~~~~~~  692 (796)
                      ..|.. |++++|+..|++..+  +.|+       ..++..+...+...|++++|+..|++.....   +..+. ...+..
T Consensus       124 ~~~~~-g~~~~A~~~~~~Al~--~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  200 (307)
T 2ifu_A          124 KLMEP-LDLSKAVHLYQQAAA--VFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA  200 (307)
T ss_dssp             HHHTT-TCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHc-CCHHHHHHHHHHHHH--HHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence            66655 666666666666665  2221       2345555666666666666666666665321   11111 124445


Q ss_pred             HHHHHHhcCChHHHHHHHHhC
Q 036290          693 LVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       693 l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      ++.++...|++++|...+++.
T Consensus       201 ~g~~~~~~g~~~~A~~~~~~a  221 (307)
T 2ifu_A          201 QVLVQLHRADYVAAQKCVRES  221 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHH
Confidence            555566666666666666654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.49  E-value=1.5e-05  Score=79.40  Aligned_cols=159  Identities=11%  Similarity=-0.048  Sum_probs=121.3

Q ss_pred             HHHHHHhcCCHHHHHHHHhccCCCC----C----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-C----HHHHHH
Q 036290          590 VIDAYAKCGDIKGARMAFDQSFNSN----D----VIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-S----QATFVS  656 (796)
Q Consensus       590 li~~~~~~g~~~~A~~~~~~~~~~~----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~----~~t~~~  656 (796)
                      .+..+...|++++|...+++.....    +    ...+..+...+...|++++|+..+++..+..... +    ..+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            4677888999999999996655532    2    1133346666777889999999999998843332 3    236888


Q ss_pred             HHHHHhccCCHHHHHHHHHHhHhhc----CCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HHHHH
Q 036290          657 VMSACSHKGLVDKGCLLFKSMDSQY----GMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-------PFQPS-PTVYR  723 (796)
Q Consensus       657 ll~~~~~~g~~~~A~~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~  723 (796)
                      +...|...|++++|..+++++.+..    +..+. ..++..++.+|.+.|++++|.+.+++.       +..+. ..+|.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            8899999999999999999988422    11222 457889999999999999999999876       22222 56888


Q ss_pred             HHHHHHHhcCC-hHHHHHHHHHHHcc
Q 036290          724 SLLSGCRIHGN-KELGEWASEKLLLL  748 (796)
Q Consensus       724 ~l~~~~~~~g~-~~~A~~~~~~~~~~  748 (796)
                      .+..++.+.|+ +++|...+++++++
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            99999999995 69999999999875

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.46  E-value=6.4e-07  Score=86.20  Aligned_cols=138  Identities=12%  Similarity=-0.041  Sum_probs=102.5

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC--chHHHHHHHH
Q 036290          619 YNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS--PDCYGCLVDM  696 (796)
Q Consensus       619 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~  696 (796)
                      +-.+...+...|++++|.++|+.+..  ..|+......+...+.+.+++++|+..|+..... . .|.  ...+..+..+
T Consensus       105 ~LayA~~L~~~g~y~eA~~~l~~~~~--~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~a  180 (282)
T 4f3v_A          105 TMGFAACEAAQGNYADAMEALEAAPV--AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVA  180 (282)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTSSCC--TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHH
Confidence            34566777888899999988888876  3464445445555778889999999999755411 1 111  2367778899


Q ss_pred             HHhcCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290          697 LSRNGYLEDAKHVIEIMP---FQPS--PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK  761 (796)
Q Consensus       697 ~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  761 (796)
                      +.+.|++++|++.|++..   ..|.  ...+.....++.+.|+.++|...+++++..+|+ +.++..|.+
T Consensus       181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~  249 (282)
T 4f3v_A          181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD  249 (282)
T ss_dssp             HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred             HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence            999999999999999882   2143  346777888889999999999999999999998 777666655

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.45  E-value=5.6e-06  Score=83.18  Aligned_cols=185  Identities=8%  Similarity=-0.069  Sum_probs=118.6

Q ss_pred             HHHHHHcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCchHHHHHHHHHHHHhC--C-CC--chhHHHHH
Q 036290          521 MSALVHQGHNHEAVTIFHSLVEA----GEKP-DEYILGTILNSCAAIGAYQRTKSIHPFVIKLG--F-NT--EVYVASAV  590 (796)
Q Consensus       521 i~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~-~~--~~~~~~~l  590 (796)
                      ...|...|++++|...|.+..+.    +-.+ -..+|..+...+...|+++.|...++...+.-  . .+  ....+..+
T Consensus        43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l  122 (307)
T 2ifu_A           43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA  122 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34555566666666666655332    1001 12355666667777777777777777665531  1 11  23567778


Q ss_pred             HHHHHhcCCHHHHHHHHhccCCC----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHH
Q 036290          591 IDAYAKCGDIKGARMAFDQSFNS----N----DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLA----NLQPS-QATFVSV  657 (796)
Q Consensus       591 i~~~~~~g~~~~A~~~~~~~~~~----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~l  657 (796)
                      ...|.. |++++|+..+++.+..    .    ...++..+...|...|++++|+..|++..+.    +..+. ...+..+
T Consensus       123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  201 (307)
T 2ifu_A          123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ  201 (307)
T ss_dssp             HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence            888888 9999999999766542    1    1457888899999999999999999998872    11111 1256666


Q ss_pred             HHHHhccCCHHHHHHHHHHhHhhcCCCCCc---hHHHHHHHHHHhcCChHHHHH
Q 036290          658 MSACSHKGLVDKGCLLFKSMDSQYGMQPSP---DCYGCLVDMLSRNGYLEDAKH  708 (796)
Q Consensus       658 l~~~~~~g~~~~A~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~  708 (796)
                      ..++...|++++|...|++.. ...-.++.   .....++..+ ..|+.+.+.+
T Consensus       202 g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          202 VLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            677778899999999999887 31111121   2233444444 5677666555

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.43  E-value=6e-06  Score=82.37  Aligned_cols=163  Identities=11%  Similarity=-0.045  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhccCCCC--C------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC---CC--HH
Q 036290          586 VASAVIDAYAKCGDIKGARMAFDQSFNSN--D------VIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQ---PS--QA  652 (796)
Q Consensus       586 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~--~~  652 (796)
                      .+...+..+...|++++|.+.+.+.+...  .      ...+..+...+...|++++|+..+++..+....   +.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            33445666777888888887775444321  1      122334555667778888888888887753211   11  34


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-----chHHHHHHHHHHhcCChHHHHHHHHhC-C------CCC-CH
Q 036290          653 TFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-----PDCYGCLVDMLSRNGYLEDAKHVIEIM-P------FQP-SP  719 (796)
Q Consensus       653 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~------~~p-~~  719 (796)
                      +|+.+...|...|++++|..+++++.......|+     ..++..++.+|.+.|++++|.+.+++. .      ... -.
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            6777778888888888888888887632222222     257778888888888888888888776 1      111 14


Q ss_pred             HHHHHHHHHHHhcCChHHH-HHHHHHHHcc
Q 036290          720 TVYRSLLSGCRIHGNKELG-EWASEKLLLL  748 (796)
Q Consensus       720 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~  748 (796)
                      .+|..+..++.+.|+.++| ...+++++.+
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            6777888888888888888 7778877754

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.43  E-value=0.00091  Score=71.50  Aligned_cols=46  Identities=11%  Similarity=0.046  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHh
Q 036290          431 DVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKT  477 (796)
Q Consensus       431 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~  477 (796)
                      .+..+|+++... .+-+...|...+.-+.+.|+.+.|..+++.....
T Consensus       197 Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~  242 (493)
T 2uy1_A          197 RMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM  242 (493)
T ss_dssp             HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            456677777664 2344566666666677778888888888888887

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.41  E-value=3e-05  Score=72.87  Aligned_cols=159  Identities=12%  Similarity=0.028  Sum_probs=94.6

Q ss_pred             CHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----chHHHHHHHHHHHHhCCCCchhHHH
Q 036290          513 DMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIG----AYQRTKSIHPFVIKLGFNTEVYVAS  588 (796)
Q Consensus       513 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~  588 (796)
                      ++..+..+...|...+++++|...|++..+.|   +...+..+-..+.. +    +.++|.+.++...+.|   +...+.
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~   89 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI   89 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            45555666666666677777777777766654   34444445555555 4    6666777766665554   445555


Q ss_pred             HHHHHHHh----cCCHHHHHHHHhccCCCCC----hhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 036290          589 AVIDAYAK----CGDIKGARMAFDQSFNSND----VIVYNTLIMAYAH----HGLVSEAMEIFDKMKLANLQPSQATFVS  656 (796)
Q Consensus       589 ~li~~~~~----~g~~~~A~~~~~~~~~~~~----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~  656 (796)
                      .|...|..    .+++++|.+.|++.....+    ...+..|...|..    .+++++|...|++..+.  .++...+..
T Consensus        90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~  167 (212)
T 3rjv_A           90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW  167 (212)
T ss_dssp             HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred             HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence            56666655    5667777777766665554    5666666666666    55667777777766663  223334444


Q ss_pred             HHHHHhcc-C-----CHHHHHHHHHHhHhh
Q 036290          657 VMSACSHK-G-----LVDKGCLLFKSMDSQ  680 (796)
Q Consensus       657 ll~~~~~~-g-----~~~~A~~~~~~~~~~  680 (796)
                      |...|... |     ++++|..+|+...+.
T Consensus       168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~  197 (212)
T 3rjv_A          168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLE  197 (212)
T ss_dssp             HHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence            44444322 2     666666666666533

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.39  E-value=7e-07  Score=78.33  Aligned_cols=101  Identities=10%  Similarity=-0.000  Sum_probs=86.9

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHH
Q 036290          615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGC  692 (796)
Q Consensus       615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~  692 (796)
                      +...+..+...+.+.|++++|...|++..+  +.| +...|..+..++...|++++|+..|+++.   .+.|+ +..|..
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al---~l~P~~~~~~~~  109 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF---ALGKNDYTPVFH  109 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHSSSCCHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHH---hhCCCCcHHHHH
Confidence            566778888889999999999999999998  667 67778888899999999999999999998   45676 888899


Q ss_pred             HHHHHHhcCChHHHHHHHHhC-CCCCCHH
Q 036290          693 LVDMLSRNGYLEDAKHVIEIM-PFQPSPT  720 (796)
Q Consensus       693 l~~~~~~~g~~~~A~~~~~~~-~~~p~~~  720 (796)
                      +..+|.+.|++++|.+.|++. ...|+..
T Consensus       110 lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          110 TGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            999999999999999999987 5566654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.37  E-value=9.5e-07  Score=80.55  Aligned_cols=129  Identities=10%  Similarity=0.070  Sum_probs=100.7

Q ss_pred             HhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHH-HHhcCCh
Q 036290          627 AHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDM-LSRNGYL  703 (796)
Q Consensus       627 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~  703 (796)
                      ...|++++|...+++..+  ..| +...+..+...+...|++++|...|+++...   .|+ ...+..+..+ +...|++
T Consensus        21 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~   95 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQH   95 (177)
T ss_dssp             C-----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTC
T ss_pred             hhccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCc
Confidence            456788889888888887  445 6677888888999999999999999998843   454 6777788888 7788998


Q ss_pred             --HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEec
Q 036290          704 --EDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLS  760 (796)
Q Consensus       704 --~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~  760 (796)
                        ++|.+.++++ ...| +...|..+...+...|++++|...++++++.+|+++.....+.
T Consensus        96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  156 (177)
T 2e2e_A           96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVE  156 (177)
T ss_dssp             CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHH
T ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence              9999999887 3444 4678888888999999999999999999999999876654443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.36  E-value=2.1e-05  Score=74.71  Aligned_cols=54  Identities=15%  Similarity=0.118  Sum_probs=38.1

Q ss_pred             HHHHHhccCCHHHHHHHHHHhHhhcCCCCC----chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          657 VMSACSHKGLVDKGCLLFKSMDSQYGMQPS----PDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       657 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      +...+.+.|++++|+..|+++.+.   .|+    ...+..+..++.+.|++++|.+.++.+
T Consensus       153 ~a~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l  210 (225)
T 2yhc_A          153 VAEYYTERGAWVAVVNRVEGMLRD---YPDTQATRDALPLMENAYRQMQMNAQAEKVAKII  210 (225)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH---STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCcHHHHHHHHHHHHHH---CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            445667777888888888777744   344    245667777788888888888777766

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.35  E-value=6.3e-07  Score=78.22  Aligned_cols=102  Identities=12%  Similarity=-0.011  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 036290          652 ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSG  728 (796)
Q Consensus       652 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~  728 (796)
                      ..+..+...+...|++++|...|+++..   ..|+ ...|..+..++.+.|++++|.+.+++. ...| ++..|..+..+
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   95 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCM---LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC   95 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence            3344455566666677777776666662   2443 555666666667777777777766665 2333 34556666666


Q ss_pred             HHhcCChHHHHHHHHHHHccCCCCCcce
Q 036290          729 CRIHGNKELGEWASEKLLLLLPKNDAAH  756 (796)
Q Consensus       729 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~  756 (796)
                      +...|++++|...++++++++|+++...
T Consensus        96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~  123 (142)
T 2xcb_A           96 HLQLGDLDGAESGFYSARALAAAQPAHE  123 (142)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTCGGGH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCcchH
Confidence            7777777777777777777777666543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.34  E-value=3.4e-06  Score=93.23  Aligned_cols=150  Identities=9%  Similarity=-0.020  Sum_probs=93.3

Q ss_pred             cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 036290          527 QGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMA  606 (796)
Q Consensus       527 ~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  606 (796)
                      .|++++|.+.+++..+.. +-+...+..+...+...|++++|.+.++...+.... +...+..+..+|...|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence            467788888888776542 234566777777777788888888888777775443 466777777777777888888777


Q ss_pred             HhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc---CCHHHHHHHHHHhHhh
Q 036290          607 FDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHK---GLVDKGCLLFKSMDSQ  680 (796)
Q Consensus       607 ~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~---g~~~~A~~~~~~~~~~  680 (796)
                      +++.+..  .+...+..+...|...|++++|.+.+++..+  ..| +...+..+...+...   |++++|.+.+++..+.
T Consensus        80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ--LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            7655543  3566777777777778888888888777777  445 455666777777777   7777788777777733

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.33  E-value=2.8e-06  Score=72.12  Aligned_cols=104  Identities=11%  Similarity=0.011  Sum_probs=75.4

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHH
Q 036290          617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLV  694 (796)
Q Consensus       617 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~  694 (796)
                      ..+......|.+.|++++|++.|++..+  +.| +...|..+..++.+.|++++|+..++++.   .+.|+ ...|..+.
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~p~~~~a~~~lg   88 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCI---RLDSKFIKGYIRKA   88 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHH---HhhhhhhHHHHHHH
Confidence            3455667777888888888888888777  456 56677777788888888888888888877   34555 67777888


Q ss_pred             HHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHH
Q 036290          695 DMLSRNGYLEDAKHVIEIM-PFQPSP-TVYRSL  725 (796)
Q Consensus       695 ~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l  725 (796)
                      .++...|++++|.+.|++. .+.|+. ..+..+
T Consensus        89 ~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l  121 (126)
T 4gco_A           89 ACLVAMREWSKAQRAYEDALQVDPSNEEAREGV  121 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence            8888888888888888776 455543 334433

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.31  E-value=0.00016  Score=72.03  Aligned_cols=223  Identities=9%  Similarity=0.035  Sum_probs=161.7

Q ss_pred             HHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccC-chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-C-C
Q 036290          524 LVHQGHNHEAVTIFHSLVEAGEKPDE-YILGTILNSCAAIG-AYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKC-G-D  599 (796)
Q Consensus       524 ~~~~~~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~  599 (796)
                      ..+.+..++|+++++++...  .|+. ..|+.--..+...+ .++++.++++.+.....+ +..+|+.-...+.+. + +
T Consensus        64 ~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~  140 (349)
T 3q7a_A           64 AAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQD  140 (349)
T ss_dssp             HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSC
T ss_pred             HHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCC
Confidence            34445667899999998876  4443 44555444555566 588999999998887766 677777777777776 6 8


Q ss_pred             HHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCC--
Q 036290          600 IKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVS--------EAMEIFDKMKLANLQP-SQATFVSVMSACSHKGL--  666 (796)
Q Consensus       600 ~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~--  666 (796)
                      +++++++++.++..  .+...|+--.-.+.+.|.++        ++++.++++.+  ..| |...|+.....+.+.++  
T Consensus       141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~--~dp~N~SAW~~R~~lL~~l~~~~  218 (349)
T 3q7a_A          141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR--VDGRNNSAWGWRWYLRVSRPGAE  218 (349)
T ss_dssp             CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHTTSTTCC
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccc
Confidence            89999999777765  47788887666666666666        89999999998  456 77788888888877776  


Q ss_pred             -----HHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCCh--------------------HHHHHHHHhC-CC----
Q 036290          667 -----VDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYL--------------------EDAKHVIEIM-PF----  715 (796)
Q Consensus       667 -----~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~-~~----  715 (796)
                           +++++++++++.   ...|+ ...|..+-..+.+.|+.                    .+..++..++ ..    
T Consensus       219 ~~~~~~~eELe~~~~aI---~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (349)
T 3q7a_A          219 TSSRSLQDELIYILKSI---HLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPE  295 (349)
T ss_dssp             CCHHHHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCS
T ss_pred             cchHHHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccc
Confidence                 789999999888   34666 77777777777777654                    3344444444 21    


Q ss_pred             ---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-ccCCCCCc
Q 036290          716 ---QPSPTVYRSLLSGCRIHGNKELGEWASEKLL-LLLPKNDA  754 (796)
Q Consensus       716 ---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~  754 (796)
                         .+.+..+..|+..|...|+.++|.++++.+. +.||-...
T Consensus       296 ~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~  338 (349)
T 3q7a_A          296 DTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAG  338 (349)
T ss_dssp             SCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHH
T ss_pred             ccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHH
Confidence               2567788999999999999999999999987 67885443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.30  E-value=5.3e-06  Score=77.38  Aligned_cols=134  Identities=13%  Similarity=-0.007  Sum_probs=69.9

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-C--
Q 036290          615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKL----ANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP-S--  686 (796)
Q Consensus       615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~--  686 (796)
                      ....+..+...+...|++++|...+++..+    .+..| ...++..+...+...|++++|...+++......-.+ +  
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  104 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL  104 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence            334455555555555566655555555443    11112 223455555566666666666666665553211112 1  


Q ss_pred             --chHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 036290          687 --PDCYGCLVDMLSRNGYLEDAKHVIEIM----PFQPSP----TVYRSLLSGCRIHGNKELGEWASEKLLLL  748 (796)
Q Consensus       687 --~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  748 (796)
                        ...+..+..++...|++++|.+.+++.    ...++.    .++..+...+...|++++|.+.+++++++
T Consensus       105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  176 (203)
T 3gw4_A          105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI  176 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence              334555666666666666666666554    111111    23455556666666666666666666654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.27  E-value=6.3e-06  Score=73.90  Aligned_cols=127  Identities=10%  Similarity=-0.069  Sum_probs=99.1

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHH
Q 036290          617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLV  694 (796)
Q Consensus       617 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~  694 (796)
                      ..|..+...+...|++++|...+++..+  ..| +...+..+...+...|++++|...+++....   .|+ ...+..++
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a   88 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRA   88 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHH
Confidence            4566777888889999999999998887  445 6677888888889999999999999988844   454 77888889


Q ss_pred             HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHH--HHHHHhcCChHHHHHHHHHHHcc
Q 036290          695 DMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSL--LSGCRIHGNKELGEWASEKLLLL  748 (796)
Q Consensus       695 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~  748 (796)
                      .++...|++++|.+.+++. ...| +...+..+  +..+...|++++|...+++..+.
T Consensus        89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A           89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            9999999999999999887 3334 44455333  33477889999999999887654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.25  E-value=5.5e-06  Score=68.32  Aligned_cols=101  Identities=13%  Similarity=0.053  Sum_probs=81.0

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHH
Q 036290          650 SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP---SPTVYRS  724 (796)
Q Consensus       650 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~  724 (796)
                      +...+..+...+...|++++|...++++.+.   .|+ ...+..+..++...|++++|.+.+++. ...|   +...|..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            4455666777788888888888888888743   343 667788888888999999999888887 3444   4678888


Q ss_pred             HHHHHHhc-CChHHHHHHHHHHHccCCCCC
Q 036290          725 LLSGCRIH-GNKELGEWASEKLLLLLPKND  753 (796)
Q Consensus       725 l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~  753 (796)
                      +..++... |++++|.+.++++++..|+++
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            89999999 999999999999999999775

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.24  E-value=0.00052  Score=67.62  Aligned_cols=166  Identities=5%  Similarity=-0.127  Sum_probs=77.5

Q ss_pred             chHHHHHHHHHHhcCCcccHHH-HHHHHHHhcccC--cHHHHHHHHHHHHHhCCCCCchhHhHHHHHH----Hhc---CC
Q 036290          429 DADVLKTFCNIWESGVEVNGCT-FFYVVETCCRSE--NQQMVGQIHGAIIKTGFSSCGYICSSLIKSY----VNF---GQ  498 (796)
Q Consensus       429 ~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~  498 (796)
                      .++|+.++..+..  +.|+..| |+.--..+...+  +++++.+.++.+.... |-+..+++.-...+    ...   ++
T Consensus        49 s~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~  125 (306)
T 3dra_A           49 SERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD  125 (306)
T ss_dssp             SHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred             CHHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence            3456666666555  3343322 233223333333  5555666555555543 33333443332222    233   45


Q ss_pred             cchHHHHHhcCCC---CCHhhHHHHHHHHHHcCChh--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc------hHH
Q 036290          499 LDNSFEFSNGAER---LDMASWGAMMSALVHQGHNH--EAVTIFHSLVEAGEKPDEYILGTILNSCAAIGA------YQR  567 (796)
Q Consensus       499 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~------~~~  567 (796)
                      +++++++++.+.+   .+..+|+.-...+.+.|.++  ++++.++++.+.. .-|...|+.-.......+.      +++
T Consensus       126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e  204 (306)
T 3dra_A          126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE  204 (306)
T ss_dssp             THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence            5555555555543   34445555555555555555  6666666665543 2334444433333333333      444


Q ss_pred             HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 036290          568 TKSIHPFVIKLGFNTEVYVASAVIDAYAKCGD  599 (796)
Q Consensus       568 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  599 (796)
                      +.+.++.++...+. |...|+.+...+.+.|+
T Consensus       205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~  235 (306)
T 3dra_A          205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDR  235 (306)
T ss_dssp             HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCC
Confidence            55555554444433 44444444444444444

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.24  E-value=2.1e-06  Score=72.52  Aligned_cols=101  Identities=15%  Similarity=0.168  Sum_probs=53.9

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 036290          653 TFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP-SPDCYGCLVDMLSRNGYLEDAKHVIEIM-PF-QPSPTVYRSLLSGC  729 (796)
Q Consensus       653 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~  729 (796)
                      .+..+...+...|++++|.+.++++...   .| +...+..++.++.+.|++++|...++++ .. +.+..+|..+...+
T Consensus        11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            3444445555555555555555555422   22 2444555555555555555555555554 11 22344555566666


Q ss_pred             HhcCChHHHHHHHHHHHccCCCCCcce
Q 036290          730 RIHGNKELGEWASEKLLLLLPKNDAAH  756 (796)
Q Consensus       730 ~~~g~~~~A~~~~~~~~~~~p~~~~~~  756 (796)
                      ...|++++|...++++++.+|+++..+
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~  114 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALELDPNNAEAK  114 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCcHHHH
Confidence            666666666666666666666555443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.23  E-value=2.6e-05  Score=72.60  Aligned_cols=129  Identities=14%  Similarity=0.030  Sum_probs=81.9

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhccCC------C--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC--C
Q 036290          585 YVASAVIDAYAKCGDIKGARMAFDQSFN------S--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLA----NLQP--S  650 (796)
Q Consensus       585 ~~~~~li~~~~~~g~~~~A~~~~~~~~~------~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p--~  650 (796)
                      ..+..+...+...|++++|...+++.+.      .  .....+..+...+...|++++|...+++..+.    +-.|  .
T Consensus        27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  106 (203)
T 3gw4_A           27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA  106 (203)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence            3444444555555555555555543332      1  13345666777777888888888887776552    1122  1


Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          651 QATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS----PDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       651 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      ...+..+...+...|++++|...+++......-..+    ..++..+..++...|++++|.+.+++.
T Consensus       107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  173 (203)
T 3gw4_A          107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA  173 (203)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            234667777888899999999998887643111122    344677888899999999999888764

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.22  E-value=3.3e-06  Score=75.74  Aligned_cols=98  Identities=17%  Similarity=0.062  Sum_probs=47.3

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 036290          654 FVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCR  730 (796)
Q Consensus       654 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~  730 (796)
                      +..+...+...|++++|+..|++...   +.|+ ...|..+..+|.+.|++++|++.+++. ...| +...|..+..++.
T Consensus        14 ~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   90 (164)
T 3sz7_A           14 LKSEGNAAMARKEYSKAIDLYTQALS---IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF   90 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH---hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            34444444444455555554444442   2232 444444555555555555555555444 2222 2344555555555


Q ss_pred             hcCChHHHHHHHHHHHccCCCCCc
Q 036290          731 IHGNKELGEWASEKLLLLLPKNDA  754 (796)
Q Consensus       731 ~~g~~~~A~~~~~~~~~~~p~~~~  754 (796)
                      ..|++++|...++++++++|+++.
T Consensus        91 ~~g~~~~A~~~~~~al~~~p~~~~  114 (164)
T 3sz7_A           91 DMADYKGAKEAYEKGIEAEGNGGS  114 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred             HccCHHHHHHHHHHHHHhCCCchH
Confidence            555555555555555555555555

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.22  E-value=5.7e-06  Score=72.56  Aligned_cols=94  Identities=15%  Similarity=0.158  Sum_probs=76.4

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHH
Q 036290          615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGC  692 (796)
Q Consensus       615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~  692 (796)
                      +...+..+...+...|++++|...|++..+  ..| +...|..+..++...|++++|+..|+++..   +.|+ +..+..
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~   94 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV---MDIXEPRFPFH   94 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCTHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCchHHHH
Confidence            555667777888888999999999988887  556 666777788888889999999999988873   4565 777888


Q ss_pred             HHHHHHhcCChHHHHHHHHhC
Q 036290          693 LVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       693 l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      +..+|...|++++|.+.+++.
T Consensus        95 lg~~~~~~g~~~~A~~~~~~a  115 (148)
T 2vgx_A           95 AAECLLQXGELAEAESGLFLA  115 (148)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHH
Confidence            888899999999999888877

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.21  E-value=2.7e-06  Score=71.57  Aligned_cols=98  Identities=13%  Similarity=0.054  Sum_probs=73.1

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 036290          654 FVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCR  730 (796)
Q Consensus       654 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~  730 (796)
                      +..+...+.+.|++++|+..++++.+   ..|+ ...|..+..++.+.|++++|+..+++. ...| +...|..+..++.
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~   96 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   96 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            44555677788888888888888873   4565 777888888888889999999888887 4455 4567888888888


Q ss_pred             hcCChHHHHHHHHHHHccCCCCCc
Q 036290          731 IHGNKELGEWASEKLLLLLPKNDA  754 (796)
Q Consensus       731 ~~g~~~~A~~~~~~~~~~~p~~~~  754 (796)
                      ..|++++|...++++++.+|+++.
T Consensus        97 ~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           97 NEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHHHC-------
T ss_pred             HcCCHHHHHHHHHHHHHhCcCCCC
Confidence            999999999999999999987653

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.20  E-value=3.1e-06  Score=72.54  Aligned_cols=114  Identities=9%  Similarity=-0.027  Sum_probs=66.3

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHH
Q 036290          615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGC  692 (796)
Q Consensus       615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~  692 (796)
                      +...|..+...+...|++++|.+.+++..+  ..| +...+..+...+...|++++|...++++.+.   .|+ ...+..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~   89 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL---EPTFIKGYTR   89 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCchHHHHH
Confidence            445566666666777777777777777666  344 4555666666666667777777766666632   333 455555


Q ss_pred             HHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 036290          693 LVDMLSRNGYLEDAKHVIEIM-PFQPS-PTVYRSLLSGCRIHG  733 (796)
Q Consensus       693 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g  733 (796)
                      +..++.+.|++++|.+.+++. ...|+ ...+..+..++...|
T Consensus        90 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           90 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            666666666666666666555 22332 234444444444433

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.19  E-value=3.4e-06  Score=70.36  Aligned_cols=102  Identities=12%  Similarity=0.021  Sum_probs=58.1

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 036290          653 TFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP-SPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGC  729 (796)
Q Consensus       653 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~  729 (796)
                      .+..+...+...|++++|...+++....   .| +...+..+..++...|++++|.+.+++. ...| +...|..+..++
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            3444445555555666666666555522   23 2445555556666666666666666555 2223 345566666666


Q ss_pred             HhcCChHHHHHHHHHHHccCCCCCcceE
Q 036290          730 RIHGNKELGEWASEKLLLLLPKNDAAHV  757 (796)
Q Consensus       730 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~  757 (796)
                      ...|++++|...++++++.+|+++..+.
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~  110 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEANNPQLKE  110 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCCHHHHH
Confidence            6666777777777777666666655443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.18  E-value=1.4e-05  Score=78.92  Aligned_cols=191  Identities=10%  Similarity=-0.087  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHH
Q 036290          550 YILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYA  627 (796)
Q Consensus       550 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~  627 (796)
                      ..+..+...+...|+++.|...++...+.... +...+..+..+|.+.|++++|...+++.+..  .+...+..+..+|.
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (281)
T 2c2l_A            5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            34444445555566666666666655554333 5667777888888888899988888776664  36778888999999


Q ss_pred             hcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHH
Q 036290          628 HHGLVSEAMEIFDKMKLANLQPSQ-ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDA  706 (796)
Q Consensus       628 ~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A  706 (796)
                      ..|++++|...|++..+  +.|+. ..+...+....+   ...+.... ..... ....+......+...+  .|++++|
T Consensus        84 ~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~-~~~~~~~i~~~l~~l~--~~~~~~A  154 (281)
T 2c2l_A           84 EMESYDEAIANLQRAYS--LAKEQRLNFGDDIPSALR---IAKKKRWN-SIEER-RIHQESELHSYLTRLI--AAERERE  154 (281)
T ss_dssp             HTTCHHHHHHHHHHHHH--HHHHTTCCCCSHHHHHHH---HHHHHHHH-HHHHT-CCCCCCHHHHHHHHHH--HHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH--hCccchhhHHHHHHHHHH---HHHHHHHH-HHHHH-HHhhhHHHHHHHHHHH--HHHHHHH
Confidence            99999999999999877  34422 112222222111   11122222 12212 3445555555554433  6899999


Q ss_pred             HHHHHhC-CCCCCHHHH-HHHHHHHHhc-CChHHHHHHHHHHHccCC
Q 036290          707 KHVIEIM-PFQPSPTVY-RSLLSGCRIH-GNKELGEWASEKLLLLLP  750 (796)
Q Consensus       707 ~~~~~~~-~~~p~~~~~-~~l~~~~~~~-g~~~~A~~~~~~~~~~~p  750 (796)
                      .+.+++. ...|+.... ..+...+.+. +..++|.++++++.+..+
T Consensus       155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~  201 (281)
T 2c2l_A          155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRK  201 (281)
T ss_dssp             HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTS
T ss_pred             HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence            9988877 567765433 3443334444 678899999998887543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.18  E-value=2.1e-06  Score=72.94  Aligned_cols=93  Identities=9%  Similarity=-0.112  Sum_probs=50.0

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 036290          654 FVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCR  730 (796)
Q Consensus       654 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~  730 (796)
                      +..+...+...|++++|+..|++..+.   .|+ ...|..+..++.+.|++++|++.+++. ...| +...|..+..++.
T Consensus         7 ~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            7 ARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            444444455555555555555555522   333 455555555555555555555555554 2233 3445555555666


Q ss_pred             hcCChHHHHHHHHHHHccC
Q 036290          731 IHGNKELGEWASEKLLLLL  749 (796)
Q Consensus       731 ~~g~~~~A~~~~~~~~~~~  749 (796)
                      ..|++++|...++++++++
T Consensus        84 ~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           84 AVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHHhC
Confidence            6666666666666666666

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.17  E-value=8.6e-06  Score=82.82  Aligned_cols=129  Identities=7%  Similarity=-0.039  Sum_probs=103.6

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 036290          615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPS----------------QATFVSVMSACSHKGLVDKGCLLFKSMD  678 (796)
Q Consensus       615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~ll~~~~~~g~~~~A~~~~~~~~  678 (796)
                      +...|..+...+.+.|++++|...|++..+  +.|+                ...|..+..++.+.|++++|+..++++.
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  223 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL  223 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            455677778888888889999888888887  4554                3678888888999999999999999988


Q ss_pred             hhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH-HHHHHHHHcc
Q 036290          679 SQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELG-EWASEKLLLL  748 (796)
Q Consensus       679 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~  748 (796)
                      .   +.|+ ...|..+..+|...|++++|.+.|++. ...| +...+..+..++.+.|+.++| ...++++++.
T Consensus       224 ~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          224 E---LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             H---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             H---hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3   3565 788888999999999999999999887 4455 456788888888888988888 5677777753

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.16  E-value=0.00022  Score=70.79  Aligned_cols=166  Identities=10%  Similarity=0.079  Sum_probs=90.3

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHhccCchHHHHHHHHHHHHhCCC-CchhHHHHHHHH
Q 036290          520 MMSALVHQGHNHEAVTIFHSLVEAGE-KPDEY----ILGTILNSCAAIGAYQRTKSIHPFVIKLGFN-TEVYVASAVIDA  593 (796)
Q Consensus       520 li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~  593 (796)
                      .+..+...|++++|...+++..+... .|+..    .+..+...+...++++.|...++........ ++..        
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~--------  152 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY--------  152 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT--------
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH--------
Confidence            35667778888888888888765321 12211    1122333444445555555555555442211 1100        


Q ss_pred             HHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH----C-CCCC-CHHHHHHHHHHHhccCCH
Q 036290          594 YAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKL----A-NLQP-SQATFVSVMSACSHKGLV  667 (796)
Q Consensus       594 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p-~~~t~~~ll~~~~~~g~~  667 (796)
                                          ....+++.+...|...|++++|...++++.+    . +..+ ...++..+...|.+.|++
T Consensus       153 --------------------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y  212 (293)
T 3u3w_A          153 --------------------QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY  212 (293)
T ss_dssp             --------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             --------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHH
Confidence                                0012355555556666666666666655552    1 1122 223566677777777777


Q ss_pred             HHHHHHHHHhHhh---cCCCCC-chHHHHHHHHHHhcCC-hHHHHHHHHhC
Q 036290          668 DKGCLLFKSMDSQ---YGMQPS-PDCYGCLVDMLSRNGY-LEDAKHVIEIM  713 (796)
Q Consensus       668 ~~A~~~~~~~~~~---~~~~p~-~~~~~~l~~~~~~~g~-~~~A~~~~~~~  713 (796)
                      ++|..++++...-   .+..+. ..+|..+..+|.+.|+ +++|.+.+++.
T Consensus       213 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A  263 (293)
T 3u3w_A          213 EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence            7777777766532   122222 5667777777777774 47777766655

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.15  E-value=8.6e-06  Score=71.28  Aligned_cols=104  Identities=8%  Similarity=-0.063  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHH
Q 036290          651 QATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS----PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRS  724 (796)
Q Consensus       651 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~  724 (796)
                      ...+..+...+...|++++|...|++..   ...|+    ...+..+..+|...|++++|.+.+++. ...| +...|..
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  104 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR  104 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence            3344444555555555555555555554   33444    345555566666666666666666554 2223 3455666


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHccCCCCCcceE
Q 036290          725 LLSGCRIHGNKELGEWASEKLLLLLPKNDAAHV  757 (796)
Q Consensus       725 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  757 (796)
                      +..++...|++++|...++++++.+|+++.++.
T Consensus       105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  137 (148)
T 2dba_A          105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQE  137 (148)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Confidence            666666667777777777777777776655443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.15  E-value=1.5e-05  Score=68.17  Aligned_cols=106  Identities=12%  Similarity=-0.023  Sum_probs=59.8

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 036290          650 SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLL  726 (796)
Q Consensus       650 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~  726 (796)
                      +...+..+...+...|++++|...+++..   ...|+ ...+..+..++...|++++|.+.+++. ...| +...|..+.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la   91 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAI---KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA   91 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHH---TTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            33445555555666666666666666655   23342 455555666666666666666666555 2222 345555566


Q ss_pred             HHHHhcCChHHHHHHHHHHHccCCCCCcceEE
Q 036290          727 SGCRIHGNKELGEWASEKLLLLLPKNDAAHVL  758 (796)
Q Consensus       727 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  758 (796)
                      .++...|++++|...++++++.+|++...+..
T Consensus        92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  123 (133)
T 2lni_A           92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADG  123 (133)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHH
Confidence            66666666666666666666666655554433

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.15  E-value=1.7e-05  Score=67.40  Aligned_cols=115  Identities=15%  Similarity=0.034  Sum_probs=69.3

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHH
Q 036290          616 VIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCL  693 (796)
Q Consensus       616 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l  693 (796)
                      ...+..+...+...|++++|...+++..+.  .| +...+..+...+...|++++|...+++....   .|+ ...+..+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~   86 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---DPAYSKAYGRM   86 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---CccCHHHHHHH
Confidence            344555666666677777777777766662  34 4555666666666677777777777666632   333 5556666


Q ss_pred             HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 036290          694 VDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNK  735 (796)
Q Consensus       694 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~  735 (796)
                      +.++.+.|++++|.+.+++. ...| +...+..+..++...|+.
T Consensus        87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            66666667777666666665 2233 445555555555555543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.14  E-value=8.9e-06  Score=69.08  Aligned_cols=91  Identities=10%  Similarity=-0.021  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC--------ch
Q 036290          618 VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS--------PD  688 (796)
Q Consensus       618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--------~~  688 (796)
                      .+..+...+.+.|++++|++.|++..+  +.| +...|..+..+|...|++++|++.+++..+.   .|+        ..
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~   84 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLIAK   84 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHHHH
Confidence            345566666666677777777766666  445 4455666666666666777766666666522   222        12


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          689 CYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       689 ~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      +|..+..++...|++++|++.+++.
T Consensus        85 ~~~~lg~~~~~~~~~~~A~~~~~ka  109 (127)
T 4gcn_A           85 AMSRAGNAFQKQNDLSLAVQWFHRS  109 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3444444555555555555555443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.14  E-value=3.6e-06  Score=71.57  Aligned_cols=97  Identities=8%  Similarity=0.024  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CC----CCC----HHH
Q 036290          652 ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PF----QPS----PTV  721 (796)
Q Consensus       652 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~  721 (796)
                      ..+..+...+.+.|++++|+..|+++.   .+.|+ ...|..+..+|.+.|++++|++.+++. .+    .++    ..+
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al---~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~   85 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAI---ELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA   85 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence            456778889999999999999999998   45676 788999999999999999999999887 22    222    246


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 036290          722 YRSLLSGCRIHGNKELGEWASEKLLLLLPK  751 (796)
Q Consensus       722 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  751 (796)
                      |..+..++...|++++|++.++++++..|+
T Consensus        86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence            788888899999999999999999998875

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.13  E-value=2.7e-05  Score=65.49  Aligned_cols=111  Identities=16%  Similarity=0.223  Sum_probs=72.3

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHH
Q 036290          616 VIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP-SPDCYGCL  693 (796)
Q Consensus       616 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l  693 (796)
                      ...|..+...+...|++++|.+.++++.+.  .| +..++..+...+...|++++|..+++++...   .| +...+..+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l   83 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNL   83 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHH
Confidence            445666667777777777777777777663  34 4556666777777777777777777777633   23 35666777


Q ss_pred             HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 036290          694 VDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRI  731 (796)
Q Consensus       694 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~  731 (796)
                      ..++...|++++|.+.++++ ...| +...+..+...+..
T Consensus        84 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           84 GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            77777777777777777766 3333 34445555444433

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.13  E-value=3e-06  Score=83.74  Aligned_cols=171  Identities=9%  Similarity=-0.048  Sum_probs=121.1

Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 036290          583 EVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMS  659 (796)
Q Consensus       583 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~  659 (796)
                      +...+..+...+.+.|++++|...|++.+..  .+...|..+...|...|++++|...+++..+  +.| +...+..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence            4556777888899999999999999776653  3788899999999999999999999999988  567 6677888889


Q ss_pred             HHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 036290          660 ACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELG  738 (796)
Q Consensus       660 ~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A  738 (796)
                      ++...|++++|...|+++.+.   .|+ ...+...+....+.++...... .......++......+.. + ..|+.++|
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A  154 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERERE  154 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHH
Confidence            999999999999999988743   333 1122222222222222111111 222334445544444433 3 36899999


Q ss_pred             HHHHHHHHccCCCCCcceEEecC
Q 036290          739 EWASEKLLLLLPKNDAAHVLLSK  761 (796)
Q Consensus       739 ~~~~~~~~~~~p~~~~~~~~l~~  761 (796)
                      .+.++++++.+|++......+..
T Consensus       155 ~~~~~~al~~~p~~~~~~~~l~~  177 (281)
T 2c2l_A          155 LEECQRNHEGHEDDGHIRAQQAC  177 (281)
T ss_dssp             HTTTSGGGTTTSCHHHHTHHHHH
T ss_pred             HHHHHhhhccccchhhhhhHHHH
Confidence            99999999999987766555543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.13  E-value=8.5e-05  Score=71.44  Aligned_cols=138  Identities=13%  Similarity=0.068  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhccCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHh
Q 036290          586 VASAVIDAYAKCGDIKGARMAFDQSFNS-NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPS--QATFVSVMSACS  662 (796)
Q Consensus       586 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~  662 (796)
                      ....+..++...|++++|.++|+..... |+......+...+.+.+++++|+..|+...... .|.  ...+..+-.++.
T Consensus       104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~  182 (282)
T 4f3v_A          104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA  182 (282)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence            4455677888999999999999655544 433356666678889999999999998665421 121  235777788999


Q ss_pred             ccCCHHHHHHHHHHhHhhcCCCCC--chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHH
Q 036290          663 HKGLVDKGCLLFKSMDSQYGMQPS--PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVYRSL  725 (796)
Q Consensus       663 ~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l  725 (796)
                      ..|++++|+..|++.... ...|.  .........++.+.|+.++|...|+++ ...|+...+..|
T Consensus       183 ~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~~aL  247 (282)
T 4f3v_A          183 NLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAAL  247 (282)
T ss_dssp             HTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            999999999999998722 33254  446677888999999999999999998 456664444433

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.11  E-value=1.9e-05  Score=70.73  Aligned_cols=124  Identities=14%  Similarity=0.075  Sum_probs=87.3

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 036290          585 YVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSAC  661 (796)
Q Consensus       585 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~  661 (796)
                      ..+..+...+...|++++|...+++.+..  .+...+..+...+...|++++|...+++..+  ..| +...+..+...+
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~   91 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHH
Confidence            34455666677777777777777554432  3667777788888888888888888888887  345 566777777888


Q ss_pred             hccCCHHHHHHHHHHhHhhcCCCCC-chHH--HHHHHHHHhcCChHHHHHHHHhC
Q 036290          662 SHKGLVDKGCLLFKSMDSQYGMQPS-PDCY--GCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       662 ~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~--~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      ...|++++|...++++...   .|+ ...+  ..++..+.+.|++++|.+.+++.
T Consensus        92 ~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            8888888888888888743   443 3344  33444467778888888877654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.11  E-value=6.3e-05  Score=74.84  Aligned_cols=124  Identities=12%  Similarity=0.087  Sum_probs=90.6

Q ss_pred             HHHHHHhcCCHHHHHHHHhccCCC----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCC-----HHHHH
Q 036290          590 VIDAYAKCGDIKGARMAFDQSFNS----ND----VIVYNTLIMAYAHHGLVSEAMEIFDKMKLA-NLQPS-----QATFV  655 (796)
Q Consensus       590 li~~~~~~g~~~~A~~~~~~~~~~----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-----~~t~~  655 (796)
                      +...+...|++++|...+++.+..    .+    ..+|+.+...|...|++++|...+++..+. ...|+     ..++.
T Consensus       121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~  200 (293)
T 2qfc_A          121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY  200 (293)
T ss_dssp             HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence            455566777888887777555432    11    347888888999999999999999988731 01222     25788


Q ss_pred             HHHHHHhccCCHHHHHHHHHHhHhhc---CCCCC-chHHHHHHHHHHhcCChHHH-HHHHHhC
Q 036290          656 SVMSACSHKGLVDKGCLLFKSMDSQY---GMQPS-PDCYGCLVDMLSRNGYLEDA-KHVIEIM  713 (796)
Q Consensus       656 ~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~~~A-~~~~~~~  713 (796)
                      .+...|...|++++|+.++++.....   +.... ..+|..+..+|.+.|++++| ...+++.
T Consensus       201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A  263 (293)
T 2qfc_A          201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            88899999999999999999887431   11111 56788899999999999999 7767664

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.08  E-value=6.5e-06  Score=70.12  Aligned_cols=108  Identities=12%  Similarity=0.029  Sum_probs=92.0

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 036290          650 SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP-SPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLL  726 (796)
Q Consensus       650 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~  726 (796)
                      +...+..+...+...|++++|...++++...   .| +...+..++.++...|++++|.+.+++. ...| +...|..+.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~   87 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG   87 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence            4556777888899999999999999999844   44 4788889999999999999999999987 3344 567889999


Q ss_pred             HHHHhcCChHHHHHHHHHHHccCCCCCcceEEec
Q 036290          727 SGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLS  760 (796)
Q Consensus       727 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~  760 (796)
                      ..+...|++++|...++++++.+|+++.++..++
T Consensus        88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  121 (131)
T 2vyi_A           88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLK  121 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHH
Confidence            9999999999999999999999999887765553

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.08  E-value=1.9e-05  Score=66.88  Aligned_cols=92  Identities=9%  Similarity=-0.041  Sum_probs=72.7

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHH
Q 036290          617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLV  694 (796)
Q Consensus       617 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~  694 (796)
                      ..|..+...+...|++++|+..|++..+  ..| +...|..+..++...|++++|+..+++..+   +.|+ ...+..+.
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg   79 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE---KDPNFVRAYIRKA   79 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCcHHHHHHHH
Confidence            4566677778888888888888888887  455 566777888888888888888888888873   3565 67788888


Q ss_pred             HHHHhcCChHHHHHHHHhC
Q 036290          695 DMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       695 ~~~~~~g~~~~A~~~~~~~  713 (796)
                      .++...|++++|.+.+++.
T Consensus        80 ~~~~~~~~~~~A~~~~~~a   98 (126)
T 3upv_A           80 TAQIAVKEYASALETLDAA   98 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCHHHHHHHHHHH
Confidence            8888888888888888876

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.07  E-value=0.00015  Score=71.92  Aligned_cols=188  Identities=7%  Similarity=-0.066  Sum_probs=129.5

Q ss_pred             hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--CHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCC-hHHHHHHH
Q 036290          565 YQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCG--DIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGL-VSEAMEIF  639 (796)
Q Consensus       565 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~~~  639 (796)
                      ++.+..+++.+....+. +..+|+.-..++.+.+  .+++++.+++.++..  .|...|+.-.-.+...|. ++++++.+
T Consensus        90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~  168 (331)
T 3dss_A           90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT  168 (331)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            46677777777766555 6667777666777766  378888888665553  477788877777777777 58888888


Q ss_pred             HHHHHCCCCC-CHHHHHHHHHHHhcc--------------CCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhc---
Q 036290          640 DKMKLANLQP-SQATFVSVMSACSHK--------------GLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRN---  700 (796)
Q Consensus       640 ~~m~~~g~~p-~~~t~~~ll~~~~~~--------------g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~---  700 (796)
                      +++.+  ..| |...|+.....+.+.              +.++++++++....   ...|+ ...|+.+-..+.+.   
T Consensus       169 ~~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai---~~~P~d~SaW~Y~r~ll~~~~~~  243 (331)
T 3dss_A          169 DSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAF---FTDPNDQSAWFYHRWLLGAGSGR  243 (331)
T ss_dssp             HHHHH--HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHH---HHSTTCHHHHHHHHHHHHSSSCG
T ss_pred             HHHHH--HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhccCc
Confidence            88888  445 666676655544433              45788888888887   34666 66666555555554   


Q ss_pred             --------CChHHHHHHHHhC-CCCCCHHHHHHHHHH-----HHhcCChHHHHHHHHHHHccCCCCCcceEEe
Q 036290          701 --------GYLEDAKHVIEIM-PFQPSPTVYRSLLSG-----CRIHGNKELGEWASEKLLLLLPKNDAAHVLL  759 (796)
Q Consensus       701 --------g~~~~A~~~~~~~-~~~p~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  759 (796)
                              +.++++++.++++ ...||. .|..+..+     ....|..++....++++.++||-....|.-|
T Consensus       244 ~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~  315 (331)
T 3dss_A          244 CELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  315 (331)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence                    4578888888887 566765 34332222     2245778899999999999999877766544

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.07  E-value=1.2e-05  Score=69.33  Aligned_cols=99  Identities=8%  Similarity=-0.147  Sum_probs=54.3

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 036290          650 SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLL  726 (796)
Q Consensus       650 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~  726 (796)
                      +...+..+...+...|++++|...|++....   .|+ ...+..+..++...|++++|...+++. ...| +...|..+.
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   84 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   84 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            3444555555555555555555555555522   233 445555555555566666666555554 2222 344555566


Q ss_pred             HHHHhcCChHHHHHHHHHHHccCCC
Q 036290          727 SGCRIHGNKELGEWASEKLLLLLPK  751 (796)
Q Consensus       727 ~~~~~~g~~~~A~~~~~~~~~~~p~  751 (796)
                      .++...|++++|...++++++++|+
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHChh
Confidence            6666666666666666666666555

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.05  E-value=7.1e-06  Score=70.97  Aligned_cols=73  Identities=11%  Similarity=0.104  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhC-CC-------CCCH-HHH----HHHHHHHHhcCChHHHHHHHHHHHccCCCCCcc
Q 036290          689 CYGCLVDMLSRNGYLEDAKHVIEIM-PF-------QPSP-TVY----RSLLSGCRIHGNKELGEWASEKLLLLLPKNDAA  755 (796)
Q Consensus       689 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~p~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  755 (796)
                      .|..+..++.+.|++++|+..+++. ..       .|+. ..|    .....++...|++++|+..|+++++++|++...
T Consensus        59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~  138 (159)
T 2hr2_A           59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE  138 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence            6667777777777777777777665 33       7765 578    899999999999999999999999999999887


Q ss_pred             eEEecC
Q 036290          756 HVLLSK  761 (796)
Q Consensus       756 ~~~l~~  761 (796)
                      .--+..
T Consensus       139 ~~~~~~  144 (159)
T 2hr2_A          139 TPGKER  144 (159)
T ss_dssp             CTTHHH
T ss_pred             HHHHHH
Confidence            655443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.05  E-value=6.8e-06  Score=83.60  Aligned_cols=131  Identities=8%  Similarity=-0.014  Sum_probs=61.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH------------------HHHHHHHHHhccCCHHHHHHHHHHhHhh
Q 036290          619 YNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQA------------------TFVSVMSACSHKGLVDKGCLLFKSMDSQ  680 (796)
Q Consensus       619 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------------------t~~~ll~~~~~~g~~~~A~~~~~~~~~~  680 (796)
                      +..+...+.+.|++++|...|++..+  +.|+..                  .|..+..++.+.|++++|+..++++.. 
T Consensus       182 ~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~-  258 (338)
T 2if4_A          182 RKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT-  258 (338)
T ss_dssp             HHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH--HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence            44445555556666666666666555  334332                  566677777788888888888887773 


Q ss_pred             cCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHH-HHhcCChHHHHHHHHHHHccCCCCCc
Q 036290          681 YGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP-TVYRSLLSG-CRIHGNKELGEWASEKLLLLLPKNDA  754 (796)
Q Consensus       681 ~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~p~~~~  754 (796)
                        +.|+ ...|..+..+|...|++++|.+.|++. ...|+. ..+..+... ....+..+.+...++++++..|+++.
T Consensus       259 --~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          259 --EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             --HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred             --hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence              3454 667777888888888888888888777 455543 445555444 23446677777888888888777654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.05  E-value=4.8e-06  Score=77.46  Aligned_cols=148  Identities=7%  Similarity=-0.036  Sum_probs=81.5

Q ss_pred             HHHhcCCHHHHHHHHhccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----------------H
Q 036290          593 AYAKCGDIKGARMAFDQSFNS---NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQ-----------------A  652 (796)
Q Consensus       593 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----------------~  652 (796)
                      .....|+++.+.+.+ ++...   .....+..+...+...|++++|...|++..+  +.|+.                 .
T Consensus        13 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~   89 (198)
T 2fbn_A           13 GRENLYFQGAKKSIY-DYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQILLDKKKNIEIS   89 (198)
T ss_dssp             ---------CCCSGG-GCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhccccCchh-hCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchhhHHHHHHHHHHH
Confidence            344456666666666 32221   1445566777778888888888888888887  33321                 4


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 036290          653 TFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGC  729 (796)
Q Consensus       653 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~  729 (796)
                      .+..+..++...|++++|+..++++...   .|+ ...+..+..+|...|++++|.+.+++. ...| +...+..+..++
T Consensus        90 ~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  166 (198)
T 2fbn_A           90 CNLNLATCYNKNKDYPKAIDHASKVLKI---DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  166 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            5666666667777777777777776632   343 566666777777777777777777665 3333 344555555555


Q ss_pred             HhcCChHHHH-HHHHHHH
Q 036290          730 RIHGNKELGE-WASEKLL  746 (796)
Q Consensus       730 ~~~g~~~~A~-~~~~~~~  746 (796)
                      ...|+.+++. ..+..++
T Consensus       167 ~~~~~~~~~~~~~~~~~f  184 (198)
T 2fbn_A          167 NKLKEARKKDKLTFGGMF  184 (198)
T ss_dssp             HHHHHHHC----------
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            5555555444 3333333

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.02  E-value=3.7e-05  Score=68.72  Aligned_cols=94  Identities=14%  Similarity=0.051  Sum_probs=79.9

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHH
Q 036290          615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGC  692 (796)
Q Consensus       615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~  692 (796)
                      +...|..+...+...|++++|+..|++..+  +.| +...|..+..++...|++++|+..++++..   +.|+ ...|..
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~   84 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATV---VDPKYSKAWSR   84 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence            455677888888999999999999999988  556 667788888899999999999999999883   4566 788888


Q ss_pred             HHHHHHhcCChHHHHHHHHhC
Q 036290          693 LVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       693 l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      +..+|.+.|++++|.+.+++.
T Consensus        85 lg~~~~~~g~~~~A~~~~~~a  105 (164)
T 3sz7_A           85 LGLARFDMADYKGAKEAYEKG  105 (164)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHH
Confidence            999999999999999999887

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.02  E-value=3.6e-05  Score=66.84  Aligned_cols=94  Identities=15%  Similarity=0.112  Sum_probs=76.2

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHH
Q 036290          615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGC  692 (796)
Q Consensus       615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~  692 (796)
                      +...+..+...+...|++++|...|++...  ..| +...|..+..++...|++++|+..|+++..   +.|+ +..+..
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~   91 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL---MDINEPRFPFH   91 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCTHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCcHHHHH
Confidence            445566677788888999999999998887  456 666777788888889999999999998883   3555 677888


Q ss_pred             HHHHHHhcCChHHHHHHHHhC
Q 036290          693 LVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       693 l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      +..+|...|++++|.+.+++.
T Consensus        92 lg~~~~~~g~~~~A~~~~~~a  112 (142)
T 2xcb_A           92 AAECHLQLGDLDGAESGFYSA  112 (142)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHH
Confidence            888999999999999998877

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.00  E-value=2.2e-05  Score=71.35  Aligned_cols=91  Identities=7%  Similarity=0.006  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH-HhccCCH--HHHHHHHHHhHhhcCCCCC-chHHHH
Q 036290          618 VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSA-CSHKGLV--DKGCLLFKSMDSQYGMQPS-PDCYGC  692 (796)
Q Consensus       618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~-~~~~g~~--~~A~~~~~~~~~~~~~~p~-~~~~~~  692 (796)
                      .|..+...|...|++++|...|++..+  ..| +...+..+..+ +...|++  ++|...++++...   .|+ ...+..
T Consensus        46 ~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~  120 (177)
T 2e2e_A           46 QWALLGEYYLWQNDYSNSLLAYRQALQ--LRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL---DSNEITALML  120 (177)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh---CCCcHHHHHH
Confidence            333444444444444444444444443  222 22333333333 3344444  4444444444421   222 333444


Q ss_pred             HHHHHHhcCChHHHHHHHHhC
Q 036290          693 LVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       693 l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      +..++...|++++|.+.++++
T Consensus       121 la~~~~~~g~~~~A~~~~~~a  141 (177)
T 2e2e_A          121 LASDAFMQANYAQAIELWQKV  141 (177)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHH
Confidence            444444444444444444443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.99  E-value=2e-05  Score=67.10  Aligned_cols=95  Identities=16%  Similarity=0.078  Sum_probs=54.7

Q ss_pred             HHHHhccCCHHHHHHHHHHhHhhcCCCCC-c---hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 036290          658 MSACSHKGLVDKGCLLFKSMDSQYGMQPS-P---DCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS----PTVYRSLLSG  728 (796)
Q Consensus       658 l~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~  728 (796)
                      ...+...|++++|...|+.+.+.   .|+ .   ..+..+..++.+.|++++|.+.+++. ...|+    ...+..+..+
T Consensus         9 a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~   85 (129)
T 2xev_A            9 AFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS   85 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence            34455556666666666665533   233 2   35555666666666666666666655 22232    3445566666


Q ss_pred             HHhcCChHHHHHHHHHHHccCCCCCcc
Q 036290          729 CRIHGNKELGEWASEKLLLLLPKNDAA  755 (796)
Q Consensus       729 ~~~~g~~~~A~~~~~~~~~~~p~~~~~  755 (796)
                      +...|++++|...++++++..|+++.+
T Consensus        86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~  112 (129)
T 2xev_A           86 QYGEGKNTEAQQTLQQVATQYPGSDAA  112 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence            666677777777777777666665544

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.98  E-value=2.6e-05  Score=69.32  Aligned_cols=133  Identities=13%  Similarity=-0.002  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----ch
Q 036290          618 VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQ-PS----QATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS----PD  688 (796)
Q Consensus       618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~  688 (796)
                      ++..+...+...|++++|...+++..+.... ++    ..++..+...+...|++++|...+++......-.++    ..
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            4556666677777777777777776552111 11    135666777788888888888888887643211122    45


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 036290          689 CYGCLVDMLSRNGYLEDAKHVIEIM----PFQPS----PTVYRSLLSGCRIHGNKELGEWASEKLLLLLP  750 (796)
Q Consensus       689 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  750 (796)
                      ++..+..++...|++++|.+.+++.    ...++    ...+..+...+...|++++|...+++++++..
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            6777888888899999998888776    11111    24677788888999999999999999887644

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.96  E-value=2.2e-05  Score=79.81  Aligned_cols=93  Identities=15%  Similarity=0.006  Sum_probs=76.1

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHH
Q 036290          616 VIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCL  693 (796)
Q Consensus       616 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l  693 (796)
                      ...|..+..+|.+.|++++|+..+++..+  +.| +...|..+..++...|++++|+..|+++.   .+.|+ ...+..+
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al---~l~P~~~~a~~~l  270 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALE--LDSNNEKGLSRRGEAHLAVNDFELARADFQKVL---QLYPNNKAAKTQL  270 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HHCCCCHHHHHHH
Confidence            46788888889999999999999999988  556 66778888889999999999999999988   34565 6778888


Q ss_pred             HHHHHhcCChHHH-HHHHHhC
Q 036290          694 VDMLSRNGYLEDA-KHVIEIM  713 (796)
Q Consensus       694 ~~~~~~~g~~~~A-~~~~~~~  713 (796)
                      ..++.+.|+.++| .+.+++|
T Consensus       271 ~~~~~~~~~~~~a~~~~~~~~  291 (336)
T 1p5q_A          271 AVCQQRIRRQLAREKKLYANM  291 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            8899999998888 3455554

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.95  E-value=9e-05  Score=61.43  Aligned_cols=105  Identities=17%  Similarity=0.139  Sum_probs=74.2

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHH
Q 036290          616 VIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCL  693 (796)
Q Consensus       616 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l  693 (796)
                      ...+..+...+...|++++|...+++..+  ..| +...+..+...+...|++++|...+++....   .|+ ...+..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~   78 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL---KPDWGKGYSRK   78 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh---CcccHHHHHHH
Confidence            34566667777778888888888888777  345 5666777777778888888888888887733   444 6677778


Q ss_pred             HHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHH
Q 036290          694 VDMLSRNGYLEDAKHVIEIM-PFQPS-PTVYRSL  725 (796)
Q Consensus       694 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l  725 (796)
                      ..++...|++++|.+.+++. ...|+ ...+..+
T Consensus        79 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  112 (118)
T 1elw_A           79 AAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL  112 (118)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            88888888888888888776 44553 3344433

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.93  E-value=9.9e-05  Score=63.40  Aligned_cols=95  Identities=5%  Similarity=-0.124  Sum_probs=74.9

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHH
Q 036290          614 NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYG  691 (796)
Q Consensus       614 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~  691 (796)
                      .+...|..+...+...|++++|...|++..+  ..| +...+..+..++...|++++|...+++..+.   .|+ ...+.
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~   81 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL---DGQSVKAHF   81 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CchhHHHHH
Confidence            3566777788888888888888888888877  445 5667777788888888888888888888743   454 67788


Q ss_pred             HHHHHHHhcCChHHHHHHHHhC
Q 036290          692 CLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       692 ~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      .+..++...|++++|.+.+++.
T Consensus        82 ~l~~~~~~~~~~~~A~~~~~~a  103 (137)
T 3q49_B           82 FLGQCQLEMESYDEAIANLQRA  103 (137)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHH
Confidence            8888888888888888888876

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.91  E-value=1.4e-05  Score=85.42  Aligned_cols=129  Identities=9%  Similarity=-0.036  Sum_probs=79.2

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCC
Q 036290          625 AYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGY  702 (796)
Q Consensus       625 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~  702 (796)
                      .+.+.|++++|.+.+++..+  ..| +...|..+..++.+.|++++|++.++++.   .+.|+ ...+..+..+|.+.|+
T Consensus        15 ~~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~l~p~~~~~~~~lg~~~~~~g~   89 (477)
T 1wao_1           15 DYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAI---ELDKKYIKGYYRRAASNMALGK   89 (477)
T ss_dssp             STTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HSCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCC
Confidence            34456677777777777766  445 45566667777777777777777777776   33454 5666677777777777


Q ss_pred             hHHHHHHHHhC-CCCC-CHHHHHHHHHH--HHhcCChHHHHHHHH-----------HHHccCCCCCcceEE
Q 036290          703 LEDAKHVIEIM-PFQP-SPTVYRSLLSG--CRIHGNKELGEWASE-----------KLLLLLPKNDAAHVL  758 (796)
Q Consensus       703 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~-----------~~~~~~p~~~~~~~~  758 (796)
                      +++|.+.+++. ...| +...+..+..+  +.+.|++++|++.++           ++++.+|+...++..
T Consensus        90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~  160 (477)
T 1wao_1           90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLE  160 (477)
T ss_dssp             HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCG
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccc
Confidence            77777777766 2233 22344444444  666677777777777           666777766555443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.91  E-value=3.7e-06  Score=78.26  Aligned_cols=136  Identities=12%  Similarity=-0.019  Sum_probs=99.2

Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC--------------ch
Q 036290          624 MAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS--------------PD  688 (796)
Q Consensus       624 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--------------~~  688 (796)
                      ......|+++++.+.|+.-.+  ..+ ....+..+...+...|++++|...|++......-.|+              ..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~   89 (198)
T 2fbn_A           12 SGRENLYFQGAKKSIYDYTDE--EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS   89 (198)
T ss_dssp             ----------CCCSGGGCCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhccccCchhhCCHH--HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence            334445666666666653332  112 3345677778889999999999999999843222221              16


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290          689 CYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK  761 (796)
Q Consensus       689 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  761 (796)
                      .+..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++++|...++++++++|+++.++..+..
T Consensus        90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  164 (198)
T 2fbn_A           90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL  164 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence            8888999999999999999999988 3444 56788999999999999999999999999999999988887766

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.90  E-value=2.8e-05  Score=66.06  Aligned_cols=107  Identities=15%  Similarity=0.084  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCC-CCC----chHHH
Q 036290          618 VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGM-QPS----PDCYG  691 (796)
Q Consensus       618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~p~----~~~~~  691 (796)
                      .|..+...+...|++++|...+++..+.  .| +...+..+...+...|++++|...++++.....- .++    ..++.
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            4455566666666777777766666663  33 4455566666666667777777666666533110 111    44555


Q ss_pred             HHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 036290          692 CLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVYRSLL  726 (796)
Q Consensus       692 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~  726 (796)
                      .+..++.+.|++++|.+.+++. ...|+...+..+.
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~  119 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ  119 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            5666666666666666666555 3334444444333

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.90  E-value=3.4e-05  Score=64.77  Aligned_cols=96  Identities=10%  Similarity=0.023  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHH
Q 036290          618 VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVD  695 (796)
Q Consensus       618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~  695 (796)
                      .+..+...+.+.|++++|...+++..+  ..| +...|..+..++...|++++|+..|++..   .+.|+ ...+..+..
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al---~l~P~~~~~~~~la~   93 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHAR---MLDPKDIAVHAALAV   93 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHH
Confidence            344556667777788888888877777  456 55666677777777788888888887777   34565 666777777


Q ss_pred             HHHhcCChHHHHHHHHhC-CCCCC
Q 036290          696 MLSRNGYLEDAKHVIEIM-PFQPS  718 (796)
Q Consensus       696 ~~~~~g~~~~A~~~~~~~-~~~p~  718 (796)
                      ++...|++++|.+.+++. ...|+
T Consensus        94 ~~~~~g~~~~A~~~~~~al~~~P~  117 (121)
T 1hxi_A           94 SHTNEHNANAALASLRAWLLSQPQ  117 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcC
Confidence            788888888888777766 44443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.85  E-value=1.1e-05  Score=67.45  Aligned_cols=88  Identities=15%  Similarity=0.089  Sum_probs=42.6

Q ss_pred             cCCHHHHHHHHHHhHhhcCC---CCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 036290          664 KGLVDKGCLLFKSMDSQYGM---QPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKEL  737 (796)
Q Consensus       664 ~g~~~~A~~~~~~~~~~~~~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~  737 (796)
                      .|++++|+..|++..   ..   .|+ ...+..+..+|...|++++|++.+++. ...| +..++..+..++...|++++
T Consensus         3 ~g~~~~A~~~~~~al---~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~   79 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAI---ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQ   79 (117)
T ss_dssp             ----CCCHHHHHHHH---SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             CCcHHHHHHHHHHHH---HcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHH
Confidence            344555555555554   22   122 344555555555555555555555554 2222 33445555555555555555


Q ss_pred             HHHHHHHHHccCCCCCc
Q 036290          738 GEWASEKLLLLLPKNDA  754 (796)
Q Consensus       738 A~~~~~~~~~~~p~~~~  754 (796)
                      |+..++++++..|+++.
T Consensus        80 A~~~~~~al~~~p~~~~   96 (117)
T 3k9i_A           80 GVELLLKIIAETSDDET   96 (117)
T ss_dssp             HHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHHhCCCcHH
Confidence            55555555555555543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.85  E-value=0.00016  Score=62.88  Aligned_cols=108  Identities=11%  Similarity=-0.004  Sum_probs=80.6

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chH
Q 036290          615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPS----QATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDC  689 (796)
Q Consensus       615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~  689 (796)
                      +...+..+...+...|++++|...|++..+  ..|+    ...+..+...+...|++++|...+++....   .|+ ...
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~  101 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---DGGDVKA  101 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TSCCHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---CccCHHH
Confidence            566777788888888888888888888887  5565    566777778888888888888888888733   454 677


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 036290          690 YGCLVDMLSRNGYLEDAKHVIEIM-PFQPS-PTVYRSLLS  727 (796)
Q Consensus       690 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~  727 (796)
                      +..+..++...|++++|.+.+++. ...|+ ...+..+..
T Consensus       102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  141 (148)
T 2dba_A          102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN  141 (148)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence            778888888888888888888877 34443 344443333

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.85  E-value=3.1e-05  Score=69.05  Aligned_cols=74  Identities=11%  Similarity=-0.030  Sum_probs=50.4

Q ss_pred             chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC-cceEEec
Q 036290          687 PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKND-AAHVLLS  760 (796)
Q Consensus       687 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~  760 (796)
                      ...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++++++|+++ .....|.
T Consensus        63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~  139 (162)
T 3rkv_A           63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMK  139 (162)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            456666777777777777777777666 3334 456677777777777777777777777777777776 4443443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.84  E-value=7.3e-05  Score=61.31  Aligned_cols=94  Identities=14%  Similarity=0.093  Sum_probs=62.9

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC---CchHH
Q 036290          615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP---SPDCY  690 (796)
Q Consensus       615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p---~~~~~  690 (796)
                      +...|..+...+...|++++|...+++..+  ..| +...+..+...+...|++++|...+++..+.   .|   +...+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~   79 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQ--LDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV---IEDEYNKDVW   79 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---SCCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CcccchHHHH
Confidence            344555666667777777777777777766  334 4556666667777777777777777777632   33   35666


Q ss_pred             HHHHHHHHhc-CChHHHHHHHHhC
Q 036290          691 GCLVDMLSRN-GYLEDAKHVIEIM  713 (796)
Q Consensus       691 ~~l~~~~~~~-g~~~~A~~~~~~~  713 (796)
                      ..+..++.+. |++++|.+.+++.
T Consensus        80 ~~l~~~~~~~~~~~~~A~~~~~~~  103 (112)
T 2kck_A           80 AAKADALRYIEGKEVEAEIAEARA  103 (112)
T ss_dssp             HHHHHHHTTCSSCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHH
Confidence            6777777777 7777777777765

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.82  E-value=0.019  Score=57.14  Aligned_cols=171  Identities=8%  Similarity=-0.059  Sum_probs=94.8

Q ss_pred             HhcCCchHHHHHHHHHHhcCCcccHHH-HHHHHHHhcccC-cHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhc-C-Cc
Q 036290          424 CFNCCDADVLKTFCNIWESGVEVNGCT-FFYVVETCCRSE-NQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNF-G-QL  499 (796)
Q Consensus       424 ~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~  499 (796)
                      .+.+..++|++++.++..  +.|+..| |+.--..+...+ .++++.++++.+.... +-+..+++.-...+.+. + ++
T Consensus        65 ~~~e~se~AL~lt~~~L~--~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~  141 (349)
T 3q7a_A           65 AKEEKSERALELTEIIVR--MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP  141 (349)
T ss_dssp             HTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred             HhCCCCHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence            334445567777777666  3343322 333333333344 4666777776666554 44555566555555554 5 66


Q ss_pred             chHHHHHhcCCCC---CHhhHHHHHHHHHHcCChh--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc----
Q 036290          500 DNSFEFSNGAERL---DMASWGAMMSALVHQGHNH--------EAVTIFHSLVEAGEKPDEYILGTILNSCAAIGA----  564 (796)
Q Consensus       500 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~----  564 (796)
                      ++++++++.+.+.   +...|+--...+.+.+.++        ++++.++++.+.. .-|...|+.--..+.+.+.    
T Consensus       142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~  220 (349)
T 3q7a_A          142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS  220 (349)
T ss_dssp             HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence            7777777777653   4445554444444444444        7777777776653 3455556555555555543    


Q ss_pred             ---hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 036290          565 ---YQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGD  599 (796)
Q Consensus       565 ---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  599 (796)
                         ++++.+.++..+...+. |...|+.+-..+.+.|+
T Consensus       221 ~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          221 SRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence               45666666666665544 55555555555555443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.79  E-value=0.00012  Score=62.14  Aligned_cols=105  Identities=8%  Similarity=-0.038  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCC-CchHHHHHHHHHHhcCChHHHHHHHHhC-CC----CCC----HH
Q 036290          651 QATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQP-SPDCYGCLVDMLSRNGYLEDAKHVIEIM-PF----QPS----PT  720 (796)
Q Consensus       651 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~  720 (796)
                      ...+..+...+...|++++|...+++....   .| +...+..++.++...|++++|...+++. ..    .++    ..
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~   80 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL---DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK   80 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence            345777888899999999999999999844   34 4778889999999999999999999987 22    233    67


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEe
Q 036290          721 VYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLL  759 (796)
Q Consensus       721 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  759 (796)
                      +|..+..++...|++++|...++++++..| ++.....+
T Consensus        81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l  118 (131)
T 1elr_A           81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKC  118 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHH
Confidence            888899999999999999999999999998 45444333

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.79  E-value=0.00071  Score=71.55  Aligned_cols=22  Identities=27%  Similarity=0.457  Sum_probs=14.5

Q ss_pred             HHHHHcCChhHHHHHHHHHHHc
Q 036290          522 SALVHQGHNHEAVTIFHSLVEA  543 (796)
Q Consensus       522 ~~~~~~~~~~~A~~~~~~m~~~  543 (796)
                      ..+.+.|++++|++.|.++.+.
T Consensus        12 ~~l~~~~~y~eA~~~~~~~l~~   33 (434)
T 4b4t_Q           12 RRLVNEKQYNEAEQVYLSLLDK   33 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHS
T ss_pred             HHHHHCCCHHHHHHHHHHHHhh
Confidence            3455667777777777776654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.76  E-value=9.7e-05  Score=78.59  Aligned_cols=125  Identities=10%  Similarity=-0.003  Sum_probs=75.3

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCCHHHHHHHHHHhHhh
Q 036290          617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPS----------------QATFVSVMSACSHKGLVDKGCLLFKSMDSQ  680 (796)
Q Consensus       617 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~  680 (796)
                      ..|..+...+.+.|++++|...|++..+  +.|+                ...|..+..+|.+.|++++|+..++++.. 
T Consensus       269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-  345 (457)
T 1kt0_A          269 AIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG-  345 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-
Confidence            3455555666666666666666666665  3332                35566666677777777777777777763 


Q ss_pred             cCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHH-HHHHHHH
Q 036290          681 YGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS-PTVYRSLLSGCRIHGNKELGE-WASEKLL  746 (796)
Q Consensus       681 ~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~-~~~~~~~  746 (796)
                        +.|+ ...|..+..+|...|++++|...|+++ ...|+ ...+..+..++.+.|+.+++. ..+++++
T Consensus       346 --~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          346 --LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             --HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             --cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              3444 566667777777777777777777766 44553 345666666666666666554 3344444

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.71  E-value=8.5e-05  Score=79.39  Aligned_cols=113  Identities=15%  Similarity=0.115  Sum_probs=72.8

Q ss_pred             HHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHH
Q 036290          594 YAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKG  670 (796)
Q Consensus       594 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A  670 (796)
                      +.+.|++++|.+.+++.+..  .+...|..+..+|.+.|++++|++.+++..+  +.| +...+..+..+|...|++++|
T Consensus        16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~~eA   93 (477)
T 1wao_1           16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKFRAA   93 (477)
T ss_dssp             TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            44556666666666544432  3566777777777777888888888877777  455 556677777777788888888


Q ss_pred             HHHHHHhHhhcCCCCC-chHHHHHHHH--HHhcCChHHHHHHHH
Q 036290          671 CLLFKSMDSQYGMQPS-PDCYGCLVDM--LSRNGYLEDAKHVIE  711 (796)
Q Consensus       671 ~~~~~~~~~~~~~~p~-~~~~~~l~~~--~~~~g~~~~A~~~~~  711 (796)
                      .+.++++.+.   .|+ ...+..+..+  +.+.|++++|++.++
T Consensus        94 ~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           94 LRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            8888877733   444 4455555555  677788888888777

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.69  E-value=0.00022  Score=60.41  Aligned_cols=93  Identities=13%  Similarity=0.103  Sum_probs=63.7

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC----chHHHH
Q 036290          621 TLIMAYAHHGLVSEAMEIFDKMKLANLQPSQ----ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS----PDCYGC  692 (796)
Q Consensus       621 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~  692 (796)
                      .+...+...|++++|...|++..+  ..|+.    ..+..+..++...|++++|...++++...   .|+    +..+..
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~   81 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLE--LYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR---YPTHDKAAGGLLK   81 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH--HCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTSTTHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHH--HCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---CCCCcccHHHHHH
Confidence            445566777788888888887776  33433    35666667777788888888888877744   333    455667


Q ss_pred             HHHHHHhcCChHHHHHHHHhC-CCCCC
Q 036290          693 LVDMLSRNGYLEDAKHVIEIM-PFQPS  718 (796)
Q Consensus       693 l~~~~~~~g~~~~A~~~~~~~-~~~p~  718 (796)
                      +..++.+.|++++|.+.++++ ...|+
T Consensus        82 la~~~~~~g~~~~A~~~~~~~~~~~p~  108 (129)
T 2xev_A           82 LGLSQYGEGKNTEAQQTLQQVATQYPG  108 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            777888888888888888776 33344

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.66  E-value=7.1e-05  Score=76.03  Aligned_cols=107  Identities=9%  Similarity=-0.035  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCch------------------HHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          652 ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPD------------------CYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       652 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      ..+..+...+.+.|++++|...|++...   +.|+..                  +|..+..+|.+.|++++|++.+++.
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a  256 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA---YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV  256 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHH---HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH---HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3466677888999999999999999883   345532                  7889999999999999999999987


Q ss_pred             -CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290          714 -PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK  761 (796)
Q Consensus       714 -~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  761 (796)
                       ...| +...|..+..++...|++++|+..++++++++|+++.++..|..
T Consensus       257 l~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~  306 (338)
T 2if4_A          257 LTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRA  306 (338)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence             4445 56789999999999999999999999999999999999888866

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.65  E-value=0.00016  Score=63.97  Aligned_cols=128  Identities=17%  Similarity=0.085  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhccCCC----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCC-CHH
Q 036290          586 VASAVIDAYAKCGDIKGARMAFDQSFNS----ND----VIVYNTLIMAYAHHGLVSEAMEIFDKMKLAN----LQP-SQA  652 (796)
Q Consensus       586 ~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p-~~~  652 (796)
                      ++..+...|...|++++|...+++.+..    ++    ...+..+...+...|++++|.+.+++..+..    -.+ ...
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            3444455555555555555555433321    11    1356667777777888888887777765421    111 134


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhHhhc---CCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          653 TFVSVMSACSHKGLVDKGCLLFKSMDSQY---GMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       653 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      .+..+...+...|++++|...+++.....   +..+. ..++..+...+...|++++|.+.+++.
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  155 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  155 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            56667777888888888888888776331   11111 456777888888889999988888764

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.65  E-value=0.00013  Score=64.94  Aligned_cols=100  Identities=6%  Similarity=-0.015  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHC-------CC---------CC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhh
Q 036290          618 VYNTLIMAYAHHGLVSEAMEIFDKMKLA-------NL---------QP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQ  680 (796)
Q Consensus       618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~---------~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~  680 (796)
                      .+......+.+.|++++|+..|++..+.       .-         .| +...|..+..++.+.|++++|+..++++.  
T Consensus        13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al--   90 (162)
T 3rkv_A           13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL--   90 (162)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH--
Confidence            4455556666667777777666666552       00         22 23567777888888999999999998888  


Q ss_pred             cCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH
Q 036290          681 YGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPT  720 (796)
Q Consensus       681 ~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~  720 (796)
                       .+.|+ ...|..+..+|...|++++|.+.+++. ...|+..
T Consensus        91 -~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  131 (162)
T 3rkv_A           91 -KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA  131 (162)
T ss_dssp             -HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred             -hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence             34566 778888899999999999999988887 4566543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.62  E-value=0.00062  Score=74.07  Aligned_cols=157  Identities=8%  Similarity=-0.051  Sum_probs=123.7

Q ss_pred             CHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC
Q 036290          599 DIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGL----------VSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKG  665 (796)
Q Consensus       599 ~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g  665 (796)
                      ..++|++.+++.+..  .+...|+.--..+...|+          ++++++.++++.+  ..| +..+|..-...+.+.|
T Consensus        44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcc
Confidence            345667777555543  355667766666666666          8999999999998  567 7778888888888888


Q ss_pred             --CHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-------
Q 036290          666 --LVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNG-YLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIH-------  732 (796)
Q Consensus       666 --~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-------  732 (796)
                        +++++++.++++.+.   .|. ..+|+.-..++.+.| .++++++.++++ ...| |...|+.....+.+.       
T Consensus       122 ~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~  198 (567)
T 1dce_A          122 EPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG  198 (567)
T ss_dssp             SCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred             cccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence              779999999999944   555 777888888888888 899999999998 5555 667888887776653       


Q ss_pred             -------CChHHHHHHHHHHHccCCCCCcceEEec
Q 036290          733 -------GNKELGEWASEKLLLLLPKNDAAHVLLS  760 (796)
Q Consensus       733 -------g~~~~A~~~~~~~~~~~p~~~~~~~~l~  760 (796)
                             +.++++.+.++++++.+|++..+|..+.
T Consensus       199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~  233 (567)
T 1dce_A          199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHR  233 (567)
T ss_dssp             SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence                   5578999999999999999999998773

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.61  E-value=0.0014  Score=64.99  Aligned_cols=149  Identities=7%  Similarity=-0.028  Sum_probs=113.4

Q ss_pred             HHHHHHHHhccCCC--CChhHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCC-HHHHHHH
Q 036290          600 IKGARMAFDQSFNS--NDVIVYNTLIMAYAHHG--LVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGL-VDKGCLL  673 (796)
Q Consensus       600 ~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~-~~~A~~~  673 (796)
                      +++++.+++..+..  .+..+|+.-.-.+...|  .+++++.+++++.+  ..| |...|+.-...+...|. ++++++.
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~--~dprNy~AW~~R~~vl~~l~~~~~eel~~  167 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAF  167 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence            56677777555542  47788888777777877  48999999999999  567 77888887777778887 6999999


Q ss_pred             HHHhHhhcCCCCC-chHHHHHHHHHHhc--------------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----
Q 036290          674 FKSMDSQYGMQPS-PDCYGCLVDMLSRN--------------GYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIH----  732 (796)
Q Consensus       674 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----  732 (796)
                      ++.+...   .|+ ...|+....++.+.              +.++++++.+.+. ...| |...|+.+-..+.+.    
T Consensus       168 ~~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~  244 (331)
T 3dss_A          168 TDSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRC  244 (331)
T ss_dssp             HHHHHHH---CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGG
T ss_pred             HHHHHHH---CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcc
Confidence            9999944   454 66777666666554              4578888888887 3444 667887776666555    


Q ss_pred             -------CChHHHHHHHHHHHccCCCCC
Q 036290          733 -------GNKELGEWASEKLLLLLPKND  753 (796)
Q Consensus       733 -------g~~~~A~~~~~~~~~~~p~~~  753 (796)
                             +..+++++.++++++.+|++.
T Consensus       245 ~~~~~~~~~l~~el~~~~elle~~pd~~  272 (331)
T 3dss_A          245 ELSVEKSTVLQSELESCKELQELEPENK  272 (331)
T ss_dssp             GCCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             ccchHHHHHHHHHHHHHHHHHhhCcccc
Confidence                   457899999999999999873

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.60  E-value=0.00035  Score=60.41  Aligned_cols=94  Identities=9%  Similarity=-0.098  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHhccCCHHHHHHHHHHhHhh----
Q 036290          618 VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPS-------------QATFVSVMSACSHKGLVDKGCLLFKSMDSQ----  680 (796)
Q Consensus       618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------------~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~----  680 (796)
                      .+......+.+.|++++|+..|++..+  +.|+             ...|..+..++.+.|++++|+..+++....    
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            344566677888999999999998888  5555             227888888999999999999999988821    


Q ss_pred             cCCCCC-chHH----HHHHHHHHhcCChHHHHHHHHhC
Q 036290          681 YGMQPS-PDCY----GCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       681 ~~~~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      ..+.|+ ...|    .....++...|++++|++.|++.
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA  128 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV  128 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence            123888 7778    89999999999999999999987

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=97.58  E-value=0.00012  Score=73.87  Aligned_cols=237  Identities=10%  Similarity=0.001  Sum_probs=169.7

Q ss_pred             CCchhhHHHHHHHHccCChhHHHHHhcccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHh
Q 036290           77 NDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCV  156 (796)
Q Consensus        77 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~  156 (796)
                      -.+.+|+.|..+..+.|.+.+|.+.|-+  ..|...|..+|.+..+.|.+++-+..+.-.++..-  ++..=+.|+-+|+
T Consensus        52 n~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayA  127 (624)
T 3lvg_A           52 NEPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALA  127 (624)
T ss_dssp             CCCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHH
T ss_pred             CCccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence            4457899999999999999999887644  45666788999999999999999999887766533  3445568899999


Q ss_pred             ccCChhHHHHHHHHHHHhcCCCChhHhhHHHHHHHccCChhHHHHHhhccCC------------------------CCce
Q 036290          157 SMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISS------------------------DDVG  212 (796)
Q Consensus       157 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~~~  212 (796)
                      +.+++.+..+++       -.|+..-...+.+-+...|.++.|.-+|..+..                        .++.
T Consensus       128 k~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k  200 (624)
T 3lvg_A          128 KTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR  200 (624)
T ss_dssp             TSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred             hhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence            998876544443       135555556667777788888888888877652                        3678


Q ss_pred             eHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhccCCCchHHHHHHHHHHHhcC-CCChHHHHHHHHhh
Q 036290          213 CWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEV-ECSISIVNALIDMY  291 (796)
Q Consensus       213 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~  291 (796)
                      +|..+-.+|...+.+.-|.-+--.+.-     .......++..|-..|-+++...+++...  |. .....+++-|.-.|
T Consensus       201 tWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILY  273 (624)
T 3lvg_A          201 TWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILY  273 (624)
T ss_dssp             SHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHH
Confidence            999999999999998887766444432     22233456777888999999888888766  33 34667888888888


Q ss_pred             hcCCCHHHHHHHHhhcC----CC-------CcchHHHHHHHHHhCCCccHHH
Q 036290          292 IKSSGMDYAFKVFERMA----DK-------DVISWNTLFGGFSENKNPGQTA  332 (796)
Q Consensus       292 ~~~g~~~~A~~~~~~~~----~~-------~~~~~~~li~~~~~~~~~~~a~  332 (796)
                      +|-. .++..+-++...    -|       ....|.-++-.|+...+++.|.
T Consensus       274 sKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~  324 (624)
T 3lvg_A          274 SKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI  324 (624)
T ss_dssp             HSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred             HhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence            8763 333333333222    22       4566888888787777777654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.56  E-value=9.7e-05  Score=61.49  Aligned_cols=81  Identities=16%  Similarity=0.153  Sum_probs=35.5

Q ss_pred             CChHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHH
Q 036290          630 GLVSEAMEIFDKMKLANL-QP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDA  706 (796)
Q Consensus       630 g~~~~A~~~~~~m~~~g~-~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A  706 (796)
                      |++++|+..|++..+.+. .| +...+..+...+...|++++|+..|+++.+.   .|+ ...+..+..++.+.|++++|
T Consensus         4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ---FPNHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHcCCHHHH
Confidence            444445555555444211 12 2233444444455555555555555554422   233 44444455555555555555


Q ss_pred             HHHHHhC
Q 036290          707 KHVIEIM  713 (796)
Q Consensus       707 ~~~~~~~  713 (796)
                      .+.+++.
T Consensus        81 ~~~~~~a   87 (117)
T 3k9i_A           81 VELLLKI   87 (117)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5554444

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.54  E-value=0.0004  Score=73.80  Aligned_cols=93  Identities=13%  Similarity=0.055  Sum_probs=77.4

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHH
Q 036290          616 VIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCL  693 (796)
Q Consensus       616 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l  693 (796)
                      ...|..+..+|.+.|++++|+..+++..+  +.| +...|..+..+|...|++++|+..|+++.   .+.|+ ...+..+
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al---~l~P~~~~a~~~l  391 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALG--LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL---EVNPQNKAARLQI  391 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTC----CHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHH---HhCCCCHHHHHHH
Confidence            46788888999999999999999999998  556 67788888999999999999999999998   56776 7888889


Q ss_pred             HHHHHhcCChHHHH-HHHHhC
Q 036290          694 VDMLSRNGYLEDAK-HVIEIM  713 (796)
Q Consensus       694 ~~~~~~~g~~~~A~-~~~~~~  713 (796)
                      ..++.+.|+.++|. ..+.+|
T Consensus       392 ~~~~~~~~~~~~a~~~~~~~~  412 (457)
T 1kt0_A          392 SMCQKKAKEHNERDRRIYANM  412 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988876 455666

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.53  E-value=0.00012  Score=75.28  Aligned_cols=121  Identities=10%  Similarity=-0.018  Sum_probs=58.9

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHH
Q 036290          617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVD  695 (796)
Q Consensus       617 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~  695 (796)
                      ..+..+...+.+.|++++|++.|++..+.  .|+..          ....       .+...   ...|. ...|..+..
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~---~~~~~~~~~~~nla~  281 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGA---KLQPVALSCVLNIGA  281 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHG---GGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHH---HHHHHHHHHHHHHHH
Confidence            44666667777777777777777777651  11000          0000       00000   01122 344445555


Q ss_pred             HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEe
Q 036290          696 MLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLL  759 (796)
Q Consensus       696 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  759 (796)
                      +|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++..++..|
T Consensus       282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l  347 (370)
T 1ihg_A          282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL  347 (370)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            555555555555555544 3333 234455555555555555555555555555555555444443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.46  E-value=0.00061  Score=69.92  Aligned_cols=135  Identities=10%  Similarity=-0.039  Sum_probs=79.4

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHh
Q 036290          584 VYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACS  662 (796)
Q Consensus       584 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~  662 (796)
                      ...+..+...+.+.|++++|.+.|++.+..            +....    .....++..+  ..| +...|..+..+|.
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~------------~~~~~----~~~~~~~~~~--~~~~~~~~~~nla~~~~  284 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSR----AAAEDADGAK--LQPVALSCVLNIGACKL  284 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHH----HHSCHHHHGG--GHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH------------hhcCc----cccChHHHHH--HHHHHHHHHHHHHHHHH
Confidence            456778889999999999999999444320            00000    0000111111  223 3445666666667


Q ss_pred             ccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 036290          663 HKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGE  739 (796)
Q Consensus       663 ~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~  739 (796)
                      +.|++++|+..++++.   .+.|+ ...+..+..+|...|++++|.+.++++ ...| +...+..+..++...++.+++.
T Consensus       285 ~~g~~~~A~~~~~~al---~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~  361 (370)
T 1ihg_A          285 KMSDWQGAVDSCLEAL---EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE  361 (370)
T ss_dssp             HTTCHHHHHHHHHHHH---TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777666   34554 566666777777777777777777665 3344 3445555555555555555544

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.45  E-value=4.1e-05  Score=66.07  Aligned_cols=107  Identities=12%  Similarity=0.082  Sum_probs=59.9

Q ss_pred             HhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCH----------HHHHHHHHHhHhhcCCCCC-chHHHHHH
Q 036290          627 AHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLV----------DKGCLLFKSMDSQYGMQPS-PDCYGCLV  694 (796)
Q Consensus       627 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~----------~~A~~~~~~~~~~~~~~p~-~~~~~~l~  694 (796)
                      .+.+++++|.+.+++..+  ..| +...|..+..++...+++          ++|+..|++..   .+.|+ ...|..+.
T Consensus        13 ~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL---~ldP~~~~A~~~LG   87 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL---LIDPKKDEAVWCIG   87 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH---HHCTTCHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH---HhCcCcHHHHHHHH
Confidence            344556666666666665  344 445555555555555443          34445444444   33444 34444444


Q ss_pred             HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEe
Q 036290          695 DMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLL  759 (796)
Q Consensus       695 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  759 (796)
                      .+|...|.+            .|+..         ...|++++|++.|+++++++|++..+...|
T Consensus        88 ~ay~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~~y~~al  131 (158)
T 1zu2_A           88 NAYTSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNTHYLKSL  131 (158)
T ss_dssp             HHHHHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            444444332            22221         012689999999999999999987665444

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.39  E-value=0.0016  Score=68.82  Aligned_cols=158  Identities=8%  Similarity=-0.047  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHc-CCCCCHH---HHHHHH-HHHhccCchHHHHHHHHHHHHh----CCCC-chhH
Q 036290          517 WGAMMSALVHQGHNHEAVTIFHSLVEA-GEKPDEY---ILGTIL-NSCAAIGAYQRTKSIHPFVIKL----GFNT-EVYV  586 (796)
Q Consensus       517 ~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~---t~~~ll-~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~  586 (796)
                      +..+...|...|++++|.+.+...... +..++..   .....+ ..+...|+.+.+..++......    +..+ -..+
T Consensus        58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  137 (434)
T 4b4t_Q           58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL  137 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence            556777888888888888888776432 1112221   122222 2334567788888777765542    2222 2345


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhccCCC-------C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC--CC-CC-C--HH
Q 036290          587 ASAVIDAYAKCGDIKGARMAFDQSFNS-------N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLA--NL-QP-S--QA  652 (796)
Q Consensus       587 ~~~li~~~~~~g~~~~A~~~~~~~~~~-------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-~p-~--~~  652 (796)
                      +..+...|...|++++|..++++....       + ....+..++..|...|++++|..++++....  .+ .| .  ..
T Consensus       138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  217 (434)
T 4b4t_Q          138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE  217 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence            666777777777777777776433221       1 2345666666777777777777777665531  01 11 1  12


Q ss_pred             HHHHHHHHHhccCCHHHHHHHH
Q 036290          653 TFVSVMSACSHKGLVDKGCLLF  674 (796)
Q Consensus       653 t~~~ll~~~~~~g~~~~A~~~~  674 (796)
                      .+..+...+...|++++|...|
T Consensus       218 ~~~~~g~~~~~~~~y~~A~~~~  239 (434)
T 4b4t_Q          218 LDLMSGILHCEDKDYKTAFSYF  239 (434)
T ss_dssp             HHHHHHHHTTSSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHH
Confidence            3444445556666666666554

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.37  E-value=0.00015  Score=59.35  Aligned_cols=90  Identities=12%  Similarity=0.040  Sum_probs=50.4

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-------ch
Q 036290          617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-------PD  688 (796)
Q Consensus       617 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-------~~  688 (796)
                      ..|..+...+...|++++|.+.|++..+  ..| +...+..+..++...|++++|+..++++.   .+.|+       ..
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~~~   79 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLIT--AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL---RYTSTAEHVAIRSK   79 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TSCSSTTSHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCCCccHHHHHHH
Confidence            3455555666666666666666666666  344 44555566666666666666666666665   34444       23


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHH
Q 036290          689 CYGCLVDMLSRNGYLEDAKHVIE  711 (796)
Q Consensus       689 ~~~~l~~~~~~~g~~~~A~~~~~  711 (796)
                      .+..+..++...|+.++|.+.++
T Consensus        80 ~~~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           80 LQYRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHHHHHhHhhhHhHHH
Confidence            34444444555554444444433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.34  E-value=0.00037  Score=75.80  Aligned_cols=148  Identities=5%  Similarity=-0.068  Sum_probs=108.1

Q ss_pred             HHHHHHHHhccCCC--CChhHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC-CHHHHHHH
Q 036290          600 IKGARMAFDQSFNS--NDVIVYNTLIMAYAHHG--LVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKG-LVDKGCLL  673 (796)
Q Consensus       600 ~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g-~~~~A~~~  673 (796)
                      ++++++.++..+..  .+..+|+.-.-.+.+.|  +++++++.++++.+  ..| |...|+.-...+.+.| .++++++.
T Consensus        89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~--~d~~N~~aW~~R~~~l~~l~~~~~~el~~  166 (567)
T 1dce_A           89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAF  166 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHh--hccccccHHHHHHHHHHHcCCChHHHHHH
Confidence            66777777555543  36677777777777788  67999999999998  566 7777888777777888 88999999


Q ss_pred             HHHhHhhcCCCCC-chHHHHHHHHHHhc--------------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChH
Q 036290          674 FKSMDSQYGMQPS-PDCYGCLVDMLSRN--------------GYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKE  736 (796)
Q Consensus       674 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~  736 (796)
                      ++++.   ...|+ ...|.....++.+.              +.+++|++.++++ ...| |...|..+...+.+.++.+
T Consensus       167 ~~~~I---~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~  243 (567)
T 1dce_A          167 TDSLI---TRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHD  243 (567)
T ss_dssp             HHTTT---TTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCS
T ss_pred             HHHHH---HHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCcc
Confidence            98887   45665 66777766666653              5578888888777 4455 5678888888887777655


Q ss_pred             H------------HHHHHHHHHccCCCC
Q 036290          737 L------------GEWASEKLLLLLPKN  752 (796)
Q Consensus       737 ~------------A~~~~~~~~~~~p~~  752 (796)
                      +            |...|+++++++|..
T Consensus       244 ~~~~~~~~~~~~~~~~~f~~~i~~~~~~  271 (567)
T 1dce_A          244 VLCCVHVSREEACLSVCFSRPLTVGSRM  271 (567)
T ss_dssp             CEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred             ceeeeeeccCCceEEEEeccceeccccc
Confidence            4            444466666777765

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.34  E-value=0.00034  Score=74.16  Aligned_cols=122  Identities=11%  Similarity=-0.044  Sum_probs=75.0

Q ss_pred             hcCChHHHHHHHHHHHHCC---CC---C-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhh----cC-CCCC-chHHHHHH
Q 036290          628 HHGLVSEAMEIFDKMKLAN---LQ---P-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQ----YG-MQPS-PDCYGCLV  694 (796)
Q Consensus       628 ~~g~~~~A~~~~~~m~~~g---~~---p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~-~~p~-~~~~~~l~  694 (796)
                      ..|++++|+.++++..+..   +-   | ...+++.|..+|...|++++|..++++...-    +| -.|+ ..+++.|.
T Consensus       321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  400 (490)
T 3n71_A          321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG  400 (490)
T ss_dssp             TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            4455555555554443311   11   2 2245677777777777777777777766532    11 2233 56677788


Q ss_pred             HHHHhcCChHHHHHHHHhC------CCCCC---H-HHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 036290          695 DMLSRNGYLEDAKHVIEIM------PFQPS---P-TVYRSLLSGCRIHGNKELGEWASEKLLLLL  749 (796)
Q Consensus       695 ~~~~~~g~~~~A~~~~~~~------~~~p~---~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  749 (796)
                      .+|...|++++|..++++.      -+.||   . .+...+..++...|.+++|+.+++++.+..
T Consensus       401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888887776      12332   2 344555666777788888888888887643

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.29  E-value=0.00012  Score=59.98  Aligned_cols=89  Identities=12%  Similarity=0.089  Sum_probs=57.4

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-------HH
Q 036290          650 SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS-------PT  720 (796)
Q Consensus       650 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-------~~  720 (796)
                      +...+..+...+...|++++|+..|++..+.   .|+ ...+..+..++.+.|++++|++.+++. ...|+       ..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~   79 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA---QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK   79 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence            3445666667777778888888888777733   443 666777777777777887777777776 45554       34


Q ss_pred             HHHHHHHHHHhcCChHHHHHH
Q 036290          721 VYRSLLSGCRIHGNKELGEWA  741 (796)
Q Consensus       721 ~~~~l~~~~~~~g~~~~A~~~  741 (796)
                      .+..+..++...|+.+.|...
T Consensus        80 ~~~~~~~~~~~~~~~~~a~~~  100 (111)
T 2l6j_A           80 LQYRLELAQGAVGSVQIPVVE  100 (111)
T ss_dssp             HHHHHHHHHHHHHCCCCCSSS
T ss_pred             HHHHHHHHHHHHHhHhhhHhH
Confidence            455555555555555554443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.22  E-value=0.0045  Score=61.55  Aligned_cols=139  Identities=12%  Similarity=-0.001  Sum_probs=94.5

Q ss_pred             CChhHHHHHHHHHH--hcC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhc---cC-----CHHHHHHHHHHhHh
Q 036290          614 NDVIVYNTLIMAYA--HHG---LVSEAMEIFDKMKLANLQPSQ-ATFVSVMSACSH---KG-----LVDKGCLLFKSMDS  679 (796)
Q Consensus       614 ~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~---~g-----~~~~A~~~~~~~~~  679 (796)
                      .+...|...+++..  ..+   ...+|..+|++..+  ..|+. ..|..+..++..   .+     ........++....
T Consensus       192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a  269 (372)
T 3ly7_A          192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT  269 (372)
T ss_dssp             SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence            36667777766543  333   35789999999998  77853 445444444421   11     11111122222111


Q ss_pred             hcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc
Q 036290          680 QYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDA  754 (796)
Q Consensus       680 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  754 (796)
                      ......++.+|..+...+...|++++|...++++ ...|+...|..+...+.-.|++++|.+.+++++.++|..++
T Consensus       270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            1122444888888888888889999999999998 45688878878888899999999999999999999997754

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.15  E-value=0.00027  Score=60.92  Aligned_cols=96  Identities=15%  Similarity=0.135  Sum_probs=74.3

Q ss_pred             HHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCCh----------HHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 036290          594 YAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLV----------SEAMEIFDKMKLANLQP-SQATFVSVMSA  660 (796)
Q Consensus       594 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~g~~p-~~~t~~~ll~~  660 (796)
                      ..+.+.+++|.+.++..+..  .+...|..+..++...+++          ++|+..|++..+  +.| +...|..+..+
T Consensus        12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~a   89 (158)
T 1zu2_A           12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNA   89 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHH
Confidence            34567789999999776653  4888999899999988775          599999999999  778 56789999999


Q ss_pred             HhccC-----------CHHHHHHHHHHhHhhcCCCCCchHHHHHH
Q 036290          661 CSHKG-----------LVDKGCLLFKSMDSQYGMQPSPDCYGCLV  694 (796)
Q Consensus       661 ~~~~g-----------~~~~A~~~~~~~~~~~~~~p~~~~~~~l~  694 (796)
                      |...|           ++++|++.|+++.   .+.|+-..|..-+
T Consensus        90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl---~l~P~~~~y~~al  131 (158)
T 1zu2_A           90 YTSFAFLTPDETEAKHNFDLATQFFQQAV---DEQPDNTHYLKSL  131 (158)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHH---HHCTTCHHHHHHH
T ss_pred             HHHhcccCcchhhhhccHHHHHHHHHHHH---HhCCCCHHHHHHH
Confidence            98775           7888888888877   4577755554333

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.13  E-value=0.0012  Score=54.53  Aligned_cols=75  Identities=12%  Similarity=0.064  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHH
Q 036290          634 EAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIE  711 (796)
Q Consensus       634 ~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~  711 (796)
                      .|+..|++..+  ..| +...+..+...+...|++++|+..|++....   .|+ ...|..+..+|...|++++|.+.++
T Consensus         3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~   77 (115)
T 2kat_A            3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF---DPTYSVAWKWLGKTLQGQGDRAGARQAWE   77 (115)
T ss_dssp             CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            34555555555  334 4445555556666666666666666666522   333 4455556666666666666666655


Q ss_pred             hC
Q 036290          712 IM  713 (796)
Q Consensus       712 ~~  713 (796)
                      +.
T Consensus        78 ~a   79 (115)
T 2kat_A           78 SG   79 (115)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=97.12  E-value=0.00029  Score=71.08  Aligned_cols=433  Identities=9%  Similarity=0.021  Sum_probs=239.7

Q ss_pred             ChhHhhHHHHHHHccCChhHHHHHhhccCCCCceeHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHhhHHHHHHhhcc
Q 036290          179 NPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVVSSMLFEGITMDKYTFINALQGCSL  258 (796)
Q Consensus       179 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~  258 (796)
                      .+.+|+.|..++.+.|.+.+|++-|  +...|...|..+|.+..+.|.+++-+.++...++..-.|  ..=+.|+-++++
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk  128 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK  128 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred             CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence            4567777777777777777766544  334567778888888888888888888887776553333  333467788888


Q ss_pred             CCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCC------------------------CCcch
Q 036290          259 VADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMAD------------------------KDVIS  314 (796)
Q Consensus       259 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~  314 (796)
                      .++..+.++++.       .|+..-...+-+-|...|.++.|.-+|..+..                        .++.+
T Consensus       129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt  201 (624)
T 3lvg_A          129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT  201 (624)
T ss_dssp             SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred             hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence            887776555543       34444445555666666777777666666542                        37789


Q ss_pred             HHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 036290          315 WNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCR  394 (796)
Q Consensus       315 ~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~  394 (796)
                      |..+-.+|...+.+.-|.-.--.+.     ........++..|-..|.+++-..+++.-... -.....+++-|.-.|++
T Consensus       202 WKeV~~ACvd~~EfrLAqicGLniI-----vhadeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsK  275 (624)
T 3lvg_A          202 WKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSK  275 (624)
T ss_dssp             HHHHTHHHHHSCTTTTTTHHHHHHH-----CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhCchHHHHHHHhcchhc-----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHh
Confidence            9999999999999887755433332     22334456677788889998888887765521 13467788888888887


Q ss_pred             cCChHHHHHHHHhCCC----C-------ChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCc
Q 036290          395 CGAVEMAHSVFDNVSY----K-------NITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSEN  463 (796)
Q Consensus       395 ~g~~~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~  463 (796)
                      - +.++..+-++..-.    |       ....|.-++-.|.+..+++.|....   .+.  .|+...-..+.....+..+
T Consensus       276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltM---i~h--~~~Aw~h~~Fkdii~KVaN  349 (624)
T 3lvg_A          276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVAN  349 (624)
T ss_dssp             S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTT---TSC--HHHHCCGGGGTTTGGGCSC
T ss_pred             c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHH---HhC--ChhhccHHHHHHHHHHcch
Confidence            5 44555554443322    2       3346888888888888888765432   110  1111111111222222222


Q ss_pred             HHHHHHHHHHHHHhCCCCCchhHhHHHHHHH-------------hcCCcchHHHHHhcCCCCCHhh-HHHHHHHHHHcCC
Q 036290          464 QQMVGQIHGAIIKTGFSSCGYICSSLIKSYV-------------NFGQLDNSFEFSNGAERLDMAS-WGAMMSALVHQGH  529 (796)
Q Consensus       464 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~g~~~~A~~~~~~~~~~~~~~-~~~li~~~~~~~~  529 (796)
                      .+.-.+.....+    .-.+...+-|+..+.             +.|++.-....+...+..|... -.++-..|....+
T Consensus       350 ~EiyYKAi~FYL----~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEED  425 (624)
T 3lvg_A          350 VELYYRAIQFYL----EFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEED  425 (624)
T ss_dssp             SHHHHHHHHHHT----TSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHH----HhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhh
Confidence            222222222211    222333344444443             4444444444444444433333 2334444555555


Q ss_pred             hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 036290          530 NHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQ  609 (796)
Q Consensus       530 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  609 (796)
                      ++.-                   ..-|.+|-.-.....|.++    .++   .-...-..-...|-+.++++++..+.++
T Consensus       426 y~~L-------------------R~SId~ydNFD~i~LA~rL----EkH---eL~eFRrIAA~LYkkn~rw~qsi~l~Kk  479 (624)
T 3lvg_A          426 YQAL-------------------RTSIDAYDNFDNISLAQRL----EKH---ELIEFRRIAAYLFKGNNRWKQSVELCKK  479 (624)
T ss_dssp             CHHH-------------------HHTTSSCCCSCTTHHHHHH----HTC---SSHHHHHHHHHHHHTTCHHHHHSSCSST
T ss_pred             HHHH-------------------HHHHHHhccccHHHHHHHH----hhC---chHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence            4321                   1111222222222222222    111   1122222334556777788877765521


Q ss_pred             cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 036290          610 SFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLL  673 (796)
Q Consensus       610 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~  673 (796)
                      .-      .|.-.|...+..|+.+-|.++++-..+.|   +...|...+..|...=+.+-++++
T Consensus       480 Dk------lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl  534 (624)
T 3lvg_A          480 DS------LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET  534 (624)
T ss_dssp             TC------CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred             cc------cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence            11      12222333455677777777777777644   445677777777666666666654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.08  E-value=0.0056  Score=52.32  Aligned_cols=112  Identities=13%  Similarity=-0.108  Sum_probs=88.5

Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHh----cCChHH
Q 036290          630 GLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSR----NGYLED  705 (796)
Q Consensus       630 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~  705 (796)
                      +++++|.+.|++..+.| .|+..    |-..|...+.+++|.++|++..+.    -++..+..|..+|..    .+++++
T Consensus         9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~   79 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK   79 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence            46788999999998877 33433    666677777888899999988744    356777888888887    789999


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCC
Q 036290          706 AKHVIEIMPFQPSPTVYRSLLSGCRI----HGNKELGEWASEKLLLLLP  750 (796)
Q Consensus       706 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p  750 (796)
                      |.+++++.-...++..+..|...|..    .+|.++|...++++.+...
T Consensus        80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            99999988434577788888888887    7899999999999988743

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.04  E-value=0.00094  Score=55.07  Aligned_cols=64  Identities=14%  Similarity=0.027  Sum_probs=30.4

Q ss_pred             chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 036290          687 PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLP  750 (796)
Q Consensus       687 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  750 (796)
                      ...+..+..+|...|++++|.+.+++. ...| +...|..+..++...|++++|...+++++++.|
T Consensus        19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~   84 (115)
T 2kat_A           19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ   84 (115)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            444444555555555555555555444 2222 233444444445555555555555555554444

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.02  E-value=0.00069  Score=52.85  Aligned_cols=71  Identities=17%  Similarity=0.170  Sum_probs=42.0

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEE
Q 036290          688 DCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVL  758 (796)
Q Consensus       688 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  758 (796)
                      ..+..+...+...|++++|.+.+++. ...| +...|..+..++...|++++|...++++++.+|+++.++..
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~   82 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN   82 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            44555555666666666666666555 2222 34556666666666666666666666666666666555443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.95  E-value=0.0032  Score=48.88  Aligned_cols=78  Identities=19%  Similarity=0.253  Sum_probs=41.8

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHH
Q 036290          617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLV  694 (796)
Q Consensus       617 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~  694 (796)
                      ..+..+...+...|++++|...+++..+  ..| +...+..+...+...|++++|...+++....   .|+ ...+..+.
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~l~   84 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAKQNLG   84 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCHHHHHHHH
Confidence            3445555555666666666666666655  233 3445555555666666666666666665522   333 44444444


Q ss_pred             HHHHh
Q 036290          695 DMLSR  699 (796)
Q Consensus       695 ~~~~~  699 (796)
                      .++.+
T Consensus        85 ~~~~~   89 (91)
T 1na3_A           85 NAKQK   89 (91)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            44433

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.90  E-value=0.017  Score=49.25  Aligned_cols=82  Identities=10%  Similarity=-0.099  Sum_probs=37.3

Q ss_pred             HHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cC
Q 036290          594 YAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAH----HGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSH----KG  665 (796)
Q Consensus       594 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g  665 (796)
                      |...+..++|.+.|++.....+...+..|...|..    .+++++|.++|++..+.|   +...+..|...|..    .+
T Consensus        35 y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~  111 (138)
T 1klx_A           35 SNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVK  111 (138)
T ss_dssp             TCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred             HHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCc
Confidence            33333444444444333334444444444444444    445555555555554432   23333344444443    44


Q ss_pred             CHHHHHHHHHHhH
Q 036290          666 LVDKGCLLFKSMD  678 (796)
Q Consensus       666 ~~~~A~~~~~~~~  678 (796)
                      ++++|..+|++..
T Consensus       112 d~~~A~~~~~~Aa  124 (138)
T 1klx_A          112 NEKQAVKTFEKAC  124 (138)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            5555555555544

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.88  E-value=0.0028  Score=50.57  Aligned_cols=62  Identities=15%  Similarity=0.134  Sum_probs=35.3

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 036290          615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMD  678 (796)
Q Consensus       615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~  678 (796)
                      +...+..+...|...|++++|+..|++..+  ..| +...|..+..+|...|++++|...+++..
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            444555555556666666666666666655  334 34445555556666666666666665554

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=96.87  E-value=0.0045  Score=65.57  Aligned_cols=63  Identities=10%  Similarity=0.048  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCC-CC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhh
Q 036290          618 VYNTLIMAYAHHGLVSEAMEIFDKMKL-----ANLQ-PS-QATFVSVMSACSHKGLVDKGCLLFKSMDSQ  680 (796)
Q Consensus       618 ~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~  680 (796)
                      +++.|...|...|++++|+.++++..+     .|-. |+ ..+...+-.++...+.+++|..+++.+.+.
T Consensus       395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555554432     2222 32 233455556777788888888888887654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.85  E-value=0.002  Score=51.53  Aligned_cols=61  Identities=15%  Similarity=0.115  Sum_probs=45.8

Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          650 SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       650 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      +...+..+...+...|++++|+..|+++.+   ..|+ ...|..+..+|...|++++|.+.+++.
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   67 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVE---TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG   67 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            555677777778888888888888888773   3455 667777888888888888888877765

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.72  E-value=0.0019  Score=55.02  Aligned_cols=103  Identities=19%  Similarity=0.035  Sum_probs=71.9

Q ss_pred             CHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChHHH
Q 036290          666 LVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNG---YLEDAKHVIEIM-PFQ-P--SPTVYRSLLSGCRIHGNKELG  738 (796)
Q Consensus       666 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~A  738 (796)
                      ....+.+.|.+.... + .++..+...+..++++.+   +.++++.++++. ... |  +...+..|.-++.+.|++++|
T Consensus        13 ~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A   90 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA   90 (152)
T ss_dssp             HHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence            344555555555432 2 256777777788888877   555788777776 222 4  245667777788999999999


Q ss_pred             HHHHHHHHccCCCCCcceEEecC-hhhHHhCCC
Q 036290          739 EWASEKLLLLLPKNDAAHVLLSK-RKRQREGNL  770 (796)
Q Consensus       739 ~~~~~~~~~~~p~~~~~~~~l~~-~~~~~~~~~  770 (796)
                      ++.++.+++.+|++..+..+... .+.+...|+
T Consensus        91 ~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~kdgl  123 (152)
T 1pc2_A           91 LKYVRGLLQTEPQNNQAKELERLIDKAMKKDGL  123 (152)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhH
Confidence            99999999999998888776655 555666665

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.55  E-value=0.0057  Score=63.55  Aligned_cols=91  Identities=11%  Similarity=-0.101  Sum_probs=55.8

Q ss_pred             cCCHHHHHHHHHHhHhhc--CCCCC----chHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCCH-HHHHHHHH
Q 036290          664 KGLVDKGCLLFKSMDSQY--GMQPS----PDCYGCLVDMLSRNGYLEDAKHVIEIM---------PFQPSP-TVYRSLLS  727 (796)
Q Consensus       664 ~g~~~~A~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~~  727 (796)
                      .|++++|+.++++.....  -+.|+    ..+++.|..+|...|++++|..++++.         +..|+. .+++.|..
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            456666666666554321  12222    455666777777777777777777665         122333 45777777


Q ss_pred             HHHhcCChHHHHHHHHHHHc-----cCCCCCc
Q 036290          728 GCRIHGNKELGEWASEKLLL-----LLPKNDA  754 (796)
Q Consensus       728 ~~~~~g~~~~A~~~~~~~~~-----~~p~~~~  754 (796)
                      .|..+|++++|+.+++++++     +.|++|.
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~  422 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPY  422 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred             HHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence            77777777777777777775     3455544

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.55  E-value=0.0036  Score=49.68  Aligned_cols=84  Identities=10%  Similarity=0.035  Sum_probs=43.2

Q ss_pred             HHHhccCCHHHHHHHHHHhHhhcCCCCC-ch-HHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCC
Q 036290          659 SACSHKGLVDKGCLLFKSMDSQYGMQPS-PD-CYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP-TVYRSLLSGCRIHGN  734 (796)
Q Consensus       659 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~  734 (796)
                      ..+...|++++|...++++.+.   .|+ .. .+..+..+|...|++++|.+.+++. ...|+. ..+..        +.
T Consensus         8 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~   76 (99)
T 2kc7_A            8 KELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM   76 (99)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence            3455566666666666666522   343 34 5555666666666666666666555 233322 22211        34


Q ss_pred             hHHHHHHHHHHHccCCCCC
Q 036290          735 KELGEWASEKLLLLLPKND  753 (796)
Q Consensus       735 ~~~A~~~~~~~~~~~p~~~  753 (796)
                      ..++...++++.+.+|+++
T Consensus        77 ~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           77 VMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHHHHHHCCTTHHHHCCS
T ss_pred             HHHHHHHHHHHhccCcccc
Confidence            4455555555555555444

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.51  E-value=0.00088  Score=53.41  Aligned_cols=53  Identities=13%  Similarity=0.188  Sum_probs=26.7

Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCC-CHH-HHHHHHHHHhccCCHHHHHHHHHHhH
Q 036290          624 MAYAHHGLVSEAMEIFDKMKLANLQP-SQA-TFVSVMSACSHKGLVDKGCLLFKSMD  678 (796)
Q Consensus       624 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~-t~~~ll~~~~~~g~~~~A~~~~~~~~  678 (796)
                      ..+...|++++|.+.+++..+  ..| +.. .+..+..++...|++++|...|++..
T Consensus         8 ~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al   62 (99)
T 2kc7_A            8 KELINQGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI   62 (99)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHH--HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            344455555555555555555  233 233 44444455555555555555555554

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.50  E-value=0.0062  Score=63.45  Aligned_cols=60  Identities=13%  Similarity=-0.045  Sum_probs=29.9

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 036290          688 DCYGCLVDMLSRNGYLEDAKHVIEIM---------PFQPSP-TVYRSLLSGCRIHGNKELGEWASEKLLL  747 (796)
Q Consensus       688 ~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~  747 (796)
                      .+++.|+.+|...|++++|..++++.         +..|+. .+++.|...|...|++++|+.+++++++
T Consensus       330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            34445555555555555555555444         112222 3455555555555555555555555554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.34  E-value=0.0091  Score=47.93  Aligned_cols=69  Identities=16%  Similarity=0.047  Sum_probs=49.9

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcce
Q 036290          688 DCYGCLVDMLSRNGYLEDAKHVIEIM-----P----FQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAH  756 (796)
Q Consensus       688 ~~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  756 (796)
                      .....|+..+.+.|++..|..+++..     .    -.+...++..|..++.+.|+++.|...++++++++|+++.+.
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            34445677777777777777777665     1    112346778888888888888888888888888888887663

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.09  E-value=0.018  Score=44.88  Aligned_cols=66  Identities=9%  Similarity=-0.070  Sum_probs=43.1

Q ss_pred             CchHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 036290          686 SPDCYGCLVDMLSRNGY---LEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPK  751 (796)
Q Consensus       686 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  751 (796)
                      ++..+..+..++...++   .++|..++++. ...| +...+..+...+.+.|++++|+..++++++.+|+
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            35566666666654443   57777777766 4444 3456666666677777777777777777777776

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.06  E-value=0.26  Score=56.57  Aligned_cols=114  Identities=18%  Similarity=0.177  Sum_probs=71.9

Q ss_pred             HHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHH
Q 036290          492 SYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSI  571 (796)
Q Consensus       492 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~  571 (796)
                      .....|+++.|.++.+.+.  +...|..+...+.+.++++.|.+.|.++.+         |..+...+...++.+...++
T Consensus       661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~  729 (814)
T 3mkq_A          661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL  729 (814)
T ss_dssp             HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred             hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence            3455677777777776663  456788888888888888888888887642         23344444446666655555


Q ss_pred             HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 036290          572 HPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDK  641 (796)
Q Consensus       572 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  641 (796)
                      .+.....|-      ++....+|.+.|++++|.+++                   .+.+++++|..+-+.
T Consensus       730 ~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~-------------------~~~~~~~~A~~lA~~  774 (814)
T 3mkq_A          730 AKDAETTGK------FNLAFNAYWIAGDIQGAKDLL-------------------IKSQRFSEAAFLGST  774 (814)
T ss_dssp             HHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH-------------------HHTTCHHHHHHHHHH
T ss_pred             HHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH-------------------HHcCChHHHHHHHHH
Confidence            444444331      233344556667777777666                   566777777776554

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.89  E-value=0.021  Score=46.57  Aligned_cols=92  Identities=22%  Similarity=0.046  Sum_probs=60.7

Q ss_pred             CHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChHHH
Q 036290          666 LVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLED---AKHVIEIM-PFQ-P--SPTVYRSLLSGCRIHGNKELG  738 (796)
Q Consensus       666 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~A  738 (796)
                      .+..+.+-|...... +. |+..+-..+..++.+..+..+   ++.++++. ... |  .......|.-++.+.|+++.|
T Consensus        16 ~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A   93 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence            344455555544433 22 666666677777777776555   77777766 222 3  123445667778888999999


Q ss_pred             HHHHHHHHccCCCCCcceEEe
Q 036290          739 EWASEKLLLLLPKNDAAHVLL  759 (796)
Q Consensus       739 ~~~~~~~~~~~p~~~~~~~~l  759 (796)
                      ++.++.+++.+|+|..+..+.
T Consensus        94 ~~~~~~lL~~eP~n~QA~~Lk  114 (126)
T 1nzn_A           94 LKYVRGLLQTEPQNNQAKELE  114 (126)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHH
Confidence            999999999999887765544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.88  E-value=0.14  Score=58.77  Aligned_cols=102  Identities=17%  Similarity=0.081  Sum_probs=53.8

Q ss_pred             HHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 036290          593 AYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCL  672 (796)
Q Consensus       593 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~  672 (796)
                      .....|++++|.++. +.+  .+...|..+...+.+.|+++.|.+.|.++.+         |..+...+...|+.+...+
T Consensus       661 ~~l~~~~~~~A~~~~-~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~  728 (814)
T 3mkq_A          661 LALKVGQLTLARDLL-TDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT  728 (814)
T ss_dssp             HHHHHTCHHHHHHHH-TTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred             hhhhcCCHHHHHHHH-Hhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence            345567777777766 333  3556777777777777777777777776643         2233333333444444444


Q ss_pred             HHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          673 LFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       673 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      +.+..... |      -++.-..+|.+.|++++|++++.++
T Consensus       729 ~~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          729 LAKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence            43333321 1      1222333444455555555555554

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.56  E-value=0.79  Score=40.01  Aligned_cols=130  Identities=16%  Similarity=0.139  Sum_probs=91.8

Q ss_pred             HHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 036290          591 IDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKG  670 (796)
Q Consensus       591 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A  670 (796)
                      .+.....|+++.|.++.++ +  .+...|..|.......|+++-|.+.|.+..+         +..+.--|...|+.+.-
T Consensus        12 F~LAL~lg~l~~A~e~a~~-l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L   79 (177)
T 3mkq_B           12 FDLALEYGNLDAALDEAKK-L--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL   79 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHH-H--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHH-h--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence            4455678899999888733 2  5678899999999999999999999988764         44444455667777776


Q ss_pred             HHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 036290          671 CLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKL  745 (796)
Q Consensus       671 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  745 (796)
                      .++-+....+ |      -++.-...+.-.|+++++.+++.+.+..|...      ......|..+.|.++.+.+
T Consensus        80 ~kla~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           80 SKMQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence            6665554433 2      24555666777899999999999886444321      2233467888888887765

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=95.47  E-value=0.02  Score=59.49  Aligned_cols=85  Identities=9%  Similarity=-0.011  Sum_probs=59.9

Q ss_pred             cCChHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHhHhh----cC-CCCC-chHHHHHHH
Q 036290          629 HGLVSEAMEIFDKMKLA---NLQP----SQATFVSVMSACSHKGLVDKGCLLFKSMDSQ----YG-MQPS-PDCYGCLVD  695 (796)
Q Consensus       629 ~g~~~~A~~~~~~m~~~---g~~p----~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~-~~p~-~~~~~~l~~  695 (796)
                      .|++++|+.++++..+.   -+-|    ...+++.|..+|...|++++|+.+++++..-    +| -.|+ ..+++.|..
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            34556666666555431   1122    2356788888888899999998888887632    12 2334 677889999


Q ss_pred             HHHhcCChHHHHHHHHhC
Q 036290          696 MLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       696 ~~~~~g~~~~A~~~~~~~  713 (796)
                      +|...|++++|..++++.
T Consensus       391 ~~~~qg~~~eA~~~~~~A  408 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKA  408 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHH
Confidence            999999999999999886

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=95.46  E-value=0.15  Score=50.68  Aligned_cols=62  Identities=13%  Similarity=0.087  Sum_probs=27.5

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 036290          615 DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMD  678 (796)
Q Consensus       615 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~  678 (796)
                      +...|..+...+...|++++|...+++....  .|+...|..+...+.-.|++++|.+.++++.
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Al  337 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAF  337 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3344444443344444444444444444442  2444444334444444444444444444444

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=95.20  E-value=0.074  Score=55.29  Aligned_cols=89  Identities=13%  Similarity=0.174  Sum_probs=55.8

Q ss_pred             HHHhcCChHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHhh----c-CCCCC-chHHH
Q 036290          625 AYAHHGLVSEAMEIFDKMKLAN---LQPS----QATFVSVMSACSHKGLVDKGCLLFKSMDSQ----Y-GMQPS-PDCYG  691 (796)
Q Consensus       625 ~~~~~g~~~~A~~~~~~m~~~g---~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~----~-~~~p~-~~~~~  691 (796)
                      .+.+.|++++|+.++++..+..   +.|+    ..+++.+..+|...|++++|+.+++++..-    + .-.|+ ..+++
T Consensus       296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~  375 (429)
T 3qwp_A          296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM  375 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence            3445666777777766665421   1121    234666777777777777777777766532    1 12223 45677


Q ss_pred             HHHHHHHhcCChHHHHHHHHhC
Q 036290          692 CLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       692 ~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      .|...|...|++++|..++++.
T Consensus       376 nLa~~~~~~g~~~eA~~~~~~A  397 (429)
T 3qwp_A          376 KVGKLQLHQGMFPQAMKNLRLA  397 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHH
Confidence            7778888888888888877765

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.19  E-value=0.18  Score=39.09  Aligned_cols=62  Identities=6%  Similarity=-0.039  Sum_probs=38.5

Q ss_pred             ChhHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 036290          615 DVIVYNTLIMAYAHHGL---VSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMD  678 (796)
Q Consensus       615 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~  678 (796)
                      +...+..+..++...++   .++|..++++..+  ..| +......+...+...|++++|+..|+++.
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l   70 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLL   70 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44555555555543333   5677777777776  556 44455555566677777777777777776

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=94.51  E-value=0.22  Score=42.32  Aligned_cols=86  Identities=17%  Similarity=0.093  Sum_probs=66.0

Q ss_pred             hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHhHhhcCCCC--CchHHHHHHHHHHhcCChHHH
Q 036290          632 VSEAMEIFDKMKLANLQPSQATFVSVMSACSHKG---LVDKGCLLFKSMDSQYGMQP--SPDCYGCLVDMLSRNGYLEDA  706 (796)
Q Consensus       632 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A  706 (796)
                      ...+.+-|.+..+.|. ++..+...+..++++.+   +.++++.++++..+. . .|  ...++..|.-++.+.|++++|
T Consensus        14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A   90 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA   90 (152)
T ss_dssp             HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHH
Confidence            3455666776666554 67777777888888888   677999999999865 2 35  367777888899999999999


Q ss_pred             HHHHHhC-CCCCCHH
Q 036290          707 KHVIEIM-PFQPSPT  720 (796)
Q Consensus       707 ~~~~~~~-~~~p~~~  720 (796)
                      .+.++.+ ...|+..
T Consensus        91 ~~y~~~lL~ieP~n~  105 (152)
T 1pc2_A           91 LKYVRGLLQTEPQNN  105 (152)
T ss_dssp             HHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHhcCCCCH
Confidence            9999988 6677643

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=93.86  E-value=8.7  Score=41.58  Aligned_cols=122  Identities=10%  Similarity=-0.042  Sum_probs=79.1

Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHH
Q 036290          630 GLVSEAMEIFDKMKLANLQPSQAT----FVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLED  705 (796)
Q Consensus       630 g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  705 (796)
                      .+.+.|...+....+.+ ..+...    ...+.......+...++...+......   .++.....-.+....+.|+++.
T Consensus       228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~  303 (618)
T 1qsa_A          228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG  303 (618)
T ss_dssp             HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred             cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence            37899999998887543 223322    233334445556355666666654422   3443334445555668899999


Q ss_pred             HHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEe
Q 036290          706 AKHVIEIMPFQP--SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLL  759 (796)
Q Consensus       706 A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  759 (796)
                      |...|+.|+..+  ...-..-+..++...|+.++|..+++.+.+  +  .+.|-.|
T Consensus       304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~l  355 (618)
T 1qsa_A          304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--Q--RGFYPMV  355 (618)
T ss_dssp             HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHH
T ss_pred             HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CChHHHH
Confidence            999999996443  334445667778889999999999999975  3  2456566

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=93.50  E-value=0.32  Score=40.69  Aligned_cols=52  Identities=13%  Similarity=-0.100  Sum_probs=31.8

Q ss_pred             CChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCC
Q 036290          701 GYLEDAKHVIEIM---PFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKND  753 (796)
Q Consensus       701 g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  753 (796)
                      ++.++|.++|+.+   ..+- ..+|-....--.++|+...|++++.+++...|...
T Consensus        74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~  128 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL  128 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred             cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence            5666666666655   1111 45565555556677777777777777777666543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=93.15  E-value=0.39  Score=39.84  Aligned_cols=87  Identities=11%  Similarity=0.043  Sum_probs=61.5

Q ss_pred             CCCchHHHHHHHHHHhcCChH---HHHHHHHhC-CCCC-CH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceE
Q 036290          684 QPSPDCYGCLVDMLSRNGYLE---DAKHVIEIM-PFQP-SP-TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHV  757 (796)
Q Consensus       684 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p-~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  757 (796)
                      .|+..+-..+..++.+..+.+   +++.++++. ...| +. .-...|.-++.+.|++++|++..+.+++.+|+|..+..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            566777777788888877544   566677666 2233 23 34456777788999999999999999999999888765


Q ss_pred             EecC-hhhHHhCCC
Q 036290          758 LLSK-RKRQREGNL  770 (796)
Q Consensus       758 ~l~~-~~~~~~~~~  770 (796)
                      +..- .+.|...|+
T Consensus       116 Lk~~Ie~~i~kdGl  129 (144)
T 1y8m_A          116 LKSMVEDKIQKETL  129 (144)
T ss_dssp             HHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHhch
Confidence            5544 555655665

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=92.75  E-value=0.12  Score=49.19  Aligned_cols=77  Identities=17%  Similarity=0.175  Sum_probs=47.4

Q ss_pred             hHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhc-----cCCHHHHHHHHHHhHhhcCCCCC--chHHHHHHHHHHhc-
Q 036290          632 VSEAMEIFDKMKLANLQPS---QATFVSVMSACSH-----KGLVDKGCLLFKSMDSQYGMQPS--PDCYGCLVDMLSRN-  700 (796)
Q Consensus       632 ~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~-----~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~-  700 (796)
                      ...|...+++..+  +.|+   ...|..+...|..     -|+.++|.+.|++..   .+.|+  ..++....+.+++. 
T Consensus       179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL---~LnP~~~id~~v~YA~~l~~~~  253 (301)
T 3u64_A          179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLT---RYCSAHDPDHHITYADALCIPL  253 (301)
T ss_dssp             HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHH---HHCCTTCSHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHH---HhCCCCCchHHHHHHHHHHHhc
Confidence            3456666666666  5565   3456666666655     367777777777666   34552  55666666666663 


Q ss_pred             CChHHHHHHHHhC
Q 036290          701 GYLEDAKHVIEIM  713 (796)
Q Consensus       701 g~~~~A~~~~~~~  713 (796)
                      |+.++|.+.+++.
T Consensus       254 gd~~~a~~~L~kA  266 (301)
T 3u64_A          254 NNRAGFDEALDRA  266 (301)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            6677777666665

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=92.72  E-value=0.43  Score=37.87  Aligned_cols=66  Identities=11%  Similarity=0.047  Sum_probs=36.9

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhHhhcCC-----CCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 036290          653 TFVSVMSACSHKGLVDKGCLLFKSMDSQYGM-----QPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS  718 (796)
Q Consensus       653 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~  718 (796)
                      .+..+...+...|+++.|...++.+.+...-     .+...++..|..++.+.|++++|...++++ ...|+
T Consensus         7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~   78 (104)
T 2v5f_A            7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE   78 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence            3444555555666666666666655543210     122455666666666677777776666665 34454

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=92.56  E-value=0.26  Score=46.84  Aligned_cols=78  Identities=14%  Similarity=0.117  Sum_probs=51.5

Q ss_pred             HHHHHHHHhccCCC-C---ChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhc-cCCH
Q 036290          600 IKGARMAFDQSFNS-N---DVIVYNTLIMAYAHH-----GLVSEAMEIFDKMKLANLQPS--QATFVSVMSACSH-KGLV  667 (796)
Q Consensus       600 ~~~A~~~~~~~~~~-~---~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~-~g~~  667 (796)
                      ...|...+++.++- |   +-..|..+...|.+.     |+.++|.+.|++..+  +.|+  ..++......++. .|+.
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcCCH
Confidence            44555555444442 3   345677777777773     778888888888877  5663  5566666666666 4778


Q ss_pred             HHHHHHHHHhHh
Q 036290          668 DKGCLLFKSMDS  679 (796)
Q Consensus       668 ~~A~~~~~~~~~  679 (796)
                      +++.+++++...
T Consensus       257 ~~a~~~L~kAL~  268 (301)
T 3u64_A          257 AGFDEALDRALA  268 (301)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc
Confidence            888888877773

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=91.17  E-value=7.1  Score=34.00  Aligned_cols=127  Identities=14%  Similarity=0.132  Sum_probs=81.0

Q ss_pred             hccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036290          560 AAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIF  639 (796)
Q Consensus       560 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  639 (796)
                      ...|+++.|.++.+.+      -+...|..|.+.....|+++-|.+.| +...     -+..+.-.|...|+.+...++-
T Consensus        16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy-~~~~-----D~~~L~~Ly~~tg~~e~L~kla   83 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIY-QTQH-----SFDKLSFLYLVTGDVNKLSKMQ   83 (177)
T ss_dssp             HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHH-HHTT-----CHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHH-HHhC-----CHHHHHHHHHHhCCHHHHHHHH
Confidence            4556666666665554      25667777888888888888888777 3222     2455555667778877766665


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036290          640 DKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMP  714 (796)
Q Consensus       640 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  714 (796)
                      +.....|      -++.....+...|+++++.++|.+..    .-|...      -.....|-.+.|.++.++++
T Consensus        84 ~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~----r~~eA~------~~A~t~g~~~~a~~~~~~~~  142 (177)
T 3mkq_B           84 NIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG----SLPLAY------AVAKANGDEAAASAFLEQAE  142 (177)
T ss_dssp             HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT----CHHHHH------HHHHHTTCHHHHHHHHHHTT
T ss_pred             HHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC----ChHHHH------HHHHHcCcHHHHHHHHHHhC
Confidence            5555544      24555556677899999999986653    222211      11123567778888888874

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=91.03  E-value=1  Score=36.82  Aligned_cols=74  Identities=9%  Similarity=-0.001  Sum_probs=45.8

Q ss_pred             CCCchHHHHHHHHHHhcCCh---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceE
Q 036290          684 QPSPDCYGCLVDMLSRNGYL---EDAKHVIEIM-PFQP--SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHV  757 (796)
Q Consensus       684 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  757 (796)
                      .|++.+--.+..++.+..+.   .+++.++++. ...|  ....+..|.-++.+.|+++.|++..+.+++.+|+|..+..
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~  116 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  116 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence            45555555666666666543   3455666555 2223  1234556666677777888888888888888887766543

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=90.43  E-value=6.4  Score=32.23  Aligned_cols=137  Identities=15%  Similarity=0.078  Sum_probs=85.5

Q ss_pred             HhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCch---hHhHHHHHHHhcCCcc
Q 036290          424 CFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGY---ICSSLIKSYVNFGQLD  500 (796)
Q Consensus       424 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~  500 (796)
                      .-.|..++..++..+....   .+..-|+.+|.-....-+-+...+.++.+-+   ..|..   -...++.+|.+.+...
T Consensus        18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDis~C~NlKrVi~C~~~~n~~s   91 (172)
T 1wy6_A           18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDLDKCQNLKSVVECGVINNTLN   91 (172)
T ss_dssp             HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCGGGCSCTHHHHHHHHHTTCCC
T ss_pred             HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCcHhhhcHHHHHHHHHHhcchH
Confidence            4467777778877777653   3444556666555555555555555554422   11111   1223444454444333


Q ss_pred             hHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCC
Q 036290          501 NSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGF  580 (796)
Q Consensus       501 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  580 (796)
                                    ...+..+..+...|+-+.-.+++.++.. +.+|++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus        92 --------------e~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A           92 --------------EHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             --------------HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             --------------HHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence                          3345556777788888888888887533 3477888888888888888888888888888877776


Q ss_pred             C
Q 036290          581 N  581 (796)
Q Consensus       581 ~  581 (796)
                      +
T Consensus       157 k  157 (172)
T 1wy6_A          157 K  157 (172)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=90.00  E-value=2.8  Score=31.84  Aligned_cols=91  Identities=11%  Similarity=0.015  Sum_probs=66.4

Q ss_pred             hhccCChhhHHHHHHHHHHhCCCCCchhhHHHHHHHHccCChhHHHHHhcccCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 036290           54 SENLKSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLKMY  133 (796)
Q Consensus        54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~  133 (796)
                      -......++|.-|-+-+...+.  ...+--+-++++...|++++|..+.+.+.-||+..|-++-.  .+.|..+.+...+
T Consensus        16 gTG~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL   91 (115)
T 2uwj_G           16 GSGQHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRL   91 (115)
T ss_dssp             HHTTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred             HccchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHH
Confidence            3344567777777776665553  33343444567789999999999999999999999988766  4788888888888


Q ss_pred             HHHHHCCCCCCcccHH
Q 036290          134 VDMKTNGFMPNEFAVG  149 (796)
Q Consensus       134 ~~m~~~~~~p~~~t~~  149 (796)
                      .++..+| .|....|.
T Consensus        92 ~~la~sg-~p~~q~Fa  106 (115)
T 2uwj_G           92 AGLGGSS-DPALADFA  106 (115)
T ss_dssp             HHHHTCS-SHHHHHHH
T ss_pred             HHHHhCC-CHHHHHHH
Confidence            8888776 44444443

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=89.45  E-value=3.1  Score=31.71  Aligned_cols=92  Identities=10%  Similarity=0.002  Sum_probs=66.3

Q ss_pred             hhhccCChhhHHHHHHHHHHhCCCCCchhhHHHHHHHHccCChhHHHHHhcccCCCCcchHHHHHHHHHhcCCchHHHHH
Q 036290           53 LSENLKSRVLGTQVHGHIVKLGFTNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLKM  132 (796)
Q Consensus        53 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  132 (796)
                      .-......++|.-|-+-+...+.  ...+--+-++++...|++++|..+.+.+.-||+..|-++-..  +.|..+.+...
T Consensus        16 ~gTG~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~r   91 (116)
T 2p58_C           16 IGTGNHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESR   91 (116)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHH
T ss_pred             HHccchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHH
Confidence            33444567777777777665553  333434445677899999999999999999999999887664  78888888888


Q ss_pred             HHHHHHCCCCCCcccHH
Q 036290          133 YVDMKTNGFMPNEFAVG  149 (796)
Q Consensus       133 ~~~m~~~~~~p~~~t~~  149 (796)
                      +.++..+| .|....|.
T Consensus        92 L~~la~sg-~p~~q~Fa  107 (116)
T 2p58_C           92 LNRLARSQ-DPRIQTFV  107 (116)
T ss_dssp             HHHHTTCC-CHHHHHHH
T ss_pred             HHHHHhCC-CHHHHHHH
Confidence            88887766 34433443

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=89.17  E-value=17  Score=35.39  Aligned_cols=166  Identities=11%  Similarity=0.021  Sum_probs=103.2

Q ss_pred             hhHHHHHHHccCChhHHHHHhhccCCCCceeHHHHHHHHHhCCCchHHHHHH----HHHHHCCCCCCHhhHHHHHHhhcc
Q 036290          183 GCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCGYGFEALNVV----SSMLFEGITMDKYTFINALQGCSL  258 (796)
Q Consensus       183 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~~~~~ll~~~~~  258 (796)
                      |.++..-|.+.+++++|.+++-.           -...+.+.|+...|-++-    +.+.+.++++|......++..+..
T Consensus        38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~  106 (336)
T 3lpz_A           38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL  106 (336)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence            45556668889999999988542           234566778877766655    556677899999888888887766


Q ss_pred             CCCch-----HHHHHHHHHHHhc--CCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCCCCcchHHHHHHHHHhCCCccHH
Q 036290          259 VADFD-----IGRQIHGLIIRSE--VECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLFGGFSENKNPGQT  331 (796)
Q Consensus       259 ~~~~~-----~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  331 (796)
                      ...-+     -..+...+-.+.|  ..-|+.....+-..|.+.+++.+|..-|-.-.+++...+..++..+...+...++
T Consensus       107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~  186 (336)
T 3lpz_A          107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTA  186 (336)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH
T ss_pred             CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccH
Confidence            55322     1233344444555  3347888888899999999999999888532223335665555555444433222


Q ss_pred             HHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHH
Q 036290          332 ASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLAL  374 (796)
Q Consensus       332 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~  374 (796)
                      --.+-              ..+| .+...+++..|..+++...
T Consensus       187 dlfia--------------RaVL-~yL~l~n~~~A~~~~~~f~  214 (336)
T 3lpz_A          187 PLYCA--------------RAVL-PYLLVANVRAANTAYRIFT  214 (336)
T ss_dssp             HHHHH--------------HHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHH--------------HHHH-HHHHhCCHHHHHHHHHHHH
Confidence            11111              1222 2344567777777665544

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=89.12  E-value=17  Score=35.19  Aligned_cols=131  Identities=6%  Similarity=-0.030  Sum_probs=79.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHH----HHHHHhcCCcccHHHHHHHHHHhcc
Q 036290          385 TSSLIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKT----FCNIWESGVEVNGCTFFYVVETCCR  460 (796)
Q Consensus       385 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~g~~p~~~t~~~ll~~~~~  460 (796)
                      |.++..-|.+.+++++|.+++..           -...+.+.|+...|.++    ++-..+.+++++......++..+..
T Consensus        36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~  104 (312)
T 2wpv_A           36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE  104 (312)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            44666777888888888887543           23445566776665554    4455566888888887777776655


Q ss_pred             cCc-HHHHHHHHHHHHH----hCC--CCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHH
Q 036290          461 SEN-QQMVGQIHGAIIK----TGF--SSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVH  526 (796)
Q Consensus       461 ~~~-~~~a~~~~~~~~~----~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~  526 (796)
                      ... -..-.++++.+++    .|-  ..++.....+...|.+.|++.+|..-|-.....+...+..++.-+..
T Consensus       105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~  177 (312)
T 2wpv_A          105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLC  177 (312)
T ss_dssp             CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence            321 1122344444433    332  23667778888888888888888876653332344555544444433

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=88.01  E-value=21  Score=34.85  Aligned_cols=110  Identities=15%  Similarity=0.154  Sum_probs=65.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHhc
Q 036290          588 SAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEI----FDKMKLANLQPSQATFVSVMSACSH  663 (796)
Q Consensus       588 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~~  663 (796)
                      .++..=|.+.+++++|.+++            ..-...+.+.|+...|-.+    ++-..+.++++|......++..+..
T Consensus        39 RTi~~Ry~~~k~y~eAidLL------------~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~  106 (336)
T 3lpz_A           39 RLVAARYSKQGNWAAAVDIL------------ASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL  106 (336)
T ss_dssp             HHHHHHHHHTTCHHHHHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhcCHHHHHHHH------------HHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence            34555577888888888877            2333445556665554443    3555666777777777777766655


Q ss_pred             cCC--HHHHHHHHHHhH---hhcCC--CCCchHHHHHHHHHHhcCChHHHHHHH
Q 036290          664 KGL--VDKGCLLFKSMD---SQYGM--QPSPDCYGCLVDMLSRNGYLEDAKHVI  710 (796)
Q Consensus       664 ~g~--~~~A~~~~~~~~---~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~  710 (796)
                      ...  .+. ..+.+++.   .++|-  .-|+.....+...|.+.|++.+|...|
T Consensus       107 ~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~  159 (336)
T 3lpz_A          107 FQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL  159 (336)
T ss_dssp             SCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence            442  111 11222221   12232  234677778888888888888887776

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=87.74  E-value=15  Score=33.06  Aligned_cols=142  Identities=12%  Similarity=0.082  Sum_probs=69.2

Q ss_pred             CCCchhhHHHHHHHHccCChhHHHHHhcccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 036290           76 TNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVC  155 (796)
Q Consensus        76 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~  155 (796)
                      .++..+-...+..+++.|..+....+.+.+..++...-...+.++.+.+..+ +...+.++..   .+|...-...+.++
T Consensus        30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL  105 (211)
T 3ltm_A           30 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVAL  105 (211)
T ss_dssp             CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHH
Confidence            3455555556666666666555555555555666666666666666666533 3333333332   24444445555555


Q ss_pred             hccCChhHHHHHHHHHHHhcCCCChhHhhHHHHHHHccCChhHHHHHhhccCCCCceeHHHHHHHHHhCC
Q 036290          156 VSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCG  225 (796)
Q Consensus       156 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g  225 (796)
                      ++.++.+....+.+ +.   -.++..+....+.++++.|+.+....+.+.+..++...-...+.++.+.+
T Consensus       106 ~~~~~~~~~~~L~~-~l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~  171 (211)
T 3ltm_A          106 GQIGDERAVEPLIK-AL---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG  171 (211)
T ss_dssp             HHHCCGGGHHHHHH-HT---TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred             HHhCcHHHHHHHHH-HH---hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            55555433322222 11   24455555555555555555443333333333344333333344444443

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=87.68  E-value=15  Score=32.83  Aligned_cols=142  Identities=11%  Similarity=0.056  Sum_probs=71.1

Q ss_pred             CCCchhhHHHHHHHHccCChhHHHHHhcccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 036290           76 TNDIFLQNNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVC  155 (796)
Q Consensus        76 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~  155 (796)
                      .+|..+-...+.++++.|..+....+.+.+..++...-...+.++.+.|..+. ...+.++..   .++...-...+.++
T Consensus        25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL  100 (201)
T 3ltj_A           25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAAVAL  100 (201)
T ss_dssp             CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHHHHH
Confidence            34444555555555556654445555555556666555566666666665433 333333332   24555555556666


Q ss_pred             hccCChhHHHHHHHHHHHhcCCCChhHhhHHHHHHHccCChhHHHHHhhccCCCCceeHHHHHHHHHhCC
Q 036290          156 VSMGASEFGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSISSDDVGCWNAMIGGYAHCG  225 (796)
Q Consensus       156 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g  225 (796)
                      ++.++.+....+...+    -.++..+....+.++++.|+.+....+.+.+..++...-...+.++.+.|
T Consensus       101 ~~~~~~~~~~~L~~~l----~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~  166 (201)
T 3ltj_A          101 GQIGDERAVEPLIKAL----KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG  166 (201)
T ss_dssp             HHHCCGGGHHHHHHHT----TCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred             HHhCcHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            6665543333332221    24455566666666666655444444444444444333334444444444

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=87.44  E-value=8.8  Score=31.21  Aligned_cols=83  Identities=5%  Similarity=-0.085  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH---HHHHHhccCCCC----ChhHHHHHHHHHHhcCChHHHHHH
Q 036290          566 QRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKG---ARMAFDQSFNSN----DVIVYNTLIMAYAHHGLVSEAMEI  638 (796)
Q Consensus       566 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~  638 (796)
                      ..+++-+......|. ++..+--.+..++.++....+   ++.++.+.+...    .....-.|.-++.+.|++++|.+.
T Consensus        18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~   96 (126)
T 1nzn_A           18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   96 (126)
T ss_dssp             HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            334444444444333 455555555566666655544   555554444432    122333455667777888888888


Q ss_pred             HHHHHHCCCCCCH
Q 036290          639 FDKMKLANLQPSQ  651 (796)
Q Consensus       639 ~~~m~~~g~~p~~  651 (796)
                      ++.+.+  +.|+.
T Consensus        97 ~~~lL~--~eP~n  107 (126)
T 1nzn_A           97 VRGLLQ--TEPQN  107 (126)
T ss_dssp             HHHHHH--HCTTC
T ss_pred             HHHHHH--hCCCC
Confidence            887777  66743

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=87.09  E-value=45  Score=37.76  Aligned_cols=127  Identities=16%  Similarity=0.150  Sum_probs=63.3

Q ss_pred             HHHHcCChhHHHHHHHHHHHcCCCCCHHHHHH--HHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 036290          523 ALVHQGHNHEAVTIFHSLVEAGEKPDEYILGT--ILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDI  600 (796)
Q Consensus       523 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~--ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  600 (796)
                      ++...|+.+.+..+++.+.... .|....-..  +.-+|+..|+.....+++..+.... ..++.....+.-++...|+.
T Consensus       533 Gll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~  610 (963)
T 4ady_A          533 ALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDY  610 (963)
T ss_dssp             HHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSC
T ss_pred             HhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCH
Confidence            4445677777777777766531 222222222  2235666777777766777666532 12333333333334445666


Q ss_pred             HHHHHHHhccCCCCChhHHHHHHH--HHHhcCCh-HHHHHHHHHHHHCCCCCCHHHH
Q 036290          601 KGARMAFDQSFNSNDVIVYNTLIM--AYAHHGLV-SEAMEIFDKMKLANLQPSQATF  654 (796)
Q Consensus       601 ~~A~~~~~~~~~~~~~~~~~~li~--~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~  654 (796)
                      +.+.+++.......|...-....-  +....|.. .++..++..+..   .+|..+-
T Consensus       611 e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vr  664 (963)
T 4ady_A          611 TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVR  664 (963)
T ss_dssp             SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHH
Confidence            666666633333444444333332  33333332 566667777753   4555443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=86.97  E-value=5.2  Score=33.54  Aligned_cols=115  Identities=10%  Similarity=0.083  Sum_probs=76.6

Q ss_pred             cCCCCChhHHHHHHHHHHhcCCh------HHHHHHHHHHHHCCCCCCHHH----HHHHHH---HHhccCCHHHHHHHHHH
Q 036290          610 SFNSNDVIVYNTLIMAYAHHGLV------SEAMEIFDKMKLANLQPSQAT----FVSVMS---ACSHKGLVDKGCLLFKS  676 (796)
Q Consensus       610 ~~~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~t----~~~ll~---~~~~~g~~~~A~~~~~~  676 (796)
                      ++...|..+|-..+....+.|+.      ++..++|++.... ++|+...    |..+--   .+...++.++|.++|+.
T Consensus         7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~   85 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQM   85 (161)
T ss_dssp             ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHH
T ss_pred             eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            45556888888888888888988      8888889888774 6665321    222211   12334789999999999


Q ss_pred             hHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 036290          677 MDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS-PTVYRSLLS  727 (796)
Q Consensus       677 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~  727 (796)
                      +.+. .-+- ...|.....--.++|+...|.+++.+. +..|. .....+.+.
T Consensus        86 a~~~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~  136 (161)
T 4h7y_A           86 ARAN-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR  136 (161)
T ss_dssp             HHHH-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred             HHHH-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence            9754 2222 667777777778899999999999887 44443 233443333

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.94  E-value=31  Score=35.66  Aligned_cols=185  Identities=12%  Similarity=0.141  Sum_probs=109.8

Q ss_pred             CChhHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHH-hCCCCchh--HHHHHHHHHHhcCC
Q 036290          528 GHNHEAVTIFHSLVEA-----GEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIK-LGFNTEVY--VASAVIDAYAKCGD  599 (796)
Q Consensus       528 ~~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~--~~~~li~~~~~~g~  599 (796)
                      |+++.|++.+-.+.+.     ...-.......++..|...++++...+.+..+.+ +|..+...  ....++..+.....
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~  109 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS  109 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence            4556666655554332     2233455566677777777777777666665554 33322111  11222222222332


Q ss_pred             HH--HHHHHHhccCCC---C-------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHh
Q 036290          600 IK--GARMAFDQSFNS---N-------DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLA--NLQPS---QATFVSVMSACS  662 (796)
Q Consensus       600 ~~--~A~~~~~~~~~~---~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~ll~~~~  662 (796)
                      .+  .-..+. +.+..   +       .......|...+...|++.+|..++.++...  |..+.   ...+..-++.|.
T Consensus       110 ~d~~~~~~~i-~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l  188 (445)
T 4b4t_P          110 LDLNTRISVI-ETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI  188 (445)
T ss_dssp             THHHHHHHHH-HCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHH-HHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            22  223333 22221   1       1223456788899999999999999998753  22221   134566678899


Q ss_pred             ccCCHHHHHHHHHHhHhh-cCC--CCC--chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          663 HKGLVDKGCLLFKSMDSQ-YGM--QPS--PDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       663 ~~g~~~~A~~~~~~~~~~-~~~--~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      ..+++..|..++.++... ...  .|+  ...+...+..+...+++.+|.+.|.+.
T Consensus       189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~  244 (445)
T 4b4t_P          189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI  244 (445)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            999999999999987532 112  222  356678888889999999998887766

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=86.72  E-value=3.1  Score=42.34  Aligned_cols=71  Identities=11%  Similarity=0.221  Sum_probs=53.5

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHh----hcCCCCCchHHH
Q 036290          619 YNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDS----QYGMQPSPDCYG  691 (796)
Q Consensus       619 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~~~~~  691 (796)
                      ...++..+...|++++|...+..+..  ..| +...+..+|.++.+.|+..+|++.|+.+.+    +.|+.|++.+-.
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~  249 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA  249 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            34556677788888888888888876  556 777888888888888888888888887653    457888765543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=86.70  E-value=3.7  Score=38.39  Aligned_cols=124  Identities=10%  Similarity=-0.007  Sum_probs=77.8

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCCh
Q 036290          625 AYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYL  703 (796)
Q Consensus       625 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  703 (796)
                      ...+.|+++++++....-.+  -.| |...-..+++-+|-.|++++|.+-++.+.   .+.|+...-..+.+-+.++...
T Consensus         6 ~ll~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a---~l~p~~~~~a~~yr~lI~aE~~   80 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSI---KLFPEYLPGASQLRHLVKAAQA   80 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCchhhHHHHHHHHHHHHHHH
Confidence            45667888888888877777  456 66777778888999999999999888887   4566633222222222221111


Q ss_pred             HHHHHHHHhC--C-CCCCHHHH-HHHHHH--HHhcCChHHHHHHHHHHHccCCCCCcc
Q 036290          704 EDAKHVIEIM--P-FQPSPTVY-RSLLSG--CRIHGNKELGEWASEKLLLLLPKNDAA  755 (796)
Q Consensus       704 ~~A~~~~~~~--~-~~p~~~~~-~~l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~  755 (796)
                      .+  ++|..-  + +.-.+.-| ..++.+  ....|+.++|..+-+.+++..|..+..
T Consensus        81 R~--~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~  136 (273)
T 1zbp_A           81 RK--DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL  136 (273)
T ss_dssp             HH--HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred             HH--HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCC
Confidence            11  222211  1 11122224 455555  346699999999999999988876653

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.65  E-value=20  Score=37.02  Aligned_cols=184  Identities=7%  Similarity=0.019  Sum_probs=114.1

Q ss_pred             CchHHHHHHHHHHHHh-----CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C--ChhHHHHHH----HHHHhcC
Q 036290          563 GAYQRTKSIHPFVIKL-----GFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N--DVIVYNTLI----MAYAHHG  630 (796)
Q Consensus       563 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~--~~~~~~~li----~~~~~~g  630 (796)
                      ++++.|.+.+-.+.+.     ...........++..+...|+++...+.+ ..+.. .  .......++    .......
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i-~~Lskkr~qlk~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQL-TLLSKKHGQLKLSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHH-HHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence            5677777766655542     34456778888999999999999987777 33322 1  122222333    3333333


Q ss_pred             ChHHH--HHHHHHHHH--CC-CCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhc-CCCCC---chHHHHHHHHHH
Q 036290          631 LVSEA--MEIFDKMKL--AN-LQP---SQATFVSVMSACSHKGLVDKGCLLFKSMDSQY-GMQPS---PDCYGCLVDMLS  698 (796)
Q Consensus       631 ~~~~A--~~~~~~m~~--~g-~~p---~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~~p~---~~~~~~l~~~~~  698 (796)
                      ..+..  ..+.+....  .| +..   .......|...+...|++.+|..++..+.... +..+.   ...+...++.|.
T Consensus       109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l  188 (445)
T 4b4t_P          109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI  188 (445)
T ss_dssp             TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            33321  122222111  11 111   11223556788889999999999999987542 22222   567778889999


Q ss_pred             hcCChHHHHHHHHhC-----CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 036290          699 RNGYLEDAKHVIEIM-----PFQPSP----TVYRSLLSGCRIHGNKELGEWASEKLLL  747 (796)
Q Consensus       699 ~~g~~~~A~~~~~~~-----~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~  747 (796)
                      ..+++..|..++.+.     ...+++    ..+...+..+...+++.+|-+.|..+++
T Consensus       189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            999999999999886     122222    2345556667778899888888887775

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=86.48  E-value=3.7  Score=35.19  Aligned_cols=120  Identities=8%  Similarity=-0.069  Sum_probs=57.8

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH-------HHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCc
Q 036290          616 VIVYNTLIMAYAHHGLVSEAMEIFDKMKLAN-LQPSQ-------ATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSP  687 (796)
Q Consensus       616 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-------~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~  687 (796)
                      ...+..-++.+...|.++.|+-+.+.+.... ..|+.       .++..+.+++...|++.+|...|++..+....-+..
T Consensus        20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~   99 (167)
T 3ffl_A           20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT   99 (167)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            3334444555666666666666655543310 12221       234445566666677777777766654332222221


Q ss_pred             h-HHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 036290          688 D-CYGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKL  745 (796)
Q Consensus       688 ~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  745 (796)
                      . ....+.    -......      ......+...-..+..|+.+.|++++|+.+++.+
T Consensus       100 ~s~~~~~~----~~ss~p~------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A          100 SKVRPSTG----NSASTPQ------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             CCcccccc----ccCCCcc------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence            1 111010    0000000      0112223344455778889999999999998864

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=86.27  E-value=13  Score=41.15  Aligned_cols=50  Identities=14%  Similarity=0.098  Sum_probs=25.5

Q ss_pred             hccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036290          662 SHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIMP  714 (796)
Q Consensus       662 ~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~  714 (796)
                      ...|+++.|+++-++..   ...|+ ..+|..|..+|.+.|+++.|+-.++.++
T Consensus       348 l~K~~~elAL~~Ak~AV---~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          348 LNRGDYELALGVSNTST---ELALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHTTCHHHHHHHHHHHH---HHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             hccCcHHHHHHHHHHHH---hcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            34455555555555554   23444 4555555555555555555555555553

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=85.26  E-value=4.8  Score=34.50  Aligned_cols=136  Identities=10%  Similarity=0.019  Sum_probs=73.9

Q ss_pred             hCCCCchhHHHH--HHHHHHhcCCHHHHHHHHhccCCC----CCh-------hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036290          578 LGFNTEVYVASA--VIDAYAKCGDIKGARMAFDQSFNS----NDV-------IVYNTLIMAYAHHGLVSEAMEIFDKMKL  644 (796)
Q Consensus       578 ~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~~~~~----~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~  644 (796)
                      .|+.|....++.  -++.+...|.++.|+-+.+-.+..    ++.       .++..+.+++...|++.+|...|++..+
T Consensus        12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq   91 (167)
T 3ffl_A           12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ   91 (167)
T ss_dssp             ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            456665554443  367788899999998777332221    232       2566778899999999999999999754


Q ss_pred             CC-CCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCC-CCHHH
Q 036290          645 AN-LQPSQA-TFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIMPFQ-PSPTV  721 (796)
Q Consensus       645 ~g-~~p~~~-t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~  721 (796)
                      .. .-|... +...+-    .......          .....++.+.-.-+..+|.+.|++++|+.+++..+.+ -++.+
T Consensus        92 ~~k~l~k~~s~~~~~~----~~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kv  157 (167)
T 3ffl_A           92 QKKALSKTSKVRPSTG----NSASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKI  157 (167)
T ss_dssp             HHHCC----------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHH
T ss_pred             HHHHHhcCCCcccccc----ccCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHH
Confidence            21 222211 111110    0000000          0023334455556889999999999999999998543 34444


Q ss_pred             HHHHHH
Q 036290          722 YRSLLS  727 (796)
Q Consensus       722 ~~~l~~  727 (796)
                      --.|..
T Consensus       158 nm~Lak  163 (167)
T 3ffl_A          158 NMLLAN  163 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444433

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=84.95  E-value=32  Score=34.64  Aligned_cols=57  Identities=7%  Similarity=-0.046  Sum_probs=24.7

Q ss_pred             HHHHHhccCCHHHHHHHHHHhHhhcCCCCC----chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          657 VMSACSHKGLVDKGCLLFKSMDSQYGMQPS----PDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       657 ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      +...|...|++.+|.+++.++.+...-..|    ...+..-+..|...|++.++...+.+.
T Consensus       105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a  165 (394)
T 3txn_A          105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA  165 (394)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            344444555555555555444433111111    233333444444555555555554443

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=83.87  E-value=32  Score=33.23  Aligned_cols=113  Identities=7%  Similarity=0.113  Sum_probs=70.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHH----HHHHHHHCCCCCCHHHHHHHHHHHh
Q 036290          587 ASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAME----IFDKMKLANLQPSQATFVSVMSACS  662 (796)
Q Consensus       587 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~----~~~~m~~~g~~p~~~t~~~ll~~~~  662 (796)
                      |.++..=|.+.+++++|.+++            ..-...+.+.|+...|-.    +.+...+.+++++......++..+.
T Consensus        36 ~Rtl~~Ry~~~~~~~eAidlL------------~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~  103 (312)
T 2wpv_A           36 LRTIANRYVRSKSYEHAIELI------------SQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA  103 (312)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCHHHHHHHH------------HHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            345566678888899998887            233445566777666555    3555566778888877777776665


Q ss_pred             ccCCHH-HHHHHHHHhH---hhcCC--CCCchHHHHHHHHHHhcCChHHHHHHHH
Q 036290          663 HKGLVD-KGCLLFKSMD---SQYGM--QPSPDCYGCLVDMLSRNGYLEDAKHVIE  711 (796)
Q Consensus       663 ~~g~~~-~A~~~~~~~~---~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~  711 (796)
                      ....-+ .=.++++++.   .+.|-  .-++.....+...|.+.|++.+|...|-
T Consensus       104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            422111 0112222222   12122  2357788889999999999999988764

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=82.32  E-value=5  Score=30.83  Aligned_cols=63  Identities=8%  Similarity=-0.012  Sum_probs=45.9

Q ss_pred             CchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChhHHHHHHHHHHHhcCCCChhHhhHHHH
Q 036290          125 EFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASEFGYSIHCFALKIRIEKNPFVGCSVLN  188 (796)
Q Consensus       125 ~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~  188 (796)
                      +..+..+-++.+-...+.|++....+.|++|.+.+|+..|..+++-+...- .....+|..++.
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq   87 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ   87 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence            344667777788878888898888999999988888888888888776432 222445655544

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=81.97  E-value=20  Score=29.44  Aligned_cols=63  Identities=10%  Similarity=0.026  Sum_probs=47.9

Q ss_pred             CchHHHHHHHHHHhcCChHHHHHHHHh-C-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 036290          686 SPDCYGCLVDMLSRNGYLEDAKHVIEI-M-PFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLL  748 (796)
Q Consensus       686 ~~~~~~~l~~~~~~~g~~~~A~~~~~~-~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  748 (796)
                      +......-++.+..+|+.+.-.+++.. . ..+|++...-.+..+|.+-|+..+|.+++.++=+.
T Consensus        90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k  154 (172)
T 1wy6_A           90 LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK  154 (172)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            344555666777788888888888888 4 45677888888888899999999998888887654

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=81.57  E-value=11  Score=29.01  Aligned_cols=63  Identities=11%  Similarity=0.192  Sum_probs=48.2

Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHH
Q 036290          631 LVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVD  695 (796)
Q Consensus       631 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~  695 (796)
                      +.-+..+-++.+....+-|+.....+.+++|.+.+++..|..+|+.++.+  +.+...+|..++.
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq   87 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ   87 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence            34456666777777778899999999999999999999999999988755  3444556766654

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=81.47  E-value=11  Score=41.61  Aligned_cols=125  Identities=13%  Similarity=0.064  Sum_probs=77.1

Q ss_pred             HHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHhccC-CHHHHHHHHHHhHhh-----cCCCCCc---
Q 036290          620 NTLIMAYAHHGL-VSEAMEIFDKMKLANLQPSQATF--VSVMSACSHKG-LVDKGCLLFKSMDSQ-----YGMQPSP---  687 (796)
Q Consensus       620 ~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~g-~~~~A~~~~~~~~~~-----~~~~p~~---  687 (796)
                      ..++..+...++ .+.|..+++++.+  ..|...++  ..++..+...+ +--+|.+++.+..+.     ....+..   
T Consensus       252 ~~Ll~~~~~t~~~~~~a~~~le~L~~--~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~  329 (754)
T 4gns_B          252 YSLKSFIAITPSLVDFTIDYLKGLTK--KDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS  329 (754)
T ss_dssp             HHHHHHHHTCGGGHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHHh--hCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence            445555555555 5778888888887  34543332  22333333332 222344444443321     0222221   


Q ss_pred             --------hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 036290          688 --------DCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLL  746 (796)
Q Consensus       688 --------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  746 (796)
                              ..+..=++-+...|+++-|+++-++. ...| +..+|..|..+|...||++.|+-.+..+-
T Consensus       330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence                    11222234456789999999999988 4556 57899999999999999999999998873

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=80.17  E-value=18  Score=34.36  Aligned_cols=19  Identities=0%  Similarity=-0.246  Sum_probs=8.6

Q ss_pred             HHHHHccCChhHHHHHhcc
Q 036290           86 IAMYSKCGYFGWGLRVFDE  104 (796)
Q Consensus        86 i~~~~~~g~~~~A~~~~~~  104 (796)
                      +...++.|+.+-+..+++.
T Consensus        43 L~~A~~~g~~~~v~~Ll~~   61 (285)
T 1wdy_A           43 LHNAVQMSREDIVELLLRH   61 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHc
Confidence            3333444555544444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	796
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.003

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 31/291 (10%), Positives = 71/291 (24%), Gaps = 38/291 (13%)

Query: 388 LIYMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVN 447
            +Y         + H         +       L+       D +                
Sbjct: 75  NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 134

Query: 448 GCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSN 507
            C    +          +     +   I+T   +     S+L   +   G++  +     
Sbjct: 135 YCVRSDLGNLLKALGRLEEAKACYLKAIET-QPNFAVAWSNLGCVFNAQGEIWLAIHHFE 193

Query: 508 GAERLD---MASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDE--YILGTILNSC--- 559
            A  LD   + ++  + + L        AV  +   +            L  +       
Sbjct: 194 KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLI 253

Query: 560 -AAIGAYQRTKSIHPFVIKLGFN--------------------------TEVYVASAVID 592
             AI  Y+R   + P       N                          T     + + +
Sbjct: 254 DLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313

Query: 593 AYAKCGDIKGARMAFDQS--FNSNDVIVYNTLIMAYAHHGLVSEAMEIFDK 641
              + G+I+ A   + ++          ++ L       G + EA+  + +
Sbjct: 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	796
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.84
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.82
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.46
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.32
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.91
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.83
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.83
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.82
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.81
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.75
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.7
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.59
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.58
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.48
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.46
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.45
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.37
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.35
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.33
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.26
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.21
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.15
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.1
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.08
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.07
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.0
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.92
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.79
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.77
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.75
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.74
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.73
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.72
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.67
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.66
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.64
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.63
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.61
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.53
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.41
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.41
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.39
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.36
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.33
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.32
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.3
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.3
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.3
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.21
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.05
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	96.95
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.45
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.32
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	95.61
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	94.55
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	93.38
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	92.4
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	91.45
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	88.41
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	83.52
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	82.29
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	81.19

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.1e-18  Score=181.52  Aligned_cols=363  Identities=13%  Similarity=0.078  Sum_probs=247.2

Q ss_pred             HhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhCCC---CChhhHHHHHHHHHhcCCchHH
Q 036290          356 QCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCGAVEMAHSVFDNVSY---KNITTWNELLSGYCFNCCDADV  432 (796)
Q Consensus       356 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a  432 (796)
                      .+.+.|++++|.+.++.+.+.. +-+...+..+...|.+.|++++|...|++..+   .+..+|..+...+.+.|++++|
T Consensus         8 ~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A   86 (388)
T d1w3ba_           8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA   86 (388)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccc
Confidence            3445566666666666655542 22344555555555555666655555555432   2334455555555555555555


Q ss_pred             HHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCC--
Q 036290          433 LKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAE--  510 (796)
Q Consensus       433 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--  510 (796)
                      +..+.....                                   .. +.+..............+....+........  
T Consensus        87 ~~~~~~~~~-----------------------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (388)
T d1w3ba_          87 IEHYRHALR-----------------------------------LK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY  130 (388)
T ss_dssp             HHHHHHHHH-----------------------------------HC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH
T ss_pred             ccccccccc-----------------------------------cc-ccccccccccccccccccccccccccccccccc
Confidence            555555544                                   32 2222222222333333333333332222111  


Q ss_pred             -CCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHH
Q 036290          511 -RLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASA  589 (796)
Q Consensus       511 -~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  589 (796)
                       .................+....+...+.+..... +-+...+..+...+...|+++.|...++...+.... +...+..
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~  208 (388)
T d1w3ba_         131 NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYIN  208 (388)
T ss_dssp             CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred             ccccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHH
Confidence             1233334444455556677777777777765542 334556666777788888888888888888776544 5667888


Q ss_pred             HHHHHHhcCCHHHHHHHHhccCC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCC
Q 036290          590 VIDAYAKCGDIKGARMAFDQSFN--SNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGL  666 (796)
Q Consensus       590 li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~  666 (796)
                      +...+...|++++|...+.....  ..+...+..+...+...|++++|...|++..+  +.| +..++..+...+...|+
T Consensus       209 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~  286 (388)
T d1w3ba_         209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGS  286 (388)
T ss_dssp             HHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSC
T ss_pred             HhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence            88889999999999988855443  24667788888999999999999999999988  667 56778888899999999


Q ss_pred             HHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHH
Q 036290          667 VDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS-PTVYRSLLSGCRIHGNKELGEWASEK  744 (796)
Q Consensus       667 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~  744 (796)
                      +++|.+.++.....  .+.+...+..+..++.+.|++++|++.+++. ...|+ ..+|..+..++.+.|++++|+..+++
T Consensus       287 ~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  364 (388)
T d1w3ba_         287 VAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE  364 (388)
T ss_dssp             HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999988744  3344788889999999999999999999987 56664 56788899999999999999999999


Q ss_pred             HHccCCCCCcceEEecC
Q 036290          745 LLLLLPKNDAAHVLLSK  761 (796)
Q Consensus       745 ~~~~~p~~~~~~~~l~~  761 (796)
                      +++++|+++.+|..|++
T Consensus       365 al~l~P~~~~a~~~lg~  381 (388)
T d1w3ba_         365 AIRISPTFADAYSNMGN  381 (388)
T ss_dssp             HHTTCTTCHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHH
Confidence            99999999988876643

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.5e-17  Score=170.08  Aligned_cols=375  Identities=13%  Similarity=0.090  Sum_probs=258.8

Q ss_pred             HHHHHHhCCCccHHHHHHHHHHHcCCCCC-cchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 036290          318 LFGGFSENKNPGQTASLFHKFILSGSRPN-HVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLIYMFCRCG  396 (796)
Q Consensus       318 li~~~~~~~~~~~a~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g  396 (796)
                      +...+.+.|++++|++.|+++.+.  .|+ ...+..+...+.+.|++++|...++.+.+.. +.+...+..+..+|.+.|
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g   81 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG   81 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhc
Confidence            345677899999999999999876  354 5567777888899999999999999998874 446778899999999999


Q ss_pred             ChHHHHHHHHhCCC---CChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHH
Q 036290          397 AVEMAHSVFDNVSY---KNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGA  473 (796)
Q Consensus       397 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~  473 (796)
                      ++++|...+.....   .+...+..........+....+............... .............+....+...+..
T Consensus        82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  160 (388)
T d1w3ba_          82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY-CVRSDLGNLLKALGRLEEAKACYLK  160 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT-HHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccchhhhhHHHHHH
Confidence            99999999988764   3444455555555566666666666655554433322 2223333344444555555555555


Q ss_pred             HHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 036290          474 IIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILG  553 (796)
Q Consensus       474 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~  553 (796)
                      ..... +.+...                               +..+...+...|++++|...+++..+.. +-+...+.
T Consensus       161 ~~~~~-~~~~~~-------------------------------~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~  207 (388)
T d1w3ba_         161 AIETQ-PNFAVA-------------------------------WSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYI  207 (388)
T ss_dssp             HHHHC-TTCHHH-------------------------------HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             hhccC-cchhHH-------------------------------HHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHH
Confidence            44433 223333                               3444444455555555555555554431 22334455


Q ss_pred             HHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCC
Q 036290          554 TILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGL  631 (796)
Q Consensus       554 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~  631 (796)
                      .+...+...|++++|...++.....+.. +...+..+...+.+.|++++|...|++.+..  .+...|..+...+...|+
T Consensus       208 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  286 (388)
T d1w3ba_         208 NLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS  286 (388)
T ss_dssp             HHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC
T ss_pred             HHhhhhhccccHHHHHHHHHHhHHHhhh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            5555566666666666666655554433 4455566677777777777777777655443  366778888888888899


Q ss_pred             hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHH
Q 036290          632 VSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVI  710 (796)
Q Consensus       632 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~  710 (796)
                      +++|.+.++..... .+.+...+..+...+...|++++|++.+++..   .+.|+ +.++..++.+|.+.|++++|.+.+
T Consensus       287 ~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  362 (388)
T d1w3ba_         287 VAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKAL---EVFPEFAAAHSNLASVLQQQGKLQEALMHY  362 (388)
T ss_dssp             HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT---TSCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred             HHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999988888773 23366777888888889999999999998887   56676 677888899999999999999999


Q ss_pred             HhC-CCCCC-HHHHHHHHHHHHhcCC
Q 036290          711 EIM-PFQPS-PTVYRSLLSGCRIHGN  734 (796)
Q Consensus       711 ~~~-~~~p~-~~~~~~l~~~~~~~g~  734 (796)
                      ++. ...|+ ...|..+..++.+.||
T Consensus       363 ~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         363 KEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            887 66774 5678888888887776

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.3e-12  Score=131.25  Aligned_cols=234  Identities=13%  Similarity=0.012  Sum_probs=152.5

Q ss_pred             HHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 036290          523 ALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKG  602 (796)
Q Consensus       523 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  602 (796)
                      .+.+.|++++|...|++..+.. +-+..+|..+..++...|+++.|...+....+.... +...+..+...|...|++++
T Consensus        28 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~  105 (323)
T d1fcha_          28 RRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQ  105 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccccccc
Confidence            3445555555555555554431 223444555555555555555555555555554332 34445555555555566655


Q ss_pred             HHHHHhccCCC-C----------------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhcc
Q 036290          603 ARMAFDQSFNS-N----------------DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQ-PSQATFVSVMSACSHK  664 (796)
Q Consensus       603 A~~~~~~~~~~-~----------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~  664 (796)
                      |.+.+++.+.. |                +.......+..+...+.+.+|.+.+.+..+.... ++...+..+...+...
T Consensus       106 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~  185 (323)
T d1fcha_         106 ACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS  185 (323)
T ss_dssp             HHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT
T ss_pred             cccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence            55555332221 1                1111112233445566788899999888773322 2556777888889999


Q ss_pred             CCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHH
Q 036290          665 GLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWA  741 (796)
Q Consensus       665 g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~  741 (796)
                      |++++|+..+++...   ..|+ ...|..++.+|.+.|++++|.+.+++. ...| +..+|..++.+|.+.|++++|+..
T Consensus       186 ~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~  262 (323)
T d1fcha_         186 GEYDKAVDCFTAALS---VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH  262 (323)
T ss_dssp             TCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHhhhhcccccccc---cccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHH
Confidence            999999999999883   4566 788889999999999999999999987 4555 467899999999999999999999


Q ss_pred             HHHHHccCCCCCcceEEecC
Q 036290          742 SEKLLLLLPKNDAAHVLLSK  761 (796)
Q Consensus       742 ~~~~~~~~p~~~~~~~~l~~  761 (796)
                      ++++++++|++...+..++.
T Consensus       263 ~~~al~l~p~~~~~~~~~~~  282 (323)
T d1fcha_         263 FLEALNMQRKSRGPRGEGGA  282 (323)
T ss_dssp             HHHHHHHHHTC------CCC
T ss_pred             HHHHHHhCCcChhhhhhhHH
Confidence            99999999999887766554

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=4.8e-11  Score=119.49  Aligned_cols=261  Identities=11%  Similarity=0.009  Sum_probs=158.5

Q ss_pred             HHHhcccCcHHHHHHHHHHHHHhCCCCCchhHhHHHHHHHhcCCcchHHHHHhcCCC---CCHhhHHHHHHHHHHcCChh
Q 036290          455 VETCCRSENQQMVGQIHGAIIKTGFSSCGYICSSLIKSYVNFGQLDNSFEFSNGAER---LDMASWGAMMSALVHQGHNH  531 (796)
Q Consensus       455 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~  531 (796)
                      -..+.+.|++++|...++.+++.. |-+...+..+..+|...|++++|...|++..+   .+...|..+...|...|+++
T Consensus        26 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  104 (323)
T d1fcha_          26 GLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR  104 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccccc
Confidence            334556677777777777776654 44556666666677777777777666665443   24555666666666667777


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 036290          532 EAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSF  611 (796)
Q Consensus       532 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~  611 (796)
                      +|.+.+++....  .|+..............                   .+.......+..+...+...+|.+.+.+.+
T Consensus       105 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al  163 (323)
T d1fcha_         105 QACEILRDWLRY--TPAYAHLVTPAEEGAGG-------------------AGLGPSKRILGSLLSDSLFLEVKELFLAAV  163 (323)
T ss_dssp             HHHHHHHHHHHT--STTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhHHHh--ccchHHHHHhhhhhhhh-------------------cccccchhhHHHHHHhhHHHHHHHHHHHHH
Confidence            776666666543  22211110000000000                   000001111122333445556666654433


Q ss_pred             C----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC
Q 036290          612 N----SNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS  686 (796)
Q Consensus       612 ~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~  686 (796)
                      .    ..+...+..+...+...|++++|+..+++...  ..| +...|..+...+...|++++|.+.|+++.+   +.|+
T Consensus       164 ~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~  238 (323)
T d1fcha_         164 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS--VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE---LQPG  238 (323)
T ss_dssp             HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTT
T ss_pred             HHhhcccccccchhhHHHHHHHHHHhhhhcccccccc--cccccccchhhhhhcccccccchhHHHHHHHHHH---Hhhc
Confidence            2    13566777788888888888888888888877  456 566777888888888999999998888873   4566


Q ss_pred             -chHHHHHHHHHHhcCChHHHHHHHHhC-CCC------------CCHHHHHHHHHHHHhcCChHHHHHHH
Q 036290          687 -PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQ------------PSPTVYRSLLSGCRIHGNKELGEWAS  742 (796)
Q Consensus       687 -~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~------------p~~~~~~~l~~~~~~~g~~~~A~~~~  742 (796)
                       +..+..++.+|.+.|++++|++.|++. ...            .....|..+-.++...|+.+.+....
T Consensus       239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~~  308 (323)
T d1fcha_         239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD  308 (323)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence             677888888888999999998888876 111            12245666666766667666554443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.91  E-value=7.5e-08  Score=94.60  Aligned_cols=188  Identities=11%  Similarity=0.058  Sum_probs=150.9

Q ss_pred             CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C-C-hhHHHHHHHHHHhcCChHHHHHHH
Q 036290          563 GAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS-N-D-VIVYNTLIMAYAHHGLVSEAMEIF  639 (796)
Q Consensus       563 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~-~~~~~~li~~~~~~g~~~~A~~~~  639 (796)
                      +..+.+..+++...+...+.+...+...+..+.+.|+.+.|..+|+..+.. | + ...|...+..+.+.|+.+.|.++|
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            345778888888887655556778888899999999999999999777664 2 3 447899999999999999999999


Q ss_pred             HHHHHCCCCC-CHHHHHHHHHH-HhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC---
Q 036290          640 DKMKLANLQP-SQATFVSVMSA-CSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM---  713 (796)
Q Consensus       640 ~~m~~~g~~p-~~~t~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---  713 (796)
                      +++.+.  .| +...|...... +...|+.+.|..+|+.+...   .|+ +..|...++.+.+.|+.++|..+|++.   
T Consensus       158 ~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~---~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~  232 (308)
T d2onda1         158 KKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             HHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             HHHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            999884  34 44444443332 34568999999999999954   344 788999999999999999999999987   


Q ss_pred             -CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcc
Q 036290          714 -PFQPS--PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAA  755 (796)
Q Consensus       714 -~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  755 (796)
                       +..|+  ...|...+.--..+|+.+.+..+.+++.+..|++...
T Consensus       233 ~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~~  277 (308)
T d2onda1         233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG  277 (308)
T ss_dssp             SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred             CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccccc
Confidence             33443  3578888888889999999999999999999877543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=7.3e-08  Score=92.12  Aligned_cols=199  Identities=10%  Similarity=-0.074  Sum_probs=131.9

Q ss_pred             HHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHh
Q 036290          551 ILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAH  628 (796)
Q Consensus       551 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~  628 (796)
                      ++..+-..+.+.|+++.|.+.|+...+..+. ++.++..+..+|.+.|++++|++.|++.+..  .+...+..+...|..
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~  117 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY  117 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence            4444556677777777777777777776554 6677888888888889999888888666653  366778888889999


Q ss_pred             cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHhcCChHHHH
Q 036290          629 HGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSRNGYLEDAK  707 (796)
Q Consensus       629 ~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~  707 (796)
                      .|++++|.+.|++..+  ..| +......+..++.+.+..+.+..+.....   ...++...+. ++..+..........
T Consensus       118 ~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~  191 (259)
T d1xnfa_         118 GGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE---KSDKEQWGWN-IVEFYLGNISEQTLM  191 (259)
T ss_dssp             TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH---HSCCCSTHHH-HHHHHTTSSCHHHHH
T ss_pred             HhhHHHHHHHHHHHHh--hccccHHHHHHHHHHHHHhhhHHHHHHHHHHhh---ccchhhhhhh-HHHHHHHHHHHHHHH
Confidence            9999999999999988  455 44444444445556666665555555554   2233333332 233332222222222


Q ss_pred             HHH-HhCC----CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcce
Q 036290          708 HVI-EIMP----FQPS-PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAH  756 (796)
Q Consensus       708 ~~~-~~~~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  756 (796)
                      ... ....    ..|+ ..+|..+...+...|++++|...+++++..+|++...|
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  246 (259)
T d1xnfa_         192 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH  246 (259)
T ss_dssp             HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred             HHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence            222 1111    2232 24677788899999999999999999999999886544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.2e-07  Score=93.17  Aligned_cols=223  Identities=10%  Similarity=0.046  Sum_probs=159.9

Q ss_pred             hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccC-chHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 036290          515 ASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDE-YILGTILNSCAAIG-AYQRTKSIHPFVIKLGFNTEVYVASAVID  592 (796)
Q Consensus       515 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~  592 (796)
                      ..|+.+...+.+.+.+++|+++++++.+.  .|+. ..|+....++...| ++++|...++...+.... +..+|..+..
T Consensus        44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~  120 (315)
T d2h6fa1          44 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV  120 (315)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhH
Confidence            34566666777888899999999998876  4544 45566666666665 588999999988887766 7788888889


Q ss_pred             HHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC----
Q 036290          593 AYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKG----  665 (796)
Q Consensus       593 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g----  665 (796)
                      .+.+.|++++|++.+.+.+..  .+...|..+...+...|++++|++.++++.+  +.| +...|+.+...+.+.+    
T Consensus       121 ~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~--~~p~n~~a~~~r~~~l~~~~~~~~  198 (315)
T d2h6fa1         121 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYND  198 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HCCccHHHHHHHHHHHHHccccch
Confidence            999999999999999777664  4788999999999999999999999999999  667 5666776655544433    


Q ss_pred             --CHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhc--CChH
Q 036290          666 --LVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM----PFQPSPTVYRSLLSGCRIH--GNKE  736 (796)
Q Consensus       666 --~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~--g~~~  736 (796)
                        .+++|++.+..+.   ...|+ ...|..+...+... ..+++.+.++..    +...+...+..++..+...  ++.+
T Consensus       199 ~~~~~~ai~~~~~al---~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~  274 (315)
T d2h6fa1         199 RAVLEREVQYTLEMI---KLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCD  274 (315)
T ss_dssp             HHHHHHHHHHHHHHH---HHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred             hhhhHHhHHHHHHHH---HhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHH
Confidence              3688888888887   44665 66677676665544 456666666555    2223455666666665432  4444


Q ss_pred             HHHHHHHHHH
Q 036290          737 LGEWASEKLL  746 (796)
Q Consensus       737 ~A~~~~~~~~  746 (796)
                      .+...+++++
T Consensus       275 ~~~~~~~ka~  284 (315)
T d2h6fa1         275 NKEDILNKAL  284 (315)
T ss_dssp             SHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4555444443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.82  E-value=3.2e-09  Score=106.29  Aligned_cols=228  Identities=5%  Similarity=-0.145  Sum_probs=163.5

Q ss_pred             HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC--chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 036290          526 HQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIG--AYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGA  603 (796)
Q Consensus       526 ~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  603 (796)
                      ..|++++|+..++...+.. +-+...+..+..++...+  +++.+...+..+.+.........+......+...+..++|
T Consensus        85 ~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A  163 (334)
T d1dcea1          85 SAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEE  163 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHH
Confidence            4455677888888876652 334455555555554444  5778888888887765553333334455677788999999


Q ss_pred             HHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhc
Q 036290          604 RMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQY  681 (796)
Q Consensus       604 ~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~  681 (796)
                      +..++..+..  .+...|+.+...+...|++++|...+++..+  +.|+..   .+...+...+..+++...+...... 
T Consensus       164 l~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~-  237 (334)
T d1dcea1         164 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLLKEL---ELVQNAFFTDPNDQSAWFYHRWLLG-  237 (334)
T ss_dssp             HHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHHHHH---HHHHHHHHHCSSCSHHHHHHHHHHS-
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH--hHHHHH---HHHHHHHHhcchhHHHHHHHHHHHh-
Confidence            9999777776  3788899999999999998888776665554  333222   2223345556667777777777622 


Q ss_pred             CCCCCchHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEe
Q 036290          682 GMQPSPDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLL  759 (796)
Q Consensus       682 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  759 (796)
                       -.++...+..++..+...|+..+|.+.+.+. ...| +..+|..++.++...|+.++|.+.++++++++|.+..+|..|
T Consensus       238 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L  316 (334)
T d1dcea1         238 -RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  316 (334)
T ss_dssp             -CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             -CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHH
Confidence             2333666677888888899999999999887 4555 346788889999999999999999999999999988888777


Q ss_pred             cC
Q 036290          760 SK  761 (796)
Q Consensus       760 ~~  761 (796)
                      ++
T Consensus       317 ~~  318 (334)
T d1dcea1         317 RS  318 (334)
T ss_dssp             HH
T ss_pred             HH
Confidence            66

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=2.3e-08  Score=98.39  Aligned_cols=200  Identities=10%  Similarity=-0.031  Sum_probs=162.7

Q ss_pred             HHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhccCCC--CChhHHHHHHHHH
Q 036290          550 YILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCG-DIKGARMAFDQSFNS--NDVIVYNTLIMAY  626 (796)
Q Consensus       550 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~--~~~~~~~~li~~~  626 (796)
                      ..++.+-..+.+.+..++|.++++.+++.++. +...|+....++...| ++++|+..++..+..  .+..+|..+...+
T Consensus        44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~  122 (315)
T d2h6fa1          44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV  122 (315)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence            34455555677788999999999999998766 6778888888888876 589999999776553  4888999999999


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCC--
Q 036290          627 AHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGY--  702 (796)
Q Consensus       627 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~--  702 (796)
                      ...|++++|++.++++.+  +.| +...|..+...+...|++++|++.++.+.   .+.|+ ...|+.+..++.+.|.  
T Consensus       123 ~~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al---~~~p~n~~a~~~r~~~l~~~~~~~  197 (315)
T d2h6fa1         123 EWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLL---KEDVRNNSVWNQRYFVISNTTGYN  197 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCSC
T ss_pred             HhhccHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHH---HHCCccHHHHHHHHHHHHHccccc
Confidence            999999999999999999  677 77889999999999999999999999998   45676 7778888777777665  


Q ss_pred             ----hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcce
Q 036290          703 ----LEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAH  756 (796)
Q Consensus       703 ----~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  756 (796)
                          +++|++.+.++ ...| +...|..+...+.. ....++.+.++++++++|+....+
T Consensus       198 ~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~  256 (315)
T d2h6fa1         198 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPY  256 (315)
T ss_dssp             SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHH
T ss_pred             hhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHH
Confidence                57888888776 4555 56778877766544 456889999999999999866544

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=4.3e-07  Score=91.17  Aligned_cols=95  Identities=12%  Similarity=-0.041  Sum_probs=48.1

Q ss_pred             HHHHHHhccCCHHHHHHHHHHhHhhcCCCCC--chHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC-HHHHHHH
Q 036290          656 SVMSACSHKGLVDKGCLLFKSMDSQYGMQPS--PDCYGCLVDMLSRNGYLEDAKHVIEIM-------PFQPS-PTVYRSL  725 (796)
Q Consensus       656 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l  725 (796)
                      .+...+...|++++|...++.......-.+.  ...+..+..++...|++++|.+.+++.       +..|+ ..++..+
T Consensus       218 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  297 (366)
T d1hz4a_         218 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL  297 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHH
Confidence            3344455556666666666555422110011  223334555566666666666665554       22222 2345555


Q ss_pred             HHHHHhcCChHHHHHHHHHHHccCC
Q 036290          726 LSGCRIHGNKELGEWASEKLLLLLP  750 (796)
Q Consensus       726 ~~~~~~~g~~~~A~~~~~~~~~~~p  750 (796)
                      ...+...|++++|.+.+++++++.+
T Consensus       298 a~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         298 NQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            5556666666666666666665543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=2.7e-06  Score=85.07  Aligned_cols=94  Identities=11%  Similarity=0.119  Sum_probs=43.5

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHhh---cCCCCC-chHHHH
Q 036290          620 NTLIMAYAHHGLVSEAMEIFDKMKLANLQP---SQATFVSVMSACSHKGLVDKGCLLFKSMDSQ---YGMQPS-PDCYGC  692 (796)
Q Consensus       620 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~p~-~~~~~~  692 (796)
                      ..+...+...|++++|...+++..+.....   ....+..+..++...|++++|...++++...   .+..|+ ...+..
T Consensus       217 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  296 (366)
T d1hz4a_         217 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL  296 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHH
Confidence            333444445555555555555444321111   1122333444555555555555555544321   133333 344555


Q ss_pred             HHHHHHhcCChHHHHHHHHhC
Q 036290          693 LVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       693 l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      +..+|.+.|++++|.+.+++.
T Consensus       297 la~~~~~~g~~~~A~~~l~~A  317 (366)
T d1hz4a_         297 LNQLYWQAGRKSDAQRVLLDA  317 (366)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHH
Confidence            555555556655555555543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.59  E-value=2.5e-06  Score=83.36  Aligned_cols=181  Identities=17%  Similarity=0.137  Sum_probs=91.2

Q ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 036290          531 HEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGARMAFDQS  610 (796)
Q Consensus       531 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~  610 (796)
                      ++|..+|++..+...+-+...+...+......|+.+.+..+++.+.+........+|...+..+.+.|+.+.|.++|+..
T Consensus        81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a  160 (308)
T d2onda1          81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA  160 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            44444444444332222333344444444455555555555555544333323334555555555555555555555444


Q ss_pred             CCC-C-ChhHHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC
Q 036290          611 FNS-N-DVIVYNTLIMA-YAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS  686 (796)
Q Consensus       611 ~~~-~-~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~  686 (796)
                      +.. | +...|...... +...|+.+.|..+|+.+.+.  .| +...|...+..+.+.|+++.|..+|++..+..+..|+
T Consensus       161 l~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~  238 (308)
T d2onda1         161 REDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE  238 (308)
T ss_dssp             HTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred             HHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence            433 1 22233322222 22345666666666666653  33 4455666666666666666666666666544333433


Q ss_pred             --chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          687 --PDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       687 --~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                        ...|...+..-...|+.+.+.++.+++
T Consensus       239 ~~~~iw~~~~~fE~~~G~~~~~~~~~~r~  267 (308)
T d2onda1         239 KSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             GCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence              235555555555666666666666655

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=1.3e-06  Score=83.11  Aligned_cols=198  Identities=11%  Similarity=-0.063  Sum_probs=108.5

Q ss_pred             hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 036290          516 SWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYA  595 (796)
Q Consensus       516 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  595 (796)
                      +|..+...|.+.|++++|...|++..+.. +-+..+|..+-.++...|+++.|...|+.+.+.... +...+..+..+|.
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~  116 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALY  116 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHH
Confidence            34445555666666666666666665542 234455666666666666666666666666665443 4455666667777


Q ss_pred             hcCCHHHHHHHHhccCCC-C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----CCHHH
Q 036290          596 KCGDIKGARMAFDQSFNS-N-DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHK----GLVDK  669 (796)
Q Consensus       596 ~~g~~~~A~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----g~~~~  669 (796)
                      ..|++++|...++..+.. | +......+..++.+.+..+.+..+......  ..++...+.. +..+...    +..+.
T Consensus       117 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~  193 (259)
T d1xnfa_         117 YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--SDKEQWGWNI-VEFYLGNISEQTLMER  193 (259)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--SCCCSTHHHH-HHHHTTSSCHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc--cchhhhhhhH-HHHHHHHHHHHHHHHH
Confidence            777777777777554432 2 333333344444555555555555555554  2232222222 2222111    12222


Q ss_pred             HHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH
Q 036290          670 GCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPTV  721 (796)
Q Consensus       670 A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~  721 (796)
                      +...+....   ...|+ ..+|..+...|...|++++|.+.+++. ...|+...
T Consensus       194 ~~~~~~~~~---~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  244 (259)
T d1xnfa_         194 LKADATDNT---SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV  244 (259)
T ss_dssp             HHHHCCSHH---HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred             HHHHHHHhh---hcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH
Confidence            222222211   12233 456667888888899999999998877 56676533

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=2.7e-06  Score=76.04  Aligned_cols=85  Identities=15%  Similarity=-0.001  Sum_probs=63.6

Q ss_pred             HHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHH
Q 036290          591 IDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDK  669 (796)
Q Consensus       591 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~  669 (796)
                      ...+...|++++|++.| ..+..++...|..+...|...|++++|++.|++..+  +.| +...|..+..++.+.|++++
T Consensus        12 g~~~~~~~d~~~Al~~~-~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~   88 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAF-SAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDL   88 (192)
T ss_dssp             HHHHHHTTCHHHHHHHH-HTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHCCCHHHHHHHH-HhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHHH
Confidence            34456778888888888 445556777777788888888888888888888877  556 55667777777888888888


Q ss_pred             HHHHHHHhH
Q 036290          670 GCLLFKSMD  678 (796)
Q Consensus       670 A~~~~~~~~  678 (796)
                      |+..|++..
T Consensus        89 A~~~~~kAl   97 (192)
T d1hh8a_          89 AIKDLKEAL   97 (192)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888887765

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.46  E-value=6.6e-07  Score=88.91  Aligned_cols=210  Identities=9%  Similarity=-0.032  Sum_probs=142.0

Q ss_pred             CHhhHHHHHHHHHHcC--ChhHHHHHHHHHHHcCCCCCHHHHHHH-HHHHhccCchHHHHHHHHHHHHhCCCCchhHHHH
Q 036290          513 DMASWGAMMSALVHQG--HNHEAVTIFHSLVEAGEKPDEYILGTI-LNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASA  589 (796)
Q Consensus       513 ~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  589 (796)
                      +...|..+..++...+  ++++|...+.+..+.. +++...+... ...+...+..+.|...++.+.+..+. +...+..
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~  183 (334)
T d1dcea1         106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHY  183 (334)
T ss_dssp             CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHH
T ss_pred             cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHH
Confidence            4445555555555544  4677888888776653 3344444333 34556677888888888877776655 6777888


Q ss_pred             HHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHH
Q 036290          590 VIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVD  668 (796)
Q Consensus       590 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~  668 (796)
                      +..++.+.|++++|...+...+.. ... .......+...+..+++...+......  .| +...+..+...+...|+++
T Consensus       184 l~~~~~~~~~~~~A~~~~~~~~~~-~~~-~~~~~~~~~~l~~~~~a~~~~~~~l~~--~~~~~~~~~~l~~~~~~~~~~~  259 (334)
T d1dcea1         184 RSCLLPQLHPQPDSGPQGRLPENV-LLK-ELELVQNAFFTDPNDQSAWFYHRWLLG--RAEPLFRCELSVEKSTVLQSEL  259 (334)
T ss_dssp             HHHHHHHHSCCCCSSSCCSSCHHH-HHH-HHHHHHHHHHHCSSCSHHHHHHHHHHS--CCCCSSSCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHhHHh-HHH-HHHHHHHHHHhcchhHHHHHHHHHHHh--CcchhhHHHHHHHHHHHHhhHH
Confidence            888888888887776555222211 111 122334455667778888888888773  34 4555666667777888999


Q ss_pred             HHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHh
Q 036290          669 KGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP-TVYRSLLSGCRI  731 (796)
Q Consensus       669 ~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~  731 (796)
                      +|...+.+..   ...|+ ...+..++.++...|++++|.+.+++. .+.|+. ..|+.|...+..
T Consensus       260 ~a~~~~~~~~---~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~  322 (334)
T d1dcea1         260 ESCKELQELE---PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL  322 (334)
T ss_dssp             HHHHHHHHHC---TTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH---hhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence            9999998877   45665 778888999999999999999999988 566754 456666665544

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=1.5e-07  Score=76.61  Aligned_cols=99  Identities=13%  Similarity=0.036  Sum_probs=78.0

Q ss_pred             HHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 036290          658 MSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGN  734 (796)
Q Consensus       658 l~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~  734 (796)
                      ...+...|++++|+..|+++.+   ..|+ +..|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|+
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIK---LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHh---cCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence            4556778888888888888873   3565 777888888888888888888888877 3333 66788888888888899


Q ss_pred             hHHHHHHHHHHHccCCCCCcceEEe
Q 036290          735 KELGEWASEKLLLLLPKNDAAHVLL  759 (796)
Q Consensus       735 ~~~A~~~~~~~~~~~p~~~~~~~~l  759 (796)
                      +++|+..++++++++|+++.++..+
T Consensus        87 ~~~A~~~~~~a~~~~p~~~~~~~~l  111 (117)
T d1elwa_          87 FEEAKRTYEEGLKHEANNPQLKEGL  111 (117)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            9999999999999998887766544

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=3.4e-06  Score=75.43  Aligned_cols=125  Identities=7%  Similarity=-0.095  Sum_probs=105.3

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcC
Q 036290          623 IMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNG  701 (796)
Q Consensus       623 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g  701 (796)
                      ...+...|+++.|++.|+++    .+|+..+|..+..++...|++++|++.|++..   .+.|+ +..|..+..++.+.|
T Consensus        12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl---~ldp~~~~a~~~~g~~~~~~g   84 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSI---NRDKHLAVAYFQRGMLYYQTE   84 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHH---HHhhhhhhhHHHHHHHHHhhc
Confidence            55678899999999999875    35678888899999999999999999999998   45777 888999999999999


Q ss_pred             ChHHHHHHHHhC--CCC---------------CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCc
Q 036290          702 YLEDAKHVIEIM--PFQ---------------PS-PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDA  754 (796)
Q Consensus       702 ~~~~A~~~~~~~--~~~---------------p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  754 (796)
                      ++++|.+.|++.  ..+               ++ ..++..+..++.+.|++++|.+.+++++++.|+...
T Consensus        85 ~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~  155 (192)
T d1hh8a_          85 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH  155 (192)
T ss_dssp             CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred             cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcch
Confidence            999999998875  111               11 245677888899999999999999999999987543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.35  E-value=6.4e-07  Score=81.44  Aligned_cols=95  Identities=5%  Similarity=-0.112  Sum_probs=65.2

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHH
Q 036290          614 NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYG  691 (796)
Q Consensus       614 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~  691 (796)
                      |+...+......|.+.|++++|+..|++..+  +.| +...|..+..+|.+.|++++|+..|+.+.   .+.|+ +.+|.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~--~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~~   76 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHF   76 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---HhCCCcHHHHH
Confidence            4445555666677777777777777777776  445 55556667777777777777777777776   55665 66667


Q ss_pred             HHHHHHHhcCChHHHHHHHHhC
Q 036290          692 CLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       692 ~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      .++.+|.+.|++++|...++++
T Consensus        77 ~lg~~~~~l~~~~~A~~~~~~a   98 (201)
T d2c2la1          77 FLGQCQLEMESYDEAIANLQRA   98 (201)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHH
Confidence            7777777777777777777665

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=5.4e-07  Score=73.37  Aligned_cols=102  Identities=18%  Similarity=0.020  Sum_probs=80.9

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCCCH---HHHHHHH
Q 036290          655 VSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGY---LEDAKHVIEIM-PFQPSP---TVYRSLL  726 (796)
Q Consensus       655 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~~---~~~~~l~  726 (796)
                      ..+++.+...+++++|.+.|++..   ...|+ +.++..+..++.+.++   +++|+++++++ ...|++   .+|..+.
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL---~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg   79 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEK---AAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA   79 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH---HHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence            456777888889999999999888   34565 7888888888887554   45688889887 444443   3678889


Q ss_pred             HHHHhcCChHHHHHHHHHHHccCCCCCcceEEe
Q 036290          727 SGCRIHGNKELGEWASEKLLLLLPKNDAAHVLL  759 (796)
Q Consensus       727 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  759 (796)
                      .+|.+.|++++|++.++++++++|++..+..++
T Consensus        80 ~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~  112 (122)
T d1nzna_          80 VGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE  112 (122)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            999999999999999999999999998776554

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.26  E-value=3.4e-05  Score=74.21  Aligned_cols=206  Identities=8%  Similarity=-0.028  Sum_probs=95.1

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 036290          518 GAMMSALVHQGHNHEAVTIFHSLVEA----GEKPD-EYILGTILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVID  592 (796)
Q Consensus       518 ~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  592 (796)
                      ......|...+++++|.+.|.+..+.    +-.++ ..+|..+..+|.+.|+++.|.+.++...+.              
T Consensus        41 ~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~--------------  106 (290)
T d1qqea_          41 VQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI--------------  106 (290)
T ss_dssp             HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHH--------------
Confidence            33455666777777777777766432    11111 234555555666666666666655544331              


Q ss_pred             HHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHh-cCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCC
Q 036290          593 AYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAH-HGLVSEAMEIFDKMKLA----NLQP-SQATFVSVMSACSHKGL  666 (796)
Q Consensus       593 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~  666 (796)
                       +...|+...+.            ..+..+...|.. .|++++|.+.+++..+.    +..+ -..++..+...+...|+
T Consensus       107 -~~~~~~~~~~~------------~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~  173 (290)
T d1qqea_         107 -FTHRGQFRRGA------------NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ  173 (290)
T ss_dssp             -HHHTTCHHHHH------------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             -hhhcccchhHH------------HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcCh
Confidence             11112222211            122333333422 35555555555554331    1111 12234555556666666


Q ss_pred             HHHHHHHHHHhHhhcCCCCC-----chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC------HHHHHHHHHHHHhc--
Q 036290          667 VDKGCLLFKSMDSQYGMQPS-----PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS------PTVYRSLLSGCRIH--  732 (796)
Q Consensus       667 ~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~------~~~~~~l~~~~~~~--  732 (796)
                      +++|...|+++.......+.     ...+...+.++...|+++.|...+++. ...|.      ......++.++...  
T Consensus       174 y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~  253 (290)
T d1qqea_         174 YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDS  253 (290)
T ss_dssp             HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCH
Confidence            66666666665532111111     011233444455566666666666665 22221      12233444443331  


Q ss_pred             CChHHHHHHHHHHHccCC
Q 036290          733 GNKELGEWASEKLLLLLP  750 (796)
Q Consensus       733 g~~~~A~~~~~~~~~~~p  750 (796)
                      +.+.+|...++++.+++|
T Consensus       254 e~~~eai~~y~~~~~lD~  271 (290)
T d1qqea_         254 EQLSEHCKEFDNFMRLDK  271 (290)
T ss_dssp             TTHHHHHHHHTTSSCCCH
T ss_pred             HHHHHHHHHHHHHhhcCH
Confidence            235555555555555544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1.4e-06  Score=75.47  Aligned_cols=95  Identities=12%  Similarity=-0.003  Sum_probs=64.1

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHH
Q 036290          619 YNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDM  696 (796)
Q Consensus       619 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~  696 (796)
                      +......|.+.|++++|+..|++..+  +.| +...|..+..+|...|++++|+..|+++.   .+.|+ ...|..++.+
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal---~~~p~~~~a~~~~g~~   87 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAI---ELDKKYIKGYYRRAAS   87 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccc--cchhhhhhhhhhHHHHHhccccchHHHHHHHHH---HHcccchHHHHHHHHH
Confidence            44445566777777777777777777  455 55556666677777777777777777776   33455 5667777777


Q ss_pred             HHhcCChHHHHHHHHhC-CCCCC
Q 036290          697 LSRNGYLEDAKHVIEIM-PFQPS  718 (796)
Q Consensus       697 ~~~~g~~~~A~~~~~~~-~~~p~  718 (796)
                      +...|++++|.+.+++. ...|+
T Consensus        88 ~~~~g~~~eA~~~~~~a~~~~p~  110 (159)
T d1a17a_          88 NMALGKFRAALRDYETVVKVKPH  110 (159)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCC
Confidence            77777777777777766 33443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1.2e-05  Score=64.86  Aligned_cols=93  Identities=16%  Similarity=0.128  Sum_probs=71.1

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHh
Q 036290          622 LIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSR  699 (796)
Q Consensus       622 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~  699 (796)
                      -...+...|++++|+..|++..+  ..| +...|..+..++...|++++|+..++.+.+   +.|+ +..|..++.++..
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~g~~~~~   83 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD---LKPDWGKGYSRKAAALEF   83 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHh--cCCcchhhhhcccccccccccccccchhhhhHHH---hccchhhHHHHHHHHHHH
Confidence            45567778888888888888887  556 666677788888888888888888888873   3454 7778888888888


Q ss_pred             cCChHHHHHHHHhC-CCCCCH
Q 036290          700 NGYLEDAKHVIEIM-PFQPSP  719 (796)
Q Consensus       700 ~g~~~~A~~~~~~~-~~~p~~  719 (796)
                      .|++++|+..+++. ...|+.
T Consensus        84 ~~~~~~A~~~~~~a~~~~p~~  104 (117)
T d1elwa_          84 LNRFEEAKRTYEEGLKHEANN  104 (117)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTC
T ss_pred             ccCHHHHHHHHHHHHHhCCCC
Confidence            88888888888877 556654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.2e-05  Score=69.28  Aligned_cols=97  Identities=11%  Similarity=0.021  Sum_probs=51.6

Q ss_pred             HHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChH
Q 036290          660 ACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKE  736 (796)
Q Consensus       660 ~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~  736 (796)
                      .|.+.|++++|+..|+++.+   +.|+ ...|..+..+|...|++++|.+.++++ ...| +..+|..++.++...|+++
T Consensus        19 ~~~~~~~y~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~   95 (159)
T d1a17a_          19 DYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR   95 (159)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcCCHHHHHHHhhhccc---cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence            44455555555555555552   2344 455555555555555555555555554 3333 2345555555555555555


Q ss_pred             HHHHHHHHHHccCCCCCcceEEe
Q 036290          737 LGEWASEKLLLLLPKNDAAHVLL  759 (796)
Q Consensus       737 ~A~~~~~~~~~~~p~~~~~~~~l  759 (796)
                      +|...++++++++|+++.++..+
T Consensus        96 eA~~~~~~a~~~~p~~~~~~~~l  118 (159)
T d1a17a_          96 AALRDYETVVKVKPHDKDAKMKY  118 (159)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHH
Confidence            55555555555555555554443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.08  E-value=1.3e-05  Score=72.34  Aligned_cols=127  Identities=9%  Similarity=-0.031  Sum_probs=93.3

Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 036290          582 TEVYVASAVIDAYAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVM  658 (796)
Q Consensus       582 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll  658 (796)
                      |+...+......|.+.|++++|+..|.+.+..  .+...|..+..+|.+.|++++|+..|++..+  +.| +..+|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHHH
Confidence            56666777788899999999999999776653  4778888899999999999999999999887  677 566788888


Q ss_pred             HHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          659 SACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       659 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      .+|...|++++|+..|+++..   +.|+ ...+...+..+.+.+....+.......
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~---l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  132 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYS---LAKEQRLNFGDDIPSALRIAKKKRWNSIEERR  132 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH---HHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            899999999999999988773   3343 223333444444444444444444443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.07  E-value=1.2e-05  Score=77.58  Aligned_cols=166  Identities=8%  Similarity=-0.034  Sum_probs=113.4

Q ss_pred             HHHHHHhcCCHHHHHHHHhccCCC----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CC--CHHHHHH
Q 036290          590 VIDAYAKCGDIKGARMAFDQSFNS----N----DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANL---QP--SQATFVS  656 (796)
Q Consensus       590 li~~~~~~g~~~~A~~~~~~~~~~----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~t~~~  656 (796)
                      ....|-..|++++|.+.|.+...-    +    -..+|..+...|.+.|++++|.+.+++..+...   .+  ...++..
T Consensus        43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  122 (290)
T d1qqea_          43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (290)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence            456677888888888887555431    1    235778888899999999999999987765211   11  1344556


Q ss_pred             HHHHHh-ccCCHHHHHHHHHHhHhhc---CCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-------H-HHH
Q 036290          657 VMSACS-HKGLVDKGCLLFKSMDSQY---GMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPS-------P-TVY  722 (796)
Q Consensus       657 ll~~~~-~~g~~~~A~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-------~-~~~  722 (796)
                      +...|. ..|++++|++.+++...-.   +..+. ..++..++..+...|++++|.+.+++. ...|+       . ..+
T Consensus       123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~  202 (290)
T d1qqea_         123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF  202 (290)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence            666664 4699999999999876321   22222 456788999999999999999999987 11111       1 234


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHccCCCCCcc
Q 036290          723 RSLLSGCRIHGNKELGEWASEKLLLLLPKNDAA  755 (796)
Q Consensus       723 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  755 (796)
                      ...+.++...|+++.|.+.++++.+.+|..+..
T Consensus       203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~s  235 (290)
T d1qqea_         203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADS  235 (290)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCCccch
Confidence            455666778899999999999999999975544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=7.2e-06  Score=71.55  Aligned_cols=122  Identities=14%  Similarity=0.065  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHH
Q 036290          618 VYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDML  697 (796)
Q Consensus       618 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~  697 (796)
                      .+......+.+.|++++|+..|.+..+.  .|....+         .   +.-......+.        ..+|..+..+|
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~~~---------~---~~~~~~~~~~~--------~~~~~nla~~y   72 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF---------S---NEEAQKAQALR--------LASHLNLAMCH   72 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC---------C---SHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhcccc---------c---hHHHhhhchhH--------HHHHHHHHHHH
Confidence            3445556777788888888888877762  2211000         0   00000000000        12344555666


Q ss_pred             HhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290          698 SRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK  761 (796)
Q Consensus       698 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  761 (796)
                      .+.|++++|++.+++. ...| +...|..+..++...|++++|...++++++++|+++.+...|+.
T Consensus        73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~  138 (170)
T d1p5qa1          73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV  138 (170)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            6666666666666555 3334 44556666666666666666666666666666666665555444

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.92  E-value=1.8e-05  Score=63.29  Aligned_cols=85  Identities=9%  Similarity=0.049  Sum_probs=45.2

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhc
Q 036290          623 IMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRN  700 (796)
Q Consensus       623 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~  700 (796)
                      ...+.+.|++++|...|++..+  ..| +...|..+..++.+.|++++|+..++++.   .+.|+ ...+..++.+|...
T Consensus        23 g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al---~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          23 GLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHAR---MLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhccccccc---ccccccccchHHHHHHHHHC
Confidence            3445555555555555555555  334 34445555555555555555555555555   23344 45555555555555


Q ss_pred             CChHHHHHHHHh
Q 036290          701 GYLEDAKHVIEI  712 (796)
Q Consensus       701 g~~~~A~~~~~~  712 (796)
                      |++++|.+.+++
T Consensus        98 g~~~~A~~~l~~  109 (112)
T d1hxia_          98 HNANAALASLRA  109 (112)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            555555555543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.79  E-value=8.5e-05  Score=63.12  Aligned_cols=123  Identities=11%  Similarity=-0.065  Sum_probs=85.2

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHH
Q 036290          617 IVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDM  696 (796)
Q Consensus       617 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~  696 (796)
                      ..+..-...+.+.|++++|+..|++..+.  -|.....           .-.........+        ...+|..+..+
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~~~-----------~~~~~~~~~~~~--------~~~~~~Nla~~   76 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEW-----------DDQILLDKKKNI--------EISCNLNLATC   76 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTC-----------CCHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchhhh-----------hhHHHHHhhhhH--------HHHHHhhHHHH
Confidence            34555566777788888888888877762  2211000           000000000000        12367778899


Q ss_pred             HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEec
Q 036290          697 LSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLS  760 (796)
Q Consensus       697 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~  760 (796)
                      |.+.|++++|++.+++. ...| +..+|..++.++...|++++|...++++++++|+++.+...+.
T Consensus        77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~  142 (153)
T d2fbna1          77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE  142 (153)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            99999999999999887 4455 6689999999999999999999999999999999988765543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.77  E-value=3.7e-05  Score=61.32  Aligned_cols=88  Identities=13%  Similarity=0.029  Sum_probs=77.0

Q ss_pred             HHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 036290          656 SVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIH  732 (796)
Q Consensus       656 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~  732 (796)
                      .+...+.+.|++++|+..|+++..   ..|+ +..|..++.++.+.|++++|+..+++. ...| +...|..+..++...
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcc---cccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            345677889999999999999984   4676 889999999999999999999999997 5555 568899999999999


Q ss_pred             CChHHHHHHHHHHH
Q 036290          733 GNKELGEWASEKLL  746 (796)
Q Consensus       733 g~~~~A~~~~~~~~  746 (796)
                      |+.++|.+.+++.+
T Consensus        98 g~~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999999875

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=4e-05  Score=61.93  Aligned_cols=100  Identities=14%  Similarity=0.056  Sum_probs=75.2

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC---CHHHHHHHHHHhHhhcCCCCC-chHHHHHH
Q 036290          620 NTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKG---LVDKGCLLFKSMDSQYGMQPS-PDCYGCLV  694 (796)
Q Consensus       620 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~  694 (796)
                      ..++..+...+++++|.+.|++...  ..| +..++..+..++.+.+   ++++|+.+++++... ...|+ ..++..++
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~-~~~~~~~~~~~~Lg   79 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-GSKEEQRDYVFYLA   79 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc-cCCchHHHHHHHHH
Confidence            4567778888899999999999988  556 6677778888887654   455788899888732 22222 34677899


Q ss_pred             HHHHhcCChHHHHHHHHhC-CCCCCHHHH
Q 036290          695 DMLSRNGYLEDAKHVIEIM-PFQPSPTVY  722 (796)
Q Consensus       695 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~~  722 (796)
                      .+|.+.|++++|++.++++ ...|+..-.
T Consensus        80 ~~y~~~g~~~~A~~~~~~aL~~~P~~~~A  108 (122)
T d1nzna_          80 VGNYRLKEYEKALKYVRGLLQTEPQNNQA  108 (122)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhCcCCHHH
Confidence            9999999999999999988 667765433

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.74  E-value=0.0026  Score=60.90  Aligned_cols=211  Identities=9%  Similarity=0.071  Sum_probs=95.3

Q ss_pred             HHHHHHHHccCChhHHHHHhcccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChh
Q 036290           83 NNLIAMYSKCGYFGWGLRVFDEMAERNLVSWTLIVSAAIQNGEFDMGLKMYVDMKTNGFMPNEFAVGSVMKVCVSMGASE  162 (796)
Q Consensus        83 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~  162 (796)
                      ..+..-|.+.|.++.|..+|..+     .-|..++..+.+.+++..|.+++.+..      +..+|..+..+|.+.....
T Consensus        18 ~~i~~~c~~~~lye~A~~lY~~~-----~d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~~e~~   86 (336)
T d1b89a_          18 QQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFR   86 (336)
T ss_dssp             -----------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhC-----CCHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHhCcHHH
Confidence            34445555555555555555533     234445555555555555555554331      3334555555554443332


Q ss_pred             HHHHHHHHHHHhcCCCChhHhhHHHHHHHccCChhHHHHHhhccC---CCCceeHHHHHHHHHhCCCchHHHHHHHHHHH
Q 036290          163 FGYSIHCFALKIRIEKNPFVGCSVLNFYAKLGDVAAAERVFYSIS---SDDVGCWNAMIGGYAHCGYGFEALNVVSSMLF  239 (796)
Q Consensus       163 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  239 (796)
                      .+     .+...+...++.....++..|-..|.+++...+++...   ..+...++.++..|++.+ .++..+.++..  
T Consensus        87 la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~--  158 (336)
T d1b89a_          87 LA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELF--  158 (336)
T ss_dssp             HH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHH--
T ss_pred             HH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhc--
Confidence            22     11122223344444556666777777777777776532   234445666777776653 23333333322  


Q ss_pred             CCCCCCHhhHHHHHHhhccCCCchHHHHHHHHHHHhcCCCChHHHHHHHHhhhcCCCHHHHHHHHhhcCCCCcchHHHHH
Q 036290          240 EGITMDKYTFINALQGCSLVADFDIGRQIHGLIIRSEVECSISIVNALIDMYIKSSGMDYAFKVFERMADKDVISWNTLF  319 (796)
Q Consensus       240 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li  319 (796)
                       +   +......+++.|-..+-+.                      .++-.|.+.|.++.|..+.-.-. +++......+
T Consensus       159 -s---~~y~~~k~~~~c~~~~l~~----------------------elv~Ly~~~~~~~~A~~~~i~~~-~~~~~~~~f~  211 (336)
T d1b89a_         159 -W---SRVNIPKVLRAAEQAHLWA----------------------ELVFLYDKYEEYDNAIITMMNHP-TDAWKEGQFK  211 (336)
T ss_dssp             -S---TTSCHHHHHHHHHTTTCHH----------------------HHHHHHHHTTCHHHHHHHHHHST-TTTCCHHHHH
T ss_pred             -c---ccCCHHHHHHHHHHcCChH----------------------HHHHHHHhcCCHHHHHHHHHHcc-hhhhhHHHHH
Confidence             1   1122233445554444433                      33444555555555554432211 1233344455


Q ss_pred             HHHHhCCCccHHHHHHHHHH
Q 036290          320 GGFSENKNPGQTASLFHKFI  339 (796)
Q Consensus       320 ~~~~~~~~~~~a~~l~~~m~  339 (796)
                      ..+.+..+++...++.....
T Consensus       212 e~~~k~~N~e~~~~~i~~yL  231 (336)
T d1b89a_         212 DIITKVANVELYYRAIQFYL  231 (336)
T ss_dssp             HHHHHCSSTHHHHHHHHHHH
T ss_pred             HHHHccCChHHHHHHHHHHH
Confidence            55566666655555554443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.73  E-value=0.0099  Score=55.27  Aligned_cols=224  Identities=9%  Similarity=-0.090  Sum_probs=118.7

Q ss_pred             hhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCchHHHHHHHHHHHHhCCCCchhHHHHH
Q 036290          515 ASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAA----IGAYQRTKSIHPFVIKLGFNTEVYVASAV  590 (796)
Q Consensus       515 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  590 (796)
                      ..+..+...+.+.+++++|++.|++..+.|   +...+..|-..+..    ..+...+...+......+.   ......+
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~---~~a~~~l   76 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY---SNGCHLL   76 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc---cchhhcc
Confidence            334444445555566666666666665554   22233233333332    3455566666655555442   2222233


Q ss_pred             HHHHHh----cCCHHHHHHHHhccCCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 036290          591 IDAYAK----CGDIKGARMAFDQSFNSNDVIVYNTLIMAYAH----HGLVSEAMEIFDKMKLANLQPSQATFVSVMSACS  662 (796)
Q Consensus       591 i~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~  662 (796)
                      ...+..    ..+.+.|...++.............+...+..    ......+...+......   .+...+..|...+.
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~  153 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLYD  153 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhhhc
Confidence            333222    34566666666555554444444444433332    23455566666655542   24445555555554


Q ss_pred             c----cCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh---
Q 036290          663 H----KGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSR----NGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRI---  731 (796)
Q Consensus       663 ~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~---  731 (796)
                      .    ..+...+..+++...+. |   ++.....+...|..    ..++++|..+|++....-++..+..|...|..   
T Consensus       154 ~~~~~~~~~~~~~~~~~~a~~~-g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g  229 (265)
T d1ouva_         154 AGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEG  229 (265)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS
T ss_pred             cCCCcccccccchhhhhccccc-c---ccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHcCCC
Confidence            3    44566666666666522 2   44555556655554    45788888888777333355666666666654   


Q ss_pred             -cCChHHHHHHHHHHHccCCC
Q 036290          732 -HGNKELGEWASEKLLLLLPK  751 (796)
Q Consensus       732 -~g~~~~A~~~~~~~~~~~p~  751 (796)
                       ..|.++|.+.++++.+..+.
T Consensus       230 ~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         230 VTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             SSCCSTTHHHHHHHHHHHTCH
T ss_pred             CccCHHHHHHHHHHHHHCcCH
Confidence             33777888888888776553

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.72  E-value=2.2e-05  Score=73.47  Aligned_cols=128  Identities=9%  Similarity=-0.050  Sum_probs=94.5

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCCh
Q 036290          626 YAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYL  703 (796)
Q Consensus       626 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~  703 (796)
                      ..+.|++++|+..+++..+  ..| |...+..+...++..|++++|.+.++...   ...|+ ...+..+..++...+..
T Consensus         6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~---~l~P~~~~~~~~l~~ll~a~~~~   80 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSI---KLFPEYLPGASQLRHLVKAAQAR   80 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHhcccc
Confidence            3467999999999999998  667 77889999999999999999999999998   45677 55555566666555555


Q ss_pred             HHHHHHHHhCC--CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEE
Q 036290          704 EDAKHVIEIMP--FQPSP-TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVL  758 (796)
Q Consensus       704 ~~A~~~~~~~~--~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  758 (796)
                      +++..-.....  ..|+. ..+......+...|+.++|...++++.+..|..+..+..
T Consensus        81 ~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~~  138 (264)
T d1zbpa1          81 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAND  138 (264)
T ss_dssp             HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETT
T ss_pred             HHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccccc
Confidence            55433322221  22332 333444566788999999999999999999998876543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=0.00016  Score=62.67  Aligned_cols=122  Identities=9%  Similarity=0.016  Sum_probs=72.1

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036290          585 YVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGL-VSEAMEIFDKMKLANLQPSQATFVSVMSACSH  663 (796)
Q Consensus       585 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~  663 (796)
                      ..+......+.+.|++++|+..|.+.+..            +-.... .+.-......+.       ..+|+.+..+|.+
T Consensus        14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~------------~~~~~~~~~~~~~~~~~~~-------~~~~~nla~~y~k   74 (170)
T d1p5qa1          14 TIVKERGTVYFKEGKYKQALLQYKKIVSW------------LEYESSFSNEEAQKAQALR-------LASHLNLAMCHLK   74 (170)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------TTTCCCCCSHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------hhhccccchHHHhhhchhH-------HHHHHHHHHHHHh
Confidence            34455667889999999999999554421            100000 001011111111       1245566667777


Q ss_pred             cCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 036290          664 KGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSG  728 (796)
Q Consensus       664 ~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~  728 (796)
                      .|++++|+..++...   .+.|+ +.++..++.+|...|++++|...|++. .+.| +..+...+..+
T Consensus        75 ~~~~~~A~~~~~~al---~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~  139 (170)
T d1p5qa1          75 LQAFSAAIESCNKAL---ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC  139 (170)
T ss_dssp             TTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             hhhcccccchhhhhh---hccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            777777777777777   33554 677777777777777777777777776 4455 33344444333

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.66  E-value=0.016  Score=55.22  Aligned_cols=134  Identities=8%  Similarity=-0.004  Sum_probs=53.1

Q ss_pred             CCcchHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCcchHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 036290          310 KDVISWNTLFGGFSENKNPGQTASLFHKFILSGSRPNHVTFSILLRQCGKLLDLDLGLQLQCLALHCGFLDEENVTSSLI  389 (796)
Q Consensus       310 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll  389 (796)
                      +|..--..+..-|.+.|.++.|..+|..+.         -|..++..+.+.+++..|.++....      -+..+|..+.
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~   76 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC   76 (336)
T ss_dssp             C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence            343334445555556666666666666442         3445555555555555554444321      1334455555


Q ss_pred             HHHHhcCChHHHHHHHHhCCCCChhhHHHHHHHHHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcc
Q 036290          390 YMFCRCGAVEMAHSVFDNVSYKNITTWNELLSGYCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCR  460 (796)
Q Consensus       390 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~  460 (796)
                      ..+.+......+.-. ......+......++..|-..|.+++...++...... -.++...++.++..+++
T Consensus        77 ~~l~~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak  145 (336)
T d1b89a_          77 FACVDGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSK  145 (336)
T ss_dssp             HHHHHTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHT
T ss_pred             HHHHhCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHH
Confidence            555544443332111 1111122223344555555555555555555544321 12333344444444444

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.64  E-value=5.1e-05  Score=65.93  Aligned_cols=121  Identities=12%  Similarity=0.029  Sum_probs=84.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHH
Q 036290          619 YNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDML  697 (796)
Q Consensus       619 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~  697 (796)
                      +......+...|++++|+..|++..+.  .+.          ..........          ..+.|. ...|..+..++
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~--~~~----------~~~~~~~~~~----------~~~~~~~~~~~~nla~~~   87 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRY--VEG----------SRAAAEDADG----------AKLQPVALSCVLNIGACK   87 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--HHH----------HHHHSCHHHH----------GGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--hhh----------hhhhhhhHHH----------HHhChhhHHHHHHHHHHH
Confidence            444555667777888887777776541  100          0000000000          012333 55677788999


Q ss_pred             HhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290          698 SRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK  761 (796)
Q Consensus       698 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  761 (796)
                      .+.|++++|+..++++ .+.| +...|..+..++...|++++|+..++++++++|+++.++..|..
T Consensus        88 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~  153 (169)
T d1ihga1          88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK  153 (169)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            9999999999999888 5566 55789999999999999999999999999999999887666654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.63  E-value=0.00012  Score=63.43  Aligned_cols=28  Identities=14%  Similarity=0.122  Sum_probs=20.0

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036290          617 IVYNTLIMAYAHHGLVSEAMEIFDKMKL  644 (796)
Q Consensus       617 ~~~~~li~~~~~~g~~~~A~~~~~~m~~  644 (796)
                      ..+......+.+.|++++|...|++...
T Consensus        16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~   43 (168)
T d1kt1a1          16 AIVKEKGTVYFKGGKYVQAVIQYGKIVS   43 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4455566777788888888888877654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=0.0001  Score=60.28  Aligned_cols=93  Identities=16%  Similarity=0.083  Sum_probs=62.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-----chHHHH
Q 036290          619 YNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-----PDCYGC  692 (796)
Q Consensus       619 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~  692 (796)
                      +..+...+...|++++|+..|++.++  +.| +...+..+..+|.+.|++++|++.++++..-..-.+.     ..+|..
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            34556677778888888888888877  455 5666777777888888888888888877632111111     235556


Q ss_pred             HHHHHHhcCChHHHHHHHHhC
Q 036290          693 LVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       693 l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      +...+...+++++|++.+++.
T Consensus        85 lg~~~~~~~~~~~A~~~~~ka  105 (128)
T d1elra_          85 IGNSYFKEEKYKDAIHFYNKS  105 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHH
Confidence            666667777777777777654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.00016  Score=59.15  Aligned_cols=96  Identities=8%  Similarity=-0.007  Sum_probs=79.5

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCC---CC-----HHHHH
Q 036290          654 FVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQ---PS-----PTVYR  723 (796)
Q Consensus       654 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~---p~-----~~~~~  723 (796)
                      +..+...+...|++++|+..|++..+   +.|+ ...+..+..+|.+.|++++|++.++++ .+.   ++     ..+|.
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~   83 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKE---LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            44566788999999999999999984   4566 888999999999999999999999987 211   11     24677


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 036290          724 SLLSGCRIHGNKELGEWASEKLLLLLPKN  752 (796)
Q Consensus       724 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  752 (796)
                      .+...+...+++++|...+++.+..+|..
T Consensus        84 ~lg~~~~~~~~~~~A~~~~~kal~~~~~~  112 (128)
T d1elra_          84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTP  112 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Confidence            88888999999999999999999887753

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.41  E-value=0.00046  Score=58.37  Aligned_cols=114  Identities=13%  Similarity=0.113  Sum_probs=67.0

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036290          585 YVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLV-SEAMEIFDKMKLANLQPSQATFVSVMSACSH  663 (796)
Q Consensus       585 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~  663 (796)
                      ..+..-...+.+.|++.+|+..|.+.+..            +...... +...  ......    ....+|..+..+|.+
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~------------~~~~~~~~~~~~--~~~~~~----~~~~~~~Nla~~~~~   79 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDF------------FIHTEEWDDQIL--LDKKKN----IEISCNLNLATCYNK   79 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT------------TTTCTTCCCHHH--HHHHHH----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------CcchhhhhhHHH--HHhhhh----HHHHHHhhHHHHHHH
Confidence            34555667788999999999999655432            0000000 0000  000000    112355566667777


Q ss_pred             cCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH
Q 036290          664 KGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP  719 (796)
Q Consensus       664 ~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~  719 (796)
                      .|++++|+..++.+.   .+.|+ ..+|..++.++...|++++|...|++. .+.|+.
T Consensus        80 l~~~~~Al~~~~~al---~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n  134 (153)
T d2fbna1          80 NKDYPKAIDHASKVL---KIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN  134 (153)
T ss_dssp             TTCHHHHHHHHHHHH---HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred             hcccchhhhhhhccc---cccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            777777777777776   33454 667777777777777777777777766 455543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.41  E-value=0.02  Score=52.98  Aligned_cols=29  Identities=10%  Similarity=-0.183  Sum_probs=16.7

Q ss_pred             hHHHHHHHHHhcCCchHHHHHHHHHHhcC
Q 036290          415 TWNELLSGYCFNCCDADVLKTFCNIWESG  443 (796)
Q Consensus       415 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g  443 (796)
                      .+..+-..+.+.+++++|+++|++..+.|
T Consensus         4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g   32 (265)
T d1ouva_           4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK   32 (265)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence            34444445555666666666666665544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=8.2e-05  Score=57.00  Aligned_cols=71  Identities=17%  Similarity=0.014  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEe
Q 036290          689 CYGCLVDMLSRNGYLEDAKHVIEIM----P----FQPS-PTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLL  759 (796)
Q Consensus       689 ~~~~l~~~~~~~g~~~~A~~~~~~~----~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  759 (796)
                      .+..++..+.+.|++++|++.+++.    +    ..++ ..++..+..++.+.|++++|+..++++++++|+++.++..|
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl   86 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL   86 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            3446788888888888888888776    1    1222 36788899999999999999999999999999998876554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.36  E-value=0.0014  Score=56.82  Aligned_cols=57  Identities=11%  Similarity=-0.018  Sum_probs=33.6

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          654 FVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       654 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      +..+..++...|++++|+..++++.   .+.|. ...|..++.+|.+.|+.++|++.|+++
T Consensus        70 ~~~la~~~~~~g~~~~Al~~~~~al---~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          70 HTAKAEAEIACGRASAVIAELEALT---FEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH---HHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCchHHHHHHHHHH---HhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            4445555666666666666666665   23444 555666666666666666666666553

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.33  E-value=0.00056  Score=59.05  Aligned_cols=123  Identities=9%  Similarity=-0.017  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc
Q 036290          586 VASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHK  664 (796)
Q Consensus       586 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~  664 (796)
                      .+......+.+.|++++|++.|.+.+..         ...........       +...  +.| +...|..+..++.+.
T Consensus        29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~---------~~~~~~~~~~~-------~~~~--~~~~~~~~~~nla~~~~~~   90 (169)
T d1ihga1          29 DLKNIGNTFFKSQNWEMAIKKYTKVLRY---------VEGSRAAAEDA-------DGAK--LQPVALSCVLNIGACKLKM   90 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH---------HHHHHHHSCHH-------HHGG--GHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh---------hhhhhhhhhhH-------HHHH--hChhhHHHHHHHHHHHHhh
Confidence            3456677788999999999988443310         00000011110       0011  233 444566777788888


Q ss_pred             CCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 036290          665 GLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQP-SPTVYRSLLSGC  729 (796)
Q Consensus       665 g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~  729 (796)
                      |++++|+..++++.   .+.|+ +..|..++.+|.+.|++++|++.|++. .+.| +..+...+..+.
T Consensus        91 ~~~~~Ai~~~~~al---~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~  155 (169)
T d1ihga1          91 SDWQGAVDSCLEAL---EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK  155 (169)
T ss_dssp             TCHHHHHHHHHHHH---TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cccchhhhhhhhhh---hhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            89999999888887   56676 778888888899999999998888877 4455 344555554443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.32  E-value=0.0005  Score=59.26  Aligned_cols=143  Identities=10%  Similarity=0.018  Sum_probs=78.0

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 036290          584 VYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVS-EAMEIFDKMKLANLQPSQATFVSVMSACS  662 (796)
Q Consensus       584 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~t~~~ll~~~~  662 (796)
                      ...+......+.+.|++++|...|.+.+.            .+-..-... ......+.+       ....|..+..+|.
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~------------~~~~~~~~~~~~~~~~~~~-------~~~~~~Nla~~~~   75 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVS------------WLEMEYGLSEKESKASESF-------LLAAFLNLAMCYL   75 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------HHTTCCSCCHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------HHHHhhccchhhhhhcchh-------HHHHHHhHHHHHH
Confidence            44556667778888888888888843321            111100000 000011111       1224555666677


Q ss_pred             ccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCC-hHHH
Q 036290          663 HKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSP-TVYRSLLSGCRIHGN-KELG  738 (796)
Q Consensus       663 ~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~-~~~A  738 (796)
                      +.|++++|+..++.+.   .+.|+ ..+|..++.++...|++++|.+.|+++ .+.|+. .++..+.....+.+. .+..
T Consensus        76 ~l~~~~~Ai~~~~~al---~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~  152 (168)
T d1kt1a1          76 KLREYTKAVECCDKAL---GLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERD  152 (168)
T ss_dssp             HTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Hhhhcccchhhhhhhh---hcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence            7777777777777776   23454 666777777777777777777777776 445543 344444333323222 2344


Q ss_pred             HHHHHHHHcc
Q 036290          739 EWASEKLLLL  748 (796)
Q Consensus       739 ~~~~~~~~~~  748 (796)
                      .+++.++++.
T Consensus       153 kk~~~~~f~~  162 (168)
T d1kt1a1         153 RRTYANMFKK  162 (168)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            5555555543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.30  E-value=0.0016  Score=56.27  Aligned_cols=73  Identities=12%  Similarity=0.241  Sum_probs=63.8

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHh----hcCCCCCchHH
Q 036290          616 VIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHKGLVDKGCLLFKSMDS----QYGMQPSPDCY  690 (796)
Q Consensus       616 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~~~~  690 (796)
                      ...+..+...+...|++++|+..++++.+  ..| +...|..++.+|...|+.++|++.|+++.+    ..|+.|+..+-
T Consensus        67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~  144 (179)
T d2ff4a2          67 VLAHTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  144 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence            35677889999999999999999999999  678 888899999999999999999999999853    36899987653

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.30  E-value=0.00067  Score=57.58  Aligned_cols=96  Identities=11%  Similarity=0.048  Sum_probs=63.2

Q ss_pred             HHhccCCHHHHHHHHHHhHhhcCCCCC----------chHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCCH--
Q 036290          660 ACSHKGLVDKGCLLFKSMDSQYGMQPS----------PDCYGCLVDMLSRNGYLEDAKHVIEIM--------PFQPSP--  719 (796)
Q Consensus       660 ~~~~~g~~~~A~~~~~~~~~~~~~~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~--  719 (796)
                      .+...|++++|++.|++...-..-.|+          ..+|+.+..+|...|++++|.+.+++.        ...++.  
T Consensus        18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~   97 (156)
T d2hr2a1          18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK   97 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence            344556666666666666532222222          245666777777777777777776665        122221  


Q ss_pred             ---HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcc
Q 036290          720 ---TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAA  755 (796)
Q Consensus       720 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  755 (796)
                         ..+..+..+|...|++++|...+++++++.|+....
T Consensus        98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~  136 (156)
T d2hr2a1          98 LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE  136 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhch
Confidence               256778888999999999999999999987765544

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=7.4e-05  Score=77.83  Aligned_cols=113  Identities=13%  Similarity=-0.029  Sum_probs=59.2

Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHhccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 036290          583 EVYVASAVIDAYAKCGDIKGARMAFDQSFNSNDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSAC  661 (796)
Q Consensus       583 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~  661 (796)
                      +...+..+...+.+.|+.++|...+...+......++..+...+...|++++|...|++..+  +.| +...|+.|...+
T Consensus       119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~~~  196 (497)
T d1ya0a1         119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILA  196 (497)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHH
T ss_pred             hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCchHHHHHHHHHH
Confidence            34445556666667777777766653333222234566677777778888888888888777  566 456777777777


Q ss_pred             hccCCHHHHHHHHHHhHhhcCCCCC-chHHHHHHHHHHhc
Q 036290          662 SHKGLVDKGCLLFKSMDSQYGMQPS-PDCYGCLVDMLSRN  700 (796)
Q Consensus       662 ~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~  700 (796)
                      ...|+..+|...|.+..   .+.|+ +.++..|...+.+.
T Consensus       197 ~~~~~~~~A~~~y~ral---~~~~~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         197 SSKGDHLTTIFYYCRSI---AVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHTTCHHHHHHHHHHHH---SSSBCCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHH---hCCCCCHHHHHHHHHHHHHh
Confidence            78888888888877776   34444 66666676666543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.21  E-value=3.5e-05  Score=64.78  Aligned_cols=110  Identities=12%  Similarity=0.102  Sum_probs=66.2

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc----------CCHHHHHHHHHHhHhhcCCCCC-chHHHHH
Q 036290          626 YAHHGLVSEAMEIFDKMKLANLQP-SQATFVSVMSACSHK----------GLVDKGCLLFKSMDSQYGMQPS-PDCYGCL  693 (796)
Q Consensus       626 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~----------g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l  693 (796)
                      |-+.+.+++|...|+...+  +.| +...+..+..+|...          +.+++|+..|+++.   .+.|+ ..+|..+
T Consensus         7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl---~l~P~~~~a~~~l   81 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL---LIDPKKDEAVWCI   81 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH---HHCTTCHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH---HhcchhhHHHhhH
Confidence            4455667777777777777  556 445555555555433          33455666666655   34555 5555555


Q ss_pred             HHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceEEecC
Q 036290          694 VDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHVLLSK  761 (796)
Q Consensus       694 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  761 (796)
                      +.+|...|++.            ++...         ..+++++|.+.++++++++|++..++..|..
T Consensus        82 G~~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~  128 (145)
T d1zu2a1          82 GNAYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEM  128 (145)
T ss_dssp             HHHHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHH
Confidence            55555443221            11110         1124678999999999999999888777654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.05  E-value=0.0004  Score=58.03  Aligned_cols=70  Identities=13%  Similarity=0.155  Sum_probs=54.3

Q ss_pred             HHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhc----------CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 036290          594 YAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHH----------GLVSEAMEIFDKMKLANLQP-SQATFVSVMSA  660 (796)
Q Consensus       594 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~  660 (796)
                      |-+.+.+++|...|+..+..  .+...+..+..++...          +.+++|++.|++..+  +.| +..+|..+..+
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~--l~P~~~~a~~~lG~~   84 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNA   84 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH--hcchhhHHHhhHHHH
Confidence            45667899999999777653  4778888888777643          456889999999998  778 66788888888


Q ss_pred             HhccC
Q 036290          661 CSHKG  665 (796)
Q Consensus       661 ~~~~g  665 (796)
                      |...|
T Consensus        85 y~~~g   89 (145)
T d1zu2a1          85 YTSFA   89 (145)
T ss_dssp             HHHHH
T ss_pred             HHHcc
Confidence            77655

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00035  Score=72.57  Aligned_cols=129  Identities=12%  Similarity=0.012  Sum_probs=70.0

Q ss_pred             cCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 036290          597 CGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLF  674 (796)
Q Consensus       597 ~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~  674 (796)
                      .+.++.|+..+......  ++...+..+...+.+.|+.++|...+++...  ..| ..++..+...+...|++++|...|
T Consensus        99 ~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~~-~~~~~~LG~l~~~~~~~~~A~~~y  175 (497)
T d1ya0a1          99 SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS--YIC-QHCLVHLGDIARYRNQTSQAESYY  175 (497)
T ss_dssp             HHHHHHHHHHHTC-------------------------------CCHHHH--HHH-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC--CCH-HHHHHHHHHHHHHcccHHHHHHHH
Confidence            45566666666444332  3555667777778888888888877766654  222 245666777888888899999988


Q ss_pred             HHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHh
Q 036290          675 KSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM-P-FQPSPTVYRSLLSGCRI  731 (796)
Q Consensus       675 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~  731 (796)
                      +++.   .+.|+ ...|+.|+.++...|+..+|...|.+. . ..|-+.++..|...+.+
T Consensus       176 ~~A~---~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         176 RHAA---QLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHH---HHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHH---HHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            8888   45777 678888888888889998888888776 2 23455566666655543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.45  E-value=0.0063  Score=51.19  Aligned_cols=96  Identities=11%  Similarity=-0.016  Sum_probs=68.4

Q ss_pred             HHHHH--HHHHHhcCChHHHHHHHHHHHHCCCC-CC----------HHHHHHHHHHHhccCCHHHHHHHHHHhHhhc---
Q 036290          618 VYNTL--IMAYAHHGLVSEAMEIFDKMKLANLQ-PS----------QATFVSVMSACSHKGLVDKGCLLFKSMDSQY---  681 (796)
Q Consensus       618 ~~~~l--i~~~~~~g~~~~A~~~~~~m~~~g~~-p~----------~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~---  681 (796)
                      +|..+  ...+...|++++|+..|++..+..-. |+          ...|+.+..+|...|++++|...+++..+-.   
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            34444  34456678888888888888762111 11          3567888889999999999999988876321   


Q ss_pred             -CCCCC-----chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          682 -GMQPS-----PDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       682 -~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                       ...++     ...+..+..+|...|++++|++.|++.
T Consensus        89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~A  126 (156)
T d2hr2a1          89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV  126 (156)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence             22232     235677899999999999999999886

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.32  E-value=0.0013  Score=61.01  Aligned_cols=116  Identities=9%  Similarity=-0.063  Sum_probs=76.9

Q ss_pred             HHhcCCHHHHHHHHhccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHH
Q 036290          594 YAKCGDIKGARMAFDQSFNS--NDVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQ-ATFVSVMSACSHKGLVDKG  670 (796)
Q Consensus       594 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~A  670 (796)
                      ..+.|++++|+..+++.++.  .|...+..+...++..|++++|.+.++...+  ..|+. ..+..+...+...+..+++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~--l~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHhccccHHH
Confidence            34678889998888777654  3888999999999999999999999999998  67754 3444444444333333332


Q ss_pred             HHHHHHhHhhcCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC
Q 036290          671 CLLFKSMDSQYGMQPS-PDCYGCLVDMLSRNGYLEDAKHVIEIM  713 (796)
Q Consensus       671 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  713 (796)
                      ..-..... . -..|+ ...+......+.+.|+.++|.+.++++
T Consensus        84 ~~~~~~~~-~-~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a  125 (264)
T d1zbpa1          84 AQGAATAK-V-LGENEELTKSLVSFNLSMVSQDYEQVSELALQI  125 (264)
T ss_dssp             TTSCCCEE-C-CCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHhhhhh-c-ccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            22111111 0 01222 333444566778899999999999887

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.016  Score=43.50  Aligned_cols=57  Identities=14%  Similarity=-0.039  Sum_probs=25.3

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCC-----CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 036290          622 LIMAYAHHGLVSEAMEIFDKMKLAN-----LQPS-QATFVSVMSACSHKGLVDKGCLLFKSMD  678 (796)
Q Consensus       622 li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~  678 (796)
                      +...+.+.|++++|...|++..+..     ..++ ..++..+..++.+.|++++|+..++++.
T Consensus        11 lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL   73 (95)
T d1tjca_          11 LGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL   73 (95)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHH
Confidence            3444444455555555444443310     0111 2334445555555555555555555554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.55  E-value=0.084  Score=40.91  Aligned_cols=73  Identities=10%  Similarity=-0.022  Sum_probs=52.2

Q ss_pred             CCchHHHHHHHHHHhcC---ChHHHHHHHHhC-CCCC-CH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCCcceE
Q 036290          685 PSPDCYGCLVDMLSRNG---YLEDAKHVIEIM-PFQP-SP-TVYRSLLSGCRIHGNKELGEWASEKLLLLLPKNDAAHV  757 (796)
Q Consensus       685 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  757 (796)
                      |++.+-.....++.+..   +.++|+.++++. ...| +. ..+..|.-+|.+.|++++|+..++++++++|++..+..
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~  111 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  111 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence            44556666777777654   455777777776 2234 33 46677888888899999999999999999998876643

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=93.38  E-value=0.64  Score=36.81  Aligned_cols=77  Identities=10%  Similarity=-0.086  Sum_probs=33.6

Q ss_pred             CHHHHHHHHhccCCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHH
Q 036290          599 DIKGARMAFDQSFNSNDVIVYNTLIMAYAH----HGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSH----KGLVDKG  670 (796)
Q Consensus       599 ~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~A  670 (796)
                      +.++|.+.++......+......|...|..    ..+.++|.++|++..+.|.   ......|...|..    ..+.++|
T Consensus        38 ~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~---~~a~~~Lg~~y~~G~gv~~d~~~A  114 (133)
T d1klxa_          38 NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLND---QDGCLILGYKQYAGKGVVKNEKQA  114 (133)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred             CHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccCc---chHHHHHHHHHHcCCccCCCHHHH
Confidence            334444444333333444444444433332    2345556666666555441   2222223222222    3356666


Q ss_pred             HHHHHHhH
Q 036290          671 CLLFKSMD  678 (796)
Q Consensus       671 ~~~~~~~~  678 (796)
                      .++|+...
T Consensus       115 ~~~~~~Aa  122 (133)
T d1klxa_         115 VKTFEKAC  122 (133)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=92.40  E-value=0.8  Score=36.21  Aligned_cols=111  Identities=14%  Similarity=-0.087  Sum_probs=67.3

Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHHHHHh----cCChHHH
Q 036290          631 LVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVDMLSR----NGYLEDA  706 (796)
Q Consensus       631 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A  706 (796)
                      ++++|.++|++..+.|..   .....|.  .....+.++|.+++++..+. |   ++.....|...|..    ..+.++|
T Consensus         8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~A   78 (133)
T d1klxa_           8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA   78 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHHH
Confidence            567777777777776522   2222222  23455677888888777633 3   34455556666554    3467788


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCC
Q 036290          707 KHVIEIMPFQPSPTVYRSLLSGCRI----HGNKELGEWASEKLLLLLP  750 (796)
Q Consensus       707 ~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p  750 (796)
                      .++|++.-..-++.....|...|..    ..|.++|...++++-+...
T Consensus        79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            8888877323345555556555544    3578888888888776543

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=91.45  E-value=2.2  Score=32.40  Aligned_cols=140  Identities=16%  Similarity=0.148  Sum_probs=82.7

Q ss_pred             HHhcCCchHHHHHHHHHHhcCCcccHHHHHHHHHHhcccCcHHHHHHHHHHHHHh-CCCCCchhHhHHHHHHHhcCCcch
Q 036290          423 YCFNCCDADVLKTFCNIWESGVEVNGCTFFYVVETCCRSENQQMVGQIHGAIIKT-GFSSCGYICSSLIKSYVNFGQLDN  501 (796)
Q Consensus       423 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~  501 (796)
                      +.-.|..++..+++.+....   .+..-|+.+|.-....-+-+...+.++.+-+. .+.|- .-...++.++...+... 
T Consensus        12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C-~Nlk~vv~C~~~~n~~s-   86 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKC-QNLKSVVECGVINNTLN-   86 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGC-SCTHHHHHHHHHTTCCC-
T ss_pred             HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhh-hcHHHHHHHHHHhcchH-
Confidence            34467777777777776653   24445555555555555555555555544221 11110 11223344444333322 


Q ss_pred             HHHHHhcCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHhCCC
Q 036290          502 SFEFSNGAERLDMASWGAMMSALVHQGHNHEAVTIFHSLVEAGEKPDEYILGTILNSCAAIGAYQRTKSIHPFVIKLGFN  581 (796)
Q Consensus       502 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  581 (796)
                                   ...+..+..+.+.|+-+.-.+++.++.+. -+|++.....+..+|.+.|+..++.+++.+.-+.|+.
T Consensus        87 -------------e~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          87 -------------EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             -------------HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             -------------HHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence                         23445566777788888888888876553 3777777788888888888888888888877777754

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=88.41  E-value=12  Score=36.37  Aligned_cols=201  Identities=13%  Similarity=-0.037  Sum_probs=102.8

Q ss_pred             CChhHHHHHHHHHHHcCCCCCHHHHHH----HHHHHhccCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 036290          528 GHNHEAVTIFHSLVEAGEKPDEYILGT----ILNSCAAIGAYQRTKSIHPFVIKLGFNTEVYVASAVIDAYAKCGDIKGA  603 (796)
Q Consensus       528 ~~~~~A~~~~~~m~~~g~~p~~~t~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  603 (796)
                      .+.+.|..++........ .+..-...    +.......+..+.+...+......+.  +.....-.+......+++..+
T Consensus       228 ~d~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~  304 (450)
T d1qsaa1         228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGL  304 (450)
T ss_dssp             HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHH
T ss_pred             cChhHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHH
Confidence            456667777766654322 22221111    11222334555666666555544433  233333344445556777777


Q ss_pred             HHHHhccCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhc
Q 036290          604 RMAFDQSFNSN--DVIVYNTLIMAYAHHGLVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQY  681 (796)
Q Consensus       604 ~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~  681 (796)
                      ...+..+...+  ...-.-=+.+++...|+.+.|...|.....   .++   |-..+.+ .+.|..-       .+. ..
T Consensus       305 ~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~---fYG~LAa-~~Lg~~~-------~~~-~~  369 (450)
T d1qsaa1         305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG---FYPMVAA-QRIGEEY-------ELK-ID  369 (450)
T ss_dssp             HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS---HHHHHHH-HHTTCCC-------CCC-CC
T ss_pred             HHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC---hHHHHHH-HHcCCCC-------CCC-cC
Confidence            77773333222  222223445667777777777777777653   233   2222211 1111100       000 00


Q ss_pred             CCCCC-chH-----HHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 036290          682 GMQPS-PDC-----YGCLVDMLSRNGYLEDAKHVIEIMPFQPSPTVYRSLLSGCRIHGNKELGEWASEKLL  746 (796)
Q Consensus       682 ~~~p~-~~~-----~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  746 (796)
                      ...++ ...     -..-+..+...|+..+|...+..+.-..+......+.....+.|.+..|+....++-
T Consensus       370 ~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~~~~~~~~la~lA~~~g~~~~aI~a~~~~~  440 (450)
T d1qsaa1         370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGK  440 (450)
T ss_dssp             CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             CCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCCCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence            00000 000     112356677889999998887766333456666677777888899999988877663

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=83.52  E-value=7.5  Score=29.42  Aligned_cols=62  Identities=10%  Similarity=0.036  Sum_probs=45.6

Q ss_pred             chHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 036290          687 PDCYGCLVDMLSRNGYLEDAKHVIEIM--PFQPSPTVYRSLLSGCRIHGNKELGEWASEKLLLL  748 (796)
Q Consensus       687 ~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  748 (796)
                      ......-++.+..+|+-+.-.++++.+  .-+|++...-.+..+|.+-|+..++.+++.++-+.
T Consensus        86 se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~  149 (161)
T d1wy6a1          86 NEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK  149 (161)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence            344455566777778877777777763  35677888888888898999998888888877654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.29  E-value=2.4  Score=32.49  Aligned_cols=69  Identities=10%  Similarity=0.066  Sum_probs=48.3

Q ss_pred             CCHHHHHHHHHHHhcc---CCHHHHHHHHHHhHhhcCCCCC--chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH
Q 036290          649 PSQATFVSVMSACSHK---GLVDKGCLLFKSMDSQYGMQPS--PDCYGCLVDMLSRNGYLEDAKHVIEIM-PFQPSPT  720 (796)
Q Consensus       649 p~~~t~~~ll~~~~~~---g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~  720 (796)
                      |+..|--....++.+.   .+.++|+.+++++.+.   .|+  ..++..|.-+|.+.|++++|.+.++++ ...|+..
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~---~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~  107 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  107 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc---CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence            4555544455556544   4567888888888743   343  466677888899999999999999887 6667654

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.19  E-value=5.6  Score=28.54  Aligned_cols=63  Identities=11%  Similarity=0.192  Sum_probs=48.0

Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhhcCCCCCchHHHHHHH
Q 036290          631 LVSEAMEIFDKMKLANLQPSQATFVSVMSACSHKGLVDKGCLLFKSMDSQYGMQPSPDCYGCLVD  695 (796)
Q Consensus       631 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~  695 (796)
                      +.-++.+-++.+....+.|+.....+.++||.+.+++..|..+|+.++.+  +.++...|..++.
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K--~~~~k~~y~yilq   83 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ   83 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCcHHHHHHHHH
Confidence            34456666777777778899999999999999999999999999988755  4445556665553