Citrus Sinensis ID: 036294

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830---

MALTTSKLTELPFRNSLTLTSHSTPSLNHLPFSSSSRKTPSFQLLKPFSSLRTNQNPRTDSQNQQFPKPRSPSTSAPWLNNWSRPKPPSTENANKLGGRNQIDEKQTSPDSYPRYSDSDNKGRNAIERIVLRLRNLGLGSDDEEEGEEEEDDINGAATGEERLEDLLRREWVRPNTVLREVEGEEDDSLLPWEREEEENLRAGGEKPAGETRRRRMKAPTLAELTIEDEELRRLRRNGMYLRERINVPKAGLTQDVMRKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGGLVIWRAGSVMVVYRGNNYAGPSSKPQPLDGDGDTLFVPHVSSTDGSTARSVDEKSEVPVRILDHSKPMTEEEAECNSLLDSLGPRFQEWWGTGILPVDADLLPPKVDGYKTPFRLLPTGMRSRLTNAEMTDLRRLARSLPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRGIQNTNNKLMAEELKSLTGGTLLQRNKFYIVLYRGKDFLPPNVASALAEREQCAKQIQDVEEKVRSKTLEATPSGETEGQAPAGTLAEFYEAQKRWGREVSAEEREKMVEEASKAKHARLVKRIEHKLAVSQAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLRMKAFLPLGIRGVFDGVVENMHLHWKYRELVKLITKQKTLAYVEDTARLLEYESGGILIAIERVPKGFALIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHISDLENTIEQMKKEIGVSKDEEDGNIRCSGDLKQFDHVSVLPQNEDDDYVSDEDFDSEADEDSELSSFESDDNDLSKNG

ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccHHHHHHHHHHHcccccccHHHHccccccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccEEEEEEEcccHHHHHHHHHHHHHHHccEEEEEEccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccEEEEEEcccccccHHHHHHHHHHccccEEEEEcccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccEEEEEEccccHHHHHHHHHHHHHHHccEEEEEEEEccccEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccHEEcccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHcEccccccHHHHHHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHcccEEEEEcccEEEEEEcccccccccccHHHcccccccccccccccccccccHcccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccEEEEccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHccccccccEcccccccccHHHHHHHHHHccEEEEEEEccccHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccc

malttskltelpfrnsltltshstpslnhlpfssssrktpsfqllkpfsslrtnqnprtdsqnqqfpkprspstsapwlnnwsrpkppstenanklggrnqidekqtspdsyprysdsdnkgrNAIERIVLRLRnlglgsddeeegeeeeddingaaTGEERLEDLLRREwvrpntvlrevegeeddsllpwEREEEENlraggekpagetrrrrmkaptlaeltiEDEELRRLRRNGMYLrerinvpkagltqDVMRKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGGLVIWRAGSVMVVYrgnnyagpsskpqpldgdgdtlfvphvsstdgstarsvdeksevpvrildhskpmteeEAECNSLLDslgprfqewwgtgilpvdadllppkvdgyktpfrllptgmrsrltnaeMTDLRRLARSlpchfalgrnrnhQGLAVAILKLWEKSLVAKIAVKRGIQNTNNKLMAEELKsltggtllqrnKFYIVLYrgkdflppnvASALAEREQCAKQIQDVEEKVRSktleatpsgetegqapagTLAEFYEAQKRWGREVSAEEREKMVEEASKAKHARLVKRIEHKLAVSQAKKLRAERLLAKIEAsmvpsgpdydqetitDEERAMFRRVGLRMKaflplgirgVFDGVVENMHLHWKYRELVKLITKQKTLAYVEDTARLLEYESGGILIAIERVPKGFALIFYrgknyrrpislrprnLLTKAKALKRSVAMQRHEALSQHISDLENTIEQMKKEIgvskdeedgnircsgdlkqfdhvsvlpqnedddyvsdedfdseadedselssfesddndlskng

malttskltelpfrnsltltshstpsLNHLPFSSSSRKTPSFQLLKPfsslrtnqnprtdsqnqqfpkprspstsapwlnnwsrpkppstenanklggrnqidekqtspdsyprysdsdnkgrnaIERIVLRLRNLglgsddeeegeeeeddingaatgeerledllrrewvrpntvlrevegeeddsllpwereeeenlraggekpagetrrrrmkaptlaeltiedeelrRLRRngmylrerinvpkagltqdvmRKIHDKWRKDELVRLKFHEVLatdmktaheiverrtgglviwRAGSVMVVYRGNNYAGPSSKPQPLDGDGDTLFVPHVsstdgstarsvdeksevpvrildhskpmteEEAECNSLLDSLGPRFQEWWGTGILPVDADLLPPKVDGYKtpfrllptgmrsrltnAEMTDLRRLARSLPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVkrgiqntnNKLMAEELKsltggtllqRNKFYIVLYRGKDFLPPNVASALAEREQCAKQIQDVEEKVRsktleatpsgetegqapagtLAEFYEAQKRWGREVSAEEREKMVEEASKAKHARLVKRIEHKLAVSQAKKLRAERLLAKieasmvpsgpdydqetiTDEERAMFRRVGLRMKAFLPLGIRGVFDGVVENMHLHWKYRELVKLITKQKTLAYVEDTARLLEYESGGILIAIERVPKGFALIFYRgknyrrpislrprnlLTKAKALKRSVAMQRHEALSQHISDLENTIEQMKKEIgvskdeedgNIRCSGDLKQFDHVSVLPQNEDDDYVSDEDFDSeadedselssfesddndlskng

MALTTSKLTELPFRnsltltshstpslnhlPFSSSSRKTPSFQLLKPFSSLRTNQNPRTDSQNQQFPKPRSPSTSAPWLNNWSRPKPPSTENANKLGGRNQIDEKQTspdsyprysdsdNKGRNAIERIVLRLRNLGLGSddeeegeeeeddINGAATGeerledllrreWVRPNTVLREVEGEEDDSLLPWEREEEENLRAGGEKPAGETRRRRMKAPTLAELTIEDEELRRLRRNGMYLRERINVPKAGLTQDVMRKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGGLVIWRAGSVMVVYRGNNYAGPSSKPQPLDGDGDTLFVPHVSSTDGSTARSVDEKSEVPVRILDHSKPMTEEEAECNSLLDSLGPRFQEWWGTGILPVDADLLPPKVDGYKTPFRLLPTGMRSRLTNAEMTDLRRLARSLPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRGIQNTNNKLMAEELKSLTGGTLLQRNKFYIVLYRGKDFLPPNVASALAEREQCAKQIQDVEEKVRSKTLEATPSGETEGQAPAGTLAEFYEAQKRWGREVSAEEREKMVEEASKAKHARLVKRIEHKLAVSQAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLRMKAFLPLGIRGVFDGVVENMHLHWKYRELVKLITKQKTLAYVEDTARLLEYESGGILIAIERVPKGFALIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHISDLENTIEQMKKEIGVSKDEEDGNIRCSGDLKQFDHVSVLPQNedddyvsdedfdseadedselssfesddndlsKNG

*******************************************************************************************************************************RIVLRLR************************************WV************************************************************RLRRNGMYLRERINVPKAGLTQDVMRKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGGLVIWRAGSVMVVYRGNNY***********************************************************LLDSLGPRFQEWWGTGILPVDADLLPPKVDGYKTPFRLLPTGMRSRLTNAEMTDLRRLARSLPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRGIQNTNNKLMAEELKSLTGGTLLQRNKFYIVLYRGKDFLPPNVASA***********************************************************************************************************************RAMFRRVGLRMKAFLPLGIRGVFDGVVENMHLHWKYRELVKLITKQKTLAYVEDTARLLEYESGGILIAIERVPKGFALIFYRGKNYRRPISLRPRNLLT***************************************************************************************************

*******LTEL***********************************************************************************************************************************************************************************************************************EDEELRRLRRNGMYLRERINVPKAGLTQDVMRKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGGLVIWRAGSVMVVYRGNNYA*****************************************************AECNSLLDSLGPRFQEWWGTGILPVDADLLPPKVDGYKTPFRLLPTGMRSRLTNAEMTDLRRLARSLPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRGIQNTNNKLMAEELKSLTGGTLLQRNKFYIVLYRGKDFLPPNVASALAEREQC**********************************************************************IEHKLAVSQAKKLRAERL*********************DEERAMFRRVGLR*****PLGIRGVFDGVVENMHLHWKYRELVKLITKQKTLAYVEDTARLLEYESGGILIAIERVPKGFALIFYRGKNYRRPISLRPRNLLT**********************DLENTIEQ*********************************************************************

MALTTSKLTELPFRNSLTLTSHSTPSLNHL**********SFQLLKPFSSLR***********************APWLNNWSRPKPPSTENANKLGGRNQIDEKQTSPDSYPRYSDSDNKGRNAIERIVLRLRNLGLG*************INGAATGEERLEDLLRREWVRPNTVLREVEGEEDDSLLPWERE*********************KAPTLAELTIEDEELRRLRRNGMYLRERINVPKAGLTQDVMRKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGGLVIWRAGSVMVVYRGNNYAGPSSKPQPLDGDGDTLFVPHVS**************EVPVRILDHSK*********NSLLDSLGPRFQEWWGTGILPVDADLLPPKVDGYKTPFRLLPTGMRSRLTNAEMTDLRRLARSLPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRGIQNTNNKLMAEELKSLTGGTLLQRNKFYIVLYRGKDFLPPNVASALAEREQCAKQIQDVEEKV***************QAPAGTLAEFYEAQKRW*********************ARLVKRIEHKLAVSQAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLRMKAFLPLGIRGVFDGVVENMHLHWKYRELVKLITKQKTLAYVEDTARLLEYESGGILIAIERVPKGFALIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHISDLENTIEQMKKEIGVSKDEEDGNIRCSGDLKQFDHVSVLPQNEDDDYVS****************************

*****SKLTELPFRNSLTLTSHSTPSLNHLPFSSSSRK*****************************************N*W**P*PPS*************************************ERIVLRLRNLGLGS*****************TGEERL*DLLRREWVRP*************************************************LTIEDEELRRLRRNGMYLRERINVPKAGLTQDVMRKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGGLVIWRAGSVMVVYRGNNYAGP*********************************************PMTEEEAECNSLLDSLGPRFQEWWGTGILPVDADLLPPKVDGYKTPFRLLPTGMRSRLTNAEMTDLRRLARSLPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRGIQNTNNKLMAEELKSLTGGTLLQRNKFYIVLYRGKDFLPPNVASALAEREQCAKQIQDVEEKVRSKTLEATP********PAGTLAEFYEAQKRWGREVSAEEREKMVEEASKAKHARLVKRIEHKLAVSQAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLRMKAFLPLGIRGVFDGVVENMHLHWKYRELVKLITKQKTLAYVEDTARLLEYESGGILIAIERVPKGFALIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHISDLENTIEQMKKEIGVSK************************************************************

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MALTTSKLTELPFRNSLTLTSHSTPSLNHLPFSSSSRKTPSFQLLKPFSSLRTNQNPRTDSQNQQFPKPRSPSTSAPWLNNWSRPKPPSTENANKLGGRNQIDEKQTSPDSYPRYSDSDNKGRNAIERIVLRLRNLGLGSDDEEEGEEEEDDINGAATGEERLEDLLRREWVRPNTVLREVEGEEDDSLLPWEREEEENLRAGGEKPAGETRRRRMKAPTLAELTIEDEELRRLRRNGMYLRERINVPKAGLTQDVMRKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGGLVIWRAGSVMVVYRGNNYAGPSSKPQPLDGDGDTLFVPHVSSTDGSTARSVDEKSEVPVRILDHSKPMTEEEAECNSLLDSLGPRFQEWWGTGILPVDADLLPPKVDGYKTPFRLLPTGMRSRLTNAEMTDLRRLARSLPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRGIQNTNNKLMAEELKSLTGGTLLQRNKFYIVLYRGKDFLPPNxxxxxxxxxxxxxxxxxxxxxxxxxxxxATPSGETEGQAPAGTLAEFYEAQKRWGREVSAEEREKMVEEASKAKHARLVKRIEHKLAVSQAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLRMKAFLPLGIRGVFDGVVENMHLHWKYRELVKLITKQKTLAYVEDTARLLEYESGGILIAIERVPKGFALIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRxxxxxxxxxxxxxxxxxxxxxxxxxxxxEDGNIRCSGDLKQFDHVSVLPQNEDDDYVSDEDFDSEADEDSELSSFESDDNDLSKNG

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		833	2.2.26 [Sep-21-2011]
Q9LF10		720	Chloroplastic group IIA i	no	no	0.775	0.897	0.383	1e-118
Q9FYT6		715	Chloroplastic group IIA i	N/A	no	0.677	0.788	0.425	1e-113
Q6YYA3		725	Chloroplastic group IIA i	no	no	0.667	0.766	0.430	1e-113
Q67XL4		444	Uncharacterized CRM domai	no	no	0.214	0.403	0.313	2e-18
Q9SL79		701	CRS2-associated factor 1,	no	no	0.097	0.115	0.341	4e-10
Q6Z4U2		428	CRS2-associated factor 1,	no	no	0.093	0.182	0.379	7e-10
Q657G7		607	CRS2-associated factor 2,	no	no	0.109	0.149	0.336	3e-09
Q9FFU1		358	CRS2-associated factor 2,	no	no	0.122	0.284	0.367	6e-09
Q84N48		611	CRS2-associated factor 2,	N/A	no	0.109	0.148	0.326	7e-09
Q0J7J7		366	CRS2-associated factor 2,	no	no	0.092	0.210	0.384	1e-08

>sp\|Q9LF10\|CRS1_ARATH Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=2 SV=2	Back alignment and function desciption

 Score =  427 bits (1098), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 283/737 (38%), Positives = 397/737 (53%), Gaps = 91/737 (12%)

Query: 46  KPFSSLRTNQNPR--TDSQNQQFPKPRSPST------SAPWLNNWSRPKPPSTENANKLG 97
           + F SL TN + R    SQ  QF + R  S       +APW+      +P    +  K  
Sbjct: 48  RAFPSLITNSSSRRAKSSQFDQFRENRGVSDAAIKVPTAPWMKGPLLLRPDEILDTKKRN 107

Query: 98  GRNQIDEKQTSPDSYPRYSDSDNKGRNAIERIVLRLRNLGLGSDDEEEGEEEEDDINGAA 157
              +++EK     +     +S  +G+ A+++IV  +  L   SD EE   ++  +     
Sbjct: 108 KPRKVEEKTFKALNR---RESGVRGKKAMKKIVRNVEKLDEDSDSEETQMDDLSEFEYLG 164

Query: 158 TGEERLEDLLRREWVRPNTVLREVEGEEDDSLLPWEREEEENLRAGGEKPAGETRRRRMK 217
             EE++E                   +     +PWEREEE  +             RRMK
Sbjct: 165 RIEEKVES-----------------KDRFGGKMPWEREEERFIL------------RRMK 195

Query: 218 ---APTLAELTIEDEELRRLRRNGMYLRERINVPKAGLTQDVMRKIHDKWRKDELVRLKF 274
               PT AEL +++  L RLRR    +R+ +NV KAG+T+ V+ KI   W+ +EL  ++F
Sbjct: 196 KESVPTTAELILDEGLLNRLRREASKMRKWVNVRKAGVTELVVNKIKSMWKLNELAMVRF 255

Query: 275 HEVLATDMKTAHEIVERRTGGLVIWRAGSVMVVYRGNNYAGPSSKPQPLDGDGDTLFVPH 334
              L  +M+ A EI+E +TGGLV+      +VVYRG    GPS   +  D    +L+   
Sbjct: 256 DVPLCRNMERAQEIIEMKTGGLVVLSKKEFLVVYRG----GPSYSSEGQDEISSSLY--- 308

Query: 335 VSSTDGSTARSVDEKSEVPVRILDHSKPMTEEEAECNSLLDSLGPRFQEWWGTGILPVDA 394
                                           E E + LLD LGPR+ +WW     PVDA
Sbjct: 309 --------------------------------EREADRLLDGLGPRYMDWWMRRPFPVDA 336

Query: 395 DLLPPKVDGYKTPFRLLPTGMRSRLTNAEMTDLRRLARSLPCHFALGRNRNHQGLAVAIL 454
           DLLP  V+GY TP R  P   R++LT+ E+T LR +A+ LP HF LGRN   QGLA AI+
Sbjct: 337 DLLPEVVNGYMTPSRRCPPNTRAKLTDEELTYLRNIAQPLPFHFVLGRNYGLQGLASAIV 396

Query: 455 KLWEKSLVAKIAVKRGIQNTNNKLMAEELKSLTGGTLLQRNKFYIVLYRGKDFLPPNVAS 514
           KLWEK ++AKIA+K G  NTNN+ MA+EL+ LTGG L+ RNK+ IVLYRGKDFL   VA 
Sbjct: 397 KLWEKCIIAKIAIKWGALNTNNEEMADELRYLTGGVLILRNKYLIVLYRGKDFLSDEVAD 456

Query: 515 ALAEREQCAKQIQDVEEKVRSKTLE----ATPSGETEGQAPAGTLAEFYEAQKRWGREVS 570
            + +RE+   + Q  EE  R   +E     T   + +    +GTL EF E Q+++G E+ 
Sbjct: 457 LVEDRERLLSRYQHFEETKRESDIELLEVVTNGKQLKETNKSGTLLEFQELQRKFG-EMD 515

Query: 571 AEEREKMVEEASKAKHARLVKRIEHKLAVSQAKKLRAERLLAKIEASMVPSGPDYDQETI 630
               E    EA KA+  + +K  EHKL++ ++K  ++   L K+ +   PS  D D E +
Sbjct: 516 PRNLET---EAEKARLEKELKSQEHKLSILKSKIEKSNMELFKLNSLWKPSEGDDDIEIL 572

Query: 631 TDEERAMFRRVGLRMKAFLPLGIRGVFDGVVENMHLHWKYRELVKLITKQKTLAYVEDTA 690
           T+EER   RR+GL+M + L LG RGVF GV+E +H HWK+RE+ K+IT QK  + V  TA
Sbjct: 573 TNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSRVVYTA 632

Query: 691 RLLEYESGGILIAIERVPKGFALIFYRGKNYRRPIS-LRPRNLLTKAKALKRSVAMQRHE 749
           + LE ES G+LI+IE++ +G A++ YRGKNY+RP S L  +NLLTK KAL+RSV MQR  
Sbjct: 633 KALETESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQNLLTKRKALQRSVVMQRLG 692

Query: 750 ALSQHISDLENTIEQMK 766
           +L       E  IE +K
Sbjct: 693 SLKFFAYQRERAIEDLK 709

Required for the splicing of group IIA introns in chloroplasts, by regulating the intron folding. Forms splicing particles with RNA. May also be involved in chloroplast protein translation.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9FYT6\|CRS1_MAIZE Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1	Back alignment and function description

>sp\|Q6YYA3\|CRS1_ORYSJ Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0360100 PE=2 SV=1	Back alignment and function description

>sp\|Q67XL4\|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2 SV=1	Back alignment and function description

>sp\|Q9SL79\|CAF1P_ARATH CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana GN=At2g20020 PE=1 SV=2	Back alignment and function description

>sp\|Q6Z4U2\|CAF1M_ORYSJ CRS2-associated factor 1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0174900 PE=2 SV=1	Back alignment and function description

>sp\|Q657G7\|CAF2P_ORYSJ CRS2-associated factor 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0323300 PE=2 SV=1	Back alignment and function description

>sp\|Q9FFU1\|CAF2M_ARATH CRS2-associated factor 2, mitochondrial OS=Arabidopsis thaliana GN=At5g54890 PE=2 SV=1	Back alignment and function description

>sp\|Q84N48\|CAF2P_MAIZE CRS2-associated factor 2, chloroplastic OS=Zea mays GN=CAF2 PE=1 SV=1	Back alignment and function description

>sp\|Q0J7J7\|CAF2M_ORYSJ CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0188000 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		833
224118814		806	predicted protein [Populus trichocarpa]	0.936	0.967	0.672	0.0
297734212		830	unnamed protein product [Vitis vinifera]	0.957	0.961	0.664	0.0
147815878		850	hypothetical protein VITISV_035294 [Viti	0.961	0.942	0.651	0.0
255582755		745	conserved hypothetical protein [Ricinus	0.869	0.971	0.691	0.0
297830494		846	EMB1865 [Arabidopsis lyrata subsp. lyrat	0.915	0.901	0.645	0.0
15229636		848	CRS1 / YhbY (CRM) domain-containing prot	0.912	0.896	0.634	0.0
356529577		791	PREDICTED: chloroplastic group IIA intro	0.930	0.979	0.629	0.0
356522763		734	PREDICTED: chloroplastic group IIA intro	0.824	0.935	0.696	0.0
357500379		820	Chloroplastic group IIA intron splicing	0.865	0.879	0.626	0.0
125553229		801	hypothetical protein OsI_20893 [Oryza sa	0.773	0.803	0.664	0.0

>gi\|224118814\|ref\|XP_002317913.1\| predicted protein [Populus trichocarpa] gi\|222858586\|gb\|EEE96133.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1071 bits (2771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 559/831 (67%), Positives = 654/831 (78%), Gaps = 51/831 (6%)

Query: 1   MALTTSKLTELPFRNSLTLTSHSTPSLNHLPFSSSSRKTPSFQLLK-PFS-----SLRTN 54
           M  TT+KLTELP R         T S   L   S   K  +FQ LK PFS     SLRTN
Sbjct: 1   MTFTTAKLTELPLR---------TTSTLPLSSHSLLSKIATFQSLKKPFSTATSSSLRTN 51

Query: 55  QNPRTDSQNQQFPKPRSPSTSAPWLNNWSRPKPPSTENANKLGGRNQIDEKQTSPDSYPR 114
           + P+T  +N  +     PS       N S   PPS  +  K                 P 
Sbjct: 52  KTPKTQQKNPNWISKWKPS------QNHSIKNPPSEVSQEK-----------------PH 88

Query: 115 YSDSDNKGRNAIERIVLRLRNLGLGSDDEEEGEE-EEDDINGAA-TGEERLEDLLRREWV 172
           Y  S++KG+NAIERIVLRLRNLGLGSDDE+E E  E  +ING   TGEERL DLL+REWV
Sbjct: 89  YF-SNDKGQNAIERIVLRLRNLGLGSDDEDELEGLEGSEINGGGLTGEERLGDLLKREWV 147

Query: 173 RPNTVLREVE--GEEDDSLLPWEREEEENLRAGGEKPAGETRRRRMKAPTLAELTIEDEE 230
           RP+TV+   +   + D+S+LPWEREE   +   G   +G  R+RR KAPTLAELTIEDEE
Sbjct: 148 RPDTVVFSNDEGSDSDESVLPWEREERGAVEMEGGIESG--RKRRGKAPTLAELTIEDEE 205

Query: 231 LRRLRRNGMYLRERINVPKAGLTQDVMRKIHDKWRKDELVRLKFHEVLATDMKTAHEIVE 290
           LRRLRR GM++RERI++PKAG+T  V+  IHD+WRK+ELVRLKFHEVLA DMKTAHEIVE
Sbjct: 206 LRRLRRMGMFIRERISIPKAGITNAVLENIHDRWRKEELVRLKFHEVLAHDMKTAHEIVE 265

Query: 291 RRTGGLVIWRAGSVMVVYRGNNYAGPSSKPQPLDGDGDTLFVPHVSSTDGSTARSVD--- 347
           RRTGGLVIWRAGSVMVV+RG NY GP SK QP D +GD LFVP VSSTD    RS +   
Sbjct: 266 RRTGGLVIWRAGSVMVVFRGTNYQGPPSKLQPADREGDALFVPDVSSTDSVMTRSSNIAT 325

Query: 348 ---EKSEVPVRILDHSKPMTEEEAECNSLLDSLGPRFQEWWGTGILPVDADLLPPKVDGY 404
              EKS++ +RI + ++ MTEEEAE NSLLD LGPRF+EWWGTG+LPVDADLLPPKV  Y
Sbjct: 326 SSSEKSKLVMRITEPTENMTEEEAELNSLLDDLGPRFEEWWGTGLLPVDADLLPPKVPCY 385

Query: 405 KTPFRLLPTGMRSRLTNAEMTDLRRLARSLPCHFALGRNRNHQGLAVAILKLWEKSLVAK 464
           KTPFRLLP GMR+RLTNAEMT++R+LA++LPCHFALGRNRNHQGLAVAILKLWEKSLVAK
Sbjct: 386 KTPFRLLPVGMRARLTNAEMTNMRKLAKALPCHFALGRNRNHQGLAVAILKLWEKSLVAK 445

Query: 465 IAVKRGIQNTNNKLMAEELKSLTGGTLLQRNKFYIVLYRGKDFLPPNVASALAEREQCAK 524
           IAVKRGIQNTNNKLMA+ELK LTGG LL RNK+YIV++RGKDFLP +VA+ALAER++  K
Sbjct: 446 IAVKRGIQNTNNKLMADELKMLTGGVLLLRNKYYIVIFRGKDFLPQSVAAALAERQEVTK 505

Query: 525 QIQDVEEKVRSKTLEATPSGETEGQAPAGTLAEFYEAQKRWGREVSAEEREKMVEEASKA 584
           QIQDVEE+VRS ++EA PSGE EG+A AGTLAEFYEAQ RWGR++S EEREKM+EEASKA
Sbjct: 506 QIQDVEERVRSNSVEAAPSGEDEGKALAGTLAEFYEAQARWGRDISTEEREKMIEEASKA 565

Query: 585 KHARLVKRIEHKLAVSQAKKLRAERLLAKIEASMVPSGPDYDQETITDEERAMFRRVGLR 644
           K ARLVKR EHKLA++QAKKLRAE LL+KIE +MVPSGPD+DQETI++EER MFRRVGLR
Sbjct: 566 KTARLVKRTEHKLAIAQAKKLRAESLLSKIETTMVPSGPDFDQETISEEERVMFRRVGLR 625

Query: 645 MKAFLPLGIRGVFDGVVENMHLHWKYRELVKLITKQKTLAYVEDTARLLEYESGGILIAI 704
           MKA+LPLGIRGVFDGV+ENMHLHWK+RELVKLI+KQKTLA+VEDTA+LLEYESGG+L+AI
Sbjct: 626 MKAYLPLGIRGVFDGVIENMHLHWKHRELVKLISKQKTLAFVEDTAKLLEYESGGVLVAI 685

Query: 705 ERVPKGFALIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHISDLENTIEQ 764
           ERVPKGFALI+YRGKNYRRPIS+RPRNLLTKAKALKRSVAMQRHEALSQHI +LE  IE+
Sbjct: 686 ERVPKGFALIYYRGKNYRRPISIRPRNLLTKAKALKRSVAMQRHEALSQHIFELEKNIEE 745

Query: 765 MKKEIGVSKDEEDGNIRCSGDLKQFDHVSVLPQNEDDDYVSDEDFDSEADE 815
           M KE+G+SK+EE+ N   S +    ++VS L Q+ED  + ++ D + + +E
Sbjct: 746 MVKEMGLSKEEENENNWSSEEHAPLNNVSKLTQSEDKAFFTESDSEDDYNE 796

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297734212\|emb\|CBI15459.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147815878\|emb\|CAN72582.1\| hypothetical protein VITISV_035294 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255582755\|ref\|XP_002532154.1\| conserved hypothetical protein [Ricinus communis] gi\|223528164\|gb\|EEF30228.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|297830494\|ref\|XP_002883129.1\| EMB1865 [Arabidopsis lyrata subsp. lyrata] gi\|297328969\|gb\|EFH59388.1\| EMB1865 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|15229636\|ref\|NP_188468.1\| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana] gi\|11994102\|dbj\|BAB01105.1\| unnamed protein product [Arabidopsis thaliana] gi\|17380904\|gb\|AAL36264.1\| unknown protein [Arabidopsis thaliana] gi\|332642570\|gb\|AEE76091.1\| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|356529577\|ref\|XP_003533366.1\| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|356522763\|ref\|XP_003530015.1\| PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|357500379\|ref\|XP_003620478.1\| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago truncatula] gi\|355495493\|gb\|AES76696.1\| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|125553229\|gb\|EAY98938.1\| hypothetical protein OsI_20893 [Oryza sativa Indica Group]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		833
TAIR\|locus:2094997		848	EMB1865 "embryo defective 1865	0.863	0.847	0.635	3.6e-240
TAIR\|locus:2094558		881	CFM3A "CRM family member 3A" [	0.701	0.662	0.466	4.2e-134
TAIR\|locus:2096662		1011	CFM2 "CRM family member 2" [Ar	0.468	0.385	0.5	4.5e-127
TAIR\|locus:2181372		720	CRS1 "ortholog of maize chloro	0.475	0.55	0.483	2.4e-116
TAIR\|locus:2123276		343	AT4G13070 [Arabidopsis thalian	0.211	0.513	0.388	1.7e-23
TAIR\|locus:2091458		491	AT3G27550 [Arabidopsis thalian	0.243	0.413	0.312	2.9e-23
TAIR\|locus:2056558		372	AT2G28480 [Arabidopsis thalian	0.255	0.572	0.319	8.6e-21
TAIR\|locus:2094438		444	LOH1 "LAG One Homologue 1" [Ar	0.322	0.605	0.278	8.3e-19
TAIR\|locus:2061604		701	CAF1 [Arabidopsis thaliana (ta	0.145	0.172	0.306	4.9e-11
TAIR\|locus:2126694		405	AT4G31010 [Arabidopsis thalian	0.141	0.291	0.328	1.8e-09

TAIR\|locus:2094997 EMB1865 "embryo defective 1865" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2315 (820.0 bits), Expect = 3.6e-240, P = 3.6e-240
 Identities = 472/743 (63%), Positives = 566/743 (76%)

Query:    49 SSLRTNQNPRTDSQNQQFPKPRSPSTSAPWLNNWSRPKPPSTENANKLGGRNQIDEKQTX 108
             S+ R+N N R D +N + P P       P  +             N  G R +  E++  
Sbjct:    61 SNNRSNNNRRLDQRNHK-PTPPWIDKWPPSSSGAGGDHAGKKGGENNGGDRIRSAEEEAE 119

Query:   109 XXXXXXXXXXXNKGRNAIERIVLRLRNLGLGSXXXXXXXXXXXX-INGA----ATGXXXX 163
                        +KG+NAIERIVLRLRNLGLGS             ING      TG    
Sbjct:   120 AKLRYLEK---DKGQNAIERIVLRLRNLGLGSDDEDDVEDDEGGGINGGDVKPVTGEERL 176

Query:   164 XXXXXXXWVRPNTVLREVEG--EEDDSLLPWEREEEENL--RAGGEKPAGETRRRRMKAP 219
                    WVRP+ +L E E   EED+ LLPWE+ EEE    R  GE      ++RR +AP
Sbjct:   177 GDLLKREWVRPDMMLAEGEESEEEDEVLLPWEKNEEEQAAERVVGEGGVAVMQKRRARAP 236

Query:   220 TLAELTIEDEELRRLRRNGMYLRERINVPKAGLTQDVMRKIHDKWRKDELVRLKFHEVLA 279
             +LAELT+ED ELRRLRR+GMYLR RIN+PKAGLTQ VM KI+D WRK+ELVRLKFHEVLA
Sbjct:   237 SLAELTVEDSELRRLRRDGMYLRVRINIPKAGLTQAVMEKIYDTWRKEELVRLKFHEVLA 296

Query:   280 TDMKTAHEIVERRTGGLVIWRAGSVMVVYRGNNYAGPSSKPQPLDGDGDTLFVPHVSSTD 339
              DMKTAHEIVERRTGG+VIWRAGSVMVVYRG +Y GP      + G  +TLFVP VSS  
Sbjct:   297 RDMKTAHEIVERRTGGMVIWRAGSVMVVYRGLDYKGPPVISNQMAGPKETLFVPDVSSA- 355

Query:   340 GSTARSVDEKSEVPVRILD-------HSKPMTEEEAECNSLLDSLGPRFQEWWGTGILPV 392
             G  A +  +    P+ I D         + MTEEE E NSLLDSLGPRFQEWWGTG+LPV
Sbjct:   356 GDEATNAKDNQSAPLVIKDPIIKNPIRKENMTEEEVEFNSLLDSLGPRFQEWWGTGVLPV 415

Query:   393 DADLLPPKVDGYKTPFRLLPTGMRSRLTNAEMTDLRRLARSLPCHFALGRNRNHQGLAVA 452
             DADLLPP + GYKTPFRLLPTGMRS LTNAEMT+LR++ ++LPCHFALGRNRNHQGLA A
Sbjct:   416 DADLLPPTIPGYKTPFRLLPTGMRSNLTNAEMTNLRKIGKTLPCHFALGRNRNHQGLAAA 475

Query:   453 ILKLWEKSLVAKIAVKRGIQNTNNKLMAEELKSLTGGTLLQRNKFYIVLYRGKDFLPPNV 512
             IL++WEKSL+AKIAVKRGIQNTNNKLMA+E+K+LTGG LL RNK+YIV+YRGKDFLP +V
Sbjct:   476 ILQIWEKSLIAKIAVKRGIQNTNNKLMADEVKTLTGGVLLLRNKYYIVIYRGKDFLPSSV 535

Query:   513 ASALAEREQCAKQIQDVEEKVRSKTLEAT-PSGETEGQAPAGTLAEFYEAQKRWGREVSA 571
             A+ LAER++  K+IQDVEE+VR++ +EA  P G+ +  A AGTLAEFYEAQ RWG+E++ 
Sbjct:   536 AATLAERQELTKEIQDVEERVRNREIEAVQPVGD-KVPAEAGTLAEFYEAQARWGKEITP 594

Query:   572 EEREKMVEEASKAKHARLVKRIEHKLAVSQAKKLRAERLLAKIEASMVPSGPDYDQETIT 631
             + REKM+EEAS+  +AR+VKRI+HKL ++Q+K  RAE+LL+KIEASM+P+GPDYDQE I+
Sbjct:   595 DHREKMIEEASRVANARVVKRIQHKLNLAQSKFQRAEKLLSKIEASMIPNGPDYDQEVIS 654

Query:   632 DEERAMFRRVGLRMKAFLPLGIRGVFDGVVENMHLHWKYRELVKLITKQKTLAYVEDTAR 691
             +EERAMFR+VGL+MKA+LP+GIRGVFDGV+ENMHLHWK+RELVKLI+KQK  A+VE+TAR
Sbjct:   655 EEERAMFRKVGLKMKAYLPIGIRGVFDGVIENMHLHWKHRELVKLISKQKNQAFVEETAR 714

Query:   692 LLEYESGGILIAIERVPKGFALIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEAL 751
             LLEYESGG+L+AIE+VPKGFALI+YRGKNYRRPISLRPRNLLTKAKALKRS+AMQRHEAL
Sbjct:   715 LLEYESGGVLVAIEKVPKGFALIYYRGKNYRRPISLRPRNLLTKAKALKRSIAMQRHEAL 774

Query:   752 SQHISDLENTIEQMKKEIGVSKD 774
             SQHIS+LE TIEQM+ ++  SK+
Sbjct:   775 SQHISELERTIEQMQSQL-TSKN 796

GO:0003723 "RNA binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

TAIR\|locus:2094558 CFM3A "CRM family member 3A" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2096662 CFM2 "CRM family member 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2181372 CRS1 "ortholog of maize chloroplast splicing factor CRS1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2123276 AT4G13070 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2091458 AT3G27550 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2056558 AT2G28480 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2094438 LOH1 "LAG One Homologue 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2061604 CAF1 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2126694 AT4G31010 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00120474	hypothetical protein (806 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		833
smart01103		84	smart01103, CRS1_YhbY, Escherichia coli YhbY is as	1e-19
pfam01985		84	pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain	7e-19
smart01103		84	smart01103, CRS1_YhbY, Escherichia coli YhbY is as	1e-18
smart01103		84	smart01103, CRS1_YhbY, Escherichia coli YhbY is as	8e-18
pfam01985		84	pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain	3e-16
pfam01985		84	pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain	4e-16

>gnl\|CDD\|198171 smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly	Back alignment and domain information

 Score = 83.7 bits (208), Expect = 1e-19
 Identities = 23/82 (28%), Positives = 41/82 (50%)

Query: 228 DEELRRLRRNGMYLRERINVPKAGLTQDVMRKIHDKWRKDELVRLKFHEVLATDMKTAHE 287
            ++ R LR    +L+  + + K GLT+ V+ +I +   K EL+++K       D K   E
Sbjct: 3   GKQKRYLRSLAHHLKPVVQIGKNGLTEGVLEEIDEALEKHELIKVKVLGNDREDRKEIAE 62

Query: 288 IVERRTGGLVIWRAGSVMVVYR 309
            +   TG  ++   G  +V+YR
Sbjct: 63  ELAEETGAELVQVIGKTIVLYR 84

GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome. Length = 84

>gnl\|CDD\|190184 pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain	Back alignment and domain information

>gnl\|CDD\|198171 smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly	Back alignment and domain information

>gnl\|CDD\|198171 smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly	Back alignment and domain information

>gnl\|CDD\|190184 pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain	Back alignment and domain information

>gnl\|CDD\|190184 pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		833
KOG1990		564	consensus Poly(A)-specific exoribonuclease PARN [R	100.0
PRK10343		97	RNA-binding protein YhbY; Provisional	99.93
PRK10343		97	RNA-binding protein YhbY; Provisional	99.93
PF01985		84	CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR	99.92
TIGR00253		95	RNA_bind_YhbY putative RNA-binding protein, YhbY f	99.92
TIGR00253		95	RNA_bind_YhbY putative RNA-binding protein, YhbY f	99.92
PF01985		84	CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR	99.91
COG1534		97	Predicted RNA-binding protein containing KH domain	99.9
COG1534		97	Predicted RNA-binding protein containing KH domain	99.89
KOG1990		564	consensus Poly(A)-specific exoribonuclease PARN [R	98.57

>KOG1990 consensus Poly(A)-specific exoribonuclease PARN [Replication, recombination and repair]	Back alignment and domain information

Probab=100.00  E-value=9.7e-80  Score=694.35  Aligned_cols=521  Identities=45%  Similarity=0.644  Sum_probs=487.2

Q ss_pred             ccCCCCcccccCCCHHHHHHHHHcccCCCceEecCCCCCCHHHHHHHHHHHHhCCeEEEEecCCchHhHHHHHHHHHHHh
Q 036294          214 RRMKAPTLAELTIEDEELRRLRRNGMYLRERINVPKAGLTQDVMRKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRT  293 (833)
Q Consensus       214 ~~~~~ps~AEltLt~kErr~LR~lAh~LkpvV~IGK~GVTd~VVeeIh~awk~hELVKVKvl~~~~~dmk~~~e~LEekT  293 (833)
                      +... |++||+++.+.++.+||..|..+...+  +++|+|+.+++.|++.|+.+|+++++|....+.+|.+++++++..|
T Consensus         3 ~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~y~k~k~~~~~~~~~q~~~~~~~~~~~~~~~~~~   79 (564)
T KOG1990|consen    3 NFES-LSLAELTVDEADLRRLRLVATGMTSAP--WKAGSTFDTVEAIYLKWKDNEEVYLKFQFGLCLFMKRSHEALEMST   79 (564)
T ss_pred             cccc-hhHHHhhcCHHHHHHHhhhhccceecc--cccccchhhhHHHHHHHHhhhhhheeeccccchhHHHhhhHhhccC
Confidence            3444 999999999999999999999998887  9999999999999999999999999999999999999999999999


Q ss_pred             CC-eEEEEECcEEEEeccCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCcccccccCCccccccCCCCCCChHHHhhhh
Q 036294          294 GG-LVIWRAGSVMVVYRGNNYAGPSSKPQPLDGDGDTLFVPHVSSTDGSTARSVDEKSEVPVRILDHSKPMTEEEAECNS  372 (833)
Q Consensus       294 Gg-eVVqrIG~viVLYRg~nY~~p~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~e~n~  372 (833)
                      || .+||+.|.+...|++..|..|..-..+   ..                            ..+....+++++.+.+.
T Consensus        80 ~~n~~~~~~g~~~s~~~~~~~~~~~~~~~~---~~----------------------------~~~~~~~~~~~~~~~~~  128 (564)
T KOG1990|consen   80 GGNFVVWSRGDSISSPEFLCQRSPVDFVAR---QQ----------------------------ENQAGKWPSELEKEKNE  128 (564)
T ss_pred             CCceeeeecCccccCCccceeecchhhhhh---hc----------------------------hhhhhhhHHHHHHHHHH
Confidence            99 999999999999988888877532110   00                            01222334778889999


Q ss_pred             hhhccCCCcccccCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCHHHHHHHHHhhhcCCCeeEecccchhhHHHHH
Q 036294          373 LLDSLGPRFQEWWGTGILPVDADLLPPKVDGYKTPFRLLPTGMRSRLTNAEMTDLRRLARSLPCHFALGRNRNHQGLAVA  452 (833)
Q Consensus       373 LLd~LGPRf~dW~g~~plPVDadLLp~~vpgyk~PfR~lP~Gvr~~Lt~~E~T~LRrlar~lPphfaLGRn~~~~gLA~a  452 (833)
                      +++++||+|.|||+.+++|||+||+|++||+|.+|||.+|+|++++||..|+|.+|++|..+||||+||+++.+||++.+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~dl~~~~i~~~~~p~r~l~~~~~~~l~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~~  208 (564)
T KOG1990|consen  129 LLDSLGPELSDWGGSDRLSVDADLLPEKIPDYMRPFRTLPVGSPPLLTSIESTLLRRLGYKLPPHFALGRSRKLQGLAVA  208 (564)
T ss_pred             HhhccCcccccCCCCCCccchhhhchhhhhcccChhccCCCCChhhhhhHHHHHHHHhcccccccceehhccccccchhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcceEEEeeccCCCCCchHHHHHHH--hhccCceeeeecCCEEEEEecCCCCChhHHHHHHHHHHHHHhhhhHH
Q 036294          453 ILKLWEKSLVAKIAVKRGIQNTNNKLMAEEL--KSLTGGTLLQRNKFYIVLYRGKDFLPPNVASALAEREQCAKQIQDVE  530 (833)
Q Consensus       453 I~klWEk~~iaKIa~KrGvqnT~~e~MaeeL--K~LTGgvLLsRnke~IVlYRGkdFlp~~V~~al~eRe~~~~~~q~~E  530 (833)
                      |+++|++|++++|+|++|++++.++.||.+|  +.+||++|++||+.++|+|||++|++ .|.++|.++.......|+.+
T Consensus       209 ~~~~~~k~~~~k~~~~rg~~~~~~~~~a~~l~~~~~tg~~lv~hN~~~dv~y~~~~Fl~-~lp~~l~~f~~~~~~fp~~~  287 (564)
T KOG1990|consen  209 MVSFWEKHEFAKILIKRGVLETRKERMADELQELLLTGKVLVLHNKLLDVMYRYKNFLS-PLPSTLEEFTDSSSMFPNIE  287 (564)
T ss_pred             HHHHHHHHHHHHHHHHhcchhhhccchHHHHHHHHhcCCeEEeeccceeeeeehhhccc-ccchhHHHhhhhhhhhhhhH
Confidence            9999999999999999999999999999999  99999999999999999999999999 99999999999888899999


Q ss_pred             HHHhhccccCCCCCCCCCCCCCcchHHHHHHHHhhccccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036294          531 EKVRSKTLEATPSGETEGQAPAGTLAEFYEAQKRWGREVSAEER-EKMVEEASKAKHARLVKRIEHKLAVSQAKKLRAER  609 (833)
Q Consensus       531 e~aR~~a~~~~~~~~~~~~~~aGtl~e~~~a~~~w~~~~~~~~~-~~~~~e~~~~~~~~~~k~~e~kL~~a~~K~~~ae~  609 (833)
                      +.+|+.+++....     ...++|+.|+..+..+|+..+..... ..+..+......++..+.+.+++..+++|++.++.
T Consensus       288 ~~~~~~~~~~~~~-----~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (564)
T KOG1990|consen  288 DTKRLAKLSEYQK-----LNLKATLLELARAKAKKEKEIERRSISSRLKLEFEKASSEKLTEAIFHKLEKAKKKLASANR  362 (564)
T ss_pred             HHHHhhccccccc-----hhhhhhHHHHHHHhcccccCcccccccchhhhhhhccchhhHHHHHHHHHhhhhhhccchhh
Confidence            9999988433111     46799999999999999998866654 47888999999999999999999999999999999


Q ss_pred             HHHhhhccCCCCCCCccCCCCCHHHHHHHHHcccCCcceeeccCCCCCHHHHHHHHHHHhhCceEEEEecCCCH-HHHHH
Q 036294          610 LLAKIEASMVPSGPDYDQETITDEERAMFRRVGLRMKAFLPLGIRGVFDGVVENMHLHWKYRELVKLITKQKTL-AYVED  688 (833)
Q Consensus       610 ~L~Kle~~~~P~e~~~d~E~LT~eERk~LRklGhkLKPvV~IGKrGVtdgVIeeIh~awk~hELVKVkv~~~~~-ed~ke  688 (833)
                      .|++++....|++..++++.+|.+++.+++++|.+|++++.+|++|+|+|||.+||.||++||++||+|+.... .+++.
T Consensus       363 ~l~~~~~~~~~~~~~~~~e~~t~ee~~~~~k~g~k~~~~~~~~rrg~f~g~i~n~~l~wk~~e~~k~i~~~~~~~~~~~~  442 (564)
T KOG1990|consen  363 ILAKLEDPKIPAELRYDPESITEEERLMLRKVGLKMKRRLLSGRRGVFDGVIENMHLHWKSRELVKVICKEKNLPSQVKQ  442 (564)
T ss_pred             hhhcccccccccccccchhhcChHHHHHHHHHHHhhccccccCCcccccceeecchhhhhhcccceeeeccccccHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999876 99999


Q ss_pred             HHHHHHHHhCCEEEEEeecCCCcEEEEEecCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036294          689 TARLLEYESGGILIAIERVPKGFALIFYRGKNYRRPISLRPRNLLTKAKALKRSVAMQRHEALSQHISDLENTIEQMKKE  768 (833)
Q Consensus       689 iA~~Le~~SGg~LVqVI~~~kG~tiILYRgkNY~rP~~~~P~nlLtKrkAL~rS~~~Qr~esl~~~i~~lek~i~~l~~~  768 (833)
                      .|..++.++|+++|+++++.+|+.|++||++||++|..++|.++|+||+|+.+++++|+.+++++||..++.++++++.+
T Consensus       443 ~a~~le~esg~~~v~~~~~~~~~ai~~yr~k~y~~p~~l~P~~~l~~~k~~~~~~~~~~~~a~~~~i~~~~~~~e~~~~~  522 (564)
T KOG1990|consen  443 YASALERESGGILVSIDKNPKGYAIIAYRGKNYDRPTSLRPRNLLSRRKALERSLEEQRKEALKSHISDLEQEIEQLQAS  522 (564)
T ss_pred             HHHHHHHHhCCceeeeccCCchhhHHHhhhhhccCCcccCchhhhcccCCccccHHHHHHHHHhhhcchhhhhHHHhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccc
Q 036294          769 IGVSKD  774 (833)
Q Consensus       769 l~~~~~  774 (833)
                      +....+
T Consensus       523 ~~~~~~  528 (564)
T KOG1990|consen  523 VEAMPA  528 (564)
T ss_pred             hhcccc
Confidence            866544

>PRK10343 RNA-binding protein YhbY; Provisional	Back alignment and domain information

>PRK10343 RNA-binding protein YhbY; Provisional	Back alignment and domain information

>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain	Back alignment and domain information

>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family	Back alignment and domain information

>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family	Back alignment and domain information

>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain	Back alignment and domain information

>COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG1990 consensus Poly(A)-specific exoribonuclease PARN [Replication, recombination and repair]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		833
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-16
1jo0_A		98	Hypothetical protein HI1333; structural genomics,	2e-13
1jo0_A		98	Hypothetical protein HI1333; structural genomics,	4e-08
1rq8_A		104	Conserved hypothetical protein; structural genomic	3e-13
1rq8_A		104	Conserved hypothetical protein; structural genomic	1e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 81.4 bits (200), Expect = 7e-16
 Identities = 91/646 (14%), Positives = 180/646 (27%), Gaps = 203/646 (31%)

Query: 147 EEEEDDINGAATGEE---RLEDLLRREWVRPNTVLREVEGEEDDSLLPW--EREEEENLR 201
           +EE D I  +        RL   L  +  +   V + VE     +   +     + E  +
Sbjct: 48  KEEIDHIIMSKDAVSGTLRLFWTLLSK--QEEMVQKFVEEVLRINY-KFLMSPIKTEQRQ 104

Query: 202 AGGEKPAGETRRRRMK--APTLAELTIE-DEELRRLRRNGMYLRERINVP--------KA 250
                     +R R+       A+  +   +   +LR+  + LR   NV         K 
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164

Query: 251 GLTQDVMR--KIHDK------W------RKDELVRLKFHEVLATDMKTAHEIVERRTGGL 296
            +  DV    K+  K      W         E V L+  + L   +          +  +
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV-LEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 297 VIWRAGSVMVVYRGNNYAGPSSKPQP-----LDG--DGDTL--FVPH----VSSTDGSTA 343
              +     +           SKP       L    +      F       +++      
Sbjct: 224 ---KLRIHSIQAELRRLL--KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278

Query: 344 RSVDEKSEVPVRILDHSKPMTEEEAECNSLLDSLGPRFQEWWGTGILPVDADLLPPKVDG 403
             +   +   + +  HS  +T +E +  SL         ++     L      LP +V  
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVK--SL-------LLKY-----LDCRPQDLPREVLT 324

Query: 404 YKTPFRLLPTGMRSRLTNAEMTDLRRLARSLPCHFALGRNRNHQGLAVAILKLWEKSLVA 463
              P RL    +              +A S+         R+     +A    W+     
Sbjct: 325 -TNPRRL---SI--------------IAESI---------RDG----LATWDNWKHVNCD 353

Query: 464 KIAVKRGIQNTNNKLMAEELKSLTGGTLLQRNKFY--IVLYRGKDF-LPPNVASAL--AE 518
           K  +   I+++ N L   E +           K +  + ++      +P  + S +    
Sbjct: 354 K--LTTIIESSLNVLEPAEYR-----------KMFDRLSVFP-PSAHIPTILLSLIWFDV 399

Query: 519 REQCAKQIQDVEEKVRSKTLEATPSGETEGQAPAGTLAEFYEAQKRWGREVSA------E 572
            +     +  V  K+   +L                       +K+      +      E
Sbjct: 400 IKSD---VMVVVNKLHKYSL----------------------VEKQPKESTISIPSIYLE 434

Query: 573 EREKMVEEASKAKHARLVKRIE-------------------------HKLAVSQAKKLRA 607
            + K+  E   A H  +V                             H   +   +++  
Sbjct: 435 LKVKLENEY--ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492

Query: 608 ERLL--------AKIEASMVP---SGPDYD--------QETITDEERAMFRRVGLRMKAF 648
            R++         KI         SG   +        +  I D +    R V   +  F
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD-F 551

Query: 649 LPLGIRGVFDGVVENMHLHWKYRELVKLITKQKTLAYVEDTARLLE 694
           LP         + EN+    KY +L+++    +  A  E+  + ++
Sbjct: 552 LP--------KIEENLICS-KYTDLLRIALMAEDEAIFEEAHKQVQ 588

PyMOL of 1vt4

>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A Length = 98	Back alignment and structure

>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A Length = 98	Back alignment and structure

>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1 Length = 104	Back alignment and structure

>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1 Length = 104	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		833
1jo0_A		98	Hypothetical protein HI1333; structural genomics,	99.94
1rq8_A		104	Conserved hypothetical protein; structural genomic	99.94
1rq8_A		104	Conserved hypothetical protein; structural genomic	99.94
1jo0_A		98	Hypothetical protein HI1333; structural genomics,	99.94

>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A	Back alignment and structure

Probab=99.94  E-value=2.3e-27  Score=214.86  Aligned_cols=87  Identities=20%  Similarity=0.295  Sum_probs=86.1

Q ss_pred             CCCHHHHHHHHHcccCCCceEecCCCCCCHHHHHHHHHHHHhCCeEEEEecCCchHhHHHHHHHHHHHhCCeEEEEECcE
Q 036294          225 TIEDEELRRLRRNGMYLRERINVPKAGLTQDVMRKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGGLVIWRAGSV  304 (833)
Q Consensus       225 tLt~kErr~LR~lAh~LkpvV~IGK~GVTd~VVeeIh~awk~hELVKVKvl~~~~~dmk~~~e~LEekTGgeVVqrIG~v  304 (833)
                      +||++|+++||++||+|+|+|+|||+|||++|+++|+++|++||||||+|+++|.++++++|++|+++|||++||+||++
T Consensus         2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~IG~~   81 (98)
T 1jo0_A            2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIGHI   81 (98)
T ss_dssp             CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEETTE
T ss_pred             CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCE
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeccC
Q 036294          305 MVVYRGN  311 (833)
Q Consensus       305 iVLYRg~  311 (833)
                      +||||++
T Consensus        82 ~vLyR~~   88 (98)
T 1jo0_A           82 LVLYRPS   88 (98)
T ss_dssp             EEEECCC
T ss_pred             EEEEccC
Confidence            9999987

PyMOL of 1jo0

>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1	Back alignment and structure

>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1	Back alignment and structure

>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		833
d1rq8a_		96	d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphy	5e-19
d1rq8a_		96	d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphy	3e-18
d1rq8a_		96	d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphy	5e-17
d1jo0a_		97	d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus i	2e-18
d1jo0a_		97	d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus i	9e-18
d1jo0a_		97	d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus i	1e-16

>d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]} Length = 96	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: YhbY-like
family: YhbY-like
domain: Hypothetical protein SAV1595
species: Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]

 Score = 80.5 bits (199), Expect = 5e-19
 Identities = 17/98 (17%), Positives = 41/98 (41%), Gaps = 4/98 (4%)

Query: 630 ITDEERAMFRRVGLRMKAFLPLGIRGVFDGVVENMHLHWKYRELVKLITKQKTLAYVEDT 689
           +T +++   R +   +     +G  G+ + +++ +    + REL+K+   Q      ++ 
Sbjct: 2   LTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKEL 61

Query: 690 ARLLEYESGGILIAIERVPKGFALIFYRGKNYRRPISL 727
           A  L   +   L+ +     G  ++ YR     + I L
Sbjct: 62  AETLSEATRSELVQVI----GSMIVIYRESKENKEIEL 95

PyMOL of d1rq8a_

>d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]} Length = 96	Back information, alignment and structure

>d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]} Length = 96	Back information, alignment and structure

>d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]} Length = 97	Back information, alignment and structure

>d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]} Length = 97	Back information, alignment and structure

>d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]} Length = 97	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		833
d1rq8a_		96	Hypothetical protein SAV1595 {Staphylococcus aureu	99.94
d1jo0a_		97	YhbY homologue HI1333 {Haemophilus influenzae [Tax	99.93
d1jo0a_		97	YhbY homologue HI1333 {Haemophilus influenzae [Tax	99.93
d1rq8a_		96	Hypothetical protein SAV1595 {Staphylococcus aureu	99.93

>d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: YhbY-like
family: YhbY-like
domain: Hypothetical protein SAV1595
species: Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]

Probab=99.94  E-value=1.1e-26  Score=207.10  Aligned_cols=92  Identities=20%  Similarity=0.332  Sum_probs=88.9

Q ss_pred             CCCHHHHHHHHHcccCCCceEecCCCCCCHHHHHHHHHHHHhCCeEEEEecCCchHhHHHHHHHHHHHhCCeEEEEECcE
Q 036294          225 TIEDEELRRLRRNGMYLRERINVPKAGLTQDVMRKIHDKWRKDELVRLKFHEVLATDMKTAHEIVERRTGGLVIWRAGSV  304 (833)
Q Consensus       225 tLt~kErr~LR~lAh~LkpvV~IGK~GVTd~VVeeIh~awk~hELVKVKvl~~~~~dmk~~~e~LEekTGgeVVqrIG~v  304 (833)
                      |||++|+++||++||+|+|+|+|||+|||++|+++|+++|++||||||+|.+++..+++++++.|+++|||++||+||++
T Consensus         1 mLt~kqr~~LR~~ah~l~p~v~IGk~Glt~~vi~ei~~~l~~~ELIKvk~~~~~~~~~~~~~~~l~~~t~a~~V~~iG~~   80 (96)
T d1rq8a_           1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVIGSM   80 (96)
T ss_dssp             CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEETTE
T ss_pred             CcCHHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHHHHHHHhCCeeEEEecCCCHHHHHHHHHHHHHHhCCEEEEEECCE
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeccCCCCCC
Q 036294          305 MVVYRGNNYAGP  316 (833)
Q Consensus       305 iVLYRg~nY~~p  316 (833)
                      +||||+++++..
T Consensus        81 ~vlyR~~~~~~k   92 (96)
T d1rq8a_          81 IVIYRESKENKE   92 (96)
T ss_dssp             EEEEECCCSCCS
T ss_pred             EEEEeCCCCCCC
Confidence            999999876543

PyMOL of d1rq8a_

>d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]}	Back information, alignment and structure